Query gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 306
No_of_seqs 122 out of 4501
Neff 7.3
Searched_HMMs 39220
Date Sun May 29 16:39:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764473.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00658 orni_carb_tr ornithi 100.0 0 0 760.6 18.5 299 6-304 1-341 (341)
2 PRK00779 ornithine carbamoyltr 100.0 0 0 687.7 22.8 302 4-305 4-307 (308)
3 PRK02255 putrescine carbamoylt 100.0 0 0 681.7 22.9 303 2-304 1-313 (341)
4 PRK02102 ornithine carbamoyltr 100.0 0 0 673.6 22.6 301 5-305 7-331 (331)
5 PRK03515 ornithine carbamoyltr 100.0 0 0 663.7 22.7 302 4-305 5-334 (334)
6 PRK12562 ornithine carbamoyltr 100.0 0 0 662.1 22.7 302 4-305 5-334 (334)
7 PRK04284 ornithine carbamoyltr 100.0 0 0 658.8 22.6 301 5-305 6-332 (332)
8 PRK08192 aspartate carbamoyltr 100.0 0 0 656.7 23.6 304 2-305 2-318 (338)
9 COG0078 ArgF Ornithine carbamo 100.0 0 0 660.0 20.8 302 2-304 3-310 (310)
10 PRK00856 pyrB aspartate carbam 100.0 0 0 654.6 22.4 293 4-305 5-303 (304)
11 PRK01713 ornithine carbamoyltr 100.0 0 0 651.2 23.0 299 5-303 7-333 (334)
12 TIGR00670 asp_carb_tr aspartat 100.0 0 0 656.0 18.2 299 6-304 1-336 (336)
13 TIGR03316 ygeW probable carbam 100.0 0 0 638.4 22.1 299 4-302 2-357 (357)
14 PRK13814 pyrB aspartate carbam 100.0 0 0 633.0 22.6 297 1-304 1-304 (310)
15 PRK04523 N-acetylornithine car 100.0 0 0 619.2 21.5 297 2-305 1-335 (335)
16 COG0540 PyrB Aspartate carbamo 100.0 0 0 617.2 20.1 302 2-305 4-313 (316)
17 PRK07200 aspartate/ornithine c 100.0 0 0 599.8 20.5 301 4-304 19-376 (395)
18 PRK11891 aspartate carbamoyltr 100.0 0 0 586.9 21.4 300 5-305 88-400 (430)
19 KOG1504 consensus 100.0 0 0 536.6 12.4 301 3-304 37-345 (346)
20 PRK13376 pyrB bifunctional asp 100.0 0 0 402.8 17.1 302 5-306 7-335 (524)
21 pfam02729 OTCace_N Aspartate/o 100.0 0 0 340.0 11.5 140 6-147 1-140 (140)
22 pfam00185 OTCace Aspartate/orn 100.0 8.9E-41 2.8E-45 287.4 8.6 148 152-302 1-155 (155)
23 PRK00257 erythronate-4-phospha 97.6 0.00051 1.3E-08 46.6 7.9 140 115-277 75-217 (379)
24 PRK10792 bifunctional 5,10-met 96.7 0.034 8.8E-07 34.6 10.4 187 8-223 5-208 (288)
25 COG0111 SerA Phosphoglycerate 96.6 0.011 2.9E-07 37.7 7.4 140 114-276 82-242 (324)
26 PRK08605 D-lactate dehydrogena 96.5 0.074 1.9E-06 32.4 10.9 129 114-264 85-236 (332)
27 PRK13243 glyoxylate reductase; 96.5 0.02 5.1E-07 36.1 8.0 140 111-274 80-247 (333)
28 PRK06932 glycerate dehydrogena 96.4 0.025 6.3E-07 35.6 7.7 146 94-264 58-233 (314)
29 PRK11790 D-3-phosphoglycerate 96.2 0.079 2E-06 32.3 9.6 151 99-275 53-247 (409)
30 PRK08410 2-hydroxyacid dehydro 96.1 0.033 8.3E-07 34.8 7.2 130 111-264 76-232 (311)
31 PRK07574 formate dehydrogenase 96.0 0.048 1.2E-06 33.7 7.8 143 111-275 127-292 (385)
32 PRK13581 D-3-phosphoglycerate 95.7 0.08 2E-06 32.2 7.8 137 114-274 78-235 (524)
33 PRK06487 glycerate dehydrogena 95.5 0.086 2.2E-06 32.0 7.3 127 112-264 80-233 (317)
34 PTZ00075 S-adenosyl-L-homocyst 95.4 0.25 6.5E-06 28.9 14.0 242 6-279 8-354 (476)
35 PRK12480 D-lactate dehydrogena 95.0 0.33 8.3E-06 28.2 9.1 184 50-270 30-237 (330)
36 pfam02826 2-Hacid_dh_C D-isome 94.8 0.043 1.1E-06 34.0 4.2 102 150-276 33-134 (176)
37 PRK08306 dipicolinate synthase 94.3 0.49 1.2E-05 27.1 8.9 199 57-265 44-266 (296)
38 PRK06436 glycerate dehydrogena 93.9 0.4 1E-05 27.7 7.4 61 150-223 119-179 (303)
39 TIGR02853 spore_dpaA dipicolin 93.6 0.36 9.1E-06 27.9 6.8 193 47-261 28-238 (288)
40 COG1052 LdhA Lactate dehydroge 91.7 0.33 8.4E-06 28.2 4.5 103 150-276 143-245 (324)
41 pfam05221 AdoHcyase S-adenosyl 91.7 1.2 3E-05 24.6 13.5 241 9-280 8-311 (430)
42 pfam01488 Shikimate_DH Shikima 91.6 0.19 4.8E-06 29.8 3.1 116 145-283 4-124 (134)
43 cd01080 NAD_bind_m-THF_DH_Cycl 91.0 0.27 6.9E-06 28.8 3.5 73 130-223 21-93 (168)
44 COG0190 FolD 5,10-methylene-te 90.8 1.4 3.6E-05 24.1 11.0 185 9-223 3-205 (283)
45 PRK00045 hemA glutamyl-tRNA re 90.4 0.28 7E-06 28.7 3.1 115 144-281 173-294 (429)
46 TIGR00407 proA gamma-glutamyl 90.3 0.15 3.7E-06 30.5 1.6 46 86-133 178-223 (415)
47 pfam02882 THF_DHG_CYH_C Tetrah 90.0 0.36 9.1E-06 27.9 3.4 73 130-223 13-85 (159)
48 PRK12862 malic enzyme; Reviewe 89.8 1.7 4.3E-05 23.5 7.3 185 86-292 121-326 (761)
49 PRK07232 malic enzyme; Reviewe 87.6 2.4 6.1E-05 22.6 8.3 186 85-292 114-320 (753)
50 cd05296 GH4_P_beta_glucosidase 87.2 0.41 1.1E-05 27.5 2.2 136 9-146 32-184 (419)
51 PRK07531 bifunctional 3-hydrox 87.1 0.46 1.2E-05 27.2 2.4 29 91-119 95-125 (489)
52 cd00401 AdoHcyase S-adenosyl-L 86.9 2.6 6.7E-05 22.3 14.5 242 9-281 1-304 (413)
53 cd05197 GH4_glycoside_hydrolas 86.8 0.23 5.8E-06 29.2 0.7 135 9-145 32-183 (425)
54 cd01336 MDH_cytoplasmic_cytoso 86.6 0.88 2.2E-05 25.4 3.6 61 68-129 76-154 (325)
55 PRK10355 xylF D-xylose transpo 86.4 2.2 5.5E-05 22.8 5.5 82 44-128 25-113 (330)
56 cd05297 GH4_alpha_glucosidase_ 85.9 0.33 8.4E-06 28.2 1.1 152 9-160 32-202 (423)
57 PRK05442 malate dehydrogenase; 85.8 1.1 2.9E-05 24.7 3.8 24 69-93 79-102 (325)
58 PRK05476 S-adenosyl-L-homocyst 85.6 3 7.7E-05 21.9 15.6 240 9-279 10-308 (427)
59 cd05298 GH4_GlvA_pagL_like Gly 85.4 0.35 8.8E-06 28.0 1.0 136 8-145 31-183 (437)
60 COG0014 ProA Gamma-glutamyl ph 85.4 0.59 1.5E-05 26.5 2.2 47 86-134 184-230 (417)
61 PRK01438 murD UDP-N-acetylmura 85.0 0.62 1.6E-05 26.4 2.2 36 41-79 11-46 (481)
62 PRK12861 malic enzyme; Reviewe 84.5 3.4 8.7E-05 21.5 6.4 185 86-292 116-321 (762)
63 pfam02056 Glyco_hydro_4 Family 84.5 0.4 1E-05 27.7 1.0 79 203-285 59-141 (183)
64 cd01338 MDH_choloroplast_like 84.4 1.4 3.5E-05 24.1 3.7 24 69-93 77-100 (322)
65 cd05212 NAD_bind_m-THF_DH_Cycl 84.1 1.4 3.6E-05 24.0 3.7 63 141-224 15-78 (140)
66 cd06391 PBP1_iGluR_delta_2 N-t 83.8 3.6 9.3E-05 21.3 8.0 102 46-147 1-138 (400)
67 TIGR02012 tigrfam_recA protein 83.3 3.7 9.4E-05 21.3 5.5 101 43-151 54-178 (322)
68 pfam06506 PrpR_N Propionate ca 83.3 3.1 8E-05 21.8 5.2 101 95-207 28-128 (169)
69 PRK07631 amidophosphoribosyltr 83.1 2.8 7.1E-05 22.1 4.9 133 49-191 235-392 (475)
70 cd06313 PBP1_ABC_sugar_binding 82.9 1.6 4E-05 23.7 3.5 69 57-128 16-87 (272)
71 cd01981 Pchlide_reductase_B Pc 82.5 3.8 9.7E-05 21.2 5.4 20 87-106 71-92 (430)
72 pfam00670 AdoHcyase_NAD S-aden 81.8 4.3 0.00011 20.9 6.4 117 136-280 7-124 (162)
73 cd06302 PBP1_LsrB_Quorum_Sensi 81.8 2 5.2E-05 23.0 3.7 70 58-129 17-89 (298)
74 PRK06718 precorrin-2 dehydroge 81.7 1 2.6E-05 24.9 2.2 71 148-223 5-76 (202)
75 COG1486 CelF Alpha-galactosida 81.3 1.7 4.3E-05 23.5 3.2 24 10-33 36-59 (442)
76 cd04510 consensus 81.2 1.5 3.8E-05 23.9 2.9 126 87-221 105-257 (334)
77 cd01540 PBP1_arabinose_binding 80.6 2.8 7.1E-05 22.1 4.1 65 59-127 18-85 (289)
78 PRK06781 amidophosphoribosyltr 80.6 3.4 8.8E-05 21.5 4.6 131 51-191 237-392 (471)
79 PRK01710 murD UDP-N-acetylmura 80.3 1.1 2.8E-05 24.8 1.9 37 40-79 10-46 (458)
80 cd06316 PBP1_ABC_sugar_binding 80.2 2.1 5.3E-05 22.9 3.4 68 58-127 17-87 (294)
81 PRK06388 amidophosphoribosyltr 80.0 3.2 8.1E-05 21.7 4.2 131 51-191 245-400 (474)
82 PRK09246 amidophosphoribosyltr 79.9 3.5 9E-05 21.4 4.5 89 103-191 296-402 (503)
83 cd06305 PBP1_methylthioribose_ 79.9 2.6 6.7E-05 22.3 3.8 71 57-130 16-89 (273)
84 PRK05225 ketol-acid reductoiso 79.7 1.6 4E-05 23.8 2.6 13 40-52 33-45 (489)
85 KOG0069 consensus 79.6 3.4 8.8E-05 21.5 4.3 143 109-275 96-261 (336)
86 COG0059 IlvC Ketol-acid reduct 79.3 1.6 4.1E-05 23.7 2.5 32 40-74 14-45 (338)
87 cd05295 MDH_like Malate dehydr 78.1 2.4 6.1E-05 22.5 3.1 123 148-270 118-257 (452)
88 PRK06129 3-hydroxyacyl-CoA deh 78.1 1.3 3.4E-05 24.2 1.8 14 238-251 245-258 (308)
89 pfam07991 IlvN Acetohydroxy ac 77.9 1.8 4.6E-05 23.3 2.5 66 151-224 2-67 (165)
90 cd05213 NAD_bind_Glutamyl_tRNA 77.6 0.89 2.3E-05 25.4 0.8 119 144-285 169-291 (311)
91 COG0499 SAM1 S-adenosylhomocys 77.6 5.9 0.00015 20.0 13.8 239 9-278 10-308 (420)
92 cd02812 PcrB_like PcrB_like pr 77.3 6 0.00015 19.9 5.5 164 61-227 16-207 (219)
93 cd06312 PBP1_ABC_sugar_binding 77.1 3.3 8.3E-05 21.7 3.6 75 51-130 14-91 (271)
94 cd06382 PBP1_iGluR_Kainate N-t 76.9 6.1 0.00016 19.9 8.6 111 47-161 2-139 (327)
95 cd00704 MDH Malate dehydrogena 76.0 3.2 8.1E-05 21.7 3.3 23 69-92 75-97 (323)
96 PRK06719 precorrin-2 dehydroge 76.0 1.5 3.9E-05 23.8 1.6 126 144-284 4-131 (157)
97 COG1004 Ugd Predicted UDP-gluc 75.9 4.7 0.00012 20.6 4.1 79 144-230 302-390 (414)
98 PRK07847 amidophosphoribosyltr 75.3 3.8 9.6E-05 21.2 3.5 128 54-191 234-386 (489)
99 PRK05793 amidophosphoribosyltr 75.1 5.9 0.00015 20.0 4.5 130 52-191 246-400 (472)
100 TIGR01723 hmd_TIGR coenzyme F4 75.1 3.1 8E-05 21.8 3.1 91 150-263 93-184 (359)
101 cd01538 PBP1_ABC_xylose_bindin 75.0 4.2 0.00011 20.9 3.7 68 57-127 16-86 (288)
102 cd01965 Nitrogenase_MoFe_beta_ 73.8 7.3 0.00019 19.4 5.3 115 66-183 178-328 (428)
103 cd06307 PBP1_uncharacterized_s 73.6 5.7 0.00014 20.1 4.1 69 59-127 18-89 (275)
104 PRK05562 precorrin-2 dehydroge 73.1 2.5 6.3E-05 22.4 2.1 68 152-223 23-90 (222)
105 COG1648 CysG Siroheme synthase 73.0 2.3 5.8E-05 22.7 1.9 71 148-223 7-78 (210)
106 TIGR00575 dnlj DNA ligase, NAD 73.0 7.7 0.0002 19.2 6.4 53 56-109 239-299 (706)
107 PRK05479 ketol-acid reductoiso 73.0 2.7 6.9E-05 22.2 2.3 33 39-74 12-44 (336)
108 cd06315 PBP1_ABC_sugar_binding 72.9 3.9 9.9E-05 21.2 3.1 66 59-127 19-87 (280)
109 cd06319 PBP1_ABC_sugar_binding 72.8 4 0.0001 21.0 3.1 68 58-128 17-87 (277)
110 cd06318 PBP1_ABC_sugar_binding 72.6 4.3 0.00011 20.9 3.3 70 58-130 17-89 (282)
111 PRK07349 amidophosphoribosyltr 72.2 8 0.0002 19.1 5.2 117 74-191 275-416 (495)
112 PRK07502 cyclohexadienyl dehyd 71.9 2 5.2E-05 23.0 1.5 77 60-137 19-109 (307)
113 cd01078 NAD_bind_H4MPT_DH NADP 71.8 2.5 6.4E-05 22.4 1.9 36 150-185 25-60 (194)
114 cd06317 PBP1_ABC_sugar_binding 71.2 5.1 0.00013 20.4 3.4 68 59-129 19-89 (275)
115 PRK09558 ushA bifunctional UDP 70.8 2.8 7E-05 22.1 1.9 82 70-161 75-171 (551)
116 pfam03807 F420_oxidored NADP o 70.4 2 5.1E-05 23.0 1.2 65 155-224 1-65 (93)
117 PRK13403 ketol-acid reductoiso 70.3 3 7.7E-05 21.9 2.0 16 40-55 12-27 (335)
118 PRK09260 3-hydroxybutyryl-CoA 70.2 3.4 8.7E-05 21.5 2.3 17 11-27 30-46 (289)
119 COG0373 HemA Glutamyl-tRNA red 69.6 5.9 0.00015 20.0 3.4 106 145-271 170-280 (414)
120 PRK08293 3-hydroxybutyryl-CoA 69.4 3.2 8.2E-05 21.7 2.0 19 100-118 112-130 (288)
121 TIGR01469 cobA_cysG_Cterm urop 69.3 7.1 0.00018 19.4 3.8 13 213-225 22-34 (242)
122 PRK10936 periplasmic sensory p 69.2 9.2 0.00024 18.7 4.4 115 45-161 46-178 (340)
123 PRK09123 amidophosphoribosyltr 68.0 9.7 0.00025 18.5 4.3 117 74-191 254-395 (480)
124 PRK13940 glutamyl-tRNA reducta 67.5 7.2 0.00018 19.4 3.5 106 144-271 172-279 (414)
125 cd01079 NAD_bind_m-THF_DH NAD 67.1 8.1 0.00021 19.1 3.7 92 131-224 31-133 (197)
126 PRK00961 H(2)-dependent methyl 66.8 3.9 9.9E-05 21.1 2.0 25 204-230 128-152 (345)
127 pfam02423 OCD_Mu_crystall Orni 66.8 3.5 8.9E-05 21.5 1.8 77 148-226 124-202 (312)
128 cd06310 PBP1_ABC_sugar_binding 66.8 10 0.00026 18.4 4.2 70 58-129 17-90 (273)
129 pfam01262 AlaDh_PNT_C Alanine 66.6 4.1 0.00011 21.0 2.1 103 150-269 17-125 (150)
130 cd06306 PBP1_TorT-like TorT-li 66.5 10 0.00026 18.4 4.1 85 58-144 17-107 (268)
131 PRK08655 prephenate dehydrogen 65.4 4.8 0.00012 20.6 2.2 91 99-189 58-167 (441)
132 PRK09701 D-allose transporter 65.2 11 0.00028 18.2 4.2 69 57-128 41-114 (311)
133 cd06309 PBP1_YtfQ_like Peripla 65.1 7.9 0.0002 19.1 3.3 67 59-128 18-87 (273)
134 TIGR02371 ala_DH_arch alanine 63.6 5.1 0.00013 20.4 2.1 113 152-268 128-259 (327)
135 pfam01861 DUF43 Protein of unk 62.6 12 0.00032 17.9 5.0 51 131-184 24-74 (243)
136 PRK08525 amidophosphoribosyltr 62.4 12 0.00032 17.8 5.0 116 74-191 243-384 (445)
137 COG0565 LasT rRNA methylase [T 62.0 8.9 0.00023 18.8 3.1 20 206-225 61-80 (242)
138 TIGR00644 recJ single-stranded 61.6 4.6 0.00012 20.7 1.6 96 131-226 30-147 (705)
139 cd06314 PBP1_tmGBP Periplasmic 61.3 12 0.00029 18.1 3.6 71 57-130 15-88 (271)
140 TIGR01035 hemA glutamyl-tRNA r 61.1 6.3 0.00016 19.8 2.2 114 145-281 175-307 (436)
141 cd06311 PBP1_ABC_sugar_binding 60.9 11 0.00029 18.1 3.5 68 59-129 18-93 (274)
142 PRK07272 amidophosphoribosyltr 60.7 13 0.00034 17.6 4.3 130 52-191 240-394 (484)
143 PRK06545 prephenate dehydrogen 60.5 6 0.00015 19.9 2.0 19 99-117 60-78 (357)
144 COG1609 PurR Transcriptional r 60.1 14 0.00035 17.6 6.1 161 13-179 26-207 (333)
145 COG2227 UbiG 2-polyprenyl-3-me 59.5 14 0.00036 17.5 3.9 94 61-172 72-172 (243)
146 cd01545 PBP1_SalR Ligand-bindi 59.5 14 0.00035 17.6 3.7 116 59-178 18-149 (270)
147 TIGR03026 NDP-sugDHase nucleot 59.3 9.9 0.00025 18.5 3.0 73 146-228 306-388 (411)
148 PRK06141 ornithine cyclodeamin 58.5 4.8 0.00012 20.6 1.2 72 152-225 124-197 (313)
149 PRK09424 pntA NAD(P) transhydr 58.4 15 0.00037 17.4 3.7 10 215-224 246-255 (510)
150 pfam01210 NAD_Gly3P_dh_N NAD-d 57.9 7.1 0.00018 19.4 2.0 20 204-223 57-76 (159)
151 PRK08291 ornithine cyclodeamin 57.9 5.7 0.00014 20.1 1.5 74 150-225 129-205 (330)
152 cd01979 Pchlide_reductase_N Pc 57.5 15 0.00038 17.3 3.7 65 117-181 114-184 (396)
153 pfam00793 DAHP_synth_1 DAHP sy 57.4 5.1 0.00013 20.4 1.2 103 12-125 23-134 (271)
154 PRK10653 D-ribose transporter 55.9 16 0.00041 17.1 5.7 83 42-128 24-114 (295)
155 PRK06823 ornithine cyclodeamin 55.7 6 0.00015 19.9 1.4 72 152-225 127-200 (315)
156 PRK05134 3-demethylubiquinone- 55.2 16 0.00042 17.1 3.5 111 40-172 45-162 (233)
157 cd06300 PBP1_ABC_sugar_binding 54.7 17 0.00043 17.0 3.6 82 59-143 18-109 (272)
158 cd06324 PBP1_ABC_sugar_binding 54.5 16 0.00042 17.1 3.4 67 59-129 19-90 (305)
159 PRK00048 dihydrodipicolinate r 54.4 11 0.00027 18.3 2.4 68 99-174 69-141 (265)
160 cd01065 NAD_bind_Shikimate_DH 53.9 8.2 0.00021 19.0 1.8 80 142-224 8-88 (155)
161 PRK13656 trans-2-enoyl-CoA red 53.7 17 0.00044 16.9 3.7 62 45-106 68-138 (400)
162 PRK06701 short chain dehydroge 53.3 5.6 0.00014 20.1 0.9 93 37-136 38-141 (289)
163 PRK06130 3-hydroxybutyryl-CoA 52.3 8.5 0.00022 18.9 1.7 18 101-118 107-124 (310)
164 PRK07589 ornithine cyclodeamin 52.1 7 0.00018 19.5 1.2 72 152-225 128-201 (346)
165 PRK07634 pyrroline-5-carboxyla 51.8 19 0.00047 16.7 4.0 31 99-129 66-100 (245)
166 COG4074 Mth H2-forming N5,N10- 51.6 11 0.00028 18.2 2.1 25 204-230 126-150 (343)
167 TIGR01759 MalateDH-SF1 malate 51.5 16 0.00041 17.1 3.0 119 154-274 4-140 (329)
168 PRK09117 consensus 51.2 9.6 0.00024 18.6 1.8 15 11-25 30-44 (282)
169 cd06322 PBP1_ABC_sugar_binding 51.0 18 0.00047 16.8 3.2 102 58-162 17-130 (267)
170 PRK06035 3-hydroxyacyl-CoA deh 51.0 12 0.00032 17.9 2.3 22 100-121 113-134 (291)
171 pfam00056 Ldh_1_N lactate/mala 50.7 13 0.00033 17.7 2.4 128 155-285 2-140 (142)
172 cd01976 Nitrogenase_MoFe_alpha 50.0 20 0.0005 16.5 4.9 37 148-185 295-331 (421)
173 cd01537 PBP1_Repressors_Sugar_ 49.2 20 0.00052 16.4 5.3 80 46-129 1-87 (264)
174 PRK09519 recA recombinase A; R 49.2 20 0.00052 16.4 5.1 99 43-151 59-183 (790)
175 KOG2711 consensus 49.2 14 0.00036 17.5 2.4 44 100-143 106-159 (372)
176 cd06325 PBP1_ABC_uncharacteriz 48.7 21 0.00053 16.4 6.0 72 53-126 10-86 (281)
177 TIGR02685 pter_reduc_Leis pter 48.3 12 0.00031 18.0 1.9 130 80-223 122-258 (283)
178 KOG0068 consensus 48.2 21 0.00054 16.3 4.5 151 100-274 71-243 (406)
179 PRK00197 proA gamma-glutamyl p 48.0 21 0.00054 16.3 4.6 37 96-133 193-229 (416)
180 PRK07417 arogenate dehydrogena 47.7 9.7 0.00025 18.5 1.4 18 100-117 59-76 (280)
181 TIGR01283 nifE nitrogenase MoF 47.6 22 0.00055 16.3 4.5 112 111-226 269-416 (470)
182 KOG2431 consensus 47.6 5.3 0.00013 20.3 0.0 37 115-151 210-253 (546)
183 cd05291 HicDH_like L-2-hydroxy 47.4 22 0.00055 16.3 3.7 22 108-129 119-143 (306)
184 PRK05808 3-hydroxybutyryl-CoA 47.2 12 0.00031 17.9 1.8 30 91-120 99-130 (282)
185 TIGR02992 ectoine_eutC ectoine 47.2 9.7 0.00025 18.5 1.3 30 196-225 173-202 (326)
186 cd06282 PBP1_GntR_like_2 Ligan 47.0 20 0.00051 16.5 2.9 101 56-161 15-124 (266)
187 cd01575 PBP1_GntR Ligand-bindi 46.8 22 0.00057 16.2 3.5 101 58-162 17-125 (268)
188 PRK08618 ornithine cyclodeamin 46.5 11 0.00029 18.2 1.5 72 152-225 126-200 (325)
189 PRK08341 amidophosphoribosyltr 46.5 21 0.00053 16.4 2.9 114 74-191 239-378 (442)
190 PRK06608 threonine dehydratase 46.3 17 0.00043 17.0 2.4 38 50-87 76-113 (330)
191 PRK07660 consensus 46.1 15 0.00039 17.3 2.2 13 11-23 31-43 (283)
192 COG0034 PurF Glutamine phospho 45.0 19 0.00049 16.6 2.5 131 51-191 237-392 (470)
193 pfam02639 DUF188 Uncharacteriz 43.1 21 0.00054 16.3 2.5 21 171-191 4-24 (130)
194 pfam00532 Peripla_BP_1 family. 43.1 25 0.00064 15.8 3.2 69 57-129 18-89 (281)
195 KOG0953 consensus 42.8 14 0.00035 17.6 1.5 12 53-64 108-119 (700)
196 TIGR01304 IMP_DH_rel_2 IMP deh 42.8 25 0.00065 15.8 3.0 120 90-225 146-290 (376)
197 pfam02737 3HCDH_N 3-hydroxyacy 42.6 15 0.00038 17.3 1.7 67 155-223 1-84 (180)
198 cd07079 ALDH_F18-19_ProA-GPR G 42.2 26 0.00066 15.8 5.1 114 13-132 65-223 (406)
199 TIGR00169 leuB 3-isopropylmala 41.9 21 0.00053 16.4 2.3 45 58-105 174-223 (370)
200 PRK12825 fabG 3-ketoacyl-(acyl 41.8 11 0.00029 18.1 1.0 20 167-186 169-188 (250)
201 PRK11199 tyrA bifunctional cho 41.7 20 0.00052 16.5 2.3 166 12-189 64-246 (374)
202 PRK06407 ornithine cyclodeamin 41.6 12 0.0003 18.0 1.0 72 153-226 118-192 (302)
203 TIGR00337 PyrG CTP synthase; I 41.4 23 0.00059 16.1 2.5 95 86-181 201-343 (571)
204 cd01539 PBP1_GGBP Periplasmic 41.2 27 0.00069 15.7 4.4 67 59-127 18-88 (303)
205 PRK12779 putative bifunctional 41.1 26 0.00066 15.8 2.7 187 42-233 304-533 (944)
206 cd06380 PBP1_iGluR_AMPA N-term 41.0 27 0.00069 15.6 8.3 128 47-179 2-155 (382)
207 PRK07530 3-hydroxybutyryl-CoA 41.0 17 0.00044 16.9 1.8 30 91-120 100-131 (292)
208 PRK09354 recA recombinase A; P 40.9 27 0.00069 15.6 5.3 64 43-106 59-145 (350)
209 PRK09545 znuA high-affinity zi 40.8 27 0.0007 15.6 5.1 11 169-179 210-220 (308)
210 PRK10423 transcriptional repre 40.3 28 0.00071 15.6 6.9 146 13-162 24-183 (327)
211 PRK12549 shikimate 5-dehydroge 40.2 28 0.00071 15.6 6.1 167 55-223 17-198 (284)
212 COG0324 MiaA tRNA delta(2)-iso 40.2 28 0.00071 15.6 4.5 89 47-143 6-113 (308)
213 cd06320 PBP1_allose_binding Pe 40.1 28 0.00071 15.5 4.1 70 59-130 18-91 (275)
214 PRK10116 universal stress prot 39.5 29 0.00073 15.5 6.2 113 2-164 1-113 (142)
215 TIGR00633 xth exodeoxyribonucl 39.5 16 0.00042 17.0 1.5 51 117-170 106-169 (279)
216 PRK09982 universal stress prot 39.4 29 0.00073 15.5 4.3 29 2-32 1-29 (142)
217 pfam01113 DapB_N Dihydrodipico 38.8 25 0.00065 15.8 2.4 67 154-222 1-70 (122)
218 KOG1370 consensus 38.5 30 0.00075 15.4 5.6 242 9-280 13-315 (434)
219 cd06275 PBP1_PurR Ligand-bindi 38.4 30 0.00076 15.4 3.4 100 59-162 18-126 (269)
220 TIGR00185 rRNA_methyl_2 RNA me 38.1 19 0.00049 16.6 1.7 42 156-198 5-47 (161)
221 pfam05368 NmrA NmrA-like famil 37.9 11 0.00029 18.1 0.5 29 67-104 41-69 (232)
222 PRK11070 ssDNA exonuclease Rec 37.6 17 0.00043 17.0 1.3 11 97-107 148-158 (574)
223 cd00650 LDH_MDH_like NAD-depen 37.4 19 0.00049 16.6 1.6 40 90-129 100-145 (263)
224 PRK00258 aroE shikimate 5-dehy 37.4 31 0.00079 15.3 6.2 165 50-224 10-191 (275)
225 PRK03806 murD UDP-N-acetylmura 37.2 24 0.00061 16.0 2.1 35 42-79 4-38 (438)
226 TIGR01692 HIBADH 3-hydroxyisob 36.5 21 0.00053 16.4 1.7 149 6-178 19-180 (290)
227 PRK06019 phosphoribosylaminoim 36.1 16 0.00042 17.1 1.0 76 41-119 4-90 (377)
228 cd07615 BAR_Endophilin_A3 The 35.9 5.1 0.00013 20.4 -1.6 136 17-161 7-147 (223)
229 PRK12491 pyrroline-5-carboxyla 35.7 22 0.00057 16.2 1.7 60 55-130 35-99 (272)
230 COG4087 Soluble P-type ATPase 35.6 33 0.00084 15.1 5.1 72 87-164 33-104 (152)
231 pfam05222 AlaDh_PNT_N Alanine 35.6 33 0.00084 15.1 3.0 103 154-270 11-123 (135)
232 cd01574 PBP1_LacI Ligand-bindi 35.5 33 0.00084 15.1 3.3 99 59-161 18-124 (264)
233 PRK03369 murD UDP-N-acetylmura 35.5 32 0.00081 15.2 2.5 12 66-77 31-42 (487)
234 PRK00091 miaA tRNA delta(2)-is 35.2 33 0.00085 15.0 5.1 91 44-139 4-110 (304)
235 pfam12264 Peptidase_C03 Spheri 35.2 33 0.00085 15.0 3.2 43 40-82 84-126 (197)
236 pfam07302 AroM AroM protein. T 35.1 22 0.00057 16.2 1.6 27 163-190 112-138 (221)
237 PRK03094 hypothetical protein; 34.9 20 0.0005 16.5 1.3 60 63-137 14-74 (80)
238 pfam03698 UPF0180 Uncharacteri 34.9 20 0.00051 16.5 1.4 61 63-138 14-75 (80)
239 PRK10200 putative racemase; Pr 34.6 33 0.00083 15.1 2.4 84 86-185 61-149 (230)
240 pfam04918 DltD_M DltD central 34.4 24 0.00061 16.0 1.7 26 135-160 6-31 (163)
241 cd06294 PBP1_ycjW_transcriptio 34.3 34 0.00088 15.0 6.8 113 46-162 1-131 (270)
242 COG0345 ProC Pyrroline-5-carbo 34.3 23 0.00059 16.1 1.6 19 51-72 33-51 (266)
243 PRK08507 prephenate dehydrogen 34.3 25 0.00064 15.9 1.8 20 100-119 59-78 (275)
244 PRK12771 putative glutamate sy 34.1 35 0.00088 14.9 3.5 258 40-305 133-442 (560)
245 TIGR01292 TRX_reduct thioredox 33.5 21 0.00053 16.4 1.2 67 151-219 149-219 (321)
246 cd06284 PBP1_LacI_like_6 Ligan 33.4 36 0.00091 14.9 3.8 100 58-162 17-124 (267)
247 PRK13906 murB UDP-N-acetylenol 33.3 36 0.00091 14.9 3.9 50 47-108 36-87 (307)
248 pfam02601 Exonuc_VII_L Exonucl 32.9 36 0.00092 14.8 2.9 94 45-143 15-127 (295)
249 PRK06199 ornithine cyclodeamin 32.5 23 0.00058 16.2 1.3 76 148-225 150-231 (379)
250 TIGR00635 ruvB Holliday juncti 32.4 23 0.00058 16.1 1.3 39 63-106 48-88 (305)
251 TIGR00421 ubiX_pad polyprenyl 32.4 26 0.00066 15.7 1.6 24 245-268 126-150 (181)
252 cd01541 PBP1_AraR Ligand-bindi 31.9 38 0.00096 14.7 3.3 66 59-129 18-91 (273)
253 COG1484 DnaC DNA replication p 31.8 38 0.00096 14.7 3.1 86 134-228 88-178 (254)
254 COG1160 Predicted GTPases [Gen 31.8 33 0.00084 15.1 2.0 142 40-185 21-208 (444)
255 PRK00005 fmt methionyl-tRNA fo 31.3 38 0.00098 14.6 3.9 106 8-139 5-125 (309)
256 PRK09564 coenzyme A disulfide 31.3 32 0.00082 15.1 1.9 64 122-186 117-181 (443)
257 KOG3892 consensus 31.2 39 0.00098 14.6 2.7 41 119-159 142-187 (407)
258 PRK06198 short chain dehydroge 31.1 20 0.00052 16.5 0.9 20 167-186 169-188 (268)
259 cd01966 Nitrogenase_NifN_1 Nit 31.0 39 0.00099 14.6 5.6 32 150-182 297-328 (417)
260 PRK05579 bifunctional phosphop 30.9 33 0.00085 15.0 1.9 69 149-223 182-271 (392)
261 pfam03060 NPD 2-nitropropane d 30.6 39 0.001 14.6 3.2 22 10-31 41-62 (330)
262 pfam00389 2-Hacid_dh D-isomer 30.6 39 0.001 14.6 7.8 72 114-186 77-169 (313)
263 cd06296 PBP1_CatR_like Ligand- 30.5 40 0.001 14.6 3.2 99 59-162 18-126 (270)
264 TIGR02238 recomb_DMC1 meiotic 30.3 20 0.0005 16.6 0.7 34 1-34 29-62 (314)
265 cd07614 BAR_Endophilin_A2 The 30.3 5.3 0.00014 20.3 -2.2 134 17-159 7-145 (223)
266 PRK07424 bifunctional sterol d 29.9 24 0.00061 16.0 1.1 115 139-253 162-289 (410)
267 PRK07680 late competence prote 29.9 35 0.00089 14.9 1.9 31 100-130 63-98 (273)
268 pfam00148 Oxidored_nitro Nitro 29.9 41 0.001 14.5 4.7 36 149-185 268-303 (398)
269 PRK08268 3-hydroxybutyryl-CoA 29.7 37 0.00095 14.7 2.0 22 100-121 110-131 (503)
270 PRK11064 wecC UDP-N-acetyl-D-m 29.6 28 0.00072 15.5 1.4 72 149-228 316-398 (415)
271 cd01974 Nitrogenase_MoFe_beta 29.6 41 0.001 14.4 4.9 98 85-183 213-332 (435)
272 PRK10433 putative RNA methyltr 29.2 23 0.0006 16.1 0.9 29 48-76 4-33 (228)
273 TIGR00050 rRNA_methyl_1 RNA me 29.1 28 0.00072 15.5 1.3 73 152-225 3-83 (253)
274 CHL00076 chlB photochlorophyll 29.0 42 0.0011 14.4 4.1 41 86-126 203-243 (510)
275 PRK10717 cysteine synthase A; 29.0 35 0.00089 14.9 1.8 51 50-106 67-117 (334)
276 COG1064 AdhP Zn-dependent alco 28.8 32 0.00081 15.2 1.5 71 148-224 162-236 (339)
277 KOG1805 consensus 28.7 42 0.0011 14.4 2.5 12 13-24 669-680 (1100)
278 COG0031 CysK Cysteine synthase 28.5 43 0.0011 14.3 2.2 57 42-107 60-116 (300)
279 KOG3420 consensus 28.4 23 0.00057 16.2 0.7 47 133-179 29-78 (185)
280 COG0287 TyrA Prephenate dehydr 28.2 41 0.0011 14.4 2.1 60 60-119 16-84 (279)
281 cd01543 PBP1_XylR Ligand-bindi 28.2 43 0.0011 14.3 4.3 94 60-163 18-119 (265)
282 pfam02873 MurB_C UDP-N-acetyle 28.2 43 0.0011 14.3 4.4 83 29-149 8-92 (103)
283 KOG0523 consensus 28.1 43 0.0011 14.3 3.6 55 155-209 507-565 (632)
284 pfam04309 G3P_antiterm Glycero 28.1 35 0.0009 14.9 1.7 65 58-128 78-146 (174)
285 PRK06476 pyrroline-5-carboxyla 28.0 23 0.00058 16.1 0.7 11 100-110 62-72 (255)
286 pfam02548 Pantoate_transf Keto 28.0 43 0.0011 14.3 2.1 21 86-106 94-115 (261)
287 cd06323 PBP1_ribose_binding Pe 27.8 44 0.0011 14.2 3.6 84 56-143 15-105 (268)
288 PRK06128 oxidoreductase; Provi 27.8 27 0.00068 15.7 1.0 86 39-130 50-145 (300)
289 PRK10481 hypothetical protein; 27.7 36 0.00091 14.9 1.6 28 162-190 114-141 (224)
290 cd06285 PBP1_LacI_like_7 Ligan 27.7 44 0.0011 14.2 3.5 100 59-163 18-124 (265)
291 PTZ00082 L-lactate dehydrogena 27.5 42 0.0011 14.4 2.0 39 91-129 111-155 (322)
292 cd06368 PBP1_iGluR_non_NMDA_li 27.4 45 0.0011 14.2 8.7 131 47-181 2-158 (324)
293 PRK06585 holA DNA polymerase I 27.4 45 0.0011 14.2 4.3 84 45-129 20-117 (343)
294 COG1830 FbaB DhnA-type fructos 27.4 45 0.0011 14.2 3.1 99 87-190 43-157 (265)
295 COG2423 Predicted ornithine cy 27.3 38 0.00098 14.6 1.7 70 154-225 131-203 (330)
296 PRK05565 fabG 3-ketoacyl-(acyl 27.2 27 0.00068 15.7 0.9 20 167-186 167-186 (247)
297 cd01536 PBP1_ABC_sugar_binding 27.0 45 0.0012 14.2 2.8 101 57-161 16-129 (267)
298 COG2098 Uncharacterized protei 26.9 38 0.00096 14.7 1.7 44 50-94 4-47 (116)
299 PRK05724 acetyl-CoA carboxylas 26.6 19 0.00048 16.7 0.0 99 87-191 45-165 (318)
300 TIGR01748 rhaA L-rhamnose isom 26.6 24 0.00062 15.9 0.6 14 287-300 361-374 (415)
301 PRK11880 pyrroline-5-carboxyla 26.2 37 0.00095 14.7 1.5 32 99-130 62-96 (267)
302 cd06557 KPHMT-like Ketopantoat 26.0 47 0.0012 14.0 2.4 27 100-126 172-198 (254)
303 PRK09518 bifunctional cytidyla 25.7 45 0.0011 14.2 1.8 24 41-64 298-322 (714)
304 PRK12367 short chain dehydroge 25.7 33 0.00083 15.1 1.1 37 39-77 12-48 (250)
305 pfam00533 BRCT BRCA1 C Terminu 25.6 48 0.0012 14.0 5.0 34 39-74 3-36 (77)
306 PRK03003 engA GTP-binding prot 25.5 39 0.00099 14.6 1.5 36 41-78 57-93 (474)
307 PRK00141 murD UDP-N-acetylmura 25.2 44 0.0011 14.3 1.7 24 57-80 27-50 (476)
308 CHL00194 ycf39 Ycf39; Provisio 25.2 29 0.00073 15.5 0.8 122 61-182 92-227 (319)
309 cd06281 PBP1_LacI_like_5 Ligan 25.0 49 0.0013 13.9 3.2 101 57-162 16-125 (269)
310 COG1794 RacX Aspartate racemas 25.0 49 0.0013 13.9 2.5 67 49-129 38-106 (230)
311 PRK02048 4-hydroxy-3-methylbut 24.9 40 0.001 14.6 1.5 12 290-301 430-441 (613)
312 pfam04723 GRDA Glycine reducta 24.9 50 0.0013 13.9 2.1 40 150-189 2-42 (150)
313 KOG4165 consensus 24.8 49 0.0012 14.0 1.9 46 86-133 179-224 (433)
314 PRK12831 putative oxidoreducta 24.8 46 0.0012 14.2 1.7 258 39-305 135-463 (464)
315 PRK00124 hypothetical protein; 24.8 50 0.0013 13.9 2.9 26 160-185 7-32 (149)
316 TIGR03466 HpnA hopanoid-associ 24.6 29 0.00073 15.5 0.7 12 55-66 51-62 (328)
317 PRK13265 glycine/sarcosine/bet 24.6 50 0.0013 13.9 2.1 41 149-189 2-43 (157)
318 cd00983 recA RecA is a bacter 24.5 50 0.0013 13.9 5.0 38 43-80 54-93 (325)
319 TIGR01369 CPSaseII_lrg carbamo 24.5 28 0.00072 15.5 0.6 113 59-178 128-316 (1089)
320 TIGR03590 PseG pseudaminic aci 24.3 51 0.0013 13.8 2.8 106 17-140 16-125 (280)
321 cd00640 Trp-synth-beta_II Tryp 24.0 51 0.0013 13.8 2.6 53 50-108 53-105 (244)
322 PRK00311 panB 3-methyl-2-oxobu 24.0 52 0.0013 13.8 2.1 17 61-77 28-44 (266)
323 TIGR01963 PHB_DH 3-hydroxybuty 23.8 52 0.0013 13.8 2.7 135 59-204 40-205 (258)
324 PRK09526 lacI lac repressor; R 23.8 52 0.0013 13.8 6.9 147 13-162 31-190 (342)
325 PRK07985 oxidoreductase; Provi 23.8 35 0.00089 14.9 1.0 20 167-186 211-230 (294)
326 PRK07201 short chain dehydroge 23.6 28 0.00072 15.5 0.5 39 148-186 371-409 (663)
327 PRK13530 arsenate reductase; P 23.5 53 0.0013 13.7 2.6 73 152-225 2-82 (133)
328 PRK11749 putative oxidoreducta 23.4 34 0.00086 15.0 0.9 260 39-305 135-457 (460)
329 PRK11303 DNA-binding transcrip 23.1 54 0.0014 13.7 6.3 165 14-182 30-214 (330)
330 COG2719 SpoVR Uncharacterized 22.9 54 0.0014 13.7 2.2 17 14-30 153-169 (495)
331 PRK00080 ruvB Holliday junctio 22.8 38 0.00098 14.6 1.1 53 49-106 54-109 (328)
332 PRK10703 DNA-binding transcrip 22.8 54 0.0014 13.7 9.0 147 12-162 26-187 (335)
333 cd06393 PBP1_iGluR_Kainate_Glu 22.8 54 0.0014 13.7 8.1 133 46-182 4-171 (384)
334 TIGR00195 exoDNase_III exodeox 22.7 55 0.0014 13.6 2.4 102 66-170 49-172 (281)
335 PRK09492 treR trehalose repres 22.4 55 0.0014 13.6 8.3 145 13-163 30-186 (315)
336 TIGR01258 pgm_1 phosphoglycera 22.4 39 0.00099 14.6 1.0 20 151-171 173-192 (248)
337 PRK13609 diacylglycerol glucos 22.3 56 0.0014 13.6 3.9 42 93-135 97-142 (388)
338 pfam03721 UDPG_MGDP_dh_N UDP-g 22.2 56 0.0014 13.6 3.1 19 61-79 14-32 (185)
339 TIGR01169 rplA_bact ribosomal 22.1 25 0.00063 15.9 -0.0 27 182-218 128-154 (227)
340 PRK10754 quinone oxidoreductas 22.0 57 0.0014 13.5 3.6 84 133-222 121-214 (327)
341 PRK02910 light-independent pro 21.9 57 0.0014 13.5 4.6 140 66-212 184-352 (524)
342 PRK08213 gluconate 5-dehydroge 21.8 42 0.0011 14.4 1.1 21 166-186 177-197 (259)
343 COG1879 RbsB ABC-type sugar tr 21.6 57 0.0015 13.5 4.6 83 45-130 34-125 (322)
344 COG2515 Acd 1-aminocyclopropan 21.5 50 0.0013 13.9 1.4 136 46-185 66-213 (323)
345 cd06556 ICL_KPHMT Members of t 21.5 58 0.0015 13.5 2.2 18 62-79 24-41 (240)
346 cd06283 PBP1_RegR_EndR_KdgR_li 21.4 58 0.0015 13.5 3.4 100 58-162 17-125 (267)
347 TIGR00513 accA acetyl-CoA carb 21.3 43 0.0011 14.3 1.1 17 113-129 151-167 (329)
348 pfam11339 DUF3141 Protein of u 21.3 52 0.0013 13.8 1.5 31 128-159 307-340 (581)
349 PRK07791 short chain dehydroge 21.3 42 0.0011 14.4 1.0 21 166-186 181-201 (285)
350 cd01019 ZnuA Zinc binding prot 21.2 52 0.0013 13.8 1.5 14 167-180 187-200 (286)
351 PTZ00123 phosphoglycerate muta 21.2 41 0.001 14.5 0.9 51 12-73 13-63 (235)
352 cd06277 PBP1_LacI_like_1 Ligan 21.2 59 0.0015 13.4 3.8 117 56-178 18-149 (268)
353 TIGR03451 mycoS_dep_FDH mycoth 21.1 59 0.0015 13.4 2.1 82 135-222 159-250 (358)
354 KOG1191 consensus 21.1 59 0.0015 13.4 2.0 143 41-187 121-300 (531)
355 TIGR03594 GTPase_EngA ribosome 20.9 55 0.0014 13.6 1.5 15 153-168 172-186 (429)
356 cd01542 PBP1_TreR_like Ligand- 20.9 59 0.0015 13.4 3.4 98 59-161 18-122 (259)
357 COG0771 MurD UDP-N-acetylmuram 20.8 60 0.0015 13.4 2.8 17 61-77 21-37 (448)
358 KOG3042 consensus 20.8 60 0.0015 13.4 2.4 13 43-55 50-62 (283)
359 PRK08703 short chain dehydroge 20.8 46 0.0012 14.1 1.1 15 173-187 178-193 (239)
360 PRK05557 fabG 3-ketoacyl-(acyl 20.7 47 0.0012 14.1 1.1 20 167-186 167-186 (248)
361 PRK07819 3-hydroxybutyryl-CoA 20.6 50 0.0013 13.9 1.3 16 10-25 29-44 (284)
362 cd00468 HIT_like HIT family: H 20.5 60 0.0015 13.4 3.8 31 5-35 26-56 (86)
363 PRK06223 malate dehydrogenase; 20.5 60 0.0015 13.3 1.8 39 91-129 100-144 (312)
364 PRK06721 threonine synthase; R 20.5 61 0.0015 13.3 2.1 105 50-164 78-189 (352)
365 PRK07806 short chain dehydroge 20.4 45 0.0011 14.2 1.0 14 172-185 170-183 (248)
366 TIGR00433 bioB biotin synthase 20.3 61 0.0016 13.3 3.2 23 17-39 7-29 (350)
367 cd06308 PBP1_sensor_kinase_lik 20.2 61 0.0016 13.3 3.7 70 58-130 17-90 (270)
368 PRK13982 bifunctional SbtC-lik 20.2 61 0.0016 13.3 2.3 59 133-191 235-312 (476)
369 PRK08936 glucose-1-dehydrogena 20.1 48 0.0012 14.0 1.1 21 167-187 170-190 (261)
370 PRK06124 gluconate 5-dehydroge 20.1 45 0.0012 14.2 1.0 20 167-186 175-194 (259)
371 TIGR02025 BchH magnesium chela 20.1 55 0.0014 13.6 1.4 12 165-176 506-517 (1384)
372 cd01018 ZntC Metal binding pro 20.0 51 0.0013 13.8 1.2 12 254-265 239-250 (266)
373 cd06387 PBP1_iGluR_AMPA_GluR3 20.0 62 0.0016 13.3 7.9 100 46-147 1-124 (372)
No 1
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=100.00 E-value=0 Score=760.60 Aligned_cols=299 Identities=51% Similarity=0.857 Sum_probs=290.9
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 771784458999999999999999966523666------54437987999942888357899998986347543333210
Q gi|255764473|r 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFE------NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 6 k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~------~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~ 79 (306)
||||++.|||++|+..||++|..+|+..+.+.. .+.|+||||||||++||||||+|||.|+.+||||++||+++
T Consensus 1 rhLL~l~Dl~~~E~~~ll~~a~~~K~~~~~~~~ndfqsn~~~L~GKtlAliFeK~STRTRvSFEvA~y~lGg~~lyL~~~ 80 (341)
T TIGR00658 1 RHLLSLADLSPEEIRELLQLAKKLKKGKKKGKENDFQSNEKKLKGKTLALIFEKPSTRTRVSFEVAAYQLGGQPLYLNPS 80 (341)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEECCCC
T ss_conf 96220025898899999999998645754487442000213234881666652698652100779998649821224875
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCC---
Q ss_conf 0001232107999997530010111210132006776301244124043332024678765576642001--33677---
Q gi|255764473|r 80 EMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRG--SVKGK--- 154 (306)
Q Consensus 80 ~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g--~l~~~--- 154 (306)
++|+++|||++|||||||+|+|+|++|...|..+.+||+|++||||||+|+.+||||+|+|++||+|++| .|+|+
T Consensus 81 ~~QlG~gEsi~DTARVLsRyVD~I~~R~~~h~~v~~lA~yasVPVINgLtD~~HPcQ~LADllTI~E~~g~~~l~g~nkG 160 (341)
T TIGR00658 81 DLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIKEHFGEKKLKGVNKG 160 (341)
T ss_pred CCEECCCCCCCCHHHHHCCEEEEEEEECCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCC
T ss_conf 32003688700011020315656777325537899998548985460556855237999998889874679560000035
Q ss_pred -----CEEEECCC-CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHH----HCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf -----30461045-555431010012331257652000013210000243----20133222136646630687332221
Q gi|255764473|r 155 -----LFSWSGDG-NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 155 -----~i~~vGd~-~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~----~~~g~~i~~~~d~~eal~~aD~V~~~ 224 (306)
|++|+||+ |||+||++.+++++|+++.+++|++|.|...+++.+ +.+|++|+.++|+.+|+++|||||||
T Consensus 161 insklk~vy~GDgRNNVcnSL~la~a~~Gm~~~v~tP~gyeP~~~~v~~A~~~a~e~Gg~~~lt~Dp~eAv~gADv~YTD 240 (341)
T TIGR00658 161 INSKLKVVYVGDGRNNVCNSLLLAAAKLGMDVVVATPEGYEPDAEIVKKAKKIAKENGGSVELTHDPKEAVKGADVIYTD 240 (341)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEE
T ss_conf 24421689973785126889999999728547887888888787899999999971798599963779861289789974
Q ss_pred CEEECCC-CCHHHHH-HCCCCCCCCHHHHHCC-CCCCEEECCCCCCC------------------CCCCCHHHHCCCCCH
Q ss_conf 0000002-2013331-0011123368899628-98729925999874------------------873576796799710
Q gi|255764473|r 225 TWISMNQ-EFKAREE-HVFQPFQVNLSLMSMA-HPDALFMHCLPAHR------------------GEEVINEVLDGPQSV 283 (306)
Q Consensus 225 ~~~~~~~-~~~~~~~-~~~~~y~i~~~~l~~a-~~~~~vmHplP~~r------------------g~EI~~~v~d~~~s~ 283 (306)
+|.|||+ +.+..++ +.|+|||||.++|+.| +|+++||||||++| |.|||+||+++|+|+
T Consensus 241 VWvSMGe~e~~~~eR~~~F~PYQVN~~Ll~~aG~p~~~fMHCLPA~r~~~T~~G~~~AE~~~L~~G~EvTdeV~eg~~S~ 320 (341)
T TIGR00658 241 VWVSMGEAEDKKEERLKIFRPYQVNEELLELAGKPEVIFMHCLPAHRDDETKLGKKIAEKYGLANGEEVTDEVIEGPHSI 320 (341)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHCCCCCCE
T ss_conf 12356983667888998368988787998413889817833788875752136788887547888814008673599983
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 686877559999999999625
Q gi|255764473|r 284 VFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 284 ~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
+|+|||||+|+|||||.++||
T Consensus 321 VfDqAENRlHaqKAvm~~~l~ 341 (341)
T TIGR00658 321 VFDQAENRLHAQKAVMVALLG 341 (341)
T ss_pred EHHHHHHHHHHHHHHHHHHHC
T ss_conf 130264479999999999819
No 2
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=687.74 Aligned_cols=302 Identities=58% Similarity=0.915 Sum_probs=286.0
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
++||||+++||++++|+.||++|.++|+.++++...++|+||+++++|+|||||||+|||+|+++|||+++++++.+||+
T Consensus 4 ~~k~llsi~dls~~~i~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epSTRTr~SFe~A~~~LGg~~i~~~~~~ss~ 83 (308)
T PRK00779 4 MGRHFLSLSDLTPEELRELLELAAELKAKRKAGELYKPLKGKTLAMIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQL 83 (308)
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 88785860009999999999999999866645876766899889999706874255739998862893899668765656
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 23210799999753001011121013200677630124412404333202467876557664200133677304610455
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN 163 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~ 163 (306)
+||||++||+++|+.|+|++|+||++++.+.++++++++|||||+++++||||||+|+|||+|++|+++|++|+||||++
T Consensus 84 ~kgEsl~Dt~~~l~~~~D~iviR~~~~~~~~~~a~~~~vPVINa~~d~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGD~~ 163 (308)
T PRK00779 84 GRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSIKGKTVAWVGDGN 163 (308)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 78978999999998547799993243011899987489878967888767389999999999983867787599983874
Q ss_pred CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCC-CCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHH-HHCC
Q ss_conf 554310100123312576520000132100002432013-32221366466306873322210000002201333-1001
Q gi|255764473|r 164 NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQG-ASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE-EHVF 241 (306)
Q Consensus 164 ~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g-~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~-~~~~ 241 (306)
||+||+++++++||+++.+++|+++.|+++++++++..+ .++.+++|++++++++|+||||+|.+|+.+....+ .+.+
T Consensus 164 nV~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviytd~w~sm~~~~~~~~~~~~~ 243 (308)
T PRK00779 164 NVANSLLLAAALLGFDLRVATPKGYEPDPEIVAKARAIAEASIEVTHDPEEAVKGADVVYTDVWVSMGQEAEAEERLKAF 243 (308)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 53999999999779989998883027899999999974689589983999996259999850410255378999999876
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1123368899628987299259998748735767967997106868775599999999996255
Q gi|255764473|r 242 QPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 242 ~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
.+||||.++|+.++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+|+||-
T Consensus 244 ~~y~vt~~~l~~ak~~~ivMHplP~~Rg~EI~~~V~d~p~s~i~~Qa~Ngl~vrmAiL~~lLgg 307 (308)
T PRK00779 244 APYQVNAELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAWLLGG 307 (308)
T ss_pred HHCCCCHHHHHHCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 5356589999726999899798988888636676756986569999860599999999998579
No 3
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=681.67 Aligned_cols=303 Identities=41% Similarity=0.626 Sum_probs=283.2
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM 81 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s 81 (306)
|..+||||+++||+++||..||++|.++|+.++++.....|+||+++++|+|||||||+|||+|+++|||+++++++++|
T Consensus 1 M~k~kh~L~~~Dls~~ei~~ll~~A~~~K~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~~ 80 (341)
T PRK02255 1 MNKKRDFIDTQDYSKEEILYMIDLGLKLKEAIKNGAYPQLLKNKSLGMIFEQPSTRTRVSFETAMTQLGGHAQYLAPGQI 80 (341)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 99875647222199999999999999998777558887557999899996789710799999999985997998276544
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC---CCCCCCCEEE
Q ss_conf 0123210799999753001011121013200677630124412404333202467876557664200---1336773046
Q gi|255764473|r 82 QLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHR---GSVKGKLFSW 158 (306)
Q Consensus 82 s~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~---g~l~~~~i~~ 158 (306)
|++||||++||+++||+|+|+||+||+.++.+.++++++++|||||+++.+||||+|+|+|||+|++ |.++|++|+|
T Consensus 81 sl~kgEsl~DT~~vls~~~D~iviR~~~~~~~~~la~~~~vPVINg~~~~~HPtQaL~Dl~Ti~e~~~~~~~l~glkva~ 160 (341)
T PRK02255 81 HLGGHESIEDTARVLSRMVDIIMARVLRHQTVVELAKYATVPVINGMSDYNHPTQELGDVFTMLEHLPAGKKLEDCKVVF 160 (341)
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 57887669999999986378899993484679999986799989789988772789998999999860179845656887
Q ss_pred ECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHH----CCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCH
Q ss_conf 10455554310100123312576520000132100002432----01332221366466306873322210000002201
Q gi|255764473|r 159 SGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWAR----NQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFK 234 (306)
Q Consensus 159 vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~----~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~ 234 (306)
|||++||+||++.++++||+++.+++|+++.+++++++.++ ..|.++.+++|++++++++|+||||+|.+|.....
T Consensus 161 vGD~~nv~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~w~~~~~~~~ 240 (341)
T PRK02255 161 VGDATQVCSSLMFITTKMGMDFVHFGPKGFQLPEEHLAIARENCEVSGGSVLVTDDADEAVKDADFIYTDVWYGLYEQEL 240 (341)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 26853448899999997599899987974689999999999999973997999978888725798785107888632165
Q ss_pred HH---HHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33---31001112336889962898729925999874873576796799710686877559999999999625
Q gi|255764473|r 235 AR---EEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 235 ~~---~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
.. ...++..||||.++|+.++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+|+|.
T Consensus 241 ~~~~~~~~~~~~y~v~~~~m~~a~~~ai~MHplPa~Rg~EIs~eV~d~p~S~i~~QaeNgl~vrmAlL~~lL~ 313 (341)
T PRK02255 241 SEEERMKIFYPKYQVNPELMAKAGPHAKFMHCLPASRGEEVTDEVMDSPQSIIFDEAENRLTAMRALLVYFLN 313 (341)
T ss_pred HHHHHHHHHCCCCEECHHHHHCCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5899987634465777999945898989989998988873077885899877999997309999999999848
No 4
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=100.00 E-value=0 Score=673.61 Aligned_cols=301 Identities=41% Similarity=0.689 Sum_probs=284.9
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87717844589999999999999999665236665443798799994288835789999898634754333321000012
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLG 84 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~ 84 (306)
+||||+++||+++||..||++|.++|+.+.++...+.|+||+++++|+|||||||+|||+|+++|||+++++++++||++
T Consensus 7 ~kh~L~~~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~ 86 (331)
T PRK02102 7 GRSFLKLLDFTPAEIEYLIDLSIELKAAKKAGIEHQYLKGKNIALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDIQLG 86 (331)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99818500099999999999999998766458877667999899995589730599999999985990995787556377
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-C
Q ss_conf 321079999975300101112101320067763012441240433320246787655766420013367730461045-5
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDG-N 163 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~-~ 163 (306)
||||++||+++||.|+|+||+||++++.+.++++++++|||||+++.+||||+|+|+|||+|++|.++|++|+||||. +
T Consensus 87 kGEs~~Dt~~~Ls~~~D~iviR~~~~~~~~~~a~~~~vPVIN~~~~~~HPtQ~L~Dl~Ti~e~~g~l~gl~i~~vGD~~n 166 (331)
T PRK02102 87 KKESMEDTARVLGRMYDGIEYRGFSQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYLGDGRN 166 (331)
T ss_pred CCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 89898999999997516789962772899999974798645488876487999999999999838756773899788764
Q ss_pred CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHH----HCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH-HHH
Q ss_conf 55431010012331257652000013210000243----2013322213664663068733222100000022013-331
Q gi|255764473|r 164 NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA-REE 238 (306)
Q Consensus 164 ~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~----~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~-~~~ 238 (306)
||+||++.++++||+++++++|++|.|++.++..+ +..|..+.+++|+.+|+++||+||||+|.+|+++... +..
T Consensus 167 nVa~S~~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDVvytdvw~sm~~~~~~~~r~ 246 (331)
T PRK02102 167 NMANSLLVGGAKLGMDVRICAPKSLWPEEELVAQAKEIAKETGAKITITEDVEEAVKGADVIYTDVWVSMGEEEKWEERI 246 (331)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCEEEEEHHHCCCHHHHHHHHH
T ss_conf 24668999998559859997586448897999999999998299389995666663357656530332233477799999
Q ss_pred HCCCCCCCCHHHHHCC-CCCCEEECCCCC-----------------CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0011123368899628-987299259998-----------------7487357679679971068687755999999999
Q gi|255764473|r 239 HVFQPFQVNLSLMSMA-HPDALFMHCLPA-----------------HRGEEVINEVLDGPQSVVFDEAENRLHTQKAILL 300 (306)
Q Consensus 239 ~~~~~y~i~~~~l~~a-~~~~~vmHplP~-----------------~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~ 300 (306)
+++.+||+|.++|+.+ |++++||||||+ +||+||+++|+|+|+|+||+||+||+|+|||||+
T Consensus 247 ~~~~~y~v~~~l~~~a~k~~ai~MH~LPa~~n~~~~~~~~~~~~~~~RG~EI~~~V~d~p~S~i~~QaeNrl~~r~AvL~ 326 (331)
T PRK02102 247 KLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMV 326 (331)
T ss_pred HHHCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87407637899997347999489734877532232100222013577753866888488763025477521999999999
Q ss_pred HHHCC
Q ss_conf 96255
Q gi|255764473|r 301 WCFGI 305 (306)
Q Consensus 301 ~~lG~ 305 (306)
++||.
T Consensus 327 ~~LGd 331 (331)
T PRK02102 327 ATLGD 331 (331)
T ss_pred HHHCC
T ss_conf 98478
No 5
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=100.00 E-value=0 Score=663.66 Aligned_cols=302 Identities=39% Similarity=0.633 Sum_probs=283.0
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
++||||+++||+++||..||++|.++|+.+.++...+.|+||+++++|+|||||||+|||+|+++|||+++++++++||+
T Consensus 5 ~~k~~l~~~Dls~~ei~~il~~A~~lK~~~~~~~~~~~L~gk~i~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~ 84 (334)
T PRK03515 5 YQKHFLKLLDFTPAELNALLQLAAKLKADKKSGKEEQKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQI 84 (334)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 78884760119999999999999999867654887756799889999648870379999999998299299967753436
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEEECC
Q ss_conf 23210799999753001011121013200677630124412404333202467876557664200--1336773046104
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHR--GSVKGKLFSWSGD 161 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~--g~l~~~~i~~vGd 161 (306)
+||||++||+++||+|+|+||+||++++.+.++++++++|||||+++++||||+|+|+|||+|++ |+++|++|+||||
T Consensus 85 ~kgEsl~DTarvLs~~~D~Iv~R~~~~~~~~~~a~~s~vPVINg~~~~~HPtQaL~Dl~Ti~E~~~~~~l~~lkia~vGD 164 (334)
T PRK03515 85 GHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (334)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 68987899999999618879996755489999998769876648988878679999999999985689756648999578
Q ss_pred C-CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHH----HHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHH
Q ss_conf 5-5554310100123312576520000132100002----4320133222136646630687332221000000220133
Q gi|255764473|r 162 G-NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLN----WARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAR 236 (306)
Q Consensus 162 ~-~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~ 236 (306)
. |||+||++.++++||+++++++|++|.|+.+++. .++..|.++.+++|+.+++++||+||||+|.+|+++.+..
T Consensus 165 ~~nnv~~Sl~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDviytd~w~smg~~~~~~ 244 (334)
T PRK03515 165 ARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECQALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPKEKW 244 (334)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCEEEEEHHHHCCCHHHHH
T ss_conf 76545899999998549749997797568887899999999997199189960456551578788730213223246668
Q ss_pred --HHHCCCCCCCCHHHHHCC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf --310011123368899628-987299259998------------------74873576796799710686877559999
Q gi|255764473|r 237 --EEHVFQPFQVNLSLMSMA-HPDALFMHCLPA------------------HRGEEVINEVLDGPQSVVFDEAENRLHTQ 295 (306)
Q Consensus 237 --~~~~~~~y~i~~~~l~~a-~~~~~vmHplP~------------------~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr 295 (306)
..+.+++||+|.++|+.+ +++++||||||+ |||+||+++|+|+|+|+||+||+||+|+|
T Consensus 245 ~er~~~~~~y~v~~~l~~~~~~~~~~~mHclPa~~~~~~~~~~~~~~~~p~~rG~EI~~~V~d~~~S~i~~QaeNrl~~~ 324 (334)
T PRK03515 245 AERIALLRDYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEVTDEVFESAASIVFDQAENRLHTI 324 (334)
T ss_pred HHHHHHHHCCEECHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98987612525249999622799908957888775211100022202478888618788885788646999987059999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999996255
Q gi|255764473|r 296 KAILLWCFGI 305 (306)
Q Consensus 296 ~AiL~~~lG~ 305 (306)
||||+++||.
T Consensus 325 ~AvL~~~L~k 334 (334)
T PRK03515 325 KAVMVATLSK 334 (334)
T ss_pred HHHHHHHHCC
T ss_conf 9999998667
No 6
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=100.00 E-value=0 Score=662.11 Aligned_cols=302 Identities=39% Similarity=0.631 Sum_probs=282.3
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
++||||+++||+++||..||++|.++|..+.++.....|+||+++++|||||||||+|||+|+++|||+++++++++||+
T Consensus 5 ~~kh~L~i~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gK~v~~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~s~~ 84 (334)
T PRK12562 5 YHKHFLKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQI 84 (334)
T ss_pred CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 88885771006999999999999999866645886767899989999678970479999999998599789858764527
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEEECC
Q ss_conf 23210799999753001011121013200677630124412404333202467876557664200--1336773046104
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHR--GSVKGKLFSWSGD 161 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~--g~l~~~~i~~vGd 161 (306)
+||||++||+++||+|+|+||+||++++.+.++++++++|||||+++.+||||+|+|+|||+|++ +.++|++|+|+||
T Consensus 85 ~kgEsl~Dt~~vLs~~~D~iv~R~~~~~~~~~la~~s~vPVINg~~~~~HPtQaL~Dl~Ti~E~~~g~~l~~l~i~~vGD 164 (334)
T PRK12562 85 GHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred CCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 89988899999998607778973557389999999759998889987767179999999999984689867718999688
Q ss_pred C-CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHH----HHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH-
Q ss_conf 5-55543101001233125765200001321000024----32013322213664663068733222100000022013-
Q gi|255764473|r 162 G-NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNW----ARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA- 235 (306)
Q Consensus 162 ~-~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~- 235 (306)
. |||+||++.++++||+++.+++|+++.|++.++.. ++..|.++++++|+++++++||+||||+|.+|+++.+.
T Consensus 165 ~~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~sm~~~~e~~ 244 (334)
T PRK12562 165 ARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKW 244 (334)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEEHHHHCCCHHHHH
T ss_conf 86635799999999749869997897668888999999999997099289984688870578789864265525466778
Q ss_pred -HHHHCCCCCCCCHHHHHCC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf -3310011123368899628-987299259998------------------74873576796799710686877559999
Q gi|255764473|r 236 -REEHVFQPFQVNLSLMSMA-HPDALFMHCLPA------------------HRGEEVINEVLDGPQSVVFDEAENRLHTQ 295 (306)
Q Consensus 236 -~~~~~~~~y~i~~~~l~~a-~~~~~vmHplP~------------------~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr 295 (306)
+....+.+||+|.++++.+ +++++||||||+ |||+||+++|+|+|+|+||+||+||+|+|
T Consensus 245 ~e~~~~~~~y~v~~~~~~~~~~~~~~~mHclPa~r~~~~~~~~~~~~~~~~~RG~EIt~~V~d~~~S~i~~QaeNrl~vr 324 (334)
T PRK12562 245 AERIALLRDYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAAEFGLHGGMEVTDEVFESPASIVFDQAENRMHTI 324 (334)
T ss_pred HHHHHHHHCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998730862259999621899919958998887322110012200257888728568885888666999987139999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999996255
Q gi|255764473|r 296 KAILLWCFGI 305 (306)
Q Consensus 296 ~AiL~~~lG~ 305 (306)
||||+++||.
T Consensus 325 ~AvL~~~Lgk 334 (334)
T PRK12562 325 KAVMVATLAK 334 (334)
T ss_pred HHHHHHHHCC
T ss_conf 9999998575
No 7
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=658.79 Aligned_cols=301 Identities=36% Similarity=0.596 Sum_probs=281.8
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87717844589999999999999999665236665443798799994288835789999898634754333321000012
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLG 84 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~ 84 (306)
+||||+++||+++||+.||++|.++|+....+...++|+||+++++|+|||||||+|||+|+++|||+++++++++||++
T Consensus 6 ~rh~l~~~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~ 85 (332)
T PRK04284 6 NRSFLTLLDFSRQEVEFLLTLSEDLKRAKYAGTEKPMLKGKNIALLFEKDSTRTRCAFEVAAHDQGAHVTYLGPTGSQMG 85 (332)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 88868711089999999999999997555458878678999899996379720699999999985996898488645278
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEECCC-
Q ss_conf 321079999975300101112101320067763012441240433320246787655766420013-367730461045-
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGS-VKGKLFSWSGDG- 162 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~-l~~~~i~~vGd~- 162 (306)
||||++||+++||+|+|+||+||+.+..+.++++++++|||||.++++||||+|+|++||+|++|. ++|++|+||||.
T Consensus 86 kgEsi~DT~~vls~~~D~iv~R~~~~~~~~~~a~~s~vPViNg~~~~~HPtQ~L~D~~Ti~E~~~~~~~~lkva~vGD~~ 165 (332)
T PRK04284 86 KKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKPYADINFTYVGDGR 165 (332)
T ss_pred CCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 87789999999996288899953461899999986799988689987772689988899999713665672899967988
Q ss_pred CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHH----HHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH--H
Q ss_conf 55543101001233125765200001321000024----32013322213664663068733222100000022013--3
Q gi|255764473|r 163 NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNW----ARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA--R 236 (306)
Q Consensus 163 ~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~--~ 236 (306)
+||+||++.++++||+++++++|+++.|++++++. +++.|.++.+++|+++++++||+||||+|++|+++.+. .
T Consensus 166 nnVa~S~~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~av~~aDviytd~w~s~~~~~~~~~~ 245 (332)
T PRK04284 166 NNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKE 245 (332)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 65115799999975993799758555889999999999999719908995149888525889987644315770355788
Q ss_pred HHHCCCCCCCCHHHHHCCC-CCCEEECCCCCC-----------------CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3100111233688996289-872992599987-----------------4873576796799710686877559999999
Q gi|255764473|r 237 EEHVFQPFQVNLSLMSMAH-PDALFMHCLPAH-----------------RGEEVINEVLDGPQSVVFDEAENRLHTQKAI 298 (306)
Q Consensus 237 ~~~~~~~y~i~~~~l~~a~-~~~~vmHplP~~-----------------rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~Ai 298 (306)
..+++.+||||.++|+.++ ++++||||||++ ||+||+++|+|+|+|+||+||+||+|+||||
T Consensus 246 r~~~~~~y~v~~elm~~~~~~~~ifmHcLPa~~~~~~~~g~~~~~~~~~Rg~EIt~eV~d~~~S~if~QAeNrl~~~~Al 325 (332)
T PRK04284 246 RIELLKPYQVTKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGLREMEVTDEVFESKASVVFQEAENRMHTIKAV 325 (332)
T ss_pred HHHHHHCCEECHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEECHHHHCCCCCEEHHHHHCCHHHHHHH
T ss_conf 88664174773999974589894997888888754432230000034886868778895798740010854409999999
Q ss_pred HHHHHCC
Q ss_conf 9996255
Q gi|255764473|r 299 LLWCFGI 305 (306)
Q Consensus 299 L~~~lG~ 305 (306)
|+++||-
T Consensus 326 L~~~LG~ 332 (332)
T PRK04284 326 MVATLGE 332 (332)
T ss_pred HHHHHCC
T ss_conf 9997088
No 8
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=656.66 Aligned_cols=304 Identities=24% Similarity=0.358 Sum_probs=281.4
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333-32100
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIF-LSGSE 80 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~-~~~~~ 80 (306)
.-..||||+++||+++||..||++|.++|....+.....+|+||+++++|+|||||||+|||+|+++|||+++. ++..+
T Consensus 2 ~l~grhlLsi~Dls~~ei~~ll~~A~~lk~~~~~~~~~~~L~gk~la~lF~kpSTRTR~SFE~A~~~LGg~~~~~~~~~~ 81 (338)
T PRK08192 2 QFEGSHILSVNQLDLDSIQTIFNVASRMMPYALRQKRTTVLDGAILGNLFFEPSTRTRVSFGCAFNLLGGHVRETTGMAS 81 (338)
T ss_pred CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 89987859700189999999999999998787478878668999899996289744699999999984998602578332
Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCC-CCHHHHHHHHHHHHHHHC----CCCCCCC
Q ss_conf 00123210799999753001011121013200677630124412404333-202467876557664200----1336773
Q gi|255764473|r 81 MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTD-NTHPCQIIADIMTFEEHR----GSVKGKL 155 (306)
Q Consensus 81 ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~----g~l~~~~ 155 (306)
||++||||++||+++||+|+|+||+||++++.+.++++++++||||||++ ++||||+|+|+|||+|++ |+++|++
T Consensus 82 s~l~kGEsi~DTarvls~y~D~iviR~~~~~~~~e~a~~s~vPVINa~~~~~~HPtQaLaDl~Ti~e~~~~~~~~l~glk 161 (338)
T PRK08192 82 SSLSKGESLYDTARVLSTYSDVIAMRHPDAYSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMH 161 (338)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 44678978999999986159899998851004899874189878967889876827898889999999874089855748
Q ss_pred EEEECC--CCCCCCCHHHCCCCC-CEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCC
Q ss_conf 046104--555543101001233-12576520000132100002432013322213664663068733222100000022
Q gi|255764473|r 156 FSWSGD--GNNILHSLIEGAARF-NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQE 232 (306)
Q Consensus 156 i~~vGd--~~~v~hS~i~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~ 232 (306)
|+|||| ++|++||++.++.++ |+++++++|+++.|+++.+..+++.|.++.+++|++++++++|+||+++|+.++..
T Consensus 162 ia~vGD~~~~r~~~s~~~ll~~~~g~~~~l~~P~~~~~p~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvy~~~~q~e~~~ 241 (338)
T PRK08192 162 IAMVGDLKFGRTVHSLSRLLCMYKNISFTLISPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRIQEERFP 241 (338)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHCCCEEEEECCEEECCCC
T ss_conf 99976777563899999999965598899989987789999999999849949997288897236849995754553565
Q ss_pred CHHHHHHCCCCCCCCHHHHH-CCCCCCEEECCCCCC---CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01333100111233688996-289872992599987---48735767967997106868775599999999996255
Q gi|255764473|r 233 FKAREEHVFQPFQVNLSLMS-MAHPDALFMHCLPAH---RGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 233 ~~~~~~~~~~~y~i~~~~l~-~a~~~~~vmHplP~~---rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
...+...++.+||||.+++. .+++|++||||||+| ||.||+++|+|+|+|+||+||+||+|+|||||+|+||.
T Consensus 242 ~~~~~~~~~~~y~v~~~ll~~~ak~dai~MHcLP~n~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r~AlL~~lLG~ 318 (338)
T PRK08192 242 SQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLGV 318 (338)
T ss_pred CHHHHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77899999746713799998308999999799999999770483777756998737999873099999999997299
No 9
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=659.95 Aligned_cols=302 Identities=52% Similarity=0.812 Sum_probs=284.7
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM 81 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s 81 (306)
+..+||||++.||+++|+..|+++|.++|...+.+....+ +||+++|+|+++|||||+|||.|+.+|||++++++++++
T Consensus 3 ~~~~rhfL~l~D~t~~El~~ll~~A~~lK~~~~~~~~~~~-~gk~laliFeK~STRTR~SFe~a~~qlGg~~~~l~~~~~ 81 (310)
T COG0078 3 NLAGRHFLSLLDFTPEELEALLDLAAELKAAKKAGKELKL-KGKNLALIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDS 81 (310)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 6643330405209999999999999999874515874256-896599996489840454499999976896487088755
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 01232107999997530010111210132006776301244124043332024678765576642001336773046104
Q gi|255764473|r 82 QLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 82 s~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
|+++|||++||+++||+|+|+|++|+++|..+.++++++.+|||||+++.+||||+|+|++||+|++|.++|+|++|+||
T Consensus 82 Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~v~~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGD 161 (310)
T COG0078 82 QLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGD 161 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 26789967889999985502577853548999999972799667254566681899999999999638666857999767
Q ss_pred CCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHC----CCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHH
Q ss_conf 555543101001233125765200001321000024320----1332221366466306873322210000002201333
Q gi|255764473|r 162 GNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARN----QGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE 237 (306)
Q Consensus 162 ~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~----~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~ 237 (306)
+|||+||++.+++++|+++++++|+++.|.+++++.+++ +|+++++++|+.+|+++||+||||+|.||+++.+..+
T Consensus 162 gNNv~~Sl~~~~a~~G~dv~ia~P~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~ 241 (310)
T COG0078 162 GNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEE 241 (310)
T ss_pred CCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 63699999999998298689978986786989999999999853984898639889857899998367656762234078
Q ss_pred -H-HCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -1-001112336889962898729925999874873576796799710686877559999999999625
Q gi|255764473|r 238 -E-HVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 238 -~-~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
+ .++++||||.++|+.++++++||||||++||.||+++|+|+|+|++|+|||||+|++||||.|++|
T Consensus 242 ~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 242 RRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred HHHHHCCCCEECHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 888537785357999950379828974788777871579895787514730632108999999999639
No 10
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=0 Score=654.63 Aligned_cols=293 Identities=30% Similarity=0.437 Sum_probs=270.6
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
.+||||+++||+++++..||++|.++|+.+.... ...|+||+++++|+|||||||+|||+|+++|||+++++++.+||+
T Consensus 5 ~~k~~lsi~Dls~~ei~~ll~~A~~~K~~~~~~~-~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~ 83 (304)
T PRK00856 5 KMKHLLSIEDLSREEIELLLDTAEQFKAVPRVKK-VPLLRGKTVANLFFEPSTRTRLSFELAAKRLGADVINFSASTSSV 83 (304)
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 7688087221999999999999999973321267-865689889999715874057889999983896698706664655
Q ss_pred CCCCCHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 2321079999975300-1011121013200677630124412404333-2024678765576642001336773046104
Q gi|255764473|r 84 GRAETIGDTAKVLSRY-VDAIVMRTTNHSRLLELTEYATVPVINALTD-NTHPCQIIADIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~-~D~iviR~~~~~~~~~~~~~~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
+||||++||+++||+| +|+||+||++++.++++++++++|||||||| ++||||+|+|+|||+|++|+++|+||+|+||
T Consensus 84 ~kgEsi~DTarvls~y~~D~iv~R~~~~~~~~~~a~~s~vPVINagdg~~eHPtQaLaDl~Ti~e~~g~l~glki~~vGD 163 (304)
T PRK00856 84 SKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAEKVNVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD 163 (304)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 68978999999999727979999168656999999868998897999977684699987999998638777876999847
Q ss_pred CC--CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEE--CCCCCHHHH
Q ss_conf 55--55431010012331257652000013210000243201332221366466306873322210000--002201333
Q gi|255764473|r 162 GN--NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWIS--MNQEFKARE 237 (306)
Q Consensus 162 ~~--~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~--~~~~~~~~~ 237 (306)
.+ ||+|||++++++||+++++++|+++.|+. .+.++.+++|++++++++|+||+++++. +++....+.
