RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase
(miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
         (469 letters)



>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium; HET: CXS; 2.00A {Thermotoga
           maritima MSB8}
          Length = 304

 Score =  202 bits (513), Expect = 1e-52
 Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 8/296 (2%)

Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237
           A++ I +GCD+ CTFC +P  +G   SRS+  +  E   L+  G  EI L+ Q+  ++  
Sbjct: 6   AYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGI 65

Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297
                 K    DLL  L+ + G   +R    HP  +++ +I A  +LD ++ Y  +PVQ 
Sbjct: 66  D--LYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQH 123

Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357
           GSD+ILK M R  ++ E ++++  IR   PD  + +  IVGFPGET++DF      V++I
Sbjct: 124 GSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEI 183

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417
            + +  +F YS   GT   N+ E+VD  +   R   L     E   S  D  VG+ ++ L
Sbjct: 184 QFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFL 243

Query: 418 IEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
           +E  GKE   LVGR+    P +  VV       IGD ++V I +     ++G +++
Sbjct: 244 VE--GKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVIL 297


>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme
           biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S
           cluster; HET: SAM; 2.07A {Escherichia coli} SCOP:
           c.1.28.2
          Length = 457

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 19/202 (9%)

Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDE----ARKLIDNGVCEITLLGQNVNAWRGK 238
           C K C FC    +   +  +  + L  +  E    A       V ++   G         
Sbjct: 62  CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKA 121

Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296
            +         L+  L E          +    PR++   ++            L + VQ
Sbjct: 122 QIS-------RLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGF--NRLSMGVQ 172

Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356
             +  + + +NR         +++  R      + + D I G P +T + F  T+  V +
Sbjct: 173 DFNKEVQRLVNREQDEEFIFALLNHARE-IGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231

Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378
           +   +   F Y+       +  
Sbjct: 232 LNPDRLSVFNYAHLPTIFAAQR 253


>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
           cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
           beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
           maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
          Length = 348

 Score = 61.9 bits (149), Expect = 3e-10
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 18/205 (8%)

Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVN 233
           + A +     C K C +C +           ++  ++V+ AR  +  G   I L      
Sbjct: 53  IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQ----- 107

Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293
                   GE       + S  +I   ++                      +       L
Sbjct: 108 -------SGEDPYXMPDVIS--DIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLL 158

Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353
             ++ +  + + +    +       +  ++ +  +       +VG PG+T DD    +  
Sbjct: 159 RHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGA--GSMVGLPGQTIDDLVDDLLF 216

Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM 378
           + +  +       + P   TP +N 
Sbjct: 217 LKEHDFDMVGIGPFIPHPDTPLANE 241


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 68/200 (34%)

Query: 299  SDRILKSMNRRHTAYEYRQ---IIDRIRSVRPDIAI----------SSDFI---VGFPGE 342
            +++I K +N   T+Y +R    ++   +  +P + +          S   I     F G 
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762

Query: 343  TDDDFRATMDLVD--------KIGYAQAFSFKYS-PR--LGTPGSNMLEQVDENVKAERL 391
            +  ++ A   L D        ++ + +  + + + PR  LG     M+      +   R+
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-----INPGRV 1817

Query: 392  LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI---- 447
                        SF+     + ++ ++E+ GK  G       WL  +V    N+N+    
Sbjct: 1818 ----------AASFSQ----EALQYVVERVGKRTG-------WLVEIV----NYNVENQQ 1852

Query: 448  ----GDIIKVRITDVKISTL 463
                GD+   R  D   + L
Sbjct: 1853 YVAAGDL---RALDTVTNVL 1869



 Score = 34.5 bits (79), Expect = 0.048
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 14  VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHI 72
            S ++++ +V       +   Q+ VYD+    D+   +     +  +   D I+      
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---RVLS-GSISERIVDCIIRLPVKW 490

Query: 73  REKA----AEKVYSF-------LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117
            E      A  +  F       LG    L + R K+G  + V+VAG +     ++ 
Sbjct: 491 -ETTTQFKATHILDFGPGGASGLG---VLTH-RNKDGTGVRVIVAGTLDINPDDDY 541


>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
           transferase; HET: SAM DTB; 3.40A {Escherichia coli}
           SCOP: c.1.28.1
          Length = 369

 Score = 37.8 bits (87), Expect = 0.006
 Identities = 31/207 (14%), Positives = 56/207 (27%), Gaps = 24/207 (11%)

Query: 185 GCDKFCTFC--VVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240
            C + C +C     Y  G+E  R +   QV++ ARK    G     +             
Sbjct: 75  ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMG------------ 122

Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
              K      +  L ++   V+            +S+   +   +  +   Y H      
Sbjct: 123 AAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDY-YNHNL---D 178

