RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase
(miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
(469 letters)
>gnl|CDD|184622 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 444
Score = 746 bits (1929), Expect = 0.0
Identities = 238/446 (53%), Positives = 320/446 (71%), Gaps = 10/446 (2%)
Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
++ ++K+YGCQMN YDS +M D+ ++GYE + ++ADLI+LNTC IREKA EKV+S
Sbjct: 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSE 62
Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
LGR R LK DL++ V GCVAQ EGEEIL+R+P V++V GPQT +RLPE++ RA
Sbjct: 63 LGRWRKLKEKN----PDLIIGVGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARA 118
Query: 144 -RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
R GK VVD + +KF+ L R G +AF++I EGCDK+CTFCVVPYTRG E
Sbjct: 119 RRGGKPVVDISFPEIEKFDHLP-----EPRAEGPSAFVSIMEGCDKYCTFCVVPYTRGEE 173
Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
+SR + V+ E +L + GV EITLLGQNVNA+RG+G DGE F++LL ++ I G+ R
Sbjct: 174 VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIER 233
Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
+RYTTSHPRD +D LI+A+ DL L+P+LHLPVQSGSDRILK+MNR HTA EY+ II ++
Sbjct: 234 IRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKL 293
Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
R+ RPDIAISSDFIVGFPGETD+DF ATM L++ +G+ Q+FSF YSPR GTP +++ + V
Sbjct: 294 RAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDV 353
Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNS 442
E VK ERL LQ + +QQ++F+ + VG + VL+E ++ G+L+GR+ + V
Sbjct: 354 PEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDGQLIGRTENNRVVNFEG 413
Query: 443 KNHNIGDIIKVRITDVKISTLYGELV 468
IG + V+IT+ ++L GELV
Sbjct: 414 DPDLIGQFVDVKITEAYPNSLRGELV 439
>gnl|CDD|161701 TIGR00089, TIGR00089, RNA modification enzyme, MiaB family. This
subfamily is aparrently a part of a larger superfamily
of enzymes utilizing both a 4Fe4S cluster and S-adenosyl
methionine (SAM) to initiate radical reactions. MiaB
acts on a particular isoprenylated Adenine base of
certain tRNAs causing thiolation at an aromatic carbon,
and probably also transferring a methyl grouyp from SAM
to the thiol. The particular substrate of the three
other clades is unknown but may be very closely related.
Length = 429
Score = 481 bits (1240), Expect = e-136
Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 17/443 (3%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
+ ++++YGCQMN DS M + GYE + ++AD+I++NTC +REKA +KV S LG
Sbjct: 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLG 60
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
+ LK K +VVAGC+AQ EGEE+L+R P V++V+GPQ R+PE +E A
Sbjct: 61 ELAKLKKKNAK------IVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAEQ 114
Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISR 205
K+VV + G AFL IQEGCDKFCT+C+VPY RG E SR
Sbjct: 115 EKQVVFNISKDVYEELPRPRSFGKT------RAFLKIQEGCDKFCTYCIVPYARGRERSR 168
Query: 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY 265
+++E ++L+ GV EI LLGQNV A+ GK L GE +DLL LS+I G+ R+R+
Sbjct: 169 PPEDILEEVKELVSKGVKEIVLLGQNVGAY-GKDLKGET-NLADLLRELSKIDGIERIRF 226
Query: 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325
+SHP D++D LI+ + + +LHLPVQSGSDRILK MNR++T EY I+++IR+
Sbjct: 227 GSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK 286
Query: 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385
PD AI++D IVGFPGET++DF T+DLV+++ + + SF YSPR GTP ++M +QV E
Sbjct: 287 IPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEE 346
Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQSVVL--NS 442
VK ERL L +E + N VG+ +EVL+E + GK++G+L GR+ + VV
Sbjct: 347 VKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGRTENYKPVVFEGGV 406
Query: 443 KNHNIGDIIKVRITDVKISTLYG 465
+ IG +KV+IT+ +L G
Sbjct: 407 GKNLIGKFVKVKITEAAEYSLIG 429
>gnl|CDD|184625 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 439
Score = 436 bits (1124), Expect = e-123
Identities = 190/450 (42%), Positives = 289/450 (64%), Gaps = 17/450 (3%)
Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
+++F+++YGCQMN DS ++ M S GYER + ++AD+I+ NTC +RE A KV+
Sbjct: 1 NKKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGN 60
Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLE 141
LG ++ LK ++ +L++ V GC+ Q +G E+I ++ P V+++ G ++ PE L
Sbjct: 61 LGELKKLK----EKNPNLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLN 116
Query: 142 RARF-GKRVVDTDYSVEDKFERLSIVDG-GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
R + GK V++ + +K + IV+G +RK V AF+TI GC+ FCT+C+VPY R
Sbjct: 117 RVKEEGKSVIE----IWEKED--GIVEGLPIDRKSKVKAFVTIMYGCNNFCTYCIVPYVR 170
Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259
G E SR ++ E ++L+ G E+TLLGQNVN++ GK L EK F+DLL ++EI G
Sbjct: 171 GRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSY-GKDL-EEKIDFADLLRRVNEIDG 228
Query: 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQII 319
L R+R+ TSHP+D+SD LI+A D D + ++HLPVQSGS+RILK MNR +T Y +++
Sbjct: 229 LERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELV 288
Query: 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379
++I+S PD+AI++D IVGFPGET++DF T+DLV ++ Y AF+F YS R GTP + M
Sbjct: 289 EKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKME 348
Query: 380 EQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSPWLQSV 438
+QV E+VK ER L + + + N G+I+EVL+E K ++ KL GR+ + V
Sbjct: 349 DQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDENKLTGRTRTNKLV 408
Query: 439 VLNSKNHNIGDIIKVRITDVKISTLYGELV 468
IG ++ V+IT +L GE++
Sbjct: 409 NFIGDKELIGKLVNVKITKANSFSLTGEVI 438
>gnl|CDD|162429 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37
thiotransferase enzyme MiaB. Hits to this model span
all major groups of bacteria and eukaryotes, but not
archaea, which are known to lack this particular tRNA
modification. The enzyme from Thermotoga maritima has
been cloned, expressed, spectroscopically characterized
and shown to complement the E. coli MiaB enzyme.
