Query gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 469
No_of_seqs 165 out of 4229
Neff 6.2
Searched_HMMs 13730
Date Wed Jun 1 05:42:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764472.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olta_ c.1.28.2 (A:) Oxygen-i 99.9 9E-23 6.5E-27 186.3 11.2 191 175-377 49-249 (441)
2 d1r30a_ c.1.28.1 (A:) Biotin s 99.7 3.1E-16 2.2E-20 137.5 11.7 187 182-385 46-238 (312)
3 d1tv8a_ c.1.28.3 (A:) Molybden 98.3 1.4E-05 9.9E-10 58.1 13.3 190 179-385 15-212 (327)
4 d7reqa2 c.23.6.1 (A:561-728) M 95.6 0.083 6E-06 29.8 11.5 99 24-132 37-149 (168)
5 d7reqb2 c.23.6.1 (B:476-638) M 94.2 0.19 1.4E-05 27.1 8.9 109 20-142 32-154 (163)
6 d1yvca1 b.40.4.12 (A:1-69) Hyp 92.8 0.2 1.5E-05 26.9 6.9 55 410-468 15-69 (69)
7 d1yeza1 b.40.4.12 (A:1-68) Hyp 91.6 0.36 2.6E-05 25.1 7.0 55 410-468 13-67 (68)
8 d1uwva1 b.40.4.12 (A:15-74) rR 87.8 0.8 5.8E-05 22.5 7.6 53 412-468 1-53 (60)
9 d1i60a_ c.1.15.4 (A:) Hypothet 78.0 1 7.6E-05 21.6 3.6 24 338-361 218-241 (278)
10 d1gzga_ c.1.10.3 (A:) 5-aminol 73.9 1.4 0.0001 20.6 3.4 24 206-229 58-81 (329)
11 d2gjxa1 c.1.8.6 (A:167-528) be 71.8 1.3 9.7E-05 20.8 2.8 15 206-220 134-148 (362)
12 d2naca2 c.23.12.1 (A:1-147,A:3 65.6 3.3 0.00024 17.8 3.8 38 248-288 81-118 (186)
13 d1ccwa_ c.23.6.1 (A:) Glutamat 64.4 3.6 0.00026 17.6 9.3 98 25-131 4-120 (137)
14 d1qbaa3 c.1.8.6 (A:338-780) Ba 53.4 4.5 0.00032 16.9 2.7 25 378-402 400-426 (443)
15 d1nowa1 c.1.8.6 (A:200-552) be 48.1 6.4 0.00047 15.7 3.1 12 207-218 134-145 (353)
16 d1itua_ c.1.9.7 (A:) Renal dip 47.8 6.5 0.00047 15.7 6.0 66 263-335 222-289 (369)
17 d2fiqa1 c.1.10.7 (A:1-420) Put 46.2 6.9 0.0005 15.5 6.3 60 34-107 20-86 (420)
18 d1m1nb_ c.92.2.3 (B:) Nitrogen 41.5 6.7 0.00049 15.6 2.1 37 77-119 127-163 (522)
19 d1ro7a_ c.130.1.1 (A:) Alpha-2 39.5 8.6 0.00062 14.8 2.8 27 208-234 131-157 (258)
20 d1jpdx1 c.1.11.2 (X:114-321) L 38.7 8.8 0.00064 14.7 3.0 12 45-56 24-35 (208)
21 d1pkla2 c.1.12.1 (A:1-87,A:187 38.7 8.8 0.00064 14.7 3.6 50 27-88 22-71 (258)
22 d1qh8b_ c.92.2.3 (B:) Nitrogen 38.6 7.9 0.00057 15.1 2.1 38 76-119 125-162 (519)
23 d1nqka_ c.1.16.4 (A:) Alkanesu 38.3 8.9 0.00065 14.7 2.9 53 310-371 307-359 (362)
24 d1h7na_ c.1.10.3 (A:) 5-aminol 38.0 7.8 0.00057 15.1 2.0 36 194-230 56-91 (340)
25 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 36.6 9.4 0.00069 14.5 2.5 21 211-231 144-164 (330)
26 d1nija1 c.37.1.10 (A:2-223) Hy 33.9 10 0.00076 14.2 3.7 15 317-331 167-181 (222)
27 d1krwa_ c.23.1.1 (A:) NTRC rec 33.1 11 0.00078 14.1 4.8 17 39-55 14-30 (123)
28 d1pv8a_ c.1.10.3 (A:) 5-aminol 33.0 9.7 0.00071 14.4 1.8 16 328-343 231-246 (320)
29 d1a3xa2 c.1.12.1 (A:1-87,A:189 32.8 11 0.00078 14.1 5.4 55 22-88 17-71 (265)
30 d1s99a_ d.58.48.2 (A:) Putativ 32.1 10 0.00076 14.1 1.9 12 179-190 71-82 (189)
31 d1rd5a_ c.1.2.4 (A:) Trp synth 31.8 11 0.00081 13.9 3.7 37 312-353 185-221 (261)
32 d1l6sa_ c.1.10.3 (A:) 5-aminol 31.7 9 0.00066 14.6 1.5 22 322-343 229-250 (323)
33 d2fug61 e.19.1.2 (6:15-175) NA 31.0 9.8 0.00072 14.3 1.6 53 25-80 20-78 (161)
34 d1ecwa_ a.61.1.1 (A:) SIV matr 30.9 11 0.00079 14.0 1.8 70 245-325 24-102 (114)
35 d1e0ta2 c.1.12.1 (A:1-69,A:168 30.8 12 0.00084 13.8 3.6 57 300-356 180-239 (246)
36 d1k77a_ c.1.15.5 (A:) Hypothet 30.7 11 0.00082 13.9 1.8 39 338-376 212-250 (260)
37 d2c1ha1 c.1.10.3 (A:10-328) 5- 29.6 12 0.00088 13.7 2.1 33 196-229 44-76 (319)
38 d2gola1 a.61.1.1 (A:7-107) HIV 29.4 6.1 0.00044 15.9 0.3 69 245-324 23-100 (101)
39 d1yira1 c.1.17.2 (A:145-399) N 29.1 12 0.00089 13.6 2.1 92 262-380 141-233 (255)
40 d1ub0a_ c.72.1.2 (A:) 4-amino- 29.1 12 0.0009 13.6 4.4 28 205-232 150-177 (258)
41 d1b5ta_ c.1.23.1 (A:) Methylen 28.4 13 0.00092 13.5 6.4 18 209-226 78-95 (275)
42 d1hfel1 c.96.1.1 (L:87-398) Fe 26.8 13 0.00098 13.3 2.1 28 32-59 32-59 (312)
43 d1miob_ c.92.2.3 (B:) Nitrogen 26.7 13 0.00098 13.3 2.2 38 76-119 79-116 (457)
44 d1vyra_ c.1.4.1 (A:) Pentaeryt 26.3 14 0.001 13.3 3.2 26 206-231 154-183 (363)
45 d1jaka1 c.1.8.6 (A:151-506) be 26.1 14 0.001 13.2 2.8 14 206-219 141-154 (356)
46 d1yqha1 d.58.48.1 (A:1-101) Hy 25.8 13 0.00095 13.4 1.4 56 191-256 8-63 (101)
47 d2h1qa1 c.67.3.1 (A:1-251) Hyp 25.2 8.1 0.00059 15.0 0.3 37 178-215 28-68 (251)
48 d1gkub3 e.10.1.1 (B:499-1054) 25.2 14 0.001 13.1 2.4 34 300-335 279-316 (556)
49 d1r6wa1 c.1.11.2 (A:100-320) O 23.7 15 0.0011 12.9 3.3 16 40-55 14-30 (221)
50 d1yhta1 c.1.8.6 (A:16-359) Dis 23.2 14 0.001 13.2 1.2 11 207-217 145-155 (344)
51 d1a1ia3 g.37.1.1 (A:160-187) Z 22.8 9.4 0.00068 14.5 0.3 19 187-205 3-21 (28)
52 d1vkfa_ c.1.29.1 (A:) Glycerol 22.8 16 0.0011 12.8 2.6 18 334-351 139-156 (172)
53 d2q02a1 c.1.15.4 (A:1-271) Put 22.8 16 0.0012 12.8 3.5 32 24-57 5-36 (271)
54 d1sc6a3 d.58.18.1 (A:327-410) 22.5 16 0.0012 12.8 3.8 59 209-267 23-84 (84)
55 d1ujpa_ c.1.2.4 (A:) Trp synth 22.5 16 0.0012 12.8 3.8 32 313-349 188-219 (271)
56 d3bofa1 c.1.21.2 (A:301-560) C 22.4 16 0.0012 12.8 7.1 82 179-272 15-96 (260)
57 d2i76a2 c.2.1.6 (A:2-154) Hypo 22.2 12 0.00089 13.6 0.7 67 4-76 1-67 (153)
58 d3ceda1 d.58.18.13 (A:247-341) 21.4 6.3 0.00046 15.8 -0.9 63 291-359 22-87 (95)
59 d1fuia2 c.85.1.1 (A:1-355) L-f 20.3 18 0.0013 12.5 4.7 109 214-326 125-238 (355)
No 1
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=9e-23 Score=186.30 Aligned_cols=191 Identities=18% Similarity=0.265 Sum_probs=141.7
Q ss_pred CCEEEEEECCCCCCCCCCCCHHH--HHH-HHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC
Q ss_conf 72578741233244681110012--213-76410058899988763101-3310587314541134113444--310002
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPY--TRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS 248 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~--~RG-~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~ 248 (469)
+..-||-|== |++.|+||.-+. .+. ....+-++.+++|++...+. +-+.|. ..|.|.+.++ ....+.