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KI 357
           +             Y+ R      +     I + S  IVG      D     + L +   
Sbjct: 179 TSPEFYGNIITTRTYQERLDTLE-KVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPT 237

Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDE 384
                         GTP ++  +    
Sbjct: 238 PPESVPINMLVKVKGTPLADNDDVDAF 264


>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural
           genomics center for infectious disease; 1.80A {Brucella
           melitensis biovar abortus 230ORGANISM_TAXID}
          Length = 269

 Score = 37.1 bits (85), Expect = 0.009
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 24/198 (12%)

Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ---NVNAWRGKGLDGEKC- 245
                  +  G     ++S    E R  +D  +     L     +  +   +GLD + C 
Sbjct: 67  FNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACE 126

Query: 246 -TFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298
            TF +     ++         LV    T + P       ++A            L  +  
Sbjct: 127 ETFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAV----------GLVKRVN 176

Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGETDDDFRATMDLVD 355
              +   ++  H       +   I  +    +   I+S      P E + ++     +++
Sbjct: 177 RPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLE 236

Query: 356 KIGYAQAFSFKYSPRLGT 373
            +GY      +Y+PR  T
Sbjct: 237 SVGYRGWVGCEYNPRGKT 254


>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM
           radical, activase, glycyl radical, 4Fe- 4S, carbohydrate
           metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia
           coli} PDB: 3cb8_A*
          Length = 245

 Score = 35.7 bits (81), Expect = 0.020
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 30/207 (14%)

Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-----QVVDE 213
            FE    VDG   R      F     GC   C +C    T      + ++     + V  
Sbjct: 8   SFESCGTVDGPGIR---FITFFQ---GCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVT 61

Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273
            R  ++     +T  G           D  +    + +++  +  G VR         ++
Sbjct: 62  YRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVID--EL 119

Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333
            +       DL  +   +H         ++   N R   +        ++     + +  
Sbjct: 120 LEVTDLVMLDLKQMNDEIHQ-------NLVGVSNHRTLEFAKYLANKNVKVWIRYVVV-- 170

Query: 334 DFIVGFPGETD--DDFRATMDLVDKIG 358
                 PG +D  D      +    +G
Sbjct: 171 ------PGWSDDDDSAHRLGEFTRDMG 191


>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics,
           PSI, protein structure initiative, midwest center for
           structural genomics; 1.63A {Escherichia coli} SCOP:
           c.1.15.5
          Length = 260

 Score = 35.3 bits (80), Expect = 0.028
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
               +  +  R    +   V+    I+       P + + ++     L D++GY      
Sbjct: 184 KVDGNLTHLIRDYAGKYAHVQ----IAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGC 239

Query: 366 KYSPRLGT 373
           +Y PR  T
Sbjct: 240 EYKPRGLT 247


>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-
           epimerase, D-tagatose 3-epimerase, isomerase; 2.20A
           {Thermotoga maritima}
          Length = 290

 Score = 34.2 bits (77), Expect = 0.070
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374
             PG    DFR+  + + +IGY +  S +  P  G  
Sbjct: 235 WAPGCGHFDFRSVFNTLKEIGYNRYVSVECLPLPGGM 271


>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium
           tumefaciens} PDB: 2hk1_A*
          Length = 309

 Score = 33.7 bits (76), Expect = 0.089
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 3/158 (1%)

Query: 211 VDEARKLIDNGV-CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269
                + + N    +I  +G  ++++             D    +  I G+         
Sbjct: 106 KAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGI 165

Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329
              +       +  L+     +      G + +   ++  H   E     D IR+  P +
Sbjct: 166 NLCIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKVMLDTFHMNIEEDSFGDAIRTAGPLL 225

Query: 330 AIS--SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
                 +     PG+    +      +  I Y  A   
Sbjct: 226 GHFHTGESNRRVPGKGRMPWHEIGLALRDINYTGAVIM 263


>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural
           genomics, autoqf, PSI, protein structure initiative; NMR
           {Methanococcus maripaludis} SCOP: b.40.4.12
          Length = 70

 Score = 33.1 bits (76), Expect = 0.12
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469
            G+  EV IE  G + G  + R   +   V+   N   G +I V++T VK    + E V+
Sbjct: 15  AGKEYEVTIEDMG-KGGDGIAR---IDGFVVFVPNAEKGSVINVKVTAVKEKFAFAERVL 70


>1yez_A MM1357; MAR30, structure, autostructure, northeast structural
           genomics, PSI, protein structure initiative; NMR
           {Methanosarcina mazei GO1} SCOP: b.40.4.12
          Length = 68