Length = 438
Score = 436 bits (1122), Expect = e-123
Identities = 184/447 (41%), Positives = 267/447 (59%), Gaps = 13/447 (2%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
+ F+++YGCQMNV DS M + + +GY +AD++++NTC +REKA KV+ L
Sbjct: 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGEL 60
Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERAR 144
G + LK K+ DL++ V GC+A G EI +R+P V+ V G + +RLP+ ++
Sbjct: 61 GGFKKLK----KKNPDLIIGVCGCMASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPL 116
Query: 145 FGKR-VVDTDYSVEDKFERLSIVDGGYNRKRGV-TAFLTIQEGCDKFCTFCVVPYTRGIE 202
K VVD D + + R G+ +F+ I GC+KFCT+C+VPYTRG E
Sbjct: 117 TQKFMVVDIDSDESEVAGYFADF-----RNEGIYKSFINIMIGCNKFCTYCIVPYTRGDE 171
Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
ISR ++ E +KL + GV EITLLGQNVNA+RGK +G+ FSDLL LS I G+ R
Sbjct: 172 ISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIER 231
Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
+R+T+SHP D D LI+ + L +HLPVQSGS ILK M R +T Y ++ ++
Sbjct: 232 IRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKL 291
Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
R+ P+++IS+D IVGFPGET++DF T+DL+ ++ + AFSF YSPR GTP ++M +Q+
Sbjct: 292 RAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQI 351
Query: 383 DENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLN 441
E +K RL LQ + E G+ +VL+E + +L GR+ V
Sbjct: 352 PEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNPEELAGRTENNFLVNFE 411
Query: 442 SKNHNIGDIIKVRITDVKISTLYGELV 468
IG + V+IT+VK +L GE+V
Sbjct: 412 GSEDLIGKFVDVKITNVKRMSLRGEIV 438
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 446
Score = 402 bits (1036), Expect = e-113
Identities = 183/453 (40%), Positives = 266/453 (58%), Gaps = 22/453 (4%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
F + ++GCQMNV DS + ++G+ ++A + ++NTC +R+K +KVYS LG
Sbjct: 5 TFHIITFGCQMNVNDSDWLARALVARGFTEA-PEEEARVFIVNTCSVRDKPEQKVYSLLG 63
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--A 143
RIR K+ D+ V V GCVAQ G R P V +V G P+ LER
Sbjct: 64 RIR----HATKKNPDVFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAE 119
Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
R+ D+S E ER ++ G +AF+ I +GCD FC +C+VPYTRG +
Sbjct: 120 EPDLRLSLLDFS-EHYPEREALWGNG---TVPASAFVNIMQGCDNFCAYCIVPYTRGRQK 175
Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGLV 261
SRS + V+DE R L+D G EITLLGQNVN++ G D G+ +F+ LL+ ++ + GL
Sbjct: 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSY---GQDKHGDGTSFAQLLHKVAALPGLE 232
Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
RLR+TT HP+D++ +I+A G+L L P LHLP+QSGSDRILK+M R++ Y I+
Sbjct: 233 RLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTD 292
Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
+R+ RPDIA+++D IVGFPGET++DF T++ + +G+A +FSF YS R GT + +
Sbjct: 293 LRAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGK 352
Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLV----GRSPW--L 435
V E VK+ RL LQ+ E + A VG+ VL+E ++ G+ GR P +
Sbjct: 353 VPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPGEGGDSWQGRDPGGRV 412
Query: 436 QSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
+V L + G ++ VRIT+ K +L GE
Sbjct: 413 VNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445
>gnl|CDD|184628 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 437
Score = 391 bits (1007), Expect = e-109
Identities = 186/451 (41%), Positives = 283/451 (62%), Gaps = 26/451 (5%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
++++K++GCQMN DS +++ + + GYE + ++ADLI++NTC IREK +KV S LG
Sbjct: 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLG 61
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
+ +K + L+ V GC+AQ G EI++++P +++V G + LPELLE+A+
Sbjct: 62 EYKKIKEKN----PNALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKA 117
Query: 146 GKRVV----DTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
G + + + D E+K + V R A++T+ GCDK CT+CVVP TRG
Sbjct: 118 GNKAIEILEEIDED-ENKLDEYPTV-----RDNKYCAYVTVMRGCDKKCTYCVVPKTRGK 171
Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
E SR L ++DE + L+D+GV EI L+GQNV A+ G D FS+LLY+++EI G+
Sbjct: 172 ERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAY---GKDIGDVPFSELLYAVAEIDGVE 228
Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
R+R+TT HPRD+ + +IKA D+ + +LHLP Q+GSDRILK M+R +T EY + I+
Sbjct: 229 RIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIEL 288
Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
++ PDI S+D IVGFP ET++DF T+D++ K+ + Q FSFKYSPR GTP + M Q
Sbjct: 289 LKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQ 348
Query: 382 VDENVKAER---LLCLQKK-LREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
+ VK +R LL LQK+ ++ +S+ G + EVL+E+ KE KL+GR+ +
Sbjct: 349 EPDEVKTKRMNRLLELQKEITFKKALSYE----GTVQEVLVEEE-KEGNKLIGRTRTNKW 403
Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
V + +G I+KV+I +L GE++
Sbjct: 404 VSIEGSQEMLGKIVKVKIIKSNPFSLEGEIL 434
>gnl|CDD|184626 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 467
Score = 387 bits (996), Expect = e-108
Identities = 189/458 (41%), Positives = 275/458 (60%), Gaps = 30/458 (6%)
Query: 26 RFFVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79
+ F++SYGCQMN DS L+M GY ++++ADL+++NTC IR+ A +K
Sbjct: 25 KLFIESYGCQMNFADSEIVASILQMA------GYNTTENLEEADLVLVNTCSIRDNAEQK 78
Query: 80 VYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
V L + LK K+ L+V V GC+A+ +++L IV++VVGP Y LP L
Sbjct: 79 VRKRLEKFNALK----KKNPKLIVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNL 134
Query: 140 LERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTR 199
+ G++ ++ S E+ + +S V G N GV+AF++I GCD CTFCVVP+TR
Sbjct: 135 IAEVEEGRKAINVILSKEETYADISPVRLGGN---GVSAFVSIMRGCDNMCTFCVVPFTR 191
Query: 200 GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WRGKGLDGEKCT-FSDLLYSLSE 256
G E SR +++E R L G E+TLLGQNV++ W G GL ++ F+ LL ++E
Sbjct: 192 GRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAE 251
Query: 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR 316
+R+R++TSHP+DM+D +++ D + ++HLPVQSGSDRILK MNR++T Y
Sbjct: 252 AVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYL 311
Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376
ID IR + PD IS+D I GFP ET++D + T+ L++++GY AF FKYS R GT +
Sbjct: 312 DRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAA 371
Query: 377 NMLE-QVDENVKAERL---LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKE-KGKLVGR 431
LE V E VK RL + LQ++L ++ N +G+ EVLIE K + +L GR
Sbjct: 372 RKLEDDVPEEVKKRRLNEIIALQQELSLER---NQRDIGKTFEVLIEGVSKRSREQLFGR 428
Query: 432 SPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
+ + VV +N+ IGD + VRITD +TL GE V
Sbjct: 429 NSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466
>gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 509
Score = 372 bits (956), Expect = e-103
Identities = 181/448 (40%), Positives = 270/448 (60%), Gaps = 15/448 (3%)
