RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus str. psy62] (352 letters) >gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.. Length = 374 Score = 184 bits (468), Expect = 4e-47 Identities = 97/368 (26%), Positives = 149/368 (40%), Gaps = 50/368 (13%) Query: 19 GVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSI---GISSLLTCWKKPIGQNSRIWHAR 75 G V L G + V GI + + + + Sbjct: 15 GAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLA 74 Query: 76 RNNEMLLGVMMRDVL----------------RMPLKLVFT-------------SPSQRNH 106 LL DV+ + + LV T + Sbjct: 75 LRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLA 134 Query: 107 SRWTRYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQEARRH 159 R + R D +I S+ + + TVI +GVDTERFRP + ARR Sbjct: 135 RALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRP--APRAARRR 192 Query: 160 LKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQR 219 L I ED +I GR+ KG DL ++ + + +P V+VG L+ + L+ Sbjct: 193 LGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLR-----EELEA 247 Query: 220 RIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT 277 GL R+ F+ + Y A ++FV P LYEGFGL LEAMA+G+PVVAS+ Sbjct: 248 LAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 Query: 278 GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKE 337 G E+++ + G++VPP + AL +A+L ++ ++ G RER + FS + Sbjct: 308 GGIPEVVEDG--ETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRV 365 Query: 338 ASDIGKVY 345 A+ +VY Sbjct: 366 AARTEEVY 373 >gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.. Length = 377 Score = 163 bits (415), Expect = 6e-41 Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 19/260 (7%) Query: 97 VFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIER------PSTVIMHGVDTERFRPT 150 V P +R R + R D VI S+ A ++ TVI +GVDTERF P Sbjct: 129 VNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSP- 187 Query: 151 SNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKH 210 + R L + ED K+I GR+ KG D ++ + +L P V+VG L+ Sbjct: 188 -ADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR- 245 Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMAS 268 + L+ GL+ R+ F+ E +Y A ++FV P L EGFGL LEAMA Sbjct: 246 ----EALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMAC 301 Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328 G+PVVA++ G E++ + G++VPP + AL +A+L + G R R Sbjct: 302 GLPVVATDVGGIPEIITDG--ENGLLVPPGDPEALAEAILRLLADPW--LRLGRAARRRV 357 Query: 329 VKHFSIVKEASDIGKVYDRL 348 + FS A + ++Y + Sbjct: 358 AERFSWENVAERLLELYREV 377 >gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.. Length = 365 Score = 150 bits (382), Expect = 4e-37 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 17/244 (6%) Query: 111 RYLISRMDEVITTSQKSARFIE------RPSTVIMHGVDTERFRPTSNKQEA-RRHLKIS 163 R L S + ++ S +A + + + VI +GVDTERF P + + R L + Sbjct: 131 RLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLP 190 Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY- 222 ED LIG R+ K + +L P ++VG + NL+ Sbjct: 191 EDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR-----ANLELLALK 245 Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282 GL+ +++ + E+S + AL++FV L EGF LEAMA G+PVVA++ G +E Sbjct: 246 ELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAE 305 Query: 283 LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIG 342 L+ G +VPP + AL +A+ + + G RER ++FSI Sbjct: 306 LVGD----TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE 361 Query: 343 KVYD 346 ++Y Sbjct: 362 ELYR 365 >gnl|CDD|144209 pfam00534, Glycos_transf_1, Glycosyl transferases group 1. Mutations in this domain of subunit A of phosphatidylinositol N-acetylglucosaminyltransferase lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. Length = 172 Score = 133 bits (336), Expect = 8e-32 Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 10/179 (5%) Query: 152 NKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPH-HPGWTAVVVGKTTLKH 210 +++E R+ L I ED +I GR+ KG DL ++ + HP V+VG + Sbjct: 