T Consensus 164 ~~n~rv~~Sl~~~~~~~g~~~~~~~P~~~~p~~--------~~~~~~~~~d~~~av~~aDvvy~trvq~Er~~~~~~~~~ 235 (304)
T PRK00856 164 IKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG--------IELGVRVHTDLEEVIEEADVVMMLRVQKERMDGGLLPSY 235 (304)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHH--------HCCCEEEECCHHHHHCCCCEEEEEHHHHHHHCCCCCHHH
T ss_conf 874567999999999769869997785338844--------469839986999996269899985577776114210368
Q ss_pred HHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10011123368899628987299259998748735767967997106868775599999999996255
Q gi|255764473|r 238 EHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 238 ~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
++++.+||||.++|++++++++||||||+|||.||+++|+++|+|+||+||+||+|+|||||+|+||-
T Consensus 236 ~~~~~~y~v~~~~m~~a~~~ai~mHcLPa~Rg~Ei~~~V~d~~~s~v~~QaeNrl~~~~AvL~~llgg 303 (304)
T PRK00856 236 EEYHRQYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSRIFEQVTNGVAVRMAVLELLLGG 303 (304)
T ss_pred HHHCCCEEECHHHHHCCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87255234589999607999899897998788603787757984679999871599999999998679
No 11
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=651.16 Aligned_cols=299 Identities=36% Similarity=0.605 Sum_probs=279.7
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87717844589999999999999999665236665443798799994288835789999898634754333321000012
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLG 84 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~ 84 (306)
+||||++.||+++||..||++|.++|+.+..+...+.|+||+++++|+|||||||+|||+|+++|||+++++++++||++
T Consensus 7 ~rhlL~~~d~s~~ei~~il~~A~~~K~~~~~~~~~~~L~gK~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~ 86 (334)
T PRK01713 7 NRHLLSLVNHTEREIKYLLDLSRDLKRAKYAGTEQQRLKGKNIALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPTSSQIG 86 (334)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99838700099999999999999998665268878778999899984799626899999999985990998475124578
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEECCC-
Q ss_conf 321079999975300101112101320067763012441240433320246787655766420013-367730461045-
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGS-VKGKLFSWSGDG- 162 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~-l~~~~i~~vGd~- 162 (306)
||||++||+++||+|+|+||+||++++.+.++++++++|||||+++.+||||+|+|+|||+|++|. ++|++|+|+||.
T Consensus 87 kgEsl~Dta~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVINg~~~~~HPtQ~LaDl~Ti~E~~~~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 87 HKESMKDTARVLGRMYDAIEYRGFKQSIVNELAKYAGVPVFNGLTDEFHPTQMLADVLTMIEHCEKPLSEISYVYIGDAR 166 (334)
T ss_pred CCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99899999999996285899954672899999986599889389787775899988999999841654674999938975
Q ss_pred CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHH----HHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHH-
Q ss_conf 5554310100123312576520000132100002----43201332221366466306873322210000002201333-
Q gi|255764473|r 163 NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLN----WARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE- 237 (306)
Q Consensus 163 ~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~- 237 (306)
+||+||++.++++||+++++++|+++.|++.+++ +++..|.++.+++|++++++++|+||||+|.+|+++.+...
T Consensus 167 nnv~~S~~~~~~~lG~~v~i~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~smg~~~~~~~e 246 (334)
T PRK01713 167 NNMGNSLLLIGAKLGMDVRICAPKALLPEDSLVEMCEKFAKESGARITVTDDIDTAVKGVDFVHTDVWVSMGEPLETWGE 246 (334)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEEEEEECCCHHHHHHH
T ss_conf 41889999999977997999889765878899999999999719908996078888567868987667636645777889
Q ss_pred -HHCCCCCCCCHHHHHCC-CCCCEEECCCCC-------------------CCCCCCCHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf -10011123368899628-987299259998-------------------748735767967997106868775599999
Q gi|255764473|r 238 -EHVFQPFQVNLSLMSMA-HPDALFMHCLPA-------------------HRGEEVINEVLDGPQSVVFDEAENRLHTQK 296 (306)
Q Consensus 238 -~~~~~~y~i~~~~l~~a-~~~~~vmHplP~-------------------~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~ 296 (306)
.+.+.+||||.++|+++ +++++||||||+ +||+||+++|+|+|+|+||+||+||+|+||
T Consensus 247 r~~~~~~y~v~~elm~~~~~~~~~fmHcLPa~~~~e~~~~~~~~~~~P~~~rG~EIt~~V~d~p~S~if~QAeNrlh~~k 326 (334)
T PRK01713 247 RIDLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPALANGIEVTEEVFESPMNIAFEQAENRMHTIK 326 (334)
T ss_pred HHHHHCCCEEHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 98775178362999975289992996888666531000002456526888787286589968898732689875599999
Q ss_pred HHHHHHH
Q ss_conf 9999962
Q gi|255764473|r 297 AILLWCF 303 (306)
Q Consensus 297 AiL~~~l 303 (306)
|||+++|
T Consensus 327 AvL~~~L 333 (334)
T PRK01713 327 AVMVASL 333 (334)
T ss_pred HHHHHHH
T ss_conf 9999986
No 12
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=100.00 E-value=0 Score=656.03 Aligned_cols=299 Identities=30% Similarity=0.417 Sum_probs=286.9
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEE--EECCCCCHHHHHHHHHHHHCCC--CCCCCCC-C
Q ss_conf 77178445899999999999999996652366654-437987999--9428883578999989863475--4333321-0
Q gi|255764473|r 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENK-PLSGKVLAM--IFEKPSTRTRVSFEVAMKHLGG--DTIFLSG-S 79 (306)
Q Consensus 6 k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~-~l~gk~i~~--lF~e~StRTR~SFe~A~~~LG~--~~~~~~~-~ 79 (306)
||+++++||++|||..||+.|.++|+.+....+.. .|+||+|++ +|||||||||+|||+|++|||| .|++|++ .
T Consensus 1 rhli~i~Dl~~Eei~~lL~~A~~l~~~~~~~~~~~~~L~gKi~a~YilFFEPSTRTR~SFE~A~KRLGgPn~v~~~~~~~ 80 (336)
T TIGR00670 1 RHLISISDLSREEIELLLETAEELEQVASGEKKLKEALKGKIVANYILFFEPSTRTRLSFETAMKRLGGPNDVVNFSDSE 80 (336)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 96223155785569999999999986315766215866397799999986078550135889888727985456225563
Q ss_pred CCCCCCCCCHHHHHHHHHHC--CCEEEEEECC----CCHHHHHHCCC-----CCC-EECCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 00012321079999975300--1011121013----20067763012-----441-2404333-2024678765576642
Q gi|255764473|r 80 EMQLGRAETIGDTAKVLSRY--VDAIVMRTTN----HSRLLELTEYA-----TVP-VINALTD-NTHPCQIIADIMTFEE 146 (306)
Q Consensus 80 ~ss~~kgEsl~Dt~~~ls~~--~D~iviR~~~----~~~~~~~~~~~-----~vp-vINa~~~-~~HPtQaL~D~~Ti~e 146 (306)
+||++||||+.||++|++.| +|+|||||+. .++...+|+++ +|| ||||||| ++||||+|+|+|||.+
T Consensus 81 ~sS~~KGEtL~DTi~~~~~y~D~D~iViRH~~~GvCegaar~~ae~~~R~~~~vPsviNAGDG~~qHPTQ~LLDLyTi~~ 160 (336)
T TIGR00670 81 TSSVAKGETLADTIKTLSAYGDSDAIVIRHPLEGVCEGAARLAAEVSDRLGIEVPSVINAGDGSGQHPTQTLLDLYTIYE 160 (336)
T ss_pred CCCHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 41121054478899988540475569983586541346889998863110457871663687878797534788999998
Q ss_pred HCC-------CCCCCCEEEECC--CCCCCCCHHHCCCCCC-EEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 001-------336773046104--5555431010012331-257652000013210000243201332221366466306
Q gi|255764473|r 147 HRG-------SVKGKLFSWSGD--GNNILHSLIEGAARFN-YLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVK 216 (306)
Q Consensus 147 ~~g-------~l~~~~i~~vGd--~~~v~hS~i~~~~~~g-~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~ 216 (306)
.|| .++|+||+++|| ++||+||++.++++|| .++++++|+.+..|+++++..+..|.++.++..++|++.
T Consensus 161 ~fGPDnP~l~~~~Gl~iA~vGDlkygRtvhS~~~~L~~f~~~~v~l~sP~~LrmP~~~~e~~~~~G~~~~~~~~l~e~~~ 240 (336)
T TIGR00670 161 EFGPDNPALERLDGLKIALVGDLKYGRTVHSLIKALALFGNAEVYLISPEELRMPKEILEDLKAKGVKVRETESLEEVID 240 (336)
T ss_pred HHCCCCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCHHHHHHHHHHCCCEEEEEEEHHHHHC
T ss_conf 71888630322288579998431202476678899865189569986772430617889998528962899522434421
Q ss_pred CCCCC---CCCCEEECCCC--CHHHHHHCCCCCCCCHHHHHCCCCC--CEEECCCCCCCCCCCCHHHHCCCCCHHHH-HH
Q ss_conf 87332---22100000022--0133310011123368899628987--29925999874873576796799710686-87
Q gi|255764473|r 217 GAHCV---FTDTWISMNQE--FKAREEHVFQPFQVNLSLMSMAHPD--ALFMHCLPAHRGEEVINEVLDGPQSVVFD-EA 288 (306)
Q Consensus 217 ~aD~V---~~~~~~~~~~~--~~~~~~~~~~~y~i~~~~l~~a~~~--~~vmHplP~~rg~EI~~~v~d~~~s~~~~-Qa 288 (306)
.+||+ |++|.|..+.+ ...+..++...|+||.+.|+.++++ ++||||||+||++||+.+|+++|++.||+ ||
T Consensus 241 ~~DVlkiWY~tRiQkER~~~~d~~ey~~~~~~Y~i~~~~L~~~~~~~e~ivlHPlPv~RvdEI~~~vd~~~~~~~f~~Q~ 320 (336)
T TIGR00670 241 EADVLKIWYVTRIQKERFPEDDPEEYEKVRGSYGITAERLEAAKKGKEVIVLHPLPVHRVDEIDPEVDDTPHAKYFKDQA 320 (336)
T ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 57847886420011123788788999841001466288986306899368847889788566774323664467888875
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 7559999999999625
Q gi|255764473|r 289 ENRLHTQKAILLWCFG 304 (306)
Q Consensus 289 ~Ngl~vr~AiL~~~lG 304 (306)
.||++||||||..+++
T Consensus 321 ~nGV~vRMAlL~~~~~ 336 (336)
T TIGR00670 321 FNGVPVRMALLSLLLG 336 (336)
T ss_pred HCCHHHHHHHHHHHCC
T ss_conf 1568999999999629
No 13
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=100.00 E-value=0 Score=638.44 Aligned_cols=299 Identities=28% Similarity=0.421 Sum_probs=266.8
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
.+||||++.|||++||..||++|.++|..+.++...++|+||+++++|+|||||||+|||+|+++|||+++++++++||+
T Consensus 2 ~~kh~L~~~dls~~ei~~ll~~A~~lK~~~~~~~~~~~L~gk~~~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~ 81 (357)
T TIGR03316 2 REKDFILTWEWTRDELDTVLDVAFDLKRLRALNISTKLFESGLGISLFRDNSTRTRFSFASAMNLLGLHAQDLDEGKSQI 81 (357)
T ss_pred CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 98882881128999999999999999877646887755789889999738984038999999998599599978322447
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCC-----CHHHHHHCC-----------CCCCEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 232107999997530010111210132-----006776301-----------2441240433320246787655766420
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNH-----SRLLELTEY-----------ATVPVINALTDNTHPCQIIADIMTFEEH 147 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~-----~~~~~~~~~-----------~~vpvINa~~~~~HPtQaL~D~~Ti~e~ 147 (306)
+||||++||+++||+|+|+||+||..+ ..+.+++++ ++||||||+++.+||||+|+|+|||+|+
T Consensus 82 ~kGEsv~DTarvls~y~D~IviR~~~~~~~~~~~~~e~a~~~~~~~~~~~~~s~vPVINal~d~~HPtQaLaDl~Ti~e~ 161 (357)
T TIGR03316 82 GHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQEK 161 (357)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 68988799999999638889998243334037889999987655443102236898783788877836999999999998
Q ss_pred CCCCC---CCCEEEEC-------CCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHH----CCCCCCCCCCCHHH
Q ss_conf 01336---77304610-------455554310100123312576520000132100002432----01332221366466
Q gi|255764473|r 148 RGSVK---GKLFSWSG-------DGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWAR----NQGASVALFHDAVQ 213 (306)
Q Consensus 148 ~g~l~---~~~i~~vG-------d~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~----~~g~~i~~~~d~~e 213 (306)
||.++ |++|+++| +++||+||++.++++||+++++++|+++.|++++++.++ +.|.++.+++|+++
T Consensus 162 ~G~~~~l~g~~v~i~~~~~~~~g~~~~Va~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 241 (357)
T TIGR03316 162 FGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDE 241 (357)
T ss_pred HCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 48722467774899986125565153799999999997598099977842367879999999999981992899759999
Q ss_pred HCCCCCCCCCCCEEECCCCC--------------------HHHHHHCCCCCCCCHHHHHCCCC-CCEEECCCCCC-----
Q ss_conf 30687332221000000220--------------------13331001112336889962898-72992599987-----
Q gi|255764473|r 214 AVKGAHCVFTDTWISMNQEF--------------------KAREEHVFQPFQVNLSLMSMAHP-DALFMHCLPAH----- 267 (306)
Q Consensus 214 al~~aD~V~~~~~~~~~~~~--------------------~~~~~~~~~~y~i~~~~l~~a~~-~~~vmHplP~~----- 267 (306)
++++||+||||+|.||+... ......++++||+|.++|+.+++ +++||||||+|
T Consensus 242 av~~aDVvytd~W~sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~m~~a~~~~ai~MHclPa~~RGv~ 321 (357)
T TIGR03316 242 AFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVS 321 (357)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 95689999836640137888899886011056788877766656775047511699997478979699799979877888
Q ss_pred -CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -48735767967997106868775599999999996
Q gi|255764473|r 268 -RGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWC 302 (306)
Q Consensus 268 -rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~ 302 (306)
||.||+++|+|+|+|+||+||+||+|+|||||+..
T Consensus 322 ~R~~EIt~eV~d~~~S~i~~QAeNrl~~~~AvLaat 357 (357)
T TIGR03316 322 CEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIAAT 357 (357)
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 877714899967999709988750499999998529
No 14
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=0 Score=633.03 Aligned_cols=297 Identities=24% Similarity=0.327 Sum_probs=270.6
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9988877178445899999999999999996652-366654437987999942888357899998986347543333210
Q gi|255764473|r 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSE-NIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 1 ~m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~-~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~ 79 (306)
|-+++||||+++|||++||+.||++|..+++.+. +.....+|+||+++++|+|||||||+|||+|+++|||++++++.+
T Consensus 1 m~~~prH~L~l~dls~~ei~~ll~~A~~~~~~~~~~~~~~~~L~gk~la~lF~kpSTRTR~SFE~a~~~LGg~~i~l~~~ 80 (310)
T PRK13814 1 MNELPLHLLNMRSLTRDHIEKLIQRANYFLTQGMEKNSVFETLKGHVVANLFFEPSTRTRNSFEIAAKRLGAMVLNPNLK 80 (310)
T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99888443753219999999999999999986641477776679998999984687324999999999849980576644
Q ss_pred CCCCCCCCCHHHHHHHHHHC-CCEEEEEECCCCHHHHHHC-CCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 00012321079999975300-1011121013200677630-124412404333-20246787655766420013367730
Q gi|255764473|r 80 EMQLGRAETIGDTAKVLSRY-VDAIVMRTTNHSRLLELTE-YATVPVINALTD-NTHPCQIIADIMTFEEHRGSVKGKLF 156 (306)
Q Consensus 80 ~ss~~kgEsl~Dt~~~ls~~-~D~iviR~~~~~~~~~~~~-~~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~g~l~~~~i 156 (306)
+||++||||++||+++|+.| +|++|+||++++.++++++ ++++||||||++ .+||||+|+|+|||+|++|+++|++|
T Consensus 81 ~s~l~kgEsi~DTa~vls~~~~d~iv~R~~~~~~~~~la~~~s~~pvINag~~~~~HP~QaLaDl~Ti~E~~g~~~~l~i 160 (310)
T PRK13814 81 ISAISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCV 160 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 35455797789999998741856999976874489999971788874768789877716999989999998397135668
Q ss_pred EEECC--CCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf 46104--55554310100123312-5765200001321000024320133222136646630687332221000000220
Q gi|255764473|r 157 SWSGD--GNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEF 233 (306)
Q Consensus 157 ~~vGd--~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~ 233 (306)
+|||| +|||+||++.++.++|+ ++++++|..+.|+. ..+..+..++++.+++.++|+||+++|+.++.+.
T Consensus 161 a~vGD~~~~~va~Sl~~~~~~~g~~~~~~~~P~~~~p~~-------~~~~~~~~~~~~~~a~~~aDvi~t~~~~~e~~~~ 233 (310)
T PRK13814 161 TIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDK-------VGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDN 233 (310)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCHH-------HCCCCEEEEECCHHHHCCCCEEEECCCHHHHHCC
T ss_conf 996774246999999999997599835852800219166-------7088549981416765479879977306533032
Q ss_pred HHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 13331001112336889962898729925999874873576796799710686877559999999999625
Q gi|255764473|r 234 KAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 234 ~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
..+...+..+||||.++|+.+++|++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+++|+
T Consensus 234 ~~~~~~~~~~y~v~~~~l~~a~~dai~MHcLPa~Rg~EIt~eV~d~~~S~v~~QAeNrl~~q~AlL~~lL~ 304 (310)
T PRK13814 234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLELFLL 304 (310)
T ss_pred HHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55399886526718999961898989989898989986587773698675999997239999999999972
No 15
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=100.00 E-value=0 Score=619.17 Aligned_cols=297 Identities=34% Similarity=0.555 Sum_probs=260.3
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM 81 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s 81 (306)
|+ +||||++.||+++||+.||++|..+|+.+ ..+.|+||+++++|||||||||+|||+|+++|||+++++++++|
T Consensus 1 m~-mkhllsi~dls~~ei~~ll~~A~~~k~~~----~~~~L~gk~v~~lF~epSTRTR~SFE~A~~rLGg~~i~l~~~~s 75 (335)
T PRK04523 1 MS-LKHFLNTQDWSRAELDALLTQAAAFKRNK----LGHALKGKSIALVFFNPSLRTRTSFELGAFQLGGHAIVLQPGKD 75 (335)
T ss_pred CC-CCCCCCHHHCCHHHHHHHHHHHHHHHCCC----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99-55417611189999999999999997089----98778999899997379830499999999986998898468776
Q ss_pred C------------CCCCCCHHHHHHHHHHCCCEEEEEECCC----------CHHHHHHCCCCCCEECCCCCCCHHHHHHH
Q ss_conf 0------------1232107999997530010111210132----------00677630124412404333202467876
Q gi|255764473|r 82 Q------------LGRAETIGDTAKVLSRYVDAIVMRTTNH----------SRLLELTEYATVPVINALTDNTHPCQIIA 139 (306)
Q Consensus 82 s------------~~kgEsl~Dt~~~ls~~~D~iviR~~~~----------~~~~~~~~~~~vpvINa~~~~~HPtQaL~ 139 (306)
+ ..||||++||+++||+|+|+||+|++.+ ..+.++++++++||||||+ .+||||+|+
T Consensus 76 s~~~~~~~g~~~~~~~~Esl~Dt~~vls~y~D~iviR~~~~~~~~~~~~~~~~~~~~a~~s~vPVIN~g~-~~HPtQaL~ 154 (335)
T PRK04523 76 AWPIEFNLGTVMDGDTEEHIAEVARVLSRYVDLIGVRAFPKFVDWEEDRQDPVLNSFAKYSTVPVINMET-ITHPCQELA 154 (335)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC-CCCCHHHHH
T ss_conf 4322245553225777766999999998439899993253234200001368999999866887306888-888489999
Q ss_pred HHHHHHHHCCC-CCCCCEE--EECC----CCCCCCCHHHCCCCCCEEEEEECHH-CCCCCCCCHHHH----HCCCCCCCC
Q ss_conf 55766420013-3677304--6104----5555431010012331257652000-013210000243----201332221
Q gi|255764473|r 140 DIMTFEEHRGS-VKGKLFS--WSGD----GNNILHSLIEGAARFNYLLNIATPI-GSEPRNEYLNWA----RNQGASVAL 207 (306)
Q Consensus 140 D~~Ti~e~~g~-l~~~~i~--~vGd----~~~v~hS~i~~~~~~g~~v~~~~P~-~~~~~~~~~~~~----~~~g~~i~~ 207 (306)
|+|||+|++|. ++|++++ |+|| ++||+||++.++.+||+++++++|. ++.+++.+.+++ +..|.++.+
T Consensus 155 Dl~Ti~e~~g~~~~~~~~~i~~~~~~~~~~~~va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~v~~ 234 (335)
T PRK04523 155 HALALQEHFGTPLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSVQV 234 (335)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999998386336987999985147744146989999999974990899817854679989999999999972985999
Q ss_pred CCCHHHHCCCCCCCCCCCEEECCCC----CHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCH
Q ss_conf 3664663068733222100000022----013331001112336889962898729925999874873576796799710
Q gi|255764473|r 208 FHDAVQAVKGAHCVFTDTWISMNQE----FKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSV 283 (306)
Q Consensus 208 ~~d~~eal~~aD~V~~~~~~~~~~~----~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~ 283 (306)
++|+++++++||+||+++|++|... .....+.++++|++|.++++.++ |++||||||+|||+||+++|+|+|+|+
T Consensus 235 ~~d~~~al~~aDvvyt~~w~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-d~i~MHplP~~Rg~Ei~~~V~d~p~s~ 313 (335)
T PRK04523 235 SHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKATDAVMDSPNCI 313 (335)
T ss_pred ECCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCC-CCEEECCCCCCCCCCCCHHHHCCCCCH
T ss_conf 8189999732324666666311211561025999998763782499971799-979989999999880278885799876
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6868775599999999996255
Q gi|255764473|r 284 VFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 284 ~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
||+||+||+|+|||||+|+||-
T Consensus 314 v~~Qa~Ngv~~rmAiL~~ll~~ 335 (335)
T PRK04523 314 AIDEAENRLHVQKAIMAALASQ 335 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999873099999999998486
No 16
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=617.22 Aligned_cols=302 Identities=31% Similarity=0.443 Sum_probs=274.4
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM 81 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s 81 (306)
+-++||+|++.||+++|+..||+.|.+++...........|+||+++++|||||||||+|||+|++||||+|++++.++|
T Consensus 4 ~~~~rhlisi~dls~~ei~~ll~~A~~~~~~~~~~~~~~~l~gk~v~~lFFEpSTRTr~SFE~A~krLG~~Vv~~~~~~s 83 (316)
T COG0540 4 PFKMRHLISIEDLSREELELLLDTADEFKAVARAEKKLDLLKGKVVANLFFEPSTRTRLSFETAMKRLGADVVNFSDSES 83 (316)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 66666250167589999999999999998665024775021276799998458773066499999972993896458766
Q ss_pred CCCCCCCHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCCCC-CEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 012321079999975300-10111210132006776301244-12404333-2024678765576642001336773046
Q gi|255764473|r 82 QLGRAETIGDTAKVLSRY-VDAIVMRTTNHSRLLELTEYATV-PVINALTD-NTHPCQIIADIMTFEEHRGSVKGKLFSW 158 (306)
Q Consensus 82 s~~kgEsl~Dt~~~ls~~-~D~iviR~~~~~~~~~~~~~~~v-pvINa~~~-~~HPtQaL~D~~Ti~e~~g~l~~~~i~~ 158 (306)
|.+||||+.||++++++| +|+||+||+.+++...+++++++ |||||||| ++||||+|+|+|||+|.+|.++|++|++
T Consensus 84 Ss~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iai 163 (316)
T COG0540 84 SSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAI 163 (316)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 54466109999999986079989994764148999987358885478888999895289999999999848767947999
Q ss_pred ECC--CCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEE--CCCCCH
Q ss_conf 104--5555431010012331257652000013210000243201332221366466306873322210000--002201
Q gi|255764473|r 159 SGD--GNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWIS--MNQEFK 234 (306)
Q Consensus 159 vGd--~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~--~~~~~~ 234 (306)
||| ++||+||++.++++||.++++++|+.+.||.++++.....|..+.+.+..+++++++|++|+.|.|. |.++..
T Consensus 164 vGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~~~ 243 (316)
T COG0540 164 VGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDPEE 243 (316)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHHHCCCCCC
T ss_conf 82544118888779999981987999886586794657888762485279814666642337789852234754478632
Q ss_pred HH-HHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33-310011123368899628987299259998748735767967997106868775599999999996255
Q gi|255764473|r 235 AR-EEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 235 ~~-~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
.. .++|+..|+++.+.+ +|++++||||||+||++||+++|+++|+|+||+||+||+++|||||+.++|-
T Consensus 244 ~s~~~~y~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~ 313 (316)
T COG0540 244 YSKVKEYYKLYGLTLERL--AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGG 313 (316)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 588888999978899962--6899689788875678757665644617789999962799999999998533
No 17
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=100.00 E-value=0 Score=599.84 Aligned_cols=301 Identities=25% Similarity=0.349 Sum_probs=270.4
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88771784458999999999999999966523666544379879999428883578999989863475433332100001
Q gi|255764473|r 4 YPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQL 83 (306)
Q Consensus 4 ~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~ 83 (306)
+.||||++.|||++||..||++|.++|..++.+...++|+||+++++|++||||||+|||+|+.+|||+++++++++||+
T Consensus 19 ~grdfL~l~D~t~eEi~~lldlA~~LK~~k~~g~~~~~l~gk~~~~IFeK~STRTR~SFEva~~~LGg~~~yL~p~~~Ql 98 (395)
T PRK07200 19 HEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSGLGISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQI 98 (395)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 68877720139999999999999999999976997744589738999706983468999999997799769738987627
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEE-----ECCCCHHHHHHCCC-------C----CCEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 23210799999753001011121-----01320067763012-------4----41240433320246787655766420
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMR-----TTNHSRLLELTEYA-------T----VPVINALTDNTHPCQIIADIMTFEEH 147 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR-----~~~~~~~~~~~~~~-------~----vpvINa~~~~~HPtQaL~D~~Ti~e~ 147 (306)
++|||++||+|+||+|+|+|++| +..+....++++++ . +|||||.++.+||||+|+|++||+|+
T Consensus 99 G~gEsi~DTArVLsR~~D~I~~R~~~~~g~g~~~~~e~a~~~~~~~~~~~vp~~~pViN~LTD~~HPtQ~LADllTi~E~ 178 (395)
T PRK07200 99 AHGETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREH 178 (395)
T ss_pred CCCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 79988899999998550258873033345414899999999988887346765551232555577858999999999998
Q ss_pred CCCC---CCCCEEEE-------CCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHH----CCCCCCCCCCCHHH
Q ss_conf 0133---67730461-------0455554310100123312576520000132100002432----01332221366466
Q gi|255764473|r 148 RGSV---KGKLFSWS-------GDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWAR----NQGASVALFHDAVQ 213 (306)
Q Consensus 148 ~g~l---~~~~i~~v-------Gd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~----~~g~~i~~~~d~~e 213 (306)
+|.+ +|++++++ ||.+||+||++.++++||+++++++|++|+|.+++++.++ ..|.++++++|+.+
T Consensus 179 ~G~l~~lkg~k~~~~~~y~~~~g~~~nv~~sl~~~~a~lGmdv~ia~P~gy~p~~~~v~~A~~~A~~sG~~i~iT~D~~e 258 (395)
T PRK07200 179 FGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEE 258 (395)
T ss_pred HCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCHHH
T ss_conf 18732457863899974146677422689999999977497499978987798989999999999983998999679999
Q ss_pred HCCCCCCCCCCCEEECC---CCCHH-----------------HHHHCCCCCCCCHHHHHCC-CCCCEEECCCCCC-----
Q ss_conf 30687332221000000---22013-----------------3310011123368899628-9872992599987-----
Q gi|255764473|r 214 AVKGAHCVFTDTWISMN---QEFKA-----------------REEHVFQPFQVNLSLMSMA-HPDALFMHCLPAH----- 267 (306)
Q Consensus 214 al~~aD~V~~~~~~~~~---~~~~~-----------------~~~~~~~~y~i~~~~l~~a-~~~~~vmHplP~~----- 267 (306)
|+++||+||||+|.||. +..+. .....+++||||.++|+++ +++++||||||++
T Consensus 259 Av~gADvIYTDvW~sm~~~~e~~e~l~~~~~~~~~~~e~e~~~r~~~~~~yqVn~~lm~~a~~~~aifMHCLPA~~~~~~ 338 (395)
T PRK07200 259 AFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTKDGEALYMHCLPADISGVS 338 (395)
T ss_pred HHCCCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 95799999727877765443106653123102344567777655304789546799998427998599836899876667
Q ss_pred -CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -4873576796799710686877559999999999625
Q gi|255764473|r 268 -RGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 268 -rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
||.||+++|+|+|+|++|+|||||+|+++|||..+++
T Consensus 339 ~r~~EVTdeVfd~p~SvVFdEAENRlHtiKAvMvat~~ 376 (395)
T PRK07200 339 CKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKY 376 (395)
T ss_pred CCCCEECHHHHCCCCCCEECHHCCHHHHHHHHHHHHHC
T ss_conf 76760127540577762433121228999999999530
No 18
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=586.85 Aligned_cols=300 Identities=25% Similarity=0.400 Sum_probs=281.3
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCC
Q ss_conf 87717844589999999999999999665236665443798799994288835789999898634754333321-00001
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSG-SEMQL 83 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~-~~ss~ 83 (306)
.+|+||+++|+++++..||..|+++....++......|+||+++++|||||||||+|||+|+++|||+|+.++. ..||+
T Consensus 88 ~~HiLSv~qf~R~~l~~lF~vA~~m~~~a~r~~~~~vL~GkILa~LFfEpSTRTr~SFe~Am~RLGG~Vi~~~~~~~SS~ 167 (430)
T PRK11891 88 KPQLLSVDQFSRDSVEALFRVADMMQPIARRQKISRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSM 167 (430)
T ss_pred CCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 85177455428989999999999988988662331131475788862378675066899999977981836788874642
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCC-CCHHHHHHHHHHHHHHHCC----CCCCCCEEE
Q ss_conf 23210799999753001011121013200677630124412404333-2024678765576642001----336773046
Q gi|255764473|r 84 GRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTD-NTHPCQIIADIMTFEEHRG----SVKGKLFSW 158 (306)
Q Consensus 84 ~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~g----~l~~~~i~~ 158 (306)
.||||++||++++++|+|+||+||+..+....+++++.+|||||||| ++||||||+|+|||++.+| .++|++|++
T Consensus 168 ~KGEsl~DT~r~l~~Y~D~iV~RHp~~Gs~~~aa~~s~vPVINaGDG~~eHPTQaLLDl~TI~~e~g~~~~~idGl~Ial 247 (430)
T PRK11891 168 AKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIAL 247 (430)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 37777999999996269899991898358999986479873635788666832677777889987532235557857998
Q ss_pred ECC--CCCCCCCHHHCCCCC-CEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH
Q ss_conf 104--555543101001233-12576520000132100002432013322213664663068733222100000022013
Q gi|255764473|r 159 SGD--GNNILHSLIEGAARF-NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA 235 (306)
Q Consensus 159 vGd--~~~v~hS~i~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~ 235 (306)
||| ++|++||++.++++| +.++++++|+++.+|+++.+.....|..+.+++++++++.++|++|+++.|...... .
T Consensus 248 vGDLKyGRTVHSL~klLs~y~~v~~~lVSP~~L~mP~~i~~~l~~~g~~~~e~~~L~e~i~~~DVlY~TRIQkERF~~-e 326 (430)
T PRK11891 248 VGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVDQISTNGHVIEQTDDLAAGLRGADVVYATRIQKERFTD-E 326 (430)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEECCCCCCCCCC-H
T ss_conf 645456600989999998546946999892130798899999997798699937875740347989857733144897-6
Q ss_pred HHHHCCCCCCCCHHHHH-CCCCCCEEECCCCCCC---CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33100111233688996-2898729925999874---8735767967997106868775599999999996255
Q gi|255764473|r 236 REEHVFQPFQVNLSLMS-MAHPDALFMHCLPAHR---GEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 236 ~~~~~~~~y~i~~~~l~-~a~~~~~vmHplP~~r---g~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
++..+...|.++.+.+. .+|+|++||||||.|+ ..||+.||+++|++.||+|++||+|+|||||+.+||+
T Consensus 327 e~~~~~~~~~l~~~~l~~~aK~~~iIMHPLPRnsr~~vnEIs~eVD~dPRAaYFRQa~nGv~VRMALLalvLGV 400 (430)
T PRK11891 327 SFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 400 (430)
T ss_pred HHHHHHCCEEECHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 78887478778799998526999788799898988887817752458961038888751899999999998293
No 19
>KOG1504 consensus
Probab=100.00 E-value=0 Score=536.56 Aligned_cols=301 Identities=44% Similarity=0.693 Sum_probs=283.6
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC-CCC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 888771784458999999999999999966523-666-544379879999428883578999989863475433332100
Q gi|255764473|r 3 TYPKHFADLSNISSSNLSCIIEVAKKIKNSSEN-IFE-NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSE 80 (306)
Q Consensus 3 ~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~-~~~-~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ 80 (306)
+..||||+|+||+.++|..++++|.++|..-++ +.. ..+|+||+++|+|.++|||||+|||.|..-||||+.+++..+
T Consensus 37 s~~r~llsikd~s~eeik~ll~rase~K~~~Kqn~e~n~~~l~gks~amIF~KrStRTRvStEt~~~~lGg~~mfLg~~D 116 (346)
T KOG1504 37 SDLRDLLSIKDFSTEEIKTLLDRASEVKALLKQNGERNYLPLKGKSMAMIFAKRSTRTRVSTETGFFLLGGHPMFLGKND 116 (346)
T ss_pred CCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHCCCCEEECCHH
T ss_conf 56455053014776899999988899999998468534555567546788862665157750012454278520205312
Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEE
Q ss_conf 0012321079999975300101112101320067763012441240433320246787655766420013-367730461
Q gi|255764473|r 81 MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGS-VKGKLFSWS 159 (306)
Q Consensus 81 ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~-l~~~~i~~v 159 (306)
.++++.||+.||+|++|.|+|+|+.|...|..+..+++++++||||+++++.||+|+|+|++||.|++|. ++|+|++|+
T Consensus 117 IqlGvnEs~~DtarVlSsm~d~I~ARV~khsDi~tlak~sSvPiINgL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawi 196 (346)
T KOG1504 117 IQLGVNESLYDTARVLSSMVDIIMARVNKHSDILTLAKYSSVPIINGLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWI 196 (346)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 10244222676999999988999998762335999864268863324202467489999999999987343455079997
Q ss_pred CCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHH----HCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHH
Q ss_conf 045555431010012331257652000013210000243----2013322213664663068733222100000022013
Q gi|255764473|r 160 GDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWA----RNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKA 235 (306)
Q Consensus 160 Gd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~----~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~ 235 (306)
||+|||.|||+.+++++|+.+.+++|+++.|+.+.+..+ +.+|.++.+++|+.+|..++|+++||.|.||+++++.
T Consensus 197 GD~NNvlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDtwiSMGqe~ek 276 (346)
T KOG1504 197 GDGNNVLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDTWISMGQEDEK 276 (346)
T ss_pred CCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHCCHHHHH
T ss_conf 26508899999986331437885289998856689999999987058778974582886348867997314442637799
Q ss_pred HHH-HCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 331-001112336889962898729925999874873576796799710686877559999999999625
Q gi|255764473|r 236 REE-HVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFG 304 (306)
Q Consensus 236 ~~~-~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG 304 (306)
+.+ +.|+.||||.++++.+++++.||||||+++ +|++++|+.+|+|++|+|||||+|++||++..+||
T Consensus 277 earlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~-eEVsdeVfy~~~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504 277 EARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHP-EEVSDEVFYGPYSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred HHHHHHHCCCEEHHHHHHHHCCCCEEEECCCCCH-HHCCCCEEECCCEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 9999862372230899964178745762168880-22367526545405551333057899999999843
No 20
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=0 Score=402.84 Aligned_cols=302 Identities=20% Similarity=0.243 Sum_probs=253.6
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 877178445899999999999999996652366654---437987999942888357899998986347543333-2100
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENK---PLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFL-SGSE 80 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~---~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~-~~~~ 80 (306)
.|.+.-++||+.++-..|++.++++|..|++...-. .-++-.|..+|||||||||+||+.|+++|||.++.+ +..+
T Consensus 7 grsl~vi~d~sv~eq~fly~~tk~lk~~~~~~~d~~ef~ik~d~~iyivFfEPSTRTRlSFesAa~~lgG~vV~~~~~~s 86 (524)
T PRK13376 7 GRSLTVIEDLSVEEQLFLYEKTKELKQKWYNKEDVSEFQIKKDVGIYIVFVEPSTRTKESFINAAKFHKNAKVNIFDSEH 86 (524)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 65035430356588899999899999986340332120451544289999668773077799999984897675337665
Q ss_pred CCCCCCCCHHHHHHHHHHCCC--EEEEEECCCCH-------HHHHHCCCCC---CEECCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 001232107999997530010--11121013200-------6776301244---12404333-20246787655766420
Q gi|255764473|r 81 MQLGRAETIGDTAKVLSRYVD--AIVMRTTNHSR-------LLELTEYATV---PVINALTD-NTHPCQIIADIMTFEEH 147 (306)
Q Consensus 81 ss~~kgEsl~Dt~~~ls~~~D--~iviR~~~~~~-------~~~~~~~~~v---pvINa~~~-~~HPtQaL~D~~Ti~e~ 147 (306)
||++||||+.||++++++|+| +||+||+..++ +.++|....+ |||||||| ++||||+|+|+|||+|.
T Consensus 87 SS~~KGESL~DTirvlsgYsDasIIVmRHP~eGaaRll~e~v~efA~~~~v~vp~~INAGDG~nEHPTQaLLDLfTI~ee 166 (524)
T PRK13376 87 SSFNKQESYVDTFNMLTGYSDYSIFIVRTRLEGVCRLLERKVSEFASRHGIERPAFINAGDGKHEHPTQELLDEFTFLEQ 166 (524)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 52015850999999986336762799947887721456788998886448987853778889888832899999999998
Q ss_pred CC-CCCCCCEEEECC--CCCCCCCHHHCCCCC-CEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCC--
Q ss_conf 01-336773046104--555543101001233-125765200001321000024320133222136646630687332--
Q gi|255764473|r 148 RG-SVKGKLFSWSGD--GNNILHSLIEGAARF-NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCV-- 221 (306)
Q Consensus 148 ~g-~l~~~~i~~vGd--~~~v~hS~i~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V-- 221 (306)
.| .+++++|+.||| ++|++||++.++++| +.++.+++|+.+..|+.+++..+.+|..+.++.+.+|.++..|+-
T Consensus 167 ~g~~~~~I~IAlVGDLK~GRTVHSL~~aL~~fkNV~~~LISPeEL~MP~~yiekmk~~G~evr~f~si~eyl~~~~~a~i 246 (524)
T PRK13376 167 NNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELQMPEHYIEKMKKNGFEVRIFSSIEEYLKQKDVAKI 246 (524)
T ss_pred HCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCHHE
T ss_conf 38777855999974434571188899888762483899988788069889999998669148851049998704761124
Q ss_pred -CCCCE--EECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCCCHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf -22100--0000220133310011123368899628987299259998748-7357679679971068687755999999
Q gi|255764473|r 222 -FTDTW--ISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRG-EEVINEVLDGPQSVVFDEAENRLHTQKA 297 (306)
Q Consensus 222 -~~~~~--~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg-~EI~~~v~d~~~s~~~~Qa~Ngl~vr~A 297 (306)
|-++. .+|++.-...+.-..+.--.+.+.|++.+.++.|.||||.++- -+|...+++.|-.-.=+|+.||.|+|+-
T Consensus 247 wyftrlqlermge~ilek~~~lr~~vtf~k~~l~~~pe~~kfyhplpr~~~~ptip~fld~~plngwe~qa~ngy~~r~v 326 (524)
T PRK13376 247 WYFTRLQLERMGEDILEKEHILRKSVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIV 326 (524)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEHHHH
T ss_conf 77508889877788888899987652027878753636660036688555689876423578887155553055446999
Q ss_pred HHHHHHCCC
Q ss_conf 999962559
Q gi|255764473|r 298 ILLWCFGII 306 (306)
Q Consensus 298 iL~~~lG~~ 306 (306)
+|.++-|.+
T Consensus 327 llsmlgga~ 335 (524)
T PRK13376 327 LLSMLGGAL 335 (524)
T ss_pred HHHHHCCCC
T ss_conf 999854642
No 21
>pfam02729 OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain.
Probab=100.00 E-value=0 Score=339.95 Aligned_cols=140 Identities=46% Similarity=0.762 Sum_probs=135.3
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 77178445899999999999999996652366654437987999942888357899998986347543333210000123
Q gi|255764473|r 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGR 85 (306)
Q Consensus 6 k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~k 85 (306)
||||++.||++++|..|+++|..+|+.+.++. ++|+||+++++|+|||||||+|||.|+++|||+++++++.+||++|
T Consensus 1 kh~l~i~dls~~ei~~ll~~A~~~k~~~~~~~--~~l~gk~i~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~k 78 (140)
T pfam02729 1 RHLLSLDDLSREELEALLDLAAELKKKPRSGS--PLLRGKTLALLFFEPSTRTRLSFEAAAKRLGGHVIYLDPGSSSLGK 78 (140)
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEEEEEECCCCCCCEEEHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 99786022599999999999999984232167--5578988999853788741122076898669846873633355778
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21079999975300101112101320067763012441240433320246787655766420
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEH 147 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~ 147 (306)
|||++||+++|++|+|++|+||++++.+.++++++++||||||++.+||||+|+|+|||+|+
T Consensus 79 gEsi~Dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~ 140 (140)
T pfam02729 79 GESLKDTARVLSRYVDAIVIRHPSHGALEELAKYSSVPVINAGDDHEHPTQALADLLTIREH 140 (140)
T ss_pred CCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 84799999999985999999899611699999868978898999998748999999998609
No 22
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=100.00 E-value=8.9e-41 Score=287.39 Aligned_cols=148 Identities=41% Similarity=0.659 Sum_probs=133.2
Q ss_pred CCCCEEEECCC--CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHC-----CCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 67730461045--55543101001233125765200001321000024320-----133222136646630687332221
Q gi|255764473|r 152 KGKLFSWSGDG--NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARN-----QGASVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 152 ~~~~i~~vGd~--~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~-----~g~~i~~~~d~~eal~~aD~V~~~ 224 (306)
+|++|+||||. |||+||++.++++||+++++++|+++.|+++..+.++. .+..+.+++|+.++++++|+|||+
T Consensus 1 ~g~~i~~vGD~~~~rv~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvyt~ 80 (155)
T pfam00185 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVYTD 80 (155)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEE
T ss_conf 99899998378727499999999998499899987852388889999999998862897499984999984539999997
Q ss_pred CEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000000220133310011123368899628987299259998748735767967997106868775599999999996
Q gi|255764473|r 225 TWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWC 302 (306)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~ 302 (306)
+|+.... ...++++++||||.++|++++++++||||||+|||.||+++|+++|+|+||+||+||+|+|||||+|+
T Consensus 81 ~wq~e~~---~~~~~~~~~y~v~~~ll~~~~~~~i~mH~LP~~R~~Ei~~~V~~~p~s~v~~Qa~Nr~~~r~AlL~~l 155 (155)
T pfam00185 81 RWQKERE---ERLEEFKPDYQVTAELLKKAKPDAIVMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLALL 155 (155)
T ss_pred EEEHHHH---HHHHHCCCCCEECHHHHHHCCCCCEEECCCCCCCCEEECHHHHCCCCCHHHHHHHHCHHHHHHHHHHC
T ss_conf 6541055---56764176947999999614899489668776668196577855874689999983899999999769
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.55 E-value=0.00051 Score=46.56 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=88.9
Q ss_pred HHHCCCCCCEECC-CCCC-CHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCC
Q ss_conf 7630124412404-3332-0246787655766420013-36773046104555543101001233125765200001321
Q gi|255764473|r 115 ELTEYATVPVINA-LTDN-THPCQIIADIMTFEEHRGS-VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPR 191 (306)
Q Consensus 115 ~~~~~~~vpvINa-~~~~-~HPtQaL~D~~Ti~e~~g~-l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~ 191 (306)
+..+...|+|.|| |++. +=---+++=++.+.+..|. +.|+++.++|-++ |..-....+..||+++..+.|....
T Consensus 75 ~~l~~~gI~v~naPG~Na~sVaEyvl~~ll~la~~~g~~l~gktvGIIG~G~-IG~~va~~l~afG~~vl~~DP~~~~-- 151 (379)
T PRK00257 75 DYFAEAGITWSNAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGIVGVGH-VGGRLVRVLRGLGWKVLVCDPPRQE-- 151 (379)
T ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCHHHH--
T ss_conf 9998699789969987779999999999999998508665198799977167-9999999999779989997845766--
Q ss_pred CCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 00002432013322213664663068733222100000022013331001112336889962898729925999874873
Q gi|255764473|r 192 NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEE 271 (306)
Q Consensus 192 ~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~E 271 (306)
.. ....+.++++.++.+|+|.--+ .+..+ ..+-...-+|.+.++..++++++.-+. ||.=
T Consensus 152 --------~~--~~~~~~sleell~~sDiIslHv--PLt~~-----g~~~T~~Li~~~~L~~mk~~aiLINts---RG~V 211 (379)
T PRK00257 152 --------AE--GDGDFVSLERILEECDIISLHT--PLTKE-----GEHPTWHLLDEAFLASLRPGAWLINAS---RGAV 211 (379)
T ss_pred --------HH--CCCCEECHHHHHHHCCEEEEEC--CCCCC-----CCCCCCCCCCHHHHHHCCCCCEEEECC---CCHH
T ss_conf --------43--3860334999987499999925--77778-----875320471999996079980999889---7300
Q ss_pred CCHHHH
Q ss_conf 576796
Q gi|255764473|r 272 VINEVL 277 (306)
Q Consensus 272 I~~~v~ 277 (306)
|+.+.+
T Consensus 212 VDe~AL 217 (379)
T PRK00257 212 VDNQAL 217 (379)
T ss_pred CCHHHH
T ss_conf 199999
No 24
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.73 E-value=0.034 Score=34.60 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=107.0
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1784458999999999999999966523666544379879999428883578999-989863475433332100001232
Q gi|255764473|r 8 FADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSF-EVAMKHLGGDTIFLSGSEMQLGRA 86 (306)
Q Consensus 8 ~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SF-e~A~~~LG~~~~~~~~~~ss~~kg 86 (306)
+|+=+.+.++--..+-+...+++. +......| .+.++=..|+.++.... +.+|.++|..+..+.-.+. . ..
T Consensus 5 ildGk~iA~~i~~~l~~~v~~~~~---~~~~~P~L---avilvg~d~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~-~-s~ 76 (288)
T PRK10792 5 IIDGKTIAQQVRSEVAQKVQARIA---AGLRAPGL---AVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPET-T-SE 76 (288)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHH---CCCCCCCE---EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-C-CH
T ss_conf 725699999999999999999997---38999857---9999589844799999999999975997999866889-9-99
Q ss_pred CCHHHHHHHHHH--CCCEEEEEECC--C---CH-HHHHHCCCCC---CEECCC-----CCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 107999997530--01011121013--2---00-6776301244---124043-----3320246787655766420013
Q gi|255764473|r 87 ETIGDTAKVLSR--YVDAIVMRTTN--H---SR-LLELTEYATV---PVINAL-----TDNTHPCQIIADIMTFEEHRGS 150 (306)
Q Consensus 87 Esl~Dt~~~ls~--~~D~iviR~~~--~---~~-~~~~~~~~~v---pvINa~-----~~~~HPtQaL~D~~Ti~e~~g~ 150 (306)
|.+.+.++-|+. -+|+|.+-.|- + .. +..+.-..++ .-.|.| .....||-+++=+.-+.++.-.
T Consensus 77 ~el~~~I~~LN~d~~V~GIiVQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~G~L~~~~~~~~PcTp~av~~lL~~y~i~ 156 (288)
T PRK10792 77 AELLALIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNID 156 (288)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999996799878637836899885779998514988898879988998770699866787199999999974756
Q ss_pred CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 3677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 151 VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 151 l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
++|++++++|..+-|..-+..++..-|+.+++|.-. +.|+.+..+.||+|.+
T Consensus 157 ~~Gk~vvVvGrS~iVGkPla~lL~~~~atVTichs~---------------------T~nl~~~~~~ADIvIs 208 (288)
T PRK10792 157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---------------------TKNLRHHVENADLLIV 208 (288)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHHHCCEEEE
T ss_conf 378889995676634389999998669959862578---------------------8788999985789764
No 25
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.62 E-value=0.011 Score=37.74 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=89.0
Q ss_pred HHHHCCCCCCEECCCCCCCHHHH--HHHHHHHHHH-----------------HCC--CCCCCCEEEECCCCCCCCCHHHC
Q ss_conf 77630124412404333202467--8765576642-----------------001--33677304610455554310100
Q gi|255764473|r 114 LELTEYATVPVINALTDNTHPCQ--IIADIMTFEE-----------------HRG--SVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 114 ~~~~~~~~vpvINa~~~~~HPtQ--aL~D~~Ti~e-----------------~~g--~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
.+.+....++|.|+.+.+..+.. +++=++.+.+ .+. .+.|+++.++|-+ ++..-....
T Consensus 82 ~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G-~IG~~va~~ 160 (324)
T COG0111 82 LEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLG-RIGRAVAKR 160 (324)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC-HHHHHHHHH
T ss_conf 3553137437996798653769999999999996056477899872867523566510169889998987-899999999
Q ss_pred CCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 12331257652000013210000243201332221366466306873322210000002201333100111233688996
Q gi|255764473|r 173 AARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMS 252 (306)
Q Consensus 173 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~ 252 (306)
+..||+++....|..-.... .. ..+....++++.+..+|+|..- ....++ ..-.+|.+.++
T Consensus 161 l~afgm~v~~~d~~~~~~~~------~~--~~~~~~~~Ld~lL~~aDiv~lh--~PlT~e---------T~g~i~~~~~a 221 (324)
T COG0111 161 LKAFGMKVIGYDPYSPRERA------GV--DGVVGVDSLDELLAEADILTLH--LPLTPE---------TRGLINAEELA 221 (324)
T ss_pred HHHCCCEEEEECCCCCCCCC------CC--CCCEECCCHHHHHHHCCEEEEC--CCCCCH---------HHCCCCHHHHH
T ss_conf 98679869998898860001------23--5631102699998769999983--899812---------22137999994
Q ss_pred CCCCCCEEECCCCCCCCCCCCHHH
Q ss_conf 289872992599987487357679
Q gi|255764473|r 253 MAHPDALFMHCLPAHRGEEVINEV 276 (306)
Q Consensus 253 ~a~~~~~vmHplP~~rg~EI~~~v 276 (306)
++|+.+++..|. ||.=|+.+.
T Consensus 222 ~MK~gailIN~a---RG~vVde~a 242 (324)
T COG0111 222 KMKPGAILINAA---RGGVVDEDA 242 (324)
T ss_pred CCCCCCEEEECC---CCCEECHHH
T ss_conf 489981999888---752035899
No 26
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.51 E-value=0.074 Score=32.41 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=71.6
Q ss_pred HHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHHC-------------------C-CCCCCCEEEECCCCCCCCCHHH
Q ss_conf 7763012441240433320246--7876557664200-------------------1-3367730461045555431010
Q gi|255764473|r 114 LELTEYATVPVINALTDNTHPC--QIIADIMTFEEHR-------------------G-SVKGKLFSWSGDGNNILHSLIE 171 (306)
Q Consensus 114 ~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~~-------------------g-~l~~~~i~~vGd~~~v~hS~i~ 171 (306)
.+.++...|+|.|.-+...... .+++=++.+.++. | .+.++++.++|- +|+......
T Consensus 85 l~~a~~~gI~V~n~P~~~~~aVAE~ai~liL~l~R~i~~~~~~~~~~~~~w~~~~~g~~l~~ktvGIiG~-G~IG~~vak 163 (332)
T PRK08605 85 LELANKYNIIISNVPSYSPESIAEFTVTQAINLVRHFNLIQTKVREHDFRWEPPILSRSIKDLKVAVIGT-GRIGLAVAK 163 (332)
T ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEE-EHHHHHHHH
T ss_conf 9999979998995998684899999999999998565999999982587647765754503778999974-368899999
Q ss_pred C-CCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHH
Q ss_conf 0-123312576520000132100002432013322213664663068733222100000022013331001112336889
Q gi|255764473|r 172 G-AARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSL 250 (306)
Q Consensus 172 ~-~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~ 250 (306)
. +..||+++....|. +.+.. .. .+.+..++++.++.+|+|..-+ ....+ ....++.+.
T Consensus 164 ~~a~~fgm~vi~yd~~---~~~~~-----~~--~~~~~~~l~ell~~sDiIslh~--Plt~~---------T~~lI~~~~ 222 (332)
T PRK08605 164 IFAKGYGCDVVAYDPF---PNAKA-----AT--YVDYKDTIEEAVEGADIVTLHM--PATKY---------NTYLFNADL 222 (332)
T ss_pred HHHHHCCCEEEEECCC---CCHHH-----HH--CCEECCCHHHHHHHCCEEEEEC--CCCHH---------HHHHCCHHH
T ss_conf 9987569826787788---76556-----62--0702168999986499999933--68835---------501218999
Q ss_pred HHCCCCCCEEECCC
Q ss_conf 96289872992599
Q gi|255764473|r 251 MSMAHPDALFMHCL 264 (306)
Q Consensus 251 l~~a~~~~~vmHpl 264 (306)
++++|+++++--+.
T Consensus 223 l~~MK~~a~lINta 236 (332)
T PRK08605 223 FKHFKKGAVFVNCA 236 (332)
T ss_pred HHHCCCCCEEEEEC
T ss_conf 97224796899906
No 27
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.50 E-value=0.02 Score=36.14 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=85.1
Q ss_pred CHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHH-------------------------CC-CCCCCCEEEECCC
Q ss_conf 0067763012441240433320246--787655766420-------------------------01-3367730461045
Q gi|255764473|r 111 SRLLELTEYATVPVINALTDNTHPC--QIIADIMTFEEH-------------------------RG-SVKGKLFSWSGDG 162 (306)
Q Consensus 111 ~~~~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~-------------------------~g-~l~~~~i~~vGd~ 162 (306)
..-.+.++.-.|+|.|+-+....+. .+++=++.+.++ .| .+.|+++.++|-+
T Consensus 80 ~ID~~~a~~~gI~V~ntpg~~~~sVAE~~~~liL~~~R~i~~~~~~~r~g~w~~~~~~~~p~~~~g~eL~gktlGIiG~G 159 (333)
T PRK13243 80 NIDVEEATKRGIYVTNTPGVLTEATADFAFALLLATARRVVEADKFVRSGEWKRRGVAWHPMMFLGYDVYGKTIGIVGFG 159 (333)
T ss_pred CCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 30599999699789968996847999999999999986499999999849866456666763445646678899997925
Q ss_pred CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCC
Q ss_conf 55543101001233125765200001321000024320133222136646630687332221000000220133310011
Q gi|255764473|r 163 NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQ 242 (306)
Q Consensus 163 ~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~ 242 (306)
|+.......+.-||+++....|.. . + +..+..|.+ +.++++.++.+|+|..-+ .+..+ .
T Consensus 160 -~IG~~vak~~~~fgm~V~~~d~~~--~-~---~~~~~~~~~---~~~l~ell~~sDiIslh~--Plt~e---------T 218 (333)
T PRK13243 160 -RIGQAIARRAKGFGMRILYYSRTR--K-P---EVEKELGAE---YRPLEDLLRESDFVVLAV--PLTKE---------T 218 (333)
T ss_pred -HHHHHHHHHHHHCCCEEEEECCCC--C-H---HHHHHCCCE---EECHHHHHHHCCEEEECC--CCCCC---------C
T ss_conf -668999999997699999989989--8-6---678760968---811999742165266425--58601---------3
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 12336889962898729925999874873576
Q gi|255764473|r 243 PFQVNLSLMSMAHPDALFMHCLPAHRGEEVIN 274 (306)
Q Consensus 243 ~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~ 274 (306)
...++.+.++++|+++++..+. ||.=|+.
T Consensus 219 ~~li~~~~~~~MK~~a~lIN~a---RG~iVde 247 (333)
T PRK13243 219 YHMINEERLKLMKKTAILVNIA---RGKVVDT 247 (333)
T ss_pred CCCCCHHHHHHCCCCEEEEECC---CCHHCCH
T ss_conf 4613699997179981999858---8400399
No 28
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.36 E-value=0.025 Score=35.55 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=78.7
Q ss_pred HHHHHCCCE-EEEEE-C-CCCHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHH------------HC--------
Q ss_conf 975300101-11210-1-320067763012441240433320246--78765576642------------00--------
Q gi|255764473|r 94 KVLSRYVDA-IVMRT-T-NHSRLLELTEYATVPVINALTDNTHPC--QIIADIMTFEE------------HR-------- 148 (306)
Q Consensus 94 ~~ls~~~D~-iviR~-~-~~~~~~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e------------~~-------- 148 (306)
.+++....+ +|.|. . -+..-.+.++...|+|.|+.+-...+. .+++=++.+.+ .+
T Consensus 58 ~vl~~ap~LK~I~~~g~G~D~ID~~aa~~~gI~V~n~pg~~~~~VAE~~i~liL~l~r~i~~~~~~~~~~~W~~~~~~~~ 137 (314)
T PRK06932 58 ETLQQLPKLKLIAITATGTNNVDLVAAKELGITVKNVTGYSSTTVPEHVLGLIFALKHSLMGWYRDQLSAKWAECKQFCY 137 (314)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99953999809988983456478999974997999389867278999999999999977999999998386432466432
Q ss_pred -----CCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf -----133677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 149 -----GSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 149 -----g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
..+.|+++.++|- +++.......+.-||+++....+.... ... ..+.++++.++.+|+|..
T Consensus 138 ~~~~~~~L~gktvGIiG~-G~IG~~va~~~~~fGm~V~~~~~~~~~----------~~~---~~~~~l~ell~~sDiIsl 203 (314)
T PRK06932 138 FDYPITDVRGSTLGVFGK-GCLGSEVGRLATALGMKVLYAEHKGAT----------ECR---EGYTPFEEVLKQADIVTL 203 (314)
T ss_pred CCCCCCEECCCEEEEECC-CHHHHHHHHHHHCCCCEEEEECCCCCH----------HHC---CCCCCHHHHHHCCCEEEE
T ss_conf 577544003868899763-528889999985289889997876612----------323---465759999623583689
Q ss_pred CCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 10000002201333100111233688996289872992599
Q gi|255764473|r 224 DTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCL 264 (306)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHpl 264 (306)
-+ ...++ ...-++.+.++++|+++++.-..
T Consensus 204 h~--Plt~e---------T~~li~~~~l~~MK~~a~lIN~a 233 (314)
T PRK06932 204 HC--PLTES---------TQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred EE--CCCCC---------CCCHHHHHHHHCCCCCCEEEECC
T ss_conf 51--13010---------23366699973578871999826
No 29
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.21 E-value=0.079 Score=32.25 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=86.9
Q ss_pred CCCEEEEEECC-----------------------CCHHHHHHCCCCCCEECCCCCCC--HHHHHHHHHHHHHHH------
Q ss_conf 01011121013-----------------------20067763012441240433320--246787655766420------
Q gi|255764473|r 99 YVDAIVMRTTN-----------------------HSRLLELTEYATVPVINALTDNT--HPCQIIADIMTFEEH------ 147 (306)
Q Consensus 99 ~~D~iviR~~~-----------------------~~~~~~~~~~~~vpvINa~~~~~--HPtQaL~D~~Ti~e~------ 147 (306)
-+|++++|... +..-.+.++...|+|.|+-+... =--.+++=++.+.++
T Consensus 53 ~~d~liiRS~t~vt~~vi~~a~~Lk~I~r~GvG~dnIDl~aa~~~GI~V~NtPg~Na~aVAEl~i~l~L~l~R~i~~~~~ 132 (409)
T PRK11790 53 DAHFIGIRSRTQLTEEVLEAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVLGEIILLLRGIPEKNA 132 (409)
T ss_pred CCCEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79899991798739999943999719998321577408999986994899699977288999999999999864799999
Q ss_pred -----------CC--CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHH
Q ss_conf -----------01--33677304610455554310100123312576520000132100002432013322213664663
Q gi|255764473|r 148 -----------RG--SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQA 214 (306)
Q Consensus 148 -----------~g--~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~ea 214 (306)
++ .+.|+++.++|-+ ++..-....+..||+++....|....+. .......++++.
T Consensus 133 ~~~~G~W~k~~~~~~El~GKtlGIIG~G-~IG~~VA~~a~~fGm~Vi~yD~~~~~~~-----------~~~~~~~sl~el 200 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRGKTLGIVGYG-HIGTQLSVLAESLGMRVIFYDIEDKLPL-----------GNATQVGSLEEL 200 (409)
T ss_pred HHHCCCCCCCCCCCEEECCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCHHHCCC-----------CCCEECCCHHHH
T ss_conf 9982998756777556358789863675-4769999999876998999786021256-----------684674889999
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 0687332221000000220133310011123368899628987299259998748735767
Q gi|255764473|r 215 VKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINE 275 (306)
Q Consensus 215 l~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~ 275 (306)
++.+|+|-.-+ .+.++ ....++.+.++.+|+++++.-+. ||.=|+.+
T Consensus 201 l~~sD~IslH~--Plt~~---------T~~lIn~~~l~~MK~ga~LIN~A---RG~iVDe~ 247 (409)
T PRK11790 201 LAQSDVVSLHV--PETPS---------TKNMIGAEELALMKPGAILINAS---RGTVVDID 247 (409)
T ss_pred HHHCCEEEECC--CCCHH---------HHCCCCHHHHHHCCCCCEEEECC---CCHHCCHH
T ss_conf 87599999826--79846---------63104399997269998999868---85103999
No 30
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.10 E-value=0.033 Score=34.76 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=73.5
Q ss_pred CHHHHHHCCCCCCEECCCCCCCHH-H-HHHHHHHHHHHHC-------------------------CCCCCCCEEEECCCC
Q ss_conf 006776301244124043332024-6-7876557664200-------------------------133677304610455
Q gi|255764473|r 111 SRLLELTEYATVPVINALTDNTHP-C-QIIADIMTFEEHR-------------------------GSVKGKLFSWSGDGN 163 (306)
Q Consensus 111 ~~~~~~~~~~~vpvINa~~~~~HP-t-QaL~D~~Ti~e~~-------------------------g~l~~~~i~~vGd~~ 163 (306)
..-.+.++-..|+|.|.-+....+ . .+++=++.+.+.. ..+.|+++.++|-+
T Consensus 76 ~ID~~aa~~~gI~V~n~p~~~~~aVAE~~l~~iL~l~r~i~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktlGIvG~G- 154 (311)
T PRK08410 76 NVDLEYAKKRGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDNYVKSGEYSKSPIFTHISRPLGEIKGKKWGIIGLG- 154 (311)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC-
T ss_conf 4219999979968992799784889999999999998557999999971653346522224765351058889998447-
Q ss_pred CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCC
Q ss_conf 55431010012331257652000013210000243201332221366466306873322210000002201333100111
Q gi|255764473|r 164 NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQP 243 (306)
Q Consensus 164 ~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
++.......+.-||+++....|..... ..+ + ..-++++.++.+|+|..-+ ....+ ..
T Consensus 155 ~IG~~va~~l~~fGm~V~~~d~~~~~~---------~~~--~-~~~~l~ell~~sDivslh~--Plt~~---------T~ 211 (311)
T PRK08410 155 TIGKRVAKIAQAFGAEVVYYSTSGKNK---------NSE--Y-ERLSLEELLKTSDIISIHA--PLNEK---------TK 211 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCC---------CCC--C-EECCHHHHHHHCCEEEEEC--CCCCC---------CC
T ss_conf 489999999997699899989843124---------578--1-3578999987378014533--57622---------23
Q ss_pred CCCCHHHHHCCCCCCEEECCC
Q ss_conf 233688996289872992599
Q gi|255764473|r 244 FQVNLSLMSMAHPDALFMHCL 264 (306)
Q Consensus 244 y~i~~~~l~~a~~~~~vmHpl 264 (306)
.-+|.+.++.+|+++++--..
T Consensus 212 ~li~~~~l~~Mk~~a~lIN~a 232 (311)
T PRK08410 212 NLINYEELKLLKDGAILINVG 232 (311)
T ss_pred CHHHHHHHHHCCCCCEEEEEC
T ss_conf 401289996304575599925
No 31
>PRK07574 formate dehydrogenase; Provisional
Probab=96.02 E-value=0.048 Score=33.68 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=87.5
Q ss_pred CHHHHHHCCCCCCEECCC-CC-CCHHHHHHHHHHHHHHHC---------C------------CCCCCCEEEECCCCCCCC
Q ss_conf 006776301244124043-33-202467876557664200---------1------------336773046104555543
Q gi|255764473|r 111 SRLLELTEYATVPVINAL-TD-NTHPCQIIADIMTFEEHR---------G------------SVKGKLFSWSGDGNNILH 167 (306)
Q Consensus 111 ~~~~~~~~~~~vpvINa~-~~-~~HPtQaL~D~~Ti~e~~---------g------------~l~~~~i~~vGd~~~v~h 167 (306)
+.=.+.+.--.|.|.|+- ++ .+=.-+++.-++.+.+++ | .++|+++.++|- +|+..
T Consensus 127 nIDL~AA~erGI~V~nvpG~Ns~SVAEhtv~liLal~R~i~~~~~~v~~G~W~~a~~~~~~~EL~GKTlGIVG~-GrIG~ 205 (385)
T PRK07574 127 HVDLQAASEHNITVAEVTGSNSISVAEHVVMMILALVRNYLPSHRQVVDGGWNIADCVSRSYDLEGMTVGTVGA-GRIGL 205 (385)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCCCCEECCCCEEEEECC-CHHHH
T ss_conf 45499899789999959998719999999999999975888899999849985121256643268998999897-88999
Q ss_pred CHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCC
Q ss_conf 10100123312576520000132100002432013322213664663068733222100000022013331001112336
Q gi|255764473|r 168 SLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVN 247 (306)
Q Consensus 168 S~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~ 247 (306)
.....+.-||+++....|-.. +.+ ..+.. .++...++++.++.+|+|..-+ ....+ ..--+|
T Consensus 206 ~VArra~aFgm~Vl~yDp~~l--~~~---~e~~l--g~~~~~sldeLl~~sDvVslh~--PLt~e---------T~~Lin 267 (385)
T PRK07574 206 AVLRRLKPFDVTLHYTDRHRL--PAE---VEQEL--GLTYHPDVDSLVSVCDVVTIHC--PLHPE---------TEHLFD 267 (385)
T ss_pred HHHHHHHHCCCEEEEECCCCC--CHH---HHHHC--CCCCCCCHHHHHHHCCEEEECC--CCCHH---------HHHHCC
T ss_conf 999999977998998588669--889---99971--9865689999986289699866--79857---------740102
Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 8899628987299259998748735767
Q gi|255764473|r 248 LSLMSMAHPDALFMHCLPAHRGEEVINE 275 (306)
Q Consensus 248 ~~~l~~a~~~~~vmHplP~~rg~EI~~~ 275 (306)
.+.++++|+++++.-+. ||--|+.+
T Consensus 268 ~~~l~~MK~ga~LVNtA---RG~iVDe~ 292 (385)
T PRK07574 268 KDVLSRMKRGSYLVNTA---RGKIVDRD 292 (385)
T ss_pred HHHHHCCCCCCEEEECC---CCHHCCHH
T ss_conf 99994389981899888---61101999
No 32
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.69 E-value=0.08 Score=32.21 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=82.4
Q ss_pred HHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHHC------------------C-CCCCCCEEEECCCCCCCCCHHHC
Q ss_conf 7763012441240433320246--7876557664200------------------1-33677304610455554310100
Q gi|255764473|r 114 LELTEYATVPVINALTDNTHPC--QIIADIMTFEEHR------------------G-SVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 114 ~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
.+.++...|+|.|+-+.....+ .+++=++.+.++. | .+.|+++.++|- +|+..-....
T Consensus 78 ~~aa~~~GI~V~ntP~~n~~svAE~~i~l~l~l~R~i~~~~~~~~~g~W~r~~~~G~eL~gktlGIiG~-G~IG~~vA~~ 156 (524)
T PRK13581 78 IPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQADASLKAGKWERKKFMGVELYGKTLGVIGL-GRIGSEVAKR 156 (524)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC-CHHHHHHHHH
T ss_conf 999987899899489977288999999999998489779999998399675565662136988999776-7578999999
Q ss_pred CCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 12331257652000013210000243201332221366466306873322210000002201333100111233688996
Q gi|255764473|r 173 AARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMS 252 (306)
Q Consensus 173 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~ 252 (306)
+.-||+++....| |.++ +.++..|.+. .++++.++.+|+|..- ..+.++ ..-.++.+.++
T Consensus 157 ~~~fgm~Vi~yDP--~~~~----~~~~~~gv~~---~~l~ell~~sD~IslH--~Plt~e---------T~~li~~~~~~ 216 (524)
T PRK13581 157 AKAFGMKVIAYDP--YISP----ERAAQLGVEL---VELDELLARADFITLH--TPLTPE---------TRNLIGAEELA 216 (524)
T ss_pred HHHCCCEEEEECC--CCCH----HHHHHCCCEE---EEHHHHHHHCCEEEEC--CCCCHH---------HHHHCCHHHHH
T ss_conf 9854974788777--6446----6798719668---6089973108899993--678615---------54430799996
Q ss_pred CCCCCCEEECCCCCCCCCCCCH
Q ss_conf 2898729925999874873576
Q gi|255764473|r 253 MAHPDALFMHCLPAHRGEEVIN 274 (306)
Q Consensus 253 ~a~~~~~vmHplP~~rg~EI~~ 274 (306)
++|+++++.-|. ||.=|+.
T Consensus 217 ~MK~ga~lIN~a---RG~iVde 235 (524)
T PRK13581 217 KMKPGVRIINCA---RGGIIDE 235 (524)
T ss_pred HCCCCCEEEECC---CCCEECH
T ss_conf 068998699748---8760589
No 33
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.48 E-value=0.086 Score=32.00 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=71.9
Q ss_pred HHHHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHHC-------------------------CCCCCCCEEEECCCCC
Q ss_conf 067763012441240433320246--7876557664200-------------------------1336773046104555
Q gi|255764473|r 112 RLLELTEYATVPVINALTDNTHPC--QIIADIMTFEEHR-------------------------GSVKGKLFSWSGDGNN 164 (306)
Q Consensus 112 ~~~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~~-------------------------g~l~~~~i~~vGd~~~ 164 (306)
.-.+.++...|+|.|+-+-...+. ++++=++.+.++. ..+.|+++.++|-+ +
T Consensus 80 ID~~aa~~~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~eL~gktvGIiG~G-~ 158 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG-E 158 (317)
T ss_pred CCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEECCC-H
T ss_conf 069999978998997898683799999999999998545899999982843336555534776543059789997867-6
Q ss_pred CCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCC
Q ss_conf 54310100123312576520000132100002432013322213664663068733222100000022013331001112
Q gi|255764473|r 165 ILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPF 244 (306)
Q Consensus 165 v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y 244 (306)
+..-....+.-||+++.+..+...... . ..-++++.++.+|+|..-+ ....+ ...
T Consensus 159 IG~~va~~~~~fg~~V~~~~~~~~~~~----------~----~~~~l~ell~~sDivslh~--Plt~~---------T~~ 213 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRPAR----------P----DRLPLDELLPQVDALTLHC--PLTEH---------TRH 213 (317)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCC----------C----CCCCHHHHHHHCCEEEEEC--CCCCC---------CHH
T ss_conf 899999999748999999928888642----------4----5057999987388568733--57611---------211
Q ss_pred CCCHHHHHCCCCCCEEECCC
Q ss_conf 33688996289872992599
Q gi|255764473|r 245 QVNLSLMSMAHPDALFMHCL 264 (306)
Q Consensus 245 ~i~~~~l~~a~~~~~vmHpl 264 (306)
-+|.+.++.+|+++++.-..
T Consensus 214 li~~~~l~~Mk~~a~lIN~a 233 (317)
T PRK06487 214 LIGARELALMKPGALLINTA 233 (317)
T ss_pred HHHHHHHHHCCCCCEEEEEC
T ss_conf 57999998538997899706
No 34
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.38 E-value=0.25 Score=28.91 Aligned_cols=242 Identities=17% Similarity=0.125 Sum_probs=134.6
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCCC--CC--
Q ss_conf 771784458999999999999999966523666544379879999-4288835789999898634754333321--00--
Q gi|255764473|r 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMI-FEKPSTRTRVSFEVAMKHLGGDTIFLSG--SE-- 80 (306)
Q Consensus 6 k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~l-F~e~StRTR~SFe~A~~~LG~~~~~~~~--~~-- 80 (306)
|+ +++.++.+.+|+.--..---+....++....+||+|..|+.- -.++-|-. +-..-+.+|+.|..-+. -+
T Consensus 8 kD-~~LA~~G~~~i~wA~~~MPvL~~ir~~~~~~kPlkG~rI~~~LHlt~kTAv---L~~tL~~~GA~V~~~~~Np~STQ 83 (476)
T PTZ00075 8 KD-ISLAEFGRKAIELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTVETAV---LIETLVALGAEVRWCSCNIFSTQ 83 (476)
T ss_pred CC-CHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHH---HHHHHHHCCCEEEEECCCCCCCC
T ss_conf 67-135467589999999779899999999635699899989999822899999---99999985986999647975436
Q ss_pred --------------CCCCCCCCHHHHH----HHHH----HCCCEEE--------EEEC----------------------
Q ss_conf --------------0012321079999----9753----0010111--------2101----------------------
Q gi|255764473|r 81 --------------MQLGRAETIGDTA----KVLS----RYVDAIV--------MRTT---------------------- 108 (306)
Q Consensus 81 --------------ss~~kgEsl~Dt~----~~ls----~~~D~iv--------iR~~---------------------- 108 (306)
.--.||||.++.- ++|. ...|+|+ +=|.
T Consensus 84 DdvaAAL~~~~gi~VfA~kget~eey~~~~~~~L~~~~~~~P~iiiDDGgDl~~llH~~~~~e~~~~~~~~~~~~~~~~~ 163 (476)
T PTZ00075 84 DNAAAAIAKKGGVTVFAWKGETIEEYWWCIEQTLKWSDDGGPNLIVDDGGDLTNLVHDGVKLEKMYEKKGKLPDPSVAEP 163 (476)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 69999988607926999579998999999999973466889877981561277887521121012001356778766751
Q ss_pred -------------------------------CC------CHHHHHHCC--CCCCEECCCCC-------CCHHH-HHHHHH
Q ss_conf -------------------------------32------006776301--24412404333-------20246-787655
Q gi|255764473|r 109 -------------------------------NH------SRLLELTEY--ATVPVINALTD-------NTHPC-QIIADI 141 (306)
Q Consensus 109 -------------------------------~~------~~~~~~~~~--~~vpvINa~~~-------~~HPt-QaL~D~ 141 (306)
.+ ..+..+++. ..+|+||--|. +-|=| |.+.|-
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~l~~~i~G~sEETTTGV~RL~am~~~g~L~fP~i~VNDs~tK~~FDNrYGtgqS~~dg 243 (476)
T PTZ00075 164 EDNRCLLTFLNHLVTKNPNKWPNLVKKIVGVSEETTTGVKNLYKMLKKGKLLFPAINVNDSVTKSKFDNLYGCRESLVDG 243 (476)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCHHHHHHHH
T ss_conf 78899999999887415520146785100400054475999999987796021189987655523402222113659999
Q ss_pred HHHHHHCCC-CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 766420013-3677304610455554310100123312576520000132100002432013322213664663068733
Q gi|255764473|r 142 MTFEEHRGS-VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHC 220 (306)
Q Consensus 142 ~Ti~e~~g~-l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~ 220 (306)
+- +.-+- +.|++++.+|-+ -+..-....+.-+|+.|.++-..... .-.+.-.|..+ ..++++++.+|+
T Consensus 244 i~--raTn~liaGK~vVV~GYG-~~GkG~A~~~rg~GA~ViVtEiDPi~-----ALqA~MdGf~V---~~m~ea~~~~Di 312 (476)
T PTZ00075 244 IK--RATDVMIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPIC-----ALQAAMEGYQV---VLLEDVVETADI 312 (476)
T ss_pred HH--HHHCCEECCCEEEEEECC-CCCHHHHHHHCCCCCEEEEECCCCHH-----HHHHHHCCCEE---EEHHHHHHHCCE
T ss_conf 99--862834547589995045-30121476653589789996168078-----99987458787---569998833999
Q ss_pred CCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCC
Q ss_conf 22210000002201333100111233688996289872992599987487357679679
Q gi|255764473|r 221 VFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDG 279 (306)
Q Consensus 221 V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~ 279 (306)
++|-. + . .=-|+.+.++..|+++++--.|- -+.||+-+.+..
