RPSBLAST alignment for GI: 255764471 and conserved domain: cd04164

>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
 Score =  106 bits (268), Expect = 1e-23
 Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 19/166 (11%)

Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263
           +++ +VG+PNVGKS+L+N L G +R +    +G TRD +  S +    P+ + DTAG+R+
Sbjct: 2   IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRE 61

Query: 264 PSRITESL-EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322
               TE   E+  ++++ +++   +  + ++DA+   +++DL I++        +++ LN
Sbjct: 62  ----TEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILE--LPADKPIIVVLN 115

Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368
           K D++ D             + L  +    I  IS +TGEGLD+L 
Sbjct: 116 KSDLLPD------------SELLSLLAGKPIIAISAKTGEGLDELK 149