RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] (469 letters) >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Length = 304 Score = 202 bits (513), Expect = 1e-52 Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 8/296 (2%) Query: 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 A++ I +GCD+ CTFC +P +G SRS+ + E L+ G EI L+ Q+ ++ Sbjct: 6 AYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGI 65 Query: 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 K DLL L+ + G +R HP +++ +I A +LD ++ Y +PVQ Sbjct: 66 D--LYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQH 123 Query: 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 GSD+ILK M R ++ E ++++ IR PD + + IVGFPGET++DF V++I Sbjct: 124 GSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEI 183 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVL 417 + + +F YS GT N+ E+VD + R L E S D VG+ ++ L Sbjct: 184 QFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFL 243 Query: 418 IEKHGKEKGKLVGRS----PWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 +E GKE LVGR+ P + VV IGD ++V I + ++G +++ Sbjct: 244 VE--GKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVIL 297 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Length = 457 Score = 63.3 bits (153), Expect = 1e-10 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 19/202 (9%) Query: 186 CDKFCTFC---VVPYTRGIEISRSLSQVVDE----ARKLIDNGVCEITLLGQNVNAWRGK 238 C K C FC + + + + L + E A V ++ G Sbjct: 62 CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKA 121 Query: 239 GLDGEKCTFSDLLYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQ 296 + L+ L E + PR++ ++ L + VQ Sbjct: 122 QIS-------RLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGF--NRLSMGVQ 172 Query: 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 + + + +NR +++ R + + D I G P +T + F T+ V + Sbjct: 173 DFNKEVQRLVNREQDEEFIFALLNHARE-IGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231 Query: 357 IGYAQAFSFKYSPRLGTPGSNM 378 + + F Y+ + Sbjct: 232 LNPDRLSVFNYAHLPTIFAAQR 253 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 Score = 61.9 bits (149), Expect = 3e-10 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 18/205 (8%) Query: 176 VTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVN 233 + A + C K C +C + ++ ++V+ AR + G I L Sbjct: 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQ----- 107 Query: 234 AWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 GE + S +I ++ + L Sbjct: 108 -------SGEDPYXMPDVIS--DIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLL 158 Query: 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 ++ + + + + + + ++ + + +VG PG+T DD + Sbjct: 159 RHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGA--GSMVGLPGQTIDDLVDDLLF 216 Query: 354 VDKIGYAQAFSFKYSPRLGTPGSNM 378 + + + + P TP +N Sbjct: 217 LKEHDFDMVGIGPFIPHPDTPLANE 241 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.4 bits (89), Expect = 0.004 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 68/200 (34%) Query: 299 SDRILKSMNRRHTAYEYRQ---IIDRIRSVRPDIAI----------SSDFI---VGFPGE 342 +++I K +N T+Y +R ++ + +P + + S I F G Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762 Query: 343 TDDDFRATMDLVD--------KIGYAQAFSFKYS-PR--LGTPGSNMLEQVDENVKAERL 391 + ++ A L D ++ + + + + + PR LG M+ + R+ Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-----INPGRV 1817 Query: 392 LCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNI---- 447 SF+ + ++ ++E+ GK G WL +V N+N+ Sbjct: 1818 ----------AASFSQ----EALQYVVERVGKRTG-------WLVEIV----NYNVENQQ 1852 Query: 448 ----GDIIKVRITDVKISTL 463 GD+ R D + L Sbjct: 1853 YVAAGDL---RALDTVTNVL 1869 Score = 34.5 bits (79), Expect = 0.048 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 21/116 (18%) Query: 14 VSQIVDQCIVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDA-DLIVLNTCHI 72 S ++++ +V + Q+ VYD+ D+ + + + D I+ Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---RVLS-GSISERIVDCIIRLPVKW 490 Query: 73 REKA----AEKVYSF-------LGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEI 117 E A + F LG L + R K+G + V+VAG + ++ Sbjct: 491 -ETTTQFKATHILDFGPGGASGLG---VLTH-RNKDGTGVRVIVAGTLDINPDDDY 541 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 Score = 37.8 bits (87), Expect = 0.006 Identities = 31/207 (14%), Positives = 56/207 (27%), Gaps = 24/207 (11%) Query: 185 GCDKFCTFC--VVPYTRGIEISRSLS--QVVDEARKLIDNGVCEITLLGQNVNAWRGKGL 240 C + C +C Y G+E R + QV++ ARK G + Sbjct: 75 ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMG------------ 122 Query: 241 DGEKCTFSDLLYSLSEIKGLVRLRY--TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 K + L ++ V+ +S+ + + + Y H Sbjct: 123 AAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDY-YNHNL---D 178 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVD-KI 357 + Y+ R + I + S IVG D + L + Sbjct: 179 TSPEFYGNIITTRTYQERLDTLE-KVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPT 237 Query: 358 GYAQAFSFKYSPRLGTPGSNMLEQVDE 384 GTP ++ + Sbjct: 238 PPESVPINMLVKVKGTPLADNDDVDAF 264 >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 269 Score = 37.1 bits (85), Expect = 0.009 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 24/198 (12%) Query: 190 CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ---NVNAWRGKGLDGEKC- 245 + G ++S E R +D + L + + +GLD + C Sbjct: 67 FNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACE 126 Query: 246 -TFSDLLYSLSEI------KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSG 298 TF + ++ LV T + P ++A L + Sbjct: 127 ETFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAV----------GLVKRVN 176 Query: 299 SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGETDDDFRATMDLVD 355 + ++ H + I + + I+S P E + ++ +++ Sbjct: 177 RPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLE 236 Query: 356 KIGYAQAFSFKYSPRLGT 373 +GY +Y+PR T Sbjct: 237 SVGYRGWVGCEYNPRGKT 254 >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Length = 245 Score = 35.7 bits (81), Expect = 0.020 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 30/207 (14%) Query: 159 KFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS-----QVVDE 213 FE VDG R F GC C +C T + ++ + V Sbjct: 8 SFESCGTVDGPGIR---FITFFQ---GCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVT 61 Query: 214 ARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM 273 R ++ +T G D + + +++ + G VR ++ Sbjct: 62 YRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVID--EL 119 Query: 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 + DL + +H ++ N R + ++ + + Sbjct: 120 LEVTDLVMLDLKQMNDEIHQ-------NLVGVSNHRTLEFAKYLANKNVKVWIRYVVV-- 170 Query: 334 DFIVGFPGETD--DDFRATMDLVDKIG 358 PG +D D + +G Sbjct: 171 ------PGWSDDDDSAHRLGEFTRDMG 191 >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} SCOP: c.1.15.5 Length = 260 Score = 35.3 bits (80), Expect = 0.028 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 + + R + V+ I+ P + + ++ L D++GY Sbjct: 184 KVDGNLTHLIRDYAGKYAHVQ----IAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGC 239 Query: 366 KYSPRLGT 373 +Y PR T Sbjct: 240 EYKPRGLT 247 >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} Length = 290 Score = 34.2 bits (77), Expect = 0.070 Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 PG DFR+ + + +IGY + S + P G Sbjct: 235 WAPGCGHFDFRSVFNTLKEIGYNRYVSVECLPLPGGM 271 >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* Length = 309 Score = 33.7 bits (76), Expect = 0.089 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 3/158 (1%) Query: 211 VDEARKLIDNGV-CEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 + + N +I +G ++++ D + I G+ Sbjct: 106 KAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGI 165 Query: 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 + + L+ + G + + ++ H E D IR+ P + Sbjct: 166 NLCIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKVMLDTFHMNIEEDSFGDAIRTAGPLL 225 Query: 330 AIS--SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 + PG+ + + I Y A Sbjct: 226 GHFHTGESNRRVPGKGRMPWHEIGLALRDINYTGAVIM 263 >1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12 Length = 70 Score = 33.1 bits (76), Expect = 0.12 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 G+ EV IE G + G + R + V+ N G +I V++T VK + E V+ Sbjct: 15 AGKEYEVTIEDMG-KGGDGIAR---IDGFVVFVPNAEKGSVINVKVTAVKEKFAFAERVL 70 >1yez_A MM1357; MAR30, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Methanosarcina mazei GO1} SCOP: b.40.4.12 Length = 68 Score = 32.0 bits (73), Expect = 0.26 