Query: 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFL 84
++F++++YGCQMN +D+ M +F + GYE + +DAD+I+LNTC IRE A KV+ +
Sbjct: 67 RKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEI 126
Query: 85 GRIRNLKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRSPIVNVVVGPQTYYRLPELLER 142
G +++LK +E DLL+ V GC++Q E +IL++ V+++ G +RLPE+L+
Sbjct: 127 GHLKHLK----RENPDLLIGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKE 182
Query: 143 ARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
A F K +V +S E D E L V R+ + A++ I GCDKFCT+C+VPYTRG
Sbjct: 183 AYFSKEMVVEVWSKEGDVIENLPKV-----REGNIKAWVNIMYGCDKFCTYCIVPYTRGK 237
Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261
E SR ++ E R L G EITLLGQNVNA+ GK + + DL+ + +I +
Sbjct: 238 ERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAY-GKDFEDIEYGLGDLMDEIRKI-DIP 295
Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321
R+R+TTSHPRD D LI+ L+ ++HLPVQSGS +LK M R++T Y +++ +
Sbjct: 296 RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRK 355
Query: 322 IRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ 381
I+ P++A+++D IVGFP ETD+ F T+ L ++G+ A++F YSPR GTP + M +
Sbjct: 356 IKEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDN 415
Query: 382 VDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGK-LVGRSPWLQSVVL 440
V VK ERL L + E GQ +EVL+E K+ + L G + + V
Sbjct: 416 VPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGESKKNPEVLAGYTRKNKLVNF 475
Query: 441 NSKNHNIGDIIKVRITDVKISTLYGELV 468
IG ++KV+IT+ K +L GELV
Sbjct: 476 KGPKSLIGQLVKVKITEAKTWSLNGELV 503
>gnl|CDD|184629 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 448
Score = 364 bits (936), Expect = e-101
Identities = 181/455 (39%), Positives = 277/455 (60%), Gaps = 23/455 (5%)
Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
+ +++ ++GCQMN DS RM + GY+ ADL++ NTC IR+ A +KVYS+
Sbjct: 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSY 65
Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
LGR + R + DL +VVAGCVAQ EGE +LRR P +++V+GPQ RL +LLE+
Sbjct: 66 LGR----QAKRKHKNPDLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQV 121
Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKR--GVTAFLTIQEGCDKFCTFCVVPYTRGI 201
G +VV T E + I++ +R +TA++ + GC++ CT+CVVP RG
Sbjct: 122 DAGNQVVAT--------EEIHILEDITKPRRDSSITAWVNVIYGCNERCTYCVVPSVRGK 173
Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG------EKCTFSDLLYSLS 255
E SR+ + E +L G EITLLGQN++A+ G+ L G + T +DLLY +
Sbjct: 174 EQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAY-GRDLPGTTPEGRHQHTLTDLLYYIH 232
Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
+++G+ R+R+ TSHPR ++ LIKA +L + + H+P QSG + ILK+M R +T +Y
Sbjct: 233 DVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKY 292
Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
R+IID+IR PD +IS+D IVGFPGET+ F T+ LV++IG+ Q + YSPR GTP
Sbjct: 293 RRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPA 352
Query: 376 SNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPW 434
+ Q+ E VK++RL L + ++ + +G+I EVL+E + K+ +++GR+
Sbjct: 353 ALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGINPKDPSQVMGRTRT 412
Query: 435 LQSVVLNSK-NHNIGDIIKVRITDVKISTLYGELV 468
+ N GD++KV+IT+V+ +L GE +
Sbjct: 413 NRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPL 447
>gnl|CDD|184623 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 357 bits (919), Expect = 3e-99
Identities = 166/446 (37%), Positives = 265/446 (59%), Gaps = 26/446 (5%)
Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
+ + V++YGCQMNV+DS R+ + + GY R DAD++V NTC +RE A ++Y
Sbjct: 13 ARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGN 72
Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
LG + +K + + + V GC+AQ + + IL+R+P V+VV G LP LLERA
Sbjct: 73 LGHLAPVKRAN----PGMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERA 128
Query: 144 RFGKRV-VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIE 202
R K V+ S+E L R+ A+++I GC+ CTFC+VP RG E
Sbjct: 129 RHNKEAQVEIAESLEQFPSTLPA-----RRESAYAAWVSISVGCNNTCTFCIVPSLRGKE 183
Query: 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262
R ++ E + L+D GV E+TLLGQNVNA+ G G++ FS LL + EI GL R
Sbjct: 184 KDRRPGDILAEVQALVDEGVLEVTLLGQNVNAY-GVSF-GDRGAFSKLLRACGEIDGLER 241
Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
+R+T+ HP + +D +I+A + + P LH+P+QSGSDR+L++M R + + + I++++
Sbjct: 242 VRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKV 301
Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQV 382
R+ PD AI++D IVGFPGET++DF+AT+D+V + ++ AF+F+YS R GTP + M Q+
Sbjct: 302 RAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQL 361
Query: 383 DENV---KAERLLCLQKKLREQQVSFNDACVGQIIEVLI-EKHGK---EKGKLVGRSPWL 435
+ V + ERL+ LQ+++ ++ N VG+ +E+L+ G+ ++ GR+
Sbjct: 362 PKAVVQERYERLVALQERISLEE---NRKLVGRTVELLVATGEGRKDAATHRMSGRARDG 418
Query: 436 Q----SVVLNSKNHNIGDIIKVRITD 457
+ +V + GD++ V +T
Sbjct: 419 RLVHFTVPEGAPEVRPGDVVTVTVTY 444
>gnl|CDD|172816 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 445
Score = 355 bits (913), Expect = 1e-98
Identities = 171/449 (38%), Positives = 257/449 (57%), Gaps = 22/449 (4%)
Query: 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSF 83
++F++ ++GCQMN DS + + +GY S +DAD+++LNTC +RE A E++ +
Sbjct: 6 GRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHY 65
Query: 84 LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERA 143
L ++ K R K LLV V GCV Q E EE+ P+++ + GP TY LP L+ A
Sbjct: 66 LQHLKGAKRRR-KG---LLVGVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADA 121
Query: 144 RFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEI 203
R G R D++ + + + V R ++AF+ + GC+ C FCVVP+TRG E
Sbjct: 122 REGARPAALDFNQSETYAGIEPV-----RSGSISAFVPVMRGCNNMCAFCVVPFTRGRER 176
Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK-CTFSDLLYSLSEIKGLVR 262
S + V+DE R L + G EITLLGQNVN++ D E F+ LL ++S +R
Sbjct: 177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYS----DPEAGADFAGLLDAVSRAAPEMR 232
Query: 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322
+R+TTSHP+D+S+ L++ + ++HLPVQSGS R+L+ MNR HT EY + I I
Sbjct: 233 IRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALI 292
Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQ 381
RS P + +S+D I GF GET++D RAT+ L++++ + AF F YS R GT + + +
Sbjct: 293 RSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDD 352
Query: 382 VDENVKAERLLCLQKKLREQQ---VSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQS 437
V E VK R LQ+ + Q VG ++EVL E + +L+GR+ +
Sbjct: 353 VPEEVKKRR---LQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSEQLMGRTDGNRV 409
Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGE 466
VV + GD+++VRIT +TL GE
Sbjct: 410 VVFDRGGFQPGDLVRVRITGSTSATLSGE 438
>gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 434
Score = 342 bits (879), Expect = 1e-94
Identities = 170/449 (37%), Positives = 264/449 (58%), Gaps = 26/449 (5%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