T Consensus 313 fVTaT----G---n--------~~VI~~~H~~~MKdgaIl~N~GH--fd~EId~~~L~~ 354 (476)
T PTZ00075 313 FVTAT----G---N--------DDIITLEHFPRMKDDAIVGNIGH--FDTEIQVAWLKA 354 (476)
T ss_pred EEEEC----C---C--------CCCCCHHHHHHHCCCEEEEECCC--CCHHEEHHHHHH
T ss_conf 99934----9---9--------77468999986537809994587--841040898873
No 35
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.00 E-value=0.33 Score=28.21 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=99.2
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEEECC-CCHHHHHHCCCCCCEECC
Q ss_conf 9428883578999989863475433332100001232107999997530-01011121013-200677630124412404
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR-YVDAIVMRTTN-HSRLLELTEYATVPVINA 127 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~-~~D~iviR~~~-~~~~~~~~~~~~vpvINa 127 (306)
.+.++++ -|.+..--|.+.+.... ...+. ++....+.. ..-+|..|.-. +..=.+.++.-.|+|.|.
T Consensus 30 ~~~~~~~-----~~~~~~~~~~d~v~~~~-~~~i~-----~evl~~l~~~~LK~I~~~gvG~D~IDl~aa~~~GI~V~n~ 98 (330)
T PRK12480 30 TSKELLS-----SATVDQLKDYDGVTTMQ-FGKLE-----NDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNV 98 (330)
T ss_pred EECCCCC-----HHHHHHHCCCCEEEEEE-CCCCC-----HHHHHHHHHCCCEEEEECCEECCHHCHHHHHHCCCEEEEC
T ss_conf 9569899-----89999847999899960-79789-----9999965567975999877217521699999789999959
Q ss_pred CCCCCH--HHHHHHHHHHHHHHC-------------------C-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 333202--467876557664200-------------------1-336773046104555543101001233125765200
Q gi|255764473|r 128 LTDNTH--PCQIIADIMTFEEHR-------------------G-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 128 ~~~~~H--PtQaL~D~~Ti~e~~-------------------g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
-+.... --.+++=++.+.++. | .+.|+++.++|- +|+.......+.-||+++....|
T Consensus 99 P~~~~~aVAE~ai~liL~l~R~~~~~~~~~~~~~~~~~~~~~g~~l~gktvGIiG~-G~IG~~va~~~~~fg~~Vi~yD~ 177 (330)
T PRK12480 99 PSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDA 177 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECC
T ss_conf 98682899999999999998454999999982787645655775235868999675-88999999998756998999899
Q ss_pred HCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 00132100002432013322213664663068733222100000022013331001112336889962898729925999
Q gi|255764473|r 186 IGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLP 265 (306)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP 265 (306)
. |... . ....+..++++.++.+|+|..-+ .+..+ ....+|.+.++++|+++++--+.
T Consensus 178 ~---~~~~-~-------~~~~~~~sleell~~sDiIslh~--Plt~~---------T~~lIn~~~l~~MK~~ailINta- 234 (330)
T PRK12480 178 Y---PNKD-L-------DFLTYKDSVKEAIKDADIISLHV--PANKE---------SYHLFDKAMFDHVKKGAILVNAA- 234 (330)
T ss_pred C---CCCC-C-------CCCEECCCHHHHHHHCCEEEECC--CCCHH---------HHCCHHHHHHHHCCCCCEEEECC-
T ss_conf 8---6422-1-------21323278999987599999737--68533---------12004899997579997699727-
Q ss_pred CCCCC
Q ss_conf 87487
Q gi|255764473|r 266 AHRGE 270 (306)
Q Consensus 266 ~~rg~ 270 (306)
||.
T Consensus 235 --RG~ 237 (330)
T PRK12480 235 --RGA 237 (330)
T ss_pred --CCC
T ss_conf --863
No 36
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=94.85 E-value=0.043 Score=33.95 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEC
Q ss_conf 33677304610455554310100123312576520000132100002432013322213664663068733222100000
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISM 229 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~ 229 (306)
.+.|+++.++|-+ ++.......+..||+++....|..- +. ....+ ....++++.++.+|+|..-+ ..
T Consensus 33 ~L~gk~vgIiG~G-~IG~~va~~l~~fg~~V~~~d~~~~---~~----~~~~~---~~~~~l~~ll~~sDii~~~~--pl 99 (176)
T pfam02826 33 ELSGKTVGIIGLG-RIGRAVARRLKAFGMKVIAYDRYPK---AE----AEALG---ARYVSLDELLAESDVVSLHL--PL 99 (176)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHHCCCEEEECCCCC---CH----HHHCC---EEECCHHHHHHHCCEEEECC--CC
T ss_conf 5799999998969-9999999999983981254379876---10----23157---16668999986299887547--67
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH
Q ss_conf 02201333100111233688996289872992599987487357679
Q gi|255764473|r 230 NQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEV 276 (306)
Q Consensus 230 ~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v 276 (306)
.++ ...-+|.+.++.+|+++++--.. ||.=|+.+.
T Consensus 100 t~~---------T~~li~~~~l~~mk~~a~lIN~s---RG~ivde~a 134 (176)
T pfam02826 100 TPE---------TRHLINAERLALMKPGAILINTA---RGGLVDEDA 134 (176)
T ss_pred CCC---------CCCCCCHHHHHHHCCCCEEEEEC---CCCCCCHHH
T ss_conf 420---------24634699998518998899806---755128999
No 37
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.28 E-value=0.49 Score=27.06 Aligned_cols=199 Identities=17% Similarity=0.127 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCCCCCEECCC
Q ss_conf 57899998986347543333210000-------12321079999975300-10111210132006776301244124043
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQ-------LGRAETIGDTAKVLSRY-VDAIVMRTTNHSRLLELTEYATVPVINAL 128 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss-------~~kgEsl~Dt~~~ls~~-~D~iviR~~~~~~~~~~~~~~~vpvINa~ 128 (306)
+...|.+.+.. +.+++.+...-++ ....|.+.=+-..+... -.+.++=......+.++.+..+++++--.
T Consensus 44 ~~~~~~~~~~~--~~d~iIlPvpg~~d~g~i~~~~~~~~~~l~~~~~~~l~~~~~vf~G~~~~~l~~~~~~~~~~~~d~~ 121 (296)
T PRK08306 44 AKCSSLEEALS--DVDVIILPVPGTNDEGEVDTVFSNEKLVLTKELLEKTPEHCTIFSGIANPYLKELAETTGRKLIELF 121 (296)
T ss_pred EEECCHHHHHH--CCCEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEE
T ss_conf 77346788872--3999997883225896385534678763229999746999879995599899999997598367620
Q ss_pred CCC------CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCC
Q ss_conf 332------02467876557664200133677304610455554310100123312576520000132100002432013
Q gi|255764473|r 129 TDN------THPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQG 202 (306)
Q Consensus 129 ~~~------~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g 202 (306)
... +=||-.=+=...|++.--.+.|-++.++|- +|+..++...+..||.+|+++.-.. ..+..+...|
T Consensus 122 e~d~vAi~NaipTAEGai~~ai~~tp~ti~gs~~lVlG~-Gr~G~~lA~~l~~lGA~V~V~aR~~-----~~~a~a~~~G 195 (296)
T PRK08306 122 ERDDVAIYNSIPTAEGAIMMAIEHTPITIHGSNVLVLGF-GRTGMTLARTLKALGAKVKVGARKS-----AHLARITEMG 195 (296)
T ss_pred CCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHCC
T ss_conf 020355562701489999999965996324765899898-6899999999997799699997999-----9999999769
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCEEE----------CCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 32221366466306873322210000----------0022013331001112336889962898729925999
Q gi|255764473|r 203 ASVALFHDAVQAVKGAHCVFTDTWIS----------MNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLP 265 (306)
Q Consensus 203 ~~i~~~~d~~eal~~aD~V~~~~~~~----------~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP 265 (306)
.......++.+.+.++|+|+-+. .+ |..+...-+. .-++.++|-+-.++..-+++.-..||
T Consensus 196 ~~~v~~~~L~~~~~~~D~i~NTI-Pa~Vlt~~~l~~~~~~avIIDL-AS~PGG~Df~~A~~~Gika~lapgLP 266 (296)
T PRK08306 196 YSPVHLSELAEEVGEADIIFNTI-PALVLTKNVLSKMPPHALIIDL-ASKPGGTDFEYAKKLGIKALLAPGLP 266 (296)
T ss_pred CEEEEHHHHHHHHCCCCEEEECC-CHHHCCHHHHHCCCCCCEEEEE-CCCCCCCCHHHHHHHCCEEEECCCCC
T ss_conf 85871999997735699999898-5254399999418999699994-77999738899998398599728999
No 38
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.88 E-value=0.4 Score=27.66 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=40.5
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 33677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
.+.|+++.++|-+ ++..-....+.-||+++....+.... .. ....+.++++.++.+|+|..
T Consensus 119 ~L~gktvGIiG~G-~IG~~vA~~~~afg~~V~~~~r~~~~----------~~--~~~~~~~~~ell~~sDivsl 179 (303)
T PRK06436 119 LLYNKSLGILGYG-GIGRRVALLAKAFGMNIYAYTRSYVN----------DG--ISSIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred EECCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCCCCC----------CC--CCEEECCHHHHHHHCCEEEE
T ss_conf 4118889998976-56999999999779889998985322----------45--74552689999975999999
No 39
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=93.58 E-value=0.36 Score=27.95 Aligned_cols=193 Identities=16% Similarity=0.156 Sum_probs=130.6
Q ss_pred EEEE-ECC-CCCHHHHHH-HHHHHHCC-CCCCCCCCC-CCCCCCCCCHHHH------HHHHHHC-CCEEEEEECCCCHHH
Q ss_conf 9999-428-883578999-98986347-543333210-0001232107999------9975300-101112101320067
Q gi|255764473|r 47 LAMI-FEK-PSTRTRVSF-EVAMKHLG-GDTIFLSGS-EMQLGRAETIGDT------AKVLSRY-VDAIVMRTTNHSRLL 114 (306)
Q Consensus 47 i~~l-F~e-~StRTR~SF-e~A~~~LG-~~~~~~~~~-~ss~~kgEsl~Dt------~~~ls~~-~D~iviR~~~~~~~~ 114 (306)
|-++ |+| ..-+|..+- +.....++ .+++.|... .|+-++-+|.-+- ...+..- -.|.|+=+.+..++.
T Consensus 28 ~~l~Gf~qL~~gF~G~~~~~~~~~~~~~~DvviLPv~G~~~~G~v~t~f~~~~~~l~~~~~~~~~~~~~~~~Gisn~yL~ 107 (288)
T TIGR02853 28 ISLIGFDQLEDGFTGVEKLELDELDLSTLDVVILPVQGVSQDGKVATVFSNEKVVLKPELLEETKKHCTIYVGISNDYLE 107 (288)
T ss_pred EEEECCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEECHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 99963663002313300101342444466678816788599884874115872164668995207943899737765899
Q ss_pred HHHCCCCCCEECCCC-CC-----CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCC
Q ss_conf 763012441240433-32-----024678765576642001336773046104555543101001233125765200001
Q gi|255764473|r 115 ELTEYATVPVINALT-DN-----THPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGS 188 (306)
Q Consensus 115 ~~~~~~~vpvINa~~-~~-----~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~ 188 (306)
++++.+++++|.-.+ |+ +=||=.=+=++.|+..=-.+-|=++..+|= +|+.+|....++-+|.+|.+++-...
T Consensus 108 ~l~~~a~~~Li~l~erDdvAIYNSIPtaEGAimMA~e~td~TIHgS~v~VlGf-GRtG~tiAr~f~aLGA~V~V~AR~~~ 186 (288)
T TIGR02853 108 ELAAEAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGF-GRTGMTIARTFSALGARVSVGARSSA 186 (288)
T ss_pred HHHHHCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCEEEEECC-CCHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 99987196024100357533445875567899999724896250134578844-70568999999726980575317836
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 3210000243201332221366466306873322210000002201333100111233688996289872992
Q gi|255764473|r 189 EPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFM 261 (306)
Q Consensus 189 ~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vm 261 (306)
.. ..+-+.|..=....++.+.+.++|+|+= +. ...-||.+.|++++++++|+
T Consensus 187 dl-----ARI~E~g~~P~~~~~L~~~v~e~DIviN---------Ti-------PaLvlt~~~l~~lp~~Avii 238 (288)
T TIGR02853 187 DL-----ARITEMGLEPVPLNKLEEKVAEIDIVIN---------TI-------PALVLTKDVLSKLPKHAVII 238 (288)
T ss_pred HH-----HHHHHHCCCCCCHHHHHHHHCCCCEEEE---------CC-------CCCCCCHHHHHHCCCCCEEE
T ss_conf 78-----9999960688271678876500024770---------67-------63003658995268584899
No 40
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.67 E-value=0.33 Score=28.17 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEC
Q ss_conf 33677304610455554310100123312576520000132100002432013322213664663068733222100000
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISM 229 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~ 229 (306)
.+.|+++.++|- +|+.......+.-||+++....+..- |..+ +.. ...+. ++++.++.+|+|..-+ .+
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-----~~~--~~~y~-~l~ell~~sDii~l~~--Pl 210 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-----KEL--GARYV-DLDELLAESDIISLHC--PL 210 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHCCCCEEEEECCCCC-HHHH-----HHC--CCEEC-CHHHHHHHCCEEEEEC--CC
T ss_conf 677888899784-88999999987217968998668874-5557-----405--86041-6899997699999977--99
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH
Q ss_conf 02201333100111233688996289872992599987487357679
Q gi|255764473|r 230 NQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEV 276 (306)
Q Consensus 230 ~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v 276 (306)
..+ ...-+|.+.++++|+++++.-.. ||-=|+.+.
T Consensus 211 t~~---------T~hLin~~~l~~mk~ga~lVNta---RG~~VDe~A 245 (324)
T COG1052 211 TPE---------TRHLINAEELAKMKPGAILVNTA---RGGLVDEQA 245 (324)
T ss_pred CHH---------HHHHCCHHHHHHCCCCEEEEECC---CCCEECHHH
T ss_conf 837---------66532999997568976999648---742165999
No 41
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=91.66 E-value=1.2 Score=24.58 Aligned_cols=241 Identities=16% Similarity=0.083 Sum_probs=132.9
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCC--CCC-----
Q ss_conf 784458999999999999999966523666544379879999-428883578999989863475433332--100-----
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMI-FEKPSTRTRVSFEVAMKHLGGDTIFLS--GSE----- 80 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~l-F~e~StRTR~SFe~A~~~LG~~~~~~~--~~~----- 80 (306)
+++.+..+..|+..-..---+....++....+||+|.+|+.- -.|+-|-. +-..-+.+|+.|..-+ +.+
T Consensus 8 isLa~~G~~~I~wa~~~MPvL~~ir~~~~~ekPl~G~rI~~~lHle~kTA~---L~~tL~~~GA~V~~~~~NplSTQDdv 84 (430)
T pfam05221 8 ISLAAFGRKEIELAENEMPGLMALREEYGPSQPLKGARIAGCLHMTVQTAV---LIETLVALGAEVRWASCNIFSTQDHA 84 (430)
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHH---HHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 224266689999999779899999998635699999889999831799999---99999985987999658975323799
Q ss_pred ----------CCCCCCCCHHHHHHHHHHC--------CCEEE--------EEECC-------------C-----CHHHHH
Q ss_conf ----------0012321079999975300--------10111--------21013-------------2-----006776
Q gi|255764473|r 81 ----------MQLGRAETIGDTAKVLSRY--------VDAIV--------MRTTN-------------H-----SRLLEL 116 (306)
Q Consensus 81 ----------ss~~kgEsl~Dt~~~ls~~--------~D~iv--------iR~~~-------------~-----~~~~~~ 116 (306)
.--.+||+.++.-..+..- .|+++ +=|.. + ..+..+
T Consensus 85 aAaL~~~Gi~VfA~~g~t~eey~~~~~~~L~~~~~~~P~iiiDDG~Dl~~~~h~~~~~l~~~i~G~~EETTTGv~RL~am 164 (430)
T pfam05221 85 AAAIAAAGVPVFAWKGETLEEYWWCIERALTFKDGQGPNMILDDGGDATLLIHKKYPQYLAGIRGVSEETTTGVHRLYKM 164 (430)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999679769993799989999999998465889896565425412522078562888865167153214789987889
Q ss_pred HC--CCCCCEECCCCC-------CCHHH-HHHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 30--124412404333-------20246-78765576642001-336773046104555543101001233125765200
Q gi|255764473|r 117 TE--YATVPVINALTD-------NTHPC-QIIADIMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 117 ~~--~~~vpvINa~~~-------~~HPt-QaL~D~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
.+ ...+|+||.-|. +-|=| |...|-+- +.-+ -+.|++++.+|-+ -+.+-....+.-+|..|.++-.
T Consensus 165 ~~~g~L~fPviaVNDa~tK~~FDNrYGtgqS~~dgi~--r~Tn~liaGK~vVV~GYG-~cGkG~A~r~rglGA~V~VtEv 241 (430)
T pfam05221 165 LKKGKLLFPAINVNDSVTKSKFDNLYGCRESLPDGIK--RATDVMIAGKVAVVCGYG-DVGKGCAASLRGQGARVIVTEI 241 (430)
T ss_pred HHCCCCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHH--HHHCCEECCCEEEEECCC-CCCHHHHHHHHHCCCEEEEECC
T ss_conf 8659606417996766651340134331230999999--861713427679995567-5357899998427988999547
Q ss_pred HCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 00132100002432013322213664663068733222100000022013331001112336889962898729925999
Q gi|255764473|r 186 IGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLP 265 (306)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP 265 (306)
.... .-.+.-.|..+ .++.++++.+|+++|-. + . .=-|+.+.++.+|+++++--.|-
T Consensus 242 DPi~-----ALeA~mDGf~V---~~m~eaa~~~DifvT~T----G---~--------~~vI~~~H~~~MKdgaIl~N~GH 298 (430)
T pfam05221 242 DPIC-----ALQAAMEGYQV---VTLEEVVKDADIFVTTT----G---C--------VDIIVGRHFMNMKKDAIVCNIGH 298 (430)
T ss_pred CHHH-----HHHHHHCCCCC---CCHHHHHHHCCEEEEEC----C---C--------CCCCCHHHHHHHCCCEEEEECCC
T ss_conf 8589-----99998558845---77999985599999936----9---8--------87568999986417849995688
Q ss_pred CCCCCCCCHHHHCCC
Q ss_conf 874873576796799
Q gi|255764473|r 266 AHRGEEVINEVLDGP 280 (306)
Q Consensus 266 ~~rg~EI~~~v~d~~ 280 (306)
-+.||+-+-+..+
T Consensus 299 --fd~EId~~~L~~~ 311 (430)
T pfam05221 299 --FDCEIDVGWLNYN 311 (430)
T ss_pred --CCHHEEHHHHHCC
T ss_conf --7141337877477
No 42
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=91.56 E-value=0.19 Score=29.79 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCCC---CCCCCCCCHHHHCCCCCC
Q ss_conf 4200133677304610455554310100123312-576520000132100002432013---322213664663068733
Q gi|255764473|r 145 EEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQG---ASVALFHDAVQAVKGAHC 220 (306)
Q Consensus 145 ~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g---~~i~~~~d~~eal~~aD~ 220 (306)
++.+|++++++++++|- +.+....+..+...|+ +++++.... +.....++..| ..+.-+.++.+.+.++|+
T Consensus 4 ~~~~~~l~~~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~----~ka~~la~~~~~~~~~~~~~~~l~~~l~~~Di 78 (134)
T pfam01488 4 KKIFGDLKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTL----EKAKELAEEFGGEEVEALPLDELEELLAEADI 78 (134)
T ss_pred HHHHCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHCCCCCEEEEECHHHHHHHHHCCE
T ss_conf 77638814898999996-09999999999975998899954757----89999999849972589851354413631999
Q ss_pred CCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCC-CEEECCCCCCCCCCCCHHHHCCCCCH
Q ss_conf 2221000000220133310011123368899628987-29925999874873576796799710
Q gi|255764473|r 221 VFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPD-ALFMHCLPAHRGEEVINEVLDGPQSV 283 (306)
Q Consensus 221 V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~-~~vmHplP~~rg~EI~~~v~d~~~s~ 283 (306)
|++-+ . -..+-++.+.++.+.+. .++=-..| |+ |+.+|.+-|...
T Consensus 79 vI~aT--------~------s~~~ii~~~~~~~~~~~~~iiDLavP--rn--vd~~v~~l~~v~ 124 (134)
T pfam01488 79 VISAT--------S------APTPIITKEMVEEALKGLLFVDIAVP--RD--IEPEVGELEGVY 124 (134)
T ss_pred EEEEC--------C------CCCCEECHHHHHHCCCCEEEEEECCC--CC--CCHHHCCCCCEE
T ss_conf 99925--------9------99736489999744398599983478--88--665454569869
No 43
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.03 E-value=0.27 Score=28.75 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 32024678765576642001336773046104555543101001233125765200001321000024320133222136
Q gi|255764473|r 130 DNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFH 209 (306)
Q Consensus 130 ~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~ 209 (306)
...=||-+++=+.-++++...++|++++++|..+-|..-+..++..-++.+++|.-. +.
T Consensus 21 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------------------T~ 79 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK---------------------TK 79 (168)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC---------------------CC
T ss_conf 988698499999999994988778569998787300899999998489979997689---------------------88
Q ss_pred CHHHHCCCCCCCCC
Q ss_conf 64663068733222
Q gi|255764473|r 210 DAVQAVKGAHCVFT 223 (306)
Q Consensus 210 d~~eal~~aD~V~~ 223 (306)
|+.+..+.||+|.+
T Consensus 80 ~l~~~~~~ADIvIs 93 (168)
T cd01080 80 NLKEHTKQADIVIV 93 (168)
T ss_pred CHHHHHHHCCEEEE
T ss_conf 97997410453554
No 44
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.82 E-value=1.4 Score=24.05 Aligned_cols=185 Identities=19% Similarity=0.196 Sum_probs=104.5
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 784458999999999999999966523666544379879999428883578999-9898634754333321000012321
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSF-EVAMKHLGGDTIFLSGSEMQLGRAE 87 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SF-e~A~~~LG~~~~~~~~~~ss~~kgE 87 (306)
|+-+.+..+-...+-+..+.++. +.+. .| +=.+.+.=..|+-++...- ..+|+++|..+...+-.+. .. .|
T Consensus 3 idGk~lA~~i~~~lk~~v~~~~~--~~~~--~P--~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~-~t-~~ 74 (283)
T COG0190 3 IDGKALAEKIREELKEKVEALKA--KGGF--KP--GLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPED-IT-EE 74 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--CCCC--CC--EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CC-HH
T ss_conf 23599999999999999999874--4688--84--389999679778999999999999981973689857875-78-99
Q ss_pred CHHHHHHHHHH--CCCEEEEEEC-----CCCHHHH-HHCCCCC---CEECCCC---C--CCHHHHHHHHHHHHHHHC-CC
Q ss_conf 07999997530--0101112101-----3200677-6301244---1240433---3--202467876557664200-13
Q gi|255764473|r 88 TIGDTAKVLSR--YVDAIVMRTT-----NHSRLLE-LTEYATV---PVINALT---D--NTHPCQIIADIMTFEEHR-GS 150 (306)
Q Consensus 88 sl~Dt~~~ls~--~~D~iviR~~-----~~~~~~~-~~~~~~v---pvINa~~---~--~~HPtQaL~D~~Ti~e~~-g~ 150 (306)
-+.+.+.-++. -+|+|.+--| ++..+.+ +....++ .-.|.|- + .-+||-..+= +++.|+. .+
T Consensus 75 eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi-~~ll~~~~i~ 153 (283)
T COG0190 75 ELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGI-MTLLEEYGID 153 (283)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCHHCCCCCCCCCCHHHH-HHHHHHHCCC
T ss_conf 999999996089877579994778877788889860586778566696673532108998778989999-9999983998
Q ss_pred CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 3677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 151 VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 151 l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
+.|++++++|-.+=|.+-+..++..-++.+++|.-. +.|+.+..+.||+|.+
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~---------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR---------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHHHCCEEEE
T ss_conf 789889998998767679999998679989997577---------------------8887898623899999
No 45
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.42 E-value=0.28 Score=28.69 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=70.9
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 64200133677304610455554310100123312-57652000013210000243201332221366466306873322
Q gi|255764473|r 144 FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVF 222 (306)
Q Consensus 144 i~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~ 222 (306)
..+.+|+++++++.++|-+. +....+..+...|+ +++++.... +.....++..|....-+.++.+.+.++|+|+
T Consensus 173 a~~~~~~l~~~~vlviGaGe-m~~l~~k~L~~~g~~~i~v~nRt~----~ra~~la~~~~~~~~~~~~l~~~l~~~Dvvi 247 (429)
T PRK00045 173 AKKIFGDLSGKKVLVIGAGE-MGELVAKHLAEKGVRKITVANRTL----ERAEELAEEFGAEAIPLEELPEALAEADIVI 247 (429)
T ss_pred HHHHCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHCCCEEECHHHHHHHHHHCCEEE
T ss_conf 99864781206599976748-999999999855998499975867----7899999975988974999999996589999
Q ss_pred CCCEEECCCCCHHHHHHCCCCCCCCHHHHHCC------CCCCEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 21000000220133310011123368899628------987299259998748735767967997
Q gi|255764473|r 223 TDTWISMNQEFKAREEHVFQPFQVNLSLMSMA------HPDALFMHCLPAHRGEEVINEVLDGPQ 281 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a------~~~~~vmHplP~~rg~EI~~~v~d~~~ 281 (306)
+-+ . -..|-++.+.++.+ +|-.+|=-..| |++ +.+|-+-|.
T Consensus 248 saT--------~------s~~~ii~~~~~~~~~~~r~~~~~~iiDLavP--Rdi--dp~v~~l~~ 294 (429)
T PRK00045 248 SST--------A------APHPIITKGMVERALKQRRHRPLLLIDLAVP--RDI--EPEVGELDG 294 (429)
T ss_pred EEC--------C------CCCCCCCHHHHHHHHHHCCCCCEEEEECCCC--CCC--CHHHCCCCC
T ss_conf 944--------8------9975027999999987346995699961688--777--443446698
No 46
>TIGR00407 proA gamma-glutamyl phosphate reductase; InterPro: IPR000965 Gamma-glutamyl phosphate reductase (1.2.1.41 from EC) (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate, the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. In bacteria (gene proA) and yeast (gene PRO2), GPR is a monofunctional protein, while in plants and mammals, it is a bifunctional enzyme (P5CS) that consists of two domains, an N-terminal glutamate 5-kinase domain (2.7.2.11 from EC) and a C-terminal GPR domain. ; GO: 0004350 glutamate-5-semialdehyde dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=90.26 E-value=0.15 Score=30.49 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCH
Q ss_conf 210799999753001011121013200677630124412404333202
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTH 133 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~H 133 (306)
.|.+.|.. .+..|+|+||-|+. .+-+......++||||..|.|..|
T Consensus 178 R~~v~eLL-~ld~Y~Dl~iPRGg-~~L~~~~~~~s~iPVl~~g~G~Ch 223 (415)
T TIGR00407 178 RELVSELL-KLDEYVDLIIPRGG-NGLVKLIKQESTIPVLGHGDGICH 223 (415)
T ss_pred HHHHHHHH-CCCCCEEEEEECCC-HHHHHHHHHCCCCCEECCCCEEEE
T ss_conf 88999996-00783179973782-899999871577776036752566
No 47
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=89.98 E-value=0.36 Score=27.94 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 32024678765576642001336773046104555543101001233125765200001321000024320133222136
Q gi|255764473|r 130 DNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFH 209 (306)
Q Consensus 130 ~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~ 209 (306)
...=||-+++=+.-++++.-.++|++++++|..+-|..-+..++..-++.+++|.- .+.
T Consensus 13 ~~~~PcTp~ai~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVtichs---------------------~T~ 71 (159)
T pfam02882 13 PGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLNANATVTVCHS---------------------KTK 71 (159)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECC---------------------CCC
T ss_conf 99969649999999998399857866999888731489999999877998999818---------------------999
Q ss_pred CHHHHCCCCCCCCC
Q ss_conf 64663068733222
Q gi|255764473|r 210 DAVQAVKGAHCVFT 223 (306)
Q Consensus 210 d~~eal~~aD~V~~ 223 (306)
|+.+..++||+|++
T Consensus 72 nl~~~~~~ADIvI~ 85 (159)
T pfam02882 72 DLAEITREADIVVV 85 (159)
T ss_pred CHHHHHHCCCEEEE
T ss_conf 97896300344423
No 48
>PRK12862 malic enzyme; Reviewed
Probab=89.81 E-value=1.7 Score=23.50 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHCCCEEEEEE---CCC-CHHHHHHCCCCCCEECCCCCCCHHHH--HHHHHHHHHHHC-CCCCCCCEEE
Q ss_conf 2107999997530010111210---132-00677630124412404333202467--876557664200-1336773046
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRT---TNH-SRLLELTEYATVPVINALTDNTHPCQ--IIADIMTFEEHR-GSVKGKLFSW 158 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~---~~~-~~~~~~~~~~~vpvINa~~~~~HPtQ--aL~D~~Ti~e~~-g~l~~~~i~~ 158 (306)
.+.+-+|.+.++--+-+|=+-. |+- .....+.+-.+|||.- +++|=|- .++-+.--.+.- ++++..||++
T Consensus 121 ~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv~h---ddqhgtaiv~~a~l~nal~~~~k~~~~~kiv~ 197 (761)
T PRK12862 121 PDKLVEIIAALEPTFGGINLEDIKAPECFEVERKLRERMKIPVFH---DDQHGTAIIVAAAVLNGLKVVGKDIEDVKLVA 197 (761)
T ss_pred HHHHHHHHHHHCCCCCEECHHHCCCCCHHHHHHHHHHHCCCCEEC---CCCCHHHHHHHHHHHHHHHHHCCCHHHEEEEE
T ss_conf 899999999858886602798868973238999999855998233---77651899999999999998488566718999
Q ss_pred ECCCCCCCCCHHHCCCCCCEE---EEEECHHCCCCC--CCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf 104555543101001233125---765200001321--000024320133222136646630687332221000000220
Q gi|255764473|r 159 SGDGNNILHSLIEGAARFNYL---LNIATPIGSEPR--NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEF 233 (306)
Q Consensus 159 vGd~~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~--~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~ 233 (306)
.|-+. -.-+-..++..+|.+ +.+|--+|..-. ++..+.-+..-..-+-...+.|++++||+.+-..
T Consensus 198 ~GaGa-a~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S-------- 268 (761)
T PRK12862 198 SGAGA-AALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-------- 268 (761)
T ss_pred ECCCH-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECC--------
T ss_conf 78878-899999999983998101799946787778877430799999965079665999966898899806--------
Q ss_pred HHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHH---------CCCCCHHHHHHHHHH
Q ss_conf 13331001112336889962898729925999874873576796---------799710686877559
Q gi|255764473|r 234 KAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVL---------DGPQSVVFDEAENRL 292 (306)
Q Consensus 234 ~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~---------d~~~s~~~~Qa~Ngl 292 (306)
.+=-++.+.++.+.++.+|+-+- |-.-||..+.. -+-||=|=.|+.|-+
T Consensus 269 --------~~~~~~~e~v~~Ma~~pivfalA--NP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNvl 326 (761)
T PRK12862 269 --------AAGVLKPEMVKKMAPRPLILALA--NPTPEILPEEARAVRPDAIIATGRSDYPNQVNNVL 326 (761)
T ss_pred --------CCCCCCHHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCHHH
T ss_conf --------89999999998527377786258--98987599999874462798348889854011111
No 49
>PRK07232 malic enzyme; Reviewed
Probab=87.62 E-value=2.4 Score=22.55 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHCCCEEEEE---ECCC-CHHHHHHCCCCCCEECCCCCCCHHHH--HHHHHHHHHHHC-CCCCCCCEE
Q ss_conf 3210799999753001011121---0132-00677630124412404333202467--876557664200-133677304
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMR---TTNH-SRLLELTEYATVPVINALTDNTHPCQ--IIADIMTFEEHR-GSVKGKLFS 157 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR---~~~~-~~~~~~~~~~~vpvINa~~~~~HPtQ--aL~D~~Ti~e~~-g~l~~~~i~ 157 (306)
-.|.+-+|.+.++--+-+|=+- .|+- .....+.+-.+|||.- +++|=|- +++-+.--.+.- ++++..||+
T Consensus 114 d~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv~h---ddqhgtaiv~~a~l~nal~~~~k~~~~~kiv 190 (753)
T PRK07232 114 DPDKFIEAVAALEPTFGGINLEDIKAPECFYIEQKLRERMDIPVFH---DDQHGTAIISAAALLNALELVGKKIEDVKIV 190 (753)
T ss_pred CHHHHHHHHHHHCCCCCEECHHHCCCCCHHHHHHHHHHHCCCCEEC---CCCCHHHHHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 9899999999858886603798868973238999999865998233---7765189999999999999838646671899
Q ss_pred EECCCCCCCCCHHHCCCCCCEE---EEEECHHCCCCC--CCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCC
Q ss_conf 6104555543101001233125---765200001321--00002432013322213664663068733222100000022
Q gi|255764473|r 158 WSGDGNNILHSLIEGAARFNYL---LNIATPIGSEPR--NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQE 232 (306)
Q Consensus 158 ~vGd~~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~--~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~ 232 (306)
+.|-+. -.-+-+.++..+|.+ +.+|--.|..-+ ++..+.-+..-..-+-...+.|++++||+.+-..
T Consensus 191 ~~GaGa-a~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfig~S------- 262 (753)
T PRK07232 191 VSGAGA-AAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAQDTDARTLAEAIEGADVFLGLS------- 262 (753)
T ss_pred EECCCH-HHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEECC-------
T ss_conf 978868-889999999984998010799957786568887762499998634689886999957997899747-------
Q ss_pred CHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHH---------CCCCCHHHHHHHHHH
Q ss_conf 013331001112336889962898729925999874873576796---------799710686877559
Q gi|255764473|r 233 FKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVL---------DGPQSVVFDEAENRL 292 (306)
Q Consensus 233 ~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~---------d~~~s~~~~Qa~Ngl 292 (306)
.+=-++.+.++.+.++.+|+-+- |-.-||..+.. -+-||=|=.|+.|-+
T Consensus 263 ---------~~~~~~~~mv~~Ma~~pivfalA--NP~PEI~p~~a~~~r~d~i~aTGRsD~pNQvNNvl 320 (753)
T PRK07232 263 ---------AAGVLTPEMVKSMADNPIIFALA--NPDPEITPEEAKAVRPDAIIATGRSDYPNQVNNVL 320 (753)
T ss_pred ---------CCCCCCHHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCHHH
T ss_conf ---------79978999998628787798568--98977699999976043798348889854111111
No 50
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=87.16 E-value=0.41 Score=27.54 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCHHHCC-HHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHCCC---CCCCC
Q ss_conf 7844589-9999999999999996652366-------654437987-9999428883578999989863475---43333
Q gi|255764473|r 9 ADLSNIS-SSNLSCIIEVAKKIKNSSENIF-------ENKPLSGKV-LAMIFEKPSTRTRVSFEVAMKHLGG---DTIFL 76 (306)
Q Consensus 9 l~~~dl~-~~~i~~ll~~A~~~k~~~~~~~-------~~~~l~gk~-i~~lF~e~StRTR~SFe~A~~~LG~---~~~~~ 76 (306)
+.+-|.+ ++-+..+-.+|+.+.+...... ..+-|+|-- |.+-|.-.....|..=|.-..+.|. .+.
T Consensus 32 i~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGvigQET~-- 109 (419)
T cd05296 32 LVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETT-- 109 (419)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC--
T ss_conf 999899859999999999999999609980899967999983699999998733793076776543876497653476--
Q ss_pred CCCCC--CCCCCCCHHHHHHHHHHC-CCEEEEEECC--CCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21000--012321079999975300-1011121013--2006776301244124043332024678765576642
Q gi|255764473|r 77 SGSEM--QLGRAETIGDTAKVLSRY-VDAIVMRTTN--HSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEE 146 (306)
Q Consensus 77 ~~~~s--s~~kgEsl~Dt~~~ls~~-~D~iviR~~~--~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e 146 (306)
+++.. ++-.=--+.|.++.+..+ .|+.++--.+ .-..+.+.++..+.+|+-.++..+..+.|+.++-+..
T Consensus 110 G~GG~~~alRtiP~~l~ia~~i~e~cP~AwliNytNP~~ivt~a~~r~~~~k~vGlCh~~~~~~~~la~~Lg~~~ 184 (419)
T cd05296 110 GAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHTGDRVIGLCNVPIGLQRRIAELLGVDP 184 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCH
T ss_conf 747999876228999999999998699838997378799999999966899889979777989999999958987
No 51
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.10 E-value=0.46 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=13.0
Q ss_pred HHHHHHHHC--CCEEEEEECCCCHHHHHHCC
Q ss_conf 999975300--10111210132006776301
Q gi|255764473|r 91 DTAKVLSRY--VDAIVMRTTNHSRLLELTEY 119 (306)
Q Consensus 91 Dt~~~ls~~--~D~iviR~~~~~~~~~~~~~ 119 (306)
+..+-++.+ .|+|+.=..+.-.+.++++.
T Consensus 95 ~vf~eLd~~~~~~aIiASsTSgl~~S~l~~~ 125 (489)
T PRK07531 95 KVLAEIEAAARPDALIGSSTSGFKPSELQEG 125 (489)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf 9999999767998389853665889999865
No 52
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.91 E-value=2.6 Score=22.29 Aligned_cols=242 Identities=15% Similarity=0.101 Sum_probs=136.7
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCC--CCC-----
Q ss_conf 784458999999999999999966523666544379879999-428883578999989863475433332--100-----
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMI-FEKPSTRTRVSFEVAMKHLGGDTIFLS--GSE----- 80 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~l-F~e~StRTR~SFe~A~~~LG~~~~~~~--~~~----- 80 (306)
|++.+..+..|+..=..---+....++....+||+|.+|+.- -.|+-|- -+-..-+.+|+.|..-+ +.+
T Consensus 1 isLA~~G~~~I~wa~~~MPvL~~lr~~~~~~kPl~G~rI~~clHle~kTA---~L~~tL~~~GA~V~~~~~NplSTQDdv 77 (413)
T cd00401 1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTA---VLIETLVALGAEVRWSSCNIFSTQDHA 77 (413)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHH---HHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 97116668999999977989999999863469989988999982058899---999999985998999637976532899
Q ss_pred ----------CCCCCCCCHHHHHHHHHH-------CCCEEE--------EEECC-------------C-----CHHHHHH
Q ss_conf ----------001232107999997530-------010111--------21013-------------2-----0067763
Q gi|255764473|r 81 ----------MQLGRAETIGDTAKVLSR-------YVDAIV--------MRTTN-------------H-----SRLLELT 117 (306)
Q Consensus 81 ----------ss~~kgEsl~Dt~~~ls~-------~~D~iv--------iR~~~-------------~-----~~~~~~~ 117 (306)
.--.||||.++....+.. -.|+++ +=|.. + ..+..+.
T Consensus 78 aAaL~~~gi~VfA~~g~s~eey~~~l~~~L~~~~~~P~iiiDDG~Dl~~~~h~~~~~~~~~i~G~~EETTTGv~RL~am~ 157 (413)
T cd00401 78 AAAIAAAGIPVFAWKGETLEEYWWCIEQALKFPDGEPNMILDDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKME 157 (413)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99999679769984799989999999999828799964686144122121340574677420124555308899999999
Q ss_pred CC--CCCCEECCCCC-------CCHHH-HHHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHH
Q ss_conf 01--24412404333-------20246-78765576642001-3367730461045555431010012331257652000
Q gi|255764473|r 118 EY--ATVPVINALTD-------NTHPC-QIIADIMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 118 ~~--~~vpvINa~~~-------~~HPt-QaL~D~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~ 186 (306)
+. ...|+||.-|. +-|=| |...|-+ .+.-+ -+.|++++.+|-+ -+.+-....+.-+|..|.++-..
T Consensus 158 ~~g~L~fP~iaVNDa~tK~~FDNrYGtgqS~~dgi--~r~Tn~liaGK~vVV~GYG-~~GkG~A~r~rglGA~V~VtEvD 234 (413)
T cd00401 158 KEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGI--KRATDVMIAGKVAVVAGYG-DVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred HCCCCCCCEEEECCHHHHHHCCCCCCCCHHHHHHH--HHHHHHEECCCEEEEECCC-CCCHHHHHHHHHCCCEEEEECCC
T ss_conf 76982786788636666334014433321089999--9874212137779994577-63568899886589889997177
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 01321000024320133222136646630687332221000000220133310011123368899628987299259998
Q gi|255764473|r 187 GSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPA 266 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~ 266 (306)
... .-.+.-.|..+ .+++++++.+|+++|-. + . .=-|+.+.++++|+++++.-.|-
T Consensus 235 Pi~-----ALeA~mDGf~V---~~m~~a~~~~DifiTaT----G---n--------~~VI~~eH~~~MKdgaIl~N~GH- 290 (413)
T cd00401 235 PIC-----ALQAAMEGYEV---MTMEEAVKEGDIFVTTT----G---N--------KDIITGEHFEQMKDGAIVCNIGH- 290 (413)
T ss_pred HHH-----HHHHHHCCCCC---CCHHHHHHHCCEEEEEC----C---C--------CCCCCHHHHHHHCCCEEEEECCC-
T ss_conf 588-----99998568945---77999972389999933----8---8--------77373999998458869980677-
Q ss_pred CCCCCCCHHHHCCCC
Q ss_conf 748735767967997
Q gi|255764473|r 267 HRGEEVINEVLDGPQ 281 (306)
Q Consensus 267 ~rg~EI~~~v~d~~~ 281 (306)
-+.||+-+-+....
T Consensus 291 -fd~EId~~~L~~~a 304 (413)
T cd00401 291 -FDVEIDVKGLKENA 304 (413)
T ss_pred -CCHHEEHHHHHHCC
T ss_conf -72323099887066
No 53
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=86.79 E-value=0.23 Score=29.21 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=74.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCE-EEEEECCCCCHHHHHHHHHHHHCCC---CCCCCC
Q ss_conf 784458999999999999999966523666-------54437987-9999428883578999989863475---433332
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFE-------NKPLSGKV-LAMIFEKPSTRTRVSFEVAMKHLGG---DTIFLS 77 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~-------~~~l~gk~-i~~lF~e~StRTR~SFe~A~~~LG~---~~~~~~ 77 (306)
|.+-|.+++-+..+-.+|+.+.+....... ..-|+|-- |.+-|.-.....|..=+.-..+.|. .+. +
T Consensus 32 i~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~IplkyGv~gqeT~--G 109 (425)
T cd05197 32 VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETV--G 109 (425)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEECCC--C
T ss_conf 99988999999999999999999619983899978999985689999998875670578999868987591444377--7
Q ss_pred CCCC--CCCCCCCHHHHHHHHHHC-CCEEEEEEC-CCCH-HHHHHCC-CCCCEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1000--012321079999975300-101112101-3200-6776301-24412404333202467876557664
Q gi|255764473|r 78 GSEM--QLGRAETIGDTAKVLSRY-VDAIVMRTT-NHSR-LLELTEY-ATVPVINALTDNTHPCQIIADIMTFE 145 (306)
Q Consensus 78 ~~~s--s~~kgEsl~Dt~~~ls~~-~D~iviR~~-~~~~-~~~~~~~-~~vpvINa~~~~~HPtQaL~D~~Ti~ 145 (306)
++.. ++-.---+.|.++-+..+ .|+.++--. +-+. .+.+.++ ..+.+|+-.++-.+-.+.|++++-+-
T Consensus 110 ~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~~~~~~~k~vGLCh~~~~~~~~la~~lg~~ 183 (425)
T cd05197 110 PGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVPPEKAVGLCNVPIGVMEIVAKLLGES 183 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 88999998429999999999998699808997378789999999974888848985866799999999994998
No 54
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.58 E-value=0.88 Score=25.39 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=27.8
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-----------HHHHHHHHHHC--CCEEE--EEECCCCHHHHHHCCC-CCC--EECCCC
Q ss_conf 347543333210000123210-----------79999975300--10111--2101320067763012-441--240433
Q gi|255764473|r 68 HLGGDTIFLSGSEMQLGRAET-----------IGDTAKVLSRY--VDAIV--MRTTNHSRLLELTEYA-TVP--VINALT 129 (306)
Q Consensus 68 ~LG~~~~~~~~~~ss~~kgEs-----------l~Dt~~~ls~~--~D~iv--iR~~~~~~~~~~~~~~-~vp--vINa~~ 129 (306)
--|++++.+.++- -...||+ +++.++.+..| .|+.| +=.|-+.....+.+++ .+| .|-+++
T Consensus 76 ~~~aDvvii~ag~-prkpGmtR~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv~NPvn~~~~i~~~~a~~~p~~~i~~~t 154 (325)
T cd01336 76 FKDVDVAILVGAM-PRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALT 154 (325)
T ss_pred HCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHEEEEE
T ss_conf 3688789994887-799998279999989999999999999861458199992793588999999977999668499842
No 55
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=86.37 E-value=2.2 Score=22.81 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCEEEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HH
Q ss_conf 987999942888----35789999898634754333321000012321079999975300101112101320067---76
Q gi|255764473|r 44 GKVLAMIFEKPS----TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---EL 116 (306)
Q Consensus 44 gk~i~~lF~e~S----tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~ 116 (306)
..+|+..+...+ .+-+-.|+.+++.+|.+++..++....-.. +.+.-..++..+|+|++=..+...+. +.
T Consensus 25 ~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~dA~~D~~~Q---i~qIe~~I~qgvdaIiv~p~D~~al~~~v~~ 101 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQ---MSQIENMINRGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 8679999068888689999999999999759989997189998999---9999999985999999969987888999999
Q ss_pred HCCCCCCEECCC
Q ss_conf 301244124043
Q gi|255764473|r 117 TEYATVPVINAL 128 (306)
Q Consensus 117 ~~~~~vpvINa~ 128 (306)
++...||||+--
T Consensus 102 A~~aGIPVI~~D 113 (330)
T PRK10355 102 AKQEGIKVLAYD 113 (330)
T ss_pred HHHCCCEEEEEC
T ss_conf 998799499957
No 56
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=85.90 E-value=0.33 Score=28.16 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=81.0
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHCCCC-CC--CCC
Q ss_conf 78445899999999999999996652366-------654437987-99994288835789999898634754-33--332
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIF-------ENKPLSGKV-LAMIFEKPSTRTRVSFEVAMKHLGGD-TI--FLS 77 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~-------~~~~l~gk~-i~~lF~e~StRTR~SFe~A~~~LG~~-~~--~~~ 77 (306)
|.+-|.+.+-+..+-.+++.+.+...... ...-|+|-- |.+-|.-....-|..=|.-..+.|-. .+ ..+
T Consensus 32 i~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~~irvGg~~~r~~De~Iplk~Gv~~~vGET~G 111 (423)
T cd05297 32 IALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSG 111 (423)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99988999999999999999998519981899968999984689999998774682488988848988396604456547
Q ss_pred CCCCCCCCC--CCHHHHHHHHHHC-CCEEEEEEC--CCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHH--CCC
Q ss_conf 100001232--1079999975300-101112101--320067763012441240433320246787655766420--013
Q gi|255764473|r 78 GSEMQLGRA--ETIGDTAKVLSRY-VDAIVMRTT--NHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEH--RGS 150 (306)
Q Consensus 78 ~~~ss~~kg--Esl~Dt~~~ls~~-~D~iviR~~--~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~--~g~ 150 (306)
++....+-. --+.|.++.+..+ .|+.++-=. ..-..+.+.++..+.+|+-.++-.+....+++++-.-+. .-.
T Consensus 112 ~GG~~~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~r~~~~k~iGlC~~p~~~~~~la~~l~~~~~~v~~~ 191 (423)
T cd05297 112 PGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTPIKTVGLCHGVQGTAEQLAKLLGEPPEEVDYQ 191 (423)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCHHHCEEE
T ss_conf 75899986228999999999998799838997678889999999973899789879776999999999829988991899
Q ss_pred CCCCC-EEEEC
Q ss_conf 36773-04610
Q gi|255764473|r 151 VKGKL-FSWSG 160 (306)
Q Consensus 151 l~~~~-i~~vG 160 (306)
.-|++ .+|.=
T Consensus 192 ~~GLNH~~W~~ 202 (423)
T cd05297 192 VAGINHMAWLL 202 (423)
T ss_pred EECCCEEEEEE
T ss_conf 95054468999
No 57
>PRK05442 malate dehydrogenase; Provisional
Probab=85.77 E-value=1.1 Score=24.70 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4754333321000012321079999
Q gi|255764473|r 69 LGGDTIFLSGSEMQLGRAETIGDTA 93 (306)
Q Consensus 69 LG~~~~~~~~~~ss~~kgEsl~Dt~ 93 (306)
-|++++.+.++- .-..||+-.|.+
T Consensus 79 ~~aDvviitag~-prkPGmtR~DLl 102 (325)
T PRK05442 79 KDADVALLVGAR-PRGPGMERKDLL 102 (325)
T ss_pred CCCCEEEECCCC-CCCCCCCHHHHH
T ss_conf 799889980786-799997489999
No 58
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.62 E-value=3 Score=21.87 Aligned_cols=240 Identities=16% Similarity=0.120 Sum_probs=134.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCC--CCC-----
Q ss_conf 784458999999999999999966523666544379879999-428883578999989863475433332--100-----
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMI-FEKPSTRTRVSFEVAMKHLGGDTIFLS--GSE----- 80 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~l-F~e~StRTR~SFe~A~~~LG~~~~~~~--~~~----- 80 (306)
+++.+..+.+|+..=..---+....++....+||+|.+|+.- -.++-|- -+-..-+.+|+.|..-+ +-+
T Consensus 10 ~~La~~G~~~Iewa~~~MPvL~~ir~~~~~~kPl~G~rI~~clHle~kTA---~L~~tL~~~GAeV~~~~~NplSTQDdv 86 (427)
T PRK05476 10 ISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTA---VLIETLKALGAEVRWASCNPFSTQDHA 86 (427)
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHH---HHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 02306668999999977979999999863369989988999983008899---999999984998999547987645799
Q ss_pred ----------CCCCCCCCHHHHHHH----HHHCCCEEEEEECC--------------------C------CHHHHHHCC-
Q ss_conf ----------001232107999997----53001011121013--------------------2------006776301-
Q gi|255764473|r 81 ----------MQLGRAETIGDTAKV----LSRYVDAIVMRTTN--------------------H------SRLLELTEY- 119 (306)
Q Consensus 81 ----------ss~~kgEsl~Dt~~~----ls~~~D~iviR~~~--------------------~------~~~~~~~~~- 119 (306)
.--.+|||.++.... |+...|+++=-..+ + ..+..+++.
T Consensus 87 aAaL~~~Gi~VfA~~g~t~eey~~~~~~~L~~~P~iiiDDG~Dl~~~lh~~~~~~~~~i~G~~EETTTGv~RL~am~~~g 166 (427)
T PRK05476 87 AAALAAAGIPVFAWKGETLEEYWEAIERALDWGPNMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDG 166 (427)
T ss_pred HHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCEECCCCCCHHHHHHHHHHHCC
T ss_conf 99998689169997898999999999997555998787565228999998605667541630347526389999998669
Q ss_pred -CCCCEECCCCC-------CCHHH-HHHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCC
Q ss_conf -24412404333-------20246-78765576642001-3367730461045555431010012331257652000013
Q gi|255764473|r 120 -ATVPVINALTD-------NTHPC-QIIADIMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSE 189 (306)
Q Consensus 120 -~~vpvINa~~~-------~~HPt-QaL~D~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~ 189 (306)
..+|+||.-|. +-|=| |.+.|-+ .+.-+ -+.|++++.+|-+ .+.+-....+.-+|..|.++-....
T Consensus 167 ~L~~PviavNDa~tK~~FDNrYGtGqS~~dgi--~r~Tn~llaGK~vVV~GYG-~~GkG~A~~arg~GA~ViVtEvDPi- 242 (427)
T PRK05476 167 ELKFPAINVNDSVTKSKFDNRYGTGESLLDGI--KRATNVLIAGKVVVVAGYG-DVGKGSAQRLRGLGARVIVTEIDPI- 242 (427)
T ss_pred CCCCCEEEECCHHHHHHCCCCCCCCCCHHHHH--HHHHCCEECCCEEEEECCC-CCCCHHHHHHHCCCCEEEEEECCHH-
T ss_conf 77777798655344222245533462499999--9873521257379995566-5560089987418987999804737-
Q ss_pred CCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 21000024320133222136646630687332221000000220133310011123368899628987299259998748
Q gi|255764473|r 190 PRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRG 269 (306)
Q Consensus 190 ~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg 269 (306)
..-.+.-.|..+ ..++++++.+|+++|-. + . .=-|+.+.++..|+++++.-.|- -+
T Consensus 243 ----~ALeA~mDGf~V---~~~~~a~~~~DifiT~T----G---~--------~~vI~~~h~~~MKdgaIl~N~GH--fd 298 (427)
T PRK05476 243 ----CALQAAMDGFEV---MTMEEAAEKADIFVTAT----G---N--------KDVITAEHMEAMKDGAIVCNIGH--FD 298 (427)
T ss_pred ----HHHHHHHCCCCC---CCHHHHHHHCCEEEEEC----C---C--------CCCCCHHHHHHHCCCEEEECCCC--CC
T ss_conf ----999988627835---65899862089999904----8---9--------57248999985078829976777--75
Q ss_pred CCCCHHHHCC
Q ss_conf 7357679679
Q gi|255764473|r 270 EEVINEVLDG 279 (306)
Q Consensus 270 ~EI~~~v~d~ 279 (306)
.||+-+-+..
T Consensus 299 ~EIdv~~L~~ 308 (427)
T PRK05476 299 NEIDVAALEE 308 (427)
T ss_pred CEEEHHHHHH
T ss_conf 0432887752
No 59
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=85.40 E-value=0.35 Score=28.03 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHCCC---CCCCC
Q ss_conf 178445899999999999999996652366-------654437987-9999428883578999989863475---43333
Q gi|255764473|r 8 FADLSNISSSNLSCIIEVAKKIKNSSENIF-------ENKPLSGKV-LAMIFEKPSTRTRVSFEVAMKHLGG---DTIFL 76 (306)
Q Consensus 8 ~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~-------~~~~l~gk~-i~~lF~e~StRTR~SFe~A~~~LG~---~~~~~ 76 (306)
-+.+-|.+.+-+..+-.+|+.+........ ..+-|+|-- |.+-|.-.....|..=|.=..+.|. .+.
T Consensus 31 ei~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~~irvGg~~~r~~De~Ip~kyGivgqeT~-- 108 (437)
T cd05298 31 ELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETC-- 108 (437)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 899977999999999999999998529981799967999985799999996652683267888767987597760156--
Q ss_pred CCCCC--CCCCCCCHHHHHHHHHHC-CCEEEEEECC-CCHH-HHHHC-CCCCCEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 21000--012321079999975300-1011121013-2006-77630-124412404333202467876557664
Q gi|255764473|r 77 SGSEM--QLGRAETIGDTAKVLSRY-VDAIVMRTTN-HSRL-LELTE-YATVPVINALTDNTHPCQIIADIMTFE 145 (306)
Q Consensus 77 ~~~~s--s~~kgEsl~Dt~~~ls~~-~D~iviR~~~-~~~~-~~~~~-~~~vpvINa~~~~~HPtQaL~D~~Ti~ 145 (306)
+++.. ++-.-=-+.|.++-+..+ .|+.++--.+ .+.+ +.+.+ +..+.+|.-..+..+-.+.|+.++-+-
T Consensus 109 G~GGi~~alRtiPv~ldia~di~e~cP~AwliNytNP~~~vt~al~~~~~~~k~vGLCh~~~~~~~~la~~Lg~~ 183 (437)
T cd05298 109 GPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLFPNARILNICDMPIAIMDSMAAILGLD 183 (437)
T ss_pred CCCHHHEEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 646224011449999999999998799928997578789999999974899988988978899999999995898
No 60
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=85.36 E-value=0.59 Score=26.50 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHH
Q ss_conf 2107999997530010111210132006776301244124043332024
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHP 134 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HP 134 (306)
+|++.+..+ +..|+|+++-|+. .+-+....+.+++|||-.|.|..|=
T Consensus 184 R~~v~~ll~-l~~yiD~iIPRGg-~~Li~~v~~~a~vPVi~~~~G~CHi 230 (417)
T COG0014 184 REEVLELLR-LDGYIDLVIPRGG-AGLIRRVVENATVPVIEHGVGNCHI 230 (417)
T ss_pred HHHHHHHHH-HCCCEEEEECCCC-HHHHHHHHHCCCCCEEECCCCEEEE
T ss_conf 799999982-0676369973895-7999999847958788547503799
No 61
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.02 E-value=0.62 Score=26.39 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=24.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 437987999942888357899998986347543333210
Q gi|255764473|r 41 PLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 41 ~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~ 79 (306)
-|+||+|..+=.= +|=.|-....+++|..+...|..
T Consensus 11 ~~~gk~v~V~GlG---~sG~s~a~~L~~~G~~v~~~D~~ 46 (481)
T PRK01438 11 DWSGLRVVVAGLG---VSGFPAADALHELGASVTVVADG 46 (481)
T ss_pred HCCCCEEEEEEEC---HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7189989999575---88999999999679989999799
No 62
>PRK12861 malic enzyme; Reviewed
Probab=84.49 E-value=3.4 Score=21.53 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHCCCEEEEE---ECCC-CHHHHHHCCCCCCEECCCCCCCHHHH--HHHHHHHHHHHC-CCCCCCCEEE
Q ss_conf 210799999753001011121---0132-00677630124412404333202467--876557664200-1336773046
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMR---TTNH-SRLLELTEYATVPVINALTDNTHPCQ--IIADIMTFEEHR-GSVKGKLFSW 158 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR---~~~~-~~~~~~~~~~~vpvINa~~~~~HPtQ--aL~D~~Ti~e~~-g~l~~~~i~~ 158 (306)
.+.+-+|.+.++--+-+|-+- .|+- ..-..+.+-.+|||.- +++|=|- +++-+.--.+.- ++++..||++
T Consensus 116 ~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv~h---ddqhgtaii~~a~l~nal~~~~k~~~~~kiv~ 192 (762)
T PRK12861 116 PDKLVDIIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFH---DDQHGTAITVAAAFINGLKVVGKSIKEVKVVT 192 (762)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEC---CCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEE
T ss_conf 899999999858875623798768974027999999867998231---67760899999999999998287565616999
Q ss_pred ECCCCCCCCCHHHCCCCCCE---EEEEECHHCCC--CCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf 10455554310100123312---57652000013--21000024320133222136646630687332221000000220
Q gi|255764473|r 159 SGDGNNILHSLIEGAARFNY---LLNIATPIGSE--PRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEF 233 (306)
Q Consensus 159 vGd~~~v~hS~i~~~~~~g~---~v~~~~P~~~~--~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~ 233 (306)
.|-+. -.-+-+.++..+|. ++.+|--+|.. -+++..+..+..-..-+-...+.+++++||+.+-..
T Consensus 193 ~GaGa-a~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfiG~S-------- 263 (762)
T PRK12861 193 SGAGA-AALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPAKERFAQETDARTLAEVIGGADVFLGLS-------- 263 (762)
T ss_pred ECCCH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECC--------
T ss_conf 68778-899999999983999555899947785118986535799999985689777999837898899767--------
Q ss_pred HHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHH---------CCCCCHHHHHHHHHH
Q ss_conf 13331001112336889962898729925999874873576796---------799710686877559
Q gi|255764473|r 234 KAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVL---------DGPQSVVFDEAENRL 292 (306)
Q Consensus 234 ~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~---------d~~~s~~~~Qa~Ngl 292 (306)
.+=-++.+.++.+.++.+|+-+- |-.-||..+.. -+-||=|=.|+.|-+
T Consensus 264 --------~~~~~~~~mv~~Ma~~pivfalA--NP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNvL 321 (762)
T PRK12861 264 --------AGGVLKAEMLKAMAARPLILALA--NPTPEIFPELAHATRDDVVIATGRSDYPNQVNNVL 321 (762)
T ss_pred --------CCCCCCHHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEE
T ss_conf --------89989999998537787699726--99988898998541686898348878853124532
No 63
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=84.47 E-value=0.4 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCC---CCCCCCCCCHHHHCC
Q ss_conf 32221366466306873322210000002201333100111233688996289872992599---987487357679679
Q gi|255764473|r 203 ASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCL---PAHRGEEVINEVLDG 279 (306)
Q Consensus 203 ~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHpl---P~~rg~EI~~~v~d~ 279 (306)
.+++.+.|.++|+++||+|+........+ ....+.+.-.+|++....=+...+.. +++-+ | .-.||..++-+-
T Consensus 59 ~~v~~ttd~~eAl~gADfVi~~irvG~~~-~r~~De~Iplk~Gv~~~~~eT~G~GG-~~~alRtip--~~l~ia~~i~e~ 134 (183)
T pfam02056 59 IKFEKTTDRKEALTDADFVINAIRVGLLP-ARELDEKIPLRHGVVGTIQETVGPGG-IFRGLRTIP--VFFDIAKDIEEL 134 (183)
T ss_pred EEEEEECCHHHHHCCCCEEEEEEEECCCH-HHHHHHHHHHHCCCCCEECCCCCCCH-HHHHHCCHH--HHHHHHHHHHHH
T ss_conf 39999789999966899999986407714-88877767998396532332457228-887760189--999999999997
Q ss_pred -CCCHHH
Q ss_conf -971068
Q gi|255764473|r 280 -PQSVVF 285 (306)
Q Consensus 280 -~~s~~~ 285 (306)
|..|++
T Consensus 135 ~P~Awli 141 (183)
T pfam02056 135 CPDAWVL 141 (183)
T ss_pred CCCCEEE
T ss_conf 9983899
No 64
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.42 E-value=1.4 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4754333321000012321079999
Q gi|255764473|r 69 LGGDTIFLSGSEMQLGRAETIGDTA 93 (306)
Q Consensus 69 LG~~~~~~~~~~ss~~kgEsl~Dt~ 93 (306)
=|++++.+.++- .-.-|||-.|.+
T Consensus 77 ~~aDvVvitaG~-prkPG~tR~DLl 100 (322)
T cd01338 77 KDADWALLVGAK-PRGPGMERADLL 100 (322)
T ss_pred CCCCEEEEECCC-CCCCCCCHHHHH
T ss_conf 788789993687-899898189999
No 65
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=84.10 E-value=1.4 Score=24.02 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=43.8
Q ss_pred HHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 576642001-3367730461045555431010012331257652000013210000243201332221366466306873
Q gi|255764473|r 141 IMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAH 219 (306)
Q Consensus 141 ~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD 219 (306)
+..+.++++ +++|++++++|..+-|..-+..++..-|+.+++|.-. +.|+.+.+++||
T Consensus 15 v~~ll~~y~i~l~Gk~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~AD 73 (140)
T cd05212 15 VKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK---------------------TIQLQSKVHDAD 73 (140)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHHHCC
T ss_conf 99999980999999999999998124999999999788989994699---------------------959899852349
Q ss_pred CCCCC
Q ss_conf 32221
Q gi|255764473|r 220 CVFTD 224 (306)
Q Consensus 220 ~V~~~ 224 (306)
+|.+-
T Consensus 74 IvI~a 78 (140)
T cd05212 74 VVVVG 78 (140)
T ss_pred EEEEC
T ss_conf 99981
No 66
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=83.80 E-value=3.6 Score=21.35 Aligned_cols=102 Identities=13% Similarity=0.216 Sum_probs=56.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCHHHHHHHHHHC-CCEEEEEECCC----CHHHH
Q ss_conf 7999942888357899998986347543333210-----00012321079999975300-10111210132----00677
Q gi|255764473|r 46 VLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS-----EMQLGRAETIGDTAKVLSRY-VDAIVMRTTNH----SRLLE 115 (306)
Q Consensus 46 ~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~-----~ss~~kgEsl~Dt~~~ls~~-~D~iviR~~~~----~~~~~ 115 (306)
+|+.+|.+.+--.-.+|..|+.+.-.+.-.+... --.+...-|+.=+-++...+ .++..|=+|.+ ..+..
T Consensus 1 ~IGaIF~~~~~~~e~AFr~Av~~iN~~~~~l~~~~L~~~i~~v~~~DsF~~~k~~C~ll~~GV~AIfGP~s~~sa~~v~S 80 (400)
T cd06391 1 HIGAIFDESAKKDDEVFRMAVADLNQNNEILQTEKITVSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQS 80 (400)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf 91366579984899999999998605833257871068888738999089999999987439469999997558999998
Q ss_pred HHCCCCCCEE------------------CCCC-C---CCHHH----HHHHHHHHHHHH
Q ss_conf 6301244124------------------0433-3---20246----787655766420
Q gi|255764473|r 116 LTEYATVPVI------------------NALT-D---NTHPC----QIIADIMTFEEH 147 (306)
Q Consensus 116 ~~~~~~vpvI------------------Na~~-~---~~HPt----QaL~D~~Ti~e~ 147 (306)
+.....||.| .+.. + .-||. +|++|+.+-.++
T Consensus 81 icdal~IPhi~~~~~~~~~p~~~~~~~~~~~~~~f~inl~P~~~l~~A~~dlV~~~~W 138 (400)
T cd06391 81 LADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVRPPVYLNDVILRVVTEYAW 138 (400)
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 7446889807632577778411267664557775389827768999999999997798
No 67
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=83.31 E-value=3.7 Score=21.32 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCEEEEEECCCCCHHHHHH--HHHHHHCCCCCCCCCCCC-------------------CCCCCCCCHHHHHHHH--HHC
Q ss_conf 79879999428883578999--989863475433332100-------------------0012321079999975--300
Q gi|255764473|r 43 SGKVLAMIFEKPSTRTRVSF--EVAMKHLGGDTIFLSGSE-------------------MQLGRAETIGDTAKVL--SRY 99 (306)
Q Consensus 43 ~gk~i~~lF~e~StRTR~SF--e~A~~~LG~~~~~~~~~~-------------------ss~~kgEsl~Dt~~~l--s~~ 99 (306)
+|+.+=..=.|.|-.|-++. -+.+++.||.+.++|+.+ ||...||..-+.+..| |.-
T Consensus 54 ~GRi~EiYGpESsGKTTLal~~iA~~Qk~Gg~~afiDAEHAlD~~YA~~LGv~~~~L~~sQPd~GE~ALeI~~~L~rSgA 133 (322)
T TIGR02012 54 KGRIIEIYGPESSGKTTLALHVIAEAQKAGGVAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (322)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 75079985489884789999999999743983899845130377889983645247112088871469999999872376
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHHHHHHHCCCC
Q ss_conf 101112101320067763012441240433320246-7876557664200133
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPC-QIIADIMTFEEHRGSV 151 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPt-QaL~D~~Ti~e~~g~l 151 (306)
+|+||+=.- .++-.-+ =|++.=+++|+= ||=+==-.+++..+.+
T Consensus 134 vD~iVvDSV--AAL~P~a------EieGemgd~~~Gl~ARLMS~ALRKl~g~~ 178 (322)
T TIGR02012 134 VDIIVVDSV--AALVPKA------EIEGEMGDSHVGLQARLMSQALRKLTGAL 178 (322)
T ss_pred CEEEEECCC--CCCCCHH------HCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 117997340--0138712------31754354423257888999999888765
No 68
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=83.30 E-value=3.1 Score=21.77 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=57.3
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCC
Q ss_conf 75300101112101320067763012441240433320246787655766420013367730461045555431010012
Q gi|255764473|r 95 VLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAA 174 (306)
Q Consensus 95 ~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~ 174 (306)
.....+|+|+-|+.. ...+.++.++|||.-.-..+ |++-....... .+.+++++|..+ +..+.-....
T Consensus 28 ~~~~g~dvIIsRGgt---a~~ir~~~~iPVv~I~~s~~-------Dil~al~~a~~-~~~kiavvg~~~-~~~~~~~~~~ 95 (169)
T pfam06506 28 LVAEGVDVIISRGGT---AAYLRDRLSVPVVEIKVSGF-------DLLRALARARR-YGGRIGLVGYEN-IIPGLKALSE 95 (169)
T ss_pred HHHCCCCEEEECCHH---HHHHHHHCCCCEEEEECCHH-------HHHHHHHHHHH-HCCCEEEEECCC-CCHHHHHHHH
T ss_conf 997799599989658---99999858998899827886-------99999999997-589799992763-0368999999
Q ss_pred CCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 331257652000013210000243201332221
Q gi|255764473|r 175 RFNYLLNIATPIGSEPRNEYLNWARNQGASVAL 207 (306)
Q Consensus 175 ~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~ 207 (306)
.||.++.+.......--...+..++..|.++.+
T Consensus 96 il~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV 128 (169)
T pfam06506 96 LLGLDIVQRAYQSEEEARAAVKELKAQGIKVIV 128 (169)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
T ss_conf 969935999966889999999999986995998
No 69
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=83.14 E-value=2.8 Score=22.11 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=85.0
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH----HHH--CCCE-EEEEECCCCHHH--HHHCC
Q ss_conf 99428883578999989863475433332100001232107999997----530--0101-112101320067--76301
Q gi|255764473|r 49 MIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKV----LSR--YVDA-IVMRTTNHSRLL--ELTEY 119 (306)
Q Consensus 49 ~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~----ls~--~~D~-iviR~~~~~~~~--~~~~~ 119 (306)
..|.+++.+..++||- +||.-.+|.+. |.++.++=+- |+. -+|+ +|+-.|+.+... -+++.
T Consensus 235 ~~~~~~~~~~~C~FEy---------IYFaRpdS~i~-g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPDSg~~aA~gya~~ 304 (475)
T PRK07631 235 ERFSPNINRSICSMEY---------IYFARPDSNVD-GINVHTARKNLGKQLAEEAPVEADVVTGVPDSSISAAIGYAEA 304 (475)
T ss_pred EECCCCCCCCCCEEEE---------EECCCCCCCCC-CEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9537987765550343---------21268873207-7069999999999998327987888997899638899999987
Q ss_pred CCCCEECCCCC-C------CHHHHHHHHHHHHHH---HCCCCCCCCEEEECC---CCCCCCCHHHCCCCCCEE---EEEE
Q ss_conf 24412404333-2------024678765576642---001336773046104---555543101001233125---7652
Q gi|255764473|r 120 ATVPVINALTD-N------THPCQIIADIMTFEE---HRGSVKGKLFSWSGD---GNNILHSLIEGAARFNYL---LNIA 183 (306)
Q Consensus 120 ~~vpvINa~~~-~------~HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd---~~~v~hS~i~~~~~~g~~---v~~~ 183 (306)
+.+|.--+.-. . =-|+|.+=+.-.=.+ .+..++|++|..|-| -+++.+..+..+...|++ +.++
T Consensus 305 sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~ 384 (475)
T PRK07631 305 TGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred CCCCHHHHHHCCCEECCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 29954541100130146577975889987442014244200389737997443510641999999999769988999968
Q ss_pred CHHCCCCC
Q ss_conf 00001321
Q gi|255764473|r 184 TPIGSEPR 191 (306)
Q Consensus 184 ~P~~~~~~ 191 (306)
+|+-..|.
T Consensus 385 sPpi~~pc 392 (475)
T PRK07631 385 SPPIAHPC 392 (475)
T ss_pred CCCCCCCC
T ss_conf 99857876
No 70
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.91 E-value=1.6 Score=23.73 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECCC
Q ss_conf 5789999898634754333321000012321079999975300101112101320067---76301244124043
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINAL 128 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa~ 128 (306)
+-+-.+|.+++.||.++..+++... ..+- +.+.-..+...+|+|++=..+...+. +-++...||||.-.
T Consensus 16 ~~~~Gae~aA~e~Gv~v~~~~a~~D-~~~Q--~~~Ie~~I~~gvD~Iiv~p~d~~a~~~~~~~A~~aGIpVV~~d 87 (272)
T cd06313 16 QGKQAADEAGKLLGVDVTWYGGALD-AVKQ--VAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMG 87 (272)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC-HHHH--HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999981998999869999-9999--9999999985999999968887899999999998699899974
No 71
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=82.51 E-value=3.8 Score=21.22 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=8.3
Q ss_pred CCHHHHHHH-HHHC-CCEEEEE
Q ss_conf 107999997-5300-1011121
Q gi|255764473|r 87 ETIGDTAKV-LSRY-VDAIVMR 106 (306)
Q Consensus 87 Esl~Dt~~~-ls~~-~D~iviR 106 (306)
|-|.++++. ...| .++|.+-
T Consensus 71 ~kL~~~I~~~~~~y~P~~I~V~ 92 (430)
T cd01981 71 EKVVENITRKDKEEKPDLIVLT 92 (430)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999984399768997
No 72
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=81.81 E-value=4.3 Score=20.85 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHH
Q ss_conf 78765576642001-33677304610455554310100123312576520000132100002432013322213664663
Q gi|255764473|r 136 QIIADIMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQA 214 (306)
Q Consensus 136 QaL~D~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~ea 214 (306)
|.+.|-+ .+.-+ -+.|++++.+|-+ -+..+....+.-+|..+.++-..... .-.+.-.| +.+ ..++++
T Consensus 7 qS~~d~i--~r~tn~llaGk~vvV~GYG-~~GkGvA~~~rg~Ga~V~V~EvDPi~-----aleA~mdG--f~V-~~~~ea 75 (162)
T pfam00670 7 ESLIDGI--KRATDVMIAGKVAVVCGYG-DVGKGCAASLKGQGARVIVTEIDPIC-----ALQAAMEG--FQV-VTLEEV 75 (162)
T ss_pred CCHHHHH--HHHHCCEECCCEEEEECCC-CCCHHHHHHHHCCCCEEEEEECCCHH-----HHHHHHCC--CCC-CCHHHH
T ss_conf 0289999--8861765748789996787-66777999862299989999479306-----99998649--954-788898
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCC
Q ss_conf 068733222100000022013331001112336889962898729925999874873576796799
Q gi|255764473|r 215 VKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGP 280 (306)
Q Consensus 215 l~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~ 280 (306)
++.+|++.|-. .. .=-++.+-++.+|+++++.--+- .+.||+-+-+..+
T Consensus 76 ~~~aDi~VTaT-------G~--------~~vi~~eh~~~mKdgaIlaN~GH--fd~EIdv~~L~~~ 124 (162)
T pfam00670 76 VKKADIFVTTT-------GN--------KDIITGEHMAKMKNDAIVCNIGH--FDNEIDVAWLNTN 124 (162)
T ss_pred HHCCCEEEECC-------CC--------CCCCCHHHHHHHCCCEEEECCCC--CCCEEEHHHHHCC
T ss_conf 60499999924-------89--------77473999998448869987775--6522728888575
No 73
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=81.80 E-value=2 Score=23.00 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECCCC
Q ss_conf 789999898634754333321000012321079999975300101112101320067---763012441240433
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINALT 129 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa~~ 129 (306)
-+-.++.|++++|..+.++++.+.+..+- +...-..++..+|+|++=..+...+. +-++...||||+--+
T Consensus 17 v~~Gae~aA~e~G~~v~~~~~~~~D~~~Q--~~~ie~~Ia~gvDaIii~p~d~~a~~~~i~~A~~aGIpVv~~Ds 89 (298)
T cd06302 17 MEEGAKEAAKELGVDAIYVGPTTADAAGQ--VQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDS 89 (298)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999799999988998999999--99999999739988999068778889999999867986998268
No 74
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.74 E-value=1 Score=24.93 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=43.5
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCH-HHHCCCCCCCCC
Q ss_conf 0133677304610455554310100123312576520000132100002432013322213664-663068733222
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDA-VQAVKGAHCVFT 223 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~-~eal~~aD~V~~ 223 (306)
+=+++|+++.++|.+. |+-..+..+...|+.+++++|.-. +++...++.....+.. .+. ...+.++++|+.
T Consensus 5 fl~l~gk~vLVVGGG~-vA~rK~~~Ll~~gA~VtVvsp~~~---~el~~l~~~~~i~~~~-~~~~~~dl~~~~lVia 76 (202)
T PRK06718 5 MIDLSNKRVVIVGGGK-VAGRRAITLLKYGAHITVISPEIT---ENLVKLVEEGKIRWKE-KEFEPSDIVDAFLVIA 76 (202)
T ss_pred EEECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHCCCCEEEE-CCCCHHHHCCCCEEEE
T ss_conf 9982898699988989-999999999868996999869999---8999999769944761-6788667516704455
No 75
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=81.29 E-value=1.7 Score=23.53 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=13.9
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 844589999999999999999665
Q gi|255764473|r 10 DLSNISSSNLSCIIEVAKKIKNSS 33 (306)
Q Consensus 10 ~~~dl~~~~i~~ll~~A~~~k~~~ 33 (306)
-+-|++.+-...+..+++.+-+..
T Consensus 36 ~L~Did~~r~~~i~~~~~~~v~~~ 59 (442)
T COG1486 36 ALYDIDEERLKIIAILAKKLVEEA 59 (442)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 998387788999999999999963
No 76
>cd04510 consensus
Probab=81.20 E-value=1.5 Score=23.91 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHCC--C--EEEEEE-CCCCHHHHHHCCC-CCC--EECCCCCCCHHHHHHHHHHHHHHHCC-CCCCC-CE
Q ss_conf 10799999753001--0--111210-1320067763012-441--24043332024678765576642001-33677-30
Q gi|255764473|r 87 ETIGDTAKVLSRYV--D--AIVMRT-TNHSRLLELTEYA-TVP--VINALTDNTHPCQIIADIMTFEEHRG-SVKGK-LF 156 (306)
Q Consensus 87 Esl~Dt~~~ls~~~--D--~iviR~-~~~~~~~~~~~~~-~vp--vINa~~~~~HPtQaL~D~~Ti~e~~g-~l~~~-~i 156 (306)
+-+++..+.|+.|. | ++|+=. |-+.....+.+++ ++| =|.|++.-.| -.|.+= +-++.| ...+. ++
T Consensus 105 ~IF~~qG~al~~~A~~~vKVlVvGN~PaNTNalI~~~~Ap~Ip~~nf~AmtrLD~-NRA~a~---lA~Kl~v~~~~V~nv 180 (334)
T cd04510 105 EHFHRYGQLIEQNAQKDVRVLVAGRGFLNLKASLLIENAPSIDRQNIIAVATQLE-YEAKAQ---LARKLNVNTAGVKDV 180 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHEEEHHHHHH-HHHHHH---HHHHHCCCHHHHEEE
T ss_conf 9999999999853668867999789865277999997577797676561057678-899999---999869997781233
Q ss_pred EEECCCCC-----CCCCHHHCCCCCCEEEEEECHHCC------------CCCCCCHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 46104555-----543101001233125765200001------------3210000243201332221366466306873
Q gi|255764473|r 157 SWSGDGNN-----ILHSLIEGAARFNYLLNIATPIGS------------EPRNEYLNWARNQGASVALFHDAVQAVKGAH 219 (306)
Q Consensus 157 ~~vGd~~~-----v~hS~i~~~~~~g~~v~~~~P~~~------------~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD 219 (306)
.+.|.|+. +-|+.+ .|++=.+-+|.++ +..+++++..++.|..+....-...|...|.
