HHsearch alignment for GI: 255764472 and conserved domain: TIGR02493
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=96.73 E-value=0.013 Score=39.14 Aligned_cols=209 Identities=16% Similarity=0.230 Sum_probs=106.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH--HH-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 44333334575677772578741233244681110012213--76-4100588999887631013310587314541134
Q gi|255764472|r 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG--IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 (469)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG--~~-rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~ 236 (469)
T Consensus 5 ~Es~G~vDGPG~R------FvvFmqGC~lRC~YChNPDTW~~~~~G~~~t~~el~~e~~~yk~f-----~~~-----sGG 68 (243)
T TIGR02493 5 VESMGTVDGPGIR------FVVFMQGCPLRCQYCHNPDTWDLKKGGTEVTVEELIKEVKSYKDF-----FKA-----SGG 68 (243)
T ss_pred EEECCCCCCCCCE------EEEEECCHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHH-----HHC-----CCC
T ss_conf 3534522388506------877543536775305898743358878120789999999989988-----720-----799
Q ss_pred ECCCCCCC----CC-CCHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHHHHHCC-CCCCCCCEEE---EEECCCHHHHHH
Q ss_conf 11344431----00-02167886204443001354421000--10003665202-2111220133---211145789987
Q gi|255764472|r 237 GKGLDGEK----CT-FSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGD-LDVLMPYLHL---PVQSGSDRILKS 305 (469)
Q Consensus 237 g~~~~~~~----~~-l~~Ll~~l~~i~~~~riR~~s~~P~~--~~~~li~~~~~-~~~i~~~lhl---piQSgs~~vLk~ 305 (469)
T Consensus 69 GvT~SGGEPllQ~~F~~~~f~~cK~~~GiH-Tcl---DT~GGCf--tf~~~~~~~~~~lLe~TDLvLLDiK~~~~~~y~~ 142 (243)
T TIGR02493 69 GVTVSGGEPLLQPEFVLELFKACKKELGIH-TCL---DTSGGCF--TFLGGFTEAADELLEVTDLVLLDIKHIDPEKYKK 142 (243)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEE---ECCCCHH--HHHCCHHHHHHHHHHCCCEEEEECCCCCHHHCCC
T ss_conf 589868950201699999999999856983-887---4488343--3412124899975100587886234368124000
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH----------HHHHCCCHHEEECCCHHH
Q ss_conf 3033344114678999874013443200000135220124789886332210----------111002000011120123
Q gi|255764472|r 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI----------GYAQAFSFKYSPRLGTPG 375 (469)
Q Consensus 306 M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~----------~~~~~~vf~yS~r~gT~A 375 (469)
T Consensus 143 LTg~~~~~ptl~Fa~~L~~~~kP~WiRYVlVPGy-TD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~--~g~~ 219 (243)
T TIGR02493 143 LTGVKSLEPTLEFAKYLAKRNKPIWIRYVLVPGY-TDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEA--LGIE 219 (243)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH--CCCC
T ss_conf 1456775245899999996589889999865887-799899999999997469927998656886021103876--6897
Q ss_pred HHCCCCCC-HHHHHHHHHH
Q ss_conf 21436889-8999999999
Q gi|255764472|r 376 SNMLEQVD-ENVKAERLLC 393 (469)
Q Consensus 376 a~m~~qV~-~~vk~~R~~~ 393 (469)
T Consensus 220 Y~L~~~~~p~~e~~~~~~~ 238 (243)
T TIGR02493 220 YKLEGVKPPNKEQLERIKE 238 (243)
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 5888889879899999999