+F++K++GCQMN DS M + +G+E ++ ++AD++++NTC +R K+ EK YS LG
Sbjct: 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELG 61
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
++ LK + ++ VAGCVA+ E E++L+R + V+G + ++ E ++RA
Sbjct: 62 QLLKLKRKKNL-----IIGVAGCVAEKEREKLLKRG--ADFVIGTRAVPKVTEAVKRALN 114
Query: 146 GKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT--AFLTIQEGCDKFCTFCVVPYTRGIEI 203
G++V EDK L + R R A++TI GC++FCT+C+VPYTRG E
Sbjct: 115 GEKVAL----FEDK---LDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVPYTRGREK 167
Query: 204 SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRL 263
SR + +++E KL G E+T LGQNV+A+ GK L + + + LL S+I+G+ R+
Sbjct: 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAY-GKDL-KDGSSLAKLLEEASKIEGIERI 225
Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323
+ TS+P D SD LI+ + + +HLPVQSGS+RILK MNRR+T EY ++I++IR
Sbjct: 226 WFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIR 285
Query: 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-QV 382
S PD +ISSD IVGFP ET++DF T+DLV+K + + YSPR GT + V
Sbjct: 286 SKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDV 345
Query: 383 DENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVV 439
K R LL LQK++ + N+ +G+ +E+++E K G GR + +
Sbjct: 346 PYEEKVRRMQYLLNLQKRINRK---LNERYLGKTVEIIVEAKAKN-GLFYGRDIRNKIIA 401
Query: 440 LNSKNHNIGDIIKVRITDVKISTLYGELV 468
+ IG V+I + LYG++V
Sbjct: 402 FEGEEELIGRFADVKIEKITAGPLYGKVV 430
>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 459
Score = 326 bits (838), Expect = 6e-90
Identities = 163/458 (35%), Positives = 243/458 (53%), Gaps = 29/458 (6%)
Query: 17 IVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76
D +R++V + GCQMNV DS R+E GY +DAD IVLN+C +R A
Sbjct: 13 DRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASA 72
Query: 77 AEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEIL-RRSPIVNVVVGPQTYYR 135
E++ LG ++ LK R D +V+ GC+ + I R P+V+ V P
Sbjct: 73 EERILGKLGELQRLKRQR----PDTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDE 128
Query: 136 LPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVV 195
+ L + + ++ ++ VT + I GC+ C++CV+
Sbjct: 129 VVALAP--------NPIY-----QLDEPALPVADWSHP-PVTVHVPIIYGCNMSCSYCVI 174
Query: 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
P RG E SR L+++V+E R++ G EITLLGQ V+++ G L G +DLL ++
Sbjct: 175 PLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSY-GHDLPGRP-DLADLLEAVH 232
Query: 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY 315
EI GL RLR+ TSHP M+D LI A L P+++LPVQ+G D +LK M R +T Y
Sbjct: 233 EIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARY 292
Query: 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375
R++I RIR PD+++++D IVG PGET++ F+ T DL+++I + + YSPR GT
Sbjct: 293 RELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLA 352
Query: 376 SNM----LEQVDENVKAERLLCLQKKLREQ-QVSFNDACVGQIIEVLIEKHGKEKGKLVG 430
+ M V K R L+ +L+EQ N +GQ +EVL+E G+ KGK G
Sbjct: 353 AEMEDDPALAVPPEEKQRRRRALE-QLQEQIATERNARFLGQTVEVLVE--GEAKGKWRG 409
Query: 431 RSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
R+ + V ++ G ++ VRIT +L GELV
Sbjct: 410 RTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELV 447
>gnl|CDD|184634 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 420
Score = 326 bits (838), Expect = 7e-90
Identities = 167/436 (38%), Positives = 250/436 (57%), Gaps = 20/436 (4%)
Query: 36 MNVYDSLRM-EDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSR 94
MNV DS M ++ + Y+ + +ADLI++NTC +REK K++S +G+ +K
Sbjct: 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEG 60
Query: 95 IKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDY 154
K G V GC A GEEI++R+P V+ V+G + ++ +++ + + VD DY
Sbjct: 61 AKIG------VCGCTASHLGEEIIKRAPYVDFVLGARNVSKISQVIHTPKAVE--VDIDY 112
Query: 155 SVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214
E + RK + + I GCDK CT+C+VP+TRG EIS + ++ EA
Sbjct: 113 D-ESTYAF------ADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEA 165
Query: 215 RKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272
K ++NG EI LLGQNVN + GK EK FSDLL LSEI+GL R+R+T+ HP
Sbjct: 166 EKAVNNGAKEIFLLGQNVNNY-GKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLH 224
Query: 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332
M D ++ + +H+P+QSGS ILK+M R +T + +++R++ P+++IS
Sbjct: 225 MDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSIS 284
Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392
+D IVGFPGE+D DF TMD+++K+ + Q FSFKYSPR T + QVDE V +ERL
Sbjct: 285 TDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLE 344
Query: 393 CLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452
LQ + +E VG+ VL E+ + G + GRS + V + +G+ +K
Sbjct: 345 RLQNRHKEILDEIAKKEVGKTHVVLFEEL-RANGGVAGRSDNNKLVQVKGSEELLGEFVK 403
Query: 453 VRITDVKISTLYGELV 468
V+IT+ LYGE+V
Sbjct: 404 VKITNASRGVLYGEIV 419
>gnl|CDD|184631 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 455
Score = 324 bits (833), Expect = 2e-89
Identities = 150/457 (32%), Positives = 250/457 (54%), Gaps = 21/457 (4%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
+F ++YGCQMNV +S ME + ++G+ + + D++++NTC +R A +V+ LG
Sbjct: 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLG 61
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARF 145
+LK R +++ GC+A+ +EI + P ++ VVG + RL + +
Sbjct: 62 LFSSLKKKR-----AFFIILMGCMAERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIE- 115
Query: 146 GKRVVDTDYSVEDKFERLS--IVDGGY-----NRKRGVTAFLTIQEGCDKFCTFCVVPYT 198
++ DY E ER V G + +F+ I GC+ FC++C+VPY
Sbjct: 116 -AKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNGCNNFCSYCIVPYV 174
Query: 199 RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL---S 255
RG EISR L ++ E L + GV EITLLGQNVN++RG+ +G TF LL + +
Sbjct: 175 RGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRA 234
Query: 256 EIKGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314
E+ +R +R+ +SHP+D+SD LI L +HLPVQ GS+ +LK MNR +T
Sbjct: 235 EVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREH 294
Query: 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
Y ++ ++++ P++A+S+D ++GFPGET++DF T+DL+ ++ + AF + Y+PR GTP
Sbjct: 295 YLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTP 354
Query: 375 GSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGK-EKGKLVGRSP 433
+ +++ + VK RL + + A VG+ + VL+E + +L G +
Sbjct: 355 AYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVESRSRNNPEELFGHTE 414
Query: 434 WLQSVVLNSKNHN--IGDIIKVRITDVKISTLYGELV 468
+ VL K IG + V++ +++ T LV
Sbjct: 415 LGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLV 451
>gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 440
Score = 317 bits (813), Expect = 4e-87
Identities = 165/439 (37%), Positives = 249/439 (56%), Gaps = 19/439 (4%)
Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90
+YGCQMN YD+ +E S G E V+S+D+AD +++NTC +R K EKV S LG +R
