HHsearch alignment for GI: 255764474 and conserved domain: COG1519
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].
Probab=99.41 E-value=7.5e-10 Score=85.42 Aligned_cols=244 Identities=21% Similarity=0.229 Sum_probs=155.8
Q ss_pred HHHHCCCEEEEECCHH------HHHHHHHHHHHHHHCCEEEECCHHHHHHCC----CCEEEECCCCCHHHH-CCCC----
Q ss_conf 9970998199975745------620113479899626689988989997436----883997488277782-3784----
Q gi|255764474|r 87 RDVLRMPLKLVFTSPS------QRNHSRWTRYLISRMDEVITTSQKSARFIE----RPSTVIMHGVDTERF-RPTS---- 151 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~d~ii~~s~~~~~~~~----~~~~vi~~gid~~~~-~~~~---- 151 (352)
T Consensus 142 ~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GN---lKfd~~~~~~~~~ 218 (419)
T COG1519 142 LKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGN---LKFDIEPPPQLAA 218 (419)
T ss_pred HHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCEEEECC---EEECCCCCHHHHH
T ss_conf 9876998999942302325777987789999999742333454888899999649861386333---2423778732489
Q ss_pred CHHHHHHHCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC---
Q ss_conf 32687887288988727999512264451236665456530047740588631333210001466776443112332---
Q gi|255764474|r 152 NKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKK--- 228 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~i~~~~l~~--- 228 (352)
T Consensus 219 ~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVP----RHpERf~~v~~l~~~~gl~~~~r 290 (419)
T COG1519 219 ELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVP----RHPERFKAVENLLKRKGLSVTRR 290 (419)
T ss_pred HHHHHHHHCCCC--CCEEEEECC--CCCHHHHHHHHHHHHHHHCCCCEEEEEC----CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999850888--855999547--7863889999999999638995699915----87556799999999759818861
Q ss_pred ----------CCCCCCCCCCCCCCCHHHHH-HCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCHHCCC-CCCCEEEEE
Q ss_conf ----------21222222331000000000-001233322222210000010011102-78841010023-488424996
Q gi|255764474|r 229 ----------RILFIDEQSSIEDWYRALNI-FVAPPLYEGFGLTPLEAMASGIPVVAS-NTGVFSELLDP-ENAKAGVIV 295 (352)
Q Consensus 229 ----------~V~~~g~~~~~~~~~~~adi-~i~pS~~Eg~gl~~lEAma~G~PvI~s-~~~~~~e~i~~-~~g~~G~~~ 295 (352)
T Consensus 291 S~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v 370 (419)
T COG1519 291 SQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQV 370 (419)
T ss_pred CCCCCCCCCCCEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 37899988886899962868999973432799877446778988223787089788777513589999999866986997
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 599989999999999869899999999999999982998999999999999
Q gi|255764474|r 296 PPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYD 346 (352)
Q Consensus 296 ~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~a~~~~~iY~ 346 (352)
T Consensus 371 ~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~---~gal~r~l~~l~ 416 (419)
T COG1519 371 E--DADLLAKAVELLLADEDKREAYGRAGLEFLAQN---RGALARTLEALK 416 (419)
T ss_pred C--CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_conf 7--889999999997078899999999899999986---779999999755