T Consensus 49 plsLYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~------~i~~GGGTPt~L~~~~l~ 121 (441)
T d1olta_ 49 PLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVS------QLHWGGGTPTYLNKAQIS 121 (441)
T ss_dssp CEEEEEEECE-ESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEE------EEEEEESCGGGSCHHHHH
T ss_pred CEEEEEEECC-CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC------EEEECCCCCCCCCHHHHH
T ss_conf 6289997289-788899895836548885509999999999999966761798503------038618884778999999
Q ss_pred HHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 1678862044430---0135442100010003665202211122013321114578998730333441146789998740
Q gi|255764472|r 249 DLLYSLSEIKGLV---RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 249 ~Ll~~l~~i~~~~---riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469)
.|+..+.+..... .+.+ -++|..++++.+..+++.+ +..+++++||+|++||+.|||.++.+++.++++.+|+.
T Consensus 122 ~ll~~l~~~~~~~~~~e~t~-E~~P~~~~~~~l~~l~~~G--~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~ 198 (441)
T d1olta_ 122 RLMKLLRENFQFNADAEISI-EVDPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI 198 (441)
T ss_dssp HHHHHHHHHSCEEEEEEEEE-EECSSSCCTHHHHHHHHTT--CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHCCCC-CCCCCCCCHHHHHHHHHHC--CCEEEECCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99998765223450000221-0234542057899999719--85599512001304554430578789999999987741
Q ss_pred CCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHH
Q ss_conf 1344-320000013522012478988633221011100200001112012321
Q gi|255764472|r 326 RPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 326 ~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~ 377 (469)
++ .+++|+|+|+||||.++|++|++.+.+++++++.+|+|+.+|+|.++.
T Consensus 199 --g~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q 249 (441)
T d1olta_ 199 --GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQ 249 (441)
T ss_dssp --TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGG
T ss_pred --CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHH
T ss_conf --442362354432377603778899989985088742232211246126766
No 2
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}
Probab=99.67 E-value=3.1e-16 Score=137.52 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=135.6
Q ss_pred ECCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 123324468111001221----3764100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 182 IQEGCDKFCTFCVVPYTR----GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 182 I~~GC~~~CsfC~ip~~R----G~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
.+.||++.|+||...... .+.+..++++|+++++.+.+.|++++.+.+-....+ +. ....+.++++.+.+.
T Consensus 46 ~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~---~~--~~~~~~~~i~~~~~~ 120 (312)
T d1r30a_ 46 KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH---ER--DMPYLEQMVQGVKAM 120 (312)
T ss_dssp ECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC---TT--THHHHHHHHHHHHHT
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC---HH--HHHHHHHHHHHCCCC
T ss_conf 1899888698399876689887642124557899999999974998999705777874---06--689999999852113
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 44300135442100010003665202211122013321114578998730333441146789998740134432000001
Q gi|255764472|r 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337 (469)
Q Consensus 258 ~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIv 337 (469)
. .++. ..+..++++.++.|++.+ |..+.++++|+ ++.++.+.++.+.++..+.++.++++ |+.+++.+|+
T Consensus 121 ~--~~~~---~~~~~l~~e~l~~lk~aG--~~~i~~~iEs~-~~~~~~~~~~~~~~~~~~~~~~a~~~--Gi~~~~~~i~ 190 (312)
T d1r30a_ 121 G--LEAC---MTLGTLSESQAQRLANAG--LDYYNHNLDTS-PEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIV 190 (312)
T ss_dssp T--SEEE---EECSSCCHHHHHHHHHHC--CCEEECCCBSC-HHHHHHHCCSSCHHHHHHHHHHHHHH--HCEEECCEEE
T ss_pred C--CEEE---ECCCCCHHHHHHHHHCCC--CEEEECCCCHH-HHHHCCCCCCCCHHHHHHHHHHHHHH--CCCEECCEEE
T ss_conf 6--3232---011110399988865346--00674211214-55533478999999999999999983--4663002575
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--HHHCCCHHEEECCCHHHHHCCCCCCHH
Q ss_conf 352201247898863322101--110020000111201232143688989
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIG--YAQAFSFKYSPRLGTPGSNMLEQVDEN 385 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~--~~~~~vf~yS~r~gT~Aa~m~~qV~~~ 385 (469)
|+ |||.+|..+++.++++++ ++.+.+|.|-|.||||-...+ .+++.
T Consensus 191 G~-~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~-~~~~~ 238 (312)
T d1r30a_ 191 GL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADND-DVDAF 238 (312)
T ss_dssp CS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCC-CCCHH
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC-CCCHH
T ss_conf 57-68679999999999855778876430541689984324456-89889
No 3
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=98.31 E-value=1.4e-05 Score=58.06 Aligned_cols=190 Identities=16% Similarity=0.227 Sum_probs=112.1
Q ss_pred EEEECCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHH
Q ss_conf 87412332446811100122137-------64100588999887631013310587314541134113444310002167
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGI-------EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~-------~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll 251 (469)
.|.|..-||.+|+||-....++. ..-.+++++.+-++.+.+.|+..+.++| |.-+ -...+.+++
T Consensus 15 ~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~G-------GEp~--l~~~~~e~i 85 (327)
T d1tv8a_ 15 RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG-------GEPL--MRRDLDVLI 85 (327)
T ss_dssp EEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES-------SCGG--GSTTHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------CCCC--CCCCHHHHH
T ss_conf 9972210089694789760167777647721459999999999999875983897379-------8612--466479999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8862044430013544210001000366520221112201332111457899873-033344114678999874013443
Q gi|255764472|r 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSM-NRRHTAYEYRQIIDRIRSVRPDIA 330 (469)
Q Consensus 252 ~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M-~R~~~~e~~~~~i~~~r~~~p~~~ 330 (469)
....+..+... ....+-..++++.++.+.+.+ ...+-+++++.++..-..+ +++...+...+.++.+.++-..+.
T Consensus 86 ~~~~~~~~~~~--~~~Tng~ll~~~~~~~l~~~g--~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~~~ 161 (327)
T d1tv8a_ 86 AKLNQIDGIED--IGLTTNGLLLKKHGQKLYDAG--LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVK 161 (327)
T ss_dssp HHHTTCTTCCE--EEEEECSTTHHHHHHHHHHHT--CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 98754212220--134443111206799999839--98786202568787764510203542112368999998599863
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHH
Q ss_conf 2000001352201247898863322101110020000111201232143688989
Q gi|255764472|r 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 (469)
Q Consensus 331 i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~ 385 (469)
+.+.+ .++....+..+.++++....++ +..+.+++..+.........++..