Sbjct: 7 TYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELR-- 64
Query: 91 KNSRIKEGGDLLVVVAGCVAQ-AEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRV 149
+ K L+V + GC+AQ EG+++ R+ V+V++GP + + LE +R
Sbjct: 65 ---KEKAQRPLVVGMMGCLAQLEEGQQMARKFG-VDVLLGPGALTDIGKALEA---NERF 117
Query: 150 VDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ 209
+ ++ + + G ++A LTI GC+ CT+C+VP TRG E+SR
Sbjct: 118 WGLQFK-DELHDHIPPPPQG-----KLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDL 171
Query: 210 VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
++ E L GV E+TLLGQNVN++ G G +F++LL + G+ R+++TTSH
Sbjct: 172 ILRELELLKAAGVQEVTLLGQNVNSY-GVDQPGFP-SFAELLRLVGAS-GIPRVKFTTSH 228
Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
P + +D +I A + + Y+HLPVQSGSDR+L+ M R + +Y + I IR PD+
Sbjct: 229 PMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDV 288
Query: 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAE 389
+S+D IVGFPGET++DF+ T+ L D++GY A+ F YSPR GTP + + VK E
Sbjct: 289 VLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTE 348
Query: 390 RLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGD 449
RL L +K +E N VG+ EVL+ K+ G L G + V++ +
Sbjct: 349 RLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTRGNHPVLVPASQAPGPG 408
Query: 450 IIKVRITDVKISTLYGELV 468
+ +VRI LYGE+V
Sbjct: 409 LYQVRIKQATPHMLYGEVV 427
>gnl|CDD|172808 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 449
Score = 301 bits (772), Expect = 3e-82
Identities = 162/468 (34%), Positives = 266/468 (56%), Gaps = 32/468 (6%)
Query: 15 SQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
Q+++ + ++++YGCQMN YDS + + Y N +++D+I LNTC IRE
Sbjct: 1 MQVLEPEKKLGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRE 60
Query: 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYY 134
A K+Y+ L + LK K +L++ V GC+AQ G+++ + +++VVGP Y
Sbjct: 61 NAHAKIYNRLQSLGYLK----KRNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYR 116
Query: 135 RLPELLERARFGKRVVD-TDYSVEDKFERLS--IVDGGYNRKRGVTAFLTIQEGCDKFCT 191
LPEL++R R G++ + T S + ++ + +V+G + AF+TI GC+ FCT
Sbjct: 117 SLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNG-------IQAFVTIMRGCNNFCT 169
Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251
FCVVPYTRG E SR +V E + L + G+ ++TLLGQNVN+++ + D F+ L+
Sbjct: 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTD-----FAGLI 224
Query: 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT 311
L + + R+R+T+ HP+D D L+ P +HLP+Q+G+ R+L+ M R ++
Sbjct: 225 QMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYS 284
Query: 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371
E+ ++ IR++ PD+ I++D IVGFP ET+++F T+ +V ++ + AF FKYS R
Sbjct: 285 KEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSERE 344
Query: 372 GTPGSNML-EQVDENVKAER---LLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-KEKG 426
GT L + V E VK+ R L+ LQ + +Q N A +G++ +LIE K +
Sbjct: 345 GTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQ---NRARIGRVYSILIENTSRKSEK 401
Query: 427 KLVGRSPWLQSVVL-----NSKNHNIGDIIKVRITDVKISTLYGELVV 469
+L GR+P + V + IG + V I +TL G+++V
Sbjct: 402 QLCGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKILV 449
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 418
Score = 298 bits (764), Expect = 2e-81
Identities = 154/443 (34%), Positives = 243/443 (54%), Gaps = 34/443 (7%)
Query: 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGR 86
+++ + GCQMN +S R+ +F GY + +DA+L+++N+C +RE A KV + L
Sbjct: 4 YYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHL 63
Query: 87 IRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG 146
+R LKN K L + + GC+ + I ++ P V+ + GP + +P+ E
Sbjct: 64 LRKLKNKNPK----LKIALTGCLVGQDISLIRKKFPFVDYIFGPGS---MPDWRE----- 111
Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
+ + F I+ K V+A +TI +GCD FCT+CVVPY RG E SRS
Sbjct: 112 ---------IPEGF----ILPL----KPPVSANVTIMQGCDNFCTYCVVPYRRGREKSRS 154
Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
++++ E +L+ G E+ LLGQNV+++ G L + C +DLL +L +I GL+R+R+
Sbjct: 155 IAEIGCEVAELVRRGSREVVLLGQNVDSY-GHDLPEKPC-LADLLSALHDIPGLLRIRFL 212
Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
TSHP+D+S LI A L + L LPVQ+G D IL +M R +T +YR++++R+++
Sbjct: 213 TSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM 272
Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDEN 385
PDI++ +D IVGFP ET++ F + L+ IGY YSPR T + +M + V
Sbjct: 273 PDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVI 332
Query: 386 VKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNH 445
K RL ++ +E N A + EVL+E G +K K GR+ + V L S
Sbjct: 333 EKKRRLKLIEDLQKETVGKANAALMDTFAEVLVE--GLQKNKWQGRTLGGKLVFLESDLP 390
Query: 446 NIGDIIKVRITDVKISTLYGELV 468
G ++ V+I +L +LV
Sbjct: 391 LEGCLVNVKIFKTSPWSLQAKLV 413
>gnl|CDD|162433 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This
clade is a member of a subfamily (TIGR00089) and spans
low GC Gram positive bacteria, alpha and epsilon
proteobacteria, Campylobacter, Porphyromonas, Aquifex,
Thermotoga, Chlamydia, Treponema and Fusobacterium.
Length = 414
Score = 279 bits (715), Expect = 1e-75
Identities = 136/430 (31%), Positives = 239/430 (55%), Gaps = 19/430 (4%)
Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
+++ GC++N Y+S +++ +GYE V D AD+ ++NTC + KA K + R R
Sbjct: 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRAR 60
Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--ARFG 146
++ ++V GC AQ+ +E+ V++V+G + ++ +LL
Sbjct: 61 -------RQNPTAKIIVTGCYAQSNPKELADL-KDVDLVLGNKEKDKINKLLSLGLKTSF 112
Query: 147 KRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRS 206
RV + ++S E + AF+ +Q+GC+ FC++C++P+ RG S
Sbjct: 113 YRVKNKNFSREKGVPEYEE----VAFEGHTRAFIKVQDGCNFFCSYCIIPFARGRSRSVP 168
Query: 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYT 266
+ ++ + + L+ G EI L G N+ ++ G L + + LL + +I G+ R+R +
Sbjct: 169 MEAILKQVKILVAKGYKEIVLTGVNLGSY-GDDLKN-GTSLAKLLEQILQIPGIKRIRLS 226
Query: 267 TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
+ P D+ + L++A L P+LHL +QSGSDR+LK M R++T ++ ++++++RSVR
Sbjct: 227 SIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR 286
Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386
PD A +D IVGFPGE+++DF+ T+ +V +I ++ F YS R GTP S M ++V E +
Sbjct: 287 PDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETI 346
Query: 387 KAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSV-VLNSKNH 445
K ER+ L++ + F +G+ +EVL+EK ++ G L G S + V V + K
Sbjct: 347 KKERVKRLKELAEKNYQEFLKKNIGKELEVLVEK--EKAGVLTGYSEYYLKVKVESDKGV 404
Query: 446 NIGDIIKVRI 455
G++I VRI
Sbjct: 405 AAGELISVRI 414
>gnl|CDD|162211 TIGR01125, TIGR01125, MiaB-like tRNA modifying enzyme YliG,
TIGR01125. This clade spans alpha and gamma
proteobacteria, cyano bacteria, deinococcus,
porphyromonas, aquifex, helicobacter, campylobacter,
thermotoga, chlamydia, streptococcus coelicolor and
clostridium, but does not include most other gram
positive bacteria, archaea or eukaryotes.
