HHsearch alignment for GI: 255764472 and conserved domain: COG0635

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].
Probab=99.63  E-value=9.6e-15  Score=129.80  Aligned_cols=219  Identities=21%  Similarity=0.303  Sum_probs=151.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCC-EEEEECCCCCEEEECCCCC--CCCCC
Q ss_conf             725787412332446811100122---1376410058899988763101-331-0587314541134113444--31000
Q gi|255764472|r  175 GVTAFLTIQEGCDKFCTFCVVPYT---RGIEISRSLSQVVDEARKLIDN-GVC-EITLLGQNVNAWRGKGLDG--EKCTF  247 (469)
Q Consensus       175 ~~~a~ikI~~GC~~~CsfC~ip~~---RG~~rSr~~~~Iv~ei~~l~~~-G~k-Ei~L~g~d~~~Y~g~~~~~--~~~~l  247 (469)
T Consensus        34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~------ti~~GGGTPslL~~~~l  106 (416)
T COG0635          34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVK------TIYFGGGTPSLLSPEQL  106 (416)
T ss_pred             CCEEEEEC-CCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE------EEEECCCCCCCCCHHHH
T ss_conf             73688872-321250887888545347777399999999999999886227887278------99976983267799999


Q ss_pred             CHHHHHHHCCCC-CCC-CCCCC-CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             216788620444-300-13544-210001000366520221112201332111457899873033344114678999874
Q gi|255764472|r  248 SDLLYSLSEIKG-LVR-LRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS  324 (469)
Q Consensus       248 ~~Ll~~l~~i~~-~~r-iR~~s-~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~  324 (469)
T Consensus       107 ~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~G--vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~  184 (416)
T COG0635         107 ERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAG--VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK  184 (416)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99999999972357888279995088866899999999829--8779860145998999974788878999999999986


Q ss_pred             HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCC---CCH-HHHHHHHHHHHHHHHH
Q ss_conf             013443200000135220124789886332210111002000011120123214368---898-9999999999999999
Q gi|255764472|r  325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDE-NVKAERLLCLQKKLRE  400 (469)
Q Consensus       325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~q---V~~-~vk~~R~~~l~~~~~~  400 (469)
T Consensus       185 ~g-~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~  263 (416)
T COG0635         185 AG-FTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK  263 (416)
T ss_pred             CC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             38-97478872438999999999999999983499878646268658856766233577899868999999999999997


Q ss_pred             HHH
Q ss_conf             999
Q gi|255764472|r  401 QQV  403 (469)
Q Consensus       401 ~~~  403 (469)
T Consensus       264 ~Gy  266 (416)
T COG0635         264 AGY  266 (416)
T ss_pred             CCC
T ss_conf             796