T Consensus 181 iIWGNhS~tq~pD~~~A~v-----~~~dgai~gp~~~~~~v~~~i~D~~Wl~~efi~~Vq~Rga~ii~~Rg~sSAaSaA~ 255 (334)
T cd04510 181 IVWGNIGGSTYIDLSRARV-----YRYDGAIWGPDSFSRHVMEMVHDNKWLDTEFRSLLQKHRATILTSLNHAAAISTAH 255 (334)
T ss_pred EEEECCCCCCCCCHHHCEE-----ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 7984688886774003278-----35465434775456627776347788875313888740688997747450665999
Q ss_pred CC
Q ss_conf 32
Q gi|255764473|r 220 CV 221 (306)
Q Consensus 220 ~V 221 (306)
.+
T Consensus 256 A~ 257 (334)
T cd04510 256 AI 257 (334)
T ss_pred HH
T ss_conf 99
No 77
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=80.62 E-value=2.8 Score=22.12 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHH---HHHHCCCCCCEECC
Q ss_conf 8999989863475433332100001232107999997530010111210132006---77630124412404
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRL---LELTEYATVPVINA 127 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~---~~~~~~~~vpvINa 127 (306)
+-..+.+++.+|.+++..+..+++ +-+.+.-..+++.+|+|++=..+...+ .+.++.+.||||+-
T Consensus 18 ~~g~~~~A~e~G~~l~~~~~~d~~----~q~~~ie~~i~qgvd~iii~p~d~~~~~~~v~~A~~agIpVv~~ 85 (289)
T cd01540 18 WKFAKKAAKEKGFTVVKIDVPDGE----KVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHHHHCCEEEEECCCCHH----HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999849879997689969----99999999998589889992787100189999999879869993
No 78
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=80.61 E-value=3.4 Score=21.51 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=80.1
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHC--CCE-EEEEECCCCH--HHHHHCCCC
Q ss_conf 4288835789999898634754333321000012321079999----975300--101-1121013200--677630124
Q gi|255764473|r 51 FEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTA----KVLSRY--VDA-IVMRTTNHSR--LLELTEYAT 121 (306)
Q Consensus 51 F~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~----~~ls~~--~D~-iviR~~~~~~--~~~~~~~~~ 121 (306)
|.++.-+..++||- +||.-.+|.+ -|.++.++= +.|+.- +|+ +|+-.|+.+. ..-+++.+.
T Consensus 237 ~~~~~~~~~C~FEy---------IYFaRpdS~~-~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aA~gya~~~g 306 (471)
T PRK06781 237 FTNEVDHAICSMEY---------IYFARPDSNI-AGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATG 306 (471)
T ss_pred CCCCCCCCCEEEEE---------HHCCCCCEEE-CCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 48987776338752---------0105887016-8808999999999998621798889899789873889999999809
Q ss_pred CCEECCCCC-C------CHHHHHHHHHHHHHH---HCCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECH
Q ss_conf 412404333-2------024678765576642---0013367730461045---55543101001233125---765200
Q gi|255764473|r 122 VPVINALTD-N------THPCQIIADIMTFEE---HRGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATP 185 (306)
Q Consensus 122 vpvINa~~~-~------~HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P 185 (306)
+|.-.+.-. . =-|+|.+=+...=.+ .+..++|++|.+|-|. +++....+..+...|++ +.+++|
T Consensus 307 ip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sP 386 (471)
T PRK06781 307 IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred CCHHHCEEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 97444301002014435387588998765301104100048988999816605575699999999977998899996899
Q ss_pred HCCCCC
Q ss_conf 001321
Q gi|255764473|r 186 IGSEPR 191 (306)
Q Consensus 186 ~~~~~~ 191 (306)
+-..|.
T Consensus 387 pi~~Pc 392 (471)
T PRK06781 387 PLKYPC 392 (471)
T ss_pred CCCCCC
T ss_conf 857876
No 79
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.34 E-value=1.1 Score=24.80 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4437987999942888357899998986347543333210
Q gi|255764473|r 40 KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~ 79 (306)
..|+||.|+.+=. -+|=.|.-....+.|..+...|..
T Consensus 10 ~~l~~kkv~i~Gl---G~sG~a~a~~L~~~g~~v~~~D~~ 46 (458)
T PRK01710 10 DFIKNKKVAVVGI---GVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred HHHCCCEEEEEEE---CHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9978996999978---788999999999788979999898
No 80
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.23 E-value=2.1 Score=22.92 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECC
Q ss_conf 789999898634754333321000012321079999975300101112101320067---7630124412404
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINA 127 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa 127 (306)
-.-.++.|+.+||..++.....+.+..+- +.+.-..++..+|+|++-..+...+. +-+....||||.-
T Consensus 17 ~~~Ga~~aA~~lG~~v~~~~da~~d~~~Q--~~~i~~~I~~gvDaIii~p~d~~a~~~~v~~A~~aGIpVv~~ 87 (294)
T cd06316 17 QVRGAKDEFAKLGIEVVATTDAQFDPAKQ--VADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999998399899966998899999--999999998599999993888678799999999819967983
No 81
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=80.00 E-value=3.2 Score=21.73 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=81.8
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHC--CCE-EEEEECCCCH--HHHHHCCCC
Q ss_conf 4288835789999898634754333321000012321079999----975300--101-1121013200--677630124
Q gi|255764473|r 51 FEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTA----KVLSRY--VDA-IVMRTTNHSR--LLELTEYAT 121 (306)
Q Consensus 51 F~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~----~~ls~~--~D~-iviR~~~~~~--~~~~~~~~~ 121 (306)
+.+++....++||- +||.-.+|.+. |.++...= +.|+.- +|+ +|+-.|+.+. ..-+++.+.
T Consensus 245 ~~~~~~~~~C~FEy---------IYFaRpdS~~~-g~~Vy~~R~~lG~~LA~e~~~~~DiVi~VPdSg~~aa~gya~~sg 314 (474)
T PRK06388 245 KLDGDKVAHCMFEY---------VYFSRPDSIID-GINVYQARVRMGMRLAKESPVEADVVVPVPDSGRSQAIGFSMASG 314 (474)
T ss_pred ECCCCCCCCCEEEE---------HHHCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 68999866545550---------23238873028-818999999999998634798888899578861999999998659
Q ss_pred CCEECCCCC-C------CHHHHHHHHHHHHHH---HCCCCCCCCEEEECC---CCCCCCCHHHCCCCCCEE---EEEECH
Q ss_conf 412404333-2------024678765576642---001336773046104---555543101001233125---765200
Q gi|255764473|r 122 VPVINALTD-N------THPCQIIADIMTFEE---HRGSVKGKLFSWSGD---GNNILHSLIEGAARFNYL---LNIATP 185 (306)
Q Consensus 122 vpvINa~~~-~------~HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd---~~~v~hS~i~~~~~~g~~---v~~~~P 185 (306)
+|...+.-. . =-|+|.+=+.-.=.+ .+..++|++|..|-| .+++..+.+..+.+.|++ +.+++|
T Consensus 315 ip~~~glikn~y~gRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sP 394 (474)
T PRK06388 315 IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred CCCHHCEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 94110056535447652388677787444266665024417988999816616566799999999977998899997899
Q ss_pred HCCCCC
Q ss_conf 001321
Q gi|255764473|r 186 IGSEPR 191 (306)
Q Consensus 186 ~~~~~~ 191 (306)
+-..|.
T Consensus 395 pi~~pC 400 (474)
T PRK06388 395 HIIAPC 400 (474)
T ss_pred CCCCCC
T ss_conf 967886
No 82
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=79.93 E-value=3.5 Score=21.42 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=60.4
Q ss_pred EEEEECCCCH--HHHHHCCCCCCEECCCCC-C-----C-HHHHHHHHHHHHHH---HCCCCCCCCEEEECC---CCCCCC
Q ss_conf 1121013200--677630124412404333-2-----0-24678765576642---001336773046104---555543
Q gi|255764473|r 103 IVMRTTNHSR--LLELTEYATVPVINALTD-N-----T-HPCQIIADIMTFEE---HRGSVKGKLFSWSGD---GNNILH 167 (306)
Q Consensus 103 iviR~~~~~~--~~~~~~~~~vpvINa~~~-~-----~-HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd---~~~v~h 167 (306)
+|+=.|+.+. ...+++.+.+|.-.+.-. . . -|+|.+=+...-.+ ....++|++|.+|=| -+++..
T Consensus 296 vVi~VPdSg~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~i~~~i~gK~vvlVDDSIVRGtT~k 375 (503)
T PRK09246 296 VVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSE 375 (503)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEECCHHHCCCCEEEEEECCEECCCCHH
T ss_conf 25007997188999999971996120121036557677698688999867652003643156976999845531164199
Q ss_pred CHHHCCCCCCEE---EEEECHHCCCCC
Q ss_conf 101001233125---765200001321
Q gi|255764473|r 168 SLIEGAARFNYL---LNIATPIGSEPR 191 (306)
Q Consensus 168 S~i~~~~~~g~~---v~~~~P~~~~~~ 191 (306)
..+..+...|++ +.+++|+-..|.
T Consensus 376 ~Iv~~Lr~aGAkeVh~riasPpi~~Pc 402 (503)
T PRK09246 376 QIVQMARDAGAKKVYFASAAPPVRYPN 402 (503)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 999999975998899996799857877
No 83
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=79.88 E-value=2.6 Score=22.25 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECCCCC
Q ss_conf 5789999898634754333321000012321079999975300101112101320067---7630124412404333
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINALTD 130 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa~~~ 130 (306)
.-+-.++.+++++|.+++.++.....-..-+-++ ..+++.+|+|++-..+...+. +-+....||||..-++
T Consensus 16 ~~~~G~~~~A~~~G~~~~v~d~~~d~~~Q~~~i~---~~i~~~vDgIii~p~d~~~~~~~l~~a~~aGIPVV~~d~~ 89 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGGDDAKQADQID---QAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH---HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999974998999739999999999999---9998599999994687144489999999859978998177
No 84
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=79.66 E-value=1.6 Score=23.75 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.9
Q ss_pred CCCCCCEEEEEEC
Q ss_conf 4437987999942
Q gi|255764473|r 40 KPLSGKVLAMIFE 52 (306)
Q Consensus 40 ~~l~gk~i~~lF~ 52 (306)
..|+||.|+.+=|
T Consensus 33 ~~LKgKkI~IiG~ 45 (489)
T PRK05225 33 SYLKGKKIVIVGC 45 (489)
T ss_pred HHHCCCEEEEECC
T ss_conf 6752885999803
No 85
>KOG0069 consensus
Probab=79.63 E-value=3.4 Score=21.51 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCCHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHHC---------------------CCCCCCCEEEECCCCCC
Q ss_conf 320067763012441240433320246--7876557664200---------------------13367730461045555
Q gi|255764473|r 109 NHSRLLELTEYATVPVINALTDNTHPC--QIIADIMTFEEHR---------------------GSVKGKLFSWSGDGNNI 165 (306)
Q Consensus 109 ~~~~~~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~~---------------------g~l~~~~i~~vGd~~~v 165 (306)
++-.+... +.-.|.|=|..+...--| -++..++.+.+.+ .+++|++|.++|-+ ++
T Consensus 96 D~vDl~a~-~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G-~I 173 (336)
T KOG0069 96 DHVDLEAA-RKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLG-RI 173 (336)
T ss_pred CHHHHHHH-HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC-HH
T ss_conf 32138989-86596686058742178899999999999851024344432577665577544666567779996274-78
Q ss_pred CCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCC
Q ss_conf 43101001233125765200001321000024320133222136646630687332221000000220133310011123
Q gi|255764473|r 166 LHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQ 245 (306)
Q Consensus 166 ~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~ 245 (306)
......-+..||+.+....- ..++.+.. ...+.+ ..|.++-+..+|+|..-+ .++.++. --
T Consensus 174 G~~ia~rL~~Fg~~i~y~~r--~~~~~~~~---~~~~~~---~~d~~~~~~~sD~ivv~~--pLt~~T~---------~l 234 (336)
T KOG0069 174 GKAIAKRLKPFGCVILYHSR--TQLPPEEA---YEYYAE---FVDIEELLANSDVIVVNC--PLTKETR---------HL 234 (336)
T ss_pred HHHHHHHHHHCCCEEEEECC--CCCCHHHH---HHHCCC---CCCHHHHHHHCCEEEEEC--CCCHHHH---------HH
T ss_conf 89999963532662554113--57763668---874354---367888873288799926--8977888---------77
Q ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 368899628987299259998748735767
Q gi|255764473|r 246 VNLSLMSMAHPDALFMHCLPAHRGEEVINE 275 (306)
Q Consensus 246 i~~~~l~~a~~~~~vmHplP~~rg~EI~~~ 275 (306)
+|.+.++++|+.+++--+. ||-=|+.+
T Consensus 235 iNk~~~~~mk~g~vlVN~a---RG~iide~ 261 (336)
T KOG0069 235 INKKFIEKMKDGAVLVNTA---RGAIIDEE 261 (336)
T ss_pred HHHHHHHHCCCCEEEEECC---CCCCCCHH
T ss_conf 6099998647976999646---42402599
No 86
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.26 E-value=1.6 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=18.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 44379879999428883578999989863475433
Q gi|255764473|r 40 KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTI 74 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~ 74 (306)
.+|+||+|+.+=+-+--|- -....+.-|.+|+
T Consensus 14 ~~LkgK~iaIIGYGsQG~a---halNlRDSGlnVi 45 (338)
T COG0059 14 DLLKGKKVAIIGYGSQGHA---QALNLRDSGLNVI 45 (338)
T ss_pred HHHCCCEEEEEECCHHHHH---HHHHHHHCCCCEE
T ss_conf 5654986999902708788---8742242487479
No 87
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.13 E-value=2.4 Score=22.55 Aligned_cols=123 Identities=14% Similarity=0.038 Sum_probs=62.6
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCC---CCCCE----EEEEECHHCCC-C----CCCCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 01336773046104555543101001---23312----57652000013-2----1000024320133222136646630
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGA---ARFNY----LLNIATPIGSE-P----RNEYLNWARNQGASVALFHDAVQAV 215 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~---~~~g~----~v~~~~P~~~~-~----~~~~~~~~~~~g~~i~~~~d~~eal 215 (306)
.+.+.-++|++.|-.+-++.|++..+ ..||. .+++..-+... . .-++.+-+-..-.++..++|+++|+
T Consensus 118 ~~~~~Pl~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF 197 (452)
T cd05295 118 RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAF 197 (452)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHCCCCCCCEEEECCHHHHH
T ss_conf 71588746999468447689999997376734898717999547740778863633567653440017106767999985
Q ss_pred CCCCCCCC-CCEEECCCCCHHHH-HHCCCCCCCCHHHH-HCCCCCCEEECCC--CCCCCC
Q ss_conf 68733222-10000002201333-10011123368899-6289872992599--987487
Q gi|255764473|r 216 KGAHCVFT-DTWISMNQEFKARE-EHVFQPFQVNLSLM-SMAHPDALFMHCL--PAHRGE 270 (306)
Q Consensus 216 ~~aD~V~~-~~~~~~~~~~~~~~-~~~~~~y~i~~~~l-~~a~~~~~vmHpl--P~~rg~ 270 (306)
+++|+++. +...+.......+. +.-..-|+.-.+.+ +.|+++++|+=-| |+|-+-
T Consensus 198 ~dad~ailvga~pr~~gmer~dlL~~n~~IF~~qG~aln~~Ak~~vKVLVvG~nPaNtNa 257 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKT 257 (452)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 579889995884788887188999987799999999998544568669996788651688
No 88
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.12 E-value=1.3 Score=24.19 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=6.2
Q ss_pred HHCCCCCCCCHHHH
Q ss_conf 10011123368899
Q gi|255764473|r 238 EHVFQPFQVNLSLM 251 (306)
Q Consensus 238 ~~~~~~y~i~~~~l 251 (306)
.+|+.+|+-..+.+
T Consensus 245 ~~~~~~~g~~~~~~ 258 (308)
T PRK06129 245 ADYAQRYGPMYERM 258 (308)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999873899999
No 89
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=77.90 E-value=1.8 Score=23.33 Aligned_cols=66 Identities=23% Similarity=0.182 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 36773046104555543101001233125765200001321000024320133222136646630687332221
Q gi|255764473|r 151 VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 151 l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~ 224 (306)
+++++|+++|-++ =.|....=+.--|++|.+.--++ ....+.+++.|-++ .+..|+.+++|+|+..
T Consensus 2 lk~k~iaViGYGs-QG~AhAlNLrDSG~~V~vglr~~----s~S~~kA~~dGf~v---~~~~eA~~~aDiim~L 67 (165)
T pfam07991 2 LKGKKIAVIGYGS-QGHAHALNLRDSGVNVIVGLRPG----SKSWEKAKKDGFEV---YTVAEAVKKADVVMIL 67 (165)
T ss_pred CCCCEEEEEEECC-HHHHHHHHHHHCCCCEEEEECCC----CHHHHHHHHCCCCC---CCHHHHHHHCCEEEEE
T ss_conf 6799899993461-64888723053499789997899----86799999789700---4899998657899983
No 90
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=77.62 E-value=0.89 Score=25.36 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 64200133677304610455554310100123312-57652000013210000243201332221366466306873322
Q gi|255764473|r 144 FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVF 222 (306)
Q Consensus 144 i~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~ 222 (306)
..+.+++++++++.++|-+. +....+..+...|. ++.++.... +.....+...|.+..-+.++.+.+.++|+|+
T Consensus 169 a~~~~~~l~~~~vLviGaGe-m~~l~~~~L~~~g~~~i~v~nRt~----~ra~~la~~~g~~~~~~~~l~~~l~~~Dvvi 243 (311)
T cd05213 169 AEKIFGNLKGKKVLVIGAGE-MGELAAKHLAAKGVAEITIANRTY----ERAEELAKELGGNAVPLDELLELLNEADVVI 243 (311)
T ss_pred HHHHHCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHCCCEEECHHHHHHHHHHCCEEE
T ss_conf 99871872116799986879-999999999965998259976867----8999999974989972999999997689999
Q ss_pred CCCEEECCCCCHHHHHHCCCCCCCCHHHHHC---CCCCCEEECCCCCCCCCCCCHHHHCCCCCHHH
Q ss_conf 2100000022013331001112336889962---89872992599987487357679679971068
Q gi|255764473|r 223 TDTWISMNQEFKAREEHVFQPFQVNLSLMSM---AHPDALFMHCLPAHRGEEVINEVLDGPQSVVF 285 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~---a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~~ 285 (306)
+-+= + ..|.++.+.+.. -+|-.+|=-..| |+ |+.+|.+-|...++
T Consensus 244 saT~-s-------------~~~~~~~~~~~~~~~~~~~~iiDLavP--Rd--id~~v~~l~~v~L~ 291 (311)
T cd05213 244 SATG-A-------------PHYAKIVERAMKKRSGKPRLIVDLAVP--RD--IEPEVGELEGVRLY 291 (311)
T ss_pred EECC-C-------------CCCHHHHHHHHHHCCCCCEEEEEECCC--CC--CCHHHCCCCCEEEE
T ss_conf 9279-9-------------962035999975347997699991799--98--77334776997998
No 91
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=77.62 E-value=5.9 Score=19.99 Aligned_cols=239 Identities=17% Similarity=0.108 Sum_probs=127.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCHHHHHHHHHHHHCCCCCCCCCCC-----C--
Q ss_conf 7844589999999999999999665236665443798799994-2888357899998986347543333210-----0--
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIF-EKPSTRTRVSFEVAMKHLGGDTIFLSGS-----E-- 80 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF-~e~StRTR~SFe~A~~~LG~~~~~~~~~-----~-- 80 (306)
+++.++.+.+|+.--..---+....+.+...+||+|.+|+.-. .+ .-|-. +--.-+.+|+.|..-+.. +
T Consensus 10 isla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t--~kTAv-LietL~a~GAeV~~a~cNplSTqD~v 86 (420)
T COG0499 10 ISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMT--AKTAV-LIETLKAGGAEVRWASCNPLSTQDDV 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEEEEH--HHHHH-HHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 2333554677899986586999999987522897765789987315--87999-99999855856998527887666789
Q ss_pred -----------CCCCCCCCHHHHHH----HHHH--------CCCEEEEEECCC------------------CHHHHHHCC
Q ss_conf -----------00123210799999----7530--------010111210132------------------006776301
Q gi|255764473|r 81 -----------MQLGRAETIGDTAK----VLSR--------YVDAIVMRTTNH------------------SRLLELTEY 119 (306)
Q Consensus 81 -----------ss~~kgEsl~Dt~~----~ls~--------~~D~iviR~~~~------------------~~~~~~~~~ 119 (306)
.-..|||+.++... +|+- ..|++.+=|... ..++.+.+.
T Consensus 87 aaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~am~~~ 166 (420)
T COG0499 87 AAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAMEKD 166 (420)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99987505961799707878999999999956599879824732021000054878877428775342289999989766
Q ss_pred --CCCCEECCCCC-------CCHHH-HHHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCC
Q ss_conf --24412404333-------20246-78765576642001-336773046104555543101001233125765200001
Q gi|255764473|r 120 --ATVPVINALTD-------NTHPC-QIIADIMTFEEHRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGS 188 (306)
Q Consensus 120 --~~vpvINa~~~-------~~HPt-QaL~D~~Ti~e~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~ 188 (306)
..+|+||--|. +-|-| |.+.|-. .+.-+ -+.|++++.+|- +.+.+--...+.-+|++|.+.--.
T Consensus 167 G~L~fPai~VNDs~tK~~FDNrYGtgqS~~DgI--~RaTn~liaGK~vVV~GY-G~vGrG~A~~~rg~GA~ViVtEvD-- 241 (420)
T COG0499 167 GVLKFPAINVNDSVTKSLFDNRYGTGQSLLDGI--LRATNVLLAGKNVVVAGY-GWVGRGIAMRLRGMGARVIVTEVD-- 241 (420)
T ss_pred CCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHH--HHHHCEEECCCEEEEECC-CCCCHHHHHHHHCCCCEEEEEECC--
T ss_conf 973235586043444131456656412489999--864200114866999635-644366999862289869998248--
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 32100002432013322213664663068733222100000022013331001112336889962898729925999874
Q gi|255764473|r 189 EPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHR 268 (306)
Q Consensus 189 ~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~r 268 (306)
| -..-.+.-.|..+ ..+++|.+.+|++.|.. +.. =-++.+-+...|+++++---|- -
T Consensus 242 -P--I~AleA~MdGf~V---~~m~~Aa~~gDifiT~T----Gnk-----------dVi~~eh~~~MkDgaIl~N~GH--F 298 (420)
T COG0499 242 -P--IRALEAAMDGFRV---MTMEEAAKTGDIFVTAT----GNK-----------DVIRKEHFEKMKDGAILANAGH--F 298 (420)
T ss_pred -C--HHHHHHHHCCCEE---EEHHHHHHCCCEEEECC----CCC-----------CCCCHHHHHHCCCCEEEECCCC--C
T ss_conf -1--7889986357188---78667442189899866----885-----------7578999972648849962656--4
Q ss_pred CCCCCHHHHC
Q ss_conf 8735767967
Q gi|255764473|r 269 GEEVINEVLD 278 (306)
Q Consensus 269 g~EI~~~v~d 278 (306)
++||+-..+.
T Consensus 299 d~EI~~~~L~ 308 (420)
T COG0499 299 DVEIDVAGLE 308 (420)
T ss_pred CEEECHHHHH
T ss_conf 0000688888
No 92
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=77.25 E-value=6 Score=19.93 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=84.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC-CHHHHHHCCCC-CCEECCCCCCCH---H
Q ss_conf 99989863475433332100001232107999997530010-111210132-00677630124-412404333202---4
Q gi|255764473|r 61 SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVD-AIVMRTTNH-SRLLELTEYAT-VPVINALTDNTH---P 134 (306)
Q Consensus 61 SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D-~iviR~~~~-~~~~~~~~~~~-vpvINa~~~~~H---P 134 (306)
..+..+.+-|.+.+.++.+... .+++..+.+.+....+ .-|+=-|.+ ..+..-+...- ..++|+.+..+. -
T Consensus 16 ~l~~~~~~sgtDai~VGGS~~~---~~~~~~~v~~ik~~~~~~PvilfPg~~~~is~~aDa~lf~sllNs~n~~~lig~~ 92 (219)
T cd02812 16 EIAKLAEESGTDAIMVGGSDGV---SSTLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQ 92 (219)
T ss_pred HHHHHHHHHCCCEEEECCCCCC---HHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCEEEEEEEECCCCCHHHHHHH
T ss_conf 9999999769999999375574---4779999999997378999899579866568677868868753389923677889
Q ss_pred HHHHHHHHHH---HHHC--CC--C-CCCCEEEECCCC-----CCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCC
Q ss_conf 6787655766---4200--13--3-677304610455-----55431010012331257652000013210000243201
Q gi|255764473|r 135 CQIIADIMTF---EEHR--GS--V-KGKLFSWSGDGN-----NILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQ 201 (306)
Q Consensus 135 tQaL~D~~Ti---~e~~--g~--l-~~~~i~~vGd~~-----~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~ 201 (306)
-++.--+-.+ .|.. |. + .|.++++++... ..+.+...++..||+.+...--.+-.-+++.+...++.
T Consensus 93 ~~aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg~~~iYLEgSGa~v~~e~V~~vk~~ 172 (219)
T cd02812 93 AEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKV 172 (219)
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99999874316763220057899879981488824647999899999999999829938999568997999999999984
Q ss_pred --------CCCCCCCCCHHHHCC-CCCCCCCCCEE
Q ss_conf --------332221366466306-87332221000
Q gi|255764473|r 202 --------GASVALFHDAVQAVK-GAHCVFTDTWI 227 (306)
Q Consensus 202 --------g~~i~~~~d~~eal~-~aD~V~~~~~~ 227 (306)
|..+.-.....+.++ +||.|.+....
T Consensus 173 l~~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~i 207 (219)
T cd02812 173 LGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCE
T ss_conf 67970999289799999999998699999988722
No 93
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.06 E-value=3.3 Score=21.66 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=47.1
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECC
Q ss_conf 4288835789999898634754333321000012321079999975300101112101320067---7630124412404
Q gi|255764473|r 51 FEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINA 127 (306)
Q Consensus 51 F~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa 127 (306)
||+. -+-.++.|++++|.++.+..+...+..+-- ...-..++..+|+|++-..+...+. +-+.-..||||.-
T Consensus 14 f~~~---v~~G~~~aA~~~Gv~v~~~~~~~~d~~~Q~--~~i~~~i~~~vDaIii~p~~~~~~~~~i~~a~~agIpVv~~ 88 (271)
T cd06312 14 FWTV---VKNGAEDAAKDLGVDVEYRGPETFDVADMA--RLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISF 88 (271)
T ss_pred HHHH---HHHHHHHHHHHHCCEEEEEECCCCCHHHHH--HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8999---999999999996998999968989999999--99999997599989993788300269999999659869999
Q ss_pred CCC
Q ss_conf 333
Q gi|255764473|r 128 LTD 130 (306)
Q Consensus 128 ~~~ 130 (306)
-++
T Consensus 89 ds~ 91 (271)
T cd06312 89 NAG 91 (271)
T ss_pred ECC
T ss_conf 478
No 94
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=76.91 E-value=6.1 Score=19.87 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=54.4
Q ss_pred EEEEECCCCC-HHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHC-CCEEEEEECCC----CHHHH
Q ss_conf 9999428883-578999989863475433332-----1000012321079999975300-10111210132----00677
Q gi|255764473|r 47 LAMIFEKPST-RTRVSFEVAMKHLGGDTIFLS-----GSEMQLGRAETIGDTAKVLSRY-VDAIVMRTTNH----SRLLE 115 (306)
Q Consensus 47 i~~lF~e~St-RTR~SFe~A~~~LG~~~~~~~-----~~~ss~~kgEsl~Dt~~~ls~~-~D~iviR~~~~----~~~~~ 115 (306)
|+.+|.+++. ..+.+|+.|+.+.-...-.+. +..-.+....|+.=+.++...+ -++.+|=+|.+ ..+..
T Consensus 2 IGaiF~~~~~~~~e~Af~~Ai~~vN~~~~~l~~~~L~~~i~~~~~~dsF~~~~~~C~~l~~GV~AI~Gp~s~~~~~~v~s 81 (327)
T cd06382 2 IGAIFDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEASSIVQS 81 (327)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf 68885589975899999999999755876578957999987446698179999999988549389996787237899999
Q ss_pred HHCCCCCCEECC-CCC-----C-----CHHH-----HHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 630124412404-333-----2-----0246-----78765576642001336773046104
Q gi|255764473|r 116 LTEYATVPVINA-LTD-----N-----THPC-----QIIADIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 116 ~~~~~~vpvINa-~~~-----~-----~HPt-----QaL~D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
++....||.|-- .+. . -||. ||++|+..-..+ +...+.|-.|
T Consensus 82 ic~~l~IP~i~~~~~~~~~~~~~~~i~l~P~~~~l~~Ai~dlv~~~~W----~~v~~iY~~d 139 (327)
T cd06382 82 ICDAKEIPHIQTRWDPEPKSNRQFTINLYPSNADLSRAYADIVKSFNW----KSFTIIYESA 139 (327)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC----CEEEEEEECC
T ss_conf 874316852683578655556576388348888999999999986798----4899999684
No 95
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.03 E-value=3.2 Score=21.74 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 475433332100001232107999
Q gi|255764473|r 69 LGGDTIFLSGSEMQLGRAETIGDT 92 (306)
Q Consensus 69 LG~~~~~~~~~~ss~~kgEsl~Dt 92 (306)
-|++++.+.++- ....|||-.|.
T Consensus 75 ~~aDvViitaG~-prkpG~tR~DL 97 (323)
T cd00704 75 KDVDVAILVGAF-PRKPGMERADL 97 (323)
T ss_pred CCCCEEEECCCC-CCCCCCCHHHH
T ss_conf 799889982787-88999827999
No 96
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=76.00 E-value=1.5 Score=23.84 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 64200133677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 144 FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 144 i~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
|.-.+=+++|+++.++|.++ |+--.+..+..+|..+++++|.-. +++.+.. ...+....=..+.++++++|++
T Consensus 4 ~~Pifl~l~~k~vLVvGGG~-VA~rK~~~Ll~~ga~VtVvsp~~~---~el~~l~---~i~~~~r~~~~~dl~~~~lVia 76 (157)
T PRK06719 4 MYPLMFNLHNKVVVIIGGGK-IAYRKASGLKDTGAFVTVVSPEIC---EEMKELP---YITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCEEEEECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCC---HHHHHCC---CEEEECCCCCHHHHCCCEEEEE
T ss_conf 43068975998799988989-999999999878796999999868---9998455---7088704678468378439998
Q ss_pred CCEEECCCCCHHHH-HHCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHH
Q ss_conf 10000002201333-10011123-368899628987299259998748735767967997106
Q gi|255764473|r 224 DTWISMNQEFKARE-EHVFQPFQ-VNLSLMSMAHPDALFMHCLPAHRGEEVINEVLDGPQSVV 284 (306)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~~~y~-i~~~~l~~a~~~~~vmHplP~~rg~EI~~~v~d~~~s~~ 284 (306)
-. ++...... ...-...+ +|.. + -++.+-|.-|-=++|| ++.-.|.-+-+|-.
T Consensus 77 AT----dd~~lN~~i~~~a~~~~lvN~~--d-~~~~~dF~~Paiv~rg-~l~IaIST~G~SP~ 131 (157)
T PRK06719 77 AT----NQHAVNMMVKQAAHDFQWVNVV--S-DGTESSFHTPGVIRND-EYVVTISTSGKDPS 131 (157)
T ss_pred CC----CCHHHHHHHHHHHHHCCCEEEE--C-CCCCCCEEEEEEEEEC-CEEEEEECCCCCCH
T ss_conf 68----9989999999999778958982--8-9888976870389858-97999988998929
No 97
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.85 E-value=4.7 Score=20.59 Aligned_cols=79 Identities=25% Similarity=0.321 Sum_probs=52.0
Q ss_pred HHHHCCCCCCCCEEEECC---C--CCCCCC----HHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHH
Q ss_conf 642001336773046104---5--555431----0100123312576520000132100002432013322213664663
Q gi|255764473|r 144 FEEHRGSVKGKLFSWSGD---G--NNILHS----LIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQA 214 (306)
Q Consensus 144 i~e~~g~l~~~~i~~vGd---~--~~v~hS----~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~ea 214 (306)
|.++.+ ++|++|++.|= + -++.-| .+..+...|+++..--|...+. ++.....+.+..++.++
T Consensus 302 i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~-------~~~~~~~~~~~~~~~~~ 373 (414)
T COG1004 302 ILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMEN-------AFRNFPDVELESDAEEA 373 (414)
T ss_pred HHHHCC-CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHH-------HHHCCCCCEEECCHHHH
T ss_conf 998468-7786799998741699842000317999999997799899978254377-------77307871674899999
Q ss_pred CCCCCCCCCC-CEEECC
Q ss_conf 0687332221-000000
Q gi|255764473|r 215 VKGAHCVFTD-TWISMN 230 (306)
Q Consensus 215 l~~aD~V~~~-~~~~~~ 230 (306)
++++|++..- .|....
T Consensus 374 ~~~aDaivi~tew~ef~ 390 (414)
T COG1004 374 LKGADAIVINTEWDEFR 390 (414)
T ss_pred HHHCCEEEEECCHHHHH
T ss_conf 84098999955579875
No 98
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=75.26 E-value=3.8 Score=21.25 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHC--CCE-EEEEECCCCH--HHHHHCCCCCCE
Q ss_conf 8835789999898634754333321000012321079999----975300--101-1121013200--677630124412
Q gi|255764473|r 54 PSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTA----KVLSRY--VDA-IVMRTTNHSR--LLELTEYATVPV 124 (306)
Q Consensus 54 ~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~----~~ls~~--~D~-iviR~~~~~~--~~~~~~~~~vpv 124 (306)
++.+.-++||- +||.-.+|.+. |.++.+.= +.|+.- +|+ +|+-.|+.+. ..-+++.+.+|.
T Consensus 234 ~~~~~~C~FEy---------IYFaRpdS~~~-g~~Vy~~R~~~G~~LA~e~~~~~D~Vi~VPdSg~~aA~gyA~~sgip~ 303 (489)
T PRK07847 234 EPTPKGCVFEY---------VYLARPDSTIA-GRSVHAARVEIGRRLAREHPVEADLVIPVPESGTPAAVGYAQESGIPF 303 (489)
T ss_pred CCCCCCCEEEE---------HHHCCCCCCCC-CEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCH
T ss_conf 88875415650---------24318971147-818999999999998743788899798569971999999999739954
Q ss_pred ECCCCC-C------CHHHHHHHHHHHHHHH---CCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHHCC
Q ss_conf 404333-2------0246787655766420---013367730461045---55543101001233125---765200001
Q gi|255764473|r 125 INALTD-N------THPCQIIADIMTFEEH---RGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPIGS 188 (306)
Q Consensus 125 INa~~~-~------~HPtQaL~D~~Ti~e~---~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~~~ 188 (306)
-.+.-. . =-|+|.+=+.-.=.+. +..++|++|.+|-|. +++..+.+..+...|++ +.+++|+-.
T Consensus 304 ~~gliKn~yvgRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~ 383 (489)
T PRK07847 304 GQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVK 383 (489)
T ss_pred HHCEEECCCCCCCEECCCHHHHHHCCCEEEECCHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 44200146147401378665666365147740264177987999847835667799999999976998899996899857
Q ss_pred CCC
Q ss_conf 321
Q gi|255764473|r 189 EPR 191 (306)
Q Consensus 189 ~~~ 191 (306)
.|.
T Consensus 384 ~PC 386 (489)
T PRK07847 384 WPC 386 (489)
T ss_pred CCC
T ss_conf 887
No 99
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=75.14 E-value=5.9 Score=19.95 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=75.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHH-C-CCE-EEEEECCCCH--HHHHHCCCCC
Q ss_conf 2888357899998986347543333210000123210799999----7530-0-101-1121013200--6776301244
Q gi|255764473|r 52 EKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK----VLSR-Y-VDA-IVMRTTNHSR--LLELTEYATV 122 (306)
Q Consensus 52 ~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~----~ls~-~-~D~-iviR~~~~~~--~~~~~~~~~v 122 (306)
.+++.+.-++||- +||.-.+|.+. |.++.+.=+ .|+. + +|+ +|+-.|+.+. ..-+++.+.+
T Consensus 246 ~~~~~~~~C~FE~---------IYFaRpdS~i~-g~~Vy~~R~~lG~~LA~e~~~~~DvV~~VPdSg~~aA~gya~~sgi 315 (472)
T PRK05793 246 SEKTKCQTCAFEY---------IYFARPDSVID-GISVYESRVRAGEQLYKEYPVDADIVIGVPDSGIPAAIGYAKASGI 315 (472)
T ss_pred CCCCCCCCCEEEE---------EECCCCCCEEC-CEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC
T ss_conf 5888776653765---------20138973047-7089999999999987357888887981799759999999986199
Q ss_pred CEECCCCC-C------CHHHHHHHHHHHHHH---HCCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHH
Q ss_conf 12404333-2------024678765576642---0013367730461045---55543101001233125---7652000
Q gi|255764473|r 123 PVINALTD-N------THPCQIIADIMTFEE---HRGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPI 186 (306)
Q Consensus 123 pvINa~~~-~------~HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~ 186 (306)
|.-.+.-. . =-|+|.+=+.--=.+ .+..++|++|+.|=|. +++..-.+..+...|++ +.+++|+
T Consensus 316 p~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri~sPp 395 (472)
T PRK05793 316 PYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRVSSPP 395 (472)
T ss_pred CHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 43440122052155576886778975146232320210069869998077055767999999999779998999968999
Q ss_pred CCCCC
Q ss_conf 01321
Q gi|255764473|r 187 GSEPR 191 (306)
Q Consensus 187 ~~~~~ 191 (306)
-..|.
T Consensus 396 i~~pc 400 (472)
T PRK05793 396 VKYPC 400 (472)
T ss_pred CCCCC
T ss_conf 68876
No 100
>TIGR01723 hmd_TIGR coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase; InterPro: IPR010062 The N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase system of methanogenic archaea is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd, IPR004889 from INTERPRO) and F420-dependent methylenetetrahydromethanopterin dehydrogenase (IPR002844 from INTERPRO) , . Hmd is an iron-sulphur-cluster-free enzyme that contains an intrinsic CO ligand bound to iron . The Hmd enzymes can be divide into two distinct subgroups: one has been experimentally characterised as H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase (Hmd or HmdI), and the other one contains isozymes that have not been experimentally characterised (HmdII and HmdIII). Because all three isozyme forms are present in each of the corresponding sequenced genomes, it has been suggested that HmdII and HmdIII may not exhibit Hmd activity and may have a different biological function . This entry represents the experimentally characterised (HmdI) subgroup of the N(5),N(10)-methylenetetrahydromethanopterin dehydrogenases.; GO: 0047068 N5N10-methenyltetrahydromethanopterin hydrogenase activity, 0019386 methanogenesis from carbon dioxide.
Probab=75.11 E-value=3.1 Score=21.77 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCC-CEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
Q ss_conf 336773046104555543101001233-1257652000013210000243201332221366466306873322210000
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARF-NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWIS 228 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~ 228 (306)
+++|-.=.+++....+++....-+.|= ..-+++..|+...- ...+.+++|-.||+++||+|++ |..
T Consensus 93 H~~G~PE~iMP~iRe~V~~~A~elPKPP~gaIH~~~PEe~ed-----------~l~~~vTtDD~EAV~dAD~ii~--WlP 159 (359)
T TIGR01723 93 HLEGNPEDIMPKIREVVNEVAKELPKPPKGAIHFVHPEEMED-----------DLGLKVTTDDREAVEDADIIIT--WLP 159 (359)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC-----------CCCEEEECCHHHHHCCCCEEEE--ECC
T ss_conf 137885002426689999998507768542061257302214-----------3560561470887507977998--358
Q ss_pred CCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 00220133310011123368899628987299259
Q gi|255764473|r 229 MNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHC 263 (306)
Q Consensus 229 ~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHp 263 (306)
-|+.-. .+=.++.+..++.++|-|-
T Consensus 160 KG~~QP----------dI~~K~~D~I~eGaIV~~a 184 (359)
T TIGR01723 160 KGDVQP----------DIIKKFIDDIPEGAIVTHA 184 (359)
T ss_pred CCCCCH----------HHHHHHHHCCCCCCEECCC
T ss_conf 888862----------6899887417998467056
No 101
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=75.01 E-value=4.2 Score=20.93 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECC
Q ss_conf 57899998986347543333210000123210799999753001011121013200---677630124412404
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINA 127 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa 127 (306)
+..-.+|.+++++|..++..+...+ ..+- +...-..++..+|+|++-..+... ..+.++...+|||.-
T Consensus 16 ~~~~g~e~~A~e~G~~v~~~~~~~d-~~~Q--~~~i~~lia~~vD~Iii~p~d~~a~~~~l~~a~~agIPVV~~ 86 (288)
T cd01538 16 RDRPNFEAALKELGAEVIVQNANGD-PAKQ--ISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC-HHHH--HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999976998999718999-9999--999999998499899986775344399999999759999998
No 102
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=73.82 E-value=7.3 Score=19.35 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHCCCCCCCCC-CCC-----------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCC-CC
Q ss_conf 863475433332-100-----------00123210799999753001011121013200677630124412404333-20
Q gi|255764473|r 66 MKHLGGDTIFLS-GSE-----------MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTD-NT 132 (306)
Q Consensus 66 ~~~LG~~~~~~~-~~~-----------ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~-~~ 132 (306)
...+|.++..+. .++ .-...|-+++|..++=+....+.+-+.........+.+...+|.++-... .-
T Consensus 178 l~~~Gl~v~~l~d~s~~ld~~~~~~~~~~~~ggt~~~~i~~~~~A~~ni~~~~~~~~~~a~~L~~~~giP~~~~~~P~G~ 257 (428)
T cd01965 178 LEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILFPTPIGL 257 (428)
T ss_pred HHHCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCEEECCCCCCH
T ss_conf 99849916981571211477666765201689986999986565999999888899999999999859984843776467
Q ss_pred HHH-----------------------HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 246-----------------------787655766420013367730461045555431010012331257652
Q gi|255764473|r 133 HPC-----------------------QIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIA 183 (306)
Q Consensus 133 HPt-----------------------QaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~ 183 (306)
+.| +-+.|.+. +....+.|+++++.||+.. +.++...+.-+|+++..+
T Consensus 258 ~~T~~~l~~la~~~g~~~~~~~~~er~r~~d~~~--d~~~~l~gkrvai~~~~~~-~~~l~~~L~elG~~~~~~ 328 (428)
T cd01965 258 KATDEFLRALSKLSGKPIPEELERERGRLLDAML--DSHFYLGGKRVAIAGDPDL-LLGLSRFLLEMGAEPVAA 328 (428)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEE
T ss_conf 9999999999998489955999999999999999--9998607978999888188-999999999859956799
No 103
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=73.65 E-value=5.7 Score=20.08 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECC
Q ss_conf 89999898634754333321000012321079999975300101112101320067---7630124412404
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINA 127 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa 127 (306)
+--+|.|++++|...+..+....+-...+.+.+....++..+|+|++=..+...+. +-+....+|||.-
T Consensus 18 ~~Gie~aa~~~~~~~v~v~~~~~~~~d~~~~~~~l~~i~~~vDgiii~~~d~~~~~~~i~~a~~~GIPVV~~ 89 (275)
T cd06307 18 AAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAPDHPQVRAAVARLAAAGVPVVTL 89 (275)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999998656864999998779899999999999985589889998998177899999999879849997
No 104
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=73.15 E-value=2.5 Score=22.45 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=31.4
Q ss_pred CCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 677304610455554310100123312576520000132100002432013322213664663068733222
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
+++++.+||-+. |+.--+..+-+.|+.+++++|.- .+++.+.++..+..+....=-.+.+++++.|+.
T Consensus 23 ~klkvLVVGGG~-VA~RKi~~Ll~agA~VtVVSP~~---~~el~~L~~~~~I~~i~r~y~~~dL~~~~LVIa 90 (222)
T PRK05562 23 NKIKVLVIGGGK-AAFIKGKTFLKKGCYVEILSKEF---SKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIII 90 (222)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCC---CHHHHHHHHCCCEEEEECCCCHHHCCCCCEEEE
T ss_conf 676699999879-99999999987899899987866---889999997598699968679778088739999
No 105
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=73.05 E-value=2.3 Score=22.69 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=42.1
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCC-CCCCCHHHHCCCCCCCCC
Q ss_conf 0133677304610455554310100123312576520000132100002432013322-213664663068733222
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASV-ALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i-~~~~d~~eal~~aD~V~~ 223 (306)
+=+++|++++++|.++ |+-=.+.++...|.++++++|.. .+++..+++..+... .-..+. +.+.++++|++
T Consensus 7 ~~~l~~k~VlvvGgG~-va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lvia 78 (210)
T COG1648 7 FLDLEGKKVLVVGGGS-VALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDA-EDLDDAFLVIA 78 (210)
T ss_pred EEECCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCC---CHHHHHHHHHCCCCHHHCCCCH-HHHCCCEEEEE
T ss_conf 9981997799989989-99999999974699799987874---4999999983485310022363-65368249999
No 106
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=73.02 E-value=7.7 Score=19.23 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHH-------HHHHCCCEEEEEECC
Q ss_conf 35789999898634754-3333210000123210799999-------753001011121013
Q gi|255764473|r 56 TRTRVSFEVAMKHLGGD-TIFLSGSEMQLGRAETIGDTAK-------VLSRYVDAIVMRTTN 109 (306)
Q Consensus 56 tRTR~SFe~A~~~LG~~-~~~~~~~~ss~~kgEsl~Dt~~-------~ls~~~D~iviR~~~ 109 (306)
.+|..--=...+++|.. |...-..----+.+| +.+..+ -|.+-.|++|+-..+
T Consensus 239 ~~t~~~~L~~L~~~GF~TV~~~~~~~~ln~~~e-V~~~~~~~~~~R~~L~y~IDGvV~Kvd~ 299 (706)
T TIGR00575 239 FRTQYEALAWLKKLGFPTVNPHIRLCKLNSIEE-VLEYYEEIEKKRDSLPYEIDGVVVKVDD 299 (706)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 677899999998638842012577630389889-9999999998752078730437898378
No 107
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=72.99 E-value=2.7 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=18.4
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 544379879999428883578999989863475433
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTI 74 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~ 74 (306)
..+|+||+|+.+=+=+--|- -....+.-|.+|+
T Consensus 12 l~~lk~k~iaViGYGsQG~A---hAlNLrDSG~~V~ 44 (336)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHA---HALNLRDSGVDVV 44 (336)
T ss_pred HHHHCCCEEEEECCCCHHHH---HHHHHHHCCCCEE
T ss_conf 47877997999752707689---8855374499779
No 108
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.95 E-value=3.9 Score=21.17 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC---CHHHHHHCCCCCCEECC
Q ss_conf 8999989863475433332100001232107999997530010111210132---00677630124412404
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNH---SRLLELTEYATVPVINA 127 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~---~~~~~~~~~~~vpvINa 127 (306)
.-.++-|++.||-++..+|...+--.. ....-..++..+|+||+-..+. ....+.++...||||..
T Consensus 19 ~~G~~eaA~~lGw~v~v~D~~g~~~~~---~~~i~~ai~~k~D~Iii~~~D~~~~~~~l~~A~~agIPvv~~ 87 (280)
T cd06315 19 GEGVREAAKAIGWNLRILDGRGSEAGQ---AAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 889999999759879998899999999---999999996399999999829788789999999879978962
No 109
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.76 E-value=4 Score=21.04 Aligned_cols=68 Identities=28% Similarity=0.329 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCC
Q ss_conf 7899998986347543333210000123210799999753001011121013200---6776301244124043
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINAL 128 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~ 128 (306)
-.-.+|.+++++|..++..+...+.-..-+ ..-..++..+|+|++-..+... ..+.++...||||...
T Consensus 17 ~~~G~~~~a~~~G~~~~~~~~~~d~~~q~~---~i~~~i~~~vDgIii~p~~~~~~~~~~~~a~~~gIPvv~~d 87 (277)
T cd06319 17 MGRGVKSKAKALGYDAVELSAENSAKKELE---NLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHH---HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999972998999769999999999---99999966998799647774110999999997699789986
No 110
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.57 E-value=4.3 Score=20.85 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCCCC
Q ss_conf 7899998986347543333210000123210799999753001011121013200---677630124412404333
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINALTD 130 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~~~ 130 (306)
-.-.++.+++++|.+++..+... +..+- +...-..++..+|+|++-..+... ..+.++...||||.--++
T Consensus 17 ~~~g~~~~a~~~G~~v~~~~~~~-d~~~Q--~~~i~~~i~~~vd~iii~~~d~~~~~~~~~~a~~aGIPVv~~d~~ 89 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQG-DLTKQ--IADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC-CHHHH--HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999997299999976999-99999--999999997699879981168056699999999779988997377
No 111
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=72.20 E-value=8 Score=19.11 Aligned_cols=117 Identities=15% Similarity=0.269 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHH----HHHH--CCCE-EEEEECCCCH--HHHHHCCCCCCEECCCC-----C-C-CHHHHH
Q ss_conf 333210000123210799999----7530--0101-1121013200--67763012441240433-----3-2-024678
Q gi|255764473|r 74 IFLSGSEMQLGRAETIGDTAK----VLSR--YVDA-IVMRTTNHSR--LLELTEYATVPVINALT-----D-N-THPCQI 137 (306)
Q Consensus 74 ~~~~~~~ss~~kgEsl~Dt~~----~ls~--~~D~-iviR~~~~~~--~~~~~~~~~vpvINa~~-----~-~-~HPtQa 137 (306)
+||.-.+|.+ -|.++.+.=+ .|+. -+|+ +|+-.|+.+. ..-+++.+.+|.--+.- + . =-|+|.
T Consensus 275 IYFaRPDS~i-~g~~Vy~~R~~~G~~LA~e~~v~~DiVi~VPdSg~~aA~gya~~sgipy~~glikn~YvgRTFI~p~q~ 353 (495)
T PRK07349 275 IYFARPDSRM-HGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQA 353 (495)
T ss_pred HHHCCCCCEE-CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHH
T ss_conf 2204775124-781899999999998726068888638978996299999999973997122012045446555187588
Q ss_pred HHHHHHHHH---HCCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHHCCCCC
Q ss_conf 765576642---0013367730461045---55543101001233125---765200001321
Q gi|255764473|r 138 IADIMTFEE---HRGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPIGSEPR 191 (306)
Q Consensus 138 L~D~~Ti~e---~~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~ 191 (306)
+=++-.-.+ .+..++|++|.+|-|. +++....+..+...|++ +.+++|+-..|.
T Consensus 354 ~R~~~vr~Kln~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~pC 416 (495)
T PRK07349 354 MRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPC 416 (495)
T ss_pred HHHHCCCEEEEECHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 876320132013678858985999826605574699999999976998899996899857777
No 112
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.89 E-value=2 Score=22.99 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCC--CCCCCCCCCCCCC--CCCCHHHHH-----HHHHHCCCEEEEEECCCCH---HHHHHCCC--CCCEE
Q ss_conf 999989863475--4333321000012--321079999-----9753001011121013200---67763012--44124
Q gi|255764473|r 60 VSFEVAMKHLGG--DTIFLSGSEMQLG--RAETIGDTA-----KVLSRYVDAIVMRTTNHSR---LLELTEYA--TVPVI 125 (306)
Q Consensus 60 ~SFe~A~~~LG~--~~~~~~~~~ss~~--kgEsl~Dt~-----~~ls~~~D~iviR~~~~~~---~~~~~~~~--~vpvI 125 (306)
-|+-.|.++-|. +++-++.+..++. +..-+.|.. ..+ ..+|++|+=+|.+.. +.++..+. +.-|.
T Consensus 19 gSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~-~~~DlIilatPv~~~~~vl~~l~~~l~~~~ivT 97 (307)
T PRK07502 19 SSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAV-KGADLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999999854998579998499999999998699751127776640-458979991789999999999985558996899
Q ss_pred CCCCCCCHHHHH
Q ss_conf 043332024678
Q gi|255764473|r 126 NALTDNTHPCQI 137 (306)
Q Consensus 126 Na~~~~~HPtQa 137 (306)
-.|+-....++.
T Consensus 98 DvgSvK~~I~~~ 109 (307)
T PRK07502 98 DVGSVKASVIAA 109 (307)
T ss_pred ECCCCHHHHHHH
T ss_conf 663211899999
No 113
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=71.84 E-value=2.5 Score=22.42 Aligned_cols=36 Identities=17% Similarity=0.012 Sum_probs=16.7
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 336773046104555543101001233125765200
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
+++|++++++|-.+.|..--..++++-|.++.+++.
T Consensus 25 dl~g~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R 60 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 867988999858857899999999983997999958
No 114
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.20 E-value=5.1 Score=20.41 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECCCC
Q ss_conf 89999898634754333321000012321079999975300101112101320067---763012441240433
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINALT 129 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa~~ 129 (306)
.-.+|.+++++|.+++..+.... ..+- ++..-..++..+|+|++-..+...+. .-+....+|||...+
T Consensus 19 ~~g~e~~A~~~G~~~~v~~~~~d-~~~q--~~~i~~~i~~~vd~Iii~p~d~~~~~~~i~~a~~agIpVv~~d~ 89 (275)
T cd06317 19 NKAFQAAAEEDGVEVIVLDANGD-VARQ--AAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNS 89 (275)
T ss_pred HHHHHHHHHHCCCEEEEECCCCC-HHHH--HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999976998999779999-9999--99999999759999999678712457999999986994999768
No 115
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=70.78 E-value=2.8 Score=22.13 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=52.2
Q ss_pred CCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHC-CCEEEEEECC----CCHHHHHHCCCCCCEECCCC--C-CCHH
Q ss_conf 75433332100-------0012321079999975300-1011121013----20067763012441240433--3-2024
Q gi|255764473|r 70 GGDTIFLSGSE-------MQLGRAETIGDTAKVLSRY-VDAIVMRTTN----HSRLLELTEYATVPVINALT--D-NTHP 134 (306)
Q Consensus 70 G~~~~~~~~~~-------ss~~kgEsl~Dt~~~ls~~-~D~iviR~~~----~~~~~~~~~~~~vpvINa~~--~-~~HP 134 (306)
+-+++.+++++ +++.+||.. ++.++.+ +|+.++=--+ ...+....+.++.|+++|=- . ..-|
T Consensus 75 ~~n~llldaGD~~qGt~~s~l~~g~p~---i~~mN~lgyDa~tlGNHEFD~G~~~l~~~~~~a~fP~LsANi~~~~~g~~ 151 (551)
T PRK09558 75 GGSVLLLSGGDINTGVPESDLQDAEPD---FRGMNLIGYDAMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGER 151 (551)
T ss_pred CCCEEEEECCCCCCCCCCCHHCCCCHH---HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 998799958855567746042288079---99986189888977754455787899999852799779866567788981
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 678765576642001336773046104
Q gi|255764473|r 135 CQIIADIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 135 tQaL~D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
+..-|+|.+ ..|.||+++|=
T Consensus 152 ---~~~py~I~e----~~G~kVGiIGl 171 (551)
T PRK09558 152 ---LFKPYKIFD----VQGLKIAVIGL 171 (551)
T ss_pred ---CCCCEEEEE----ECCEEEEEEEC
T ss_conf ---557769999----79969999971
No 116
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=70.42 E-value=2 Score=23.03 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=38.9
Q ss_pred CEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 3046104555543101001233125765200001321000024320133222136646630687332221
Q gi|255764473|r 155 LFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 155 ~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~ 224 (306)
||+++|- +|+..+++..+.+-|.++.+++... ++......+..+..+ ...+..++++++|+|+.-
T Consensus 1 KIg~IG~-G~mg~ai~~~l~~~g~~~~~~~~r~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~DvIila 65 (93)
T pfam03807 1 KIGIIGA-GNMGEALARGLAAAGHEVIIANSRN---PEKAAALAEELGVGA-TAVSNEEAAEEADVVILA 65 (93)
T ss_pred CEEEECC-HHHHHHHHHHHHHCCCCCEEEECCC---HHHHHHHHHHHCCCC-CCCCHHHHHHCCCEEEEE
T ss_conf 9899970-0999999999997799612786487---899999999819976-458999997449989999
No 117
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=70.29 E-value=3 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=10.2
Q ss_pred CCCCCCEEEEEECCCC
Q ss_conf 4437987999942888
Q gi|255764473|r 40 KPLSGKVLAMIFEKPS 55 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~S 55 (306)
.+|++|+|+.+=+=+-
T Consensus 12 ~~lk~k~iaVIGYGsQ 27 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQ 27 (335)
T ss_pred HHHCCCEEEEEEECCH
T ss_conf 8887997999756707
No 118
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.17 E-value=3.4 Score=21.52 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHCCHHHHHHHHHHHH
Q ss_conf 44589999999999999
Q gi|255764473|r 11 LSNISSSNLSCIIEVAK 27 (306)
Q Consensus 11 ~~dl~~~~i~~ll~~A~ 27 (306)
+.|.+.+.+....+...
T Consensus 30 l~D~~~e~l~~~~~~i~ 46 (289)
T PRK09260 30 LVDISQEQLASAQQEIE 46 (289)
T ss_pred EEECCHHHHHHHHHHHH
T ss_conf 99799899999999999
No 119
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=69.61 E-value=5.9 Score=19.99 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=60.9
Q ss_pred HHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCC-EEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 420013367730461045555431010012331-2576520000132100002432013322213664663068733222
Q gi|255764473|r 145 EEHRGSVKGKLFSWSGDGNNILHSLIEGAARFN-YLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 145 ~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g-~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
++.+|+++++++.++|-+- +...-+..+..-| ..++++.- .+. ...+.+++.|..+...+++.+.+.++|+|++
T Consensus 170 ~~~~~~L~~~~vlvIGAGe-m~~lva~~L~~~g~~~i~IaNR-T~e---rA~~La~~~~~~~~~l~el~~~l~~~DvVis 244 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGE-MGELVAKHLAEKGVKKITIANR-TLE---RAEELAKKLGAEAVALEELLEALAEADVVIS 244 (414)
T ss_pred HHHHCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECC-CHH---HHHHHHHHHCCEEECHHHHHHHHHHCCEEEE
T ss_conf 9983654467699986518-9999999998589877999758-789---9999999838702218778876520799999
Q ss_pred CCEEECCCCCHHHHHHCCCCCCCCHHHHHCC---CCC-CEEECCCCCCCCCC
Q ss_conf 1000000220133310011123368899628---987-29925999874873
Q gi|255764473|r 224 DTWISMNQEFKAREEHVFQPFQVNLSLMSMA---HPD-ALFMHCLPAHRGEE 271 (306)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a---~~~-~~vmHplP~~rg~E 271 (306)
-+ . -..|.++.+.++.+ ++. .+|==-.| |++|
T Consensus 245 sT--------s------a~~~ii~~~~ve~a~~~r~~~livDiavP--Rdie 280 (414)
T COG0373 245 ST--------S------APHPIITREMVERALKIRKRLLIVDIAVP--RDVE 280 (414)
T ss_pred EC--------C------CCCCCCCHHHHHHHHHCCCCEEEEEECCC--CCCC
T ss_conf 06--------9------98554078889988741167599982699--9987
No 120
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.38 E-value=3.2 Score=21.71 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=7.3
Q ss_pred CCEEEEEECCCCHHHHHHC
Q ss_conf 1011121013200677630
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTE 118 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~ 118 (306)
.|+|..=..+.-.+.++++
T Consensus 112 ~~~IlaSNTSsl~it~la~ 130 (288)
T PRK08293 112 EKTIFATNSSTLLPSQFAD 130 (288)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 7669986687676579988
No 121
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=69.34 E-value=7.1 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=7.1
Q ss_pred HHCCCCCCCCCCC
Q ss_conf 6306873322210
Q gi|255764473|r 213 QAVKGAHCVFTDT 225 (306)
Q Consensus 213 eal~~aD~V~~~~ 225 (306)
++|+.||+|..|+
T Consensus 22 r~L~~ADVvlYD~ 34 (242)
T TIGR01469 22 RLLQEADVVLYDR 34 (242)
T ss_pred HHHHHCCEEEEEC
T ss_conf 9986299789842
No 122
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=69.24 E-value=9.2 Score=18.69 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=64.2
Q ss_pred CEEEEEECCCC---CH-HHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCC
Q ss_conf 87999942888---35-78999989863475433332100-001232107999997530010111210132006776301
Q gi|255764473|r 45 KVLAMIFEKPS---TR-TRVSFEVAMKHLGGDTIFLSGSE-MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEY 119 (306)
Q Consensus 45 k~i~~lF~e~S---tR-TR~SFe~A~~~LG~~~~~~~~~~-ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~ 119 (306)
-.||.+|-.-+ +. -+--.+.++++||.++..+++.. -...+- +...-..++..+|+|++=..+...+......
T Consensus 46 ~ki~~~~p~lkd~yW~~v~~G~~~~Ak~lGv~l~v~~a~~~~d~~~Q--~~qie~~i~~~vDAIil~~vd~~a~~~~~~~ 123 (340)
T PRK10936 46 WKLCALYPHLKDSYWLSVNYGLVQEAKRLGVDLKVLEAGGYYNLATQ--QQQLEQCVAWGADAILLGAVTPDGPDLQLQA 123 (340)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
T ss_conf 17999806888869999999999999980986999858998899999--9999999975999999867883411568985
Q ss_pred CCCCEECCCCCCCHH---HHHHHHHHHHHHH--------CCC-CCCCCEEEE-CC
Q ss_conf 244124043332024---6787655766420--------013-367730461-04
Q gi|255764473|r 120 ATVPVINALTDNTHP---CQIIADIMTFEEH--------RGS-VKGKLFSWS-GD 161 (306)
Q Consensus 120 ~~vpvINa~~~~~HP---tQaL~D~~Ti~e~--------~g~-l~~~~i~~v-Gd 161 (306)
.++|||..-++...| +..-.|-+.+-.. .+. =+..+|+|+ |.
T Consensus 124 agIPVI~~dn~i~~~~~~~~vg~dn~~~G~~ag~~la~~~~~~~~~~~Va~l~G~ 178 (340)
T PRK10936 124 ANIPVIALVNGIDSPQVTTRVGVSWYQMGYQAGRYLAQWHPKGSGKLNVALLPGP 178 (340)
T ss_pred CCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 8997899966777776444884567999999999999973157984399995287
No 123
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=68.02 E-value=9.7 Score=18.55 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCCCCCHHHHH----HHHHH--CCCE-EEEEECCCCH--HHHHHCCCCCCEECCCC-----C-C-CHHHHH
Q ss_conf 33321000012321079999----97530--0101-1121013200--67763012441240433-----3-2-024678
Q gi|255764473|r 74 IFLSGSEMQLGRAETIGDTA----KVLSR--YVDA-IVMRTTNHSR--LLELTEYATVPVINALT-----D-N-THPCQI 137 (306)
Q Consensus 74 ~~~~~~~ss~~kgEsl~Dt~----~~ls~--~~D~-iviR~~~~~~--~~~~~~~~~vpvINa~~-----~-~-~HPtQa 137 (306)
+||.-.+|-+ -|.++.+.= +.|+. -+|+ +|+-.|+.+. ..-+++.+.+|.-.+.- + . =-|+|.
T Consensus 254 IYFaRpdS~i-~g~~Vy~~R~~~G~~LA~e~~~~~DiVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~ 332 (480)
T PRK09123 254 VYFARPDSVV-GGRSVYEVRKNIGRELARESPVDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQ 332 (480)
T ss_pred EECCCCCCEE-CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHCEEECCCCCCCCCCCCHH
T ss_conf 5215798103-694799999999999960079875527756676446789888763996112253124215774388787
Q ss_pred HHHHHHHHH---HCCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHHCCCCC
Q ss_conf 765576642---0013367730461045---55543101001233125---765200001321
Q gi|255764473|r 138 IADIMTFEE---HRGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPIGSEPR 191 (306)
Q Consensus 138 L~D~~Ti~e---~~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~ 191 (306)
+=+...-.+ .+..++|++|.+|-|. +++....+..+...|++ +.+++|+-..|.
T Consensus 333 ~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc 395 (480)
T PRK09123 333 IRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPTTHPC 395 (480)
T ss_pred HHHHCCEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 776370775640333458982999806615367699999999977998899996899857876
No 124
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=67.54 E-value=7.2 Score=19.40 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCC-CCCCCCCCCHHHHCCCCCCC
Q ss_conf 64200133677304610455554310100123312-57652000013210000243201-33222136646630687332
Q gi|255764473|r 144 FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQ-GASVALFHDAVQAVKGAHCV 221 (306)
Q Consensus 144 i~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~-g~~i~~~~d~~eal~~aD~V 221 (306)
..+.+++++++++.++|-+. +..-.+.-+...|. ++.++.... ......+... |.......++.+.+..+|+|
T Consensus 172 a~~~~~~l~~~~vlvvGaGe-m~~l~~k~L~~~g~~~i~v~nRt~----~ra~~la~~~~~~~~~~~~~l~~~l~~aDiv 246 (414)
T PRK13940 172 AKRQLDNISSKNVLIIGAGQ-TGELLFRHVTALAPKQIMLANRTI----EKAQKITSAFRNASAHYLSELPQLIKKADII 246 (414)
T ss_pred HHHHCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE
T ss_conf 99862871228389966864-789999999976998799945756----7799999970888501699999998638879
Q ss_pred CCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 22100000022013331001112336889962898729925999874873
Q gi|255764473|r 222 FTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEE 271 (306)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~E 271 (306)
++-+ + -..|-++.+.++. +|-.+|=-..| |++|
T Consensus 247 isaT----~----------a~~~ii~~~~~~~-~p~~~iDLavP--Rdid 279 (414)
T PRK13940 247 IAAV----N----------VLEYIVTCKYVGD-KPRVFIDISIP--QALD 279 (414)
T ss_pred EEEC----C----------CCHHHCCHHHHCC-CCEEEEEECCC--CCCC
T ss_conf 9816----9----------8244404866457-97589984588--8888
No 125
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=67.08 E-value=8.1 Score=19.08 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHH--------HCC-CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCC--CCCCHHHHH
Q ss_conf 2024678765576642--------001-33677304610455554310100123312576520000132--100002432
Q gi|255764473|r 131 NTHPCQIIADIMTFEE--------HRG-SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEP--RNEYLNWAR 199 (306)
Q Consensus 131 ~~HPtQaL~D~~Ti~e--------~~g-~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~--~~~~~~~~~ 199 (306)
..-||-.++=+--+.. ..| +++|++++++|-.+-|..-+..++..-|+.++.+.-..... .........
T Consensus 31 ~~iPCTP~gv~~LL~~~~i~~~~~~yg~~l~Gk~vvVIGRS~iVGkPla~LL~~~~ATVt~~d~~~~~~~~~~~~~~~~~ 110 (197)
T cd01079 31 SILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEK 110 (197)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 78778699999999971855433235778899989998987315488999997389967750344214640466522124
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 0133222136646630687332221
Q gi|255764473|r 200 NQGASVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 200 ~~g~~i~~~~d~~eal~~aD~V~~~ 224 (306)
.. --....+..+.++.||+|.+-
T Consensus 111 ~~--~~~~~~~~~~~~~~aDIvI~a 133 (197)
T cd01079 111 HH--VTDEEAMTLDCLSQSDVVITG 133 (197)
T ss_pred EE--ECCCCHHHHHHCCCCCEEEEC
T ss_conf 56--414210056542347999988
No 126
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=66.84 E-value=3.9 Score=21.15 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCEEECC
Q ss_conf 222136646630687332221000000
Q gi|255764473|r 204 SVALFHDAVQAVKGAHCVFTDTWISMN 230 (306)
Q Consensus 204 ~i~~~~d~~eal~~aD~V~~~~~~~~~ 230 (306)
.+.++.|-.|++++||+|+| |...+
T Consensus 128 glkvt~dD~eAV~dAD~iit--WlPkG 152 (345)
T PRK00961 128 GLKVTTDDREAVKDADIVIT--WLPKG 152 (345)
T ss_pred CCEEECCCHHHHCCCCEEEE--ECCCC
T ss_conf 81553370767447777999--54688
No 127
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=66.82 E-value=3.5 Score=21.47 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=45.3
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCC-CCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 0133677304610455554310100123-312-57652000013210000243201332221366466306873322210
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAAR-FNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~-~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
...-+..+++++|-+. .+++.++++.. ++. ++.+..+.. .-...+....+..+..+....+++++++++|+|.+-.
T Consensus 124 Lar~da~~l~iiGaG~-QA~~~l~al~~v~~i~~v~v~~r~~-~~~~~f~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT 201 (312)
T pfam02423 124 LAPPDASTLAIIGAGA-QAEFQAEALSAVLPIEEIRIYDRDP-EAAEKFARNLQGKGFEIVACTSAEEAVEGADIVVTVT 201 (312)
T ss_pred HCCCCCCEEEEECCCH-HHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHHHHHCCCCEEEECCHHHHHHCCCEEEEEE
T ss_conf 4169975799964625-3899999999619976899996898-9999999999834996599489999971499899973
Q ss_pred E
Q ss_conf 0
Q gi|255764473|r 226 W 226 (306)
Q Consensus 226 ~ 226 (306)
.
T Consensus 202 ~ 202 (312)
T pfam02423 202 P 202 (312)
T ss_pred C
T ss_conf 5
No 128
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.77 E-value=10 Score=18.38 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHH---HHCCCCCCEECCCC
Q ss_conf 7899998986347543333210-000123210799999753001011121013200677---63012441240433
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGS-EMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLE---LTEYATVPVINALT 129 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~-~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~---~~~~~~vpvINa~~ 129 (306)
-+-.+|.||+++|.+++...+. ..+..+- ++..-..++..+|+|++-..+...+.. -+....+|||.-.+
T Consensus 17 v~~G~e~aA~~~G~~v~~~~~~~~~d~~~q--~~~i~~~i~~~vDgIii~p~~~~~~~~~l~~a~~~gIPvV~~d~ 90 (273)
T cd06310 17 VKAGAEAAAKELGVKVTFQGPASETDVAGQ--VNLLENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLIDS 90 (273)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999980998999728997899999--99999999749999999168714479999999984998589803
No 129
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=66.63 E-value=4.1 Score=20.99 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCC------CCCCCHHHHCCCCCCCCC
Q ss_conf 33677304610455554310100123312576520000132100002432013322------213664663068733222
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASV------ALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i------~~~~d~~eal~~aD~V~~ 223 (306)
.....+++++|-+. +.-.=+..+..+|..+.+..-.. ..++..+..+.+. .....+.+.++++|+|+.
T Consensus 17 gv~pa~vvViG~Gv-~G~~A~~~A~~lGa~V~v~D~~~-----~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~aDvvIg 90 (150)
T pfam01262 17 GVPPAKVVVIGGGV-VGLGAAATAKGLGAPVTILDVRP-----ERLEQLDSLFAEFVETDIFSNCEYLAEAIAEADLVIG 90 (150)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEE
T ss_conf 97677799989878-99999999986799899972999-----9999999864762001665379999999743879997
Q ss_pred CCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 1000000220133310011123368899628987299259998748
Q gi|255764473|r 224 DTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAHRG 269 (306)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg 269 (306)
.....-. ..+--|+++.++.+||..++- ..-+..|
T Consensus 91 avl~pg~----------~aP~lIt~~mv~~MkpGsVIV-DvaiDqG 125 (150)
T pfam01262 91 TVLIPGA----------RAPKLVTREMVKTMKPGSVIV-DVAIDQG 125 (150)
T ss_pred EEECCCC----------CCCCEECHHHHHHHCCCCEEE-EEECCCC
T ss_conf 2031788----------699220799998447993999-9620489
No 130
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=66.46 E-value=10 Score=18.41 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHH--HCCCCCCEECCCCC---C
Q ss_conf 78999989863475433332100-001232107999997530010111210132006776--30124412404333---2
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSE-MQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLEL--TEYATVPVINALTD---N 131 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~-ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~--~~~~~vpvINa~~~---~ 131 (306)
-+-..+.|++++|..+..+++.. ....+ =+...-..+...+|+|++-..+...+... +....+|||..-++ .
T Consensus 17 ~~~Ga~~aA~e~G~~v~~~~~~~~~d~~~--Qi~~ie~~i~~gvDaIii~p~d~~al~~~~~a~~agIPVV~~d~~i~~~ 94 (268)
T cd06306 17 VNYGMVEEAKRLGVSLKLLEAGGYPNLAK--QIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALVNDINSP 94 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCHHH--HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 99999999999699799995899999999--9999999998399999986798677789999998698299994577875
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 0246787655766
Q gi|255764473|r 132 THPCQIIADIMTF 144 (306)
Q Consensus 132 ~HPtQaL~D~~Ti 144 (306)
...++.-.|-+..
T Consensus 95 ~~~~~v~~dn~~~ 107 (268)
T cd06306 95 DITAKVGVSWYEM 107 (268)
T ss_pred CCCEEEECCHHHH
T ss_conf 5403675172799
No 131
>PRK08655 prephenate dehydrogenase; Provisional
Probab=65.45 E-value=4.8 Score=20.59 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=42.9
Q ss_pred CCCEEEEEECCCCHHH---HHHCCCCC--CEECCCCCCCHHHHHHHHH-------HHHHHHCCC----CCCCCEEEECCC
Q ss_conf 0101112101320067---76301244--1240433320246787655-------766420013----367730461045
Q gi|255764473|r 99 YVDAIVMRTTNHSRLL---ELTEYATV--PVINALTDNTHPCQIIADI-------MTFEEHRGS----VKGKLFSWSGDG 162 (306)
Q Consensus 99 ~~D~iviR~~~~~~~~---~~~~~~~v--pvINa~~~~~HPtQaL~D~-------~Ti~e~~g~----l~~~~i~~vGd~ 162 (306)
.+|++++=.|-+.+.. +++.+..- -+.--.+=.+-|.++++.. .-++--||. +.|..|++|+-.
T Consensus 58 ~advVIvsVPI~~T~~VI~~laP~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP~v~sl~gQvVVvcP~~ 137 (441)
T PRK08655 58 DGDIVIVSVPINVTEDVIREVAPHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGPRTPSLRGQVVILTPTE 137 (441)
T ss_pred CCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 49999998488999999999742489996999831041779999997565788774548887999866578889996389
Q ss_pred C--CCCCCHH-HCCCCCCEEEEEECHHCCC
Q ss_conf 5--5543101-0012331257652000013
Q gi|255764473|r 163 N--NILHSLI-EGAARFNYLLNIATPIGSE 189 (306)
Q Consensus 163 ~--~v~hS~i-~~~~~~g~~v~~~~P~~~~ 189 (306)
+ +-..+|+ ..+...|+.+..++|+...
T Consensus 138 ~~~~~~~~~l~~~l~~~Ga~v~~~tpeEHD 167 (441)
T PRK08655 138 KRSNPWFPKVRNFLEEEGARVIITTPEEHD 167 (441)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 877177999999999779889994889986
No 132
>PRK09701 D-allose transporter subunit; Provisional
Probab=65.16 E-value=11 Score=18.17 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCCCCCC-CCCHHHHHHHHHHCCCEEEEEECCCCHH---HHHHCCCCCCEECCC
Q ss_conf 578999989863475433332-10000123-2107999997530010111210132006---776301244124043
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLS-GSEMQLGR-AETIGDTAKVLSRYVDAIVMRTTNHSRL---LELTEYATVPVINAL 128 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~-~~~ss~~k-gEsl~Dt~~~ls~~~D~iviR~~~~~~~---~~~~~~~~vpvINa~ 128 (306)
.-+-.++.|++.+|.++..+. +.+....+ -+-++| .+...+|+|++-..+...+ .+-+.-..||||+--
T Consensus 41 ~~~~Ga~~aAk~~G~~v~v~~~~~~~D~~~Qi~~Ie~---~I~~gvdaIii~p~d~~a~~~~i~~A~~aGIpVV~~D 114 (311)
T PRK09701 41 DMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFED---LSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLD 114 (311)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHH---HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 9999999999986997999927987899999999999---9975999999918987788999999997799189636
No 133
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=65.11 E-value=7.9 Score=19.13 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCC
Q ss_conf 899998986347543333210000123210799999753001011121013200---6776301244124043
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINAL 128 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~ 128 (306)
--.+|.+++++|.+++..+.... ..+- +...-..++..+|+|++-..+... ....++...+|||.-.
T Consensus 18 ~~gie~~a~~~G~~l~~~~~~~d-~~~q--~~~i~~li~~~vDgIii~p~~~~~~~~~l~~a~~agIPvV~~d 87 (273)
T cd06309 18 TKSIKDAAEKRGFDLKFADAQQK-QENQ--ISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHHHHHHHHCCCEEEEECCCCC-HHHH--HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999976998999769999-9999--9999999975999999805765435899999997499889982
No 134
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=63.61 E-value=5.1 Score=20.39 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCCCEEEECCCCCCCCCHHHCCCC-CCE---EEEEECHHCCCCCCCCHHHHH-CCCCCCCCCCCHHHHCCCCCCCCCCC-
Q ss_conf 677304610455554310100123-312---576520000132100002432-01332221366466306873322210-
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGAAR-FNY---LLNIATPIGSEPRNEYLNWAR-NQGASVALFHDAVQAVKGAHCVFTDT- 225 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~~~-~g~---~v~~~~P~~~~~~~~~~~~~~-~~g~~i~~~~d~~eal~~aD~V~~~~- 225 (306)
+...+.++|.++ =+.-.++++++ |.. +++-..++ ..++++..+. ..+.-+..+.++.|.+.+.|++.|..
T Consensus 128 dssv~G~iGaG~-QA~tQL~Al~rVfd~eeV~~y~rt~~---~~~kF~~~~skd~~~~~~a~~~p~E~v~~cDilVTtTP 203 (327)
T TIGR02371 128 DSSVLGLIGAGR-QAYTQLEALSRVFDLEEVKVYSRTKE---AAEKFVKRASKDYEVPVRAATDPAEKVEDCDILVTTTP 203 (327)
T ss_pred CCCEEEEEECCH-HHHHHHHHHHHHCCCCEEEEEECCHH---HHHHHHHHHHCCCCCCEEECCCCHHHHCCCCEEEEECC
T ss_conf 663355763685-79999999876255450699861768---89999987520246512421267477707867998568
Q ss_pred ---------EEECCCCCHHHHHHCCCCCCCCHHHHHCCC---CCCE-EECCCCCCC
Q ss_conf ---------000002201333100111233688996289---8729-925999874
Q gi|255764473|r 226 ---------WISMNQEFKAREEHVFQPFQVNLSLMSMAH---PDAL-FMHCLPAHR 268 (306)
Q Consensus 226 ---------~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~---~~~~-vmHplP~~r 268 (306)
|.+.|.--..---+.--+=-+|-++|+++| ++.. =.|-|=+|.
