HHsearch alignment for GI: 255764472 and conserved domain: COG4277
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only].
Probab=97.49 E-value=0.00063 Score=49.02 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=104.3
Q ss_pred EEE--CCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 741--233244681110012213-76410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 180 LTI--QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI--~~GC~~~CsfC~ip~~RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
T Consensus 56 lKiLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGv------i-~~~DyTmE~mi~var~ 128 (404)
T COG4277 56 LKILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGV------I-KNPDYTMEEMIEVARI 128 (404)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCC------C-CCCCHHHHHHHHHHHH
T ss_conf 99998625777638875555578854305899999999989887424330002463------3-6861479999999998
Q ss_pred --CCCCCCCCCCCCCCCCCC---CHHHHHHCC-CCCCCCCEEEEEECCC---------HHHHHHHCCCC-CCCHHHHHHH
Q ss_conf --444300135442100010---003665202-2111220133211145---------78998730333-4411467899
Q gi|255764472|r 257 --IKGLVRLRYTTSHPRDMS---DCLIKAHGD-LDVLMPYLHLPVQSGS---------DRILKSMNRRH-TAYEYRQIID 320 (469)
Q Consensus 257 --i~~~~riR~~s~~P~~~~---~~li~~~~~-~~~i~~~lhlpiQSgs---------~~vLk~M~R~~-~~e~~~~~i~ 320 (469)
T Consensus 129 LRle~~f~---GYIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e--~ 203 (404)
T COG4277 129 LRLEHKFR---GYIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAE--D 203 (404)
T ss_pred HHHCCCCC---CEEEEEECCCCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--C
T ss_conf 83204557---579987569999899999865341057767448864466618888837888898999987765155--0
Q ss_pred HHHHHC-CC---CCCCEEEECCCCCCHHHHHHHHHHHH-HHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHH
Q ss_conf 987401-34---43200000135220124789886332-210111002000011120123214368898999999
Q gi|255764472|r 321 RIRSVR-PD---IAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 (469)
Q Consensus 321 ~~r~~~-p~---~~i~tdiIvGfPgETeedf~~Tl~~i-~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R 390 (469)
T Consensus 204 ~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp--~~~pplmRehR 276 (404)
T COG4277 204 KRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLP--DDKPPLMREHR 276 (404)
T ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC--CCCCCHHHHHH
T ss_conf 22210472336778732788715887448899888877532431489862133368898886--66785367777