HHsearch alignment for GI: 255764472 and conserved domain: TIGR00089
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=100.00 E-value=0 Score=1014.34 Aligned_cols=432 Identities=47% Similarity=0.773 Sum_probs=398.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-CCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEE
Q ss_conf 7999957985688789999999998-79868776010889999278325079999999999999876766421898-189
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-LLV 103 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~-~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~-~~I 103 (469)
T Consensus 1 k~~i~T~GC~~N~~Dse~m~~~L~~~~G~~~~~~~~~ADv~i~NTC~vr~~ae~k~~~~l~~~~~~k----~~~~~d~~i 76 (455)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAAGYEVTDDPEEADVIIINTCAVREKAEQKVRSELGELAKLK----KKNPDDAKI 76 (455)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHC----CCCCCCCEE
T ss_conf 9689970666557889999998887447143388664457998534565157899999999999827----778888589
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCC--EECCC---CCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 99647301087889874100110011001113168887530597--00235---54411--2444333334575677772
Q gi|255764472|r 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDT---DYSVE--DKFERLSIVDGGYNRKRGV 176 (469)
Q Consensus 104 vVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~--~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~ 176 (469)
T Consensus 77 ~V~GC~aq~~~~~l~~~~p~~d~~~G~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~ 153 (455)
T TIGR00089 77 VVAGCLAQREGEELLKRIPEVDIVLGTQDVERIPELINSAEEGLREKQVVESVENISKEREEVYEELPR---PRSFEGKT 153 (455)
T ss_pred EEECCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCC---CCCCCCCE
T ss_conf 984644323878999645856999843137889999999863853335562278720345455644366---44677753
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCC-CCHHHHHHH
Q ss_conf 5787412332446811100122137641005889998876310133105873145411341134443100-021678862
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~-l~~Ll~~l~ 255 (469)
T Consensus 154 ~a~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~-~~~La~LL~~l~ 232 (455)
T TIGR00089 154 RAFVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGK-TNSLADLLRELS 232 (455)
T ss_pred EEEEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCC-CCCHHHHHHHHH
T ss_conf 8999840265869776881342660013588999999999984698099999885256247788889-764799999984
Q ss_pred C-CCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 0-4443001354421000100036652022--111220133211145789987303334411467899987401344320
Q gi|255764472|r 256 E-IKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 256 ~-i~~~~riR~~s~~P~~~~~~li~~~~~~--~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
T Consensus 233 ~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P~~~i~ 312 (455)
T TIGR00089 233 KKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVPDAAIT 312 (455)
T ss_pred HHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 00597026886046703268789999985078853520221266188699970378988899999999999847881775
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 0000135220124789886332210111002000011120123214368898999999999999999999999998-579
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA-CVG 411 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~-~iG 411 (469)
T Consensus 313 TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~~i~~~~n~~~~~G 392 (455)
T TIGR00089 313 TDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKRKYVG 392 (455)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02688289998899999999985238443431205788887463567888988999999999999999999999875049
Q ss_pred CEEEEEEEC---CCCCCC----EEEEECCCCCEEEECCC--CCCCCCEEEEEEEEEECCEEEE
Q ss_conf 789999842---568086----89999878628897388--7676888999999830873899
Q gi|255764472|r 412 QIIEVLIEK---HGKEKG----KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYG 465 (469)
Q Consensus 412 ~~~~Vlve~---~~~~~~----~~~G~t~~~~~V~~~~~--~~~~G~~v~V~I~~~~~~~L~G 465 (469)
T Consensus 393 ~~~~VLve~~~~~~~~~~~~gR~~~G~t~~~~~v~~~~~~~~~~~G~~v~V~i~~~~~~~L~G 455 (455)
T TIGR00089 393 KTLEVLVEGAYEEGKKEGLVGRELSGRTENYKLVVFEGGEDKNLIGKFVKVKITEAAEYSLIG 455 (455)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 878999853712454576148999986389858998167785547767999999734766779