RPSBLAST alignment for GI: 255764472 and conserved domain: TIGR00089

>gnl|CDD|161701 TIGR00089, TIGR00089, RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. Length = 429
 Score =  481 bits (1240), Expect = e-136
 Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 17/443 (3%)

Query: 26  RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
           + ++++YGCQMN  DS  M  +    GYE  +  ++AD+I++NTC +REKA +KV S LG
Sbjct: 1   KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLG 60

Query: 86  RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
            +  LK    K      +VVAGC+AQ EGEE+L+R P V++V+GPQ   R+PE +E A  
Sbjct: 61  ELAKLKKKNAK------IVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAEQ 114

Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
            K+VV        +        G         AFL IQEGCDKFCT+C+VPY RG E SR
Sbjct: 115 EKQVVFNISKDVYEELPRPRSFGKT------RAFLKIQEGCDKFCTYCIVPYARGRERSR 168

Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
               +++E ++L+  GV EI LLGQNV A+ GK L GE    +DLL  LS+I G+ R+R+
Sbjct: 169 PPEDILEEVKELVSKGVKEIVLLGQNVGAY-GKDLKGET-NLADLLRELSKIDGIERIRF 226

Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
            +SHP D++D LI+   +   +  +LHLPVQSGSDRILK MNR++T  EY  I+++IR+ 
Sbjct: 227 GSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK 286

Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
            PD AI++D IVGFPGET++DF  T+DLV+++ + +  SF YSPR GTP ++M +QV E 
Sbjct: 287 IPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEE 346

Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL--NS 442
           VK ERL  L    +E  +  N   VG+ +EVL+E + GK++G+L GR+   + VV     
Sbjct: 347 VKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGRTENYKPVVFEGGV 406

Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
             + IG  +KV+IT+    +L G
Sbjct: 407 GKNLIGKFVKVKITEAAEYSLIG 429