HHsearch alignment for GI: 255764472 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=100.00 E-value=0 Score=905.92 Aligned_cols=417 Identities=32% Similarity=0.609 Sum_probs=373.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEECCCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 995798568878999999999879868776010--889999278325079999999999999876766421898189996
Q gi|255764472|r 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 29 i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~--ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
T Consensus 1 i~TlGCrvN~yEse~~k~~l~~~GY~~~~~~~~~pA~~~iiNTCtVT~~Ad~~~R~~ir~~~-------r~NP~A~iivT 73 (492)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKAPADVYIINTCTVTAKADRKARRAIRRAK-------RENPKAKIIVT 73 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCEECHHHHHHHHHHHHHHH-------HCCCCEEEEEE
T ss_conf 93267643635799999999757926842788543059998031433067888999999998-------20995599996
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCC-----C-------------------EECC----CCC----
Q ss_conf 4730108788987410011001100111316888753059-----7-------------------0023----554----
Q gi|255764472|r 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-----K-------------------RVVD----TDY---- 154 (469)
Q Consensus 107 GC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g-----~-------------------~~~~----~~~---- 154 (469)
T Consensus 74 GC~AQ~~~~~l~~-l~~~~~v~gn~~K~~~~~~~~~~~~~~vqrGPaPidqyvCGmrallaslkkkiisleltsefPsqt 152 (492)
T TIGR01579 74 GCYAQLNPKELAE-LKEVDLVLGNKEKDKILKLLGAYLEKLVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQT 152 (492)
T ss_pred CCCCCCCHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
T ss_conf 2311268799951-587289844611137889999999987413888245677779999987511125554113687644
Q ss_pred -------------------------CCCCCCCCCCCCC-------CC----CCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf -------------------------4112444333334-------57----56777725787412332446811100122
Q gi|255764472|r 155 -------------------------SVEDKFERLSIVD-------GG----YNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 (469)
Q Consensus 155 -------------------------~~~~~~~~~~~~~-------~~----~~~~~~~~a~ikI~~GC~~~CsfC~ip~~ 198 (469)
T Consensus 153 hmP~l~a~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PrWeeGPlv~~DAf~~~~RAFvKVQdGCn~~CsyC~IP~~ 232 (492)
T TIGR01579 153 HMPILEAKPLLTLAESFVRVKNKIFVREKEVPEFEEVAPRPRWEEGPLVAVDAFEERTRAFVKVQDGCNKFCSYCIIPFA 232 (492)
T ss_pred CCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 55023136312476501101154200256431055436888655674312310027886257887588988441014033
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 13-76410058899988763101331058731454113411344431000216788620-44430013544210001000
Q gi|255764472|r 199 RG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDC 276 (469)
Q Consensus 199 RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~-i~~~~riR~~s~~P~~~~~~ 276 (469)
T Consensus 233 RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Y-g~d~~~~g~~L~~Ll~~i~~q~~g~~RiRlSS~~p~~~~~~ 311 (492)
T TIGR01579 233 RGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSY-GDDLGENGSSLAKLLEQILKQIPGIERIRLSSIDPEDIDEE 311 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHCHH
T ss_conf 78976416678999999999737755999840014445-68887667608999999986468834676325776550489
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 36652022111220133211145789987303334411467899987401344320000013522012478988633221
Q gi|255764472|r 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 (469)
Q Consensus 277 li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~ 356 (469)
T Consensus 312 l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~ 391 (492)
T TIGR01579 312 LLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKE 391 (492)
T ss_pred HHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997347641632000022277379842487887689999999998507763037603740888988999999999852
Q ss_pred HHHHHCCCHHEEECCCHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCC
Q ss_conf 011100200001112012321436--889899999999999999999999999857978999984256808689999878
Q gi|255764472|r 357 IGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 (469)
Q Consensus 357 ~~~~~~~vf~yS~r~gT~Aa~m~~--qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~~~~~~~~~~G~t~~ 434 (469)
T Consensus 392 ~~~~~~HiFpyS~R~~T~A~~m~~rf~v~~~~~KeR~~~L~~~~~~~~~~~~~k~~G~~~~vLVE~~-~~~~v~~g~~~~ 470 (492)
T TIGR01579 392 IEFSGLHIFPYSARPGTPASAMDDRFKVPETIKKERVKRLKELAEKVYQEYLKKYLGKELEVLVEKE-KAQGVLTGYSEN 470 (492)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-ECCEEEEECCCC
T ss_conf 6602133542688432812047874427611588999999999888889999986188348998998-075578730886
Q ss_pred CCEEEECCCC-CCCCCEEEEEE
Q ss_conf 6288973887-67688899999
Q gi|255764472|r 435 LQSVVLNSKN-HNIGDIIKVRI 455 (469)
Q Consensus 435 ~~~V~~~~~~-~~~G~~v~V~I 455 (469)
T Consensus 471 y~~~~~~~~~~~~~~~~~~V~i 492 (492)
T TIGR01579 471 YLKVKVESDKKDAAGELISVRI 492 (492)
T ss_pred EEEEEEECCCCCEECCCEEEEC
T ss_conf 1278884478500025136617