T Consensus 162 ~~~~v---~~~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 212 (327)
T d1tv8a_ 162 VNVVI---QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKD 212 (327)
T ss_dssp EEEEE---CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHH
T ss_pred EEEEE---ECCCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCCHH
T ss_conf 25898---5683531008999999740654-101353114675543322344288
No 4
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=95.60 E-value=0.083 Score=29.84 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=53.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 60799995798568878999999999879868776--------------0108899992783250799999999999998
Q gi|255764472|r 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 (469)
Q Consensus 24 ~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~ 89 (469)
+-||.+-|+|.-.-..=...+...|...||+++.- .++||++.|. +........+...+..+++
T Consensus 37 ~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iS--s~~~~~~~~~~~l~~~L~~ 114 (168)
T d7reqa2 37 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVS--SLAGGHLTLVPALRKELDK 114 (168)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEE--ECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHH
T ss_conf 98699995786177899999999998678514207876768999999971599889995--5765336799999999985
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 7676642189818999647301087889874100110011001
Q gi|255764472|r 90 LKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQT 132 (469)
Q Consensus 90 ~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~ 132 (469)
. ..++..|+++|-.|...-+++.+ . ++|.++|++.
T Consensus 115 ~------g~~~v~VivGG~ip~~d~~~l~~-~-Gv~~iF~pgt 149 (168)
T d7reqa2 115 L------GRPDILITVGGVIPEQDFDELRK-D-GAVEIYTPGT 149 (168)
T ss_dssp T------TCTTSEEEEEESCCGGGHHHHHH-H-TEEEEECTTC
T ss_pred C------CCCCEEEEEECCCCHHHHHHHHH-C-CCCEEECCCC
T ss_conf 6------99971899838989899999996-8-9787979689
No 5
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=94.17 E-value=0.19 Score=27.15 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHCCCEECCCC-------------CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 45776079999579856-88789999999998798687760-------------10889999278325079999999999
Q gi|255764472|r 20 QCIVPQRFFVKSYGCQM-NVYDSLRMEDMFFSQGYERVNSM-------------DDADLIVLNTCHIREKAAEKVYSFLG 85 (469)
Q Consensus 20 ~~~~~kkv~i~TlGC~~-N~~Dse~i~~~L~~~G~~~~~~~-------------~~ADviiINTCsV~~~ae~k~~~~i~ 85 (469)
.+.-| |+++-++|=.. -..=+....+.|...||+.++.. .+||+++| |+--..-....-..+.
T Consensus 32 ~g~rP-~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~~~e~v~aa~~~~a~vvvi--cssd~~y~~~~~~~~~ 108 (163)
T d7reqb2 32 VSERP-KVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAK 108 (163)
T ss_dssp SSSCC-BCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 28998-69987679744300079999999981686015688889489999999479988998--4576104878999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 999876766421898189996473010878898741001100110011131688875
Q gi|255764472|r 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 (469)
Q Consensus 86 ~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~ 142 (469)
.+++ .+++.+++++|--+....+.+.+ -+||.+++.+. ++.+.++.
T Consensus 109 aLk~-------ag~~~~vlaGg~~~~~d~~~l~~--aGVd~~i~~G~--d~~~~l~~ 154 (163)
T d7reqb2 109 ALKA-------AGAKALYLSGAFKEFGDDAAEAE--KLIDGRLFMGM--DVVDTLSS 154 (163)
T ss_dssp HHHH-------TTCSEEEEESCGGGGGGGHHHHH--HHCCEEECTTC--CHHHHHHH
T ss_pred HHHH-------CCCCEEEEEECCCCCCCHHHHHH--CCCCEEECCCC--CHHHHHHH
T ss_conf 9985-------64560589706888235999996--79876841997--69999999
No 6
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=92.79 E-value=0.2 Score=26.93 Aligned_cols=55 Identities=35% Similarity=0.449 Sum_probs=43.3
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 79789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
.|+++++-+|+.+ ..|.-+++.+ ..++|. ....+|+.+.++|+.....+..|++|
T Consensus 15 ~g~~~~v~I~~l~-~~G~Giar~~--g~vvfV-~~alPGe~V~v~I~k~kk~~~~a~~v 69 (69)
T d1yvca1 15 AGKEYEVTIEDMG-KGGDGIARID--GFVVFV-PNAEKGSVINVKVTAVKEKFAFAERV 69 (69)
T ss_dssp TTCEEEEECCEEC-TTSCEEEEET--TEEEEE-TTCCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCEEEEEEEECC-CCCCEEEEEC--CEEEEE-CCCCCCCEEEEEEEEECCCCEEEEEC
T ss_conf 9999999999877-8986999989--999994-99889999999999952885999989
No 7
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=91.63 E-value=0.36 Score=25.07 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=42.7
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 79789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
.|+.+++-+++.+ ..|.-+++.+ ..++|. ....+|+.+.|+|+.....+.+|+++
T Consensus 13 ~g~~~~l~I~~l~-~~G~Gi~~~~--g~vvfV-~galpGe~v~v~i~k~kk~~~~a~vv 67 (68)
T d1yeza1 13 EGEVYDVTIQDIA-RQGDGIARIE--GFVIFV-PGTKVGDEVRIKVERVLPKFAFASVV 67 (68)
T ss_dssp TTEEEEEECCEEE-TTTEEEEEET--TEEEEE-ESCCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCEEEEEEEECC-CCCCEEEEEC--CEEEEE-CCCCCCCEEEEEEEEEECCEEEEEEE
T ss_conf 9999999999877-8986999989--999995-99889989999999970885999993
No 8
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=87.77 E-value=0.8 Score=22.49 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=39.9
Q ss_pred CEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 412 QIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 412 ~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
+.+++-++..+ ..|.-+|+.+. .++|. ....+|+.+.|+|+.....+..|+++
T Consensus 1 q~i~v~I~~l~-~~G~Gv~r~~g--~vvfV-~~alPGE~V~v~i~~~~~~~~~a~~~ 53 (60)
T d1uwva1 1 QIITVSVNDLD-SFGQGVARHNG--KTLFI-PGLLPQENAEVTVTEDKKQYARAKVV 53 (60)
T ss_dssp CCEEEEEEEEC-TTSEEEEEETT--EEEEE-ETCCTTCEEEEEEEEECSSEEEEEEE
T ss_pred CEEEEEEEECC-CCCCEEEEECC--EEEEE-CCCCCCCEEEEEEEEECCCEEEEEEE
T ss_conf 98999999888-99769999999--99997-99999989999999960984899999
No 9
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=77.97 E-value=1 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 352201247898863322101110
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQ 361 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~ 361 (469)
.+||+-+=||.+-++.+++..++-
T Consensus 218 ~~pG~G~id~~~~~~~l~~~gy~G 241 (278)
T d1i60a_ 218 VWPGQGAIDLDAHLSALKEIGFSD 241 (278)
T ss_dssp ESTTSSSSCHHHHHHHHHHTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 489886549999999999979971
No 10
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=73.92 E-value=1.4 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 058899988763101331058731
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLG 229 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469)
+++.++++++.+++.|++-|.|=|
T Consensus 58 Sid~l~~~ie~~~~lGI~av~LFp 81 (329)
T d1gzga_ 58 SIDQLLIEAEEWVALGIPALALFP 81 (329)
T ss_dssp EHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899999999888753864699986
No 11
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.85 E-value=1.3 Score=20.82 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 058899988763101
Q gi|255764472|r 206 SLSQVVDEARKLIDN 220 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~ 220 (469)
=+++|++|+..+-..
