HHsearch alignment for GI: 255764472 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.96  E-value=1.4e-29  Score=240.41  Aligned_cols=209  Identities=33%  Similarity=0.535  Sum_probs=168.6

Q ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf             57874123324468111001221376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r  177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE  256 (469)
Q Consensus       177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~  256 (469)
T Consensus         2 ~~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~   79 (216)
T smart00729        2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIG-G-GTPTLLSPEQLEELLEAIRE   79 (216)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC-C-CCCCCCCHHHHHHHHHHHHH
T ss_conf             799999878198484298175889645759999999999999708976530011002-4-68988899999999999998


Q ss_pred             CCCCCC-C-CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCCE
Q ss_conf             444300-1-35442100010003665202211122013321114578998730333441146789998740134-43200
Q gi|255764472|r  257 IKGLVR-L-RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISS  333 (469)
Q Consensus       257 i~~~~r-i-R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~-~~i~t  333 (469)
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g--~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~--g~~~~~~  155 (216)
T smart00729       80 ILGLADDVEITIETRPGTLTEELLEALKEAG--VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPIKVST  155 (216)
T ss_pred             HCCCCCCEEEEEECCCCCCCHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH--CCCEEEE
T ss_conf             5143562699997060215899999999849--98666673550789998717999999999999999985--8936877


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf             0001352201247898863322101110020000111201232143688989999999
Q gi|255764472|r  334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL  391 (469)
Q Consensus       334 diIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~  391 (469)
T Consensus       156 ~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~~~~~~~~~~~  213 (216)
T smart00729      156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERL  213 (216)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCCCCHHHHHHHH
T ss_conf             5786799999999999999999469198998748756998466501629888999999