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 G++ +V I+ +G + R ++ V+ +GD +++++ V + +V Sbjct: 13 EGEVYDVTIQDIA-RQGDGIAR---IEGFVIFVPGTKVGDEVRIKVERVLPKFAFASVV 67 >3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Length = 287 Score = 30.9 bits (69), Expect = 0.55 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 310 HTAYEYRQIIDRIRSVRPDIA---ISSDFIVGFPGE--TDDDFRATMDLVDKIGYAQAFS 364 H +E + S + ++S PGE D++ + IGY S Sbjct: 201 HMTWEETSDMGAFISGGEYLQHVHVASRKRRSMPGEDGDADNYINGFKGLKMIGYNNYVS 260 Query: 365 FKYSPR 370 F+ + Sbjct: 261 FECGCQ 266 >2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 Length = 272 Score = 29.9 bits (66), Expect = 1.3 Identities = 10/103 (9%), Positives = 33/103 (32%), Gaps = 4/103 (3%) Query: 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSD-RILKSMNRRHTAYEYRQIIDRI 322 + + +A VL+ H + ++ ++ + + + Sbjct: 145 VSSLRSAVWAQQLIREAGSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGLVH---LSGV 201 Query: 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 RP A++ + + + + ++ +GY ++F Sbjct: 202 EDTRPTEALADEQRIMLSEKDVMQNYQQVQRLENMGYRGIYAF 244 >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* Length = 290 Score = 29.3 bits (64), Expect = 2.1 Identities = 6/33 (18%), Positives = 10/33 (30%) Query: 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 + PGE + + +IGY Sbjct: 213 GEANRLPPGEGRLPWDEIFGALKEIGYDGTIVM 245 >2g0w_A LMO2234 protein; 16411704, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 Length = 296 Score = 29.1 bits (64), Expect = 2.2 Identities = 8/43 (18%), Positives = 15/43 (34%) Query: 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY 359 Q+ D + ++ S PGE D ++ + G Sbjct: 210 QLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEHGV 252 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Length = 284 Score = 28.9 bits (63), Expect = 2.7 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%) Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFS---FKYSPRLGTPGSNMLEQVDENVKA 388 G G+ D + ++ G+ A F P ++ E + Sbjct: 221 GMMGDGVIDLKGIRRRIEAAGFHGAQEVEIFSADNWWKRPADEVIATCVERYRN 274 >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 Score = 28.8 bits (63), Expect = 2.8 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMD----DADLIVLNTCHIR-EKAAEKVYS 82 KS ++ +Y+ + + Q VN ++ A++IV N + KVYS Sbjct: 339 KSKDIKIIIYEPMLNKLESEDQ-SVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYS 395 >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Length = 278 Score = 27.4 bits (60), Expect = 7.3 Identities = 7/28 (25%), Positives = 14/28 (50%) Query: 338 GFPGETDDDFRATMDLVDKIGYAQAFSF 365 +PG+ D A + + +IG++ S Sbjct: 218 VWPGQGAIDLDAHLSALKEIGFSDVVSV 245 >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Score = 27.3 bits (60), Expect = 8.0 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 217 LIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLL-YSLSEIKGLVRLRY 265 L+D + G+ + WR G E F LL + + + ++ R+ Sbjct: 653 LMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF 704 >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 Score = 27.2 bits (59), Expect = 8.4 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 4/59 (6%) Query: 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 QII V + G+ V R L + +V +T+ K ++V Sbjct: 13 TRQIITVSVNDLDSF-GQGVAR---HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, enolase superfamily; 2.90A {Listeria innocua CLIP11262} SCOP: c.1.11.2 d.54.1.1 Length = 393 Score = 27.0 bits (59), Expect = 8.7 Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 31 SYGCQMNVYDSLRMEDMFFSQGYERV 56 S G Q NV L++ + + QGYERV Sbjct: 155 SIGLQQNVETLLQLVNQYVDQGYERV 180 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.409 Gapped Lambda K H 0.267 0.0484 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,158,334 Number of extensions: 204111 Number of successful extensions: 603 Number of sequences better than 10.0: 1 Number of HSP's gapped: 597 Number of HSP's successfully gapped: 27 Length of query: 469 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 373 Effective length of database: 3,365,806 Effective search space: 1255445638 Effective search space used: 1255445638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.7 bits)