T Consensus 134 f~~~v~~E~~~lF~~ 148 (362)
T d2gjxa1 134 FMSTFFLEVSSVFPD 148 (362)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 899999999885146
No 12
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=65.60 E-value=3.3 Score=17.84 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=21.7
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 21678862044430013544210001000366520221112
Q gi|255764472|r 248 SDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLM 288 (469)
Q Consensus 248 ~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~ 288 (469)
.+|.+++.+.+.+. ....+|..++.++|+...+.+-++
T Consensus 81 ~el~k~l~DADivI---~~pf~~~~lt~e~i~~ap~LKlI~ 118 (186)
T d2naca2 81 SVFERELVDADVVI---SQPFWPAYLTPERIAKAKNLKLAL 118 (186)
T ss_dssp SHHHHHHTTCSEEE---EBTTBCCCBCHHHHHHCTTCCEEE
T ss_pred HHHHHHCCCCCEEE---EECCCCCCCCHHHHHCCCCCEEEE
T ss_conf 89986235687899---814645232999983482210999
No 13
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=64.37 E-value=3.6 Score=17.59 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=55.1
Q ss_pred EEEEEEEC-CCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 07999957-98568878999999999879868776--------------0108899992783250799999999999998
Q gi|255764472|r 25 QRFFVKSY-GCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 (469)
Q Consensus 25 kkv~i~Tl-GC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~ 89 (469)
+||-+-|. |+.+... ...++..|+..||++.+- ...+|++.+ |++.+... ..+...+..+++
T Consensus 4 ~kVvi~~~~gD~H~lG-~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~l-S~~~~~~~-~~~~~~~~~l~~ 80 (137)
T d1ccwa_ 4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQGE-IDCKGLRQKCDE 80 (137)
T ss_dssp CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTHH-HHHTTHHHHHHH
T ss_pred CEEEEEECCCCHHHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE-EECCCCCH-HHHHHHHHHHHH
T ss_conf 8799995498835889-99999999978976772234569999999998439877887-51144114-779999999987
Q ss_pred HHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHC--CCCCCCCCH
Q ss_conf 76766421898189996473010--8788987410--011001100
Q gi|255764472|r 90 LKNSRIKEGGDLLVVVAGCVAQA--EGEEILRRSP--IVNVVVGPQ 131 (469)
Q Consensus 90 ~~~~~~k~~p~~~IvVtGC~aq~--~~e~l~~~~p--~vd~vig~~ 131 (469)
+...+.+|+|+|-.+.. .+.++..++. ++|.+++++
T Consensus 81 ------~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~ 120 (137)
T d1ccwa_ 81 ------AGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPG 120 (137)
T ss_dssp ------TTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTT
T ss_pred ------HCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCC
T ss_conf ------3148987999478677764618789999976978898999
No 14
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}
Probab=53.42 E-value=4.5 Score=16.91 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=11.4
Q ss_pred CCCCCC-HHHHHHHHH-HHHHHHHHHH
Q ss_conf 436889-899999999-9999999999
Q gi|255764472|r 378 MLEQVD-ENVKAERLL-CLQKKLREQQ 402 (469)
Q Consensus 378 m~~qV~-~~vk~~R~~-~l~~~~~~~~ 402 (469)
.-+.|+ ......|+- ++..++++..
T Consensus 400 W~E~i~~~~~l~~~~~PRl~A~AE~~W 426 (443)
T d1qbaa3 400 WSETQRTDPQMEYMIFPRALSVAERSW 426 (443)
T ss_dssp CCTTCCSHHHHHHHHTTHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 878989999999999889999999986
No 15
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.13 E-value=6.4 Score=15.72 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 588999887631
Q gi|255764472|r 207 LSQVVDEARKLI 218 (469)
Q Consensus 207 ~~~Iv~ei~~l~ 218 (469)
++++++|+..+-
T Consensus 134 ~~~v~~e~~~~F 145 (353)
T d1nowa1 134 LTTFFKEISEVF 145 (353)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999861
No 16
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.80 E-value=6.5 Score=15.68 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf 1354421000100036652022111220133211145789987303334411467899987401--344320000
Q gi|255764472|r 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDF 335 (469)
Q Consensus 263 iR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~--p~~~i~tdi 335 (469)
.|-..-+|..++|+.++++++.+-+. ++- .-+.-|.. ..+.+.+++.+-++.+.+.. -.+.|++||
T Consensus 222 ~ral~~h~RNl~De~l~aIa~~GGvi-----Gi~-~~~~fl~~-~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDf 289 (369)
T d1itua_ 222 AYSVCASRRNVPDDVLRLVKQTDSLV-----MVN-FYNNYISC-TNKANLSQVADHLDHIKEVAGARAVGFGGDF 289 (369)
T ss_dssp BTTTSCCTTSBCHHHHHHHHHHTCEE-----EEC-CCHHHHTS-SSCCBHHHHHHHHHHHHHHHCGGGEEECCCT
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCCEE-----EEE-CCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 66540333389989999999659748-----885-05642123-3023689999999999987095217986567
No 17
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1 GatZ {Escherichia coli [TaxId: 562]}
Probab=46.20 E-value=6.9 Score=15.51 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 85688789999999998798687760108899992783-------25079999999999999876766421898189996
Q gi|255764472|r 34 CQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCH-------IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 34 C~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCs-------V~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
|..|- ..+.+.|... ...++.+.|.-||. -|.-+-+.....+.++... ..-|...|+++
T Consensus 20 Csa~p---~Vi~Aal~~a------~~~~~pvlieAT~NQVnq~GGYtGmtp~dF~~~V~~iA~~-----~g~~~~~iiLg 85 (420)
T d2fiqa1 20 CSAHP---LVIEAALAFD------RNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADK-----VGFARERIILG 85 (420)
T ss_dssp CCCCH---HHHHHHHHHT------TTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHH-----HTCCGGGEEEE
T ss_pred CCCCH---HHHHHHHHHH------HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCHHHEEEE
T ss_conf 78999---9999999999------8549978998031112567897899889999999999987-----29966608972
Q ss_pred C
Q ss_conf 4
Q gi|255764472|r 107 G 107 (469)
Q Consensus 107 G 107 (469)
|
T Consensus 86 g 86 (420)
T d2fiqa1 86 G 86 (420)
T ss_dssp E
T ss_pred C
T ss_conf 5
No 18
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]}
Probab=41.45 E-value=6.7 Score=15.59 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 9999999999998767664218981899964730108788987
Q gi|255764472|r 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 77 e~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
++++.+.|..+.+ +-+|.+..|+++|+++.-++++..
T Consensus 127 ~~kL~e~I~~~~~------~~~P~~I~V~tTC~~eiIGDDi~a 163 (522)
T d1m1nb_ 127 QQNMKDGLQNCKA------TYKPDMIAVSTTCMAEVIGDDLNA 163 (522)
T ss_dssp HHHHHHHHHHHHH------HHCCSEEEEEECHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHCCCHHH
T ss_conf 8889999999999------749989999778789884079999
No 19
>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII {Campylobacter jejuni [TaxId: 197]}
Probab=39.50 E-value=8.6 Score=14.79 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 889998876310133105873145411
Q gi|255764472|r 208 SQVVDEARKLIDNGVCEITLLGQNVNA 234 (469)
Q Consensus 208 ~~Iv~ei~~l~~~G~kEi~L~g~d~~~ 234 (469)
...+.-+..+...|+|||.|+|.|...
T Consensus 131 s~g~~alqiA~~LGfKeIYLlG~D~y~ 157 (258)
T d1ro7a_ 131 TSGVYMCAVAIALGYKEIYLSGIDFYQ 157 (258)
T ss_dssp CHHHHHHHHHHHHTCCEEEEESCCTTT
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 799999999998599889998202687
No 20
>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=38.73 E-value=8.8 Score=14.71 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.5
Q ss_pred HHHHHHCCCEEC
Q ss_conf 999998798687
Q gi|255764472|r 45 EDMFFSQGYERV 56 (469)
Q Consensus 45 ~~~L~~~G~~~~ 56 (469)
+..+.+.||...
T Consensus 24 a~~~~~~G~~~~ 35 (208)
T d1jpdx1 24 ASTLWQAGAKLL 35 (208)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHCCCCEE
T ss_conf 999997799989
No 21
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}
Probab=38.67 E-value=8.8 Score=14.70 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99995798568878999999999879868776010889999278325079999999999999
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~ 88 (469)
==+-|+|=+-+ +..+...|...|. |+.=||..-=+.+.-++..+.|+++.