T Consensus 204 sRkPvVkA~WV~eGTHInAiGADapGKqELDpeiLk~aki~vDdleQA~HsGEiNV 259 (327)
T TIGR02371 204 SRKPVVKADWVEEGTHINAIGADAPGKQELDPEILKKAKIVVDDLEQAKHSGEINV 259 (327)
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHCCCEEEECHHHCCCCCEEEE
T ss_conf 98960754225988825510578888310036876327068851332001764710
No 135
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=62.60 E-value=12 Score=17.87 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEEC
Q ss_conf 202467876557664200133677304610455554310100123312576520
Q gi|255764473|r 131 NTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIAT 184 (306)
Q Consensus 131 ~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~ 184 (306)
..-|--++.=+.-|. .+|++.|++|..+||.- +-|+..++..++.++.++-
T Consensus 24 ~~T~ET~v~Ra~l~~-~rgdL~Gk~iL~vGDDD--LtSlA~al~~~p~~I~VvD 74 (243)
T pfam01861 24 FVTPETTVARVALMY-SRGDLEGKEILVLGDDD--LTSLAAALTGLPKRIAVVD 74 (243)
T ss_pred CCCHHHHHHHHHHHH-HCCCCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEE
T ss_conf 316288999999998-73885798799972861--8789999648985489996
No 136
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=62.43 E-value=12 Score=17.85 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHH----HHHHC--CCE-EEEEECCCCH--HHHHHCCCCCCEECCCC-----C-C-CHHHHH
Q ss_conf 333210000123210799999----75300--101-1121013200--67763012441240433-----3-2-024678
Q gi|255764473|r 74 IFLSGSEMQLGRAETIGDTAK----VLSRY--VDA-IVMRTTNHSR--LLELTEYATVPVINALT-----D-N-THPCQI 137 (306)
Q Consensus 74 ~~~~~~~ss~~kgEsl~Dt~~----~ls~~--~D~-iviR~~~~~~--~~~~~~~~~vpvINa~~-----~-~-~HPtQa 137 (306)
+||.-.+|.+ .|.++.+.=+ .|+.- ++. +|+=.|+.+. ..-+++.+.+|.-.+.- + . -.|+|.
T Consensus 243 iYfarpdS~~-~g~~Vy~~R~~~G~~La~~~~v~~D~Vi~VPdsg~~~a~gya~~~~ip~~~~likn~y~gRtFI~p~q~ 321 (445)
T PRK08525 243 IYFARPDSIV-EGKNVYEVRKKMGEELAKKFAVKADFVVPVPDSGVSAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQE 321 (445)
T ss_pred EECCCCCCEE-CCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHH
T ss_conf 1125786103-780899999999999862568678817865898578899999982994555312220026301488544
Q ss_pred HHHHHHHHHHC----CCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHHCCCCC
Q ss_conf 76557664200----13367730461045---55543101001233125---765200001321
Q gi|255764473|r 138 IADIMTFEEHR----GSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPIGSEPR 191 (306)
Q Consensus 138 L~D~~Ti~e~~----g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~ 191 (306)
+-+.-. +.++ ..++|++|.+|-|. +++....+..+...|++ +.+++|+--.|.
T Consensus 322 ~R~~~v-~~Klnp~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC 384 (445)
T PRK08525 322 MRNLKV-KLKLNPMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIKFPC 384 (445)
T ss_pred HHHHHH-CCCEEEHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 556532-323002345217986999817615577899999999977998899996899968886
No 137
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.97 E-value=8.9 Score=18.79 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=9.1
Q ss_pred CCCCCHHHHCCCCCCCCCCC
Q ss_conf 21366466306873322210
Q gi|255764473|r 206 ALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 206 ~~~~d~~eal~~aD~V~~~~ 225 (306)
.++++++|++.+.|+|+.+.
T Consensus 61 ~i~~tL~eAl~d~~~v~aTt 80 (242)
T COG0565 61 KIVDTLEEALADCDLVVATT 80 (242)
T ss_pred EEECCHHHHHCCCCEEEEEC
T ss_conf 66467999960788799805
No 138
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=61.61 E-value=4.6 Score=20.67 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCH-HHHHHHHHHHHHHHCC-C-CCCCCEEEECCC---CCCCCC-HHHCCCCCC--EEEEEECH----HCCCCCCCCHHH
Q ss_conf 202-4678765576642001-3-367730461045---555431-010012331--25765200----001321000024
Q gi|255764473|r 131 NTH-PCQIIADIMTFEEHRG-S-VKGKLFSWSGDG---NNILHS-LIEGAARFN--YLLNIATP----IGSEPRNEYLNW 197 (306)
Q Consensus 131 ~~H-PtQaL~D~~Ti~e~~g-~-l~~~~i~~vGd~---~~v~hS-~i~~~~~~g--~~v~~~~P----~~~~~~~~~~~~ 197 (306)
+.| |-+-|.||.---+... - -++-+|++.||+ +-+.=+ +++.+..|| ..+.+..| ++|.|.++....
T Consensus 30 ~l~~~p~~l~dm~kAv~ri~~A~~~~eki~i~GDyDvDGiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~~ 109 (705)
T TIGR00644 30 HLHDPPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALRE 109 (705)
T ss_pred CCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 88787021143689999999999728938999617522689999999999950997324666266357777889899999
Q ss_pred HHCCCCCCCCCCCH-HHH--------CCCCCCCCCCCE
Q ss_conf 32013322213664-663--------068733222100
Q gi|255764473|r 198 ARNQGASVALFHDA-VQA--------VKGAHCVFTDTW 226 (306)
Q Consensus 198 ~~~~g~~i~~~~d~-~ea--------l~~aD~V~~~~~ 226 (306)
+...|.++.++=|- ..+ -.+.|||.||=-
T Consensus 110 ~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dVIVtDHH 147 (705)
T TIGR00644 110 LKENGVSLIITVDNGISAHEEIEYAKELGIDVIVTDHH 147 (705)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 98669839998268742699999998669819997256
No 139
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=61.31 E-value=12 Score=18.07 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHH---HHHCCCCCCEECCCCC
Q ss_conf 5789999898634754333321000012321079999975300101112101320067---7630124412404333
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLL---ELTEYATVPVINALTD 130 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~---~~~~~~~vpvINa~~~ 130 (306)
.-+-.++.|++.+|.++..+.+.+.+..+- ++..-..++..+|+|++-..+...+. +-+. ..+|||.-.++
T Consensus 15 ~v~~G~~~aA~e~Gv~v~~~~~~~~d~~~Q--~~~i~~~i~~~vDaIii~p~d~~~~~~~~~~a~-agIpVv~~d~~ 88 (271)
T cd06314 15 IAEAGVKAAGKELGVDVEFVVPQQGTVNAQ--LRMLEDLIAEGVDGIAISPIDPKAVIPALNKAA-AGIKLITTDSD 88 (271)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCHHHH--HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 999999999998599899996899999999--999999997599999992687455699999996-59988998078
No 140
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=61.09 E-value=6.3 Score=19.78 Aligned_cols=114 Identities=23% Similarity=0.150 Sum_probs=61.5
Q ss_pred HHHCCC--CCCCCEEEECCCCCCCCCHHHCCCCCC-EEEEEECHHCCCCCCCCHHHHHCCCC-C-CCCC----CCHHHHC
Q ss_conf 420013--367730461045555431010012331-25765200001321000024320133-2-2213----6646630
Q gi|255764473|r 145 EEHRGS--VKGKLFSWSGDGNNILHSLIEGAARFN-YLLNIATPIGSEPRNEYLNWARNQGA-S-VALF----HDAVQAV 215 (306)
Q Consensus 145 ~e~~g~--l~~~~i~~vGd~~~v~hS~i~~~~~~g-~~v~~~~P~~~~~~~~~~~~~~~~g~-~-i~~~----~d~~eal 215 (306)
++.||+ |+++|+.++|=+. ++.=.+..+...| .++.++.- .+.= ..+.++.-+. . +... +++.+++
T Consensus 175 ~~ifG~erL~~~~~LliGAGe-Mg~Lva~~L~~~~v~~~~i~NR-t~~r---A~~LA~e~~~P~~~~f~~La~~~L~~~L 249 (436)
T TIGR01035 175 EKIFGSERLKGKKVLLIGAGE-MGELVAKHLREKGVGKVLIANR-TYER---AEKLAKELGGPEAVKFEALALEKLEEAL 249 (436)
T ss_pred HHHHCCCCCCCCEEEEEECCH-HHHHHHHHHHHCCCCEEEEECC-CHHH---HHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 987256211664189982745-7999999996489528988556-7789---9999987078664544455489999997
Q ss_pred CCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCC----------CCCCEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 687332221000000220133310011123368899628----------987299259998748735767967997
Q gi|255764473|r 216 KGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMA----------HPDALFMHCLPAHRGEEVINEVLDGPQ 281 (306)
Q Consensus 216 ~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a----------~~~~~vmHplP~~rg~EI~~~v~d~~~ 281 (306)
+.+|+|++=+ +. ..|-|+.+.++.+ .|-.+|==-.| |+ |+.+|-+=|.
T Consensus 250 ~~~DivissT----gA----------~~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvP--Rd--vd~~v~~L~~ 307 (436)
T TIGR01035 250 AEADIVISST----GA----------PEPIVSKEDVERALKERRRDEAARPLFIVDIAVP--RD--VDPEVAKLEG 307 (436)
T ss_pred HHCCEEEEEC----CC----------CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCC--CC--CCHHHHCCCC
T ss_conf 4288999855----76----------5310020348999997222001588699975889--98--6378622296
No 141
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.91 E-value=11 Score=18.10 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCCC
Q ss_conf 89999898634754-----3333210000123210799999753001011121013200---67763012441240433
Q gi|255764473|r 59 RVSFEVAMKHLGGD-----TIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINALT 129 (306)
Q Consensus 59 R~SFe~A~~~LG~~-----~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~~ 129 (306)
+-..+.+++++|.. ++.+++....-..-+-++ ..++..+|+|++=..+... ..+-++...||||.--.
T Consensus 18 ~~~~~~~a~~~g~~~~~v~~~~~da~~D~~~Q~~~ie---~lI~qgvDaIiv~p~d~~a~~~~v~~a~~aGIpVV~~D~ 93 (274)
T cd06311 18 VWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQD---LLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDR 93 (274)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH---HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999998276468927999718999999999999---999749999999579778889999999986997999788
No 142
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=60.68 E-value=13 Score=17.65 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHH--CCCE-EEEEECCCCH--HHHHHCCCCC
Q ss_conf 288835789999898634754333321000012321079999----97530--0101-1121013200--6776301244
Q gi|255764473|r 52 EKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTA----KVLSR--YVDA-IVMRTTNHSR--LLELTEYATV 122 (306)
Q Consensus 52 ~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~----~~ls~--~~D~-iviR~~~~~~--~~~~~~~~~v 122 (306)
.+++....++||- +||.-.+|.+ .|.++.+.= +.|+. -+|+ +|+=.|+.+. ..-+++.+.+
T Consensus 240 ~~~~~~~~C~FEy---------IYFaRpdS~i-~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aA~Gya~~~gi 309 (484)
T PRK07272 240 TDETQLAICSMEY---------IYFARPDSTI-HGVNVHTARKRMGKRLAQEFPVDADIVIGVPNSSLSAASGYAEESGL 309 (484)
T ss_pred CCCCCCCCCEEEE---------EECCCCCCEE-CCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 7999887453442---------1116798138-78689999999999998357877872500788538999999987299
Q ss_pred CEECCCC-----C-C-CHHHHHHHHHHHHHH---HCCCCCCCCEEEECC---CCCCCCCHHHCCCCCCEE---EEEECHH
Q ss_conf 1240433-----3-2-024678765576642---001336773046104---555543101001233125---7652000
Q gi|255764473|r 123 PVINALT-----D-N-THPCQIIADIMTFEE---HRGSVKGKLFSWSGD---GNNILHSLIEGAARFNYL---LNIATPI 186 (306)
Q Consensus 123 pvINa~~-----~-~-~HPtQaL~D~~Ti~e---~~g~l~~~~i~~vGd---~~~v~hS~i~~~~~~g~~---v~~~~P~ 186 (306)
|.--+.- + . =-|+|.+-+.--=.+ .+..++|++|.+|-| -+++....+..+...|++ +.+++|+
T Consensus 310 p~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPp 389 (484)
T PRK07272 310 PYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPE 389 (484)
T ss_pred CHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 51105145031134578996788887363401025455379759998254112675999999999779988999968998
Q ss_pred CCCCC
Q ss_conf 01321
Q gi|255764473|r 187 GSEPR 191 (306)
Q Consensus 187 ~~~~~ 191 (306)
--.|.
T Consensus 390 i~~pc 394 (484)
T PRK07272 390 LKYPC 394 (484)
T ss_pred CCCCC
T ss_conf 57875
No 143
>PRK06545 prephenate dehydrogenase; Validated
Probab=60.49 E-value=6 Score=19.94 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=10.6
Q ss_pred CCCEEEEEECCCCHHHHHH
Q ss_conf 0101112101320067763
Q gi|255764473|r 99 YVDAIVMRTTNHSRLLELT 117 (306)
Q Consensus 99 ~~D~iviR~~~~~~~~~~~ 117 (306)
-.|++|+=+|.......+.
T Consensus 60 ~~DlVvlatPv~~~~~~l~ 78 (357)
T PRK06545 60 EADLIVLAVPVDATAALLA 78 (357)
T ss_pred CCCEEEECCCHHHHHHHHH
T ss_conf 7999999499999999999
No 144
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=60.09 E-value=14 Score=17.58 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=91.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCEEEEEECCCCC----HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5899999999999999996652366654437---9879999428883----57899998986347543333210000123
Q gi|255764473|r 13 NISSSNLSCIIEVAKKIKNSSENIFENKPLS---GKVLAMIFEKPST----RTRVSFEVAMKHLGGDTIFLSGSEMQLGR 85 (306)
Q Consensus 13 dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~---gk~i~~lF~e~St----RTR~SFe~A~~~LG~~~~~~~~~~ss~~k 85 (306)
..+.+.-+.+++.++++--.+... .+.|+ -++|++++..-+. ......+.++.+.|.+++...... .
T Consensus 26 ~Vs~eTr~rV~~a~~elgY~pn~~--Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~----~ 99 (333)
T COG1609 26 YVSEETREKVLAAIKELGYRPNAV--ARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDD----D 99 (333)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----C
T ss_conf 879999999999999978998989--9998747788899994687775899999999999998399899983789----8
Q ss_pred CCCHHHHHHHH-HHCCCEEEEEEC-CCCHHHHHHCCCCCCEECCCCC---CCHHHHHHHHHHHHH---HHCCCCCCCCEE
Q ss_conf 21079999975-300101112101-3200677630124412404333---202467876557664---200133677304
Q gi|255764473|r 86 AETIGDTAKVL-SRYVDAIVMRTT-NHSRLLELTEYATVPVINALTD---NTHPCQIIADIMTFE---EHRGSVKGKLFS 157 (306)
Q Consensus 86 gEsl~Dt~~~l-s~~~D~iviR~~-~~~~~~~~~~~~~vpvINa~~~---~~HPtQaL~D~~Ti~---e~~g~l~~~~i~ 157 (306)
.|..++....+ +..+|++++=.. .+....++.....+|++-.+.. ..+|+=..-|..-.+ ++.-..-..+|+
T Consensus 100 ~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~ 179 (333)
T COG1609 100 PEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIA 179 (333)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 69999999999876989899935878808899998659998999376777789779709899999999999987998599
Q ss_pred EECCCC--CCC----CCHHHCCCCCCEE
Q ss_conf 610455--554----3101001233125
Q gi|255764473|r 158 WSGDGN--NIL----HSLIEGAARFNYL 179 (306)
Q Consensus 158 ~vGd~~--~v~----hS~i~~~~~~g~~ 179 (306)
++|... .+. ..+..++...|..
T Consensus 180 ~i~~~~~~~~~~~R~~Gf~~al~~~~~~ 207 (333)
T COG1609 180 FIGGPLDSSASRERLEGYRAALREAGLP 207 (333)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9967987721899999999999975999
No 145
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=59.51 E-value=14 Score=17.52 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHCCCEEEEEECCCCHHHHHHC---CCCCCEECCCC-CC-CH
Q ss_conf 99989863475433332100001232107999997--53001011121013200677630---12441240433-32-02
Q gi|255764473|r 61 SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKV--LSRYVDAIVMRTTNHSRLLELTE---YATVPVINALT-DN-TH 133 (306)
Q Consensus 61 SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~--ls~~~D~iviR~~~~~~~~~~~~---~~~vpvINa~~-~~-~H 133 (306)
++...+.++|++|.-.|.+ |..-++++. ....+. +-.|+. ..++++. .-++ |+++.= -| .+
T Consensus 72 ~Lse~mAr~Ga~VtgiD~s-------e~~I~~Ak~ha~e~gv~-i~y~~~---~~edl~~~~~~FDv-V~cmEVlEHv~d 139 (243)
T COG2227 72 ILSEPLARLGASVTGIDAS-------EKPIEVAKLHALESGVN-IDYRQA---TVEDLASAGGQFDV-VTCMEVLEHVPD 139 (243)
T ss_pred HHHHHHHHCCCEEEEECCC-------HHHHHHHHHHHHHCCCC-CCCHHH---HHHHHHHCCCCCCE-EEEHHHHHCCCC
T ss_conf 8649999779946974387-------67789998754424632-252233---29999724897448-977358771699
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHC
Q ss_conf 467876557664200133677304610455554310100
Q gi|255764473|r 134 PCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 134 PtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
|-+.+.++..+.+.-| +++.-..||...|+..+
T Consensus 140 p~~~~~~c~~lvkP~G------~lf~STinrt~ka~~~~ 172 (243)
T COG2227 140 PESFLRACAKLVKPGG------ILFLSTINRTLKAYLLA 172 (243)
T ss_pred HHHHHHHHHHHCCCCC------EEEEECCCCCHHHHHHH
T ss_conf 9999999998629992------89994201388999999
No 146
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=59.48 E-value=14 Score=17.60 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEE--CCCCHHHHHHCCCCCCEECCCCCC---C
Q ss_conf 89999898634754333321000012321079999975-30010111210--132006776301244124043332---0
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRT--TNHSRLLELTEYATVPVINALTDN---T 132 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~--~~~~~~~~~~~~~~vpvINa~~~~---~ 132 (306)
-.+.|.++++.|-+++.++.+...... .++..+++ +..+|++++-. ..+....+.-+..++|++--+... .
T Consensus 18 ~~gi~~~~~~~GY~~~i~~~~~~~~~~---~~~~~~~l~~~~vdGiIl~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~ 94 (270)
T cd01545 18 QLGALDACRDTGYQLVIEPCDSGSPDL---AERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPDPD 94 (270)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 999999999849989999699999899---99999999966999899947888999999999977997999878877899
Q ss_pred HHHHHHHHHH-HH---HHHCCCCCCCCEEEECCCC--CCCCCHH----HCCCCCCE
Q ss_conf 2467876557-66---4200133677304610455--5543101----00123312
Q gi|255764473|r 133 HPCQIIADIM-TF---EEHRGSVKGKLFSWSGDGN--NILHSLI----EGAARFNY 178 (306)
Q Consensus 133 HPtQaL~D~~-Ti---~e~~g~l~~~~i~~vGd~~--~v~hS~i----~~~~~~g~ 178 (306)
.|+ +..|-+ .. -++.-..-..+|++++... .....+. .++...|.
T Consensus 95 ~~~-V~~Dn~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~a~~~~gi 149 (270)
T cd01545 95 SPC-VRIDDRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDALAEAGL 149 (270)
T ss_pred CCE-EEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 978-9978899999999999974996599936997773699999999999998399
No 147
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=59.32 E-value=9.9 Score=18.49 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHCCCCCCCCEEEECC-----CCCCCCCH----HHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 2001336773046104-----55554310----10012331257652000013210000243201332221366466306
Q gi|255764473|r 146 EHRGSVKGKLFSWSGD-----GNNILHSL----IEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVK 216 (306)
Q Consensus 146 e~~g~l~~~~i~~vGd-----~~~v~hS~----i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~ 216 (306)
+..+.+++.+|+++|= .+.+..|- +..+...|+++.+.-|.. ++.. . ..+....++.++++
T Consensus 306 ~~l~~~~~~~I~ilGlafK~~tdD~R~Sps~~ii~~L~~~g~~V~~~DP~v--~~~~------~--~~~~~~~~~~~~~~ 375 (411)
T TIGR03026 306 DLLGPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLV--PEEE------V--KGLPLIDDLEEALK 375 (411)
T ss_pred HHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC--CHHH------H--HCCCCCCCHHHHHH
T ss_conf 866311666137874110699985345829999999997889899999989--9899------8--12777799999984
Q ss_pred CCCCCCC-CCEEE
Q ss_conf 8733222-10000
Q gi|255764473|r 217 GAHCVFT-DTWIS 228 (306)
Q Consensus 217 ~aD~V~~-~~~~~ 228 (306)
++|++.. +.|..
T Consensus 376 ~aD~iii~t~h~e 388 (411)
T TIGR03026 376 GADALVILTDHDE 388 (411)
T ss_pred CCCEEEEECCCHH
T ss_conf 6988999559866
No 148
>PRK06141 ornithine cyclodeaminase; Validated
Probab=58.48 E-value=4.8 Score=20.58 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=41.5
Q ss_pred CCCCEEEECCCCCCCCCHHHCC-CCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 6773046104555543101001-23312-57652000013210000243201332221366466306873322210
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGA-ARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~-~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+..+++++|-+. .+.+.++++ ..++. ++.+..+. ..-.+.+.+..+..|..+....+.+++++++|+|.+-.
T Consensus 124 ~~~~l~iiG~G~-QA~~~l~a~~~v~~i~~v~v~~r~-~~~a~~~~~~~~~~~~~~~~~~~~~~av~~aDII~taT 197 (313)
T PRK06141 124 DARRLLVVGTGR-LASLLALAHASVRPIKQVRVWGRN-PAKAAALAAELREQGFDAEVVTDLEAAVRQADIISCAT 197 (313)
T ss_pred CCCEEEEECCHH-HHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEECC
T ss_conf 976799977889-999999999972897589999389-89999999999850997599589999861087799716
No 149
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=58.39 E-value=15 Score=17.41 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q ss_conf 0687332221
Q gi|255764473|r 215 VKGAHCVFTD 224 (306)
Q Consensus 215 l~~aD~V~~~ 224 (306)
++++|+|++.
T Consensus 246 ~~~aDiVItT 255 (510)
T PRK09424 246 AKEVDIIITT 255 (510)
T ss_pred HHHCCEEEEE
T ss_conf 7424779986
No 150
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=57.88 E-value=7.1 Score=19.43 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=12.8
Q ss_pred CCCCCCCHHHHCCCCCCCCC
Q ss_conf 22213664663068733222
Q gi|255764473|r 204 SVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 204 ~i~~~~d~~eal~~aD~V~~ 223 (306)
.+..+.|++++++++|+|+.
T Consensus 57 ~i~~~~dl~~a~~~adiIii 76 (159)
T pfam01210 57 NLRATTDLEEAIKGADIIVL 76 (159)
T ss_pred CEEECCCHHHHHHCCCEEEE
T ss_conf 30542889999837989999
No 151
>PRK08291 ornithine cyclodeaminase; Validated
Probab=57.86 E-value=5.7 Score=20.08 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCC-CCCE-EEEEECHHCCCCCCCCHHH-HHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 3367730461045555431010012-3312-5765200001321000024-3201332221366466306873322210
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAA-RFNY-LLNIATPIGSEPRNEYLNW-ARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~-~~g~-~v~~~~P~~~~~~~~~~~~-~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+-+-.+++++|-+. .+++.++++. .++. ++.+..+..-.- +.+... ....|..+....+.+++++++|+|.+-.
T Consensus 129 r~da~~l~iiG~G~-QA~~~l~Al~~v~~i~~v~v~~r~~~~a-~~f~~~~~~~~g~~v~~~~~~~~av~~aDIIvtaT 205 (330)
T PRK08291 129 REDASRVAVFGAGE-QARLQLEALTLVRDIREVRVWARDAAKA-EAFAAELRAALGIPVTVARDVHAALAGADIVVTTT 205 (330)
T ss_pred CCCCCEEEEECCHH-HHHHHHHHHHHHCCCCEEEEECCCHHHH-HHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEEE
T ss_conf 89985699987648-8999999999738976899983898999-99999998976996699299999972288899976
No 152
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.51 E-value=15 Score=17.30 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=26.8
Q ss_pred HCCCCCCEECC-CCC-CCHHHHHHHHHHH-HHHHCC--CCCCCCEEEECCCCCCCCCHH-HCCCCCCEEEE
Q ss_conf 30124412404-333-2024678765576-642001--336773046104555543101-00123312576
Q gi|255764473|r 117 TEYATVPVINA-LTD-NTHPCQIIADIMT-FEEHRG--SVKGKLFSWSGDGNNILHSLI-EGAARFNYLLN 181 (306)
Q Consensus 117 ~~~~~vpvINa-~~~-~~HPtQaL~D~~T-i~e~~g--~l~~~~i~~vGd~~~v~hS~i-~~~~~~g~~v~ 181 (306)
++...+||||. ++| ..+-||+---.+. +-.... .-....+.++|+.+.+.-.++ ..+.++|..+.
T Consensus 114 s~~~~v~Vv~vs~sGiettFTQGEDa~LaAlvp~~P~~~~~~~~LvlvGsl~d~vedq~~~ll~~lGI~vv 184 (396)
T cd01979 114 SAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVV 184 (396)
T ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 32679559995268754757679999999998647432378886489970581689999999997699246
No 153
>pfam00793 DAHP_synth_1 DAHP synthetase I family. Members of this family catalyse the first step in aromatic amino acid biosynthesis from chorismate. E-coli has three related synthetases, which are inhibited by different aromatic amino acids. This family also includes KDSA which has very similar catalytic activity but is involved in the first step of liposaccharide biosynthesis.
Probab=57.36 E-value=5.1 Score=20.41 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=57.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHH-HHHHHHHHHCCCCC-CCC--CCC-CCCCCC-
Q ss_conf 458999999999999999966523666544379879999428883578-99998986347543-333--210-000123-
Q gi|255764473|r 12 SNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTR-VSFEVAMKHLGGDT-IFL--SGS-EMQLGR- 85 (306)
Q Consensus 12 ~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR-~SFe~A~~~LG~~~-~~~--~~~-~ss~~k- 85 (306)
--.+.+..+.+++.|..+|....+.. -.+. .-.-|++| ||+ .||+- +|.+. +.. +.. ...+.-
T Consensus 23 GPCsies~~~~~~~A~~lk~~~~~~~--i~~i---~ra~f~Kp--rts~~~~~G----~g~~~gL~~l~~i~~~~glpv~ 91 (271)
T pfam00793 23 GPCSIESPEAAMEYAERLKELGAKLK--LPII---MRAYFEKP--RTSPVGFKG----LGNDPGLKILFRVKDGLGLPIA 91 (271)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHC--CEEE---EEECCCCC--CCCCCCCCC----CCCCCCCHHHHHHHHHCCCCHH
T ss_conf 78804399999999999999998709--5089---98434468--999967518----8877560267757765299546
Q ss_pred CCCHH-HHHHHHHHCCCE--EEEEECCCCHHHHHHCCCCCCEE
Q ss_conf 21079-999975300101--11210132006776301244124
Q gi|255764473|r 86 AETIG-DTAKVLSRYVDA--IVMRTTNHSRLLELTEYATVPVI 125 (306)
Q Consensus 86 gEsl~-Dt~~~ls~~~D~--iviR~~~~~~~~~~~~~~~vpvI 125 (306)
-|-+. ..+..++.++|. |..|...+..+.+.+...+.||-
T Consensus 92 TEv~~~~~~~~~~d~vd~~qIgAr~~~~~~l~~~as~~~~pV~ 134 (271)
T pfam00793 92 TEVLDPIDPQYVAEVADIGQIGARTTESQDLLEAASGTSKPVG 134 (271)
T ss_pred HHHCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCEEE
T ss_conf 5652746699998417655345511258999999852698478
No 154
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=55.89 E-value=16 Score=17.13 Aligned_cols=83 Identities=12% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCCEEEEEECCCCC----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHCCCEEEEEECCCCHH---
Q ss_conf 379879999428883----57899998986347543333210000123210799999-7530010111210132006---
Q gi|255764473|r 42 LSGKVLAMIFEKPST----RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK-VLSRYVDAIVMRTTNHSRL--- 113 (306)
Q Consensus 42 l~gk~i~~lF~e~St----RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~-~ls~~~D~iviR~~~~~~~--- 113 (306)
+.-+||+++.-.-+- ...-..|.+++++|.+++..+.... ..+- + +.++ .++..+|+|++=..+...+
T Consensus 24 ~a~~TIgvivp~i~npff~~v~~gie~~a~~~Gy~l~v~~s~~d-~~~q--~-~~i~~li~~~vdgiii~p~d~~~~~~~ 99 (295)
T PRK10653 24 MAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNN-PAKE--L-ANVQDLTVRGTKILLINPTDSDAVGNA 99 (295)
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHH--H-HHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 52997999948987979999999999999976998999839999-9999--9-999999976998899847770656999
Q ss_pred HHHHCCCCCCEECCC
Q ss_conf 776301244124043
Q gi|255764473|r 114 LELTEYATVPVINAL 128 (306)
Q Consensus 114 ~~~~~~~~vpvINa~ 128 (306)
...+....+|||.-.
T Consensus 100 ~~~a~~~gIPvV~~d 114 (295)
T PRK10653 100 VKMANQANIPVITLD 114 (295)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 999997698199995
No 155
>PRK06823 ornithine cyclodeaminase; Validated
Probab=55.72 E-value=6 Score=19.92 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCCCEEEECCCCCCCCCHHHCC-CCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 6773046104555543101001-23312-57652000013210000243201332221366466306873322210
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGA-ARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~-~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+-.+++++|-+. .++..++++ ..++. ++.+..... .-...+.+..+..|..+....+.++++.++|+|.+-.
T Consensus 127 da~~l~iiGtG~-QA~~~l~a~~~v~~i~~v~v~~r~~-~~~~~f~~~~~~~~~~v~~~~~~~eav~~ADIIvtaT 200 (315)
T PRK06823 127 HVKAIGIVGTGI-QARMQLMYLKNVTDCRQLWVWGRSE-TALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCCEEEEECCHH-HHHHHHHHHHHHCCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEEE
T ss_conf 985699977189-9999999998718710999946997-9999999999861990799489999974277479887
No 156
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=55.17 E-value=16 Score=17.08 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCEEEEEECCCCHHHHHH
Q ss_conf 4437987999942888357899998986347543333210000123210799999753--00101112101320067763
Q gi|255764473|r 40 KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLS--RYVDAIVMRTTNHSRLLELT 117 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls--~~~D~iviR~~~~~~~~~~~ 117 (306)
.+|+|+.|-=+=|=.. .+|-. ..++|++|.-+|++.-+ -+.|+.-+ ...+ +-.|+ ..+++++
T Consensus 45 ~~l~G~~ILDVGCGgG---~lse~--LAr~Ga~VtGID~S~~~-------I~~Ar~ha~~~~l~-i~y~~---~~~e~l~ 108 (233)
T PRK05134 45 GGLFGKRVLDVGCGGG---ILSES--MARLGATVTGIDASEEN-------IEVARLHALESGLK-IDYRQ---ITAEELA 108 (233)
T ss_pred CCCCCCEEEEECCCCC---HHHHH--HHHCCCEEEEECCCHHH-------HHHHHHHHHHCCCC-CEEEE---CCHHHHH
T ss_conf 4668998999755897---11289--99679979998799899-------99999985644345-11675---1476654
Q ss_pred CC--CCCCEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHC
Q ss_conf 01--244124043332---02467876557664200133677304610455554310100
Q gi|255764473|r 118 EY--ATVPVINALTDN---THPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 118 ~~--~~vpvINa~~~~---~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
.. .+.=+|-+..-. ..|-+.|..+.-+.+--| +.++--.||+..|++.+
T Consensus 109 ~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPGG------~l~lsTiNrt~~S~l~~ 162 (233)
T PRK05134 109 AEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPGG------LVFFSTLNRNLKSYLLA 162 (233)
T ss_pred HHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCC------EEEEECCCCCHHHHHHH
T ss_conf 3057863477442147753899999999999738991------49997267898999999
No 157
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=54.68 E-value=17 Score=17.00 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCCCC
Q ss_conf 89999898634754-----3333210000123210799999753001011121013200---677630124412404333
Q gi|255764473|r 59 RVSFEVAMKHLGGD-----TIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINALTD 130 (306)
Q Consensus 59 R~SFe~A~~~LG~~-----~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~~~ 130 (306)
.-.+|.+++.||.. ++..|.....-..-+-++ ..+++.+|+|++-..+... ..+.++...||||.--+.
T Consensus 18 ~~~~~~~ak~~~~~~~~~~~~~~da~~D~~kQ~~~ie---~~I~qgvD~Iiv~p~d~~a~~~~l~~A~~aGIpVV~~d~~ 94 (272)
T cd06300 18 LDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIR---NLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH---HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999986376674158999769999999999999---9998599999997897678899999999859969996687
Q ss_pred CCHHH--HHHHHHHH
Q ss_conf 20246--78765576
Q gi|255764473|r 131 NTHPC--QIIADIMT 143 (306)
Q Consensus 131 ~~HPt--QaL~D~~T 143 (306)
...|+ .+-.|-+.
T Consensus 95 ~~~~~~~~V~~dn~~ 109 (272)
T cd06300 95 VTTPCAYNVNEDQAE 109 (272)
T ss_pred CCCCCEEEECCCHHH
T ss_conf 897641895464899
No 158
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.51 E-value=16 Score=17.06 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCEEEEEECCCCH---HHHHHCCCCCCEECCCC
Q ss_conf 8999989863475433332100001232107999997530--01011121013200---67763012441240433
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR--YVDAIVMRTTNHSR---LLELTEYATVPVINALT 129 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~--~~D~iviR~~~~~~---~~~~~~~~~vpvINa~~ 129 (306)
+-..+.|++++|.++..++.....-...+-+++ .++. .+|+|++= +.... +.+.++...||||..-+
T Consensus 19 ~~g~~~aA~~~Gv~l~v~~~~~d~~~q~~~ie~---~I~~~~~vd~Iii~-p~~~~~~~~l~~A~~agIPVv~~d~ 90 (305)
T cd06324 19 ARFMQAAADDLGIELEVLYAERDRFLMLQQART---ILQRPDKPDALIFT-NEKSVAPELLRLAEGAGVKLFLVNS 90 (305)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHHCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999729989997399999999999999---98363797099987-9620018999999976983999658
No 159
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=54.44 E-value=11 Score=18.33 Aligned_cols=68 Identities=25% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCEEEEEECCCCHHH--HHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC---CCCCCHHHCC
Q ss_conf 0101112101320067--7630124412404333202467876557664200133677304610455---5543101001
Q gi|255764473|r 99 YVDAIVMRTTNHSRLL--ELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN---NILHSLIEGA 173 (306)
Q Consensus 99 ~~D~iviR~~~~~~~~--~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~---~v~hS~i~~~ 173 (306)
-+|++|==..++.... +++....+|+|-+=+|.+ +.| +-.|++. -++..+.|.+..+ |+..-++..+
T Consensus 69 ~~DVvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~~-~~~----~~~i~~~---s~~ipil~apNfSlGvnll~~l~~~a 140 (265)
T PRK00048 69 DFDVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT-EEQ----LAALREA---AKKIPVVIAPNFSVGVNLLMKLAEKA 140 (265)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC-HHH----HHHHHHH---CCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 599899899889999999999974997799608999-899----9999974---65887899785589999999999999
Q ss_pred C
Q ss_conf 2
Q gi|255764473|r 174 A 174 (306)
Q Consensus 174 ~ 174 (306)
+
T Consensus 141 a 141 (265)
T PRK00048 141 A 141 (265)
T ss_pred H
T ss_conf 9
No 160
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=53.87 E-value=8.2 Score=19.04 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 7664200133677304610455554310100123312-576520000132100002432013322213664663068733
Q gi|255764473|r 142 MTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHC 220 (306)
Q Consensus 142 ~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~ 220 (306)
.++++....++++++.++|.++ +++|-+.++..+|. ++.+.....-.. ..+.+........+ ...+..+...+.|+
T Consensus 8 ~~l~~~~~~~~~k~vlIlGaGG-aarai~~aL~~~g~~~I~i~nR~~~r~-~~l~~~~~~~~~~~-~~~~~~~~~~~~dl 84 (155)
T cd01065 8 RALEEAGIELKGKKVLILGAGG-AARAVAYALAELGAAKIVIVNRTLEKA-KALAERFGELGIAI-AYLDLEELLAEADL 84 (155)
T ss_pred HHHHHCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHCCCCE-EECCHHHHHCCCCE
T ss_conf 9999729985799999986758-999999999971998228860899999-99999850136640-10453443156887
Q ss_pred CCCC
Q ss_conf 2221
Q gi|255764473|r 221 VFTD 224 (306)
Q Consensus 221 V~~~ 224 (306)
|+-.
T Consensus 85 iIN~ 88 (155)
T cd01065 85 IINT 88 (155)
T ss_pred EEEC
T ss_conf 9876
No 161
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=53.66 E-value=17 Score=16.90 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=44.2
Q ss_pred CEEEEEECCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 8799994288835789---------9998986347543333210000123210799999753001011121
Q gi|255764473|r 45 KVLAMIFEKPSTRTRV---------SFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMR 106 (306)
Q Consensus 45 k~i~~lF~e~StRTR~---------SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR 106 (306)
.||+-.|+.|.+..|+ .|+.++++-|.-...++...=|-.-.+-+-|+++.--.-+|++|.-
T Consensus 68 ~TiGV~fEr~~~~~k~gtaGWYN~~aF~~~A~~~Gl~a~~~ngDAFS~e~K~~vI~~Ik~~~G~vDlvVYS 138 (400)
T PRK13656 68 DTLGVFFERPGSEKKPGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYS 138 (400)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 72678851588899877864316899999999779721214520067899999999999865984679996
No 162
>PRK06701 short chain dehydrogenase; Provisional
Probab=53.32 E-value=5.6 Score=20.10 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=46.5
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEEEC--CCCHH
Q ss_conf 665443798799994288835789999898634754333321000012321079999975300-101112101--32006
Q gi|255764473|r 37 FENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY-VDAIVMRTT--NHSRL 113 (306)
Q Consensus 37 ~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~-~D~iviR~~--~~~~~ 113 (306)
..+-.|+||++ ++ ==.|.-==.++..+..+.|+++...+.. ..+..+++...++.+ .+++.+... +...+
T Consensus 38 ~~~grL~GKva-lV-TGgs~GIG~aiA~~la~~GA~V~i~~~~-----~~~~a~~~~~~~~~~G~~~~~~~~Dv~d~~~v 110 (289)
T PRK06701 38 KGSGKLKGKVA-LI-TGGDSGIGRAVAVAFAKEGADIAIVYLD-----EHEDANETKQRVEKEGVKCLLIPGDVSDEQFC 110 (289)
T ss_pred CCCCCCCCCEE-EE-ECCCCHHHHHHHHHHHHCCCEEEEEECC-----CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 66887799989-99-6825799999999999879989998289-----46789999999996399089998478999999
Q ss_pred HHHH-----C--CCCCCEECCCCC-CCHHHH
Q ss_conf 7763-----0--124412404333-202467
Q gi|255764473|r 114 LELT-----E--YATVPVINALTD-NTHPCQ 136 (306)
Q Consensus 114 ~~~~-----~--~~~vpvINa~~~-~~HPtQ 136 (306)
..+. + ..++-|-|||.. ..-|..
T Consensus 111 ~~~v~~~~~~fG~iDiLVNNAG~~~~~~~~~ 141 (289)
T PRK06701 111 KDAVEETVRELGRLDILVNNAAQQYPQQSLE 141 (289)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCHH
T ss_conf 9999999998599989998883467888724
No 163
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.28 E-value=8.5 Score=18.93 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=6.4
Q ss_pred CEEEEEECCCCHHHHHHC
Q ss_conf 011121013200677630
Q gi|255764473|r 101 DAIVMRTTNHSRLLELTE 118 (306)
Q Consensus 101 D~iviR~~~~~~~~~~~~ 118 (306)
++|..=..+.-.+.++++
T Consensus 107 ~~IlASNTSsl~is~ia~ 124 (310)
T PRK06130 107 QTIFATNTSGLSINAIAQ 124 (310)
T ss_pred CCEEEECCCCCCCHHHHH
T ss_conf 838996488776067888
No 164
>PRK07589 ornithine cyclodeaminase; Validated
Probab=52.14 E-value=7 Score=19.50 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred CCCCEEEECCCCCCCCCHHHCC-CCCCEE-EEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 6773046104555543101001-233125-7652000013210000243201332221366466306873322210
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGA-ARFNYL-LNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~-~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+...++++|-+. -+...++++ ..++.+ +.+.....- -...+.......|..+....+.++++++||+|.|-.
T Consensus 128 ds~~l~iIGtG~-QA~~Q~~A~~~vr~i~~V~v~~r~~~-~a~~~a~~l~~~g~~v~~~~s~~eAv~~ADIIvTaT 201 (346)
T PRK07589 128 DSRTMALIGNGA-QSEFQALAFKALLGIEEIRLYDIDPA-ATAKLARNLAGPGLRIVRCRSVAEAVEGADIITTVT 201 (346)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEEEC
T ss_conf 987699974708-89999999998589868999828879-999999998726980899499999972198888711
No 165
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.81 E-value=19 Score=16.71 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=14.4
Q ss_pred CCCEEEEEECCCC---HHHHHHCC-CCCCEECCCC
Q ss_conf 0101112101320---06776301-2441240433
Q gi|255764473|r 99 YVDAIVMRTTNHS---RLLELTEY-ATVPVINALT 129 (306)
Q Consensus 99 ~~D~iviR~~~~~---~~~~~~~~-~~vpvINa~~ 129 (306)
-+|++++=.+++. .+.++..+ .+..||+-.-
T Consensus 66 ~~d~IilavKP~~~~~vl~~i~~~~~~~~iISi~A 100 (245)
T PRK07634 66 SVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAA 100 (245)
T ss_pred HCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 59999999891749999999877606988999817
No 166
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=51.56 E-value=11 Score=18.24 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCEEECC
Q ss_conf 222136646630687332221000000
Q gi|255764473|r 204 SVALFHDAVQAVKGAHCVFTDTWISMN 230 (306)
Q Consensus 204 ~i~~~~d~~eal~~aD~V~~~~~~~~~ 230 (306)
.+.+++|-.|++++||+|++ |..-+
T Consensus 126 g~~vttddreavedad~iit--wlpkg 150 (343)
T COG4074 126 GIVVTTDDREAVEDADMIIT--WLPKG 150 (343)
T ss_pred EEEEECCCHHHHCCCCEEEE--ECCCC
T ss_conf 13885372766457775999--44688
No 167
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=51.46 E-value=16 Score=17.13 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=58.3
Q ss_pred CCEEEECCCCCCCCCHHHCC---CCCCEE----EEEECHHC-CCCC----CCCHHHHHCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 73046104555543101001---233125----76520000-1321----000024320133222136646630687332
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGA---ARFNYL----LNIATPIG-SEPR----NEYLNWARNQGASVALFHDAVQAVKGAHCV 221 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~---~~~g~~----v~~~~P~~-~~~~----~~~~~~~~~~g~~i~~~~d~~eal~~aD~V 221 (306)
++|++-|=.+-|..|++... ..||.+ +.+.--+. ...- -|+.+=|-..=..|..++|+.||++|+|+=
T Consensus 4 ~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCAFPlL~~v~~T~~p~eAF~dvD~A 83 (329)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCAFPLLAGVVATTDPEEAFKDVDVA 83 (329)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCEE
T ss_conf 37997374467899998898556104889846888607723311334435535306452235112216868751898757
Q ss_pred C-CCCEEE---CCCCCHHHHHHCCCCCCCCHHHHH-CCCCCCEEECCC-CCCCCCCCCH
Q ss_conf 2-210000---002201333100111233688996-289872992599-9874873576
Q gi|255764473|r 222 F-TDTWIS---MNQEFKAREEHVFQPFQVNLSLMS-MAHPDALFMHCL-PAHRGEEVIN 274 (306)
Q Consensus 222 ~-~~~~~~---~~~~~~~~~~~~~~~y~i~~~~l~-~a~~~~~vmHpl-P~~rg~EI~~ 274 (306)
. .....+ |...+..+.+. +=|+-.-+-|. .||||++|+==| |+|=|-.|..
T Consensus 84 lLvGa~PRK~GMER~DLL~~Ng--~IF~~QG~aLn~~Ak~~vKVLVVGNPaNTNaLIa~ 140 (329)
T TIGR01759 84 LLVGAFPRKPGMERRDLLSKNG--KIFKEQGKALNKVAKKDVKVLVVGNPANTNALIAS 140 (329)
T ss_pred EEECCCCCCCCCCHHHHHHHCC--HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf 7613668958844799987222--54687999999861898569985298627999999
No 168
>PRK09117 consensus
Probab=51.23 E-value=9.6 Score=18.59 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.1
Q ss_pred HHHCCHHHHHHHHHH
Q ss_conf 445899999999999
Q gi|255764473|r 11 LSNISSSNLSCIIEV 25 (306)
Q Consensus 11 ~~dl~~~~i~~ll~~ 25 (306)
+-|.+.+.+..-.+.
T Consensus 30 l~D~~~~~l~~~~~~ 44 (282)
T PRK09117 30 MVDISDAAVQRGLAT 44 (282)
T ss_pred EEECCHHHHHHHHHH
T ss_conf 998988999999999
No 169
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.03 E-value=18 Score=16.75 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC---HHHHHHCCCCCCEECCCC---CC
Q ss_conf 789999898634754333321000012321079999975300101112101320---067763012441240433---32
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS---RLLELTEYATVPVINALT---DN 131 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~---~~~~~~~~~~vpvINa~~---~~ 131 (306)
-.-..|.++++.|.+++..+... +..+ | .+..-..++..+|+|++-..+.. ...+.+....+|||.--. +.
T Consensus 17 v~~gie~~a~~~G~~~~i~~s~~-d~~~-q-~~~i~~li~~~vDgiIi~p~~~~~~~~~~~~~~~~gIPvV~~d~~~~~~ 93 (267)
T cd06322 17 LANAMKEEAKKQKVNLIVSIANQ-DLNK-Q-LSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDIAAEGV 93 (267)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC-CHHH-H-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999997499999983999-9999-9-9999999974999999906761010699999997599789983465556
Q ss_pred CHHHHHHHHHHHH----HHHCCC-CCC-CCEEEECCC
Q ss_conf 0246787655766----420013-367-730461045
Q gi|255764473|r 132 THPCQIIADIMTF----EEHRGS-VKG-KLFSWSGDG 162 (306)
Q Consensus 132 ~HPtQaL~D~~Ti----~e~~g~-l~~-~~i~~vGd~ 162 (306)
.-.+..-.|=+.- -|+... +.+ .+|++++.+
T Consensus 94 ~~~~~V~~Dn~~~g~~a~~~l~~~l~g~~~i~~i~~~ 130 (267)
T cd06322 94 AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYP 130 (267)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 6432996262899999999999973389459999179
No 170
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=50.98 E-value=12 Score=17.86 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=11.8
Q ss_pred CCEEEEEECCCCHHHHHHCCCC
Q ss_conf 1011121013200677630124
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEYAT 121 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~~~ 121 (306)
.|+|..=..+.-.+.++++..+
T Consensus 113 ~~~IlaSNTSsl~is~ia~~~~ 134 (291)
T PRK06035 113 PETIIASNTSGIMIAEIATALE 134 (291)
T ss_pred CCCEEEECCCCCCHHHHHHHCC
T ss_conf 9837986088778699997659
No 171
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=50.70 E-value=13 Score=17.73 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=57.5
Q ss_pred CEEEECCCCCCCCCHHHCCCCCC--EEEEEECHHCCCCCCCCHHHH---HCCCCCCCCCCCHHHHCCCCCCCCCCCE-EE
Q ss_conf 30461045555431010012331--257652000013210000243---2013322213664663068733222100-00
Q gi|255764473|r 155 LFSWSGDGNNILHSLIEGAARFN--YLLNIATPIGSEPRNEYLNWA---RNQGASVALFHDAVQAVKGAHCVFTDTW-IS 228 (306)
Q Consensus 155 ~i~~vGd~~~v~hS~i~~~~~~g--~~v~~~~P~~~~~~~~~~~~~---~~~g~~i~~~~d~~eal~~aD~V~~~~~-~~ 228 (306)
||+++|-+++|.-+....+..-+ -++.++.-..-....+..+.. ........+..+..++++++|+|....= .+
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~~~ 81 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGVPR 81 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCCCC
T ss_conf 89998987789999999997479663478850577641179999861443478876974883888378999998157778
Q ss_pred CCCCCHHHHHHCCCCCC----CCHHHHHCCCCCCE-EECCCCCCCCCCCCHHHHCCCCCHHH
Q ss_conf 00220133310011123----36889962898729-92599987487357679679971068
Q gi|255764473|r 229 MNQEFKAREEHVFQPFQ----VNLSLMSMAHPDAL-FMHCLPAHRGEEVINEVLDGPQSVVF 285 (306)
Q Consensus 229 ~~~~~~~~~~~~~~~y~----i~~~~l~~a~~~~~-vmHplP~~rg~EI~~~v~d~~~s~~~ 285 (306)
.......+. ...+-+ +-.++ .+..|+++ ++=-=|++.-.-+......-|+..++
T Consensus 82 k~g~~R~dl--l~~Na~I~~~i~~~i-~~~~p~~ivivvtNPvDvmt~~~~~~sg~p~~rVi 140 (142)
T pfam00056 82 KPGMTRLDL--LNRNAGIFKDIVPAI-AKSAPDAIVLVVSNPVDILTYIAWKVSGLPPERVI 140 (142)
T ss_pred CCCCCHHHH--HHHHHHHHHHHHHHH-HHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 999877899--997469999999999-97699819999459468899999999784943110
No 172
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.04 E-value=20 Score=16.53 Aligned_cols=37 Identities=14% Similarity=-0.009 Sum_probs=21.4
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 01336773046104555543101001233125765200
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
+..|+|+++++...+. -.+|++.++.-+|+++..++.
T Consensus 295 r~~L~GKrv~i~~Gg~-~~~~~i~~~~eLGmevV~~g~ 331 (421)
T cd01976 295 RPRLEGKTVMLYVGGL-RPRHYIGAYEDLGMEVVGTGY 331 (421)
T ss_pred HHHCCCCEEEEECCCC-CHHHHHHHHHHCCCEEEEEEE
T ss_conf 9870898899989987-468999999987988999731
No 173
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=49.21 E-value=20 Score=16.45 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=47.1
Q ss_pred EEEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCEEEEEECC--CCHHHHHHC
Q ss_conf 7999942888----3578999989863475433332100001232107999997-53001011121013--200677630
Q gi|255764473|r 46 VLAMIFEKPS----TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKV-LSRYVDAIVMRTTN--HSRLLELTE 118 (306)
Q Consensus 46 ~i~~lF~e~S----tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~-ls~~~D~iviR~~~--~~~~~~~~~ 118 (306)
||+++...-+ .+-.-.++.++.+.|.+++..+..... +.-...++. ++..+|++++-... .........
T Consensus 1 tIgvi~p~~~~~f~~~~~~gi~~~a~~~gy~~~~~~~~~~~----~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~ 76 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLANSQNDA----EKQLSALENLIARGVDGIIIAPSDLTAPTIVKLAR 76 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 98999788977999999999999999869989999799998----99999999999769999999679888689999999
Q ss_pred CCCCCEECCCC
Q ss_conf 12441240433
Q gi|255764473|r 119 YATVPVINALT 129 (306)
Q Consensus 119 ~~~vpvINa~~ 129 (306)
..++|||.-+.
T Consensus 77 ~~~ipvV~~~~ 87 (264)
T cd01537 77 KAGIPVVLVDR 87 (264)
T ss_pred HCCCCEEEECC
T ss_conf 75997999856
No 174
>PRK09519 recA recombinase A; Reviewed
Probab=49.21 E-value=20 Score=16.44 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=58.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHH--HHHHCCCCCCCCCCCC-------------------CCCCCCCCHHHHHHHH--HHC
Q ss_conf 7987999942888357899998--9863475433332100-------------------0012321079999975--300
Q gi|255764473|r 43 SGKVLAMIFEKPSTRTRVSFEV--AMKHLGGDTIFLSGSE-------------------MQLGRAETIGDTAKVL--SRY 99 (306)
Q Consensus 43 ~gk~i~~lF~e~StRTR~SFe~--A~~~LG~~~~~~~~~~-------------------ss~~kgEsl~Dt~~~l--s~~ 99 (306)
+|+.+-..=.|.|-.|-++..+ .+++.||.+.++|..+ |+...||-.-+.+.+| |.-
T Consensus 59 rGRIvEIyGpESSGKTTLALH~IAeaQK~GG~aAfIDAEhAlDp~yA~~LGVdld~LLisQPdtGEqALeIae~LIrSga 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHCEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 60499987897765899999999999853997999952002599999983957678068579808899999999985489
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCC--EECCCCCCCHHH-HHHHHHHHHHHHCCCC
Q ss_conf 101112101320067763012441--240433320246-7876557664200133
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEYATVP--VINALTDNTHPC-QIIADIMTFEEHRGSV 151 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~~~vp--vINa~~~~~HPt-QaL~D~~Ti~e~~g~l 151 (306)
+|+||+-.- . +-+| -|.+.=+.+|.. ||-+==..|++.-+.+
T Consensus 139 vDlIVVDSV--A--------ALvPKaEieGemgD~~vGlQARLMSqALRKLT~~I 183 (790)
T PRK09519 139 LDIVVIDSV--A--------ALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 (790)
T ss_pred CCEEEEECC--C--------CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 548998053--4--------56878886164566428899999999999998776
No 175
>KOG2711 consensus
Probab=49.17 E-value=14 Score=17.47 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=19.9
Q ss_pred CCEEEEEECCC---CHHHHHHCCC--CCCEECC---CC-CCCHH-HHHHHHHHH
Q ss_conf 10111210132---0067763012--4412404---33-32024-678765576
Q gi|255764473|r 100 VDAIVMRTTNH---SRLLELTEYA--TVPVINA---LT-DNTHP-CQIIADIMT 143 (306)
Q Consensus 100 ~D~iviR~~~~---~~~~~~~~~~--~vpvINa---~~-~~~HP-tQaL~D~~T 143 (306)
.|++|.-.|.+ ....++..+. +++.|+. .. +..+| -|.+.++.+
T Consensus 106 ADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711 106 ADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCEEEHHHHHH
T ss_conf 888999487154799999985425799807885404141688884463699999
No 176
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=48.66 E-value=21 Score=16.39 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCCC-HHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECCCCHHHHHHCCCCCCEEC
Q ss_conf 8883-5789999898634754---333321000012321079999975-300101112101320067763012441240
Q gi|255764473|r 53 KPST-RTRVSFEVAMKHLGGD---TIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTNHSRLLELTEYATVPVIN 126 (306)
Q Consensus 53 e~St-RTR~SFe~A~~~LG~~---~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~~~~~~~~~~~~~vpvIN 126 (306)
.||. -.|-.|.-+.+++|.. -+.++...-+ +-.+.+.-.++-| +.-+|+|+.=..... ......-.++||+=
T Consensus 10 h~~ld~~~~Gf~~~L~~~G~~~g~nv~~~~~na~-gd~~~l~~ia~~l~~~~~DlIva~gTpaa-qa~~~~~~~iPIVF 86 (281)
T cd06325 10 HPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQ-GDQSNLPTIARKFVADKPDLIVAIATPAA-QAAANATKDIPIVF 86 (281)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC-CCHHHHHHHHHHHHHCCCCEEEECCHHHH-HHHHHCCCCCCEEE
T ss_conf 6747999999999999649767983799996079-99999999999998549999998770999-99996279999899
No 177
>TIGR02685 pter_reduc_Leis pteridine reductase; InterPro: IPR014058 Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family..
Probab=48.29 E-value=12 Score=17.95 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=82.9
Q ss_pred CCCCCCCCCHH-HHHHHHHHC--CCEEEEEECCCCHHHHHHC--CCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00012321079-999975300--1011121013200677630--124412404333-20246787655766420013367
Q gi|255764473|r 80 EMQLGRAETIG-DTAKVLSRY--VDAIVMRTTNHSRLLELTE--YATVPVINALTD-NTHPCQIIADIMTFEEHRGSVKG 153 (306)
Q Consensus 80 ~ss~~kgEsl~-Dt~~~ls~~--~D~iviR~~~~~~~~~~~~--~~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~g~l~~ 153 (306)
.||.+.+|+++ ..+..++.. .-.+-+|-+-+-.-.+-.+ ..+..|+|..|- ..-|+-+-. +|||-+| -|+|
T Consensus 122 Gss~~~~k~~e~~vAeLfGsNAiAP~fLi~aFAqR~~gt~~~~rs~nlSiVNl~DAMtdqPl~gf~-~YtMaK~--AL~G 198 (283)
T TIGR02685 122 GSSVADKKSVEVQVAELFGSNAIAPYFLIKAFAQRQKGTRAEQRSTNLSIVNLCDAMTDQPLLGFT-LYTMAKH--ALEG 198 (283)
T ss_pred CCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHCCCHHHHH-HHHHHHH--HHHH
T ss_conf 733345650888878651523577899999887410578756555544212120341046613566-8776789--8666
Q ss_pred CCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHH-CCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 7304610455554310100123312576520000132100002432-013322213664663068733222
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWAR-NQGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~-~~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
|+ +|=..-++-++.+|+-++|---..|+...+..+ ++--|+.....--.|-+=+|+|+=
T Consensus 199 LT-----------rsAALELAp~~IRVNgVaPGlSlLP~aMp~e~qe~yRRKVPLgqreaSAe~iaDvviF 258 (283)
T TIGR02685 199 LT-----------RSAALELAPLQIRVNGVAPGLSLLPDAMPEEVQEDYRRKVPLGQREASAEQIADVVIF 258 (283)
T ss_pred HH-----------HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEE
T ss_conf 67-----------9999861425515632468750078778864221244668777762335646108866
No 178
>KOG0068 consensus
Probab=48.22 E-value=21 Score=16.35 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCEEEEEECCCCHH-HHHHCCCCCCEECCCCC-----CCHHHHHHHHHHH--------HHH-------HCC-CCCCCCEE
Q ss_conf 10111210132006-77630124412404333-----2024678765576--------642-------001-33677304
Q gi|255764473|r 100 VDAIVMRTTNHSRL-LELTEYATVPVINALTD-----NTHPCQIIADIMT--------FEE-------HRG-SVKGKLFS 157 (306)
Q Consensus 100 ~D~iviR~~~~~~~-~~~~~~~~vpvINa~~~-----~~HPtQaL~D~~T--------i~e-------~~g-~l~~~~i~ 157 (306)
.-++..|+..-..+ ...|.--.+-|+|.-.. .+|-|--|+-+.- +++ ..| .+.|++++
T Consensus 71 lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLg 150 (406)
T KOG0068 71 LKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLG 150 (406)
T ss_pred EEEEEECCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCEEECCEEEEEEECCEEE
T ss_conf 48998513575654725577578389958988717799999999999751203100154358411012014677566788
Q ss_pred EECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHH
Q ss_conf 61045555431010012331257652000013210000243201332221366466306873322210000002201333
Q gi|255764473|r 158 WSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKARE 237 (306)
Q Consensus 158 ~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~ 237 (306)
++|- +++..-....+..+|+.+....|.. |. +.++..|..+ -+++|.+..||+|..-+ +..+.-
T Consensus 151 vlG~-GrIGseVA~r~k~~gm~vI~~dpi~--~~----~~~~a~gvq~---vsl~Eil~~ADFitlH~------PLtP~T 214 (406)
T KOG0068 151 VLGL-GRIGSEVAVRAKAMGMHVIGYDPIT--PM----ALAEAFGVQL---VSLEEILPKADFITLHV------PLTPST 214 (406)
T ss_pred EEEC-CCCHHHHHHHHHHCCCEEEEECCCC--CH----HHHHHCCCEE---EEHHHHHHHCCEEEECC------CCCCCH
T ss_conf 8504-6211899999986585488606878--46----7787516545---40988775568899816------788214
Q ss_pred HHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 1001112336889962898729925999874873576
Q gi|255764473|r 238 EHVFQPFQVNLSLMSMAHPDALFMHCLPAHRGEEVIN 274 (306)
Q Consensus 238 ~~~~~~y~i~~~~l~~a~~~~~vmHplP~~rg~EI~~ 274 (306)
+ -.+|.+.++++|+.+.+--+- ||--|+.
T Consensus 215 ~-----~lin~~tfA~mKkGVriIN~a---RGGvVDe 243 (406)
T KOG0068 215 E-----KLLNDETFAKMKKGVRIINVA---RGGVVDE 243 (406)
T ss_pred H-----HCCCHHHHHHHHCCCEEEEEC---CCCEECH
T ss_conf 3-----113878999860785899824---7752063
No 179
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=47.98 E-value=21 Score=16.32 Aligned_cols=37 Identities=38% Similarity=0.510 Sum_probs=28.0
Q ss_pred HHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCH
Q ss_conf 53001011121013200677630124412404333202
Q gi|255764473|r 96 LSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTH 133 (306)
Q Consensus 96 ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~H 133 (306)
...|+|+++.|+. ........+.+.+|||-.++|..|
T Consensus 193 ~~~~vdliiprGg-~~li~~v~~~a~vPvi~~~~G~~h 229 (416)
T PRK00197 193 LDGYVDVLIPRGG-AGLIKRVVEEATVPVIETGVGNCH 229 (416)
T ss_pred CCCCCCEEEECCC-HHHHHHHHHHCCCCEEEECCCCCE
T ss_conf 4787338993686-578899986377878961588532
No 180
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=47.68 E-value=9.7 Score=18.54 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=11.5
Q ss_pred CCEEEEEECCCCHHHHHH
Q ss_conf 101112101320067763
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELT 117 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~ 117 (306)
+|++|+=+|-+.....+.
T Consensus 59 aDliila~Pv~~~~~~~~ 76 (280)
T PRK07417 59 CDLVILALPIGLLLPPSE 76 (280)
T ss_pred CCEEEECCCHHHHHHHHH
T ss_conf 998998797477899999
No 181
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=47.64 E-value=22 Score=16.29 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=66.7
Q ss_pred CHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHHHHH-------------------------HHCCCCCCCCEE-EECC-C
Q ss_conf 006776301244124043-33202467876557664-------------------------200133677304-6104-5
Q gi|255764473|r 111 SRLLELTEYATVPVINAL-TDNTHPCQIIADIMTFE-------------------------EHRGSVKGKLFS-WSGD-G 162 (306)
Q Consensus 111 ~~~~~~~~~~~vpvINa~-~~~~HPtQaL~D~~Ti~-------------------------e~~g~l~~~~i~-~vGd-~ 162 (306)
....++.+.=.+|.||+- =|.+==+|+|.++.-+. +++..|+|+|++ |+|- .
T Consensus 269 nlA~~m~~~YGIPyf~~SFyGi~Dt~~aLr~~A~~fgd~~l~~RtE~li~~E~~~~~~~l~~yR~~L~GKkaaiY~GGa~ 348 (470)
T TIGR01283 269 NLARKMEEKYGIPYFEVSFYGIEDTSKALRDIAELFGDEELLKRTEELIAEEEAKIRPELEPYRERLKGKKAAIYTGGAV 348 (470)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 89999996468975872141088899999999976398879999999999999999999999899734988998658647
Q ss_pred CCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHC-CCCCCCCCC--CHHHH-----CCCCCCCCCCCE
Q ss_conf 55543101001233125765200001321000024320-133222136--64663-----068733222100
Q gi|255764473|r 163 NNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARN-QGASVALFH--DAVQA-----VKGAHCVFTDTW 226 (306)
Q Consensus 163 ~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~-~g~~i~~~~--d~~ea-----l~~aD~V~~~~~ 226 (306)
=.-|+|.++.-||++|...+-..--+.+ + +.++. .+......+ ++.+. =..||+++....
T Consensus 349 --KswSlv~Al~dLGMeVV~~GTqkg~~ED-y-~~I~e~~~~~~~m~Dd~~p~~L~~~~~~~~ADlliaGgk 416 (470)
T TIGR01283 349 --KSWSLVSALQDLGMEVVATGTQKGTEED-Y-ERIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAGGK 416 (470)
T ss_pred --HHHHHHHHHHHCCCEEEEEEECCCCHHH-H-HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEECCH
T ss_conf --8999998884579179998300798889-9-999997079967862588789999998728988985731
No 182
>KOG2431 consensus
Probab=47.59 E-value=5.3 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHHCCCCCC--EECCCCCCCHHHHH-----HHHHHHHHHHCCCC
Q ss_conf 763012441--24043332024678-----76557664200133
Q gi|255764473|r 115 ELTEYATVP--VINALTDNTHPCQI-----IADIMTFEEHRGSV 151 (306)
Q Consensus 115 ~~~~~~~vp--vINa~~~~~HPtQa-----L~D~~Ti~e~~g~l 151 (306)
.+...+.|| =||.+++.+||-+. ++.+.|++-.|..+
T Consensus 210 AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~L 253 (546)
T KOG2431 210 AFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYL 253 (546)
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHEEEEEEHHHH
T ss_conf 64589999840014577763699988763223300000007888
No 183
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=47.43 E-value=22 Score=16.27 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=9.0
Q ss_pred CCCCHHHHHHCCCCCC---EECCCC
Q ss_conf 1320067763012441---240433
Q gi|255764473|r 108 TNHSRLLELTEYATVP---VINALT 129 (306)
Q Consensus 108 ~~~~~~~~~~~~~~vp---vINa~~ 129 (306)
|-+-..+.+.+.+..| ||..|+
T Consensus 119 PvDvmt~~~~k~sg~p~~rViG~gT 143 (306)
T cd05291 119 PVDVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred CHHHHHHHHHHHCCCCHHHEECCCC
T ss_conf 1678999999850998666115454
No 184
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.25 E-value=12 Score=17.90 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHHHHC--CCEEEEEECCCCHHHHHHCCC
Q ss_conf 999975300--101112101320067763012
Q gi|255764473|r 91 DTAKVLSRY--VDAIVMRTTNHSRLLELTEYA 120 (306)
Q Consensus 91 Dt~~~ls~~--~D~iviR~~~~~~~~~~~~~~ 120 (306)
+..+-++.+ .|+|+.=..+.-.+.++++..
T Consensus 99 ~vf~~le~~~~~~~IlaSnTSsl~is~la~~~ 130 (282)
T PRK05808 99 KIFAQLDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC
T ss_conf 99999995579984899758877669999772
No 185
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=47.17 E-value=9.7 Score=18.54 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 243201332221366466306873322210
Q gi|255764473|r 196 NWARNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 196 ~~~~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+..+..|..++..+|+.+|+..||+|.|..
T Consensus 173 ~L~~~~G~~v~a~td~~~A~~~ADI~vTtT 202 (326)
T TIGR02992 173 QLSSELGIDVTAATDVRAALSGADIIVTTT 202 (326)
T ss_pred HHHHHCCEEEEECCCHHHHCCCCCEEEECC
T ss_conf 988746906875047686236688798748
No 186
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=47.03 E-value=20 Score=16.51 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEE--CCCCHHHHHHCCCCCCEECCCCC--
Q ss_conf 35789999898634754333321000012321079999975-30010111210--13200677630124412404333--
Q gi|255764473|r 56 TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRT--TNHSRLLELTEYATVPVINALTD-- 130 (306)
Q Consensus 56 tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~--~~~~~~~~~~~~~~vpvINa~~~-- 130 (306)
.+---+.|.++++.|-+++..+..... |.-.+.++.| +..+|++++=. ..+....+......+||+-....
T Consensus 15 ~~~~~gie~~~~~~Gy~~~i~~t~~~~----~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~ 90 (266)
T cd06282 15 AECVQGIQEEARAAGYSLLLATTDYDA----EREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQ 90 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999999999999879989999799997----9999999999965998799963787755999999855997899950478
Q ss_pred CCHHHHHHHHHHH----HHHHCCCCCCCCEEEECC
Q ss_conf 2024678765576----642001336773046104
Q gi|255764473|r 131 NTHPCQIIADIMT----FEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 131 ~~HPtQaL~D~~T----i~e~~g~l~~~~i~~vGd 161 (306)
..+|| +-.|-+. +-++.-..-..+|++++.
T Consensus 91 ~~~~~-V~~Dn~~~~~~~~~~L~~~G~~~i~~i~~ 124 (266)
T cd06282 91 PGRPS-VSVDNRAAARDVAQALAALGHRRIAMLAG 124 (266)
T ss_pred CCCCE-EEECHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99998-99887999999999999739956999977
No 187
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=46.80 E-value=22 Score=16.20 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCEEEEEECC-CCHHHHHHCCCCCCEECCCCCCCHHH
Q ss_conf 78999989863475433332100001232107999997-53001011121013-20067763012441240433320246
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKV-LSRYVDAIVMRTTN-HSRLLELTEYATVPVINALTDNTHPC 135 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~-ls~~~D~iviR~~~-~~~~~~~~~~~~vpvINa~~~~~HPt 135 (306)
---+.|.++.+.|-+++..+... +..+. ++.+.. ++..+|++++-... ........+..++||+-.++...+|.
T Consensus 17 l~~gi~~~~~~~gy~~~i~~s~~-d~~~e---~~~i~~l~~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~ 92 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGY-SPERE---EELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLPPDPI 92 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 99999999998699999997899-98999---999999995699999994377998999999977996998488688888
Q ss_pred H--HHHHHHH----HHHHCCCCCCCCEEEECCC
Q ss_conf 7--8765576----6420013367730461045
Q gi|255764473|r 136 Q--IIADIMT----FEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 136 Q--aL~D~~T----i~e~~g~l~~~~i~~vGd~ 162 (306)
. .-.|-+. .-++.-..--.+|++++..
T Consensus 93 ~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~ 125 (268)
T cd01575 93 DMAVGFSHAEAGRAMARHLLARGYRRIGFLGAR 125 (268)
T ss_pred CCEEECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 858973889999999999997499769998489
No 188
>PRK08618 ornithine cyclodeaminase; Validated
Probab=46.54 E-value=11 Score=18.15 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCCEEEECCCCCCCCCHHHCCCC-CCE-EEEEECHHCCCCCCCCHHHH-HCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 677304610455554310100123-312-57652000013210000243-201332221366466306873322210
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLIEGAAR-FNY-LLNIATPIGSEPRNEYLNWA-RNQGASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i~~~~~-~g~-~v~~~~P~~~~~~~~~~~~~-~~~g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
+..+++++|-+. .++..++++.. .+. ++.+..+..- -...+.+.. ...|..+....+++++++++|+|.+-.
T Consensus 126 ~a~~l~iiGaG~-QA~~~~~a~~~v~~i~~v~v~~r~~~-~~~~f~~~~~~~~g~~v~~~~~~~~av~~aDiV~taT 200 (325)
T PRK08618 126 DAKTLCLIGTGG-QAKGQLEAVLAVRDIEKVRVYSRTFE-KAYAFAQEIQSKFNTEIYVVESADEAIEEADIIVTVT 200 (325)
T ss_pred CCCEEEEECCHH-HHHHHHHHHHHCCCCCEEEEEECCHH-HHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEEC
T ss_conf 985699975607-99999999986089668999947999-9999999998750996699589999984398899925
No 189
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=46.48 E-value=21 Score=16.39 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHH----HHHH--CCCE-EEEEECCCCHH--HHHHCCCCCCEECCCC-----C-C-CHHHHH
Q ss_conf 333210000123210799999----7530--0101-11210132006--7763012441240433-----3-2-024678
Q gi|255764473|r 74 IFLSGSEMQLGRAETIGDTAK----VLSR--YVDA-IVMRTTNHSRL--LELTEYATVPVINALT-----D-N-THPCQI 137 (306)
Q Consensus 74 ~~~~~~~ss~~kgEsl~Dt~~----~ls~--~~D~-iviR~~~~~~~--~~~~~~~~vpvINa~~-----~-~-~HPtQa 137 (306)
+||.-.+| .-.|.++.+.=+ .|+. -+|+ +|+=.|+.+.. .-+++.+.+|.-.+.- + . =-|+|
T Consensus 239 IYFarpdS-~~~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aa~Gya~~~gip~~~glikn~y~gRtFI~P~q- 316 (442)
T PRK08341 239 IYFARPDS-TINGVSVYHARYRMGVELARESPAEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSG- 316 (442)
T ss_pred EECCCCCC-CCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCC-
T ss_conf 40147863-0788689999999999986128987898996289749999999986299524300000121554438873-
Q ss_pred HHHHHHHHHH----CCCCCCCCEEEECCC---CCCCCCHHHCCCCCCEE---EEEECHHCCCCC
Q ss_conf 7655766420----013367730461045---55543101001233125---765200001321
Q gi|255764473|r 138 IADIMTFEEH----RGSVKGKLFSWSGDG---NNILHSLIEGAARFNYL---LNIATPIGSEPR 191 (306)
Q Consensus 138 L~D~~Ti~e~----~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~~---v~~~~P~~~~~~ 191 (306)
-+.- .+-+ +..++|++|.+|=|. +++....+..+...|++ +.+++|+--.|.
T Consensus 317 -R~~~-v~~Kl~~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC 378 (442)
T PRK08341 317 -RELK-VKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPC 378 (442)
T ss_pred -HHHC-EEEEEEEEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf -0021-0446501000127981499614341054299999999976998899996899857777
No 190
>PRK06608 threonine dehydratase; Provisional
Probab=46.31 E-value=17 Score=17.00 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=26.0
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 94288835789999898634754333321000012321
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAE 87 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgE 87 (306)
+.+-+|-=+=.|...|++.+|..++.+=+.+.+..|-+
T Consensus 76 vv~aSsGNhG~alA~aa~~~G~~~~I~mP~~~~~~Ki~ 113 (330)
T PRK06608 76 IVAYSTGNHGIAVAYASKLFGIKTRIYLPLNTSKVKQQ 113 (330)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 79867886699999999854986389845658899999
No 191
>PRK07660 consensus
Probab=46.10 E-value=15 Score=17.28 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.1
Q ss_pred HHHCCHHHHHHHH
Q ss_conf 4458999999999
Q gi|255764473|r 11 LSNISSSNLSCII 23 (306)
Q Consensus 11 ~~dl~~~~i~~ll 23 (306)
+.|.+.+.+..-.
T Consensus 31 l~D~~~~~l~~~~ 43 (283)
T PRK07660 31 VQDLKQEQLDRGL 43 (283)
T ss_pred EEECCHHHHHHHH
T ss_conf 9979889999999
No 192
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=45.05 E-value=19 Score=16.63 Aligned_cols=131 Identities=19% Similarity=0.289 Sum_probs=79.9
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHH--CCCE-EEEEECCCCH--HHHHHCCCC
Q ss_conf 42888357899998986347543333210000123210799999----7530--0101-1121013200--677630124
Q gi|255764473|r 51 FEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK----VLSR--YVDA-IVMRTTNHSR--LLELTEYAT 121 (306)
Q Consensus 51 F~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~----~ls~--~~D~-iviR~~~~~~--~~~~~~~~~ 121 (306)
|.++..|+-++||- +||.-.+|.+. |.++.+.=. .|+. ..++ +|+-.|+.+. ...+++.+.
T Consensus 237 ~~~~~~~~~C~fEy---------VYFARPDS~Id-g~sVy~~R~~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sG 306 (470)
T COG0034 237 VAEPPRRAPCSFEY---------VYFARPDSVID-GISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASG 306 (470)
T ss_pred CCCCCCCCCCEEEE---------EEEECCCCCCC-CEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 14788886444889---------98506742248-856999999999999875873365798349887689999999839
Q ss_pred CCEECCC-----CC-C-CHHHHHHHHHHH---HHHHCCCCCCCCEEEECCC---CCCCCCHHHCCCCCCE---EEEEECH
Q ss_conf 4124043-----33-2-024678765576---6420013367730461045---5554310100123312---5765200
Q gi|255764473|r 122 VPVINAL-----TD-N-THPCQIIADIMT---FEEHRGSVKGKLFSWSGDG---NNILHSLIEGAARFNY---LLNIATP 185 (306)
Q Consensus 122 vpvINa~-----~~-~-~HPtQaL~D~~T---i~e~~g~l~~~~i~~vGd~---~~v~hS~i~~~~~~g~---~v~~~~P 185 (306)
+|.--++ -+ . =-|||.|=-.-- +--.+.-++|++|+.|-|. +.+-+-.+..+..-|+ .+.+++|
T Consensus 307 iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP 386 (470)
T COG0034 307 IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASP 386 (470)
T ss_pred CCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 96555521023243466688678877503030370178858976999726514576699999999971887889984289
Q ss_pred HCCCCC
Q ss_conf 001321
Q gi|255764473|r 186 IGSEPR 191 (306)
Q Consensus 186 ~~~~~~ 191 (306)
+-..|.
T Consensus 387 ~i~~Pc 392 (470)
T COG0034 387 PIRYPC 392 (470)
T ss_pred CCCCCC
T ss_conf 756778
No 193
>pfam02639 DUF188 Uncharacterized BCR, YaiI/YqxD family COG1671.
Probab=43.12 E-value=21 Score=16.33 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=11.2
Q ss_pred HCCCCCCEEEEEECHHCCCCC
Q ss_conf 001233125765200001321
Q gi|255764473|r 171 EGAARFNYLLNIATPIGSEPR 191 (306)
Q Consensus 171 ~~~~~~g~~v~~~~P~~~~~~ 191 (306)
.++.+++.++.+++-....++
T Consensus 4 r~A~r~~i~v~~Van~~~~~p 24 (130)
T pfam02639 4 RAAERHGIPVTLVANQPHRLP 24 (130)
T ss_pred EHHHHHCCEEEEEECCCCCCC
T ss_conf 011343977999958980489
No 194
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=43.05 E-value=25 Score=15.83 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECC--CCHHHHHHCCCCCCEECCCC
Q ss_conf 5789999898634754333321000012321079999975-3001011121013--20067763012441240433
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTN--HSRLLELTEYATVPVINALT 129 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~--~~~~~~~~~~~~vpvINa~~ 129 (306)
+---..|.++++.|-+++..+..... |.-+...+.+ +..+|++++-... ...+..+.+...+||+-.+.
T Consensus 18 ~i~~gie~~a~~~Gy~~ll~~t~~~~----~~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~~~~~iPvV~~~~ 89 (281)
T pfam00532 18 DLVKGITKAAKDHGFDVFLLAVGDGE----DTLTNAIDLLLASGADGIIITTPAPSGDDITAKAEGYGIPVIAADD 89 (281)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999999839989999799998----9999999999965999899936889849999999857997899924
No 195
>KOG0953 consensus
Probab=42.81 E-value=14 Score=17.59 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.3
Q ss_pred CCCCHHHHHHHH
Q ss_conf 888357899998
Q gi|255764473|r 53 KPSTRTRVSFEV 64 (306)
Q Consensus 53 e~StRTR~SFe~ 64 (306)
..+.++-.||-.
