HHsearch alignment for GI: 255764472 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.96 E-value=1.4e-29 Score=240.41 Aligned_cols=209 Identities=33% Similarity=0.535 Sum_probs=168.6
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 57874123324468111001221376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
T Consensus 2 ~~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~ 79 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIG-G-GTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC-C-CCCCCCCHHHHHHHHHHHHH
T ss_conf 799999878198484298175889645759999999999999708976530011002-4-68988899999999999998
Q ss_pred CCCCCC-C-CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCCE
Q ss_conf 444300-1-35442100010003665202211122013321114578998730333441146789998740134-43200
Q gi|255764472|r 257 IKGLVR-L-RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISS 333 (469)
Q Consensus 257 i~~~~r-i-R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~-~~i~t 333 (469)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g--~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~--g~~~~~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAG--VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPIKVST 155 (216)
T ss_pred HCCCCCCEEEEEECCCCCCCHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH--CCCEEEE
T ss_conf 5143562699997060215899999999849--98666673550789998717999999999999999985--8936877
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 0001352201247898863322101110020000111201232143688989999999
Q gi|255764472|r 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 (469)
Q Consensus 334 diIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~ 391 (469)
T Consensus 156 ~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~~~~~~~~~~~ 213 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERL 213 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCCCCHHHHHHHH
T ss_conf 5786799999999999999999469198998748756998466501629888999999