T Consensus 22 KIIaTiGPas~---~~~~l~~li~aGv---------dv~RiN~SHg~~e~~~~~i~~iR~~~ 71 (258)
T d1pkla2 22 RIICTIGPSTQ---SVEALKGLIQSGM---------SVARMNFSHGSHEYHQTTINNVRQAA 71 (258)
T ss_dssp EEEEECCGGGC---SHHHHHHHHHHTE---------EEEEEETTSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCC---CHHHHHHHHHCCC---------CEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 48985188869---9999999998599---------88999799799999999999999999
No 22
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}
Probab=38.59 E-value=7.9 Score=15.06 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999999999998767664218981899964730108788987
Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
.++++.+.|..+.+ +-+|....|+++|+++.-++++..
T Consensus 125 G~~~L~~~i~~~~~------~~~P~~I~V~tTC~~eiIGDDl~~ 162 (519)
T d1qh8b_ 125 GNNNMNLGLQNASA------LYKPEIIAVSTTCMAEVIGDDLQA 162 (519)
T ss_dssp SHHHHHHHHHHHHH------HHCCSEEEEEECHHHHHHTCCHHH
T ss_pred CHHHHHHHHHHHHH------HCCCCEEEEECCCCHHHCCCCHHH
T ss_conf 48889999999998------549978999467774017779999
No 23
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]}
Probab=38.33 E-value=8.9 Score=14.66 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 34411467899987401344320000013522012478988633221011100200001112
Q gi|255764472|r 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 (469)
Q Consensus 310 ~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~ 371 (469)
.|.+++.+.+..+++. | +..=+|.|+|.+ ++.-+|.+++-+--=...+..|+|
T Consensus 307 Gtpe~V~e~L~~~~~~--G--~d~~~l~~~~~~-----~~l~~f~eeV~P~l~~~~~~~~~~ 359 (362)
T d1nqka_ 307 GDGPTVAARINEYAAL--G--IDSFVLSGYPHL-----EEAYRVGELLFPLLDVAIPEIPQP 359 (362)
T ss_dssp EEHHHHHHHHHHHHTT--T--CCEEEEECSSHH-----HHHHHHHHHTGGGSCBCCCCCCCC
T ss_pred ECHHHHHHHHHHHHHC--C--CCEEEEECCCCH-----HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5899999999999972--9--998999489998-----999999998999870135067899
No 24
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.02 E-value=7.8 Score=15.10 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 0012213764100588999887631013310587314
Q gi|255764472|r 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 194 ~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469)
.||..-|-+| .+++.++++++.+++.|++-|.|-|.
T Consensus 56 ~I~SMPGi~R-~Sid~L~~eie~~~~lGI~av~LF~v 91 (340)
T d1h7na_ 56 EIDSLPNINR-IGVNRLKDYLKPLVAKGLRSVILFGV 91 (340)
T ss_dssp ECTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ECCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 4689999744-18999999999999869981215898
No 25
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.60 E-value=9.4 Score=14.48 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.6
Q ss_pred HHHHHHHHHCCCCEEEEECCC
Q ss_conf 998876310133105873145
Q gi|255764472|r 211 VDEARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 211 v~ei~~l~~~G~kEi~L~g~d 231 (469)
++-++...+.|+-=|.|.+-+
T Consensus 144 ~~aA~ra~~AGfDgVEIh~ah 164 (330)
T d1ps9a1 144 ARCAQLAREAGYDGVEVMGSE 164 (330)
T ss_dssp HHHHHHHHHTTCSEEEEEECB
T ss_pred HHHHHHHHHHCCCEEEECCCH
T ss_conf 999999998496756410036
No 26
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.85 E-value=10 Score=14.17 Aligned_cols=15 Identities=7% Similarity=0.390 Sum_probs=8.4
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 789998740134432
Q gi|255764472|r 317 QIIDRIRSVRPDIAI 331 (469)
Q Consensus 317 ~~i~~~r~~~p~~~i 331 (469)
.+.+.+|+..|.+.+
T Consensus 167 ~~~~~l~~lNP~a~I 181 (222)
T d1nija1 167 KLHERLARINARAPV 181 (222)
T ss_dssp HHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999997079849
No 27
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=33.07 E-value=11 Score=14.08 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHCCCEE
Q ss_conf 78999999999879868
Q gi|255764472|r 39 YDSLRMEDMFFSQGYER 55 (469)
Q Consensus 39 ~Dse~i~~~L~~~G~~~ 55 (469)
.-.+.+...|...||+.
T Consensus 14 ~~~~~l~~~L~~~g~~v 30 (123)
T d1krwa_ 14 SIRWVLERALAGAGLTC 30 (123)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 99999999999779989
No 28
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.97 E-value=9.7 Score=14.39 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=6.8
Q ss_pred CCCCCEEEECCCCCCH
Q ss_conf 4432000001352201
Q gi|255764472|r 328 DIAISSDFIVGFPGET 343 (469)
Q Consensus 328 ~~~i~tdiIvGfPgET 343 (469)
++.=++|++.==|+-+
T Consensus 231 D~~EGAD~lMVKPa~~ 246 (320)
T d1pv8a_ 231 DVREGADMLMVKPGMP 246 (320)
T ss_dssp HHHTTCSBEEEESCGG
T ss_pred HHHCCCCEEEEEHHHH
T ss_conf 8754876576204688
No 29
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.81 E-value=11 Score=14.05 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=32.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 7760799995798568878999999999879868776010889999278325079999999999999
Q gi|255764472|r 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88 (469)
Q Consensus 22 ~~~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~ 88 (469)
-|.|.==+-|+|=+-+..| +...|...|. |+.=+|..-=+.+.-++..+.++++.
T Consensus 17 ~mRrTKIIaTiGPas~~~e---~l~~li~aG~---------dv~RlN~SHg~~~~h~~~i~~iR~~~ 71 (265)
T d1a3xa2 17 DLRRTSIIGTIGPKTNNPE---TLVALRKAGL---------NIVRMNFSHGSYEYHKSVIDNARKSE 71 (265)
T ss_dssp SCCCSEEEEECCTTTCSHH---HHHHHHHHTE---------EEEEEETTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHH---HHHHHHHCCC---------CEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 7637607983278879999---9999998699---------99999788799999999999999985
No 30
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=32.09 E-value=10 Score=14.14 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=9.7
Q ss_pred EEEECCCCCCCC
Q ss_conf 874123324468
Q gi|255764472|r 179 FLTIQEGCDKFC 190 (469)
Q Consensus 179 ~ikI~~GC~~~C 190 (469)
-+++++|||.-|
T Consensus 71 ~~t~S~GCPGe~ 82 (189)
T d1s99a_ 71 NGTFSIGCPGDT 82 (189)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEECCCCCCC
T ss_conf 999846798998
No 31
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}
Probab=31.77 E-value=11 Score=13.93 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 411467899987401344320000013522012478988633
Q gi|255764472|r 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 312 ~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
..+..+.++++|+.. + .-+.|||==.|.||.++..++
T Consensus 185 ~~~~~~~i~~ik~~t-~----~Pi~vGFGI~~~e~v~~~~~~ 221 (261)
T d1rd5a_ 185 NPRVESLIQEVKKVT-N----KPVAVGFGISKPEHVKQIAQW 221 (261)
T ss_dssp CTHHHHHHHHHHHHC-S----SCEEEESCCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC-C----CCEEEECCCCCHHHHHHHHHC
T ss_conf 157999998762036-7----876998177999999999865
No 32
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=9 Score=14.62 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=9.2
Q ss_pred HHHHCCCCCCCEEEECCCCCCH
Q ss_conf 8740134432000001352201
Q gi|255764472|r 322 IRSVRPDIAISSDFIVGFPGET 343 (469)
Q Consensus 322 ~r~~~p~~~i~tdiIvGfPgET 343 (469)
+|+..-++.=++|++.==||-+
T Consensus 229 ~~e~~~d~~EGAD~lmVKPa~~ 250 (323)
T d1l6sa_ 229 IRESLLDEAQGADCLMVKPAGA 250 (323)
T ss_dssp HHHHHHHHHTTCSBEEEESCTT
T ss_pred HHHHHHHHHHCCCEEEECCCHH
T ss_conf 8999998862566588533135
No 33
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=30.98 E-value=9.8 Score=14.34 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEEEECCCCCCHHHHHHHH-----HHHHHCCCE-ECCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 079999579856887899999-----999987986-87760108899992783250799999
Q gi|255764472|r 25 QRFFVKSYGCQMNVYDSLRME-----DMFFSQGYE-RVNSMDDADLIVLNTCHIREKAAEKV 80 (469)
Q Consensus 25 kkv~i~TlGC~~N~~Dse~i~-----~~L~~~G~~-~~~~~~~ADviiINTCsV~~~ae~k~ 80 (469)
+..|..+||| +=-+.|.+. ..+...|.+ .+.+|.+||+++|. =+||.+.....