T Consensus 108 ~~~~~~~~sf~~ 119 (700)
T KOG0953 108 PLFPAAFISFRI 119 (700)
T ss_pred CCCHHHHHHHHH
T ss_conf 110556678998
No 196
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=42.80 E-value=25 Score=15.81 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=64.2
Q ss_pred HHHHH-HHHHCCCEEEEEEC----------CC--CHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 99999-75300101112101----------32--0067763012441240433320246787655766420013367730
Q gi|255764473|r 90 GDTAK-VLSRYVDAIVMRTT----------NH--SRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLF 156 (306)
Q Consensus 90 ~Dt~~-~ls~~~D~iviR~~----------~~--~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i 156 (306)
...+. ++...+|++|||.. ++ -.|.+|..-.+||||-+|+..+ +-+| . |.+. | =-+.-|
T Consensus 146 ~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~E~LnLk~fi~eLDvPVv~Ggv~~Y--~~AL-h---LMRt-G-AagvlV 217 (376)
T TIGR01304 146 SKLAPVVVEAGADLLVIQGTVVSAEHVSSESGEPLNLKKFIQELDVPVVAGGVVTY--TTAL-H---LMRT-G-AAGVLV 217 (376)
T ss_pred HHHHHHHHHHCCCEEEEHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEECCCCCH--HHHH-H---HHHH-C-CEEEEE
T ss_conf 78889999717300420012320100468888721488897548988788385308--8999-9---8630-1-137886
Q ss_pred EEECCCCCCCCCHHHCCCCCCEEEEEECH--HCCCCCCCCHHHHHCCCC---------CCCCCCCHHHHC-CCCCCCCCC
Q ss_conf 46104555543101001233125765200--001321000024320133---------222136646630-687332221
Q gi|255764473|r 157 SWSGDGNNILHSLIEGAARFNYLLNIATP--IGSEPRNEYLNWARNQGA---------SVALFHDAVQAV-KGAHCVFTD 224 (306)
Q Consensus 157 ~~vGd~~~v~hS~i~~~~~~g~~v~~~~P--~~~~~~~~~~~~~~~~g~---------~i~~~~d~~eal-~~aD~V~~~ 224 (306)
.|.|.....-.+.+ ||+.|--.+= ...--+.+|+ ++.|. .|..+=|+.+++ =+||.|+.-
T Consensus 218 GfgG~ga~~T~~~v-----LG~~VpmATAiAD~AAARrDYL---dEtGGRYVHviADG~i~~sGd~~KAIACGADAV~lG 289 (376)
T TIGR01304 218 GFGGPGAATTTREV-----LGIEVPMATAIADVAAARRDYL---DETGGRYVHVIADGGIETSGDLAKAIACGADAVVLG 289 (376)
T ss_pred CCCCCCCCCCCCCC-----CEECCCCHHHHHHHHHHHHHHH---HCCCCCEEEEEEECCCCCCCCHHHHEECCCCHHHHC
T ss_conf 45788734246653-----4210672678999997301133---306893377886287055463001001377602007
Q ss_pred C
Q ss_conf 0
Q gi|255764473|r 225 T 225 (306)
Q Consensus 225 ~ 225 (306)
.
T Consensus 290 S 290 (376)
T TIGR01304 290 S 290 (376)
T ss_pred C
T ss_conf 8
No 197
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=42.61 E-value=15 Score=17.34 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=38.7
Q ss_pred CEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCC--CC----HHHHHC-----------CCCCCCCCCCHHHHCCC
Q ss_conf 30461045555431010012331257652000013210--00----024320-----------13322213664663068
Q gi|255764473|r 155 LFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRN--EY----LNWARN-----------QGASVALFHDAVQAVKG 217 (306)
Q Consensus 155 ~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~--~~----~~~~~~-----------~g~~i~~~~d~~eal~~ 217 (306)
||+++|- +.+..++...++.-|++|.+..+..-.... .. ++.... .-..++...|+.+ +.+
T Consensus 1 kV~ViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~ 78 (180)
T pfam02737 1 KVAVIGA-GTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLAD-AVD 78 (180)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH-HCC
T ss_conf 9899997-88999999999967993999979989999999999998999997256756769999852410588999-758
Q ss_pred CCCCCC
Q ss_conf 733222
Q gi|255764473|r 218 AHCVFT 223 (306)
Q Consensus 218 aD~V~~ 223 (306)
+|+|.-
T Consensus 79 adlViE 84 (180)
T pfam02737 79 ADLVIE 84 (180)
T ss_pred CCEEEE
T ss_conf 999999
No 198
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=42.25 E-value=26 Score=15.75 Aligned_cols=114 Identities=23% Similarity=0.379 Sum_probs=58.4
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCC---C-------------CCCCCCCCEEEEEECCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 589999999999999999665236---6-------------6544379879999428883578999989863-4754333
Q gi|255764473|r 13 NISSSNLSCIIEVAKKIKNSSENI---F-------------ENKPLSGKVLAMIFEKPSTRTRVSFEVAMKH-LGGDTIF 75 (306)
Q Consensus 13 dl~~~~i~~ll~~A~~~k~~~~~~---~-------------~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~-LG~~~~~ 75 (306)
-|+++.+..+.+-.+.+...+... . ...|+ -+|+.+|+- |--+.-..|+.- -.|+++.
T Consensus 65 ~L~~~ri~~~~~~l~~ia~l~DPvG~v~~~~~~~~Gl~i~~~~vPl--GVIgiIyEs---rPnvtv~~aalalksGNavI 139 (406)
T cd07079 65 LLTPERIEAMAEGLRQVAALPDPVGEVLRGWTLPNGLQIEKVRVPL--GVIGIIYES---RPNVTVDAAALCLKSGNAVI 139 (406)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC--EEEEEEECC---CCCHHHHHHHHHHHHCCEEE
T ss_conf 0899999999999999981899666403330047884478987551--899998279---97326888899998478699
Q ss_pred CCCCC--------------------------CCCCCCCCHHHHHHHH--HHCCCEEEEEECCCCHHHHHHCCCCCCEECC
Q ss_conf 32100--------------------------0012321079999975--3001011121013200677630124412404
Q gi|255764473|r 76 LSGSE--------------------------MQLGRAETIGDTAKVL--SRYVDAIVMRTTNHSRLLELTEYATVPVINA 127 (306)
Q Consensus 76 ~~~~~--------------------------ss~~kgEsl~Dt~~~l--s~~~D~iviR~~~~~~~~~~~~~~~vpvINa 127 (306)
+.++. .++-.+.+-+.+...+ ..++|+++.|+. ........+.+.+|||-.
T Consensus 140 Lk~g~ea~~s~~~l~~~i~~al~~~glP~~~v~~v~~~~~~~v~~ll~~~~~IdliiprG~-~~lv~~v~~~a~vPvl~~ 218 (406)
T cd07079 140 LRGGSEALHSNRALVEIIQEALEEAGLPEDAVQLIPDTDREAVQELLKLDDYIDLIIPRGG-AGLIRFVVENATIPVIKH 218 (406)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHCCCCCCEEEECCC-HHHHHHHHHHCCCCEEEC
T ss_conf 8065566558999999999999873969789798268973467888704776316861586-689999998666978944
Q ss_pred CCCCC
Q ss_conf 33320
Q gi|255764473|r 128 LTDNT 132 (306)
Q Consensus 128 ~~~~~ 132 (306)
|.|..
T Consensus 219 ~~G~~ 223 (406)
T cd07079 219 GDGNC 223 (406)
T ss_pred CCCCC
T ss_conf 89975
No 199
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=41.89 E-value=21 Score=16.41 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCC-CCCCCCCCC----CCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 7899998986347-543333210----00012321079999975300101112
Q gi|255764473|r 58 TRVSFEVAMKHLG-GDTIFLSGS----EMQLGRAETIGDTAKVLSRYVDAIVM 105 (306)
Q Consensus 58 TR~SFe~A~~~LG-~~~~~~~~~----~ss~~kgEsl~Dt~~~ls~~~D~ivi 105 (306)
+|..||+|.+|=+ .++.-+|.. .|.++ .|+++++++ +.|.|+=.-
T Consensus 174 aR~AFe~A~kr~~P~~vTSvDKANVL~sS~LW-R~~V~e~~~--~eYPdv~L~ 223 (370)
T TIGR00169 174 ARVAFEMARKRRKPLKVTSVDKANVLESSRLW-RKTVEEIAK--EEYPDVELE 223 (370)
T ss_pred HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH-HHHHHHHHH--CCCCCEEEC
T ss_conf 99999999854889853210012045543789-999999984--688805730
No 200
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.80 E-value=11 Score=18.10 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=11.0
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|+..-+...|..++.++|-
T Consensus 169 ~~la~e~~~~gIrvN~I~PG 188 (250)
T PRK12825 169 KALARELAERGIRVNAVAPG 188 (250)
T ss_pred HHHHHHHHHHCEEEEEEEEC
T ss_conf 99999860429299999728
No 201
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.74 E-value=20 Score=16.46 Aligned_cols=166 Identities=10% Similarity=0.144 Sum_probs=69.2
Q ss_pred HHCCHHHHHHHHHHHHH--HHHHHHCCCCC-CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45899999999999999--99665236665-4437987999942888357899998986347543333210000123210
Q gi|255764473|r 12 SNISSSNLSCIIEVAKK--IKNSSENIFEN-KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAET 88 (306)
Q Consensus 12 ~dl~~~~i~~ll~~A~~--~k~~~~~~~~~-~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEs 88 (306)
.+++++-++.++.+--. +.+....+.+. .+-. +.|+.+ -..-+---=|.--...-|-.|..++.++ -.+
T Consensus 64 ~gv~pdliEdilRrimreSy~~e~~~~~~~~~~~~-~~i~II--GG~G~mG~~F~~~f~~sGy~V~ild~~d-----w~~ 135 (374)
T PRK11199 64 LGVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDL-RPVVIV--GGKGQLGRLFAKMLTLSGYQVRILEKDD-----WDR 135 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEEE--ECCCCHHHHHHHHHHHCCCEEEEECCCC-----CCC
T ss_conf 49886899999999999999888875022028998-717998--0798277999999996798799616444-----534
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCC---EECCCCC-CCHHHHHHHHHHH-----HHHHCC----CCCCCC
Q ss_conf 79999975300101112101320067763012441---2404333-2024678765576-----642001----336773
Q gi|255764473|r 89 IGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVP---VINALTD-NTHPCQIIADIMT-----FEEHRG----SVKGKL 155 (306)
Q Consensus 89 l~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vp---vINa~~~-~~HPtQaL~D~~T-----i~e~~g----~l~~~~ 155 (306)
..+ +-.-.|++++=.|=+.+..-+.+-...| ++==.+. ..-|.++++.... ++--|| .+.|..
T Consensus 136 ~~~----~~~~advViVsVPI~~T~~VI~~l~~l~~~~lL~DiTSvK~~Pl~aMl~~h~gpV~GlHPMFGP~v~sl~~Qv 211 (374)
T PRK11199 136 ADD----ILADAGMVIVSVPIHLTEEVIEKLPPLPEDCILVDLTSVKNGPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQV 211 (374)
T ss_pred HHH----HHHCCCEEEEEECHHHHHHHHHHCCCCCCCCEEEECHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 898----8717998999814588999998577899986898610042789999998568985022778799964447876
Q ss_pred EEEECCCCCCCCCHH-HCCCCCCEEEEEECHHCCC
Q ss_conf 046104555543101-0012331257652000013
Q gi|255764473|r 156 FSWSGDGNNILHSLI-EGAARFNYLLNIATPIGSE 189 (306)
Q Consensus 156 i~~vGd~~~v~hS~i-~~~~~~g~~v~~~~P~~~~ 189 (306)
|.+|...+.-...|+ +.+...|+.+..+.|....
T Consensus 212 VV~c~gr~~e~~~wl~~~~~~~Ga~l~~~~~~eHD 246 (374)
T PRK11199 212 VVVCDGRQPEAYQWLLEQIQIWGARLHRISAVEHD 246 (374)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCEEEECCHHHHH
T ss_conf 99889998377899999999848789986888888
No 202
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=41.63 E-value=12 Score=18.05 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCCEEEECCCCCCCCCHHHCCCC-CCE-EEEEECHHCCCCCCCCHHH-HHCCCCCCCCCCCHHHHCCCCCCCCCCCE
Q ss_conf 77304610455554310100123-312-5765200001321000024-32013322213664663068733222100
Q gi|255764473|r 153 GKLFSWSGDGNNILHSLIEGAAR-FNY-LLNIATPIGSEPRNEYLNW-ARNQGASVALFHDAVQAVKGAHCVFTDTW 226 (306)
Q Consensus 153 ~~~i~~vGd~~~v~hS~i~~~~~-~g~-~v~~~~P~~~~~~~~~~~~-~~~~g~~i~~~~d~~eal~~aD~V~~~~~ 226 (306)
...++++|-+. -++..++++.. ++. ++.+..+.. .-...+.+. .+..|..+....+.+++++++|+|.+-..
T Consensus 118 ~~~l~iiG~G~-QA~~~~~a~~~v~~i~~v~v~~r~~-~~a~~f~~~~~~~~~~~v~~~~~~e~av~~aDiI~taT~ 192 (302)
T PRK06407 118 VENFTIIGSGF-QAETQLEGMASVYNPKRIRVYSRNF-DHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITN 192 (302)
T ss_pred CCEEEEEEEHH-HHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECC
T ss_conf 87899996659-9999999999740773899980888-999999999864409957994899999834999999418
No 203
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=41.38 E-value=23 Score=16.07 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECC---CCHHHHHHCCCCCC---EECCCCC--C-CHHH----HHHHHHHHHH----HH-
Q ss_conf 210799999753001011121013---20067763012441---2404333--2-0246----7876557664----20-
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTN---HSRLLELTEYATVP---VINALTD--N-THPC----QIIADIMTFE----EH- 147 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~---~~~~~~~~~~~~vp---vINa~~~--~-~HPt----QaL~D~~Ti~----e~- 147 (306)
--|+++ .|-++-..|+||.|+.. ...-..+|-+++|| |||+-|- . +=|- |.|.|..+=+ ..
T Consensus 201 QhSVKe-LRs~Gi~PD~i~cRs~~~l~~~~k~KiAlFCdV~~~aVI~~~Da~sIY~vPl~L~~egl~~~~~~rl~L~~~~ 279 (571)
T TIGR00337 201 QHSVKE-LRSLGIQPDIIICRSSEPLDKSLKKKIALFCDVEEEAVINAEDASSIYEVPLLLKKEGLDDYLCRRLNLNEKP 279 (571)
T ss_pred HHHHHH-HHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCC
T ss_conf 278999-9860988868998188768977764521005889732578655524011352100043357999984378777
Q ss_pred -------CC----------------CCCCCCEEEECCCCC-------CCCCHHHCCCCCCEEEE
Q ss_conf -------01----------------336773046104555-------54310100123312576
Q gi|255764473|r 148 -------RG----------------SVKGKLFSWSGDGNN-------ILHSLIEGAARFNYLLN 181 (306)
Q Consensus 148 -------~g----------------~l~~~~i~~vGd~~~-------v~hS~i~~~~~~g~~v~ 181 (306)
+| ..+..+|++||.+-+ |.-||.-++..+...|.
T Consensus 280 ~~ee~k~rG~~~Ls~W~~~v~~~~~~~~~v~Ig~VGKY~eL~DaY~Sv~EAL~Hag~~~d~~v~ 343 (571)
T TIGR00337 280 LIEEEKERGEADLSEWEELVEKLINPKEEVTIGLVGKYVELKDAYLSVIEALKHAGAKLDTKVN 343 (571)
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 4201221375548999999986305525167989740025135678899999876776374256
No 204
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.22 E-value=27 Score=15.65 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECC
Q ss_conf 8999989863475433332-10000123210799999753001011121013200---677630124412404
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLS-GSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSR---LLELTEYATVPVINA 127 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~-~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa 127 (306)
+-..+.+++.+|.++...- ..+.+..+-- .+.-..++..+|+|++-.-+... ..+.++-..||||.-
T Consensus 18 ~~g~e~~a~e~g~~v~~~~~da~~D~~~Q~--~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~agIPVI~~ 88 (303)
T cd01539 18 RKNLEDIQKENGGKVEFTFYDAKNNQSTQN--EQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHH--HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999859957999707878999999--99999997599999994687334899999999669849998
No 205
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.08 E-value=26 Score=15.78 Aligned_cols=187 Identities=17% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC------------CCCCCCHHHHHHHH-HHCCCEEE-EEE
Q ss_conf 37987999942888357899998986347543333210000------------12321079999975-30010111-210
Q gi|255764473|r 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQ------------LGRAETIGDTAKVL-SRYVDAIV-MRT 107 (306)
Q Consensus 42 l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss------------~~kgEsl~Dt~~~l-s~~~D~iv-iR~ 107 (306)
-.++.|+.+=-=|+ =+|..---.++|-.|..|.+.+-- +- .|-+..-+..+ +..+.... ...
T Consensus 304 ~~~~kVAVIGsGPA---GLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLP-K~IV~~EI~~l~~lGV~f~~n~~V 379 (944)
T PRK12779 304 AVKPPIAVVGSGPS---GLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLP-NQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCCCEEEECCCHH---HHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCC-HHHHHHHHHHHHHCCEEEEECCEE
T ss_conf 67986799885768---99999999977993399944787885589558766687-899999999999678399978564
Q ss_pred CCCCHHHHHH-C-CCCCCEEC-CCCC--CCHHHHHHH------HHHH----HHHH---C----CCCCCCCEEEECCCCCC
Q ss_conf 1320067763-0-12441240-4333--202467876------5576----6420---0----13367730461045555
Q gi|255764473|r 108 TNHSRLLELT-E-YATVPVIN-ALTD--NTHPCQIIA------DIMT----FEEH---R----GSVKGKLFSWSGDGNNI 165 (306)
Q Consensus 108 ~~~~~~~~~~-~-~~~vpvIN-a~~~--~~HPtQaL~------D~~T----i~e~---~----g~l~~~~i~~vGd~~~v 165 (306)
..+..+.++. + |..|.|=. |+-. ..=|-.-|. |++| ++-. + ....|++|+.+| ++||
T Consensus 380 Gk~~tl~eL~~eGydAVfIg~GAg~p~~l~IpGE~L~GV~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIG-GGNt 458 (944)
T PRK12779 380 GKTATLEDLKAEGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDRYETPLPEVKGKNVFVIG-GGNT 458 (944)
T ss_pred CCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC-CCHH
T ss_conf 776889999768999899974788875689888777682568999998643123566456864267898799989-9566
Q ss_pred CCCHHHCCCCCCEEEEEECHHC--CCCC-CCCHHHHHCCCCCCCCCCCHHHHCCCCC--CCCCCCEEEC--CCCC
Q ss_conf 4310100123312576520000--1321-0000243201332221366466306873--3222100000--0220
Q gi|255764473|r 166 LHSLIEGAARFNYLLNIATPIG--SEPR-NEYLNWARNQGASVALFHDAVQAVKGAH--CVFTDTWISM--NQEF 233 (306)
Q Consensus 166 ~hS~i~~~~~~g~~v~~~~P~~--~~~~-~~~~~~~~~~g~~i~~~~d~~eal~~aD--~V~~~~~~~~--~~~~ 233 (306)
+---+..+.|+|.+++++.-.. ..|. .+-+..++..|..+..-.++.+.+-+.. +|-..+.+.| ++++
T Consensus 459 AMDaARTA~RlGA~VtiVYRRt~~EMPAr~EEi~hA~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPD 533 (944)
T PRK12779 459 AMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPD 533 (944)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHHHHHHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCC
T ss_conf 999999988529878999845876589889999889857928998149665524468977889999985358988
No 206
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=40.96 E-value=27 Score=15.63 Aligned_cols=128 Identities=13% Similarity=0.214 Sum_probs=60.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCCHHHHHHHH-HHC-CCEEEEEECCC----CHHHH
Q ss_conf 99994288835789999898634754333-----321000012321079999975-300-10111210132----00677
Q gi|255764473|r 47 LAMIFEKPSTRTRVSFEVAMKHLGGDTIF-----LSGSEMQLGRAETIGDTAKVL-SRY-VDAIVMRTTNH----SRLLE 115 (306)
Q Consensus 47 i~~lF~e~StRTR~SFe~A~~~LG~~~~~-----~~~~~ss~~kgEsl~Dt~~~l-s~~-~D~iviR~~~~----~~~~~ 115 (306)
|+.+|.+.+.--...|..|+.+.--..-. +.+..-.+....++ .+.+.+ ..+ -++..|=+|.+ ..+..
T Consensus 2 IG~iF~~~~~~~~~AF~~Av~~vN~~~~~~~~~~L~~~~~~v~~~dsf-~~~~~~C~~l~~gV~AI~Gp~s~~~~~~v~s 80 (382)
T cd06380 2 IGGLFDVDEDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSF-ALTNAICSQLSRGVFAIFGSYDKSSVNTLTS 80 (382)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHH-HHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf 466606998789999999999972687656771688898854778879-9999999998649589997785647999999
Q ss_pred HHCCCCCCEEC--C-CCC---------CCHHH--HHHHHHHHHHHHCCCCCCCCEEEECCCC-CCCCCHHHCCCCCCEE
Q ss_conf 63012441240--4-333---------20246--7876557664200133677304610455-5543101001233125
Q gi|255764473|r 116 LTEYATVPVIN--A-LTD---------NTHPC--QIIADIMTFEEHRGSVKGKLFSWSGDGN-NILHSLIEGAARFNYL 179 (306)
Q Consensus 116 ~~~~~~vpvIN--a-~~~---------~~HPt--QaL~D~~Ti~e~~g~l~~~~i~~vGd~~-~v~hS~i~~~~~~g~~ 179 (306)
++...+||.|. + .+. .-||+ ||++|+..-..+ +...+.|-.|.+ +....+..++...+..
T Consensus 81 i~~~l~IP~I~~~~~~~~~~~~~~~~~~~~P~~~~Ai~dlV~~~~W----~~v~~iYd~d~gl~~lq~l~~~l~~~~~~ 155 (382)
T cd06380 81 YSDALHVPFITPSFPTNDLDDGNQFVLQMRPSLIQALVDLIEHYGW----RKVVYLYDSDRGLLRLQQLLDYLREKDNK 155 (382)
T ss_pred HHHCCCCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC----CEEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 9734689768601588976666622699278779999999997799----48999995807788999999998644995
No 207
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.96 E-value=17 Score=16.90 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHC--CCEEEEEECCCCHHHHHHCCC
Q ss_conf 999975300--101112101320067763012
Q gi|255764473|r 91 DTAKVLSRY--VDAIVMRTTNHSRLLELTEYA 120 (306)
Q Consensus 91 Dt~~~ls~~--~D~iviR~~~~~~~~~~~~~~ 120 (306)
+..+-++.+ .++|+.=..+.-.+.++++..
T Consensus 100 ~lf~~l~~~~~~~~IlaSNTSsl~is~la~~~ 131 (292)
T PRK07530 100 KIFAQLCPVLKPEAILASNTSSISITRLASST 131 (292)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHC
T ss_conf 89999986269884898758887505666643
No 208
>PRK09354 recA recombinase A; Provisional
Probab=40.92 E-value=27 Score=15.62 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=44.1
Q ss_pred CCCEEEEEECCCCCHHHHHHH--HHHHHCCCCCCCCCCCC-------------------CCCCCCCCHHHHHHHH--HHC
Q ss_conf 798799994288835789999--89863475433332100-------------------0012321079999975--300
Q gi|255764473|r 43 SGKVLAMIFEKPSTRTRVSFE--VAMKHLGGDTIFLSGSE-------------------MQLGRAETIGDTAKVL--SRY 99 (306)
Q Consensus 43 ~gk~i~~lF~e~StRTR~SFe--~A~~~LG~~~~~~~~~~-------------------ss~~kgEsl~Dt~~~l--s~~ 99 (306)
+||.+-..=.|.|--|-++.. ..+++.|+.+.++|..+ ++...+|-.-+++..| +.-
T Consensus 59 ~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~ 138 (350)
T PRK09354 59 KGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGA 138 (350)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 87089998898777999999999999975994799960002798899984977157178568679999999999985488
Q ss_pred CCEEEEE
Q ss_conf 1011121
Q gi|255764473|r 100 VDAIVMR 106 (306)
Q Consensus 100 ~D~iviR 106 (306)
+|+||+-
T Consensus 139 vd~IVvD 145 (350)
T PRK09354 139 VDLIVVD 145 (350)
T ss_pred CCEEEEE
T ss_conf 4189982
No 209
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.81 E-value=27 Score=15.61 Aligned_cols=11 Identities=0% Similarity=-0.239 Sum_probs=4.7
Q ss_pred HHHCCCCCCEE
Q ss_conf 01001233125
Q gi|255764473|r 169 LIEGAARFNYL 179 (306)
Q Consensus 169 ~i~~~~~~g~~ 179 (306)
+-..+.+||.+
T Consensus 210 f~Yfa~~ygL~ 220 (308)
T PRK09545 210 YGYFEKHYGLT 220 (308)
T ss_pred HHHHHHHCCCE
T ss_conf 79999986993
No 210
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=40.34 E-value=28 Score=15.56 Aligned_cols=146 Identities=10% Similarity=0.088 Sum_probs=74.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEECCCCC----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 589999999999999999665236665-44379879999428883----5789999898634754333321000012321
Q gi|255764473|r 13 NISSSNLSCIIEVAKKIKNSSENIFEN-KPLSGKVLAMIFEKPST----RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAE 87 (306)
Q Consensus 13 dl~~~~i~~ll~~A~~~k~~~~~~~~~-~~l~gk~i~~lF~e~St----RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgE 87 (306)
..+++.-..+++.|+++.-.+...... ..-+.++|++++...+. +.-...+.++.+.|.+++...... ..|
T Consensus 24 ~Vs~~tr~rV~~aa~elgY~pn~~Ar~L~~~~s~~Igviv~~~~~~f~~~i~~~i~~~~~~~gy~~~l~~~~~----~~~ 99 (327)
T PRK10423 24 FVSEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEG----DEQ 99 (327)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC----CHH
T ss_conf 9999999999999998299868888877537876799997366551267889999999998599899982689----879
Q ss_pred CHHHHHHHH-HHCCCEEEEEECC-C-CHHHHHHCCCCCCEECCCCC-CCHHHHHHH-HH----HHHHHHCCCCCCCCEEE
Q ss_conf 079999975-3001011121013-2-00677630124412404333-202467876-55----76642001336773046
Q gi|255764473|r 88 TIGDTAKVL-SRYVDAIVMRTTN-H-SRLLELTEYATVPVINALTD-NTHPCQIIA-DI----MTFEEHRGSVKGKLFSW 158 (306)
Q Consensus 88 sl~Dt~~~l-s~~~D~iviR~~~-~-~~~~~~~~~~~vpvINa~~~-~~HPtQaL~-D~----~Ti~e~~g~l~~~~i~~ 158 (306)
........+ +..+|++++=... + .....+.++..+|++-.... ...++.... |- ...-++.-..--.+|++
T Consensus 100 ~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iP~V~~d~~~~~~~~~~v~~d~~~~~~~a~~~L~~~Ghr~I~~ 179 (327)
T PRK10423 100 RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIAC 179 (327)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999995598769997477776289999727998689963777778888898778999999999999759974999
Q ss_pred ECCC
Q ss_conf 1045
Q gi|255764473|r 159 SGDG 162 (306)
Q Consensus 159 vGd~ 162 (306)
+|..
T Consensus 180 i~~~ 183 (327)
T PRK10423 180 ITGP 183 (327)
T ss_pred ECCC
T ss_conf 6688
No 211
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=40.24 E-value=28 Score=15.55 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHH-CCCEEEEEECCCCHHHHH-------HCC---CCC
Q ss_conf 835789999898634754333321000012-32107999997530-010111210132006776-------301---244
Q gi|255764473|r 55 STRTRVSFEVAMKHLGGDTIFLSGSEMQLG-RAETIGDTAKVLSR-YVDAIVMRTTNHSRLLEL-------TEY---ATV 122 (306)
Q Consensus 55 StRTR~SFe~A~~~LG~~~~~~~~~~ss~~-kgEsl~Dt~~~ls~-~~D~iviR~~~~~~~~~~-------~~~---~~v 122 (306)
-.+.-.=++.+.+.||.+..|......... ..|.+.+....+.. .+.++-+=.|--..+..+ ++. .+.
T Consensus 17 hSlSP~iHn~~~~~lgl~~~Y~~~d~~~~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~~~~~~d~l~~~A~~igAvNT 96 (284)
T PRK12549 17 ASLTPAMHEAEGDAQGLRYVYRLIDLDALGLSADALPELLDAAERMGFNGLNITHPCKQAVIPLLDELSDDARALGAVNT 96 (284)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 03259999999998799809997532121399789999999987689988998117499999997052378998565214
Q ss_pred CEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCCHHHHHC-
Q ss_conf 12404333202467876557664200133677304610455554310100123312-5765200001321000024320-
Q gi|255764473|r 123 PVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEYLNWARN- 200 (306)
Q Consensus 123 pvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~- 200 (306)
-++.-|.-..|-|-...=...+.+....+++.++.++|-++ .+++.+.++...|+ ++.++.-..-.. ..+.+....
T Consensus 97 i~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~vlilGaGG-aa~ai~~al~~~g~~~i~I~nR~~~r~-~~l~~~l~~~ 174 (284)
T PRK12549 97 VVFRDGRRIGHNTDWSGFAEGFRRGLPDASLERVVQLGAGG-AGAAVAHALLTLGVERLTLFDVDPARA-QALADELNAR 174 (284)
T ss_pred EEEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHH
T ss_conf 89759989998066688999999746453557189965661-689999999976999899997988999-9999999865
Q ss_pred -CCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf -13322213664663068733222
Q gi|255764473|r 201 -QGASVALFHDAVQAVKGAHCVFT 223 (306)
Q Consensus 201 -~g~~i~~~~d~~eal~~aD~V~~ 223 (306)
....+....++.+.+.++|+|+-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~d~iIN 198 (284)
T PRK12549 175 FPAARVTAGSDLAAALAAADGLVH 198 (284)
T ss_pred CCCCEEEECHHHHHHHHHCCEEEE
T ss_conf 798637641676765421382665
No 212
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=40.23 E-value=28 Score=15.55 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=52.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHCCCEEEEEECCC---------
Q ss_conf 9999428883578999989863475433332100001232-------107999997530010111210132---------
Q gi|255764473|r 47 LAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRA-------ETIGDTAKVLSRYVDAIVMRTTNH--------- 110 (306)
Q Consensus 47 i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kg-------Esl~Dt~~~ls~~~D~iviR~~~~--------- 110 (306)
++++=--.|--|-+|.+. |+++||.++..| ++++.+| =|.++...+-= -.+=+|.+.+
T Consensus 6 i~I~GPTAsGKT~lai~L-Ak~~~~eIIs~D--SmQvYr~mdIGTAKps~~e~~~vpH---hliDi~~p~e~ysa~~f~~ 79 (308)
T COG0324 6 IVIAGPTASGKTALAIAL-AKRLGGEIISLD--SMQVYRGLDIGTAKPSLEELAGVPH---HLIDIRDPTESYSAAEFQR 79 (308)
T ss_pred EEEECCCCCCHHHHHHHH-HHHCCCCEEECC--HHHHCCCCCCCCCCCCHHHHCCCCE---EEECCCCCCCCCCHHHHHH
T ss_conf 999898875778999999-998299289302--3553188863079999999858997---8754568322554999999
Q ss_pred ---CHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHH
Q ss_conf ---006776301244124043332024678765576
Q gi|255764473|r 111 ---SRLLELTEYATVPVINALTDNTHPCQIIADIMT 143 (306)
Q Consensus 111 ---~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~T 143 (306)
..+.++...-.+|||=+|++.+ .|+|++=+.
T Consensus 80 ~a~~~i~~i~~rgk~pIlVGGTglY--~~aL~~g~~ 113 (308)
T COG0324 80 DALAAIDDILARGKLPILVGGTGLY--LKALLEGLS 113 (308)
T ss_pred HHHHHHHHHHHCCCCCEEECCHHHH--HHHHHCCCC
T ss_conf 9999999999689987997667999--999973876
No 213
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=40.08 E-value=28 Score=15.54 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHH---HHHHCCCCCCEECCCCC
Q ss_conf 899998986347543333210-0001232107999997530010111210132006---77630124412404333
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGS-EMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRL---LELTEYATVPVINALTD 130 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~-~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~---~~~~~~~~vpvINa~~~ 130 (306)
.-.+|.+++++|.++..+... .....+--+.-+ ..++..+|+|++-..+...+ .+-+....+|||.-.++
T Consensus 18 ~~g~e~~a~~~G~~v~v~~~~~~~d~~~q~~~i~--~~i~~~vdgii~~p~~~~~~~~~~~~a~~~gIpvv~~d~~ 91 (275)
T cd06320 18 KEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAE--NMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH--HHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999997499899996899758999999999--9997499879876788065699999998679909992688
No 214
>PRK10116 universal stress protein UspC; Provisional
Probab=39.55 E-value=29 Score=15.49 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887717844589999999999999999665236665443798799994288835789999898634754333321000
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM 81 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s 81 (306)
|+| ||+|=--|++++ -..+++.|..+.+..... + ++.-+=.+|..-+ .++ +
T Consensus 1 M~Y-khILVAvDlS~~-S~~~i~kA~~lA~~~~Ak-----l---slihV~~~~~~y~---------~~~------~---- 51 (142)
T PRK10116 1 MSY-SNILVAVAVTPE-SQQLLAKAVSIARPVNGK-----I---SLITLASDPEMYN---------QFA------A---- 51 (142)
T ss_pred CCC-CEEEEEECCCHH-HHHHHHHHHHHHHHCCCE-----E---EEEEEECCHHHHH---------HCC------C----
T ss_conf 998-689999418850-699999999999981998-----9---9999935766652---------102------2----
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 01232107999997530010111210132006776301244124043332024678765576642001336773046104
Q gi|255764473|r 82 QLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 82 s~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
.-+.|....+ +-.....+.+++...++|+-+-.-....|.+.+.+. ..|..-+ +.+||.
T Consensus 52 -----~~~~d~~~~~---------~e~a~~~L~~l~~~~~~pi~~~~v~~G~~~~~I~~~--a~e~~~D-----LIV~G~ 110 (142)
T PRK10116 52 -----PMLEDLRSVM---------QEETQSFLDELIQKADYPIEKTFIAYGELSEHILEV--CRKHHFD-----LVICGN 110 (142)
T ss_pred -----HHHHHHHHHH---------HHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHH--HHHHCCC-----EEEEEC
T ss_conf -----1378899999---------999999999999874998158999965889999999--9996999-----999905
Q ss_pred CCC
Q ss_conf 555
Q gi|255764473|r 162 GNN 164 (306)
Q Consensus 162 ~~~ 164 (306)
+++
T Consensus 111 Hg~ 113 (142)
T PRK10116 111 HNH 113 (142)
T ss_pred CCC
T ss_conf 985
No 215
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=39.48 E-value=16 Score=17.05 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=30.3
Q ss_pred HCCCCCCEECCCC---C-CCHHH------HHHHHHHHHHHHCCCC-C--CCCEEEECCCCCCCCCHH
Q ss_conf 3012441240433---3-20246------7876557664200133-6--773046104555543101
Q gi|255764473|r 117 TEYATVPVINALT---D-NTHPC------QIIADIMTFEEHRGSV-K--GKLFSWSGDGNNILHSLI 170 (306)
Q Consensus 117 ~~~~~vpvINa~~---~-~~HPt------QaL~D~~Ti~e~~g~l-~--~~~i~~vGd~~~v~hS~i 170 (306)
+++.++-|||+=- + ..||| |-+.+++--.+ +.+ . ++.|.||||.| |+|.=+
T Consensus 106 a~f~~f~v~n~YvPNg~~~~~~~rl~Yk~~~w~~~~~~~~--~~l~~~~~~pv~~cGD~N-vAh~ei 169 (279)
T TIGR00633 106 AEFDGFYVVNVYVPNGGARGLETRLEYKLDFWEALLQYYL--KELDASDGKPVIICGDLN-VAHTEI 169 (279)
T ss_pred EECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHCCCCCEEEECCCC-CCCCCC
T ss_conf 0105479998776686113654462788899999999999--998617999799984778-897711
No 216
>PRK09982 universal stress protein UspD; Provisional
Probab=39.43 E-value=29 Score=15.47 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 9888771784458999999999999999966
Q gi|255764473|r 2 MTYPKHFADLSNISSSNLSCIIEVAKKIKNS 32 (306)
Q Consensus 2 m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~ 32 (306)
|+| ||+|=--|+|++- ..|++.|..+.+.
T Consensus 1 M~Y-kHILVAVdLs~eS-~~Li~KAv~lAk~ 29 (142)
T PRK09982 1 MAY-KHIGVAISGNEED-ALLVNKALELARH 29 (142)
T ss_pred CCC-CEEEEEEECCHHH-HHHHHHHHHHHHH
T ss_conf 985-1799998558416-9999999999876
No 217
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=38.78 E-value=25 Score=15.82 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCEEEECCCCCCCCCHHHCCCCC-CEEEEEEC-HHCC-CCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 73046104555543101001233-12576520-0001-3210000243201332221366466306873322
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGAARF-NYLLNIAT-PIGS-EPRNEYLNWARNQGASVALFHDAVQAVKGAHCVF 222 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~~~~-g~~v~~~~-P~~~-~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~ 222 (306)
.||+++|-.+|+.+..+.+.... ++++.-.. .... ....+.-..... ..+.+..+..+....+|+|+
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~DVvI 70 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGP--LGVPVTDDLEEVLADADVLI 70 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC--CCCEECCCHHHHCCCCCEEE
T ss_conf 98999889887899999999858996899999438961225431001467--87111244777515788899
No 218
>KOG1370 consensus
Probab=38.52 E-value=30 Score=15.38 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=124.9
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC------C--
Q ss_conf 78445899999999999999996652366654437987999942888357899998986347543333210------0--
Q gi|255764473|r 9 ADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS------E-- 80 (306)
Q Consensus 9 l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~------~-- 80 (306)
++..+|.+.+|+--=..---+-..+++...++||+|..|+--. .--..|-.-.|+ --.||+.+..-+.. +
T Consensus 13 i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GCl-H~tvqTAVLIET-Lv~LGAev~WssCNIfSTQdhaA 90 (434)
T KOG1370 13 ISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCL-HMTVQTAVLIET-LVALGAEVRWSSCNIFSTQDHAA 90 (434)
T ss_pred CHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEE-EEEHHHHHHHHH-HHHHCCEEEEEECCCCCCHHHHH
T ss_conf 2465634256555542072477888873667888888642125-431237899999-99747615776401002405889
Q ss_pred ---------CCCCCCCCHHHHHHHHHHC-------CCEE--------------------EEEECCC------CHHHHHHC
Q ss_conf ---------0012321079999975300-------1011--------------------1210132------00677630
Q gi|255764473|r 81 ---------MQLGRAETIGDTAKVLSRY-------VDAI--------------------VMRTTNH------SRLLELTE 118 (306)
Q Consensus 81 ---------ss~~kgEsl~Dt~~~ls~~-------~D~i--------------------viR~~~~------~~~~~~~~ 118 (306)
.-..|||+.++.-..+.+- .+.| -+|..++ +.++.+.+
T Consensus 91 AAiA~~gvpvfawkget~ee~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm~k 170 (434)
T KOG1370 91 AAIAEAGVPVFAWKGETEEEYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKMSK 170 (434)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98875388612213665065564444321467898746655886423666655187875522623322154899999976
Q ss_pred C--CCCCEECCCCCCCHHHHHHHHHHHHHHHCC--------C-CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHC
Q ss_conf 1--244124043332024678765576642001--------3-3677304610455554310100123312576520000
Q gi|255764473|r 119 Y--ATVPVINALTDNTHPCQIIADIMTFEEHRG--------S-VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIG 187 (306)
Q Consensus 119 ~--~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g--------~-l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~ 187 (306)
. ..+|-||--|.-. -+-.-.+|..+|..- - +-|+.++++| ++.|..+-..++.-+|..+.+.--.
T Consensus 171 ~G~L~VPAiNVNDSVT--KsKFDnLygcreSl~DgikraTDVM~aGKv~Vv~G-YGdVGKgCaqaLkg~ga~VivTEiD- 246 (434)
T KOG1370 171 NGKLKVPAINVNDSVT--KSKFDNLYGCRESLLDGIKRATDVMIAGKVAVVCG-YGDVGKGCAQALKGFGARVIVTEID- 246 (434)
T ss_pred CCCEECCEEECCCHHH--HHHCCCCCCCHHHCHHHHHHHHHHEECCCEEEEEC-CCCCCHHHHHHHHCCCCEEEEECCC-
T ss_conf 7913054552253133--33223210221100036655445145251799963-5764566899975068689996058-
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCC
Q ss_conf 13210000243201332221366466306873322210000002201333100111233688996289872992599987
Q gi|255764473|r 188 SEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMNQEFKAREEHVFQPFQVNLSLMSMAHPDALFMHCLPAH 267 (306)
Q Consensus 188 ~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~~~~~~~~~~~~~~y~i~~~~l~~a~~~~~vmHplP~~ 267 (306)
| -..-.+.-.|..+ ..++|+.+.+|++.|.. +-. =.++.+.++.+|.|+++-.-|-
T Consensus 247 --P--I~ALQAaMeG~~V---~tm~ea~~e~difVTtT----Gc~-----------dii~~~H~~~mk~d~IvCN~Gh-- 302 (434)
T KOG1370 247 --P--ICALQAAMEGYEV---TTLEEAIREVDIFVTTT----GCK-----------DIITGEHFDQMKNDAIVCNIGH-- 302 (434)
T ss_pred --C--HHHHHHHHHCCEE---EEHHHHHHCCCEEEECC----CCC-----------CHHHHHHHHHCCCCCEEECCCC--
T ss_conf --0--6899987525375---46887641277899756----873-----------1233999974767737852565--
Q ss_pred CCCCCCHHHHCCC
Q ss_conf 4873576796799
Q gi|255764473|r 268 RGEEVINEVLDGP 280 (306)
Q Consensus 268 rg~EI~~~v~d~~ 280 (306)
-+.||+-.-+..|
T Consensus 303 fd~EiDv~~L~~~ 315 (434)
T KOG1370 303 FDTEIDVKWLNTP 315 (434)
T ss_pred CCCEEEHHHHCCC
T ss_conf 4301104330477
No 219
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=38.37 E-value=30 Score=15.37 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEE-EC-CCCHHHHHHCCCCCCEECCCCC--CCH
Q ss_conf 89999898634754333321000012321079999975-3001011121-01-3200677630124412404333--202
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMR-TT-NHSRLLELTEYATVPVINALTD--NTH 133 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR-~~-~~~~~~~~~~~~~vpvINa~~~--~~H 133 (306)
-...+.++.+-|-+++..+... ..|.-.+.++.| +..+|++++= .. +......+.++.++|++..+.. ...
T Consensus 18 ~~gi~~~~~~~gy~l~i~~s~~----~~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~~~~~~iPvV~id~~~~~~~ 93 (269)
T cd06275 18 VRGVEQYCYRQGYNLILCNTEG----DPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDF 93 (269)
T ss_pred HHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 9999999998699899996899----989999999999956999999936889837899999828998899846788899
Q ss_pred HHHHHHHHHH----HHHHCCCCCCCCEEEECCC
Q ss_conf 4678765576----6420013367730461045
Q gi|255764473|r 134 PCQIIADIMT----FEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 134 PtQaL~D~~T----i~e~~g~l~~~~i~~vGd~ 162 (306)
...+-.|-+. +-++.-.....++++++..
T Consensus 94 ~~~V~~D~~~~~~~a~~~Li~~G~~~i~~i~~~ 126 (269)
T cd06275 94 ADKIQDNSEEGGYLATRHLIELGHRRIGCITGP 126 (269)
T ss_pred CCEEEECHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 989997899999999999998299717755699
No 220
>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=38.10 E-value=19 Score=16.59 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEECC-CCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHH
Q ss_conf 046104-5555431010012331257652000013210000243
Q gi|255764473|r 156 FSWSGD-GNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWA 198 (306)
Q Consensus 156 i~~vGd-~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~ 198 (306)
|.|.+. ++|+.| .+..++.+|++++++.|-||..++..+..|
T Consensus 5 VLy~PeIP~NTGN-I~R~Caat~~~LHLi~PlGF~~~DK~L~RA 47 (161)
T TIGR00185 5 VLYEPEIPPNTGN-IVRTCAATGTRLHLIKPLGFELDDKRLKRA 47 (161)
T ss_pred EEECCCCCCCCCH-HHHHHHCCCCEEEEECCCCCCCCCCEEEEC
T ss_conf 7407889788411-201011158624566057862078142314
No 221
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=37.94 E-value=11 Score=18.09 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=11.8
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 63475433332100001232107999997530010111
Q gi|255764473|r 67 KHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIV 104 (306)
Q Consensus 67 ~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iv 104 (306)
..+|.+++..|.. ..|++....+ .+|+++
T Consensus 41 ~~~gve~v~gD~~-----d~~sl~~al~----gvd~v~ 69 (232)
T pfam05368 41 KAAGVELVEGDLD-----DHESLVEALK----GVDVVF 69 (232)
T ss_pred HHCCCEEEEECCC-----CHHHHHHHHC----CCCEEE
T ss_conf 4179889990688-----8789999967----998899
No 222
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=37.58 E-value=17 Score=17.01 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=5.1
Q ss_pred HHCCCEEEEEE
Q ss_conf 30010111210
Q gi|255764473|r 97 SRYVDAIVMRT 107 (306)
Q Consensus 97 s~~~D~iviR~ 107 (306)
+...|+||.=|
T Consensus 148 ~~GidvIVtDH 158 (574)
T PRK11070 148 SLGIPVIVTDH 158 (574)
T ss_pred HCCCCEEEECC
T ss_conf 77999999789
No 223
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=37.40 E-value=19 Score=16.63 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=15.2
Q ss_pred HHHHHHHHHC-CCEEEEE--ECCCCHHHHHHCCCCCC---EECCCC
Q ss_conf 9999975300-1011121--01320067763012441---240433
Q gi|255764473|r 90 GDTAKVLSRY-VDAIVMR--TTNHSRLLELTEYATVP---VINALT 129 (306)
Q Consensus 90 ~Dt~~~ls~~-~D~iviR--~~~~~~~~~~~~~~~vp---vINa~~ 129 (306)
+|.++.+..+ .|++++= .|-+-..+.+.+++..| ||..|+
T Consensus 100 ~~i~~~i~~~~p~a~iivvtNPvdv~t~~~~~~sg~p~~~viG~gt 145 (263)
T cd00650 100 KEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9998888732998369973894899999999835998302898632
No 224
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=37.38 E-value=31 Score=15.27 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=88.9
Q ss_pred EECCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCHHHHH-------HCC
Q ss_conf 94288--83578999989863475433332100001232107999997530-010111210132006776-------301
Q gi|255764473|r 50 IFEKP--STRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR-YVDAIVMRTTNHSRLLEL-------TEY 119 (306)
Q Consensus 50 lF~e~--StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~-~~D~iviR~~~~~~~~~~-------~~~ 119 (306)
+|=.| ..+.-.=+..+.+.+|.+..+.... .. .|.+++....+.. .+.++-+=.|--..+..+ ++.
T Consensus 10 liG~pi~hS~SP~ihn~~f~~~gl~~~Y~~~~---v~-~~~l~~~i~~l~~~~~~G~nVT~P~K~~v~~~ld~l~~~A~~ 85 (275)
T PRK00258 10 VIGNPIAHSKSPFIHNAAAKQLGLDGEYLAFL---VP-LDDLEDAVRGFFALGGKGANVTVPFKEAAFALADELSERARL 85 (275)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCEEEEEE---CC-HHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHH
T ss_conf 98888241307999999999869993899887---88-889999999777669877996689899998624602177887
Q ss_pred ---CCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCE-EEEEECHHCCCCCCCC
Q ss_conf ---24412404333-202467876557664200133677304610455554310100123312-5765200001321000
Q gi|255764473|r 120 ---ATVPVINALTD-NTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNY-LLNIATPIGSEPRNEY 194 (306)
Q Consensus 120 ---~~vpvINa~~~-~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~-~v~~~~P~~~~~~~~~ 194 (306)
.+. |++-.+. ..|-|-...=+.++.+.....+++++.++|-++ +++|-+.++..+|. ++.++....- ..
T Consensus 86 igavNT-i~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGG-aarai~~al~~~g~~~i~i~nR~~~----~a 159 (275)
T PRK00258 86 AGAVNT-LVLEDGRLIGDNTDGIGFVRDLERLGLDLKGKRILLLGAGG-AARAVILPLLELGVAEITIVNRTVE----RA 159 (275)
T ss_pred HCCEEE-EEEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCHH----HH
T ss_conf 455458-99559989998367789999999848785687599988871-0799999999769998999958999----99
Q ss_pred HHHHHCCCC--CCCCCCCHHHHCCCCCCCCCC
Q ss_conf 024320133--222136646630687332221
Q gi|255764473|r 195 LNWARNQGA--SVALFHDAVQAVKGAHCVFTD 224 (306)
Q Consensus 195 ~~~~~~~g~--~i~~~~d~~eal~~aD~V~~~ 224 (306)
...++..+. ......+......++|+|+-.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~diiIna 191 (275)
T PRK00258 160 EELAELFGEGVQALGLDELAGELADFDLIINT 191 (275)
T ss_pred HHHHHHHCCCCCEEEHHHHHHCCCCCCEEEEC
T ss_conf 99999835676275378754304457779965
No 225
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.23 E-value=24 Score=15.98 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=20.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 37987999942888357899998986347543333210
Q gi|255764473|r 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 42 l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~ 79 (306)
++||.|..+=. -+|=.|-.....+.|.+|...|..
T Consensus 4 ~~~k~v~V~Gl---G~sG~s~~~~L~~~G~~v~~~D~~ 38 (438)
T PRK03806 4 YQGKNVVIIGL---GLTGLSCVDFFLARGVTPRVMDTR 38 (438)
T ss_pred CCCCEEEEEEE---CHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 78998999945---788899999999789969999899
No 226
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=36.53 E-value=21 Score=16.36 Aligned_cols=149 Identities=13% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCCCCC
Q ss_conf 7717844589999999999999999665236665443798799994288835789999898634754----333321000
Q gi|255764473|r 6 KHFADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGD----TIFLSGSEM 81 (306)
Q Consensus 6 k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~----~~~~~~~~s 81 (306)
-|=+++-||.++-++.+.+--......+..-.. -.+..|.|| |+-.-=.|.-.+...+=.+ +..+|.+++
T Consensus 19 GH~v~~FDL~p~av~~~v~aG~~~A~S~~~a~~---~Ad~vITML---PAg~HV~sVY~gd~gIL~~~~K~~LlIDcSTI 92 (290)
T TIGR01692 19 GHAVRVFDLSPKAVEELVEAGAQAAASAAEAAE---GADVVITML---PAGKHVISVYSGDDGILAKVAKGSLLIDCSTI 92 (290)
T ss_pred CCEEEEEECCHHHHHHHHHCCHHCCCCHHHHHC---CCCEEEECC---CCCHHHHHHHHCCHHHHCCCCCCCCEEECCCC
T ss_conf 872577517889999999600220545798845---588686348---86034899983313341136788963324567
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEE---CCC-CHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 01232107999997530010111210---132-00677630124412404333202467876557664200133677304
Q gi|255764473|r 82 QLGRAETIGDTAKVLSRYVDAIVMRT---TNH-SRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFS 157 (306)
Q Consensus 82 s~~kgEsl~Dt~~~ls~~~D~iviR~---~~~-~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~ 157 (306)
. . |++|.+..-+..-..+- |-+ + .--++.-+.-++=+|.... +---++..... +.+|.
T Consensus 93 D---p----dsAr~~A~~Aa~~G~~f~DAPVSGG--~GgA~AGTLtFmVGG~a~~--------F~~~~p~L~~M-g~~~~ 154 (290)
T TIGR01692 93 D---P----DSARKVAELAAAHGLVFVDAPVSGG--VGGARAGTLTFMVGGEAEE--------FARARPVLEPM-GRNIV 154 (290)
T ss_pred C---H----HHHHHHHHHHHHCCCCEECCCCCCC--HHHHHHCCCEEEECCCHHH--------HHHHHHHHHCC-CCCEE
T ss_conf 8---6----7899999999981872103677753--5652012230564376535--------78899998536-66568
Q ss_pred EECCCC-----CCCCCHHHCCCCCCE
Q ss_conf 610455-----554310100123312
Q gi|255764473|r 158 WSGDGN-----NILHSLIEGAARFNY 178 (306)
Q Consensus 158 ~vGd~~-----~v~hS~i~~~~~~g~ 178 (306)
+|||++ -|+|=.+.+.+..|.
T Consensus 155 HcG~~GAGQ~AKICNNmlLGIsM~Gt 180 (290)
T TIGR01692 155 HCGDHGAGQAAKICNNMLLGISMIGT 180 (290)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 66888875157899889999989999
No 227
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=36.07 E-value=16 Score=17.08 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CC----H--HHHHHHHHHCCCEEEEEE--CC
Q ss_conf 4379879999428883578999989863475433332100001232---10----7--999997530010111210--13
Q gi|255764473|r 41 PLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRA---ET----I--GDTAKVLSRYVDAIVMRT--TN 109 (306)
Q Consensus 41 ~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kg---Es----l--~Dt~~~ls~~~D~iviR~--~~ 109 (306)
...|++|+.+=- .---| =+-.|+++||.++..+++..-+.... +. + .|..+-|..-+|++.+=. -+
T Consensus 4 ~~p~~tIGIlGg--GQLgr-Mla~aA~~lG~~v~vldp~~~~PA~~va~~~~~~~~~D~~al~~fa~~~DviT~E~EnI~ 80 (377)
T PRK06019 4 ILPGKTIGIIGG--GQLGR-MLALAAAPLGYKVIVLDPDADCPAAQVADRVIVADYDDVAALRELAEQCDVITYEFENVP 80 (377)
T ss_pred CCCCCEEEEECC--CHHHH-HHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 899999999878--68999-999999978998999848984984783784898688989999999845999997817689
Q ss_pred CCHHHHHHCC
Q ss_conf 2006776301
Q gi|255764473|r 110 HSRLLELTEY 119 (306)
Q Consensus 110 ~~~~~~~~~~ 119 (306)
...+..+.+.
T Consensus 81 ~~~L~~le~~ 90 (377)
T PRK06019 81 AEALDLLAAR 90 (377)
T ss_pred HHHHHHHHHC
T ss_conf 9999999708
No 228
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=35.93 E-value=5.1 Score=20.39 Aligned_cols=136 Identities=11% Similarity=0.158 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999665236665443798799994288835789999898634754333321000012321079999975
Q gi|255764473|r 17 SNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL 96 (306)
Q Consensus 17 ~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l 96 (306)
+++..|...+..-+....+ +..++.+.|=-+|.+|.+.+|..+..++-|..-.-.-..-..--|++.-+...-|
T Consensus 7 ~dF~~le~~~d~t~~~~e~------i~~~t~~~LqPNP~~R~~~~~~~~~~k~~g~~k~~~yp~~e~~Lg~~M~~~G~~l 80 (223)
T cd07615 7 DDFQEMERKIDVTNKVVAE------LLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGREL 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8999999999999999999------9998899948993034899999889887145578888861548999999986517
Q ss_pred H---HCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHH--HHHHHHHHCCCCCCCCEEEECC
Q ss_conf 3---001011121013200677630124412404333202467876--5576642001336773046104
Q gi|255764473|r 97 S---RYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIA--DIMTFEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 97 s---~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~--D~~Ti~e~~g~l~~~~i~~vGd 161 (306)
+ .|..+++-=+ .+...++..-.--+.++..+.-.|.+-+. |+-||..+++.+++.++.|=..
T Consensus 81 g~~S~yG~aL~~~G---ea~~~la~~~~~~~~~~~~~fL~PL~~~~e~d~Kei~~~RKkLe~rRLD~D~k 147 (223)
T cd07615 81 GEESTFGNALLDVG---ESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYK 147 (223)
T ss_pred CCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99973899999999---99999999999999999999988999988877999999999986041358998
No 229
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=35.71 E-value=22 Score=16.21 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC---HHHHHHCC--CCCCEECCCC
Q ss_conf 835789999898634754333321000012321079999975300101112101320---06776301--2441240433
Q gi|255764473|r 55 STRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS---RLLELTEY--ATVPVINALT 129 (306)
Q Consensus 55 StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~---~~~~~~~~--~~vpvINa~~ 129 (306)
|.|+.-..+.+..+.|..+.. + ..+. ..-.|++++=..++. .+.++..+ .+..||+-.-
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-~-----------~~e~----~~~~Dii~LaVKP~~~~~vl~~l~~~~~~~~lviSi~A 98 (272)
T PRK12491 35 SDLNVSNLKNASDKYGITITT-N-----------NNEV----ANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAA 98 (272)
T ss_pred ECCCHHHHHHHHHHCCCEEEC-C-----------HHHH----HHHCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 697999999999971978866-8-----------7999----73199999995778999999998655269918999848
Q ss_pred C
Q ss_conf 3
Q gi|255764473|r 130 D 130 (306)
Q Consensus 130 ~ 130 (306)
|
T Consensus 99 G 99 (272)
T PRK12491 99 G 99 (272)
T ss_pred C
T ss_conf 9
No 230
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=35.60 E-value=33 Score=15.09 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 107999997530010111210132006776301244124043332024678765576642001336773046104555
Q gi|255764473|r 87 ETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNN 164 (306)
Q Consensus 87 Esl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~ 164 (306)
+++..|++-|-.++|+.+.-...-+.+.++++...+|+=+-.. .+||-- =++ -++|.++ .+.++..||++.|
T Consensus 33 ~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~gi~~~rv~a-~a~~e~-K~~--ii~eLkk--~~~k~vmVGnGaN 104 (152)
T COG4087 33 SEVSETIQELHDMVDIYIASGDRKGSLVQLAEFVGIPVERVFA-GADPEM-KAK--IIRELKK--RYEKVVMVGNGAN 104 (152)
T ss_pred HHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEEEEC-CCCHHH-HHH--HHHHHCC--CCCEEEEECCCCC
T ss_conf 7557899999876137884287323799999873996051103-467878-999--9998447--7717999647752
No 231
>pfam05222 AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=35.56 E-value=33 Score=15.08 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=52.1
Q ss_pred CCEEEECCCCCCCCCHHHCCCCCCEEEEEECHH---CCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEECC
Q ss_conf 730461045555431010012331257652000---01321000024320133222136646630687332221000000
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGAARFNYLLNIATPI---GSEPRNEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISMN 230 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~---~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~~ 230 (306)
.+|+++++ ++..+ .++|++|.+=.-. ...++.+|. +.|.++ ..+..+.+.++|+|..-.-.+..
T Consensus 11 ~RValtP~---~vkkl----~~~G~~V~iE~gaG~~s~f~D~~Y~----~aGa~i--~~~~~e~~~~adiIl~v~~p~~~ 77 (135)
T pfam05222 11 RRVALTPA---GVKKL----VKLGHEVLVESGAGLGAGFSDEAYE----AAGAEI--VDSAAEVWAQADLILKVKEPSPE 77 (135)
T ss_pred CCCCCCHH---HHHHH----HHCCCEEEEECCCCCCCCCCHHHHH----HCCCCE--ECCCHHHHHHCCEEEEECCCCHH
T ss_conf 07165999---99999----9789989997498851772679998----646621--10110233324468875799999
Q ss_pred CCCHHHH----HHCCCCCCCCHHHHHC---CCCCCEEECCCCCCCCC
Q ss_conf 2201333----1001112336889962---89872992599987487
Q gi|255764473|r 231 QEFKARE----EHVFQPFQVNLSLMSM---AHPDALFMHCLPAHRGE 270 (306)
Q Consensus 231 ~~~~~~~----~~~~~~y~i~~~~l~~---a~~~~~vmHplP~~rg~ 270 (306)
+-..... -.++.+|+ |.++++. .+-.++=|..+|.-|+.
T Consensus 78 e~~~lk~~~~li~~l~p~~-n~~~~~~l~~~~it~~s~E~ipr~raQ 123 (135)
T pfam05222 78 ELALLRPGQTLITFLHPAA-NPELLEALAAKGVTAIAYETVPRIRAQ 123 (135)
T ss_pred HHHHCCCCCEEEEECCCCC-CHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 9985369989999737345-999999999869959981246147776
No 232
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.51 E-value=33 Score=15.08 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECCC-CHHHHHHCCCCCCEECCCCC--CCHH
Q ss_conf 89999898634754333321000012321079999975-30010111210132-00677630124412404333--2024
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTNH-SRLLELTEYATVPVINALTD--NTHP 134 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~~-~~~~~~~~~~~vpvINa~~~--~~HP 134 (306)
=-.-|.++++.|-+++..+.... ..+..++.++.| +..+|++++-.... ..........++|||--+.. ...|
T Consensus 18 ~~gie~~~~~~Gy~~~l~~~~~~---~~~~~~~~i~~l~~~~vdGiI~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~~~~ 94 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEA---DEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADVPVVFVDGSPSPRVS 94 (264)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 99999999984997999979999---899999999999964999999916889969999998589968998667999998
Q ss_pred HHHHHHHHH-HH---HHCCCCCCCCEEEECC
Q ss_conf 678765576-64---2001336773046104
Q gi|255764473|r 135 CQIIADIMT-FE---EHRGSVKGKLFSWSGD 161 (306)
Q Consensus 135 tQaL~D~~T-i~---e~~g~l~~~~i~~vGd 161 (306)
+ +..|-+- .. ++.-..--.+++++|.
T Consensus 95 ~-V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~ 124 (264)
T cd01574 95 T-VSVDQEGGARLATEHLLELGHRTIAHVAG 124 (264)
T ss_pred E-EEECHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 8-99788999999999999849982732589
No 233
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.51 E-value=32 Score=15.17 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=4.9
Q ss_pred HHHCCCCCCCCC
Q ss_conf 863475433332
Q gi|255764473|r 66 MKHLGGDTIFLS 77 (306)
Q Consensus 66 ~~~LG~~~~~~~ 77 (306)
..++|..+...|
T Consensus 31 L~~~G~~v~~~D 42 (487)
T PRK03369 31 LTRFGARPTVCD 42 (487)
T ss_pred HHHCCCEEEEEE
T ss_conf 997869799998
No 234
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=35.15 E-value=33 Score=15.04 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=49.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHC-CCEEEEEECCC---------
Q ss_conf 9879999428883578999989863475433332100001232107---9999975300-10111210132---------
Q gi|255764473|r 44 GKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETI---GDTAKVLSRY-VDAIVMRTTNH--------- 110 (306)
Q Consensus 44 gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl---~Dt~~~ls~~-~D~iviR~~~~--------- 110 (306)
.|.|+.+=--.|--|++|+++| ++++|.+++.| ++|+.||=.+ +-+..-.... ..++-+..+.+
T Consensus 4 ~~ii~i~GpTasGKs~la~~la-~~~~~eIIsaD--S~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~~f~~ 80 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELA-KRLNGEIISVD--SMQVYRGMDIGTAKPTAEELAGVPHHLIDILDPTESYSAADFQR 80 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HHCCCEEEEEC--HHHHHCCCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHHHHHH
T ss_conf 9779998988658999999999-98799899412--68874999868899999998189812434565887544999999
Q ss_pred ---CHHHHHHCCCCCCEECCCCCCCHHHHHHH
Q ss_conf ---00677630124412404333202467876
Q gi|255764473|r 111 ---SRLLELTEYATVPVINALTDNTHPCQIIA 139 (306)
Q Consensus 111 ---~~~~~~~~~~~vpvINa~~~~~HPtQaL~ 139 (306)
..+.++.+.-.+|||=||+|.+ -++|+
T Consensus 81 ~a~~~i~~i~~~~kiPIiVGGTglY--l~aLl 110 (304)
T PRK00091 81 DALAAIEDITARGKLPILVGGTGLY--FKALL 110 (304)
T ss_pred HHHHHHHHHHHCCCCCEEECCCHHH--HHHHH
T ss_conf 9999999999769987898083899--99997
No 235
>pfam12264 Peptidase_C03 Spherical virus-type peptidase. This protein is found in viruses. Proteins in this family are typically between 206 to 703 amino acids in length. Picornaviruses translate a large polyprotein and require protease activity to cleave this into individual peptides. This family is the protease utilized by this virus for this purpose. It is found on the C terminal of the viral RNA polymerase.
Probab=35.15 E-value=33 Score=15.04 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=19.1
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4437987999942888357899998986347543333210000
Q gi|255764473|r 40 KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQ 82 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss 82 (306)
.|+.|.++++...--|+|||--..+..+--|.--+.+++.+||
T Consensus 84 ip~hgGtL~~AwDal~~aTrqgi~t~vqlt~LP~~~i~a~~sS 126 (197)
T pfam12264 84 IPMHGGTLLAAWDALGCATRQGIATMVQLTGLPSMTIEAHSSS 126 (197)
T ss_pred EECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 6224745998760125367765566551047883699832671
No 236
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=35.06 E-value=22 Score=16.17 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCCCCCHHHCCCCCCEEEEEECHHCCCC
Q ss_conf 5554310100123312576520000132
Q gi|255764473|r 163 NNILHSLIEGAARFNYLLNIATPIGSEP 190 (306)
Q Consensus 163 ~~v~hS~i~~~~~~g~~v~~~~P~~~~~ 190 (306)
.|+.++++.++.. |..+.++.|..-+.
T Consensus 112 ~ril~~lV~a~~~-~~~lGVvvP~~eQ~ 138 (221)
T pfam07302 112 QRILPPLVASIVD-GHQLGVIVPLPEQI 138 (221)
T ss_pred HHHHHHHHHHHCC-CCEEEEEECCHHHH
T ss_conf 8867899998678-98599995579999
No 237
>PRK03094 hypothetical protein; Provisional
Probab=34.93 E-value=20 Score=16.54 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCC-CHHHHH
Q ss_conf 989863475433332100001232107999997530010111210132006776301244124043332-024678
Q gi|255764473|r 63 EVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDN-THPCQI 137 (306)
Q Consensus 63 e~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~-~HPtQa 137 (306)
.-+-++-|-.|+.++.. .| ...+|++|+-..+....-.---....|||||-+-. +-=||.
T Consensus 14 ~~~L~~~GY~Vv~l~~~----------~~-----a~~~Da~ViTG~d~N~mGiqd~~t~~pVI~A~GlTaeEI~~~ 74 (80)
T PRK03094 14 QQALKQKGYEVVTLNSE----------QD-----AQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQ 74 (80)
T ss_pred HHHHHHCCCEEEECCCC----------CC-----CCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
T ss_conf 99999779878966871----------43-----356788999589765226441345687486789999999999
No 238
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=34.92 E-value=20 Score=16.47 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCC-CHHHHHH
Q ss_conf 989863475433332100001232107999997530010111210132006776301244124043332-0246787
Q gi|255764473|r 63 EVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDN-THPCQII 138 (306)
Q Consensus 63 e~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~-~HPtQaL 138 (306)
.-+-+.-|.+|+.++.. .| ...+|++|+-..+...+-.---....|||||-+-. +-=||.+
T Consensus 14 ~e~L~~~Gy~Vv~l~~~----------~~-----~~~~da~VitG~d~N~mGi~d~~t~~pVI~A~G~TaeEI~~~v 75 (80)
T pfam03698 14 EEALKEKGYEVVRLKNE----------QD-----AQGCDACVVTGLDSNMMGIEDTVTKAPVIDASGLTAEEICQEV 75 (80)
T ss_pred HHHHHHCCCEEEECCCC----------CC-----CCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHH
T ss_conf 99999779878867870----------32-----5665889995898652144133456874866899999999999
No 239
>PRK10200 putative racemase; Provisional
Probab=34.62 E-value=33 Score=15.10 Aligned_cols=84 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHH-HCCCEEEEEEC-CCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 210799999753-00101112101-3200677630124412404333202467876557664200133677304610455
Q gi|255764473|r 86 AETIGDTAKVLS-RYVDAIVMRTT-NHSRLLELTEYATVPVINALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGN 163 (306)
Q Consensus 86 gEsl~Dt~~~ls-~~~D~iviR~~-~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~ 163 (306)
++-+.+.++-|. ..+|++++=+. .|....++.+.+++|+||..+... +++. +. .-.+|++.|-..
T Consensus 61 ~~~L~~~a~~Le~aGAd~i~i~cNTaH~~~d~i~~~~~iP~l~i~~~t~---~~i~------~~----g~~~VglLgT~~ 127 (230)
T PRK10200 61 GDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATG---RAIA------GA----GMTRVALLGTRY 127 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHH---HHHH------HC----CCCEEEEECCHH
T ss_conf 9999999999998499999964747899999999756998731899999---9999------75----998589851456
Q ss_pred CCCCCHHH--C-CCCCCEEEEEECH
Q ss_conf 55431010--0-1233125765200
Q gi|255764473|r 164 NILHSLIE--G-AARFNYLLNIATP 185 (306)
Q Consensus 164 ~v~hS~i~--~-~~~~g~~v~~~~P 185 (306)
+..|-+. . ..++|.++ +.|
T Consensus 128 -Tm~~~~Y~~~l~~~~gi~~--v~P 149 (230)
T PRK10200 128 -TMEQDFYRGRLTEQFSINC--LIP 149 (230)
T ss_pred -HHHHHHHHHHHHHHCCCEE--ECC
T ss_conf -6661688999998579858--679
No 240
>pfam04918 DltD_M DltD central region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the central region of DltD.
Probab=34.43 E-value=24 Score=16.01 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 67876557664200133677304610
Q gi|255764473|r 135 CQIIADIMTFEEHRGSVKGKLFSWSG 160 (306)
Q Consensus 135 tQaL~D~~Ti~e~~g~l~~~~i~~vG 160 (306)
||.|..++.|....+.++|+|+++|=
T Consensus 6 sqsL~h~~~~~~~~~~lk~kK~vfii 31 (163)
T pfam04918 6 STSLSHYFGMQQQYDQLKGKKAVFVI 31 (163)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 21499999999888772488489887
No 241
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.30 E-value=34 Score=14.95 Aligned_cols=113 Identities=11% Similarity=0.183 Sum_probs=58.1
Q ss_pred EEEEEECCCCC---------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCEEEEE-ECCCCHHH
Q ss_conf 79999428883---------57899998986347543333210000123210799999753-001011121-01320067
Q gi|255764473|r 46 VLAMIFEKPST---------RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLS-RYVDAIVMR-TTNHSRLL 114 (306)
Q Consensus 46 ~i~~lF~e~St---------RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls-~~~D~iviR-~~~~~~~~ 114 (306)
||+.++-..|. +--.+.|.++++.|-+++..+..+ ..|..+...+++. ..+|++++= ...+....
T Consensus 1 TIGvivP~~~~~~i~Npff~~l~~gie~~~~~~Gy~lli~~~~~----~~~~~~~~~~~l~~~~vDGiIi~~~~~~~~~~ 76 (270)
T cd06294 1 TIGVVLPPSADEAFQNPFFIEVLRGISAVANENGYDISLATGKN----EEELLEEVKKMIQQKRVDGFILLYSREDDPII 76 (270)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 98999857866665698999999999999998599899991899----69999999999982799889995798984999
Q ss_pred HHHCCCCCCEECCCCCCCH--HH-HHHHH----HHHHHHHCCCCCCCCEEEECCC
Q ss_conf 7630124412404333202--46-78765----5766420013367730461045
Q gi|255764473|r 115 ELTEYATVPVINALTDNTH--PC-QIIAD----IMTFEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 115 ~~~~~~~vpvINa~~~~~H--Pt-QaL~D----~~Ti~e~~g~l~~~~i~~vGd~ 162 (306)
+..+..++|+|--+....+ ++ .+-.| .+..-++.-..--.+|+++|..
T Consensus 77 ~~l~~~~iP~V~i~r~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Ghr~I~~i~~~ 131 (270)
T cd06294 77 DYLKEEKFPFVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGD 131 (270)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999769999998775688899849937779999999999997699569998189
No 242
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=34.29 E-value=23 Score=16.08 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=8.8
Q ss_pred ECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4288835789999898634754
Q gi|255764473|r 51 FEKPSTRTRVSFEVAMKHLGGD 72 (306)
Q Consensus 51 F~e~StRTR~SFe~A~~~LG~~ 72 (306)
-.+++...|. .-+.++|..
T Consensus 33 v~~~~~e~~~---~l~~~~g~~ 51 (266)
T COG0345 33 VTNRSEEKRA---ALAAEYGVV 51 (266)
T ss_pred EECCCHHHHH---HHHHHCCCC
T ss_conf 8379999999---999984985
No 243
>PRK08507 prephenate dehydrogenase; Validated
Probab=34.27 E-value=25 Score=15.87 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCHHHHHHCC
Q ss_conf 10111210132006776301
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEY 119 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~ 119 (306)
+|++++=+|-......+.+.
T Consensus 59 aDlVila~Pv~~~~~~l~~l 78 (275)
T PRK08507 59 CDVIFLAIPVDAIIEILQKL 78 (275)
T ss_pred CCEEEEECCHHHHHHHHHHH
T ss_conf 79899917699999999998
No 244
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=34.09 E-value=35 Score=14.93 Aligned_cols=258 Identities=14% Similarity=0.128 Sum_probs=116.9
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----------CCCCHHHHHH-HHHHCCCEEEEEE
Q ss_conf 443798799994288835789999898634754333321000012-----------3210799999-7530010111210
Q gi|255764473|r 40 KPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLG-----------RAETIGDTAK-VLSRYVDAIVMRT 107 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~-----------kgEsl~Dt~~-~ls~~~D~iviR~ 107 (306)
.+-+||.|+.+=-=|+ =+|-..--.++|-.|..|....--.+ -.|.+..-+. +.+.. +-+|.
T Consensus 133 ~~~tgkkVAVIGaGPA---GLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~G---V~~~~ 206 (560)
T PRK12771 133 APDTGKRVAVIGGGPA---GLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLG---VEVKL 206 (560)
T ss_pred CCCCCCEEEEECCCHH---HHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCC---CEEEE
T ss_conf 7778998999897789---99999999976985899676788898883568754475899999999999649---67983
Q ss_pred ----CCCCHHHHHHCCCCCCEECCCCCC--------CHHHHHH--HHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHC
Q ss_conf ----132006776301244124043332--------0246787--6557664200-133677304610455554310100
Q gi|255764473|r 108 ----TNHSRLLELTEYATVPVINALTDN--------THPCQII--ADIMTFEEHR-GSVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 108 ----~~~~~~~~~~~~~~vpvINa~~~~--------~HPtQaL--~D~~Ti~e~~-g~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
..+-.+.++.+--+.=+|--|... ++...+. +|++.-.... ....|++|+++|.+| |+---+..
T Consensus 207 n~~vg~dit~~~L~~~yDAV~la~Ga~~~r~l~i~G~d~~gV~~al~fL~~~~~g~~~~~Gk~VvVIGGGn-tAmD~art 285 (560)
T PRK12771 207 GVRVGEDITLEQLEGDYDAVFVAIGAQLGKRLPIPGEDAANVLDAVSFLRAVEEGEPPKLGKRVVVIGGGN-TAMDAART 285 (560)
T ss_pred CCEECCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCC-HHHHHHHH
T ss_conf 87844656799971778889991687877608978877655240599999975689755688689989982-28999999
Q ss_pred CCCCCE-EEEEECHHC--CCCC-CCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEC--CCCCHH--HHHH-----
Q ss_conf 123312-576520000--1321-00002432013322213664663068733222100000--022013--3310-----
Q gi|255764473|r 173 AARFNY-LLNIATPIG--SEPR-NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISM--NQEFKA--REEH----- 239 (306)
Q Consensus 173 ~~~~g~-~v~~~~P~~--~~~~-~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~--~~~~~~--~~~~----- 239 (306)
+.|+|. +++++.... ..|. +.-++.+...|..+.....+.+.+.+.+-|---....| ++.... ....
T Consensus 286 A~RlGa~~V~ivyrr~~~~MpA~~~Ei~~A~eEGV~~~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~a 365 (560)
T PRK12771 286 ARRLGAEEVVIVYRRTREEMPAHAFEIDDALREGVEINWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEA 365 (560)
T ss_pred HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEC
T ss_conf 99738976999831442028999899987874795689634647998069859899999999889988788997267546
Q ss_pred --CCC--CCCCCHHHHHC-----CCCCCEEECCC---CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --011--12336889962-----89872992599---98748735767967997106868775599999999996255
Q gi|255764473|r 240 --VFQ--PFQVNLSLMSM-----AHPDALFMHCL---PAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAILLWCFGI 305 (306)
Q Consensus 240 --~~~--~y~i~~~~l~~-----a~~~~~vmHpl---P~~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr~AiL~~~lG~ 305 (306)
... .-..+...++. .+.+.+.--+- .-.-|+=...|+..+|..++ +-+..|--+..+|-.|+.|-
T Consensus 366 D~VI~AiGq~~d~~~l~~~~~~~~~~g~i~~~~~~~~Ts~~gVFa~GD~v~Gp~~vv-~AI~~Gr~AA~~Id~yL~G~ 442 (560)
T PRK12771 366 DMVVLAIGQDTDSEFLEGLPGVRNGRGGLVVDRNFRMTGRPGVFAGGDMVPGERTVT-TAVGHGKKAARHIDAFLRGE 442 (560)
T ss_pred CEEEECCCCCCCCCHHCCCCCEEECCCCEEECCCCCCCCCCCEEECCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCC
T ss_conf 899992257887300023655471799888478766579988674365466841899-99999999999999996689
No 245
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=33.48 E-value=21 Score=16.39 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH-HCCCCCCCCHHHHHCC---CCCCCCCCCHHHHCCCCC
Q ss_conf 36773046104555543101001233125765200-0013210000243201---332221366466306873
Q gi|255764473|r 151 VKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP-IGSEPRNEYLNWARNQ---GASVALFHDAVQAVKGAH 219 (306)
Q Consensus 151 l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P-~~~~~~~~~~~~~~~~---g~~i~~~~d~~eal~~aD 219 (306)
++|++|+.||..+ .+=.=..-|++++.+|+++++ ..|.-++-+++.++++ +..+..-+.++ .+.+..
T Consensus 149 fk~K~V~VvGGGd-sA~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~-Ei~G~~ 219 (321)
T TIGR01292 149 FKNKEVAVVGGGD-SALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVE-EIVGDN 219 (321)
T ss_pred HCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEE-EEECCC
T ss_conf 0598899987982-4888889998538767999779863632899989983789878996486899-996178
No 246
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=33.38 E-value=36 Score=14.86 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCC---H
Q ss_conf 789999898634754333321000012321079999975-300101112101320067763012441240433320---2
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNT---H 133 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~---H 133 (306)
.--..+.++++.|-+++..+... +..+. .+..+.+ +..+|++++=...............+|||-.+.... .
T Consensus 17 ~~~gi~~~~~~~gy~~~i~~s~~-~~~~e---~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~PvV~i~~~~~~~~~ 92 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRS-DPERE---QEYLDLLRRKQADGIILLDGSLPPTALTALAKLPPIVQACEYIPGLAV 92 (267)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CHHHH---HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 99999999998699899997899-98999---999999984799859982788999999998479999998677888999
Q ss_pred HHHHHHHHH----HHHHHCCCCCCCCEEEECCC
Q ss_conf 467876557----66420013367730461045
Q gi|255764473|r 134 PCQIIADIM----TFEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 134 PtQaL~D~~----Ti~e~~g~l~~~~i~~vGd~ 162 (306)
|+ +-.|-+ .+-++.-.....++++++..
