HHsearch alignment for GI: 255764472 and conserved domain: TIGR00510
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=98.03 E-value=1.2e-05 Score=62.00 Aligned_cols=219 Identities=17% Similarity=0.227 Sum_probs=139.2
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 67777257874123324468111001221376410058899988763101331058731454113411344431000216
Q gi|255764472|r 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 171 ~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
T Consensus 64 d~~~~~~~~~~lg~~c~~~c~fc~~~~~~~p~~-pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~----dgg~~~~~~~ 138 (310)
T TIGR00510 64 DKSHGTATFLLLGDICTRRCPFCDVAHGRNPLP-PDPEEPEKLAETIKDLGLKYVVITSVDRDDLE----DGGAGHLAEC 138 (310)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCHHHHHHH
T ss_conf 322101244323136522476310224677898-87332256899998730553577512200023----4534678999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430013544210001000366520221-1122013321114578998730-333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~ 328 (469)
T Consensus 139 ~~~~~~~~p~~~~e~l~~df~g~~~~~~~~~~~~~~~~~~h---n~e-~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~ 214 (310)
T TIGR00510 139 VEALREKLPNIKIETLVPDFRGRDLKALDILLDAPPDVYNH---NLE-TVPRLTPFVRPRGATYRWSLKLLERAKETLPN 214 (310)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHC---CHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99987524541321001320104689999886246134530---112-33454333301332168899999998875032
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4320000013522012478988633221011100200001112012321436889899999999999999999999
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~ 404 (469)
T Consensus 215 ~~~k~g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~-~p~~~--h~--p~~~y~~p~~fd~~~~~~~~~gf~ 284 (310)
T TIGR00510 215 LPTKSGLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYL-RPSRR--HL--PVKRYVSPEEFDYWKERALELGFL 284 (310)
T ss_pred CCCCCCCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHH-CCHHH--CC--CCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 10112201104-7524789999998986374056501010-52001--25--300025740246788777651024