HHSEARCH alignment of GI: 255764472 and SCOP domain: d1olta_

Alignment
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=99.88  E-value=9e-23  Score=186.30  Aligned_cols=191  Identities=18%  Similarity=0.265  Sum_probs=141.7

Q ss_pred             CCEEEEEECCCCCCCCCCCCHHH--HHH-HHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC
Q ss_conf             72578741233244681110012--213-76410058899988763101-3310587314541134113444--310002
Q gi|255764472|r  175 GVTAFLTIQEGCDKFCTFCVVPY--TRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS  248 (469)
Q Consensus       175 ~~~a~ikI~~GC~~~CsfC~ip~--~RG-~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~  248 (469)
                      +..-||-|== |++.|+||.-+.  .+. ....+-++.+++|++...+. +-+.|.      ..|.|.+.++  ....+.
T Consensus        49 plsLYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~------~i~~GGGTPt~L~~~~l~  121 (441)
T d1olta_          49 PLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVS------QLHWGGGTPTYLNKAQIS  121 (441)
T ss_dssp             CEEEEEEECE-ESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEE------EEEEEESCGGGSCHHHHH
T ss_pred             CEEEEEEECC-CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC------EEEECCCCCCCCCHHHHH
T ss_conf             6289997289-788899895836548885509999999999999966761798503------038618884778999999


Q ss_pred             HHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             1678862044430---0135442100010003665202211122013321114578998730333441146789998740
Q gi|255764472|r  249 DLLYSLSEIKGLV---RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV  325 (469)
Q Consensus       249 ~Ll~~l~~i~~~~---riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~  325 (469)
                      .|+..+.+.....   .+.+ -++|..++++.+..+++.+  +..+++++||+|++||+.|||.++.+++.++++.+|+.
T Consensus       122 ~ll~~l~~~~~~~~~~e~t~-E~~P~~~~~~~l~~l~~~G--~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~  198 (441)
T d1olta_         122 RLMKLLRENFQFNADAEISI-EVDPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI  198 (441)
T ss_dssp             HHHHHHHHHSCEEEEEEEEE-EECSSSCCTHHHHHHHHTT--CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCHHCCCC-CCCCCCCCHHHHHHHHHHC--CCEEEECCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99998765223450000221-0234542057899999719--85599512001304554430578789999999987741


Q ss_pred             CCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHH
Q ss_conf             1344-320000013522012478988633221011100200001112012321
Q gi|255764472|r  326 RPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN  377 (469)
Q Consensus       326 ~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~  377 (469)
                        ++ .+++|+|+|+||||.++|++|++.+.+++++++.+|+|+.+|+|.++.
T Consensus       199 --g~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q  249 (441)
T d1olta_         199 --GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQ  249 (441)
T ss_dssp             --TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGG
T ss_pred             --CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHH
T ss_conf             --442362354432377603778899989985088742232211246126766


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]