T Consensus 93 ~~-V~~Dn~~a~~~~~~~L~~~G~~~i~~i~~~ 124 (267)
T cd06284 93 PS-VSIDNVAAARLAVDHLISLGHRRIALITGP 124 (267)
T ss_pred CE-EEECHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 88-996789999999999997099769996288
No 247
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.33 E-value=36 Score=14.85 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=29.9
Q ss_pred EEEEECCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEEC
Q ss_conf 9999428883578999989-8634754333321000012321079999975-300101112101
Q gi|255764473|r 47 LAMIFEKPSTRTRVSFEVA-MKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTT 108 (306)
Q Consensus 47 i~~lF~e~StRTR~SFe~A-~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~ 108 (306)
-|-+|.+|.+-.-+.--.. +++-+..+..+..+ |++ .+ ..+++++|+|..
T Consensus 36 ~A~~~~~p~~~~~l~~~~~~~~~~~ip~~vlG~G-SNl-----------Lv~D~g~~GiVI~l~ 87 (307)
T PRK13906 36 NADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNG-SNI-----------IIREGGIRGIVISLL 87 (307)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCC-EEE-----------EEECCCCCEEEEEEC
T ss_conf 9789996499999999999898769978998270-699-----------896698032899955
No 248
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=32.90 E-value=36 Score=14.81 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=43.4
Q ss_pred CEEEEEECCCCCHHHHHH-HHHHHHCCC-CCCCCCCCCCCCCC-CCCHHHHHHHHHHC-----CCE-EEEEECC------
Q ss_conf 879999428883578999-989863475-43333210000123-21079999975300-----101-1121013------
Q gi|255764473|r 45 KVLAMIFEKPSTRTRVSF-EVAMKHLGG-DTIFLSGSEMQLGR-AETIGDTAKVLSRY-----VDA-IVMRTTN------ 109 (306)
Q Consensus 45 k~i~~lF~e~StRTR~SF-e~A~~~LG~-~~~~~~~~~ss~~k-gEsl~Dt~~~ls~~-----~D~-iviR~~~------ 109 (306)
+.||.+=-..+- ---=| ...-++-.+ ++..+ +...|... .+++...++.+..+ +|+ +++|+..
T Consensus 15 ~~IgvITS~~gA-a~~Di~~~~~~r~p~~~i~l~-p~~VQG~~a~~~I~~ai~~~~~~~~~~~~Dviii~RGGGS~eDL~ 92 (295)
T pfam02601 15 KRIAVITSATGA-AYQDFLRTARRRGPLVEIEIY-PTLVQGDGAAESIVSALERANERETALDYDVIVIIRGGGSKEDLW 92 (295)
T ss_pred CEEEEEECCCCH-HHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 989998489408-999999999981999679994-735765048999999999998468989983899957868889874
Q ss_pred ---CCHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHHH
Q ss_conf ---20067763012441240433320246-78765576
Q gi|255764473|r 110 ---HSRLLELTEYATVPVINALTDNTHPC-QIIADIMT 143 (306)
Q Consensus 110 ---~~~~~~~~~~~~vpvINa~~~~~HPt-QaL~D~~T 143 (306)
+..+-.....+.+|||.|=+ |=| -.|+|+-.
T Consensus 93 ~FN~e~laraI~~~~iPvisaIG---HEtD~Tl~D~VA 127 (295)
T pfam02601 93 VFNDEELARAIANSPIPVITGIG---HETDTTIADLVA 127 (295)
T ss_pred HCCHHHHHHHHHHCCCCEEECCC---CCCCCCHHHHHH
T ss_conf 55889999999838998780678---899961888887
No 249
>PRK06199 ornithine cyclodeaminase; Validated
Probab=32.51 E-value=23 Score=16.15 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=39.3
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCC-CCC-CEE-EEEECHHCCCCCCCCHHHHHC---CCCCCCCCCCHHHHCCCCCCC
Q ss_conf 01336773046104555543101001-233-125-765200001321000024320---133222136646630687332
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGA-ARF-NYL-LNIATPIGSEPRNEYLNWARN---QGASVALFHDAVQAVKGAHCV 221 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~-~~~-g~~-v~~~~P~~~~~~~~~~~~~~~---~g~~i~~~~d~~eal~~aD~V 221 (306)
...-+..+++++|-+. .++..++++ ... +.+ +.+..+.. .-.+.+..+.+. .+..+....+.+++++++|+|
T Consensus 150 LAr~da~~lgiIG~G~-qAr~~l~Al~~vrp~i~~V~V~~r~~-~~a~~fa~~~~~~~~~~~~v~~~~s~eeav~~aDIV 227 (379)
T PRK06199 150 LARKDAKVVGLVGPGV-MGKTIVAAFMAVCPGIDTIKIKGRSQ-KSLDAFATWVAETYPQITEVVVVDSEEEVVRGSDIV 227 (379)
T ss_pred HCCCCCCEEEEECCHH-HHHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCEE
T ss_conf 5558997899989639-99999999998617888899988999-999999999997668885089829999997379999
Q ss_pred CCCC
Q ss_conf 2210
Q gi|255764473|r 222 FTDT 225 (306)
Q Consensus 222 ~~~~ 225 (306)
.+-.
T Consensus 228 vtaT 231 (379)
T PRK06199 228 TYCT 231 (379)
T ss_pred EECC
T ss_conf 9777
No 250
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=32.39 E-value=23 Score=16.13 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEE
Q ss_conf 9898634754333321000012321079999975300--1011121
Q gi|255764473|r 63 EVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY--VDAIVMR 106 (306)
Q Consensus 63 e~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~--~D~iviR 106 (306)
.+=|+.||-+.-..++.. + |--.|-+..|++. -|++-|=
T Consensus 48 ~IiA~Emg~~l~iTsGP~--L---~kPgDlaaiLt~L~~gDVLFID 88 (305)
T TIGR00635 48 HIIANEMGVNLKITSGPA--L---EKPGDLAAILTNLEEGDVLFID 88 (305)
T ss_pred HHHHHHHCCCCEEEECCC--C---CCHHHHHHHHHHCCCCCEEECC
T ss_conf 999998389326740675--5---4757899999705689631012
No 251
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=32.37 E-value=26 Score=15.74 Aligned_cols=24 Identities=17% Similarity=0.431 Sum_probs=18.8
Q ss_pred CCCHH-HHHCCCCCCEEECCCCCCC
Q ss_conf 33688-9962898729925999874
Q gi|255764473|r 245 QVNLS-LMSMAHPDALFMHCLPAHR 268 (306)
Q Consensus 245 ~i~~~-~l~~a~~~~~vmHplP~~r 268 (306)
++..| +|+.++..++||.|+|++=
T Consensus 126 SiHLENmL~L~~~G~IIlPP~PaFY 150 (181)
T TIGR00421 126 SIHLENMLRLSRMGAIILPPVPAFY 150 (181)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 1548999999827925327955444
No 252
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.93 E-value=38 Score=14.70 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEEC----CC---CHHHHHHCCCCCCEECCCC
Q ss_conf 89999898634754333321000012321079999975-300101112101----32---0067763012441240433
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTT----NH---SRLLELTEYATVPVINALT 129 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~----~~---~~~~~~~~~~~vpvINa~~ 129 (306)
--+.+.++++.|-+++..+...+. |.-++..+.| +..+|++++-.. .+ ..+..+. ..++||+..+.
T Consensus 18 ~~gi~~~~~~~gy~~li~~s~~~~----~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~-~~~iPvV~i~~ 91 (273)
T cd01541 18 IRGIESVLSEKGYSLLLASTNNDP----ERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLE-KLGIPYVFINA 91 (273)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH-HCCCCEEEEEC
T ss_conf 999999999869989999789998----999999999996599989992531035787779999999-76998999956
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.82 E-value=38 Score=14.69 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH-----HCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 4678765576642001336773046104555543101-----00123312576520000132100002432013322213
Q gi|255764473|r 134 PCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLI-----EGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALF 208 (306)
Q Consensus 134 PtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i-----~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~ 208 (306)
|-.++.++.++.+.+. .+..+.+.|+++ |.-|++ ..+.+.|..+.++.-+.+ ....+..-..-...
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G-~GKthLa~Ai~~~l~~~g~sv~f~~~~el------~~~Lk~~~~~~~~~ 158 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPG-VGKTHLAIAIGNELLKAGISVLFITAPDL------LSKLKAAFDEGRLE 158 (254)
T ss_pred HHHHHHHHHHHHHHHC--CCCCEEEECCCC-CCHHHHHHHHHHHHHHCCCEEEEEEHHHH------HHHHHHHHHCCCHH
T ss_conf 6999999999998732--588289989999-87999999999999983984999885999------99999987455268
Q ss_pred CCHHHHCCCCCCCCCCCEEE
Q ss_conf 66466306873322210000
Q gi|255764473|r 209 HDAVQAVKGAHCVFTDTWIS 228 (306)
Q Consensus 209 ~d~~eal~~aD~V~~~~~~~ 228 (306)
..+...+..+|+++.|-+..
T Consensus 159 ~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 159 EKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHHHHCCEEEEECCCC
T ss_conf 99998875289899823677
No 254
>COG1160 Predicted GTPases [General function prediction only]
Probab=31.75 E-value=33 Score=15.08 Aligned_cols=142 Identities=19% Similarity=0.267 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH--HHH-H-CCCEEEEEE-------
Q ss_conf 4437987999942888-357899998986347543333210000123210799999--753-0-010111210-------
Q gi|255764473|r 40 KPLSGKVLAMIFEKPS-TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK--VLS-R-YVDAIVMRT------- 107 (306)
Q Consensus 40 ~~l~gk~i~~lF~e~S-tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~--~ls-~-~~D~iviR~------- 107 (306)
+.|.|+.++++=..|. ||-|.- ..+..+|-.+..+|-+..-....+.+..-.+ ++. . -.|++..=.
T Consensus 21 NRL~g~r~AIV~D~pGvTRDr~y--~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git 98 (444)
T COG1160 21 NRLTGRRIAIVSDTPGVTRDRIY--GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT 98 (444)
T ss_pred HHHHCCEEEEEECCCCCCCCCCC--CEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
T ss_conf 88757702676069997557754--5069838607999789977688128999999999999976799999984887899
Q ss_pred CCCCHHHHHHCCCCCC---EECCCCCCC----------------HH-----HHHHHHHHH-HHHHC------CCC---CC
Q ss_conf 1320067763012441---240433320----------------24-----678765576-64200------133---67
Q gi|255764473|r 108 TNHSRLLELTEYATVP---VINALTDNT----------------HP-----CQIIADIMT-FEEHR------GSV---KG 153 (306)
Q Consensus 108 ~~~~~~~~~~~~~~vp---vINa~~~~~----------------HP-----tQaL~D~~T-i~e~~------g~l---~~ 153 (306)
+.+..+..+-.....| |+|=-++.. +| .+.+.|++- +.+.. ... +.
T Consensus 99 ~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ 178 (444)
T COG1160 99 PADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDP 178 (444)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78999999998539988999976667304564899986478982684255356989999999975677433444356775
Q ss_pred CCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 73046104555543101001233125765200
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
.+|+++|-+|-=.-|++.++ +|-+-.+++|
T Consensus 179 ikiaiiGrPNvGKSsLiN~i--lgeeR~Iv~~ 208 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAI--LGEERVIVSD 208 (444)
T ss_pred EEEEEEECCCCCCHHHHHHH--CCCCEEEECC
T ss_conf 08999927878705888775--0682598459
No 255
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=31.31 E-value=38 Score=14.64 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCH-------HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 17844589999999999999999665236665443798799994288835-------78999989863475433332100
Q gi|255764473|r 8 FADLSNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTR-------TRVSFEVAMKHLGGDTIFLSGSE 80 (306)
Q Consensus 8 ~l~~~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StR-------TR~SFe~A~~~LG~~~~~~~~~~ 80 (306)
|....+|+..-+..|++ + +-.+..++-+|.-| +-..+..-|.+.|..+... .
T Consensus 5 f~Gt~~fs~~~L~~L~~------~------------~~~i~~Vvt~pdk~~gR~~k~~~~~v~~~a~~~~i~~~~p--~- 63 (309)
T PRK00005 5 FMGTPEFAVPSLKALLE------S------------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQP--E- 63 (309)
T ss_pred EECCCHHHHHHHHHHHH------C------------CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEC--C-
T ss_conf 98898899999999997------8------------9947999929998668999798998999999869938835--7-
Q ss_pred CCCCCCCCHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCCCCCEECCC-C-----CCCHHHH-HHH
Q ss_conf 00123210799999753-0010111210132006776301244124043-3-----3202467-876
Q gi|255764473|r 81 MQLGRAETIGDTAKVLS-RYVDAIVMRTTNHSRLLELTEYATVPVINAL-T-----DNTHPCQ-IIA 139 (306)
Q Consensus 81 ss~~kgEsl~Dt~~~ls-~~~D~iviR~~~~~~~~~~~~~~~vpvINa~-~-----~~~HPtQ-aL~ 139 (306)
+++ .+ |....+. .-.|++|+=....-...++-+....-.||-= + ...+|-| ||+
T Consensus 64 -~~~-~~---~~~~~l~~~~~Dl~vv~~~g~iip~~~l~~~~~g~iN~H~SlLP~yRG~aPi~~ail 125 (309)
T PRK00005 64 -SLR-DP---EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQRAII 125 (309)
T ss_pred -CCC-CH---HHHHHHHHCCCCEEEEEEHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf -799-99---999999841999999975234334999827887859831544756567575789987
No 256
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=31.28 E-value=32 Score=15.14 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=44.7
Q ss_pred CCEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHH
Q ss_conf 41240433-320246787655766420013367730461045555431010012331257652000
Q gi|255764473|r 122 VPVINALT-DNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 122 vpvINa~~-~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|=|.+.+ ..-|.+..+.|...+++....-+.++++++|-+. +.--+...++++|.+++++...
T Consensus 117 ~p~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGgG~-ig~E~A~~l~~~G~~Vtiv~~~ 181 (443)
T PRK09564 117 IPPIKNINLENVYTLRSMEDGLALKKLLKKKEIKRIVIIGAGF-IGLEVVEAAKKLGKNVRIIQLE 181 (443)
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 6998875666656765789999999976512796599999709-9999999998669889999957
No 257
>KOG3892 consensus
Probab=31.20 E-value=39 Score=14.62 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCCCEECCCCCCCHHHHHHH----H-HHHHHHHCCCCCCCCEEEE
Q ss_conf 124412404333202467876----5-5766420013367730461
Q gi|255764473|r 119 YATVPVINALTDNTHPCQIIA----D-IMTFEEHRGSVKGKLFSWS 159 (306)
Q Consensus 119 ~~~vpvINa~~~~~HPtQaL~----D-~~Ti~e~~g~l~~~~i~~v 159 (306)
+..=|+||+.-...||-|-+. | +-++.+.+|.+++.+|.-.
T Consensus 142 HlEGPFIs~~KrG~HPE~~i~s~~~~~~~~l~~tYGsleni~IvTl 187 (407)
T KOG3892 142 HLEGPFISREKRGAHPEAHIRSFEADAFQDLLATYGSLENIRIVTL 187 (407)
T ss_pred ECCCCCCCHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 3137844743147997998730586578889987186343589994
No 258
>PRK06198 short chain dehydrogenase; Provisional
Probab=31.09 E-value=20 Score=16.46 Aligned_cols=20 Identities=10% Similarity=-0.160 Sum_probs=12.7
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|+...+...|.+++-++|-
T Consensus 169 kslA~e~a~~gIrVNaI~PG 188 (268)
T PRK06198 169 RNVAYALLRNRIRVNGLNIG 188 (268)
T ss_pred HHHHHHHHHCCEEEEEEEEC
T ss_conf 99999970569499988757
No 259
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.96 E-value=39 Score=14.60 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=19.0
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 336773046104555543101001233125765
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNI 182 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~ 182 (306)
.+.|+++++.||+.- +.|+...+.-+|+++..
T Consensus 297 ~l~gkrvai~gd~d~-~~~l~~fL~ElG~~~~~ 328 (417)
T cd01966 297 YLGGKRVAIALEPDL-LAALSSFLAEMGAEIVA 328 (417)
T ss_pred HHCCCEEEEECCCHH-HHHHHHHHHHCCCEEEE
T ss_conf 856977999877169-99999999978998889
No 260
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.86 E-value=33 Score=15.04 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=37.6
Q ss_pred CCCCCCCEEEECCCC----------------CCCCCHHHCCCCCCEEEEEE-CHHCCCCCCCCHHHHHCCCCCCCCCCCH
Q ss_conf 133677304610455----------------55431010012331257652-0000132100002432013322213664
Q gi|255764473|r 149 GSVKGKLFSWSGDGN----------------NILHSLIEGAARFNYLLNIA-TPIGSEPRNEYLNWARNQGASVALFHDA 211 (306)
Q Consensus 149 g~l~~~~i~~vGd~~----------------~v~hS~i~~~~~~g~~v~~~-~P~~~~~~~~~~~~~~~~g~~i~~~~d~ 211 (306)
.+++|++|.+.+-+. .....+.+.+.+.|++|+++ +|....+|. .++.. .+....++
T Consensus 182 ~~l~gkkvLITaG~T~E~IDpVR~IsN~SSGkmG~aiA~~a~~~GA~VtlI~g~~~~~~p~-~v~~i-----~v~ta~eM 255 (392)
T PRK05579 182 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPA-GVKRI-----DVESAQEM 255 (392)
T ss_pred CCCCCCEEEEECCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCEEE-----EECCHHHH
T ss_conf 7767887999747724776762476657865899999999996799799996478778999-96799-----96759999
Q ss_pred HH----HCCCCCCCCC
Q ss_conf 66----3068733222
Q gi|255764473|r 212 VQ----AVKGAHCVFT 223 (306)
Q Consensus 212 ~e----al~~aD~V~~ 223 (306)
.+ .++++|++++
T Consensus 256 ~~~v~~~~~~~D~~I~ 271 (392)
T PRK05579 256 LDAVLAAAQKADIFIM 271 (392)
T ss_pred HHHHHHHCCCCCEEEE
T ss_conf 9999973544789999
No 261
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=30.62 E-value=39 Score=14.56 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=13.9
Q ss_pred CHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8445899999999999999996
Q gi|255764473|r 10 DLSNISSSNLSCIIEVAKKIKN 31 (306)
Q Consensus 10 ~~~dl~~~~i~~ll~~A~~~k~ 31 (306)
...-++.+++...++..+++-.
T Consensus 41 ~~~~~~~e~l~~~i~~~~~~t~ 62 (330)
T pfam03060 41 GAGYLTPDRLEKEIRKVKELTD 62 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 2776999999999999998648
No 262
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=30.61 E-value=39 Score=14.56 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHCCCCCCEECCCCCCCHHH--HHHHHHHHHHHHC------------------C-CCCCCCEEEECCCCCCCCCHHHC
Q ss_conf 7763012441240433320246--7876557664200------------------1-33677304610455554310100
Q gi|255764473|r 114 LELTEYATVPVINALTDNTHPC--QIIADIMTFEEHR------------------G-SVKGKLFSWSGDGNNILHSLIEG 172 (306)
Q Consensus 114 ~~~~~~~~vpvINa~~~~~HPt--QaL~D~~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~hS~i~~ 172 (306)
.+.++...|+|.|+-+...-++ .+++=++++.++. + .+.++++.++|-+ ++.......
T Consensus 77 ~~~a~~~gI~V~n~p~~~~~aVAE~~i~l~L~l~R~~~~~~~~~r~g~w~~~~~~~~~l~~~~~giiG~G-~iG~~va~~ 155 (313)
T pfam00389 77 LDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKGGPIGLELRGKTLGVIGGG-GIGGIGAAI 155 (313)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC-CHHHHHHHH
T ss_conf 9999979999998998772899999999999971230788999980876655655533689889999465-436999999
Q ss_pred CCCCCEEEEEECHH
Q ss_conf 12331257652000
Q gi|255764473|r 173 AARFNYLLNIATPI 186 (306)
Q Consensus 173 ~~~~g~~v~~~~P~ 186 (306)
+..||+.+....|.
T Consensus 156 ~~~~g~~v~~~d~~ 169 (313)
T pfam00389 156 AKALGMGVVAYDPY 169 (313)
T ss_pred HHHCCCEEEEEECC
T ss_conf 99769869999579
No 263
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.55 E-value=40 Score=14.55 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECC-CCHHHHHHCCCCCCEECCCCCC----C
Q ss_conf 89999898634754333321000012321079999975-3001011121013-2006776301244124043332----0
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTN-HSRLLELTEYATVPVINALTDN----T 132 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~-~~~~~~~~~~~~vpvINa~~~~----~ 132 (306)
--..+.++++.|-+++....... .|.-.+.++.+ +..+|++++=... .....+..+..++||+.-.... .
T Consensus 18 ~~gi~~~~~~~gy~~ll~~~~~~----~~~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~id~~~~~~~~ 93 (270)
T cd06296 18 LRGVEEAAAAAGYDVVLSESGRR----TSPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFVVVDPAGDPDAD 93 (270)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 99999999984998999979999----69999999999954999999906889999999999749999998788888889
Q ss_pred HHHHHHHHHHH----HHHHCCCCCCCCEEEECCC
Q ss_conf 24678765576----6420013367730461045
Q gi|255764473|r 133 HPCQIIADIMT----FEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 133 HPtQaL~D~~T----i~e~~g~l~~~~i~~vGd~ 162 (306)
-|+ +-.|-+. .-+++-..--.+|+|++..
T Consensus 94 ~~~-V~~Dn~~a~~~a~~~L~~~G~~~I~~i~~~ 126 (270)
T cd06296 94 VPS-VGATNWAGGLAATEHLLELGHRRIGFITGP 126 (270)
T ss_pred CCE-EEECHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 868-995769999999999998589728884599
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=30.31 E-value=20 Score=16.55 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988877178445899999999999999996652
Q gi|255764473|r 1 MMTYPKHFADLSNISSSNLSCIIEVAKKIKNSSE 34 (306)
Q Consensus 1 ~m~~~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~ 34 (306)
+|+.+|+|+.++-||...++.|.+.|.++.+...
T Consensus 29 ~~~T~r~L~~iKGlSEaKVdKi~EaA~K~~~~~f 62 (314)
T TIGR02238 29 IMTTKRELLKIKGLSEAKVDKIKEAASKIINVGF 62 (314)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9988888740378516779999999987641466
No 265
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=30.26 E-value=5.3 Score=20.26 Aligned_cols=134 Identities=13% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999665236665443798799994288835789999898634754333321000012321079999975
Q gi|255764473|r 17 SNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL 96 (306)
Q Consensus 17 ~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l 96 (306)
+++..|...+...+....+. + .++...|=-+|+.|.+.++-.+..++-|.+-.-....-...-|++.-+...-|
T Consensus 7 ~dF~~Le~r~d~t~~~~e~l-----~-~~t~~yLqPNP~~R~~~~~~~~~sK~rg~~k~~~~p~~~~~LG~~Mi~~G~d~ 80 (223)
T cd07614 7 DDFKEMEKKVDLTSKAVTEV-----L-ARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKEL 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----H-HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 89999999998999999999-----9-98799828985778999999889998623568899982658999999862427
Q ss_pred H---HCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCHHHHHH--HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 3---00101112101320067763012441240433320246787--655766420013367730461
Q gi|255764473|r 97 S---RYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTHPCQII--ADIMTFEEHRGSVKGKLFSWS 159 (306)
Q Consensus 97 s---~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~HPtQaL--~D~~Ti~e~~g~l~~~~i~~v 159 (306)
+ .|..+++-=+ .+...++..-.-.+.++.++--.|-+-+ .|+-+|..+++.+++.++.|=
T Consensus 81 g~~s~~G~aL~~~G---ea~~kla~~~~~~~~~~~~~fL~pL~~~l~~dlKei~~~RKkLe~rRLd~D 145 (223)
T cd07614 81 GDESNFGDALLDAG---ESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFD 145 (223)
T ss_pred CCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99983699999998---999999999999999999988889999998579999999998874656679
No 266
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=29.89 E-value=24 Score=15.99 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=57.3
Q ss_pred HHHHHHHHH-CC---CCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHH---HHCCCCCCCCCCCH
Q ss_conf 655766420-01---336773046104555543101001233125765200001321000024---32013322213664
Q gi|255764473|r 139 ADIMTFEEH-RG---SVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNW---ARNQGASVALFHDA 211 (306)
Q Consensus 139 ~D~~Ti~e~-~g---~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~---~~~~g~~i~~~~d~ 211 (306)
...+|+-.+ .| .++|++|++.|-.+....+++..+.+-|+++...+-..-..+.+.-.. .+.-.=++.....+
T Consensus 162 ~g~~tlvDklmGTalSLKGKTV~VTGASG~LG~aL~k~l~~~GAKVIalTs~~~~i~~~~~~~~~~~~~i~W~~G~E~~L 241 (410)
T PRK07424 162 CGTFTLVDKLMGTALSLKGKTVAVTGASGTLGQALLKELHQQGAKVIALTSNSDKIPLEINGEDLPVKTIHWQVGQEAAL 241 (410)
T ss_pred EEEEHHHHHHHCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHH
T ss_conf 42220255552101301686799954773778999999997799899993589865534466546712786432888898
Q ss_pred HHHCCCCCCCCCCCEE-ECCCC-----CHHHHHHCCCCCCCCHHHHHC
Q ss_conf 6630687332221000-00022-----013331001112336889962
Q gi|255764473|r 212 VQAVKGAHCVFTDTWI-SMNQE-----FKAREEHVFQPFQVNLSLMSM 253 (306)
Q Consensus 212 ~eal~~aD~V~~~~~~-~~~~~-----~~~~~~~~~~~y~i~~~~l~~ 253 (306)
++.++..|+++-.-=. ..++. .+.-+.+.+..|++-+-+++.
T Consensus 242 ~~~L~kiDILILNHGIN~~g~~~~~~i~~S~EINalS~~rll~lF~~~ 289 (410)
T PRK07424 242 AELLEKVDILVINHGINVHGERTPEAINKSYEVNTFSAWRLMELFLTT 289 (410)
T ss_pred HHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888864689988488785666597898876747877799999999999
No 267
>PRK07680 late competence protein ComER; Validated
Probab=29.89 E-value=35 Score=14.91 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=15.5
Q ss_pred CCEEEEEECCC---CHHHHHHCC--CCCCEECCCCC
Q ss_conf 10111210132---006776301--24412404333
Q gi|255764473|r 100 VDAIVMRTTNH---SRLLELTEY--ATVPVINALTD 130 (306)
Q Consensus 100 ~D~iviR~~~~---~~~~~~~~~--~~vpvINa~~~ 130 (306)
.|++++=..++ ..+.++..+ .+..||+-.-|
T Consensus 63 ~dvIiLaVKPq~~~~vl~~i~~~~~~~~~iISi~AG 98 (273)
T PRK07680 63 SELIFICVKPLDIYPLLKKLAPHFSDEKCLVSITSP 98 (273)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 998999648888999999988634788489995588
No 268
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=29.87 E-value=41 Score=14.48 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 1336773046104555543101001233125765200
Q gi|255764473|r 149 GSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 149 g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
..+.|+++++.||.. .+.++...+..+|+++..+.-
T Consensus 268 ~~l~gkrv~v~g~~~-~~~~l~~~L~ElG~~v~~~~~ 303 (398)
T pfam00148 268 EYLAGKRVAIYGDPD-LAWGLARFLEELGMEVVAVGT 303 (398)
T ss_pred HHHCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEE
T ss_conf 873797799988845-799999999987997999996
No 269
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.71 E-value=37 Score=14.74 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=11.2
Q ss_pred CCEEEEEECCCCHHHHHHCCCC
Q ss_conf 1011121013200677630124
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEYAT 121 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~~~ 121 (306)
.|+|..=..+.-.+.+++....
T Consensus 110 ~~~IlASNTSsL~it~iA~~~~ 131 (503)
T PRK08268 110 DDCILATNTSSLSITAIAAALK 131 (503)
T ss_pred CCCEEEECCCCCCHHHHHHHCC
T ss_conf 8857984177677999997469
No 270
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.61 E-value=28 Score=15.52 Aligned_cols=72 Identities=8% Similarity=-0.055 Sum_probs=33.1
Q ss_pred CCCCCCCEEEECC-----CCCCCCCHH----HCCCCC-CEEEEEECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 1336773046104-----555543101----001233-125765200001321000024320133222136646630687
Q gi|255764473|r 149 GSVKGKLFSWSGD-----GNNILHSLI----EGAARF-NYLLNIATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGA 218 (306)
Q Consensus 149 g~l~~~~i~~vGd-----~~~v~hS~i----~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~a 218 (306)
+.+++.+|++.|= .+.+..|-. +.+... +.++.+.-|.- ......-.......++.++++++
T Consensus 316 ~~~~~~~I~iLGlafK~~tdD~R~Sps~~ii~~L~~~~~a~v~~~DP~v--------~~~~~~~~~~~~~~~~~~~~~~a 387 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAQLIAQWHSGETLVVEPNI--------HQLPKKLDGLVTLASLDEALATA 387 (415)
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC--------CHHHHHHCCCCEECCHHHHHHCC
T ss_conf 6766877999976666999741358599999999973898399989988--------73357633871336799998279
Q ss_pred CCCC-CCCEEE
Q ss_conf 3322-210000
Q gi|255764473|r 219 HCVF-TDTWIS 228 (306)
Q Consensus 219 D~V~-~~~~~~ 228 (306)
|+|. .+.|..
T Consensus 388 D~vii~T~h~e 398 (415)
T PRK11064 388 DVLVMLVDHSQ 398 (415)
T ss_pred CEEEEECCCHH
T ss_conf 99999249866
No 271
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.56 E-value=41 Score=14.45 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCC--CCCHHH---HHHHHHHH----------------
Q ss_conf 321079999975300101112101320067763012441240433--320246---78765576----------------
Q gi|255764473|r 85 RAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALT--DNTHPC---QIIADIMT---------------- 143 (306)
Q Consensus 85 kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~--~~~HPt---QaL~D~~T---------------- 143 (306)
.|-+++|..++=+....+++-+.........+.+...+|.+...- |-..=. ..|++++=
T Consensus 213 ggt~~~~i~~~~~A~~ni~l~~~~~~~~a~~Le~~~giP~~~~~~P~G~~~Td~flr~l~~~~g~~~~~~i~~er~r~~d 292 (435)
T cd01974 213 GGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLNMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVD 292 (435)
T ss_pred CCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99869999975248499997777899999999998599869607764569999999999998589946999999999999
Q ss_pred -HHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf -6420013367730461045555431010012331257652
Q gi|255764473|r 144 -FEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIA 183 (306)
Q Consensus 144 -i~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~ 183 (306)
+.+....+.|+++++.||+. .+.++...+.-+|+++..+
T Consensus 293 ~~~d~~~~l~gkrvai~g~~~-~~~~l~~~l~elG~~~~~v 332 (435)
T cd01974 293 AMTDSHQYLHGKKFALYGDPD-FLIGLTSFLLELGMEPVHV 332 (435)
T ss_pred HHHHHHHHHCCCEEEEECCHH-HHHHHHHHHHHCCCEEEEE
T ss_conf 999998874296799988828-9999999999889978999
No 272
>PRK10433 putative RNA methyltransferase; Provisional
Probab=29.20 E-value=23 Score=16.05 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=14.5
Q ss_pred EEEECCCCCHHHHHH-HHHHHHCCCCCCCC
Q ss_conf 999428883578999-98986347543333
Q gi|255764473|r 48 AMIFEKPSTRTRVSF-EVAMKHLGGDTIFL 76 (306)
Q Consensus 48 ~~lF~e~StRTR~SF-e~A~~~LG~~~~~~ 76 (306)
..++.||+.=-=+.+ .-|++.+|..-+.+
T Consensus 4 ~iVLvep~~p~NIGa~ARaMkN~G~~~L~L 33 (228)
T PRK10433 4 TIILVAPARAENIGAAARAMKTMGFSELRI 33 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 999967999751999999997289981699
No 273
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=29.15 E-value=28 Score=15.52 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=40.0
Q ss_pred CCCCEEEECC-C-CCCCCCHHHCCCCCCEE-EEEECHHCCCCCCCCHHHH---HCCCCCCCCCCCHHHHCC--CCCCCCC
Q ss_conf 6773046104-5-55543101001233125-7652000013210000243---201332221366466306--8733222
Q gi|255764473|r 152 KGKLFSWSGD-G-NNILHSLIEGAARFNYL-LNIATPIGSEPRNEYLNWA---RNQGASVALFHDAVQAVK--GAHCVFT 223 (306)
Q Consensus 152 ~~~~i~~vGd-~-~~v~hS~i~~~~~~g~~-v~~~~P~~~~~~~~~~~~~---~~~g~~i~~~~d~~eal~--~aD~V~~ 223 (306)
...+|..|-. + +|| =|...++.-||++ +.++.|..-.+.++..-.| +.-=....+++|+.|++. +.|+|..
T Consensus 3 ~~I~ivLVep~~~gNv-G~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~~~vg 81 (253)
T TIGR00050 3 ENISIVLVEPKHSGNV-GSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCDLVVG 81 (253)
T ss_pred CEEEEEEEECCCCCCH-HHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCEEEE
T ss_conf 1247888617998644-699999876270012564662255687899987202786587547426799987319970786
Q ss_pred CC
Q ss_conf 10
Q gi|255764473|r 224 DT 225 (306)
Q Consensus 224 ~~ 225 (306)
++
T Consensus 82 Ts 83 (253)
T TIGR00050 82 TS 83 (253)
T ss_pred CC
T ss_conf 26
No 274
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.99 E-value=42 Score=14.38 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEEC
Q ss_conf 21079999975300101112101320067763012441240
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVIN 126 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvIN 126 (306)
|-++.|..+.-..++.++..|-.......-+.+....|.+.
T Consensus 203 ga~~~dl~~L~~Ad~Nv~lYrE~g~~~a~~Ler~fg~Py~~ 243 (510)
T CHL00076 203 GGSVEDLKNLPKAWFNLVPYREVGLMTAKYLEKEFGMPYVS 243 (510)
T ss_pred CCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99988884055041888354877899999998873898142
No 275
>PRK10717 cysteine synthase A; Provisional
Probab=28.98 E-value=35 Score=14.91 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=33.1
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 942888357899998986347543333210000123210799999753001011121
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMR 106 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR 106 (306)
+.+=+|-=|=.+...+|+.+|..++.+-+...+..|- +.++.++ .+++.+.
T Consensus 67 vveaSSGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~----~~i~~~G--AeVi~v~ 117 (334)
T PRK10717 67 IVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKK----DLLRALG--AELVEVP 117 (334)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHH----HHHHHCC--CEEEECC
T ss_conf 9982797389999999998099659995685459999----9999759--8399768
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.78 E-value=32 Score=15.20 Aligned_cols=71 Identities=25% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCC---CCHHHHCCC-CCCCCC
Q ss_conf 0133677304610455554310100123312576520000132100002432013322213---664663068-733222
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALF---HDAVQAVKG-AHCVFT 223 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~---~d~~eal~~-aD~V~~ 223 (306)
.+--.|.+|+++|-+ .+.|.-++.+..+|+++..++- .++..+.+++.|....+. .|..+++++ +|+++.
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCEEEE
T ss_conf 389999899998774-8999999999986996999957-----8779999998488289976781166776734739999
Q ss_pred C
Q ss_conf 1
Q gi|255764473|r 224 D 224 (306)
Q Consensus 224 ~ 224 (306)
.
T Consensus 236 t 236 (339)
T COG1064 236 T 236 (339)
T ss_pred C
T ss_conf 8
No 277
>KOG1805 consensus
Probab=28.72 E-value=42 Score=14.35 Aligned_cols=12 Identities=0% Similarity=0.318 Sum_probs=5.6
Q ss_pred HCCHHHHHHHHH
Q ss_conf 589999999999
Q gi|255764473|r 13 NISSSNLSCIIE 24 (306)
Q Consensus 13 dl~~~~i~~ll~ 24 (306)
.|++++..+++.
T Consensus 669 ~LN~dQr~A~~k 680 (1100)
T KOG1805 669 RLNNDQRQALLK 680 (1100)
T ss_pred HCCHHHHHHHHH
T ss_conf 318899999999
No 278
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=28.52 E-value=43 Score=14.33 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=39.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 379879999428883578999989863475433332100001232107999997530010111210
Q gi|255764473|r 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRT 107 (306)
Q Consensus 42 l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~ 107 (306)
-.|+ .+.+=.|--|=.+....|..+|-+++..=|..+|..|...+ + +....++....
T Consensus 60 ~pG~---tIVE~TSGNTGIaLA~vaa~~Gy~~~ivmP~~~S~er~~~l----~--a~GAevi~t~~ 116 (300)
T COG0031 60 KPGG---TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLL----R--ALGAEVILTPG 116 (300)
T ss_pred CCCC---EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH----H--HCCCEEEECCC
T ss_conf 9999---89970897279999999998199289995898999999999----9--82998998379
No 279
>KOG3420 consensus
Probab=28.36 E-value=23 Score=16.16 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC---CCCCHHHCCCCCCEE
Q ss_conf 24678765576642001336773046104555---543101001233125
Q gi|255764473|r 133 HPCQIIADIMTFEEHRGSVKGKLFSWSGDGNN---ILHSLIEGAARFNYL 179 (306)
Q Consensus 133 HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~---v~hS~i~~~~~~g~~ 179 (306)
-|--|-.=++||.+..|+++|+++.=+|.+-. ++-|....-..+|++
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfD 78 (185)
T KOG3420 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFD 78 (185)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 67899999999986201204746225247611567775057873378640
No 280
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=28.25 E-value=41 Score=14.42 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCCCCCCC--CCCCCC--CCCCCHHHHH-----HHHHHCCCEEEEEECCCCHHHHHHCC
Q ss_conf 999989863475433332--100001--2321079999-----97530010111210132006776301
Q gi|255764473|r 60 VSFEVAMKHLGGDTIFLS--GSEMQL--GRAETIGDTA-----KVLSRYVDAIVMRTTNHSRLLELTEY 119 (306)
Q Consensus 60 ~SFe~A~~~LG~~~~~~~--~~~ss~--~kgEsl~Dt~-----~~ls~~~D~iviR~~~~~~~~~~~~~ 119 (306)
-||-.+.++-|..+...+ ....+. .....+.|.. .......|++++=.|-......+.+.
T Consensus 16 ~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aDlVivavPi~~~~~~l~~l 84 (279)
T COG0287 16 GSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLKEL 84 (279)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999997698479972477467787766358530100115554135699899957788999999986
No 281
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.24 E-value=43 Score=14.30 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCCCCCEECCCCC---CCHHH
Q ss_conf 999989863475433332100001232107999997530-01011121013200677630124412404333---20246
Q gi|255764473|r 60 VSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR-YVDAIVMRTTNHSRLLELTEYATVPVINALTD---NTHPC 135 (306)
Q Consensus 60 ~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~-~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~---~~HPt 135 (306)
..-|-++++.|..++..++. .-++..+.+.. -+|+++.+..++.....+ +..++|++-.+.. ...|+
T Consensus 18 ~GIe~~a~~~Gy~~il~~~~--------~~~~~~~~l~~~~VDGiI~~~~~~~~~~~l-~~~~iPvV~i~~~~~~~~~~~ 88 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPR--------GLQEPLRWLKDWQGDGIIARIDDPEMAEAL-QKLGIPVVDVSGSREKPGIPR 88 (265)
T ss_pred HHHHHHHHHCCCEEEEECCC--------CHHHHHHHHHHCCCCEEEEECCCHHHHHHH-HHCCCCEEEECCCCCCCCCCE
T ss_conf 99999999749989998382--------348999999837988899727998999999-847995999898888899998
Q ss_pred HHHHHHHH----HHHHCCCCCCCCEEEECCCC
Q ss_conf 78765576----64200133677304610455
Q gi|255764473|r 136 QIIADIMT----FEEHRGSVKGKLFSWSGDGN 163 (306)
Q Consensus 136 QaL~D~~T----i~e~~g~l~~~~i~~vGd~~ 163 (306)
+..|-+. .-++.-..--.+|+++|...
T Consensus 89 -V~~Dn~~~~~~a~~~L~~~Ghr~I~~ig~~~ 119 (265)
T cd01543 89 -VTTDNAAIGRMAAEHFLERGFRHFAFYGLPG 119 (265)
T ss_pred -EECCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf -9629999999999999986997499989998
No 282
>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain. Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=28.20 E-value=43 Score=14.29 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99665236665443798799994288835789999898634754333321000012321079999975300101112101
Q gi|255764473|r 29 IKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTT 108 (306)
Q Consensus 29 ~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~ 108 (306)
++.........+|+.-.+.+.+|-+|--. .-+...|-+..|..
T Consensus 8 m~~~~~~R~~~qP~~~~~~GS~FKNP~~~-------------------------------------~Ag~LIe~~G~kG~ 50 (103)
T pfam02873 8 MKKIRQTRKSTQPYKFPNAGSTFKNPEGF-------------------------------------AAGWLIEEAGLKGY 50 (103)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCC-------------------------------------CHHHHHHHHCCCCC
T ss_conf 99999986869969999872785590997-------------------------------------39999999687988
Q ss_pred CCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHH--HHHHCC
Q ss_conf 32006776301244124043332024678765576--642001
Q gi|255764473|r 109 NHSRLLELTEYATVPVINALTDNTHPCQIIADIMT--FEEHRG 149 (306)
Q Consensus 109 ~~~~~~~~~~~~~vpvINa~~~~~HPtQaL~D~~T--i~e~~g 149 (306)
..+....-.+++.+ ++|.++..+--...|++... .++++|
T Consensus 51 ~~G~a~vS~kHanf-ivN~g~ata~di~~l~~~v~~~V~~~~g 92 (103)
T pfam02873 51 QIGGAQVSEKHANF-IINTGNATAEDVVDLIRHVRQTVFEKFG 92 (103)
T ss_pred CCCCEEEEECCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 55998896256718-9968998999999999999999999889
No 283
>KOG0523 consensus
Probab=28.14 E-value=43 Score=14.29 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=22.9
Q ss_pred CEEEECCCCCCCCCHH--HCCCCCCEEEEEECHHCCCCCC--CCHHHHHCCCCCCCCCC
Q ss_conf 3046104555543101--0012331257652000013210--00024320133222136
Q gi|255764473|r 155 LFSWSGDGNNILHSLI--EGAARFNYLLNIATPIGSEPRN--EYLNWARNQGASVALFH 209 (306)
Q Consensus 155 ~i~~vGd~~~v~hS~i--~~~~~~g~~v~~~~P~~~~~~~--~~~~~~~~~g~~i~~~~ 209 (306)
+|+.+|-++-|-.++- +.+...|.+++++.|..+.|-+ .....++.....+++..
T Consensus 507 dV~LiG~Gs~v~~cl~AA~~L~e~gi~vrVvd~~~~kplD~~li~~~~q~~~~ri~v~e 565 (632)
T KOG0523 507 DVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLE 565 (632)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 77999265899999999999986496389954532000235877655135541799804
No 284
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=28.11 E-value=35 Score=14.88 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCHHHHHHHHH-HCCCEEEEEEC-CCCHHHHHHCCCCCCEECCC
Q ss_conf 789999898634754333--3210000123210799999753-00101112101-32006776301244124043
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIF--LSGSEMQLGRAETIGDTAKVLS-RYVDAIVMRTT-NHSRLLELTEYATVPVINAL 128 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~--~~~~~ss~~kgEsl~Dt~~~ls-~~~D~iviR~~-~~~~~~~~~~~~~vpvINa~ 128 (306)
||.+--..|+++|.-++- |=-++++ ++-..+.+. ...|++-+... -...+.++.+..++|||-+|
T Consensus 78 Tk~~~i~~Ak~~gl~tIqR~FliDS~a------l~~~~~~i~~~~PD~IEilPG~~p~~i~~i~~~~~~PiIAGG 146 (174)
T pfam04309 78 TKSKVIKKAKKLGLPAIQRLFLLDSIA------LERSIEQIEKLEPDFIEVLPGVMPKVIQEITERTNIPIIAGG 146 (174)
T ss_pred CCHHHHHHHHHCCCEEEEEEEEEEHHH------HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 889999999987992897764341778------999999986479899999866699999999974799999767
No 285
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.02 E-value=23 Score=16.13 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=6.8
Q ss_pred CCEEEEEECCC
Q ss_conf 10111210132
Q gi|255764473|r 100 VDAIVMRTTNH 110 (306)
Q Consensus 100 ~D~iviR~~~~ 110 (306)
.|++++=..++
T Consensus 62 ~dvi~LaVKP~ 72 (255)
T PRK06476 62 SDVVFLAVRPQ 72 (255)
T ss_pred CCEEEEEECHH
T ss_conf 88788861788
No 286
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=27.96 E-value=43 Score=14.29 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHH-HCCCEEEEE
Q ss_conf 210799999753-001011121
Q gi|255764473|r 86 AETIGDTAKVLS-RYVDAIVMR 106 (306)
Q Consensus 86 gEsl~Dt~~~ls-~~~D~iviR 106 (306)
.|.++...+.+- ..+|++-+-
T Consensus 94 ~~a~~nA~rlmke~GadaVKlE 115 (261)
T pfam02548 94 EQALRNAARLMKEAGADAVKLE 115 (261)
T ss_pred HHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999999985499989978
No 287
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=27.77 E-value=44 Score=14.25 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHCCCEEEEEECCCCH---HHHHHCCCCCCEECCCCC-
Q ss_conf 357899998986347543333210000123210799999-753001011121013200---677630124412404333-
Q gi|255764473|r 56 TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK-VLSRYVDAIVMRTTNHSR---LLELTEYATVPVINALTD- 130 (306)
Q Consensus 56 tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~-~ls~~~D~iviR~~~~~~---~~~~~~~~~vpvINa~~~- 130 (306)
.+-.-..+.++++.|.+++..+.... .|.-.+.++ .++..+|++++-..+... ..+.+...++|||--...
T Consensus 15 ~~~~~gi~~~a~~~Gy~~~i~~s~~~----~~~e~~~i~~l~~~~vdgiI~~p~~~~~~~~~i~~~~~~~iPvV~id~~~ 90 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQND----AAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDREA 90 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999999999975998999819999----99999999999964999899756542124699999997699689963666
Q ss_pred -CCHH-HHHHHHHHH
Q ss_conf -2024-678765576
Q gi|255764473|r 131 -NTHP-CQIIADIMT 143 (306)
Q Consensus 131 -~~HP-tQaL~D~~T 143 (306)
...+ +++..|-+.
T Consensus 91 ~~~~~~~~V~~d~~~ 105 (268)
T cd06323 91 NGGEVVSQIASDNVA 105 (268)
T ss_pred CCCCCCCEEEECHHH
T ss_conf 788866189853799
No 288
>PRK06128 oxidoreductase; Provisional
Probab=27.75 E-value=27 Score=15.68 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=37.8
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEEEC--CCCHHHH
Q ss_conf 544379879999428883578999989863475433332100001232107999997530-0101112101--3200677
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR-YVDAIVMRTT--NHSRLLE 115 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~-~~D~iviR~~--~~~~~~~ 115 (306)
+-.|+||++ ++ -=.|.-==.+...+..+-|++|+.-+-.. ..+..+++.+.+.. ...++.+... +...+..
T Consensus 50 ~grL~GKvA-lV-TGgssGIG~AiA~~lA~eGA~Vvi~~~~~----~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~~ 123 (300)
T PRK06128 50 FGRLQGRKA-LI-TGADSGIGRATAIAFAREGADIVLNYLPE----EEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCRQ 123 (300)
T ss_pred CCCCCCCEE-EE-ECCCCHHHHHHHHHHHHCCCEEEEECCCC----CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 887899958-99-17366999999999998699999942995----5678999999999659818999747899999999
Q ss_pred HH-----C--CCCCCEECCCCC
Q ss_conf 63-----0--124412404333
Q gi|255764473|r 116 LT-----E--YATVPVINALTD 130 (306)
Q Consensus 116 ~~-----~--~~~vpvINa~~~ 130 (306)
+. + ..++-|-|||..
T Consensus 124 ~v~~~~~~~G~iDiLVNNAG~~ 145 (300)
T PRK06128 124 LVERAVKELGGLDILVNIAGKQ 145 (300)
T ss_pred HHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999999809999899899997
No 289
>PRK10481 hypothetical protein; Provisional
Probab=27.72 E-value=36 Score=14.86 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=18.1
Q ss_pred CCCCCCCHHHCCCCCCEEEEEECHHCCCC
Q ss_conf 55554310100123312576520000132
Q gi|255764473|r 162 GNNILHSLIEGAARFNYLLNIATPIGSEP 190 (306)
Q Consensus 162 ~~~v~hS~i~~~~~~g~~v~~~~P~~~~~ 190 (306)
+.++.++++.++.- |..+.++.|..-+.
T Consensus 114 P~ril~~lV~ai~~-~~~lGVvvP~~eQ~ 141 (224)
T PRK10481 114 PSRILPPLVAAIVD-GHQLGVIVPVEEQL 141 (224)
T ss_pred HHHHHHHHHHHHCC-CCEEEEEECCHHHH
T ss_conf 58866899998568-98699996278999
No 290
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.71 E-value=44 Score=14.24 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCEEEEEEC-CCCHHHHHHCCCCCCEECCCCC-CCHHH
Q ss_conf 8999989863475433332100001232107999997-5300101112101-3200677630124412404333-20246
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKV-LSRYVDAIVMRTT-NHSRLLELTEYATVPVINALTD-NTHPC 135 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~-ls~~~D~iviR~~-~~~~~~~~~~~~~vpvINa~~~-~~HPt 135 (306)
--..|..+.+.|-+++..+... ..|.-++..+. ++..+|++++=.. .+....+......+||+..+.. ..+|+
T Consensus 18 ~~~i~~~~~~~gy~~~i~~s~~----~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~ 93 (265)
T cd06285 18 YEGIEEAAAERGYSTFVANTGD----NPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTRRGVPFVLVLRHAGTSPA 93 (265)
T ss_pred HHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCE
T ss_conf 9999999998699899997999----989999999999956999999768879989999999679978998556899997
Q ss_pred HHHHHHHH----HHHHCCCCCCCCEEEECCCC
Q ss_conf 78765576----64200133677304610455
Q gi|255764473|r 136 QIIADIMT----FEEHRGSVKGKLFSWSGDGN 163 (306)
Q Consensus 136 QaL~D~~T----i~e~~g~l~~~~i~~vGd~~ 163 (306)
-. .|-+. +-+++-..-..+|++++...
T Consensus 94 v~-~dn~~~~~~~~~~Li~~G~~~i~~l~~~~ 124 (265)
T cd06285 94 VT-GDDVLGGRLATRHLLDLGHRRIAVLAGPD 124 (265)
T ss_pred EE-ECHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 98-77799999999999983886587547887
No 291
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=27.55 E-value=42 Score=14.37 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHC-CCEEEEE--ECCCCHHHHHHCCCCCC---EECCCC
Q ss_conf 999975300-1011121--01320067763012441---240433
Q gi|255764473|r 91 DTAKVLSRY-VDAIVMR--TTNHSRLLELTEYATVP---VINALT 129 (306)
Q Consensus 91 Dt~~~ls~~-~D~iviR--~~~~~~~~~~~~~~~vp---vINa~~ 129 (306)
|.+.-+..+ .|++++= .|-+-....+.+.+..| ||..|+
T Consensus 111 ~i~~~i~~~~p~aiiivvsNPvDv~t~~~~k~sg~p~~rViG~Gt 155 (322)
T PTZ00082 111 EVGENIKKYCPNAFVIVITNPLDVMVQLLLKVSGFPKNKVVGMGG 155 (322)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999998740998359974892699999999976898224896412
No 292
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=27.43 E-value=45 Score=14.21 Aligned_cols=131 Identities=12% Similarity=0.228 Sum_probs=51.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEEECCC----CHHHHH
Q ss_conf 9999428883578999989863475433-----3321000012321079999975300-10111210132----006776
Q gi|255764473|r 47 LAMIFEKPSTRTRVSFEVAMKHLGGDTI-----FLSGSEMQLGRAETIGDTAKVLSRY-VDAIVMRTTNH----SRLLEL 116 (306)
Q Consensus 47 i~~lF~e~StRTR~SFe~A~~~LG~~~~-----~~~~~~ss~~kgEsl~Dt~~~ls~~-~D~iviR~~~~----~~~~~~ 116 (306)
|+.+|.+.|.--+..|+.|+.+.-...- .+.+..-.+....|+.=+-++-+.+ ..+.+|=+|.+ ..+..+
T Consensus 2 IGaiF~~~~~~~~~Af~~Av~~vN~~~~~l~~~~L~~~~~~~~~~dsf~~~~~~C~ll~~gV~AI~Gp~~~~~~~~v~si 81 (324)
T cd06368 2 IGAIFDEDARQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSANTVQSI 81 (324)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
T ss_conf 38894689979999999999998568775788189999995336876899999999875495899988975689999998
Q ss_pred HCCCCCCEECCC-C--------C-CCHH-----HHHHHHHHHHHHHCCCCCCCCEEEECCCC-CCCCCHHHCCCCCCEEE
Q ss_conf 301244124043-3--------3-2024-----67876557664200133677304610455-55431010012331257
Q gi|255764473|r 117 TEYATVPVINAL-T--------D-NTHP-----CQIIADIMTFEEHRGSVKGKLFSWSGDGN-NILHSLIEGAARFNYLL 180 (306)
Q Consensus 117 ~~~~~vpvINa~-~--------~-~~HP-----tQaL~D~~Ti~e~~g~l~~~~i~~vGd~~-~v~hS~i~~~~~~g~~v 180 (306)
+....||.|--. + . ..|| .||++|+..-.. ++...+.|-.|.+ ..+.-++..+..-+..+
T Consensus 82 ~~~~~vP~i~~~~~~~~~~~~~~~~~~p~~~~l~~Ai~dli~~~~----W~~~~~iYd~d~gl~~Lq~ll~~~~~~~~~i 157 (324)
T cd06368 82 CDALEIPHITTSWSPNPKPRQFTINLYPSMRDLSDALLDLIKYFG----WRKFVYIYDSDEGLLRLQELLDALSPKGIQV 157 (324)
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCC----CCEEEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 633268558822788877554651101587889999999999679----8489999957720667999998653259779
Q ss_pred E
Q ss_conf 6
Q gi|255764473|r 181 N 181 (306)
Q Consensus 181 ~ 181 (306)
.
T Consensus 158 ~ 158 (324)
T cd06368 158 T 158 (324)
T ss_pred E
T ss_conf 9
No 293
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=27.41 E-value=45 Score=14.20 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=50.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCC------CCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEECCCCHHHHH
Q ss_conf 879999428883578999989863475------433332100001232107999997530010--111210132006776
Q gi|255764473|r 45 KVLAMIFEKPSTRTRVSFEVAMKHLGG------DTIFLSGSEMQLGRAETIGDTAKVLSRYVD--AIVMRTTNHSRLLEL 116 (306)
Q Consensus 45 k~i~~lF~e~StRTR~SFe~A~~~LG~------~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D--~iviR~~~~~~~~~~ 116 (306)
-.+.+++=+..-.-+-..+.-++.++. +++.++..+..-+ .+.+.|.+.++|.+.+ ++++|...+.....+
T Consensus 20 ~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d-~~~l~de~~t~slF~~~rlI~i~~~~d~~~~~l 98 (343)
T PRK06585 20 IRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDAD-PARLEDEANTISLFGGRRLIWVRAGGKSLAAAL 98 (343)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCC-HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
T ss_conf 6589996387647999999999972556678741577479988339-999999984768768984899726872569999
Q ss_pred HCCC------CCCEECCCC
Q ss_conf 3012------441240433
Q gi|255764473|r 117 TEYA------TVPVINALT 129 (306)
Q Consensus 117 ~~~~------~vpvINa~~ 129 (306)
..+. .+-||.|++
T Consensus 99 ~~~l~~~~~~~~lIi~a~~ 117 (343)
T PRK06585 99 KALLAEPPGDAFIVIEAGD 117 (343)
T ss_pred HHHHHCCCCCEEEEEECCC
T ss_conf 9998178998289997389
No 294
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=27.38 E-value=45 Score=14.20 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCHHHHHHHH-HHCCCEEEEEECCCCHHHHHH-CCC-CCCEECCCCC---CCHHHHHHHHH-HHHHHHCCCCCCCCE---
Q ss_conf 1079999975-300101112101320067763-012-4412404333---20246787655-766420013367730---
Q gi|255764473|r 87 ETIGDTAKVL-SRYVDAIVMRTTNHSRLLELT-EYA-TVPVINALTD---NTHPCQIIADI-MTFEEHRGSVKGKLF--- 156 (306)
Q Consensus 87 Esl~Dt~~~l-s~~~D~iviR~~~~~~~~~~~-~~~-~vpvINa~~~---~~HPtQaL~D~-~Ti~e~~g~l~~~~i--- 156 (306)
|..+.+.+.+ ..+.|++..-- +.+.... .|. ++|+|=-.++ ..+|. -.-.+ .|..+.. .+.-.-+
T Consensus 43 ~d~e~~v~~~~~~g~dav~~~~---Gi~~~~~~~y~~dvplivkl~~~t~l~~~~-~~~~~~~~ve~ai-~lgadAV~~~ 117 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTP---GIARSVHRGYAHDVPLIVKLNGSTSLSPDP-NDQVLVATVEDAI-RLGADAVGAT 117 (265)
T ss_pred CCHHHHHHHHHHCCCCEEEECH---HHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CCCEEEEEHHHHH-HCCCCEEEEE
T ss_conf 6999999999854899898467---588650755357767799964666567786-4311234098897-4787479999
Q ss_pred EEECC-CCC----CCCCHHHCCCCCCEEEEE-ECHHCCCC
Q ss_conf 46104-555----543101001233125765-20000132
Q gi|255764473|r 157 SWSGD-GNN----ILHSLIEGAARFNYLLNI-ATPIGSEP 190 (306)
Q Consensus 157 ~~vGd-~~~----v~hS~i~~~~~~g~~v~~-~~P~~~~~ 190 (306)
.++|- ..+ -+-.....+.++|+-+.. +.|.+-..
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9668762589999999999999870996499881358776
No 295
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=27.27 E-value=38 Score=14.65 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCEEEECCCCCCCCCHHHCCCC-CC-EEEEEECHHCCCCCCCCHHHHHCC-CCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 7304610455554310100123-31-257652000013210000243201-332221366466306873322210
Q gi|255764473|r 154 KLFSWSGDGNNILHSLIEGAAR-FN-YLLNIATPIGSEPRNEYLNWARNQ-GASVALFHDAVQAVKGAHCVFTDT 225 (306)
Q Consensus 154 ~~i~~vGd~~~v~hS~i~~~~~-~g-~~v~~~~P~~~~~~~~~~~~~~~~-g~~i~~~~d~~eal~~aD~V~~~~ 225 (306)
..++++|.+. .++-.++++.. ++ -++.+.++..-.. ..+....+.. +..+.-..+.+++++++|+|.+..
T Consensus 131 ~~laiIGaG~-qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 131 STLAIIGAGA-QARTQLEALKAVRDIREIRVYSRDPEAA-EAFAARLRKRGGEAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCHHHH-HHHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEEC
T ss_conf 5799988848-9999999999628961899976898999-99999987633865132368998861399899942
No 296
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.21 E-value=27 Score=15.69 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=11.3
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|+...+...|..++.++|-
T Consensus 167 r~lA~e~~~~gIrvN~V~PG 186 (247)
T PRK05565 167 KALAKELAPSGIRVNAIAPG 186 (247)
T ss_pred HHHHHHHHHHCEEEEEEEEC
T ss_conf 99999954309499999609
No 297
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=27.03 E-value=45 Score=14.16 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHCCCEEEEEECCCCHH---HHHHCCCCCCEECCCCCC-
Q ss_conf 57899998986347543333210000123210799999-7530010111210132006---776301244124043332-
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK-VLSRYVDAIVMRTTNHSRL---LELTEYATVPVINALTDN- 131 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~-~ls~~~D~iviR~~~~~~~---~~~~~~~~vpvINa~~~~- 131 (306)
+-.-..+.++++.|.+++..+...+ ..+ -...++ .++..+|++++-..+.... .+......+|||.-....
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~-~~~---e~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~d~~~~ 91 (267)
T cd01536 16 AMNKGAEAAAKELGVELIVLDAQND-VSK---QIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDID 91 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC-HHH---HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999999984999999969999-999---999999999759999999315841558999999987996999825667
Q ss_pred CH--HHHHHHHHHHH----HHHCCCC--CCCCEEEECC
Q ss_conf 02--46787655766----4200133--6773046104
Q gi|255764473|r 132 TH--PCQIIADIMTF----EEHRGSV--KGKLFSWSGD 161 (306)
Q Consensus 132 ~H--PtQaL~D~~Ti----~e~~g~l--~~~~i~~vGd 161 (306)
.. -+..-.|-+.. -++.-.. ...+|++++.
T Consensus 92 ~~~~~~~V~~D~~~~g~~a~~~L~~~~~g~~~i~~i~g 129 (267)
T cd01536 92 GGNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEG 129 (267)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 88864599628899999999999997499947999548
No 298
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.89 E-value=38 Score=14.68 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=29.7
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 942888357899998986347543333210000123210799999
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAK 94 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~ 94 (306)
-|++-|-|.|.-||.++ +||+-..-|-..-.|.+.-||++-.++
T Consensus 4 ~f~~~tdrerAiFEaGI-klGalyHqf~GtPvs~~~a~~le~aI~ 47 (116)
T COG2098 4 YFKKLTDRERAIFEAGI-KLGALYHQFVGTPVSPGTAESLEKAIE 47 (116)
T ss_pred CCCCCCHHHHHHHHCCC-CHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 00236778888887152-033122333077678543689999999
No 299
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=26.62 E-value=19 Score=16.69 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEEC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-C-
Q ss_conf 1079999975300101112101320067763012441240-433320246787655766420013367730461045-5-
Q gi|255764473|r 87 ETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVIN-ALTDNTHPCQIIADIMTFEEHRGSVKGKLFSWSGDG-N- 163 (306)
Q Consensus 87 Esl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvIN-a~~~~~HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~-~- 163 (306)
+..+++...|+.|--+-+.||+.--...++.+..---.+- .||... .|=-.|.--++.+.|..|+++|.- +
T Consensus 45 ~l~k~iYsnLspw~~v~~aRhp~Rp~~~dyi~~~~~~f~elhGDr~~------~dD~aii~G~~~~~~~~V~vig~~KG~ 118 (318)
T PRK05724 45 KLTKKIYANLTPWQKLQVARHPQRPYTLDYIELLFTDFTELHGDRAF------ADDKAIVGGLARFDGRPVMVIGHQKGR 118 (318)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCC------CCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 99999985799999999964789998999999982776785078456------779651788889989569999997588
Q ss_pred ----CC--------------CCCHHHCCCCCCEE-EEEECHHCCCCC
Q ss_conf ----55--------------43101001233125-765200001321
Q gi|255764473|r 164 ----NI--------------LHSLIEGAARFNYL-LNIATPIGSEPR 191 (306)
Q Consensus 164 ----~v--------------~hS~i~~~~~~g~~-v~~~~P~~~~~~ 191 (306)
|+ +--++..+.+|+.- ++++-.+|..|-
T Consensus 119 ~t~e~i~rNFGm~~PeGYRKAlRlm~lAekf~~Pvit~IDTpGAypG 165 (318)
T PRK05724 119 DTKERIRRNFGMPRPEGYRKALRLMEMAERFGLPIITFIDTPGAYPG 165 (318)
T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 83777874679999178999999999999709977999348976789
No 300
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=26.61 E-value=24 Score=15.93 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 87755999999999
Q gi|255764473|r 287 EAENRLHTQKAILL 300 (306)
Q Consensus 287 Qa~Ngl~vr~AiL~ 300 (306)
|.+|....||||++
T Consensus 361 e~egdyT~RlAl~E 374 (415)
T TIGR01748 361 EEEGDYTERLALLE 374 (415)
T ss_pred HHCCCHHHHHHHHH
T ss_conf 75077557889877
No 301
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.24 E-value=37 Score=14.72 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=18.4
Q ss_pred CCCEEEEEECCCC---HHHHHHCCCCCCEECCCCC
Q ss_conf 0101112101320---0677630124412404333
Q gi|255764473|r 99 YVDAIVMRTTNHS---RLLELTEYATVPVINALTD 130 (306)
Q Consensus 99 ~~D~iviR~~~~~---~~~~~~~~~~vpvINa~~~ 130 (306)
..|++++=..++. .+.++..+.+-.||+-.-|
T Consensus 62 ~~diIiLaVKP~~~~~vl~~l~~~~~~~iISv~AG 96 (267)
T PRK11880 62 EADVVVLAVKPQVMEDVLSELKGSLDKLVVSIAAG 96 (267)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 19999997287899999999876508789991699
No 302
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=25.97 E-value=47 Score=14.04 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=9.4
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCEEC
Q ss_conf 101112101320067763012441240
Q gi|255764473|r 100 VDAIVMRTTNHSRLLELTEYATVPVIN 126 (306)
Q Consensus 100 ~D~iviR~~~~~~~~~~~~~~~vpvIN 126 (306)
+..+|+-+-+.....++.+..++|+|.
T Consensus 172 af~ivlE~vp~~la~~It~~~~IPtIG 198 (254)
T cd06557 172 AFALVLECVPAELAKEITEALSIPTIG 198 (254)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCEEE
T ss_conf 559999567099999998578988894
No 303
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=25.72 E-value=45 Score=14.21 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=17.2
Q ss_pred CCCCCEEEEEECCCC-CHHHHHHHH
Q ss_conf 437987999942888-357899998
Q gi|255764473|r 41 PLSGKVLAMIFEKPS-TRTRVSFEV 64 (306)
Q Consensus 41 ~l~gk~i~~lF~e~S-tRTR~SFe~ 64 (306)
.|.|+..+.+-..|. ||-|.+.+.
T Consensus 298 RL~g~r~AIV~d~pGvTRDR~~~~~ 322 (714)
T PRK09518 298 RILGRREAVVEDTPGVTRDRVSYDA 322 (714)
T ss_pred HHHCCCEEEECCCCCCCCCCCEEEE
T ss_conf 8628841684698998837555799
No 304
>PRK12367 short chain dehydrogenase; Provisional
Probab=25.68 E-value=33 Score=15.10 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 544379879999428883578999989863475433332
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLS 77 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~ 77 (306)
....+||+|+.-=. |---=.+-...-++-|+.|+-|+
T Consensus 12 ~~~~kgKtIgITGA--sGaLG~AL~k~f~~~GakVIalT 48 (250)
T PRK12367 12 NSRWNGKRIGITGA--SGALGKALTKLFRAKGAKVIGLT 48 (250)
T ss_pred CCCCCCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 55638987999678--73899999999998899899983
No 305
>pfam00533 BRCT BRCA1 C Terminus (BRCT) domain. The BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- or heterodimers. BRCT domains are often found as tandem-repeat pairs. Structures of the BRCA1 BRCT domains revealed a basis for a widely utilized head-to-tail BRCT-BRCT oligomerisation mode. This conserved tandem BRCT architecture facilitates formation of the canonical BRCT phospho-peptide interaction cleft at a groove between the BRCT domains. Disease associated missense and nonsense mutations in the BRCA1 BRCT domains disrupt peptide binding by directly occluding this peptide binding groove, or by disrupting key conserved BRCT core folding determinants.
Probab=25.60 E-value=48 Score=13.99 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 544379879999428883578999989863475433
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTI 74 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~ 74 (306)
..+|.|.+++..-+....|+.+ +..+..+||.+.
T Consensus 3 ~~~f~~~~~~i~~~~~~~r~~l--~~~i~~~Gg~~~ 36 (77)
T pfam00533 3 EKLFKGKTFVITGLDSLEREEL--EELIEKLGGKVT 36 (77)
T ss_pred CCCCCCCEEEEECCCCCCHHHH--HHHHHHHCCEEE
T ss_conf 8537996899979498499999--999999599471
No 306
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=25.48 E-value=39 Score=14.61 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=18.2
Q ss_pred CCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 437987999942888-35789999898634754333321
Q gi|255764473|r 41 PLSGKVLAMIFEKPS-TRTRVSFEVAMKHLGGDTIFLSG 78 (306)
Q Consensus 41 ~l~gk~i~~lF~e~S-tRTR~SFe~A~~~LG~~~~~~~~ 78 (306)
.|.|+..+.+-.+|. ||-|.. .-+..-|.....+|-
T Consensus 57 rL~~~~~AIV~d~pGvTRDr~~--~~~~~~~~~f~lvDT 93 (474)
T PRK03003 57 RILGRREAVVEDIPGVTRDRVS--YDAEWNGRRFVVQDT 93 (474)
T ss_pred HHHCCCEEEECCCCCCCCCCEE--EEEEECCCEEEEEEC
T ss_conf 9868863880598998808636--899999928999979
No 307
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.23 E-value=44 Score=14.28 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 578999989863475433332100
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSE 80 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ 80 (306)
+|=.|-.....++|..|+..|...
T Consensus 27 ~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 27 VSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 889999999997899799998998
No 308
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.16 E-value=29 Score=15.48 Aligned_cols=122 Identities=12% Similarity=0.037 Sum_probs=49.4
Q ss_pred HHHHHHHHCCC-CCCCCCCCCCC----CCCCCCHHHHHHHH-HHCCCEEEEEECC--CCHHHHHHC--CCCCCEECCCCC
Q ss_conf 99989863475-43333210000----12321079999975-3001011121013--200677630--124412404333
Q gi|255764473|r 61 SFEVAMKHLGG-DTIFLSGSEMQ----LGRAETIGDTAKVL-SRYVDAIVMRTTN--HSRLLELTE--YATVPVINALTD 130 (306)
Q Consensus 61 SFe~A~~~LG~-~~~~~~~~~ss----~~kgEsl~Dt~~~l-s~~~D~iviR~~~--~~~~~~~~~--~~~vpvINa~~~ 130 (306)
.+--||++-|- ++++++.-.-. ..-..+-..+-+.| ....+..++|... ++.+..++. ..+-||.-.+++
T Consensus 92 ~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~~TIlRPs~F~q~l~~~~a~pi~~~~~v~~~~~~ 171 (319)
T CHL00194 92 ALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGINYTIFRLAGFFQGLISQYAIPILDSQTIWITGES 171 (319)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99999998499889996135666688756778799999999867998599847399998899876776307857766998
Q ss_pred CC---HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCC-CEEEEE
Q ss_conf 20---24678765576642001336773046104555543101001233-125765
Q gi|255764473|r 131 NT---HPCQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARF-NYLLNI 182 (306)
Q Consensus 131 ~~---HPtQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~-g~~v~~ 182 (306)
.. =-+|=++++..=.-.....+|+.+...|.-.=...-.++++.++ |-...+
T Consensus 172 ~~ia~I~~~DVA~~~a~aL~~~~~~gk~y~L~GP~a~T~~EIa~l~~~~~Gk~~~i 227 (319)
T CHL00194 172 TPIAYIDTQDAAKFALKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKV 227 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 75288779999999999958977589899954986389999999999985999877
No 309
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.04 E-value=49 Score=13.93 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEEC--CCCHHHHHHCCCCCCEECCCCC--C
Q ss_conf 5789999898634754333321000012321079999975-300101112101--3200677630124412404333--2
Q gi|255764473|r 57 RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTT--NHSRLLELTEYATVPVINALTD--N 131 (306)
Q Consensus 57 RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~--~~~~~~~~~~~~~vpvINa~~~--~ 131 (306)
+--...|.++.+.|-+++..+.... .|.-++..+.+ +..+|++++=.. .+....+..+..++||+-.+.. .
T Consensus 16 ~~~~gi~~~~~~~Gy~~ll~~s~~~----~~~e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iPvV~~~r~~~~ 91 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLND----PERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDMGG 91 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999999986998999968999----899999999998579989997677779999999998479988998446899
Q ss_pred CHHHHHHHHHHH----HHHHCCCCCCCCEEEECCC
Q ss_conf 024678765576----6420013367730461045
Q gi|255764473|r 132 THPCQIIADIMT----FEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 132 ~HPtQaL~D~~T----i~e~~g~l~~~~i~~vGd~ 162 (306)
..|+ +..|-+. .-++.-..-..+|++++..
T Consensus 92 ~~~~-V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 125 (269)
T cd06281 92 GADA-VLFDHAAGMRQAVEYLISLGHRRIALVGGG 125 (269)
T ss_pred CCCE-EEECHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9998-998759999999999997599866898078
No 310
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=24.97 E-value=49 Score=13.92 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEEEC-CCCHHHHHHCCCCCCEEC
Q ss_conf 99428883578999989863475433332100001232107999997530-0101112101-320067763012441240
Q gi|255764473|r 49 MIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSR-YVDAIVMRTT-NHSRLLELTEYATVPVIN 126 (306)
Q Consensus 49 ~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~-~~D~iviR~~-~~~~~~~~~~~~~vpvIN 126 (306)
+++..++-.+|..+..+... -.-+|-|.|+++-|.. ..|+|++=+. -|....++.+.+++|+|+
T Consensus 38 i~~~s~~f~~~~~~q~~~~w--------------~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllh 103 (230)
T COG1794 38 LLLYSVDFPEIETLQRAGEW--------------DEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLH 103 (230)
T ss_pred HHEECCCCCCHHHHHCCCCC--------------CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEH
T ss_conf 31226886559998736765--------------6589999999999996599989970773789999999854997330
Q ss_pred CCC
Q ss_conf 433
Q gi|255764473|r 127 ALT 129 (306)
Q Consensus 127 a~~ 129 (306)
.-+
T Consensus 104 Iid 106 (230)
T COG1794 104 IID 106 (230)
T ss_pred HHH
T ss_conf 789
No 311
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.90 E-value=40 Score=14.55 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 559999999999
Q gi|255764473|r 290 NRLHTQKAILLW 301 (306)
Q Consensus 290 Ngl~vr~AiL~~ 301 (306)
|+++..-++..+
T Consensus 430 ~~l~~~RrLf~~ 441 (613)
T PRK02048 430 NRVGEHRALAHQ 441 (613)
T ss_pred CCHHHHHHHHHH
T ss_conf 415899999999
No 312
>pfam04723 GRDA Glycine reductase complex selenoprotein A. Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP. A member of this family may also exist in Treponema denticola.
Probab=24.86 E-value=50 Score=13.90 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCCCCCEEEECCCCCCCCCHHHCCCCC-CEEEEEECHHCCC
Q ss_conf 336773046104555543101001233-1257652000013
Q gi|255764473|r 150 SVKGKLFSWSGDGNNILHSLIEGAARF-NYLLNIATPIGSE 189 (306)
Q Consensus 150 ~l~~~~i~~vGd~~~v~hS~i~~~~~~-g~~v~~~~P~~~~ 189 (306)
-++|+|+.++||...|+---++.+.+- |.++.+.+.+.|-
T Consensus 2 ~l~gKkviiiGdRDGiPgpaie~c~k~~gaevvfs~TECFV 42 (150)
T pfam04723 2 IFQGKKVIIIGDRDGIPGPAIEECLKSIGAEVAFSSTECFV 42 (150)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 66786699981688997488999985459669997435677
No 313
>KOG4165 consensus
Probab=24.83 E-value=49 Score=13.97 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECCCCCCCH
Q ss_conf 210799999753001011121013200677630124412404333202
Q gi|255764473|r 86 AETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINALTDNTH 133 (306)
Q Consensus 86 gEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa~~~~~H 133 (306)
.|-+.|..+ +..|.|.++-|.+ +.-+..+.+.+.|||..--+|..|
T Consensus 179 REev~dLl~-ld~~IDLvIPRGS-s~LVr~Ik~~tkIPVLGHA~Gich 224 (433)
T KOG4165 179 REEVSDLLK-LDDYIDLVIPRGS-SDLVRSIKDTTKIPVLGHAEGICH 224 (433)
T ss_pred HHHHHHHHH-HHHHEEEEECCCC-HHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 877888860-2200467723883-799998764565740024564269
No 314
>PRK12831 putative oxidoreductase; Provisional
Probab=24.80 E-value=46 Score=14.16 Aligned_cols=258 Identities=16% Similarity=0.158 Sum_probs=111.5
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC------------CCCCCCCHH-HHHHHHHHCCCEEEE
Q ss_conf 5443798799994288835789999898634754333321000------------012321079-999975300101112
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM------------QLGRAETIG-DTAKVLSRYVDAIVM 105 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s------------s~~kgEsl~-Dt~~~ls~~~D~ivi 105 (306)
..+-.||.|+.+=-=|+ =+|=..--.++|-.|..|..... -+-|-|-+. +...+.+.. +-+
T Consensus 135 ~~~~~gkkVAVIGsGPA---GLsaA~~La~~G~~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~~~G---V~~ 208 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPA---GLTCAGDLAKKGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLG---VKI 208 (464)
T ss_pred CCCCCCCEEEEECCCHH---HHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC---CEE
T ss_conf 88789998999897689---999999999769917998278888980445168887667899999999998529---389
Q ss_pred EE----CCCCHHHHHHC---CCCCCEECCCCCC----CHHHHHH------HHHHHHHHH----CC-----CCCCCCEEEE
Q ss_conf 10----13200677630---1244124043332----0246787------655766420----01-----3367730461
Q gi|255764473|r 106 RT----TNHSRLLELTE---YATVPVINALTDN----THPCQII------ADIMTFEEH----RG-----SVKGKLFSWS 159 (306)
Q Consensus 106 R~----~~~~~~~~~~~---~~~vpvINa~~~~----~HPtQaL------~D~~Ti~e~----~g-----~l~~~~i~~v 159 (306)
+. ..+-.+.++.+ |.-| +|--|... .=|-.-| .|+++-... .. ...|++|+++
T Consensus 209 ~~n~~vG~dis~~~L~~~~~yDAV-~la~Ga~~~r~l~ipG~~~~gV~~a~~fL~~~n~~~~~~~~~~~~~~~Gk~VvVI 287 (464)
T PRK12831 209 ETNVIVGRTVTIDELLEEEGFDAV-FIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVV 287 (464)
T ss_pred EECCCCCCCCCHHHHHHCCCCCEE-EEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 915742787679999635699889-9944888764378887668886897999999873001266566742258778998
Q ss_pred CCCCCCCCCHHHCCCCCCEEEEEECHHCC--CCC-CCCHHHHHCCCCCCCCCCCHHHHCCCCC-CCCCCCEEEC--CCCC
Q ss_conf 04555543101001233125765200001--321-0000243201332221366466306873-3222100000--0220
Q gi|255764473|r 160 GDGNNILHSLIEGAARFNYLLNIATPIGS--EPR-NEYLNWARNQGASVALFHDAVQAVKGAH-CVFTDTWISM--NQEF 233 (306)
Q Consensus 160 Gd~~~v~hS~i~~~~~~g~~v~~~~P~~~--~~~-~~~~~~~~~~g~~i~~~~d~~eal~~aD-~V~~~~~~~~--~~~~ 233 (306)
|.++ |+---+..+.|+|.+++++.-... .|. ..-++.+...|..+.....+.+.+.+.+ -|---..+.+ ++.+
T Consensus 288 GGGn-tA~D~arta~R~GaeV~ivyrr~~~~mpa~~~E~~~a~eeGv~~~~~~~p~~i~~~e~G~v~gv~~~~~~l~~~d 366 (464)
T PRK12831 288 GGGN-VAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPD 366 (464)
T ss_pred CCCH-HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 8855-689999988742977999704572138987012337874897899656855887548883887899998843557
Q ss_pred HH--------HHHH-------CCC--CCCCCHHH------HHCCCCCCEEECCC---CCCCCCCCCHHHHCCCCCHHHHH
Q ss_conf 13--------3310-------011--12336889------96289872992599---98748735767967997106868
Q gi|255764473|r 234 KA--------REEH-------VFQ--PFQVNLSL------MSMAHPDALFMHCL---PAHRGEEVINEVLDGPQSVVFDE 287 (306)
Q Consensus 234 ~~--------~~~~-------~~~--~y~i~~~~------l~~a~~~~~vmHpl---P~~rg~EI~~~v~d~~~s~~~~Q 287 (306)
.. ...+ .+. .+..+... ++.-+.+.++-.+- .-..|+=...|+..+|. .+.+-
T Consensus 367 ~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~~~~~~~~~~~gi~~~~~g~i~~~~~~~~Ts~~gVFa~GD~~~G~~-~vV~A 445 (464)
T PRK12831 367 ASGRRRPVEIEGSEFVMEVDTVIMSLGTSPNPLISSTTPGLEINKRGCIVADEETGLTSIEGVYAGGDAVTGAA-TVILA 445 (464)
T ss_pred CCCCEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCH-HHHHH
T ss_conf 88877137649937999899999998689874300136680277999888478998428999998278676833-99999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 775599999999996255
Q gi|255764473|r 288 AENRLHTQKAILLWCFGI 305 (306)
Q Consensus 288 a~Ngl~vr~AiL~~~lG~ 305 (306)
+..|--+..+|-.|+.|.