T Consensus 20 ~Slw~~~~g~--~cC~iE~~a~~~p~yD~eRfG~~~~~~sPR~ADvllVt-G~vT~km~~~l 78 (161)
T d2fug61 20 NSLWPATFGL--ACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVA-GRLSKKMAPVM 78 (161)
T ss_dssp HCCCCCCEEC--SHHHHHTGGGCCC-----------------CCCCEEEE-SCCBTTTHHHH
T ss_pred CCCCEEECCC--CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEE-CCCHHHHHHHH
T ss_conf 8873002055--63087775313876656662342357886547678970-63308889999
No 34
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=30.91 E-value=11 Score=14.03 Aligned_cols=70 Identities=10% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHH---------HHHHCCCCCCCHH
Q ss_conf 0002167886204443001354421000100036652022111220133211145789---------9873033344114
Q gi|255764472|r 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI---------LKSMNRRHTAYEY 315 (469)
Q Consensus 245 ~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~v---------Lk~M~R~~~~e~~ 315 (469)
..+..|..+-.++ .|+ .+++.|++.-..+.+++..+.-.+|.||... |--.+++..+.|.
T Consensus 24 Y~lKHlvWAsrEL---eRf--------alnp~LLeT~eGC~qIl~qlqP~l~TGSeeLkSL~ntvavLyCVH~~i~VkDT 92 (114)
T d1ecwa_ 24 YMLKHVVWAANEL---DRF--------GLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHT 92 (114)
T ss_dssp CCHHHHHHHHHHH---HHT--------TCCGGGGGSHHHHHHHHHHHGGGGGGCCHHHHHHHHHHHHHHHHHTTCCCSBH
T ss_pred HHHHHHHHHHHHH---HHH--------CCCCHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 2246788889988---875--------47940332599999999984755555628776399888886300038611637
Q ss_pred HHHHHHHHHH
Q ss_conf 6789998740
Q gi|255764472|r 316 RQIIDRIRSV 325 (469)
Q Consensus 316 ~~~i~~~r~~ 325 (469)
.++.+++.+.
T Consensus 93 kEA~~kv~~~ 102 (114)
T d1ecwa_ 93 EEAKQIVQRH 102 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 35
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.79 E-value=12 Score=13.82 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHCCCC--CCCHHHHHHHHHHHHCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHH
Q ss_conf 78998730333--4411467899987401344320000-013522012478988633221
Q gi|255764472|r 300 DRILKSMNRRH--TAYEYRQIIDRIRSVRPDIAISSDF-IVGFPGETDDDFRATMDLVDK 356 (469)
Q Consensus 300 ~~vLk~M~R~~--~~e~~~~~i~~~r~~~p~~~i~tdi-IvGfPgETeedf~~Tl~~i~~ 356 (469)
..+|..|-... |+.+.-++...+..-...+.++.-- +--||-|+-+.......-.++
T Consensus 180 Tq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~~P~~~v~~l~~i~~~~E~ 239 (246)
T d1e0ta2 180 TMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR 239 (246)
T ss_dssp CC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 443455650899856889999999994896899756012687999999999999999997
No 36
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}
Probab=30.69 E-value=11 Score=13.89 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf 352201247898863322101110020000111201232
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
+.|||-+-||..-++.++++.++---..-|.|+.+|.++
T Consensus 212 ~~pG~G~id~~~i~~~L~~~GY~G~vs~E~~p~~~~~~~ 250 (260)
T d1k77a_ 212 HEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLTEEG 250 (260)
T ss_dssp CCSSSSSSCHHHHHHHHHHTTCCSCEEECCCCSSCTGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 899895419999999999829980699986658997777
No 37
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]}
Probab=29.60 E-value=12 Score=13.68 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 1221376410058899988763101331058731
Q gi|255764472|r 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 (469)
Q Consensus 196 p~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469)
|..-|-+| .+++.++++++.+++.|++-|.|=+
T Consensus 44 ~SMPGi~R-~Sid~L~~~ie~~~~lGI~av~LFp 76 (319)
T d2c1ha1 44 SSMPGSFR-FTIDRAVEECKELYDLGIQGIDLFG 76 (319)
T ss_dssp TTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCE-ECHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 89998634-0899999999999965586899973
No 38
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=29.38 E-value=6.1 Score=15.89 Aligned_cols=69 Identities=16% Similarity=0.388 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHH---------HHHHCCCCCCCHH
Q ss_conf 0002167886204443001354421000100036652022111220133211145789---------9873033344114
Q gi|255764472|r 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI---------LKSMNRRHTAYEY 315 (469)
Q Consensus 245 ~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~v---------Lk~M~R~~~~e~~ 315 (469)
..+..|..+-.++ .| | .+++.|++.-..+.+++.+++-.+|.||... |--.+.+..+.|.
T Consensus 23 Y~lKHlvWasrEL---eR--F------alnp~LLeT~eGC~qil~qlqP~l~TGSeeLkSL~ntvavLyCVH~~I~VkDT 91 (101)
T d2gola1 23 YKLKHIVWASREL---ER--F------AVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDT 91 (101)
T ss_dssp CCHHHHHHHHHHH---HH--T------TBCGGGGGSHHHHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHTTCCCSBH
T ss_pred HHHHHHHHHHHHH---HH--H------CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCEEEEEEEECCCCCCCH
T ss_conf 0014555567788---77--6------26940233599999999984634544738888675132257877348323726
Q ss_pred HHHHHHHHH
Q ss_conf 678999874
Q gi|255764472|r 316 RQIIDRIRS 324 (469)
Q Consensus 316 ~~~i~~~r~ 324 (469)
.++++++.+
T Consensus 92 kEAl~kiee 100 (101)
T d2gola1 92 KEALDKIEE 100 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
T ss_conf 999988743
No 39
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.14 E-value=12 Score=13.62 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCCEEEECCCC
Q ss_conf 01354421000100036652022111220133211145789987303334411467899987401-34432000001352
Q gi|255764472|r 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFP 340 (469)
Q Consensus 262 riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~-p~~~i~tdiIvGfP 340 (469)
-+|+-|-+|..+..+.++.+.+.+ +-|.-++-++|.+.. .+...++.+..+.+. ..+.++|.++.+++
T Consensus 141 GVRlDSGD~~~~~~~~~~~l~~~g-~~~~~k~iI~sdgl~----------~e~i~~~l~~~~~~~~~~FGVGT~L~t~~~ 209 (255)
T d1yira1 141 GLRHDSGDPLLWAEKTIAHYLKLG-IDPLTKTLVFSDGLD----------LPRALKIYRALQGRINVSFGIGTHFTCDLP 209 (255)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHT-CCGGGSEEEECSSCC----------HHHHHHHHHHHTTTSEEEEEECHHHHSCCT
T ss_pred CEECCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCC----------HHHHHHHHHHCCCCCCEEECCCCEEEECCC
T ss_conf 433388555569999999999869-997652899728999----------899999999704786235425764541688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCC
Q ss_conf 2012478988633221011100200001112012321436
Q gi|255764472|r 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 (469)
Q Consensus 341 gETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~ 380 (469)
+.. .+++ |++-..-.|.|..++.+
T Consensus 210 ~~p------~l~~----------VyKLve~~g~P~~KlS~ 233 (255)
T d1yira1 210 GVE------PMNI----------VVKMSACNGHPVAKISD 233 (255)
T ss_dssp TCC------CCCE----------EEEEEEETTEECCCCCS
T ss_pred CCC------CCCE----------EEEEEEECCEEEEEECC
T ss_conf 999------7527----------99988779975665248
No 40
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}
Probab=29.07 E-value=12 Score=13.61 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 0058899988763101331058731454
Q gi|255764472|r 205 RSLSQVVDEARKLIDNGVCEITLLGQNV 232 (469)
Q Consensus 205 r~~~~Iv~ei~~l~~~G~kEi~L~g~d~ 232 (469)
.+.+++.+-++.+.+.|.+.++++|-+.
