HHsearch alignment for GI: 255764472 and conserved domain: TIGR00538
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=99.15 E-value=6.1e-10 Score=93.95 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=153.0
Q ss_pred CCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHC
Q ss_conf 324468111----001221376410058899988763101--3310587314541134113444--31000216788620
Q gi|255764472|r 185 GCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSE 256 (469)
Q Consensus 185 GC~~~CsfC----~ip~~RG~~rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~ 256 (469)
T Consensus 60 FC~~~CyFCgCn~I~t~~~~-~~~~YL~~l~ke~~l~~~~~d~~R~V~Q-----LHw-GGGTP~YL~~~Q~~~l~~~i~~ 132 (462)
T TIGR00538 60 FCEKACYFCGCNVIITRRKE-KKDPYLEALKKEIALVAPLLDKDREVAQ-----LHW-GGGTPTYLSPEQIEELMKEIRE 132 (462)
T ss_pred HHHCCCCCCCCCEEECCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCEEE-----EEC-CCCCCCCCCHHHHHHHHHHHHH
T ss_conf 34121320146611305565-1016799999999998777524894688-----762-7898333788999999999998
Q ss_pred CCC-C-CCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCC
Q ss_conf 444-3-0013544-21000100036652022111220133211145789987303334411467899987401344-320
Q gi|255764472|r 257 IKG-L-VRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AIS 332 (469)
Q Consensus 257 i~~-~-~riR~~s-~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i~ 332 (469)
T Consensus 133 ~F~nf~~daEiSiEidPR~~~~e~~~~L~~~G--FNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~~~~~R~~--Gf~SiN 208 (462)
T TIGR00538 133 AFPNFSEDAEISIEIDPRYLTKEVIKALRDEG--FNRLSFGVQDFDKEVQQAVNRIQPEEMIFELMEKAREA--GFESIN 208 (462)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEECCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCEEE
T ss_conf 73201158447765237413788999999758--96642352107855544431348689999999999866--982787
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH--HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001352201247898863322101110020000111201232--1436-88989999999999999999999999985
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NMLE-QVDENVKAERLLCLQKKLREQQVSFNDAC 409 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa--~m~~-qV~~~vk~~R~~~l~~~~~~~~~~~~~~~ 409 (469)
T Consensus 209 ~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~vk~~q~k~~~~~LPS--~~~KL~Il~~~I~~L~~~-gY~f 285 (462)
T TIGR00538 209 LDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPWVKPAQRKIPEEALPS--AEEKLEILEETIAFLTEA-GYVF 285 (462)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHCCCCHHCCCC--HHHHHHHHHHHHHHHHHC-CCEE
T ss_conf 4201388887867899999998531877001210222101577850276200588--789999999999999757-9758
Q ss_pred CCCEEE
Q ss_conf 797899
Q gi|255764472|r 410 VGQIIE 415 (469)
Q Consensus 410 iG~~~~ 415 (469)
T Consensus 286 IGMDHF 291 (462)
T TIGR00538 286 IGMDHF 291 (462)
T ss_pred ECCCCC
T ss_conf 514457