Length = 430
Score = 264 bits (677), Expect = 3e-71
Identities = 142/449 (31%), Positives = 227/449 (50%), Gaps = 34/449 (7%)
Query: 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIR 88
S GC N+ DS M + GYE + +DAD +++NTC E A ++ +G
Sbjct: 4 FISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIG--- 60
Query: 89 NLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKR 148
G V+V GC+ Q EE+ P V+ + G + +E G +
Sbjct: 61 ----ELADAGKK--VIVTGCLVQRYKEELKEEIPEVHAITGSGDVENILNAIESREPGDK 114
Query: 149 VVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS 208
+ + R+ + Y A+L + EGC++ C FC++P RG SR +
Sbjct: 115 IPFKSEIEMGEVPRILLTPRHY-------AYLKVAEGCNRRCAFCIIPSIRGKLRSRPIE 167
Query: 209 QVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTS 268
+++ EA +L+D GV EI L+ Q+ A+ GK L E DLL L ++ G+ +R
Sbjct: 168 EILKEAERLVDQGVKEIILIAQDTTAY-GKDLYRES-KLVDLLEELGKVGGIYWIRMHYL 225
Query: 269 HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328
+P +++D +I + ++PYL +P+Q SDRILK M R + + I+R+R PD
Sbjct: 226 YPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPD 285
Query: 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388
+ + FIVGFPGET++DF+ +D V++ + + +F YSP GT + +QV E VK
Sbjct: 286 AVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345
Query: 389 ER---LLCLQKKLREQQVSFNDACVGQIIEVLIE-KHGKEKGKLVGRSPWLQS------V 438
ER L+ LQ+++ ++ N VG+ IEVLI+ + L+GR+ + Q+ V
Sbjct: 346 ERLERLMQLQQRISAKK---NQEFVGKKIEVLIDGYEPETNLLLIGRT-YGQAPEVDGVV 401
Query: 439 VLNSK--NHNIGDIIKVRITDVKISTLYG 465
+N N IGDI++V IT L+G
Sbjct: 402 YVNGAKLNVKIGDILRVVITGTDEYDLWG 430
>gnl|CDD|162432 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme,
archaeal-type. This clade is a member of a subfamily
(TIGR00089) and spans the archaea and eukaryotes. The
only archaeal miaB-like genes are in this clade, while
eukaryotes have sequences described by this model as
well as ones falling within the scope of the MiaB
equivalog model.
Length = 420
Score = 235 bits (602), Expect = 2e-62
Identities = 146/451 (32%), Positives = 233/451 (51%), Gaps = 39/451 (8%)
Query: 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLG 85
+ +V++YGC +N DS M++ + G+E VN+ ++ADL +LNTC ++ K + L
Sbjct: 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDT---MLY 57
Query: 86 RIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER--- 142
RI +L G VVVAGC+ QA+ E + + +V+ G Q RL E++E
Sbjct: 58 RIESLMR----NGKH--VVVAGCMPQAQKESVYDNGSVASVL-GVQAIDRLVEVVEETLK 110
Query: 143 -ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGI 201
G+R T S+ RK + + I +GC C++C+ + RG
Sbjct: 111 KKVHGRREAGTPLSLPKP------------RKNPLIEIIPINQGCLGNCSYCITKHARGK 158
Query: 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLSEIKGL 260
S ++V++AR+L+ G EI + Q+ A+ G D G + +LL ++EI G
Sbjct: 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAY---GRDIGSR--LPELLRLITEIPGE 213
Query: 261 VRLRYTTSHPRD---MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317
RLR +P++ + D L + + + +LHLPVQSGSD +LK M R +T ++
Sbjct: 214 FRLRVGMMNPKNVLEILDELANVY-QHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFED 272
Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377
I+D+ R PD+ +S+D IVGFP ETDDDF TM+L+ K + K+SPR GTP +
Sbjct: 273 IVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAK 332
Query: 378 MLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQS 437
M +++ N+ +R L K + + D +G + VL+ K G KG + +
Sbjct: 333 M-KRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEG--KGDSLDDEDAYRQ 389
Query: 438 VVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
VV+ S+ G+ V IT K + L GE++
Sbjct: 390 VVIRSRTREPGEFAGVEITGAKTAYLIGEII 420
>gnl|CDD|184864 PRK14862, rimO, ribosomal protein S12 methylthiotransferase;
Provisional.
Length = 440
Score = 198 bits (506), Expect = 2e-51
Identities = 154/482 (31%), Positives = 235/482 (48%), Gaps = 94/482 (19%)
Query: 28 FVKSYGCQMNVYDS------LRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVY 81
FV S GC + DS LR E GYE S D ADL+++NTC + A ++
Sbjct: 12 FV-SLGCPKALVDSERILTQLRAE------GYEISPSYDGADLVIVNTCGFIDSAVQESL 64
Query: 82 SFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLE 141
+G + E G V+V GC+ A+ ++I P V V GP Y
Sbjct: 65 EAIG-------EALAENGK--VIVTGCLG-AKEDQIREVHPKVLAVTGPHAY-------- 106
Query: 142 RARFGKRVVDTDYSV----EDKFERLSIVDGGYNRKRGVT------AFLTIQEGCDKFCT 191
++V++ + D F + +V +GV A+L I EGC+ CT
Sbjct: 107 -----EQVMEAVHEHVPKPHDPF--VDLVP-----PQGVKLTPRHYAYLKISEGCNHRCT 154
Query: 192 FCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA-----------WRGKGL 240
FC++P RG +SR + V+ EA +L+ GV E+ ++ Q+ +A W G+ +
Sbjct: 155 FCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV 214
Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD 300
K +DL +L E+ VRL Y +P D +I + +L PYL +P Q S
Sbjct: 215 ---KTRMTDLCEALGELGAWVRLHYVYPYPH--VDEVIPLMAEGKIL-PYLDIPFQHASP 268
Query: 301 RILKSMNRRHTAYEYRQIIDRIRSVR---PDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
R+LK M +R + E + ++RI+ R PD+ I S FIVGFPGET++DF+ +D + +
Sbjct: 269 RVLKRM-KRPASVE--KTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKE- 324
Query: 358 GYAQ---AFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN--DACVGQ 412
AQ FKYSP G +++ +QV E VK ER + +QQ+S VG+
Sbjct: 325 --AQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEV--QQQISAARLQRKVGR 380
Query: 413 IIEVLIEKHGKEKGKLVGRS----PWLQSVV--LNSKNHNIGDIIKVRITDVKISTLYGE 466
++VLI++ +E +GRS P + VV +GDI++V+ITD L+GE
Sbjct: 381 TLQVLIDEVDEEGA--IGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGE 438
Query: 467 LV 468
+V
Sbjct: 439 VV 440
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 159 bits (403), Expect = 2e-39
Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%)
Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235
A I GC + CTFC P RG SR L +V E L + G EI L+G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEI-LVGTVFIGG 59
Query: 236 RGKGLDGEKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
L + +LL ++ EI GL + P +++ L++A + V + L
Sbjct: 60 GTPTLLSPE-QLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGV--NRVSL 116
Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
VQSGSD +LK++NR HT + + ++++R P I +S+D IVG PGET++DF T+ L
Sbjct: 117 GVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGP-IKVSTDLIVGLPGETEEDFEETLKL 175
Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391
+ ++G + F SPR GTP + + +++ K ERL
Sbjct: 176 LKELGPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERL 213
>gnl|CDD|181291 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional.
Length = 488
Score = 46.4 bits (111), Expect = 2e-05
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI---AISSDFIVGFPGETDDDFRATMD 352
Q+ +D LK++ R HT II++ R ++ I+ D I+G PGE ++ + T++
Sbjct: 288 QTMNDETLKAIGRHHT---VEDIIEKFHLAR-EMGFDNINMDLIIGLPGEGLEEVKHTLE 343
Query: 353 LVDK 356
++K
Sbjct: 344 EIEK 347
>gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM
protein HpnJ. One of the well-described hopanoid
intermediates is bacteriohopanetetrol. In the conversion
from hopene several reactions must occur in the side
chain for which a radical mechanism might be reasonable.
These include the four (presumably anaerobic)
hydroxylations and a methyl shift.