T Consensus 446 i~~Gr~AA~~I~~yL~gk 463 (464)
T PRK12831 446 MGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999997359
No 315
>PRK00124 hypothetical protein; Validated
Probab=24.76 E-value=50 Score=13.89 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=15.7
Q ss_pred CCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 04555543101001233125765200
Q gi|255764473|r 160 GDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 160 Gd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
+|.--|..-.+.++.+++..+.+++-
T Consensus 7 ADACPVk~~i~~~a~r~~i~v~~Van 32 (149)
T PRK00124 7 ADACPVKEIIYRVAERHGIPVTLVAN 32 (149)
T ss_pred CCCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf 88894099999999986976999968
No 316
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=24.63 E-value=29 Score=15.49 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=4.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 835789999898
Q gi|255764473|r 55 STRTRVSFEVAM 66 (306)
Q Consensus 55 StRTR~SFe~A~ 66 (306)
..|..-+.+.|+
T Consensus 51 Dl~d~~~~~~~~ 62 (328)
T TIGR03466 51 DLRDPASLRKAL 62 (328)
T ss_pred ECCCHHHHHHHH
T ss_conf 079999999997
No 317
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=24.62 E-value=50 Score=13.88 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=30.0
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHCCCCC-CEEEEEECHHCCC
Q ss_conf 1336773046104555543101001233-1257652000013
Q gi|255764473|r 149 GSVKGKLFSWSGDGNNILHSLIEGAARF-NYLLNIATPIGSE 189 (306)
Q Consensus 149 g~l~~~~i~~vGd~~~v~hS~i~~~~~~-g~~v~~~~P~~~~ 189 (306)
+.++|+|+.++||...|+---++.+.+- |.++.+.+.+.|-
T Consensus 2 ~~l~gKkviiiGdRDGiPgpai~~c~k~~gaevvfs~TECFV 43 (157)
T PRK13265 2 SLFEGKKVIIIGDRDGIPGPAIEECIKGTGAEVVFSSTECFV 43 (157)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 755686699981688997488999985359659997435677
No 318
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=24.55 E-value=50 Score=13.87 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=27.6
Q ss_pred CCCEEEEEECCCCCHHHHHH--HHHHHHCCCCCCCCCCCC
Q ss_conf 79879999428883578999--989863475433332100
Q gi|255764473|r 43 SGKVLAMIFEKPSTRTRVSF--EVAMKHLGGDTIFLSGSE 80 (306)
Q Consensus 43 ~gk~i~~lF~e~StRTR~SF--e~A~~~LG~~~~~~~~~~ 80 (306)
.||.+...=.+.|--|-++. -..+++.|+.++++|..+
T Consensus 54 ~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~ 93 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 8808999889877799999999999873598399996254
No 319
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=24.48 E-value=28 Score=15.50 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=64.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC------------CCCHHHHHHCC----C--
Q ss_conf 89999898634754333321000012321079999975300101112101------------32006776301----2--
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTT------------NHSRLLELTEY----A-- 120 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~------------~~~~~~~~~~~----~-- 120 (306)
|=-|..+++++|-.|-.-.. .+|+++.....+.-.==+++|.. +...+.++++. |
T Consensus 128 Re~F~~~M~ei~~pvp~S~~-------~~~~eEA~~~a~~~GyPviVRpAftLGG~GgGiA~n~eEL~~~~~~aL~~SpI 200 (1089)
T TIGR01369 128 RELFREAMKEIGEPVPKSEI-------VHSVEEALKAAKEIGYPVIVRPAFTLGGTGGGIASNEEELKEIVERALSASPI 200 (1089)
T ss_pred HHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHHHHCCCCEEECCCHHCCCCCCCEECCHHHHHHHHHHHHHHCCC
T ss_conf 79999999973899881100-------27889999999626896898100323889985225778999999988630888
Q ss_pred -------------------------C-CCEECCC--CC------CC---HHHHHHHHH---------HHHHHHCCCCCC-
Q ss_conf -------------------------4-4124043--33------20---246787655---------766420013367-
Q gi|255764473|r 121 -------------------------T-VPVINAL--TD------NT---HPCQIIADI---------MTFEEHRGSVKG- 153 (306)
Q Consensus 121 -------------------------~-vpvINa~--~~------~~---HPtQaL~D~---------~Ti~e~~g~l~~- 153 (306)
+ |=|=|+. |. ++ =|+|.|.|- +.|-++.|-.-|
T Consensus 201 ~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNmEN~DPmGVHTGdSIVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgG 280 (1089)
T TIGR01369 201 NQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGG 280 (1089)
T ss_pred CEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECC
T ss_conf 55750110033178898898626878899974547689845707833650763688078999999999999873912167
Q ss_pred CCEEEECCC----------C-CCCCCHHHCCCCCCE
Q ss_conf 730461045----------5-554310100123312
Q gi|255764473|r 154 KLFSWSGDG----------N-NILHSLIEGAARFNY 178 (306)
Q Consensus 154 ~~i~~vGd~----------~-~v~hS~i~~~~~~g~ 178 (306)
++|=|.=|+ | ||-||=..++..-|+
T Consensus 281 CNvQFAL~P~s~~Y~vIEvNPRvSRSSALASKATGY 316 (1089)
T TIGR01369 281 CNVQFALDPDSGRYYVIEVNPRVSRSSALASKATGY 316 (1089)
T ss_pred CCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 421321507897069998678821358987665166
No 320
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.29 E-value=51 Score=13.84 Aligned_cols=106 Identities=9% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999665236665443798799994288835789999898634754333321000012321079999975
Q gi|255764473|r 17 SNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL 96 (306)
Q Consensus 17 ~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l 96 (306)
-.+..-+.+|.+++.. + ..+ ..+..+.-.... .-..+-|..+..+..... ..+....+...+
T Consensus 16 GH~~RclaLA~~l~~~---g--------~~v-~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (280)
T TIGR03590 16 GHVMRCLTLARELRKR---G--------AEV-AFACKTLPGDLI---DLILSAGFPVYVLPDTSS---WQDDALELINLL 77 (280)
T ss_pred HHHHHHHHHHHHHHHC---C--------CEE-EEEEECCCHHHH---HHHHHCCCCEEECCCCCC---CCCCHHHHHHHH
T ss_conf 0899999999999988---9--------949-999927958899---999975981798167565---201299999999
Q ss_pred HHC-CCEEEEEECCC-CHHHHHHCCCCCCEECCCCC--CCHHHHHHHH
Q ss_conf 300-10111210132-00677630124412404333--2024678765
Q gi|255764473|r 97 SRY-VDAIVMRTTNH-SRLLELTEYATVPVINALTD--NTHPCQIIAD 140 (306)
Q Consensus 97 s~~-~D~iviR~~~~-~~~~~~~~~~~vpvINa~~~--~~HPtQaL~D 140 (306)
... .|.+|+-+..- .......+....+++.-.|- ..|+|..+.+
T Consensus 78 ~~~~~d~vIiD~y~~~~~~~~~lk~~~~~~i~iDD~~~~~~~~d~vin 125 (280)
T TIGR03590 78 EKEKFDILIVDHYALDADWEKLIKHFGRKLLVIDDLADRPHDCDLLLD 125 (280)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEC
T ss_conf 737979999925999979999999839839999367654656142541
No 321
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.05 E-value=51 Score=13.81 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=32.1
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 94288835789999898634754333321000012321079999975300101112101
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTT 108 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~ 108 (306)
+.+-.|--|=.+...+++.+|..++.+=+...+..| .+..+.+ ..+++.+-..
T Consensus 53 vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k----~~~~~~~--GA~vi~~~~~ 105 (244)
T cd00640 53 IIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEK----VAQMRAL--GAEVVLVPGD 105 (244)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHHH----HHHHHHC--CCEEEEECCC
T ss_conf 999278578999999887469663377675156789----9988707--9779998995
No 322
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=23.97 E-value=52 Score=13.80 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCCCCCC
Q ss_conf 99989863475433332
Q gi|255764473|r 61 SFEVAMKHLGGDTIFLS 77 (306)
Q Consensus 61 SFe~A~~~LG~~~~~~~ 77 (306)
+|...+.+-|.+.+-.+
T Consensus 28 ~~A~~~d~~giD~iLVG 44 (266)
T PRK00311 28 SFARLFDEAGVDVILVG 44 (266)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999997599889977
No 323
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=23.82 E-value=52 Score=13.78 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=71.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHC--CCEEEEEECCC--CHHHHH--HCCCCCCEECCCCCC
Q ss_conf 89999898634754333321000012321079999975-300--10111210132--006776--301244124043332
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRY--VDAIVMRTTNH--SRLLEL--TEYATVPVINALTDN 131 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~--~D~iviR~~~~--~~~~~~--~~~~~vpvINa~~~~ 131 (306)
.-.-+..+...|++++++..+ +.|-+.++|+.+.. ..| .|++|==--=+ ..+++| .+|..+-=||. ++-
T Consensus 40 ~~~~~~~~~~~G~~v~~~~~D---~T~~~e~~~~~~~~~~~fG~~DiLVNNAG~QhVaPiEeFP~~~w~~iiav~L-tsa 115 (258)
T TIGR01963 40 AEAAAKVATDAGGSVIYLVAD---VTKEEEIADMIQAVAAEFGGLDILVNNAGIQHVAPIEEFPPEKWDRIIAVML-TSA 115 (258)
T ss_pred HHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHHHHCC-CHH
T ss_conf 999999999618835775147---8888999999999999856887488446401417654778667873730216-888
Q ss_pred CHHHHHHHHHHHHHHHCC-CCCCCCEEEECC------------CCCCCCCHHH-----C--CCCCCEEEEEECHHCCCCC
Q ss_conf 024678765576642001-336773046104------------5555431010-----0--1233125765200001321
Q gi|255764473|r 132 THPCQIIADIMTFEEHRG-SVKGKLFSWSGD------------GNNILHSLIE-----G--AARFNYLLNIATPIGSEPR 191 (306)
Q Consensus 132 ~HPtQaL~D~~Ti~e~~g-~l~~~~i~~vGd------------~~~v~hS~i~-----~--~~~~g~~v~~~~P~~~~~~ 191 (306)
.|=+.+=+=.|-=+ -+| ++ ..++- +..-.|-++= + .+.-|...+.+|| +|--.
T Consensus 116 F~t~raAlP~Mk~~-gwGGRI-----iNIAS~HGLvASp~KSAYVAAKHG~~GLTKv~ALE~A~~giT~NaiCP-GYV~T 188 (258)
T TIGR01963 116 FHTIRAALPHMKKQ-GWGGRI-----INIASVHGLVASPFKSAYVAAKHGLIGLTKVLALEVAAHGITANAICP-GYVRT 188 (258)
T ss_pred HHHHHHCCCCCCCC-CCCCEE-----EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCC
T ss_conf 99997506432137-855379-----971010000035321345677430212115555420478875866728-75675
Q ss_pred C----CCHHHHHCCCCC
Q ss_conf 0----000243201332
Q gi|255764473|r 192 N----EYLNWARNQGAS 204 (306)
Q Consensus 192 ~----~~~~~~~~~g~~ 204 (306)
+ ++.+.+|..|..
T Consensus 189 PLV~~Qi~DqAk~rGi~ 205 (258)
T TIGR01963 189 PLVEKQIADQAKTRGIP 205 (258)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 54676589998651889
No 324
>PRK09526 lacI lac repressor; Reviewed
Probab=23.79 E-value=52 Score=13.77 Aligned_cols=147 Identities=7% Similarity=0.084 Sum_probs=73.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEECCC---C-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 589999999999999999665236665-443798799994288---8-35789999898634754333321000012321
Q gi|255764473|r 13 NISSSNLSCIIEVAKKIKNSSENIFEN-KPLSGKVLAMIFEKP---S-TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAE 87 (306)
Q Consensus 13 dl~~~~i~~ll~~A~~~k~~~~~~~~~-~~l~gk~i~~lF~e~---S-tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgE 87 (306)
..+.+--..+++.|+++.-.+...... .--+.++|+++...- . .+--...+..+.+.|.+++......+. -+
T Consensus 31 ~vs~~tr~rV~~~a~elgY~pn~~Ar~l~~~~t~~Igli~~~i~~~~~~~~~~~i~~~~~~~gy~~~l~~~~~~~---~~ 107 (342)
T PRK09526 31 HVSAKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLVTTSLALHAPSQIAAAIKSRADQLGYSVVISMVERSG---VE 107 (342)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC---HH
T ss_conf 999999999999999839997888887513887279999346665247999999999999869969999688980---89
Q ss_pred CHHHHHHHH-HHCCCEEEEEEC-CCCHHHHH-HCCCCCCEECCCCCCCH-HHHHHHHHHH----HHHHCCCCCCCCEEEE
Q ss_conf 079999975-300101112101-32006776-30124412404333202-4678765576----6420013367730461
Q gi|255764473|r 88 TIGDTAKVL-SRYVDAIVMRTT-NHSRLLEL-TEYATVPVINALTDNTH-PCQIIADIMT----FEEHRGSVKGKLFSWS 159 (306)
Q Consensus 88 sl~Dt~~~l-s~~~D~iviR~~-~~~~~~~~-~~~~~vpvINa~~~~~H-PtQaL~D~~T----i~e~~g~l~~~~i~~v 159 (306)
.+++....+ +..+|++++-.+ .......+ ....++|++--....+. ..-+..|-+- .-++.-..--.+|+++
T Consensus 108 ~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~l~~~~~~ip~v~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~Ghr~I~~i 187 (342)
T PRK09526 108 ACQAAVNELLAQRVSGVIINVPLEDADAEKIVADCADVPCLFLDVSPQSPVNSVSFSHEDGTRLGVEHLVELGHQQIALL 187 (342)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999996698889995688844899999857998599980688889998996479999999999997599759999
Q ss_pred CCC
Q ss_conf 045
Q gi|255764473|r 160 GDG 162 (306)
Q Consensus 160 Gd~ 162 (306)
|..
T Consensus 188 ~~~ 190 (342)
T PRK09526 188 AGP 190 (342)
T ss_pred ECC
T ss_conf 589
No 325
>PRK07985 oxidoreductase; Provisional
Probab=23.76 E-value=35 Score=14.91 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=10.9
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|+..-+...|..++-++|-
T Consensus 211 rslA~Ela~~gIRVN~IaPG 230 (294)
T PRK07985 211 RGLAKQVAEKGIRVNIVAPG 230 (294)
T ss_pred HHHHHHHCCCCEEEEEEEEC
T ss_conf 99999965339299999638
No 326
>PRK07201 short chain dehydrogenase; Provisional
Probab=23.63 E-value=28 Score=15.53 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHH
Q ss_conf 013367730461045555431010012331257652000
Q gi|255764473|r 148 RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 148 ~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|.++|+.+.+.|-.+.+.......+++-|+.+.+++-.
T Consensus 371 ~g~L~GKvalITGASSGIG~A~A~~LA~~GA~Vvl~AR~ 409 (663)
T PRK07201 371 RGPLEGKHVIITGASSGIGRATAIKVAEAGATVFALARD 409 (663)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 888799479993887599999999999879989999899
No 327
>PRK13530 arsenate reductase; Provisional
Probab=23.51 E-value=53 Score=13.74 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=33.6
Q ss_pred CCCCEEEECCCCCCCCCHH-HCC-CCC-CE--EEEEECHHCCCCCCCCHHHHHCCCCCCCCC--CCHH-HHCCCCCCCCC
Q ss_conf 6773046104555543101-001-233-12--576520000132100002432013322213--6646-63068733222
Q gi|255764473|r 152 KGKLFSWSGDGNNILHSLI-EGA-ARF-NY--LLNIATPIGSEPRNEYLNWARNQGASVALF--HDAV-QAVKGAHCVFT 223 (306)
Q Consensus 152 ~~~~i~~vGd~~~v~hS~i-~~~-~~~-g~--~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~--~d~~-eal~~aD~V~~ 223 (306)
.+++|.++.-+ |.++|.+ +++ ..+ |- .+.-++-......+..+...+..|..++-. ..++ ..+.++|+|+|
T Consensus 2 ~kk~VLFvCt~-Ns~RSqmAEal~~~~~~~~~~v~SAG~~~~~v~p~ai~vm~e~Gidis~~~~k~i~~~~~~~~D~VIt 80 (133)
T PRK13530 2 NKKTIYFLCTG-NSCRSQMAEGWGKQYLGDEWNVYSAGIEAHGVNPNAIKAMKEVGIDISNQTSDLIDNDILNNADLVVT 80 (133)
T ss_pred CCCEEEEEECC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCEEEE
T ss_conf 98879999599-62788999999998658966998067787786989999999869165557877578646246898999
Q ss_pred CC
Q ss_conf 10
Q gi|255764473|r 224 DT 225 (306)
Q Consensus 224 ~~ 225 (306)
.+
T Consensus 81 ~c 82 (133)
T PRK13530 81 LC 82 (133)
T ss_pred EC
T ss_conf 56
No 328
>PRK11749 putative oxidoreductase; Provisional
Probab=23.45 E-value=34 Score=15.01 Aligned_cols=260 Identities=17% Similarity=0.140 Sum_probs=114.0
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCC--------CCHHHHHHHH-HHCCCEEEEE
Q ss_conf 54437987999942888357899998986347543333210000---1232--------1079999975-3001011121
Q gi|255764473|r 39 NKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQ---LGRA--------ETIGDTAKVL-SRYVDAIVMR 106 (306)
Q Consensus 39 ~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~ss---~~kg--------Esl~Dt~~~l-s~~~D~iviR 106 (306)
..+-.||.|+.+=-=|+ =+|-..-..++|.+|..+.....- +..| |-+..-...+ +..++. ...
T Consensus 135 ~~~~~gkkVAIIGaGPA---GLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~-~~n 210 (460)
T PRK11749 135 PAPKTGKKVAVIGAGPA---GLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEI-RTN 210 (460)
T ss_pred CCCCCCCEEEEECCCHH---HHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE-ECC
T ss_conf 86678998999896789---99999999976984799704787875575458997554479999999998539789-855
Q ss_pred E--CCCCHHHHHHCCCCCCEECCCCC---------CCHH--HHHHHHHHHHH---HHC----CCCCCCCEEEECCCCCCC
Q ss_conf 0--13200677630124412404333---------2024--67876557664---200----133677304610455554
Q gi|255764473|r 107 T--TNHSRLLELTEYATVPVINALTD---------NTHP--CQIIADIMTFE---EHR----GSVKGKLFSWSGDGNNIL 166 (306)
Q Consensus 107 ~--~~~~~~~~~~~~~~vpvINa~~~---------~~HP--tQaL~D~~Ti~---e~~----g~l~~~~i~~vGd~~~v~ 166 (306)
+ ..+-.+.++.+.-+.=+|--|.. ..+| ..+ .|+++-. +.. ....|++|+++|.++ |+
T Consensus 211 ~~vG~ditl~~L~~~ydAV~lAtGa~~~r~l~ipGe~~~GV~~a-~dfL~~~~~~~~~~~~~~~~~Gk~VvVIGgGn-vA 288 (460)
T PRK11749 211 TAVGRDITLDELRAEYDAVFIGTGLGLPRFLGIPGENLGGVYSA-VDFLTRVNQDAVADDDTLIAVGKRVVVIGGGN-TA 288 (460)
T ss_pred EEECCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEH-HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH-HH
T ss_conf 58566432887741148899944789886479998668887898-99999974365444577554487489989846-69
Q ss_pred CCHHHCCCCCCEE-EEEECHHCCC--CC-CCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEC--CCCC-------
Q ss_conf 3101001233125-7652000013--21-00002432013322213664663068733222100000--0220-------
Q gi|255764473|r 167 HSLIEGAARFNYL-LNIATPIGSE--PR-NEYLNWARNQGASVALFHDAVQAVKGAHCVFTDTWISM--NQEF------- 233 (306)
Q Consensus 167 hS~i~~~~~~g~~-v~~~~P~~~~--~~-~~~~~~~~~~g~~i~~~~d~~eal~~aD~V~~~~~~~~--~~~~------- 233 (306)
---+..+.++|.+ |+++...+.. |. ..-++.++..|..+.....+.+.+.+.+-+-.-....+ .+..
T Consensus 289 ~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei~~A~~eGv~~~~~~~p~ei~~~~~~v~gv~~~~~~l~~~d~g~~~~~ 368 (460)
T PRK11749 289 MDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFVWLAAPVAILGDEGRVTGVKFERMELGEPDAGRRRPV 368 (460)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHHHHHHHCCEEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCE
T ss_conf 99899999828984633000752009989999998874570888266878999659957999999988615777873524
Q ss_pred -------HHHHHHCCC--CCCCCHHHH------HCCCCCCEEECCCCC---CCCCCCCHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf -------133310011--123368899------628987299259998---74873576796799710686877559999
Q gi|255764473|r 234 -------KAREEHVFQ--PFQVNLSLM------SMAHPDALFMHCLPA---HRGEEVINEVLDGPQSVVFDEAENRLHTQ 295 (306)
Q Consensus 234 -------~~~~~~~~~--~y~i~~~~l------~~a~~~~~vmHplP~---~rg~EI~~~v~d~~~s~~~~Qa~Ngl~vr 295 (306)
...-.-.+- .+..+...+ +..+.+.++.-+-.. ..|+=...|+..+|. .+.+-+..|-.+.
T Consensus 369 ~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~g~~~~~~g~i~~~d~~~~Ts~~gVFAaGD~~~G~~-~vv~Ai~~Gr~AA 447 (460)
T PRK11749 369 PIEGSEFTLEADMVIKAIGQTPNPLILATTPGLAVTRWGTIIADDETGRTSLPGVFAGGDIVTGAA-TVVLAVGDGKDAA 447 (460)
T ss_pred ECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCEEEECCCCCCCH-HHHHHHHHHHHHH
T ss_conf 079957999899999998789884100346681276899988468997228999999458776705-9999999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999996255
Q gi|255764473|r 296 KAILLWCFGI 305 (306)
Q Consensus 296 ~AiL~~~lG~ 305 (306)
.+|-.|+.|-
T Consensus 448 ~~I~~~L~G~ 457 (460)
T PRK11749 448 EAIHEYLEGA 457 (460)
T ss_pred HHHHHHHCCC
T ss_conf 9999985898
No 329
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.15 E-value=54 Score=13.69 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEEC---CCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999999999999665236665-4437987999942---8883-57899998986347543333210000123210
Q gi|255764473|r 14 ISSSNLSCIIEVAKKIKNSSENIFEN-KPLSGKVLAMIFE---KPST-RTRVSFEVAMKHLGGDTIFLSGSEMQLGRAET 88 (306)
Q Consensus 14 l~~~~i~~ll~~A~~~k~~~~~~~~~-~~l~gk~i~~lF~---e~St-RTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEs 88 (306)
.+++.-..+++.|+++--.+...... ..-+-++|++++. .|+. +--...|.++++-|.+++...... ..|.
T Consensus 30 Vs~~Tr~rV~~aa~eLgY~Pn~~Ar~L~~~~t~~Igvvvp~~~n~~~~~l~~~i~~~~~~~gy~~li~~s~~----~~~~ 105 (330)
T PRK11303 30 ISDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKLLEQQARQRGYQLLIACSDD----QPDN 105 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHH
T ss_conf 699999999999999689948889886308777677754544431567888999999996698799994799----9899
Q ss_pred HHHHHHHH-HHCCCEEEEEE--CCCCHHHHHHCCCCCCEECCCCC--CCHHHHHHHHHH----HHHHHCCCCCCCCEEEE
Q ss_conf 79999975-30010111210--13200677630124412404333--202467876557----66420013367730461
Q gi|255764473|r 89 IGDTAKVL-SRYVDAIVMRT--TNHSRLLELTEYATVPVINALTD--NTHPCQIIADIM----TFEEHRGSVKGKLFSWS 159 (306)
Q Consensus 89 l~Dt~~~l-s~~~D~iviR~--~~~~~~~~~~~~~~vpvINa~~~--~~HPtQaL~D~~----Ti~e~~g~l~~~~i~~v 159 (306)
-.+..+.+ +..+|++++-. +.+...........+|+|--+.. ..+-..+..|-+ .+-++.-..-..+|+|+
T Consensus 106 e~~~~~~l~~~~vdgiIv~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~GhrrI~~i 185 (330)
T PRK11303 106 EMQCAEHLLQRQVDALIVATSLPPEHPFYQRLQNDGFPIIALDRALDREHFTSVVSDDQDAAEMLAESLLKFPAESILLL 185 (330)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999974899899946888862999999846997899725678888998997219999999999998699979999
Q ss_pred CCCCC--CCC----CHHHCCCCCCEEEEE
Q ss_conf 04555--543----101001233125765
Q gi|255764473|r 160 GDGNN--ILH----SLIEGAARFNYLLNI 182 (306)
Q Consensus 160 Gd~~~--v~h----S~i~~~~~~g~~v~~ 182 (306)
|.... +.+ .+..++...|..+.+
T Consensus 186 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 214 (330)
T PRK11303 186 GALPELSVSFLREQGFRQALKDDPREVHF 214 (330)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68975637999999999999967998059
No 330
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=22.91 E-value=54 Score=13.66 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999
Q gi|255764473|r 14 ISSSNLSCIIEVAKKIK 30 (306)
Q Consensus 14 l~~~~i~~ll~~A~~~k 30 (306)
...++++.+||.+..+.
T Consensus 153 ~G~~~VE~~LDs~hai~ 169 (495)
T COG2719 153 HGVEEVERFLDSCHAIM 169 (495)
T ss_pred HCHHHHHHHHHHHHHHH
T ss_conf 58899999999999999
No 331
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=22.85 E-value=38 Score=14.64 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=32.6
Q ss_pred EEECCCCCHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEE
Q ss_conf 99428883578999-9898634754333321000012321079999975300--1011121
Q gi|255764473|r 49 MIFEKPSTRTRVSF-EVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY--VDAIVMR 106 (306)
Q Consensus 49 ~lF~e~StRTR~SF-e~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~--~D~iviR 106 (306)
.||+-|.-=-++++ .+=++.||.+....+... =|...|.+..|+.. .|++-|=
T Consensus 54 ~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~-----lek~~DL~~iLt~l~~~dvLFID 109 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPA-----LEKAGDLAALLTNLEEGDVLFID 109 (328)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCC-----CCCHHHHHHHHHHCCCCCEEEEH
T ss_conf 576588998899999999998688815624500-----16747899999608878767650
No 332
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=22.82 E-value=54 Score=13.65 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEECCCCC----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4589999999999999999665236665-44379879999428883----578999989863475433332100001232
Q gi|255764473|r 12 SNISSSNLSCIIEVAKKIKNSSENIFEN-KPLSGKVLAMIFEKPST----RTRVSFEVAMKHLGGDTIFLSGSEMQLGRA 86 (306)
Q Consensus 12 ~dl~~~~i~~ll~~A~~~k~~~~~~~~~-~~l~gk~i~~lF~e~St----RTR~SFe~A~~~LG~~~~~~~~~~ss~~kg 86 (306)
...+.+.-..+++.|+++--.+...... ..-+.++|+++....+. +--...+.++.+.|..++..+... ..
T Consensus 26 ~~Vs~~Tr~rV~~aa~eLgY~pn~~Ar~L~~~~s~~Igviv~~~~~~~~~~~~~~i~~~~~~~gy~~~l~~~~~----~~ 101 (335)
T PRK10703 26 RFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWN----NL 101 (335)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHCCCEEEEEECCC----CH
T ss_conf 99899999999999998299978778754117774599995478886506543369999997399799992789----86
Q ss_pred CCHHHHHHHH-HHCCCEEEEEEC--CCCHHHHHHCCCCCCEECCC--CC-CCHHHHHHHHHHH----HHHHCCCCCCCCE
Q ss_conf 1079999975-300101112101--32006776301244124043--33-2024678765576----6420013367730
Q gi|255764473|r 87 ETIGDTAKVL-SRYVDAIVMRTT--NHSRLLELTEYATVPVINAL--TD-NTHPCQIIADIMT----FEEHRGSVKGKLF 156 (306)
Q Consensus 87 Esl~Dt~~~l-s~~~D~iviR~~--~~~~~~~~~~~~~vpvINa~--~~-~~HPtQaL~D~~T----i~e~~g~l~~~~i 156 (306)
|...+....+ +..+|++++=.. .+..+..+.++.++|++--. .. ...+.-..-|-+. .-++.-..-..+|
T Consensus 102 ~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~iP~V~id~~~~~~~~~~~v~~~~~~~~~~a~~~L~~~Ghr~I 181 (335)
T PRK10703 102 EKQRAYLSMLAQKRVDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGHRDI 181 (335)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999558877999768899799999997089988999477777888959974879999999999997599869
Q ss_pred EEECCC
Q ss_conf 461045
Q gi|255764473|r 157 SWSGDG 162 (306)
Q Consensus 157 ~~vGd~ 162 (306)
++++..
T Consensus 182 a~i~~~ 187 (335)
T PRK10703 182 GVIPGP 187 (335)
T ss_pred EEEECC
T ss_conf 999588
No 333
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=22.80 E-value=54 Score=13.65 Aligned_cols=133 Identities=17% Similarity=0.297 Sum_probs=56.4
Q ss_pred EEEEEECC----CCCH---HHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHC-CCEEEEEECCC--
Q ss_conf 79999428----8835---789999898634754333321000-----012321079999975300-10111210132--
Q gi|255764473|r 46 VLAMIFEK----PSTR---TRVSFEVAMKHLGGDTIFLSGSEM-----QLGRAETIGDTAKVLSRY-VDAIVMRTTNH-- 110 (306)
Q Consensus 46 ~i~~lF~e----~StR---TR~SFe~A~~~LG~~~~~~~~~~s-----s~~kgEsl~Dt~~~ls~~-~D~iviR~~~~-- 110 (306)
.|+-+|.. .|+. -+++|+.|+.+.-.+.-.+..... .+...-|++=+.++...+ -++..|=+|.+
T Consensus 4 ~iGaiF~~~~~~~~~~~~~~e~Af~~Av~~iN~~~~iL~~t~L~~~i~~v~~~dsF~~~~~~C~l~~~GV~AIfGP~s~~ 83 (384)
T cd06393 4 RIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGS 83 (384)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHH
T ss_conf 98478513777642000678999999999851685447996579886654779878999999998736937998988667
Q ss_pred --CHHHHHHCCCCCCEECCC-C-----C------CCHH-----HHHHHHHHHHHHHCCCCCCCCEEEECCCC-CCCCCHH
Q ss_conf --006776301244124043-3-----3------2024-----67876557664200133677304610455-5543101
Q gi|255764473|r 111 --SRLLELTEYATVPVINAL-T-----D------NTHP-----CQIIADIMTFEEHRGSVKGKLFSWSGDGN-NILHSLI 170 (306)
Q Consensus 111 --~~~~~~~~~~~vpvINa~-~-----~------~~HP-----tQaL~D~~Ti~e~~g~l~~~~i~~vGd~~-~v~hS~i 170 (306)
..+..++....||-|--. + . .-|| .+|++|+.+-..++ ...+.|--|.+ .-+.-++
T Consensus 84 sa~~v~sic~~l~IPhi~~~~~~~~~~~~~~f~inl~P~~~~l~~Ai~dlV~~~~W~----~~~iiYd~d~gl~~Lq~ll 159 (384)
T cd06393 84 CTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWR----SATVVYDDSTGLIRLQELI 159 (384)
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCC----EEEEEEECCCCHHHHHHHH
T ss_conf 899999985356687163355678867666644871488789999999999867984----7999996771278999999
Q ss_pred HCCCCCCEEEEE
Q ss_conf 001233125765
Q gi|255764473|r 171 EGAARFNYLLNI 182 (306)
Q Consensus 171 ~~~~~~g~~v~~ 182 (306)
.+..+.+..+.+
T Consensus 160 ~~~~~~~~~v~~ 171 (384)
T cd06393 160 MAPSRYNIRLKI 171 (384)
T ss_pred HHHHCCCCEEEE
T ss_conf 753136857999
No 334
>TIGR00195 exoDNase_III exodeoxyribonuclease III; InterPro: IPR000097 DNA damaging agents such as the antitumor drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. Except for Rrp1 and arp, these enzymes are proteins of about 300 amino-acid residues. Rrp1 and arp both contain additional and unrelated sequences in their N-terminal section (about 400 residues for Rrp1 and 270 for arp). The proteins contain glutamate which has been shown , in the Escherichia coli enzyme to bind a divalent metal ion such as magnesium or manganese.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=22.72 E-value=55 Score=13.64 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=54.0
Q ss_pred HHHCCCCCCCCCC---CCCC---CCCCCCHHHHHHHHHHCCCEE-EEEEC-CCCHHHHHHCCCCCC----EECCCCC---
Q ss_conf 8634754333321---0000---123210799999753001011-12101-320067763012441----2404333---
Q gi|255764473|r 66 MKHLGGDTIFLSG---SEMQ---LGRAETIGDTAKVLSRYVDAI-VMRTT-NHSRLLELTEYATVP----VINALTD--- 130 (306)
Q Consensus 66 ~~~LG~~~~~~~~---~~ss---~~kgEsl~Dt~~~ls~~~D~i-viR~~-~~~~~~~~~~~~~vp----vINa~~~--- 130 (306)
..+.|-|+.+-.. +-|. .+|.|.+.|.-.=|+ .+-- .+-+. +.+.=...+++.++- |||.=..
T Consensus 49 ~~~~GYh~f~~~~~~KGy~GVA~~sk~EP~~dV~~G~~--~e~~PaltGdlD~e~R~I~a~~~~~~G~~Tv~N~Y~PnGE 126 (281)
T TIGR00195 49 FEEEGYHVFFSGAKKKGYSGVAIFSKEEPLSDVRYGFG--VEEEPALTGDLDAEGRVITAEFDGFLGLLTVVNGYFPNGE 126 (281)
T ss_pred HHHCCCEEEECCCEEECCCCEEEEECCCCHHHHHCCCC--CCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEECCCC
T ss_conf 97649817873642336430799862688588603678--8776533276121671799975783024899986655984
Q ss_pred -CCHHH--HHHHHHHHHHHHC-C--CCCCCC-EEEECCCCCCCCCHH
Q ss_conf -20246--7876557664200-1--336773-046104555543101
Q gi|255764473|r 131 -NTHPC--QIIADIMTFEEHR-G--SVKGKL-FSWSGDGNNILHSLI 170 (306)
Q Consensus 131 -~~HPt--QaL~D~~Ti~e~~-g--~l~~~~-i~~vGd~~~v~hS~i 170 (306)
..|+. +.=++.+.-.+++ . .-++.. |.||||.| |+|+=+
T Consensus 127 S~~~~~k~~YKl~w~~~l~~yl~~~~~~~~p~v~~CGD~N-iAp~ei 172 (281)
T TIGR00195 127 SRLDSEKLPYKLQWLEALQNYLEKLRDKDKPEVIICGDFN-IAPEEI 172 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCC
T ss_conf 3001455788999999999999998636898899976778-898613
No 335
>PRK09492 treR trehalose repressor; Provisional
Probab=22.41 E-value=55 Score=13.60 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=75.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEECCCCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 589999999999999999665236665-44379879999428883578----9999898634754333321000012321
Q gi|255764473|r 13 NISSSNLSCIIEVAKKIKNSSENIFEN-KPLSGKVLAMIFEKPSTRTR----VSFEVAMKHLGGDTIFLSGSEMQLGRAE 87 (306)
Q Consensus 13 dl~~~~i~~ll~~A~~~k~~~~~~~~~-~~l~gk~i~~lF~e~StRTR----~SFe~A~~~LG~~~~~~~~~~ss~~kgE 87 (306)
..+.+.-+.+++.|+++--.|...... ..-+-++|+.++-..++... -.++.++.+-|-+++......+ .|
T Consensus 30 ~vs~eTr~rV~~~a~elgY~Pn~~Ar~L~~~~t~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~----~~ 105 (315)
T PRK09492 30 KVSPRTRERVEAVINQHGFSPSKSARAMRGQSDKVVGIIVSRLDSPSENLAVQTMLPAFYQQGYDPIIMESQFS----PQ 105 (315)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC----HH
T ss_conf 99999999999999996998077889750488864666226778836789999999999974981899946899----79
Q ss_pred CHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCCC-CCEECCCCCCCHHHHHHHHHH----HHHHHCCCCCCCCEEEEC-
Q ss_conf 0799999753-001011121013200677630124-412404333202467876557----664200133677304610-
Q gi|255764473|r 88 TIGDTAKVLS-RYVDAIVMRTTNHSRLLELTEYAT-VPVINALTDNTHPCQIIADIM----TFEEHRGSVKGKLFSWSG- 160 (306)
Q Consensus 88 sl~Dt~~~ls-~~~D~iviR~~~~~~~~~~~~~~~-vpvINa~~~~~HPtQaL~D~~----Ti~e~~g~l~~~~i~~vG- 160 (306)
..++....+. ..+|++++-.........+..+.. ++++.- +... -..+..|-+ .+-++.-..--.+|+|+|
T Consensus 106 ~~~~~~~~l~~~~vdGiIl~~~~~~~~~~l~~~~~~~v~i~~-~~~~-~~~V~~d~~~~~~~a~~~L~~~Gh~~i~~i~~ 183 (315)
T PRK09492 106 LVNEHLGVLRRRNVDGVILFGFTGITEEMLAPWQDSLVVLAR-DAKG-FSSVCYDDEGAIKLLMQRLYDQGHRHISYLGV 183 (315)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEEEEC-CCCC-CCEEEECHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999999967989899968988889999981798699941-6899-87687657999999999999759986999926
Q ss_pred CCC
Q ss_conf 455
Q gi|255764473|r 161 DGN 163 (306)
Q Consensus 161 d~~ 163 (306)
+.+
T Consensus 184 ~~~ 186 (315)
T PRK09492 184 PHS 186 (315)
T ss_pred CCC
T ss_conf 854
No 336
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952 Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. 2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=22.36 E-value=39 Score=14.59 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=10.9
Q ss_pred CCCCCEEEECCCCCCCCCHHH
Q ss_conf 367730461045555431010
Q gi|255764473|r 151 VKGKLFSWSGDGNNILHSLIE 171 (306)
Q Consensus 151 l~~~~i~~vGd~~~v~hS~i~ 171 (306)
.+|++|.|+-++| -++.++.
T Consensus 173 ~~GK~VLI~AHGN-SLRALvK 192 (248)
T TIGR01258 173 KSGKRVLIAAHGN-SLRALVK 192 (248)
T ss_pred HCCCEEEEEECCH-HHHHHHH
T ss_conf 4689799982280-4899999
No 337
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=22.30 E-value=56 Score=13.59 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHC-CCEEEEEECCCCHHHHHH--CCCCCCEECCCCC-CCHHH
Q ss_conf 9975300-101112101320067763--0124412404333-20246
Q gi|255764473|r 93 AKVLSRY-VDAIVMRTTNHSRLLELT--EYATVPVINALTD-NTHPC 135 (306)
Q Consensus 93 ~~~ls~~-~D~iviR~~~~~~~~~~~--~~~~vpvINa~~~-~~HPt 135 (306)
.+.+..+ .|++|--+|-.. +..+. ...++|+++-.+| ..||+
T Consensus 97 ~~li~~~kPDvII~T~P~~~-l~~lk~~~~~~iP~~tViTD~~~H~~ 142 (388)
T PRK13609 97 KLLLQAEKPDIVINTFPIIA-VPELKKQTGISIPVYNVLTDFCVHKI 142 (388)
T ss_pred HHHHHHCCCCEEEECCCHHH-HHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 99999829599998887899-99999845999988999478520464
No 338
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=22.21 E-value=56 Score=13.57 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCCCCCCCCC
Q ss_conf 9998986347543333210
Q gi|255764473|r 61 SFEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 61 SFe~A~~~LG~~~~~~~~~ 79 (306)
....+..+.|.+|+-+|..
T Consensus 14 ~~a~~la~~G~~V~g~D~d 32 (185)
T pfam03721 14 PTAVCLAEIGHDVVGVDIN 32 (185)
T ss_pred HHHHHHHHCCCEEEEEECC
T ss_conf 9999999489939999799
No 339
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=22.11 E-value=25 Score=15.90 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=18.3
Q ss_pred EECHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 5200001321000024320133222136646630687
Q gi|255764473|r 182 IATPIGSEPRNEYLNWARNQGASVALFHDAVQAVKGA 218 (306)
Q Consensus 182 ~~~P~~~~~~~~~~~~~~~~g~~i~~~~d~~eal~~a 218 (306)
+.+|.|++|.+ +.| +++.|+.+|++++
T Consensus 128 iLGPRGLMPNP-------K~G---TVT~dva~Av~~~ 154 (227)
T TIGR01169 128 ILGPRGLMPNP-------KTG---TVTADVAKAVKEA 154 (227)
T ss_pred HCCCCCCCCCC-------CCC---CCCHHHHHHHHHH
T ss_conf 04788847535-------966---5224379999987
No 340
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=21.96 E-value=57 Score=13.54 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHCCCC-CCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHHHHHCCCCCCCCC---
Q ss_conf 2467876557664200133-677304610455554310100123312576520000132100002432013322213---
Q gi|255764473|r 133 HPCQIIADIMTFEEHRGSV-KGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLNWARNQGASVALF--- 208 (306)
Q Consensus 133 HPtQaL~D~~Ti~e~~g~l-~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~--- 208 (306)
-|+.+++=...+.+ .+.+ .+.++.+.|-.+.|....++++..+|+++..... .++..+++++.|....+.
T Consensus 121 ~~~~~~Ta~~~l~~-~~~~~~g~~vLi~gaaGgVG~~avQlAk~~Ga~Vi~t~~-----s~~k~e~~~~lGA~~vi~~~~ 194 (327)
T PRK10754 121 SFLKGLTVYYLLRK-TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG-----SAQKAQRALKAGAWQVINYRE 194 (327)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHCCCCEEEECCC
T ss_conf 21358879887653-137899999999817761126899999986999999989-----899999999669999998999
Q ss_pred CCHHHHC------CCCCCCC
Q ss_conf 6646630------6873322
Q gi|255764473|r 209 HDAVQAV------KGAHCVF 222 (306)
Q Consensus 209 ~d~~eal------~~aD~V~ 222 (306)
.|+.+.+ +++|+++
T Consensus 195 ~~~~~~i~~~t~g~gvdvv~ 214 (327)
T PRK10754 195 ENIVERVKEITGGKKVRVVY 214 (327)
T ss_pred CCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999986899836999
No 341
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.85 E-value=57 Score=13.53 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCEECC-CCCCCHHHH----HHHH
Q ss_conf 86347543333210000123210799999753001011121013200677630124412404-333202467----8765
Q gi|255764473|r 66 MKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLELTEYATVPVINA-LTDNTHPCQ----IIAD 140 (306)
Q Consensus 66 ~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~~~~~~vpvINa-~~~~~HPtQ----aL~D 140 (306)
...||..+-..-| -|-|+.|..+.-..++.++..|-.......-+.+....|.+-- -= .-++|. .|..
T Consensus 184 l~~lGi~VNvV~P------~Gas~~dl~rL~~A~~Nv~lYrE~g~~aa~~Le~~fg~P~~~~~Pi-Gv~~T~~flrel~~ 256 (524)
T PRK02910 184 LATLGIDVNVVAP------LGASPADLKRLPAAWFNVVLYREIGESAAEYLEREFGMPYVTTVPI-GVGATARFIREVAE 256 (524)
T ss_pred HHHCCCEEEEEEC------CCCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCEECCCCC-CHHHHHHHHHHHHH
T ss_conf 9875966889804------9999788851020407464258777999999998858970103475-41799999999999
Q ss_pred HHHH--------------------H--HH--CCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEECHHCCCCCCCCHH
Q ss_conf 5766--------------------4--20--0133677304610455554310100123312576520000132100002
Q gi|255764473|r 141 IMTF--------------------E--EH--RGSVKGKLFSWSGDGNNILHSLIEGAARFNYLLNIATPIGSEPRNEYLN 196 (306)
Q Consensus 141 ~~Ti--------------------~--e~--~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~v~~~~P~~~~~~~~~~~ 196 (306)
++-+ | +. ...+.|+++.+.||.+.+.--.-.+..-+|+++..++.=.-.....+..
T Consensus 257 ~lg~~~~~~~~~i~~~~~~~s~~~W~srSvD~~~ltgKr~fVfGDaTha~a~~kil~~ElG~~vvg~GTY~r~~Ar~~r~ 336 (524)
T PRK02910 257 LLNLDGADLEAFILDELSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAAKILRDELGFEVVGAGTYLREDARWVRA 336 (524)
T ss_pred HHCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
T ss_conf 96899642255554420142335301213650121364479965607999999998886480787313551877899999
Q ss_pred HHHCCCCCCCCCCCHH
Q ss_conf 4320133222136646
Q gi|255764473|r 197 WARNQGASVALFHDAV 212 (306)
Q Consensus 197 ~~~~~g~~i~~~~d~~ 212 (306)
.++..+.+..+++|..
T Consensus 337 ~~~~~~~e~lItdD~~ 352 (524)
T PRK02910 337 AAKGYGDEALITDDYL 352 (524)
T ss_pred HHHHHCCCCEECCCHH
T ss_conf 9986064506406789
No 342
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=21.79 E-value=42 Score=14.41 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=14.1
Q ss_pred CCCHHHCCCCCCEEEEEECHH
Q ss_conf 431010012331257652000
Q gi|255764473|r 166 LHSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 166 ~hS~i~~~~~~g~~v~~~~P~ 186 (306)
.+|+..-+..+|.+++.++|-
T Consensus 177 tr~lA~e~a~~gIrVNaIaPG 197 (259)
T PRK08213 177 TRALAAEWGPHGIRVNAIAPG 197 (259)
T ss_pred HHHHHHHHHHCCEEEEEEEEC
T ss_conf 999999961039199999779
No 343
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.61 E-value=57 Score=13.50 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=49.4
Q ss_pred CEEEEEECCCC--CHH--HHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHH--
Q ss_conf 87999942888--357--8999989863475--433332100001232107999997530010111210132006776--
Q gi|255764473|r 45 KVLAMIFEKPS--TRT--RVSFEVAMKHLGG--DTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRLLEL-- 116 (306)
Q Consensus 45 k~i~~lF~e~S--tRT--R~SFe~A~~~LG~--~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~~~~-- 116 (306)
++|+.+....+ .++ +-.++.+++.+|. .+...+...+.- +-+.+.-..++..+|+|++=..+...+...
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~---~Q~~~i~~~ia~~~daIiv~~~d~~a~~~~v~ 110 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVA---KQIAQIEDLIAQGVDAIIINPVDPDALTPAVK 110 (322)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH---HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 879999477888189999999999998649955897157888819---99999999985599889992898075899999
Q ss_pred -HCCCCCCEECCCCC
Q ss_conf -30124412404333
Q gi|255764473|r 117 -TEYATVPVINALTD 130 (306)
Q Consensus 117 -~~~~~vpvINa~~~ 130 (306)
+....||||.--++
T Consensus 111 ~a~~aGIpVv~~d~~ 125 (322)
T COG1879 111 KAKAAGIPVVTVDSD 125 (322)
T ss_pred HHHHCCCEEEEECCC
T ss_conf 999779849996167
No 344
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.50 E-value=50 Score=13.87 Aligned_cols=136 Identities=12% Similarity=0.015 Sum_probs=59.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCHHHHHH-----HHHHCCCEEEEEECCCCHHHHHHC
Q ss_conf 799994288835789999898634754333321000--0123210799999-----753001011121013200677630
Q gi|255764473|r 46 VLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEM--QLGRAETIGDTAK-----VLSRYVDAIVMRTTNHSRLLELTE 118 (306)
Q Consensus 46 ~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~~~~~s--s~~kgEsl~Dt~~-----~ls~~~D~iviR~~~~~~~~~~~~ 118 (306)
|+.+.=-=.|--+| ++.+++++||.+.+.+=.... -.-+|--+.|..- +++...|...-++ .....++..+
T Consensus 66 TlvT~Gg~QSNh~r-~tAa~A~~lGlk~v~ile~~~~~y~~~gn~Ll~~~~G~~~~~~~~~~d~~~~~~-~~~~~e~~~~ 143 (323)
T COG2515 66 TLVTYGGIQSNHVR-QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINAS-AEELAEEVRK 143 (323)
T ss_pred EEEEECCCCHHHHH-HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCEEEEECCCCCHHHCHH-HHHHHHHHHH
T ss_conf 79981651025899-999999865971899981550103566400123324765787158888643310-6789999996
Q ss_pred CCCC-CEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCE---EEECCCCCCCCCHHHCCCCCCEEEEEECH
Q ss_conf 1244-1240433320246787655766420013367-730---46104555543101001233125765200
Q gi|255764473|r 119 YATV-PVINALTDNTHPCQIIADIMTFEEHRGSVKG-KLF---SWSGDGNNILHSLIEGAARFNYLLNIATP 185 (306)
Q Consensus 119 ~~~v-pvINa~~~~~HPtQaL~D~~Ti~e~~g~l~~-~~i---~~vGd~~~v~hS~i~~~~~~g~~v~~~~P 185 (306)
...- -||-.|+ +||--+|.=+-.-.|..--.++ .++ +.+.-...+.--++..++.++..+.+++.
T Consensus 144 ~g~kpyvIp~gG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~ 213 (323)
T COG2515 144 QGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGI 213 (323)
T ss_pred CCCCCCEECCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 179983722677--6855441288899999999963137777999678851089999876510688846887
No 345
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=21.45 E-value=58 Score=13.48 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 998986347543333210
Q gi|255764473|r 62 FEVAMKHLGGDTIFLSGS 79 (306)
Q Consensus 62 Fe~A~~~LG~~~~~~~~~ 79 (306)
|..-+.+.|.+.+..+.+
T Consensus 24 ~A~~~~~agvD~iLVGDS 41 (240)
T cd06556 24 MAKQFADAGLNVMLVGDS 41 (240)
T ss_pred HHHHHHHCCCCEEEEECC
T ss_conf 999998779989998067
No 346
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.39 E-value=58 Score=13.47 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECCC-CHHHHHHCCCCCCEECCCCC---CC
Q ss_conf 789999898634754333321000012321079999975-30010111210132-00677630124412404333---20
Q gi|255764473|r 58 TRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTNH-SRLLELTEYATVPVINALTD---NT 132 (306)
Q Consensus 58 TR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~~-~~~~~~~~~~~vpvINa~~~---~~ 132 (306)
--.++|.++.+.|.+++..+... ..|.-.+.++.+ +..+|++++-.... ..........++|||..+.. ..
T Consensus 17 i~~gi~~~a~~~gy~l~i~~s~~----~~~~e~~~i~~l~~~~vDgiIl~~~~~~~~~~~~~~~~~iPvV~i~~~~~~~~ 92 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDN----DPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIPELG 92 (267)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 99999999998699899997899----98999999999996699999985877998999999976998999688578999
Q ss_pred HHHHHHHHHHH----HHHHCCCCCCCCEEEECCC
Q ss_conf 24678765576----6420013367730461045
Q gi|255764473|r 133 HPCQIIADIMT----FEEHRGSVKGKLFSWSGDG 162 (306)
Q Consensus 133 HPtQaL~D~~T----i~e~~g~l~~~~i~~vGd~ 162 (306)
.|+ +-.|-+. .-++.-..-..+|+++|.+
T Consensus 93 ~~~-V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~ 125 (267)
T cd06283 93 VDT-VTLDNYEAAKEAVDHLIEKGYERILFVTEP 125 (267)
T ss_pred CCE-EEECHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 988-997779999999999997599729999568
No 347
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=21.34 E-value=43 Score=14.33 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=7.9
Q ss_pred HHHHHCCCCCCEECCCC
Q ss_conf 67763012441240433
Q gi|255764473|r 113 LLELTEYATVPVINALT 129 (306)
Q Consensus 113 ~~~~~~~~~vpvINa~~ 129 (306)
+-++|+.-+.|||--=|
T Consensus 151 Lm~~AerF~~PIi~fiD 167 (329)
T TIGR00513 151 LMKMAERFNLPIITFID 167 (329)
T ss_pred HHHHHHHCCCCEEEEEC
T ss_conf 99877761798588653
No 348
>pfam11339 DUF3141 Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.32 E-value=52 Score=13.80 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHH---HHHHHHHHCCCCCCCCEEEE
Q ss_conf 333202467876---55766420013367730461
Q gi|255764473|r 128 LTDNTHPCQIIA---DIMTFEEHRGSVKGKLFSWS 159 (306)
Q Consensus 128 ~~~~~HPtQaL~---D~~Ti~e~~g~l~~~~i~~v 159 (306)
||+..-|-|||- |+|.=-+. -...|.+|+|+
T Consensus 307 GDNITPPqQAL~WI~dlY~~~~e-i~a~gQ~IVY~ 340 (581)
T pfam11339 307 GDNITPPQQALNWIADLYADVEE-IRAHGQTIVYC 340 (581)
T ss_pred CCCCCCCHHHHCCHHHHCCCHHH-HHHCCCEEEEE
T ss_conf 88899965775628876489999-98589879998
No 349
>PRK07791 short chain dehydrogenase; Provisional
Probab=21.26 E-value=42 Score=14.40 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=15.7
Q ss_pred CCCHHHCCCCCCEEEEEECHH
Q ss_conf 431010012331257652000
Q gi|255764473|r 166 LHSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 166 ~hS~i~~~~~~g~~v~~~~P~ 186 (306)
.+|+..-+..+|..++-++|-
T Consensus 181 Tr~lA~Ela~~gIrVNaVaPg 201 (285)
T PRK07791 181 TLVAAAELGRYGVTVNAIAPA 201 (285)
T ss_pred HHHHHHHHHHCCEEEEEECCC
T ss_conf 999999963129599998377
No 350
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.22 E-value=52 Score=13.77 Aligned_cols=14 Identities=7% Similarity=-0.092 Sum_probs=8.4
Q ss_pred CCHHHCCCCCCEEE
Q ss_conf 31010012331257
Q gi|255764473|r 167 HSLIEGAARFNYLL 180 (306)
Q Consensus 167 hS~i~~~~~~g~~v 180 (306)
.++-..+.+||+++
T Consensus 187 ~af~Yfa~~ygl~~ 200 (286)
T cd01019 187 DAYGYFEKRYGLTQ 200 (286)
T ss_pred CCHHHHHHHCCCEE
T ss_conf 63689998669838
No 351
>PTZ00123 phosphoglycerate mutase I; Provisional
Probab=21.20 E-value=41 Score=14.48 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=37.1
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 45899999999999999996652366654437987999942888357899998986347543
Q gi|255764473|r 12 SNISSSNLSCIIEVAKKIKNSSENIFENKPLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDT 73 (306)
Q Consensus 12 ~dl~~~~i~~ll~~A~~~k~~~~~~~~~~~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~ 73 (306)
.+||...+..--..+..+|+..-. +-.+|-=+=.|+.-+-++....||-.-
T Consensus 13 v~Lt~~G~~qA~~ag~~Lk~~~~~-----------fd~~~TS~L~RA~~Ta~iIL~~l~~~~ 63 (235)
T PTZ00123 13 VDLSEKGVQEAREAGELLKEEGFR-----------FDVVYTSVLKRAIKTANIVLETLNQLW 63 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-----------CCEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 995989999999999999975998-----------898985611999999999997305678
No 352
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.15 E-value=59 Score=13.44 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECC-CCHHHHHHCCCCCCEECCCCCC--
Q ss_conf 35789999898634754333321000012321079999975-3001011121013-2006776301244124043332--
Q gi|255764473|r 56 TRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTN-HSRLLELTEYATVPVINALTDN-- 131 (306)
Q Consensus 56 tRTR~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~-~~~~~~~~~~~~vpvINa~~~~-- 131 (306)
++--...|.++.+-|-+++..+.... . |.-++..+.+ +..+|++++=... ...+..+ ...++|++-.+...
T Consensus 18 ~~l~~gie~~~~~~Gy~lll~~~~~~-~---~~e~~~~~~l~~~~vdGiI~~~~~~~~~~~~l-~~~~~P~V~id~~~~~ 92 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDE-D---EEEFELPSFLEDGKVDGIILLGGISTEYIKEI-KELGIPFVLVDHYIPN 92 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC-H---HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHCCCCEEEECCCCCC
T ss_conf 99999999999984998999938999-8---99999999999489878999789997999999-9759989996776899
Q ss_pred -CHHHHHHHHHHH----HHHHCCCCCCCCEEEECCCCC--CCCCH----HHCCCCCCE
Q ss_conf -024678765576----642001336773046104555--54310----100123312
Q gi|255764473|r 132 -THPCQIIADIMT----FEEHRGSVKGKLFSWSGDGNN--ILHSL----IEGAARFNY 178 (306)
Q Consensus 132 -~HPtQaL~D~~T----i~e~~g~l~~~~i~~vGd~~~--v~hS~----i~~~~~~g~ 178 (306)
.-| .+..|-+. +-++.-..--.+|+++|.... ....+ ..++...|.
T Consensus 93 ~~~~-~V~~Dn~~a~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~R~~Gf~~al~~~gl 149 (268)
T cd06277 93 EKAD-CVLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKKALLDHGI 149 (268)
T ss_pred CCCC-EEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9998-89966599999999999970998369972788881299999999999998599
No 353
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=21.06 E-value=59 Score=13.42 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEE-EEEECHHCCCCCCCCHHHHHCCCCCCCCC---CC
Q ss_conf 678765576642001336773046104555543101001233125-76520000132100002432013322213---66
Q gi|255764473|r 135 CQIIADIMTFEEHRGSVKGKLFSWSGDGNNILHSLIEGAARFNYL-LNIATPIGSEPRNEYLNWARNQGASVALF---HD 210 (306)
Q Consensus 135 tQaL~D~~Ti~e~~g~l~~~~i~~vGd~~~v~hS~i~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~i~~~---~d 210 (306)
|..++-.+...+..+--.|.+|++.|.+ -+....+.++..+|.. +..+.+ .+.-++.+++.|....+. .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~g~~VlV~GaG-~iGl~a~~~ak~~Ga~~Vi~~d~-----~~~rl~~A~~lGa~~~i~~~~~~ 232 (358)
T TIGR03451 159 CGVMAGLGAAVNTGGVKRGDSVAVIGCG-GVGDAAIAGAALAGASKIIAVDI-----DDRKLEWAREFGATHTVNSSGTD 232 (358)
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHCCCEEEECCCCCC
T ss_conf 2144546889864079999889996737-69999999999839918999919-----88999999965990997399878
Q ss_pred HHHHCC------CCCCCC
Q ss_conf 466306------873322
Q gi|255764473|r 211 AVQAVK------GAHCVF 222 (306)
Q Consensus 211 ~~eal~------~aD~V~ 222 (306)
+.+.++ ++|+|+
T Consensus 233 ~~~~v~~~t~g~G~Dvvi 250 (358)
T TIGR03451 233 PVEAIRALTGGFGADVVI 250 (358)
T ss_pred HHHHHHHHHCCCCCCEEE
T ss_conf 899999985898874999
No 354
>KOG1191 consensus
Probab=21.05 E-value=59 Score=13.42 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC-CCCC----------CCCCCCCCHHHHHHH---------HHHC-
Q ss_conf 437987999942888357899998986347543333-2100----------001232107999997---------5300-
Q gi|255764473|r 41 PLSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFL-SGSE----------MQLGRAETIGDTAKV---------LSRY- 99 (306)
Q Consensus 41 ~l~gk~i~~lF~e~StRTR~SFe~A~~~LG~~~~~~-~~~~----------ss~~kgEsl~Dt~~~---------ls~~- 99 (306)
-+.|--++=++.+.|.-+-..+..|+..-|..-+-+ .+++ -++.+-|-+.|.+.. ++..
T Consensus 121 sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~ 200 (531)
T KOG1191 121 SFTGEDVVELQTHGSSAVVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVA 200 (531)
T ss_pred EEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 23433258899834760013677776541677864358234543434415312555248234421102766544465413
Q ss_pred C-C-EEEEEECCCCHHHHHHCCC--------CCCEECCCCC-CCHHHHHHH-HHHHHHHHCC---CC-CCCCEEEECCCC
Q ss_conf 1-0-1112101320067763012--------4412404333-202467876-5576642001---33-677304610455
Q gi|255764473|r 100 V-D-AIVMRTTNHSRLLELTEYA--------TVPVINALTD-NTHPCQIIA-DIMTFEEHRG---SV-KGKLFSWSGDGN 163 (306)
Q Consensus 100 ~-D-~iviR~~~~~~~~~~~~~~--------~vpvINa~~~-~~HPtQaL~-D~~Ti~e~~g---~l-~~~~i~~vGd~~ 163 (306)
. + .+..++. ..+.+.-... ..|..--++. .-|-.|.|. |+.|..+... .+ +|+.|+++|-+|
T Consensus 201 g~~~~l~~~~r--~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPN 278 (531)
T KOG1191 201 GEALALCFGWR--KILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPN 278 (531)
T ss_pred CHHHHHHHHHH--HHHHHHHHCCCEEECHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 31677665389--9999987322024144330755540300203678888999998887534677763577289976998
Q ss_pred CCCCCHHHCCCCCCEEEEEECHHC
Q ss_conf 554310100123312576520000
Q gi|255764473|r 164 NILHSLIEGAARFNYLLNIATPIG 187 (306)
Q Consensus 164 ~v~hS~i~~~~~~g~~v~~~~P~~ 187 (306)
-=.-|++.++.+ -++.+++|..
T Consensus 279 vGKSSLlNaL~~--~drsIVSpv~ 300 (531)
T KOG1191 279 VGKSSLLNALSR--EDRSIVSPVP 300 (531)
T ss_pred CCHHHHHHHHHC--CCCEEECCCC
T ss_conf 778899988750--7744767899
No 355
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=20.93 E-value=55 Score=13.63 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=9.8
Q ss_pred CCCEEEECCCCCCCCC
Q ss_conf 7730461045555431
Q gi|255764473|r 153 GKLFSWSGDGNNILHS 168 (306)
Q Consensus 153 ~~~i~~vGd~~~v~hS 168 (306)
..+|+++|-+| |.-|
T Consensus 172 ~iriaivGrPN-vGKS 186 (429)
T TIGR03594 172 PIKIAIIGRPN-VGKS 186 (429)
T ss_pred CEEEEEECCCC-CCHH
T ss_conf 52699974887-6546
No 356
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=20.91 E-value=59 Score=13.40 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=51.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCEEEEEECC-CCHHHHHHCCCCCCEECCCCC-CCHHH
Q ss_conf 89999898634754333321000012321079999975-3001011121013-200677630124412404333-20246
Q gi|255764473|r 59 RVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVL-SRYVDAIVMRTTN-HSRLLELTEYATVPVINALTD-NTHPC 135 (306)
Q Consensus 59 R~SFe~A~~~LG~~~~~~~~~~ss~~kgEsl~Dt~~~l-s~~~D~iviR~~~-~~~~~~~~~~~~vpvINa~~~-~~HPt 135 (306)
=-..|.++.+-|-+++..+...+ . |.-.+..+.+ +..+|++++-... .....+..+..++||+--+.. ...||
T Consensus 18 ~~gie~~~~~~Gy~~ll~~s~~~-~---~~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~ 93 (259)
T cd01542 18 VKGILAALYENGYQMLLMNTNFS-I---EKEIEALELLARQKVDGIILLATTITDEHREAIKKLNVPVVVVGQDYPGISS 93 (259)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC-H---HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCE
T ss_conf 99999999986998999978999-8---9999999999956999899937777759999999669999995986899988
Q ss_pred HHHHHHHH----HHHHCCCCCCCCEEEECC
Q ss_conf 78765576----642001336773046104
Q gi|255764473|r 136 QIIADIMT----FEEHRGSVKGKLFSWSGD 161 (306)
Q Consensus 136 QaL~D~~T----i~e~~g~l~~~~i~~vGd 161 (306)
+..|-+. .-++.-..-..+|+++|.
T Consensus 94 -V~~Dn~~~~~~a~~~L~~~Ghr~I~~i~~ 122 (259)
T cd01542 94 -VVYDDYGAGYELGEYLAQQGHKNIAYLGV 122 (259)
T ss_pred -EEECHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf -99867999999999999828985999955
No 357
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.83 E-value=60 Score=13.39 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCCCCCCC
Q ss_conf 99989863475433332
Q gi|255764473|r 61 SFEVAMKHLGGDTIFLS 77 (306)
Q Consensus 61 SFe~A~~~LG~~~~~~~ 77 (306)
|--....++|..+...|
T Consensus 21 a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 21 AAARFLLKLGAEVTVSD 37 (448)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999997798699983
No 358
>KOG3042 consensus
Probab=20.82 E-value=60 Score=13.39 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=7.3
Q ss_pred CCCEEEEEECCCC
Q ss_conf 7987999942888
Q gi|255764473|r 43 SGKVLAMIFEKPS 55 (306)
Q Consensus 43 ~gk~i~~lF~e~S 55 (306)
..++++.+|-+||
T Consensus 50 ~~~tVVSIfVNP~ 62 (283)
T KOG3042 50 NTYTVVSIFVNPS 62 (283)
T ss_pred CCEEEEEEEECHH
T ss_conf 7469999996624
No 359
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.82 E-value=46 Score=14.13 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=8.2
Q ss_pred CCCCC-EEEEEECHHC
Q ss_conf 12331-2576520000
Q gi|255764473|r 173 AARFN-YLLNIATPIG 187 (306)
Q Consensus 173 ~~~~g-~~v~~~~P~~ 187 (306)
...+| .+++.++|-.
T Consensus 178 ~~~~g~IrVN~i~PG~ 193 (239)
T PRK08703 178 WERFGNLRANVLVPGP 193 (239)
T ss_pred HCCCCCEEEEEEEECC
T ss_conf 4789898999998488
No 360
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.66 E-value=47 Score=14.08 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=11.5
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+|+..-+...|.+++.++|-
T Consensus 167 ~~lA~e~~~~gIrvN~V~PG 186 (248)
T PRK05557 167 KSLARELASRGITVNAVAPG 186 (248)
T ss_pred HHHHHHHHHHCEEEEEEEEC
T ss_conf 99999853319499999748
No 361
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.61 E-value=50 Score=13.90 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=7.8
Q ss_pred CHHHCCHHHHHHHHHH
Q ss_conf 8445899999999999
Q gi|255764473|r 10 DLSNISSSNLSCIIEV 25 (306)
Q Consensus 10 ~~~dl~~~~i~~ll~~ 25 (306)
.+.|.+.+.++.-.+.
T Consensus 29 ~l~D~~~~~~~~~~~~ 44 (284)
T PRK07819 29 LVFETTEEAATAGRNR 44 (284)
T ss_pred EEEECCHHHHHHHHHH
T ss_conf 9997988999999999
No 362
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=20.53 E-value=60 Score=13.35 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8771784458999999999999999966523
Q gi|255764473|r 5 PKHFADLSNISSSNLSCIIEVAKKIKNSSEN 35 (306)
Q Consensus 5 ~k~~l~~~dl~~~~i~~ll~~A~~~k~~~~~ 35 (306)
++|+-++.|++.+++..++..++++...-.+
T Consensus 26 k~h~~~l~dl~~~~~~~l~~~~~~~~~~l~~ 56 (86)
T cd00468 26 KRHVETLPDLDEALLADLVITAQRVAAELEK 56 (86)
T ss_pred CHHHCCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 2241993469999999999999999999997
No 363
>PRK06223 malate dehydrogenase; Reviewed
Probab=20.50 E-value=60 Score=13.35 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHHHHC-CCEEEEE--ECCCCHHHHHHCCCCCC---EECCCC
Q ss_conf 999975300-1011121--01320067763012441---240433
Q gi|255764473|r 91 DTAKVLSRY-VDAIVMR--TTNHSRLLELTEYATVP---VINALT 129 (306)
Q Consensus 91 Dt~~~ls~~-~D~iviR--~~~~~~~~~~~~~~~vp---vINa~~ 129 (306)
+.+.-+..+ .+++++= .|-+.....+.+.+..| ||-.|+
T Consensus 100 ~i~~~i~~~~p~~iilvvsNPvDv~t~~~~k~sg~p~~rviG~gT 144 (312)
T PRK06223 100 DVGEGIKKYAPDAIVIVITNPVDAMTYVALKESGFPKERVIGMGG 144 (312)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCH
T ss_conf 999999840998189993693689999999860999888114311
No 364
>PRK06721 threonine synthase; Reviewed
Probab=20.46 E-value=61 Score=13.34 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=52.0
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC---HHHHHHCCCCCCEE
Q ss_conf 942888357899998986347543333210-00012321079999975300101112101320---06776301244124
Q gi|255764473|r 50 IFEKPSTRTRVSFEVAMKHLGGDTIFLSGS-EMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS---RLLELTEYATVPVI 125 (306)
Q Consensus 50 lF~e~StRTR~SFe~A~~~LG~~~~~~~~~-~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~---~~~~~~~~~~vpvI 125 (306)
+.+-+|-=|=.|...+|.++|.+++.+=+. ..+..|- ..+......++.+...-+. ...++++.....++
T Consensus 78 vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~~Ki------~~~~~~GAevi~v~~~~~~~~~~~~~~~~~~~~~~~ 151 (352)
T PRK06721 78 IICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKL------AQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLV 151 (352)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH------HHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 99978567999999999984896699924776727799------999864986998089999999999999985498652
Q ss_pred CCCCCCCHHHHHHHH---HHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 043332024678765---576642001336773046104555
Q gi|255764473|r 126 NALTDNTHPCQIIAD---IMTFEEHRGSVKGKLFSWSGDGNN 164 (306)
Q Consensus 126 Na~~~~~HPtQaL~D---~~Ti~e~~g~l~~~~i~~vGd~~~ 164 (306)
|.-+ |-+.-.- .+-|.|..+..-+.-++-+|.++.
T Consensus 152 ~~~n----p~~ieG~~Ti~~EI~eQl~~~pD~vv~pvG~Gg~ 189 (352)
T PRK06721 152 NSVN----PYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGN 189 (352)
T ss_pred CCCC----HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf 2578----1666410437878999819999989991797099
No 365
>PRK07806 short chain dehydrogenase; Provisional
Probab=20.36 E-value=45 Score=14.20 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=7.1
Q ss_pred CCCCCCEEEEEECH
Q ss_conf 01233125765200
Q gi|255764473|r 172 GAARFNYLLNIATP 185 (306)
Q Consensus 172 ~~~~~g~~v~~~~P 185 (306)
-+...|..++.++|
T Consensus 170 ela~~gIrvn~v~p 183 (248)
T PRK07806 170 ELAHAGIGFVVVSG 183 (248)
T ss_pred HHHHHCCEEEEEEC
T ss_conf 97765988999727
No 366
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=20.29 E-value=61 Score=13.32 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999665236665
Q gi|255764473|r 17 SNLSCIIEVAKKIKNSSENIFEN 39 (306)
Q Consensus 17 ~~i~~ll~~A~~~k~~~~~~~~~ 39 (306)
|++..|+-.|..+++.+..+..-
T Consensus 7 E~~l~Ll~~A~~~~r~~~~~~~v 29 (350)
T TIGR00433 7 EDLLDLLYEAFQIHRKHFNPRKV 29 (350)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 13799999999999873374802
No 367
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=20.25 E-value=61 Score=13.31 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHH---HHHHCCCCCCEECCCCC
Q ss_conf 7899998986347-5433332100001232107999997530010111210132006---77630124412404333
Q gi|255764473|r 58 TRVSFEVAMKHLG-GDTIFLSGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHSRL---LELTEYATVPVINALTD 130 (306)
Q Consensus 58 TR~SFe~A~~~LG-~~~~~~~~~~ss~~kgEsl~Dt~~~ls~~~D~iviR~~~~~~~---~~~~~~~~vpvINa~~~ 130 (306)
-.-.+|.++.++| -+++..+.... ..+- ....-..++..+|+|++-..+...+ .+-+....+|||.-...
T Consensus 17 ~~~gie~~A~~~~g~~~~v~da~~d-~~~Q--~~~ie~li~~~vD~iiv~p~d~~~~~~~l~~a~~agIPVV~~d~~ 90 (270)
T cd06308 17 MNDEIQREASNYPDVELIIADAADD-NSKQ--VADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-HHHH--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999759978999679899-9999--999999998499999996488520089999999859919994588
No 368
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=20.18 E-value=61 Score=13.30 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH--HCCCCCCCCEEEECCC----------------CCCCCCHHHCCCCCCEEEEEEC-HHCCCCC
Q ss_conf 24678765576642--0013367730461045----------------5554310100123312576520-0001321
Q gi|255764473|r 133 HPCQIIADIMTFEE--HRGSVKGKLFSWSGDG----------------NNILHSLIEGAARFNYLLNIAT-PIGSEPR 191 (306)
Q Consensus 133 HPtQaL~D~~Ti~e--~~g~l~~~~i~~vGd~----------------~~v~hS~i~~~~~~g~~v~~~~-P~~~~~~ 191 (306)
.|.+.+.-+..+.. ..+.++|++|.+.+-+ +....++.+.+...|.+|++++ |..+.+|
T Consensus 235 ep~~Iv~~i~~~l~~~~~~~L~GkkVLITAGpT~E~IDPVR~IsN~SSGKmG~aiA~aa~~rGA~VtLIsGp~~l~~P 312 (476)
T PRK13982 235 EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLRDP 312 (476)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 999999999998721455556798899966887122267455776685199999999999679979999566777789
No 369
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=20.13 E-value=48 Score=14.00 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=13.1
Q ss_pred CCHHHCCCCCCEEEEEECHHC
Q ss_conf 310100123312576520000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPIG 187 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~~ 187 (306)
+|+..-+...|.+++-++|-.
T Consensus 170 k~lA~ela~~gIrVN~I~PG~ 190 (261)
T PRK08936 170 ETLAMEYAPKGIRVNNIGPGA 190 (261)
T ss_pred HHHHHHHHHHCEEEEEEEECC
T ss_conf 999999735395999997898
No 370
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.09 E-value=45 Score=14.16 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=12.8
Q ss_pred CCHHHCCCCCCEEEEEECHH
Q ss_conf 31010012331257652000
Q gi|255764473|r 167 HSLIEGAARFNYLLNIATPI 186 (306)
Q Consensus 167 hS~i~~~~~~g~~v~~~~P~ 186 (306)
+++..-++++|..++.++|-
T Consensus 175 r~lA~ela~~gIrVN~I~PG 194 (259)
T PRK06124 175 RALAAEFGPHGITSNAIAPG 194 (259)
T ss_pred HHHHHHHCCCCEEEEEEEEC
T ss_conf 99999965139799999758
No 371
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=20.09 E-value=55 Score=13.62 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.4
Q ss_pred CCCCHHHCCCCC
Q ss_conf 543101001233
Q gi|255764473|r 165 ILHSLIEGAARF 176 (306)
Q Consensus 165 v~hS~i~~~~~~ 176 (306)
|++|+++++.+|
T Consensus 506 Vf~SL~~~L~~L 517 (1384)
T TIGR02025 506 VFESLYELLKRL 517 (1384)
T ss_pred HHHHHHHHHHHH
T ss_conf 368999999998
No 372
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.02 E-value=51 Score=13.83 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.9
Q ss_pred CCCCCEEECCCC
Q ss_conf 898729925999
Q gi|255764473|r 254 AHPDALFMHCLP 265 (306)
Q Consensus 254 a~~~~~vmHplP 265 (306)
++-....+.||=
T Consensus 239 tg~kv~~ldpL~ 250 (266)
T cd01018 239 IGAKVVTIDPLA 250 (266)
T ss_pred HCCCEEEECCCC
T ss_conf 099379967864
No 373
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.01 E-value=62 Score=13.28 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=43.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCC------CCCCCCCCCCCCCCCHHHHH---HHHHHCCCEEEEEECCC----CH
Q ss_conf 7999942888357899998986347543------33321000012321079999---97530010111210132----00
Q gi|255764473|r 46 VLAMIFEKPSTRTRVSFEVAMKHLGGDT------IFLSGSEMQLGRAETIGDTA---KVLSRYVDAIVMRTTNH----SR 112 (306)
Q Consensus 46 ~i~~lF~e~StRTR~SFe~A~~~LG~~~------~~~~~~~ss~~kgEsl~Dt~---~~ls~~~D~iviR~~~~----~~ 112 (306)
+|+-+|++.+----..|..|+.++..+. ..+.+..-.+...-|++=+- ..++..+ ..|=+|.+ ..
T Consensus 1 ~IG~iF~~~~~~~~~AF~~Av~~~N~~~~~~~~~~~L~~~i~~v~~~DsF~~~~~~C~ll~~GV--~AIfGpss~~s~~~ 78 (372)
T cd06387 1 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGV--YAIFGFYDQMSMNT 78 (372)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCC--EEEECCCCHHHHHH
T ss_conf 9456606997789999999999852683235676066335676688981799999999875694--79987797778999
Q ss_pred HHHHHCCCCCCEECCC-C--C------CCHHH--HHHHHHHHHHHH
Q ss_conf 6776301244124043-3--3------20246--787655766420
Q gi|255764473|r 113 LLELTEYATVPVINAL-T--D------NTHPC--QIIADIMTFEEH 147 (306)
Q Consensus 113 ~~~~~~~~~vpvINa~-~--~------~~HPt--QaL~D~~Ti~e~ 147 (306)
+..+.....||.|..- . . .-||. +|++|+.+-.++
T Consensus 79 vqSic~~l~IP~I~~~~p~~~~~~~~l~l~P~l~~A~~dlv~~~~W 124 (372)
T cd06387 79 LTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKW 124 (372)
T ss_pred HHHHHCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 9997378888704614788878733685484278999999996798
Done!