T Consensus 150 ~~~~d~~~aa~~L~~~g~~~Vlitg~~~ 177 (258)
T d1ub0a_ 150 RTLKEAEEAAKALLALGPKAVLLKGGHL 177 (258)
T ss_dssp CSHHHHHHHHHHHHTTSCSCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9989999999999973897699821343
No 41
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}
Probab=28.35 E-value=13 Score=13.53 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHCCCCEEE
Q ss_conf 899988763101331058
Q gi|255764472|r 209 QVVDEARKLIDNGVCEIT 226 (469)
Q Consensus 209 ~Iv~ei~~l~~~G~kEi~ 226 (469)
.+.+.+..+.+.|+++|.
T Consensus 78 ~l~~~l~~~~~~GI~niL 95 (275)
T d1b5ta_ 78 ELRTIARDYWNNGIRHIV 95 (275)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHCEEE
T ss_conf 799999889997317277
No 42
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=26.79 E-value=13 Score=13.33 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 7985688789999999998798687760
Q gi|255764472|r 32 YGCQMNVYDSLRMEDMFFSQGYERVNSM 59 (469)
Q Consensus 32 lGC~~N~~Dse~i~~~L~~~G~~~~~~~ 59 (469)
||.+-..+....|...|..-||.-|-+.
T Consensus 32 fg~~~~~~~~~kl~~~Lk~lGF~~V~d~ 59 (312)
T d1hfel1 32 FGMPVGSVTTGKMLAALQKLGFAHCWDT 59 (312)
T ss_dssp GTCCTTCCCHHHHHHHHHHHTCSEECCH
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 4999243478999999997699899974
No 43
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]}
Probab=26.68 E-value=13 Score=13.32 Aligned_cols=38 Identities=13% Similarity=0.321 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999999999998767664218981899964730108788987
Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
.++|..+.|.++.+ +-+|.+..|+++|.+..-++++..
T Consensus 79 g~~kL~~~i~~~~~------~~~P~~I~v~~tC~~~iIGdDi~~ 116 (457)
T d1miob_ 79 GGSNIKTAVKNIFS------LYNPDIIAVHTTCLSETLGDDLPT 116 (457)
T ss_dssp SHHHHHHHHHHHHH------HTCCSEEEEEECHHHHHHTCCHHH
T ss_pred CHHHHHHHHHHHHH------HCCCCEEEEECCCCHHHCCCCHHH
T ss_conf 58999999999998------439978999647745215888889
No 44
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}
Probab=26.26 E-value=14 Score=13.27 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHH----HHHHHHCCCCEEEEECCC
Q ss_conf 05889998----876310133105873145
Q gi|255764472|r 206 SLSQVVDE----ARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 206 ~~~~Iv~e----i~~l~~~G~kEi~L~g~d 231 (469)
.+++|++. ++...+.|+.=|-|.+-+
T Consensus 154 eI~~ii~~f~~AA~rA~~aGfDgVEIH~ah 183 (363)
T d1vyra_ 154 EIPGIVNDFRQAVANAREAGFDLVELHSAH 183 (363)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 799999999999999997513403451467
No 45
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}
Probab=26.07 E-value=14 Score=13.24 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 05889998876310
Q gi|255764472|r 206 SLSQVVDEARKLID 219 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~ 219 (469)
=+++|++|+..+-.
T Consensus 141 f~~~v~~E~~~lfp 154 (356)
T d1jaka1 141 FVDDVIGELAALTP 154 (356)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999987515
No 46
>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]}
Probab=25.77 E-value=13 Score=13.43 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 111001221376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 191 sfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
.||++|..-|...|..++.+++-++ +.|.+ ..++.--|... | +-..+.++++++.+
T Consensus 8 ~~~v~P~g~~~s~~~~V~~~i~~i~---~sGl~-y~~~pmgT~IE-G-----e~d~v~~~v~~~~e 63 (101)
T d1yqha1 8 SFSVVPQAKTKDVYSVVDKAIEVVQ---QSGVR-YEVGAMETTLE-G-----ELDVLLDVVKRAQQ 63 (101)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHHH---HSCSE-EEECSSCEEEE-E-----CHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HCCCC-EEECCCCCEEE-C-----CHHHHHHHHHHHHH
T ss_conf 9999846899967999999999999---74997-48669975666-7-----99999999999999
No 47
>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=25.22 E-value=8.1 Score=14.99 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=18.7
Q ss_pred EEEEECCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787412332446811----10012213764100588999887
Q gi|255764472|r 178 AFLTIQEGCDKFCTF----CVVPYTRGIEISRSLSQVVDEAR 215 (469)
Q Consensus 178 a~ikI~~GC~~~Csf----C~ip~~RG~~rSr~~~~Iv~ei~ 215 (469)
.+++-.+|| .-|-- |..+...|.++-.|..++++.++
T Consensus 28 t~V~~~~G~-G~~~t~~~~~~~~~~~g~l~g~~l~~l~~~~~ 68 (251)
T d2h1qa1 28 SVIRSGNGV-GLGPNRPFETRMPMLTQNLLGLPLRVAAGCVK 68 (251)
T ss_dssp EEEEETTEE-EEEECCSSSCCCHHHHHHHTTSBHHHHHGGGG
T ss_pred EEEEECCCE-EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 899908963-88813887655654345645899999997540
No 48
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.21 E-value=14 Score=13.13 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHCC--CCCCCHHHHHHHHHHHHCCCC--CCCEEE
Q ss_conf 789987303--334411467899987401344--320000
Q gi|255764472|r 300 DRILKSMNR--RHTAYEYRQIIDRIRSVRPDI--AISSDF 335 (469)
Q Consensus 300 ~~vLk~M~R--~~~~e~~~~~i~~~r~~~p~~--~i~tdi 335 (469)
...++.+++ ++++.+.+++.+.|.+. +. ..+||=
T Consensus 279 s~Lq~~a~~~~~~s~~~tl~iaQ~LYe~--g~ITYpRTDs 316 (556)
T d1gkub3 279 ETMLSDANRILKFSVKQTMQIAQELFEN--GLITYHRTDS 316 (556)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHT--TSBBCSSCCC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCC--CEEECCCCCC
T ss_conf 3899987453362388999998665026--5420368753
No 49
>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]}
Probab=23.70 E-value=15 Score=12.93 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH-CCCEE
Q ss_conf 89999999998-79868
Q gi|255764472|r 40 DSLRMEDMFFS-QGYER 55 (469)
Q Consensus 40 Dse~i~~~L~~-~G~~~ 55 (469)
|-+.|...+.. .||..