Length = 472
Score = 45.1 bits (107), Expect = 4e-05
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 38/181 (20%)
Query: 185 GCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEK 244
GC CTFC+ P T G R+ S ++ + E+ +N R D +
Sbjct: 205 GCPSKCTFCLWPQTVGGHRYRTRSA---------ESVIEEVKYALENFPEVREFFFDDD- 254
Query: 245 CTFSDLLYSLSEI-KGLVRLRYTTSHPRDMSDCLIKAHGDLDVL-------MPYLHLPVQ 296
TF+D EI + L L T S C +A+ D + L + L + +
Sbjct: 255 -TFTDDKPRAEEIARKLGPLGVTWS-------CNARANVDYETLKVMKENGLRLLLVGYE 306
Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-----IAISSDFIVGFPGETDDDFRATM 351
SG +ILK++ + T ++ R D I + FI+G PGET + R T+
Sbjct: 307 SGDQQILKNIKKGLT-------VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTI 359
Query: 352 D 352
D
Sbjct: 360 D 360
>gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family. This
uncharacterized protein family shows significant
similarity to TIGR01211, a longer protein that is a
histone acetyltransferase at its C-terminus and is a
subunit of RNA polymerase II (in yeast). This family
lacks the GNAT acetyltransferase domain.
Length = 302
Score = 44.4 bits (105), Expect = 6e-05
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 275 DCLIKAHGDLDVLMPY--------LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326
DC+ LD+L Y + L +Q+ D+ LK +NR H Y + R R +
Sbjct: 119 DCVPDEV--LDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRAR--K 174
Query: 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358
I + S I+G PGE ++ T +V +
Sbjct: 175 RGIKVCSHVILGLPGEDREEMMETAKIVSLLD 206
>gnl|CDD|180172 PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.
Length = 375
Score = 41.5 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354
QS + +L ++R HT R+ + ++ D I G PGE+DDD+RA++D
Sbjct: 127 QSAAPHVLAVLDRTHTPGRAVAAAREARAAGFE-HVNLDLIYGTPGESDDDWRASLDAA 184
>gnl|CDD|181509 PRK08629, PRK08629, coproporphyrinogen III oxidase; Provisional.
Length = 433
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMD 352
VQS +D ILK ++R ++ ++I I I+ D I FPG+TD+ + +D
Sbjct: 163 VQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPI-INVDLIFNFPGQTDEVLQHDLD 221
Query: 353 LVDKIGYAQ 361
+ ++ Q
Sbjct: 222 IAKRLDPRQ 230
>gnl|CDD|181630 PRK09058, PRK09058, coproporphyrinogen III oxidase; Provisional.
Length = 449
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIR--SVRPDIAISSDFIVGFPGETDDDFRATMD 352
VQS + ++ + R+ +++ R+ R A+ D I G PG+T + ++ +
Sbjct: 181 VQSFNTQVRRRAGRKDDR---EEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLA 237
Query: 353 LVDKIG 358
+V +G
Sbjct: 238 IVRDLG 243
>gnl|CDD|181496 PRK08599, PRK08599, coproporphyrinogen III oxidase; Provisional.
Length = 377
Score = 38.3 bits (90), Expect = 0.005
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 284 LDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339
L VL + L VQ+ +D +LK + R H + + I + D IS D I
Sbjct: 103 LQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFD-NISIDLIYAL 161
Query: 340 PGETDDDFRATMD 352
PG+T +DF+ ++
Sbjct: 162 PGQTIEDFKESLA 174
>gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional.
Length = 279
Score = 36.1 bits (84), Expect = 0.017
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 185 GCDKFCTFCVVPYTRGIEISR----SLSQVVDEARKLIDNGV---CEITLLGQNVNAWRG 237
C + C +C +I R + Q+V EA+ NG C +T G
Sbjct: 16 NCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVT---------SG 66
Query: 238 KGLDGEKCTF 247
+GLD +K +
Sbjct: 67 RGLDDKKLEY 76
>gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional.
Length = 374
Score = 34.2 bits (79), Expect = 0.066
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD 355
Q+ + +LK + R HT E+ + R + + I+ D + G P +T +D++ T++ V
Sbjct: 118 QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN-NINVDLMFGLPNQTLEDWKETLEKVV 176
Query: 356 KI 357
++
Sbjct: 177 EL 178
>gnl|CDD|181629 PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional.
Length = 380
Score = 34.5 bits (80), Expect = 0.067
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
L VQ+ +D L+ + R H+ E ID R + P +S D I PG+T +RA +
Sbjct: 120 LGVQALNDADLRFLGRLHSVAEALAAIDLAREIFP--RVSFDLIYARPGQTLAAWRA--E 175
Query: 353 LVDKIGYA 360
L + + A
Sbjct: 176 LKEALSLA 183
>gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated.
Length = 430
Score = 33.4 bits (77), Expect = 0.14
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFPGETDDDFRATMD 352
VQS D L +++R + Q ++ IR+ P + I D I G PG+T + ++D
Sbjct: 159 VQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNI--DLIYGIPGQTHASWMESLD 215
>gnl|CDD|181727 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 31.2 bits (72), Expect = 0.54
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 295 VQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS---DFIVGFPGETDDDFRATM 351
VQ + K++NR +++ R ++ +S D I G P +T + F T+
Sbjct: 169 VQDFDPEVQKAVNRIQPFEFTFALVEAAR----ELGFTSINIDLIYGLPKQTPESFARTL 224
Query: 352 DLV-----DKI---GYA 360
+ V D++ YA
Sbjct: 225 EKVLELRPDRLAVFNYA 241
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 30.5 bits (70), Expect = 0.89
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 43 RMEDMFFSQGYERVNSMDDADLIVLNTCHIRE 74
R+E M FS+ E+ + + D IV+ +
Sbjct: 1011 RIEVMLFSEALEKYRDLLEEDRIVVVKGQVSF 1042
>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha.
Length = 808
Score = 29.5 bits (66), Expect = 1.7
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQ-------GYERVNSMDDADLIVLNTCHIREK 75
VP FF + GC++++Y + D F + YE +D + N H+
Sbjct: 168 VPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYI 227
Query: 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLV 103
VY+ + +R+ + R K GGD+ +
Sbjct: 228 TGWSVYTEISLVRD--SRRPKPGGDVTI 253
>gnl|CDD|180953 PRK07379, PRK07379, coproporphyrinogen III oxidase; Provisional.
Length = 400
Score = 29.6 bits (67), Expect = 1.8
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
L VQ+ D +L R H + +D I S D I G P +T +D++A+++
Sbjct: 131 LGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI-ENFSLDLISGLPHQTLEDWQASLE 189
Query: 353 LVDKIG 358
+
Sbjct: 190 AAIALN 195
>gnl|CDD|180115 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 29.3 bits (67), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
++ R + + P I S +VG GETD++ MD
Sbjct: 185 LLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMD 218
>gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 354
Score = 28.9 bits (65), Expect = 2.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 174 RGVTAFLTIQEGCDKFCTFC---VVPYTRGIEISRSLSQVVDEARKLIDNGV 222
R T L+ Q GC CTFC + + R + + L QV+ L DNG
Sbjct: 100 RRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGP 151
>gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1;
Reviewed.
Length = 73
Score = 28.7 bits (65), Expect = 2.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 413 IIEVLIEKHGKEKGKLVGRS---PWLQSVVLNSKNHNIGDIIKV 453
+ +VL H KGKL+ R P + SVV + K IG ++ V
Sbjct: 4 LGKVL---HYAPKGKLIIRLDKQPPIGSVVYDKKLKKIGKVVDV 44
>gnl|CDD|135651 PRK05904, PRK05904, coproporphyrinogen III oxidase; Provisional.
