RPSBLAST alignment for GI: 255764472 and conserved domain: TIGR00089
>gnl|CDD|161701 TIGR00089, TIGR00089, RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. Length = 429
Score = 481 bits (1240), Expect = e-136
Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 17/443 (3%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
+ ++++YGCQMN DS M + GYE + ++AD+I++NTC +REKA +KV S LG
Sbjct: 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLG 60
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
+ LK K +VVAGC+AQ EGEE+L+R P V++V+GPQ R+PE +E A
Sbjct: 61 ELAKLKKKNAK------IVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAEQ 114
Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
K+VV + G AFL IQEGCDKFCT+C+VPY RG E SR
Sbjct: 115 EKQVVFNISKDVYEELPRPRSFGKT------RAFLKIQEGCDKFCTYCIVPYARGRERSR 168
Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
+++E ++L+ GV EI LLGQNV A+ GK L GE +DLL LS+I G+ R+R+
Sbjct: 169 PPEDILEEVKELVSKGVKEIVLLGQNVGAY-GKDLKGET-NLADLLRELSKIDGIERIRF 226
Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
+SHP D++D LI+ + + +LHLPVQSGSDRILK MNR++T EY I+++IR+
Sbjct: 227 GSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK 286
Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
PD AI++D IVGFPGET++DF T+DLV+++ + + SF YSPR GTP ++M +QV E
Sbjct: 287 IPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEE 346
Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL--NS 442
VK ERL L +E + N VG+ +EVL+E + GK++G+L GR+ + VV
Sbjct: 347 VKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGRTENYKPVVFEGGV 406
Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
+ IG +KV+IT+ +L G
Sbjct: 407 GKNLIGKFVKVKITEAAEYSLIG 429