T Consensus 14 dpde~~~~~~~~~G~~~ 30 (221)
T d1r6wa1 14 DPDDLILKLADMPGEKV 30 (221)
T ss_dssp CHHHHHHHHHTCCSSEE
T ss_pred CHHHHHHHHHHCCCCCE
T ss_conf 99999999997589986
No 50
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}
Probab=23.17 E-value=14 Score=13.24 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 58899988763
Q gi|255764472|r 207 LSQVVDEARKL 217 (469)
Q Consensus 207 ~~~Iv~ei~~l 217 (469)
+++|++|+..+
T Consensus 145 ~~~l~~e~~~~ 155 (344)
T d1yhta1 145 MQSLMSEVIDI 155 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 51
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.84 E-value=9.4 Score=14.49 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 4468111001221376410
Q gi|255764472|r 187 DKFCTFCVVPYTRGIEISR 205 (469)
Q Consensus 187 ~~~CsfC~ip~~RG~~rSr 205 (469)
|+.|.+|.-.++|...|-|
T Consensus 3 Pf~C~~CgrkFArsderkR 21 (28)
T d1a1ia3 3 PFACDICGRKFARSDERKR 21 (28)
T ss_dssp CEECTTTCCEESSHHHHHH
T ss_pred CCCCCHHHHHHHCCHHHHH
T ss_conf 7120001025513126666
No 52
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Probab=22.79 E-value=16 Score=12.81 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 000135220124789886
Q gi|255764472|r 334 DFIVGFPGETDDDFRATM 351 (469)
Q Consensus 334 diIvGfPgETeedf~~Tl 351 (469)
.+|.|===+|+||..+.+
T Consensus 139 piIAGGLI~~~edv~~al 156 (172)
T d1vkfa_ 139 TVIAAGLVETEEEAREIL 156 (172)
T ss_dssp EEEEESCCCSHHHHHHHT
T ss_pred CEEEECCCCCHHHHHHHH
T ss_conf 799517708899999998
No 53
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}
Probab=22.76 E-value=16 Score=12.81 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=25.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECC
Q ss_conf 6079999579856887899999999987986877
Q gi|255764472|r 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 24 ~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469)
..|+.+-|++|+. ..-+.......+.||.-++
T Consensus 5 ~~r~~~n~~~~p~--l~lee~l~~a~~~G~dgiE 36 (271)
T d2q02a1 5 KTRFCINRKIAPG--LSIEAFFRLVKRLEFNKVE 36 (271)
T ss_dssp GGGEEEEGGGCTT--SCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHCCC--CCHHHHHHHHHHHCCCEEE
T ss_conf 5367660312179--9999999999985999899
No 54
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=22.53 E-value=16 Score=12.78 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHHHHHH-HCCC--CEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 8999887631-0133--105873145411341134443100021678862044430013544
Q gi|255764472|r 209 QVVDEARKLI-DNGV--CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT 267 (469)
Q Consensus 209 ~Iv~ei~~l~-~~G~--kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s 267 (469)
-++.++..+. +.|+ ....+-..+-..|---++..+.....+++++|.++++..++|+.+
T Consensus 23 Gvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l~ 84 (84)
T d1sc6a3 23 GVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 84 (84)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEECC
T ss_pred CHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 98999999999739998996244578774899999788877799999997799879999739
No 55
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}
Probab=22.50 E-value=16 Score=12.77 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 1146789998740134432000001352201247898
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~ 349 (469)
++..+.++++|+.. + .-+.|||==-|.|+...
T Consensus 188 ~~~~~~i~~ik~~t-~----~Pv~vGFGIs~~e~v~~ 219 (271)
T d1ujpa_ 188 EEVKDLVRRIKART-A----LPVAVGFGVSGKATAAQ 219 (271)
T ss_dssp -CCHHHHHHHHTTC-C----SCEEEESCCCSHHHHHH
T ss_pred HHHHHHHHHHHCCC-C----CCEEEECCCCCHHHHHH
T ss_conf 77999987651156-6----87587478798899987
No 56
>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.38 E-value=16 Score=12.75 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=44.2
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf 87412332446811100122137641005889998876310133105873145411341134443100021678862044
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~ 258 (469)
|+-|.+=||-. .-+..+--.+-+..+.++++++..++.|+.=|-+ |++.- +. .+...+..+++.+..+.
T Consensus 15 f~iIGEriN~t----g~k~~~~~~~~~d~d~~~~~A~~qv~~GA~iLDI---n~~~~-~~---~e~~~m~~li~~l~~~~ 83 (260)
T d3bofa1 15 FVVIGERINPA----GRKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDV---NFGIE-SQ---IDVRYVEKIVQTLPYVS 83 (260)
T ss_dssp CEEEEEEECCT----TCHHHHHHHHTTCSHHHHHHHHHHHHTTCSEEEE---ECSSG-GG---SCHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCHH----HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE---ECCCC-HH---HHHHHHHHHHHHHHHCC
T ss_conf 67988617664----2799999998689899999999999859988986---24875-05---55899999999988417
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 43001354421000
Q gi|255764472|r 259 GLVRLRYTTSHPRD 272 (469)
Q Consensus 259 ~~~riR~~s~~P~~ 272 (469)
.. .+-+-|.+|..
T Consensus 84 d~-PlsIDT~~~~v 96 (260)
T d3bofa1 84 NV-PLSLDIQNVDL 96 (260)
T ss_dssp CS-CEEEECCCHHH
T ss_pred CC-CCCCCCCCHHH
T ss_conf 99-84126898799
No 57
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=22.19 E-value=12 Score=13.63 Aligned_cols=67 Identities=6% Similarity=0.269 Sum_probs=32.3
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHH
Q ss_conf 3320336779887631457760799995798568878999999999879868776010889999278325079
Q gi|255764472|r 4 FIKLIGVAHMVSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 (469)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~a 76 (469)
+|-|+|.-+|-+.|.. .+ .+++++. .=+..|..-.+.+...+...-....+..+++|++++ +|.+.+
T Consensus 1 ~IgfIG~G~mg~~l~~-~L-~~~~~~~-~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil---~v~d~~ 67 (153)
T d2i76a2 1 VLNFVGTGTLTRFFLE-CL-KDRYEIG-YILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV---IVPDRY 67 (153)
T ss_dssp CCEEESCCHHHHHHHH-TT-C----CC-CEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEE---CSCTTT
T ss_pred CEEEEECCHHHHHHHH-HH-HHCCCEE-EEEECCHHHHCCHHHCCCCCCCCHHHHHCCCCEEEE---ECCCHH
T ss_conf 9999907599999999-99-8389989-999688465000454065221114655123758998---043165
No 58
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.37 E-value=6.3 Score=15.79 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=42.0
Q ss_pred EEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC---CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 133211145789987303334411467899987401---344320000013522012478988633221011
Q gi|255764472|r 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 (469)
Q Consensus 291 lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~---p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~ 359 (469)
+.++=+++...+|..|-|.|..+- +-+...+ -+..++ .+++.+||..+++.++.++++++...
T Consensus 22 L~F~G~~a~~Pvis~l~r~~~v~v-----nIL~g~I~~i~~~~~G-~Liv~l~G~~~~~i~~ai~~L~~~~v 87 (95)
T d3ceda1 22 LVFAGSTTTEPIVSSLSTAYDIKI-----NILEANIKNTKNGTVG-FLVLHIPYISSVDFGKFEKELIERQV 87 (95)
T ss_dssp EEEEEESCHHHHHHHHHHHHTCCC-----EEEEEEEEEETTEEEE-EEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCE-----EEEEEEEEEECCEEEE-EEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 998188658519999999859963-----8999874881890389-99999866998999999999998698
No 59
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]}
Probab=20.35 E-value=18 Score=12.46 Aligned_cols=109 Identities=8% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEECCCCCC-CCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 876310133105873145411341134443-1000216788620444300135442--1000100036652022111220
Q gi|255764472|r 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIKGLVRLRYTTS--HPRDMSDCLIKAHGDLDVLMPY 290 (469)
Q Consensus 214 i~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~-~~~l~~Ll~~l~~i~~~~riR~~s~--~P~~~~~~li~~~~~~~~i~~~ 290 (469)
...+...|..-..++|.|+-+-.+..+..+ ...+....+....+..+..-|++.+ .|..| ...+.+...+-.+
T Consensus 125 ~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll~faRAa~av~~Lrg~~ig~iG~~~mGm----~~~~~d~~~l~~~ 200 (355)
T d1fuia2 125 LAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSLGGVSMGI----AGSIVDHNFFESW 200 (355)
T ss_dssp HHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCSTTC----GGGSCCHHHHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----CCCCCCHHHHHHH
T ss_conf 999986598734760776668754226699999999999999999986589278877856774----4125799999998
Q ss_pred EEEEEECCC-HHHHHHHCCC-CCCCHHHHHHHHHHHHC
Q ss_conf 133211145-7899873033-34411467899987401
Q gi|255764472|r 291 LHLPVQSGS-DRILKSMNRR-HTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 291 lhlpiQSgs-~~vLk~M~R~-~~~e~~~~~i~~~r~~~ 326 (469)
|-+-+++-+ ..++++|.+. |+.+++.++.+.+++.+
T Consensus 201 fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~ 238 (355)
T d1fuia2 201 LGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNF 238 (355)
T ss_dssp HCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 39952787599999999746899999999999999733
Done!