Length = 353
Score = 28.6 bits (64), Expect = 3.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
L VQS ++ ILK +NR HT + ++ I+ + IS DF+ P D +
Sbjct: 119 LGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGI-YNISCDFLYCLPILKLKDLDEVFN 177
Query: 353 LVDK 356
+ K
Sbjct: 178 FILK 181
>gnl|CDD|131081 TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester
anaerobic oxidative cyclase. This model respresents the
cobalamin-dependent oxidative cyclase responsible for
forming the distinctive E-ring of the chlorin ring
system under anaerobic conditions. This step is
essential in the biosynthesis of both
bacteriochlorophyll and chlorophyll under anaerobic
conditions (a separate enzyme, AcsF, acts under aerobic
conditions). This model identifies two clades of
sequences, one from photosynthetic, non-cyanobacterial
bacteria and another including Synechocystis and several
non-photosynthetic bacteria. The function of the
Synechocystis gene is supported by gene clustering with
other photosynthetic genes, so the purpose of the gene
in the non-photosynthetic bacteria is uncertain. Note
that homologs of this gene are not found in plants which
rely solely on the aerobic cyclase.
Length = 497
Score = 28.7 bits (64), Expect = 3.3
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 303 LKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQA 362
L + T ++ I +R + +I + FI GF ETD+ F T + QA
Sbjct: 313 LDHFRKGTTTSTNKEAIRLLR--QHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA 370
Query: 363 FSFKYSPRLGTP 374
Y+P T
Sbjct: 371 NWLMYTPWPFTS 382
>gnl|CDD|129630 TIGR00539, hemN_rel, putative oxygen-independent coproporphyrinogen
III oxidase. Experimentally determined examples of
oxygen-independent coproporphyrinogen III oxidase, an
enzyme that replaces HemF function under anaerobic
conditions, belong to a family of proteins described by
the model hemN. This model, hemN_rel, models a closely
related protein, shorter at the amino end and lacking
the region containing the motif PYRT[SC]YP found in
members of the hemN family. Several species, including
E. coli, Helicobacter pylori, Aquifex aeolicus, and
Chlamydia trachomatis, have members of both this family
and the E. coli hemN family. The member of this family
from Bacillus subtilis was shown to complement an
hemF/hemN double mutant of Salmonella typimurium and to
prevent accumulation of coproporphyrinogen III under
anaerobic conditions, but the exact role of this protein
is still uncertain. It is found in a number of species
that do not synthesize heme de novo.
Length = 360
Score = 28.7 bits (64), Expect = 3.5
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGET----DDD 346
L L VQS D L + R+H+A I+ + IS D + G P +T ++
Sbjct: 114 LSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE-NISLDLMYGLPLQTLNSLKEE 172
Query: 347 FRATMDL 353
+ +L
Sbjct: 173 LKLAKEL 179
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase.
This model represents HemN, the oxygen-independent
coproporphyrinogen III oxidase that replaces HemF
function under anaerobic conditions. Several species,
including E. coli, Helicobacter pylori, and Aquifex
aeolicus, have both a member of this family and a member
of another, closely related family for which there is no
evidence of coproporphyrinogen III oxidase activity.
Members of this family have a perfectly conserved motif
PYRT[SC]YP in a region N-terminal to the region of
homology with the related uncharacterized protein.
Length = 455
Score = 28.2 bits (63), Expect = 4.1
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350
L VQ + + +++NR ++++ R +I+ D I G P +T + F T
Sbjct: 165 LSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFT-SINIDLIYGLPKQTKESFAKT 223
Query: 351 MDLV-----DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSF 405
++ V D++ F++ + P ++ + L ++KL Q +
Sbjct: 224 LEKVAELNPDRLA---VFNYAHVP--------WVKPAQRKIPEAALPSAEEKLDILQETI 272
Query: 406 ND 407
Sbjct: 273 AF 274
>gnl|CDD|162009 TIGR00717, rpsA, ribosomal protein S1. This model provides trusted
hits to most long form (6 repeat) examples of RpsA.
Among homologs with only four repeats are some to which
other (perhaps secondary) functions have been assigned.
Length = 516
Score = 28.2 bits (63), Expect = 4.6
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 410 VGQIIEVLIEKHGKEKGKL------VGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTL 463
VGQ ++V + K KEKG++ +G PW K +GD I R+T++ T
Sbjct: 233 VGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAI----EKKFPVGDKITGRVTNL---TD 285
Query: 464 YGELV 468
YG V
Sbjct: 286 YGVFV 290
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional.
Length = 644
Score = 27.9 bits (63), Expect = 5.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 447 IGDIIKVRITDVKIST 462
+GD+I V + +V++ T
Sbjct: 621 LGDVIDVTLAEVRMET 636
>gnl|CDD|179482 PRK02842, PRK02842, light-independent protochlorophyllide reductase
subunit N; Provisional.
Length = 427
Score = 27.6 bits (62), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 17/44 (38%)
Query: 306 MNRRHTAYE----------------YRQIIDRIRSVRPDIAISS 333
+NRR A E RQ+ DRIR++RPD+ +
Sbjct: 325 LNRRFLAAELALLPDGVRIVEGQDVERQL-DRIRALRPDLVVCG 367
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 27.5 bits (61), Expect = 6.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232
Y GIE + LSQ+V+ AR D G+ +T G NV
Sbjct: 319 YMIGIETTADLSQLVEAAR---DKGLIVLT-AGTNV 350
>gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine
deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase; Reviewed.
Length = 464
Score = 27.6 bits (62), Expect = 6.9
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 55 RVNSMDDADLIVLNTCH---------IREKAAEKVYSFLGRIRNLKNSRIKEGGDL---L 102
R+ M D D VL + H +E A + + FL + L + +GGDL +
Sbjct: 156 RITVMVDFDSKVLGSQHATLFDLSEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAI 215
Query: 103 VVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPEL 139
V+V ++Q E +++ ++ ++ V L
Sbjct: 216 VIVDKEMSQEELDKLAKKFGKDHISVKENGILNNRPL 252
>gnl|CDD|180520 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 565
Score = 27.4 bits (62), Expect = 7.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 410 VGQIIEVLIEKHGKEKGKL------VGRSPWLQSVVLNSKNHNIGDIIKVRITDVK 459
G +E ++ K EK ++ + P+ + K H G I+ +T+VK
Sbjct: 421 KGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEFA----KKHKKGSIVTGTVTEVK 472
>gnl|CDD|177473 PHA02691, PHA02691, hypothetical protein; Provisional.
Length = 110
Score = 27.3 bits (60), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
R R T +H R+ S +K GD+ L+P L L
Sbjct: 77 RARVTVAHGREKSTFDLKRRGDVQTLLPILLL 108
>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 27.5 bits (62), Expect = 8.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 52 GYERVNSMDDA--DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109
ER ++ +A D++V++T H + L R+R IK + ++AG V
Sbjct: 229 NEERAEALVEAGVDVLVVDTAHGHSEGV------LDRVR-----EIKAKYPDVQIIAGNV 277
Query: 110 AQAEG 114
A AE
Sbjct: 278 ATAEA 282
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.140 0.409
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,780,213
Number of extensions: 520571
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 66
Length of query: 469
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,898,497
Effective search space: 1450240884
Effective search space used: 1450240884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)