HHsearch alignment for GI: 255764473 and conserved domain: COG0078

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=659.95  Aligned_cols=302  Identities=52%  Similarity=0.812  Sum_probs=284.7

Q ss_pred             CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r    2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM   81 (306)
Q Consensus         2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s   81 (306)
T Consensus         3 ~~~~rhfL~l~D~t~~El~~ll~~A~~lK~~~~~~~~~~~-~gk~laliFeK~STRTR~SFe~a~~qlGg~~~~l~~~~~   81 (310)
T COG0078           3 NLAGRHFLSLLDFTPEELEALLDLAAELKAAKKAGKELKL-KGKNLALIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDS   81 (310)
T ss_pred             CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             6643330405209999999999999999874515874256-896599996489840454499999976896487088755


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             01232107999997530010111210132006776301244124043332024678765576642001336773046104
Q gi|255764473|r   82 QLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGD  161 (306)
Q Consensus        82 s~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd  161 (306)
T Consensus        82 Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~v~~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGD  161 (310)
T COG0078          82 QLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGD  161 (310)
T ss_pred             CCCCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             26789967889999985502577853548999999972799667254566681899999999999638666857999767


Q ss_pred             CCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHC----CCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHH
Q ss_conf             555543101001233125765200001321000024320----1332221366466306873322210000002201333
Q gi|255764473|r  162 GNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARN----QGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE  237 (306)
Q Consensus       162 ~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~----~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~  237 (306)
T Consensus       162 gNNv~~Sl~~~~a~~G~dv~ia~P~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~  241 (310)
T COG0078         162 GNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEE  241 (310)
T ss_pred             CCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf             63699999999998298689978986786989999999999853984898639889857899998367656762234078


Q ss_pred             -H-HCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             -1-001112336889962898729925999874873576796799710686877559999999999625
Q gi|255764473|r  238 -E-HVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG  304 (306)
Q Consensus       238 -~-~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG  304 (306)
T Consensus       242 ~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRlH~qKAvl~~~l~  310 (310)
T COG0078         242 RRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLHTQKAVLAALLG  310 (310)
T ss_pred             HHHHHCCCCEECHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             888537785357999950379828974788777871579895787514730632108999999999639