 Score = 32.0 bits (73), Expect = 0.26
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
            G++ +V I+     +G  + R   ++  V+      +GD +++++  V     +  +V
Sbjct: 13  EGEVYDVTIQDIA-RQGDGIAR---IEGFVIFVPGTKVGDEVRIKVERVLPKFAFASVV 67


>3kws_A Putative sugar isomerase; structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative;
           HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
          Length = 287

 Score = 30.9 bits (69), Expect = 0.55
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 310 HTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGE--TDDDFRATMDLVDKIGYAQAFS 364
           H  +E    +    S    +    ++S      PGE    D++      +  IGY    S
Sbjct: 201 HMTWEETSDMGAFISGGEYLQHVHVASRKRRSMPGEDGDADNYINGFKGLKMIGYNNYVS 260

Query: 365 FKYSPR 370
           F+   +
Sbjct: 261 FECGCQ 266


>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics,
           joint center for structural genomics, JCSG; 2.40A
           {Salmonella typhimurium LT2} SCOP: c.1.15.4
          Length = 272

 Score = 29.9 bits (66), Expect = 1.3
 Identities = 10/103 (9%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD-RILKSMNRRHTAYEYRQIIDRI 322
             +          + +A     VL+   H  +   ++      ++       +   +  +
Sbjct: 145 VSSLRSAVWAQQLIREAGSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGLVH---LSGV 201

Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
              RP  A++ +  +    +        +  ++ +GY   ++F
Sbjct: 202 EDTRPTEALADEQRIMLSEKDVMQNYQQVQRLENMGYRGIYAF 244


>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A
           {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
          Length = 290

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +     PGE    +      + +IGY      
Sbjct: 213 GEANRLPPGEGRLPWDEIFGALKEIGYDGTIVM 245


>2g0w_A LMO2234 protein; 16411704, structural genomics, PSI, protein
           structure initiative, joint center for structural
           genomics, JCSG; HET: MSE PG4; 1.70A {Listeria
           monocytogenes} SCOP: c.1.15.4
          Length = 296

 Score = 29.1 bits (64), Expect = 2.2
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359
           Q+ D   +   ++   S      PGE   D      ++ + G 
Sbjct: 210 QLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEHGV 252


>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM
           barrel protein, protein structure initiative, Zn binding
           domain; 1.80A {Sinorhizobium meliloti}
          Length = 284

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFS---FKYSPRLGTPGSNMLEQVDENVKA 388
           G  G+   D +     ++  G+  A     F        P   ++    E  + 
Sbjct: 221 GMMGDGVIDLKGIRRRIEAAGFHGAQEVEIFSADNWWKRPADEVIATCVERYRN 274


>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
           crystallographic dimer; HET: NAI UGA; 1.80A
           {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
           c.26.3.1 PDB: 1dli_A*
          Length = 402

 Score = 28.8 bits (63), Expect = 2.8
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 30  KSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIR-EKAAEKVYS 82
           KS   ++ +Y+ +  +     Q    VN ++     A++IV N      +    KVYS
Sbjct: 339 KSKDIKIIIYEPMLNKLESEDQ-SVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYS 395


>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
           PDB: 1i6n_A
          Length = 278

 Score = 27.4 bits (60), Expect = 7.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSF 365
            +PG+   D  A +  + +IG++   S 
Sbjct: 218 VWPGQGAIDLDAHLSALKEIGFSDVVSV 245


>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
           with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
           2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
          Length = 769

 Score = 27.3 bits (60), Expect = 8.0
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLL-YSLSEIKGLVRLRY 265
           L+D     +   G+ +  WR  G     E   F  LL   + + + ++  R+
Sbjct: 653 LMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF 704


>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
           iron-sulfur cluster, RNA processing; 1.95A {Escherichia
           coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
          Length = 433

 Score = 27.2 bits (59), Expect = 8.4
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468
             QII V +       G+ V R        L        +  +V +T+ K      ++V
Sbjct: 13  TRQIITVSVNDLDSF-GQGVAR---HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67


>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
           function, nysgxrc target T2186, enolase superfamily;
           2.90A {Listeria innocua CLIP11262} SCOP: c.1.11.2
           d.54.1.1
          Length = 393

 Score = 27.0 bits (59), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 31  SYGCQMNVYDSLRMEDMFFSQGYERV 56
           S G Q NV   L++ + +  QGYERV
Sbjct: 155 SIGLQQNVETLLQLVNQYVDQGYERV 180


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,158,334
Number of extensions: 204111
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 27
Length of query: 469
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 373
Effective length of database: 3,365,806
Effective search space: 1255445638
Effective search space used: 1255445638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)