HHsearch alignment for GI: 255764474 and conserved domain: pfam02684
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=98.73 E-value=3.4e-06 Score=60.85 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCC------C-------CCCCCCHHH-----------HHHHHHHHHHCCCEEEEECCCH
Q ss_conf 888999999971985999805886------6-------562347899-----------8998875432597089962854
Q gi|255764474|r 23 TVFGLCPIQRKLGQRLVVFGYCLP------K-------NIPSIGISS-----------LLTCWKKPIGQNSRIWHARRNN 78 (352)
Q Consensus 23 ~v~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~-----------~~~~~~~~~~~~~~ivh~~~~~ 78 (352)
T Consensus 13 ~ga~Li~~Lk~~~p~i~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~evl~~l~~l~~~~~~~~~~i~~~~PD~vIlID~p 92 (373)
T pfam02684 13 LGGELIQNLKEHYPNLRFIGVGGPKMEAEGFESLANMEEISVMGFIEVLGRLFKLLKIYQKVVKNILKKKPDTLILIDAP 92 (373)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999983098948999880899977995347727841401999998999999999999998742699889997176
Q ss_pred --HHHHHHHHHHHHCCCEEEEECCHHHHH--HHHHHHHHHHHCCEEEECCHHHHHHCCC---CEEEECCCCCHHHHCCCC
Q ss_conf --689999999970998199975745620--1134798996266899889899974368---839974882777823784
Q gi|255764474|r 79 --EMLLGVMMRDVLRMPLKLVFTSPSQRN--HSRWTRYLISRMDEVITTSQKSARFIER---PSTVIMHGVDTERFRPTS 151 (352)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~d~ii~~s~~~~~~~~~---~~~vi~~gid~~~~~~~~ 151 (352)
T Consensus 93 gFNlrlak~lkk-~g~~ipvi~yV~PqvWAWr~~R~k~i~~~~D~ll~IfPFE~~~y~~~gv~~~fVGHPl-~d~~~~~~ 170 (373)
T pfam02684 93 DFNLRLAKKLRK-LGPKLKIIHYVSPSVWAWRPKRAKIIAKYTDLLLAILPFEKGFFQKFGLDCRYVGHPL-LDEIKLYK 170 (373)
T ss_pred CHHHHHHHHHHH-CCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEECCCCH-HHHHCCCC
T ss_conf 155999999997-1999878999688422127158999999998731289887899986099715759811-65401377
Q ss_pred CHHHHHHHCCCCCCCCEEEE-EE-EECHHH-HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 32687887288988727999-51-226445-1236665456530047740588631333210001466776443112332
Q gi|255764474|r 152 NKQEARRHLKISEDAKLIGC-FG-RIRKLK-GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKK 228 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~~-~G-~~~~~K-g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~i~~~~l~~ 228 (352)
T Consensus 171 ~~~~~~~~~~~~-~~~~i~lLPGSR~~EI~~~lPi~l~aa~~l~~~~~~~~~~ip~~~~~~----~~~~~~~~~~~~~~~ 245 (373)
T pfam02684 171 KRASAKELLIDH-DEPILALLPGSRKGEIRRLLPPIQVAAQQLSSQFPNLKLLVPLVNKKY----EEQIEDTLALENCDV 245 (373)
T ss_pred CHHHHHHHCCCC-CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH----HHHHHHHHHHCCCCC
T ss_conf 658999746898-775577678886999999999999999999976899189996588789----999999998649998
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCHHCCC----------------CCCCE
Q ss_conf 21222222331000000000001233322222210000010011102-78841010023----------------48842
Q gi|255764474|r 229 RILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVAS-NTGVFSELLDP----------------ENAKA 291 (352)
Q Consensus 229 ~V~~~g~~~~~~~~~~~adi~i~pS~~Eg~gl~~lEAma~G~PvI~s-~~~~~~e~i~~----------------~~g~~ 291 (352)
T Consensus 246 ~i~~--~~~~~~~~~~~sd~al~~S-----GTaTLE~al~~~P~vV~Yk~~~lty~i~k~lvkv~~isL~Nii~~k~ivP 318 (373)
T pfam02684 246 SLLE--ISGERYEAMFAADAALAKS-----GTATLEAALAGTPMVVAYRVKPLTFFLAKRLVKIDYISLPNIILNREIVP 318 (373)
T ss_pred CEEE--CCCCHHHHHHHCCEEEECC-----CHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEHHHHHCCCCCCH
T ss_conf 7898--0572499998486501216-----76999999819998999957789999999998389544348866998673
Q ss_pred EEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 49965999899999999998698999999999999999
Q gi|255764474|r 292 GVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAV 329 (352)
Q Consensus 292 G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 329 (352)
T Consensus 319 EllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~ 356 (373)
T pfam02684 319 EFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQ 356 (373)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 56475178999999999996799999999999999999