RPSBLAST alignment for GI: 255764471 and conserved domain: cd04164
>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
Score = 117 bits (295), Expect = 7e-27
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64
+ IVG PNVGKS+L N L + A+V + G TRD + I G+ ++DTAGI + +
Sbjct: 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE 63
Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124
+ I K ++ AI EA L+LF+ID+ G+ D I K PII+V NK D
Sbjct: 64 D-EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADK--PIIVVLNKSDLL 120
Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164
+ K I+ ISA+ G EL + ++
Sbjct: 121 PDSELLSLL---AGKPIIAISAKTGEGLDELKEALLELAG 157