1 DREEERKKLGIPEDKPIILFVGRLVPEKGLDLLLEAFALLKEQLHPNLKLVIVGDGEEE- 59 Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGLTPLEAMAS 268 K L++ GL+ ++F+ + + YR ++FV P YEGFGL LEAMA+ Sbjct: 60 ----KKLKKLALKLGLEDNVIFVGFVPREDLIELYRIADLFVLPSRYEGFGLVLLEAMAA 115 Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRER 327 G+PV+AS+ G +E++ ++ + G++V P + AL +A+ + +++ G R+R Sbjct: 116 GVPVIASDVGGPAEIV--KDGETGLLVDPGDAEALAEAIEKLLKDEELRERLGENARKR 172 >gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.. Length = 359 Score = 126 bits (318), Expect = 1e-29 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 31/249 (12%) Query: 111 RYLISRMDEVITTSQ------KSARFIERPSTVIMH--GVDTERFRPTSNKQEARRHLKI 162 R + D+VI ++ I++ TV++ GVD +RF P+ I Sbjct: 133 RLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP--------I 184 Query: 163 SEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY 222 ED + R+ K KG D ++ + P ++VG ++ +++ Sbjct: 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKL-- 242 Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282 GL+ R+ F+ + + + A ++FV P EG LEAMA G PV+A++ E Sbjct: 243 --GLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE 300 Query: 283 LLDP-ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDI 341 + N G +VPP + AL A+ + ++ + G R+RA + F D Sbjct: 301 AVIDGVN---GFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEF-------DE 350 Query: 342 GKVYDRLLR 350 V +LL Sbjct: 351 EIVVKKLLE 359 >gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.. Length = 398 Score = 124 bits (314), Expect = 3e-29 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 12/231 (5%) Query: 113 LISRMDEVITTS------QKSARFIERPSTVIMH-GVDTERFRPTSNKQEARRHLKISED 165 L+ D VI ++ S ++ GVD ERF P + R L D Sbjct: 160 LLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPD 219 Query: 166 AKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRI-YAN 224 I GR+ KG D + + V+VG + R + Sbjct: 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELAREL 279 Query: 225 GLKKRILF--IDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282 G+ R+ F + + YRA ++FV P LYE FGLT LEAMA G+PVVA+ G + Sbjct: 280 GVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD 339 Query: 283 LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333 ++ + G++V PR+ AL A+ + + G RA ++ Sbjct: 340 IV--VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYT 388 >gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.. Length = 375 Score = 123 bits (312), Expect = 5e-29 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 15/231 (6%) Query: 120 VITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGR 174 V TS++ A I R P VI +GVD F ++ RR I D ++I GR Sbjct: 153 VHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGR-RRKFPILPDKRIILFLGR 211 Query: 175 IRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID 234 + KG DL ++ + P W V+ G + L++ A GL+ R+ F Sbjct: 212 LHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAE---LKQIAAALGLEDRVTFTG 268 Query: 235 EQSSIEDW--YRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAG 292 + ++FV P E FG+ EA+A G PVV ++ + EL++ G Sbjct: 269 MLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIE---YGCG 325 Query: 293 VIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGK 343 +V ++ AL A+ + + + G GR + FS A + + Sbjct: 326 WVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375 >gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.. Length = 365 Score = 121 bits (307), Expect = 2e-28 Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 36/261 (13%) Query: 94 LKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIMHGVDTERFRPTSNK 153 L L +PS RW D + S+ F P VI +G+DT FRP +K Sbjct: 135 LNLTIVAPS-----RWLA------DCA----RSSSLFKGIPIEVIPNGIDTTIFRP-RDK 178 Query: 154 QEARRHLKISEDAKLIGCFGRI---RKLKGTDLFVDCMINILPH--HPGWTAVVVGKTTL 208 +EAR+ L + D K+I FG + KG D ++ + L VV G + Sbjct: 179 REARKRLGLPADKKII-LFGAVGGTDPRKGFDELIEAL-KRLAERWKDDIELVVFGASD- 235 Query: 209 KHYLFKKNLQRRIYANGLKKRIL-FIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMA 267 L +++ S+ Y A ++FV P L E F T +EA+A Sbjct: 236 ---------PEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALA 286 Query: 268 SGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRER 327 G PVVA + G +++D G + P + L + + + + + G RE Sbjct: 287 CGTPVVAFDVGGIPDIVDHG--VTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAAREL 344 Query: 328 AVKHFSIVKEASDIGKVYDRL 348 A F +A +Y+ L Sbjct: 345 AENEFDSRVQAKRYLSLYEEL 365 >gnl|CDD|30787 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]. Length = 381 Score = 119 bits (298), Expect = 1e-27 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 38/372 (10%) Query: 5 NIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKP 64 + +A ++ G V ++ + L + LP I + + L Sbjct: 20 YVLELAKALRLLGRGHEVLVIAPEKLEGLGIEVLRLPSVSLPLLIVRLRPALLRLLLLLK 79 Query: 65 IGQNSRIWHARRNNEMLLGVMMR-------------------DVLRMPLKLVFTSPSQRN 105 I HA G++ +L +P L+ + Sbjct: 80 RLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLL 139 Query: 106 HSRWTRYLISRMDEVITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHL 160 R + L D VI S +E VI +G+DTE+F P AR L Sbjct: 140 LKRLKKALRLLADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAP------ARIGL 193 Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRR 220 ++ GR+ KG DL ++ + P V+VG + ++ L++ Sbjct: 194 LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER----REELEKL 249 Query: 221 IYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278 GL+ + F+ E + + ++FV P L EGFGL LEAMA+G PV+AS+ G Sbjct: 250 AKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309 Query: 279 VFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338 E++ E+ + G++VPP ++ L A+ + ++ + G RER + FS + A Sbjct: 310 GIPEVV--EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIA 367 Query: 339 SDIGKVYDRLLR 350 + ++Y+ LL Sbjct: 368 EQLLELYEELLA 379 >gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.. Length = 360 Score = 107 bits (270), Expect = 4e-24 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 10/201 (4%) Query: 135 STVIMHGVDTERFRP-TSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILP 193 S V+ +G+DT+RFR + + + R L + D +I GR+ + K + +L Sbjct: 156 SFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS 215 Query: 194 HHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPP 253 + ++ G L+ L+R I A GL R+ + + I +Y A ++FV Sbjct: 216 DYLDIKLLIAGDGPLR-----ATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSS 270 Query: 254 LYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNS 313 +EGFGL EAMA +PVVA++ G E++ +G+IVP + AL + + Sbjct: 271 AWEGFGLVVAEAMACELPVVATDAGGVREVVGD----SGLIVPISDPEALANKIDEILKM 326 Query: 314 KKIMSDTGNRGRERAVKHFSI 334 D RER VK FSI Sbjct: 327 SGEERDIIGARRERIVKKFSI 347 >gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.. Length = 365 Score = 105 bits (265), Expect = 1e-23 Identities = 69/245 (28%), Positives = 95/245 (38%), Gaps = 20/245 (8%) Query: 98 FTSPSQRNHSRWTRYLISRMDEVITTSQKSAR-------FIERPSTVIMHGVDTERFRPT 150 F+ +R R R + R D +IT S+ + R VI GVD P Sbjct: 122 FSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPP 181 Query: 151 SNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKH 210 + + R + G I K + ++ + P V+VGK + Sbjct: 182 AEAEVLRALYLL--PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLN 239 Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMAS 268 L R+ GL R+ F+ S E YR FV P LYEGFGL LEAMA Sbjct: 240 E----ELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMAC 295 Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328 G PV+ASN E+ A + P + AL A+ + + + RG RA Sbjct: 296 GTPVIASNISSLPEVAGD----AALYFDPLDPEALAAAIERLLEDPALREELRERGLARA 351 Query: 329 VKHFS 333 K FS Sbjct: 352 -KRFS 355 >gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.. Length = 348 Score = 103 bits (259), Expect = 8e-23 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%) Query: 163 SEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY 222 +K I GR+ KG DL ++ I HP W +VG + + L+ I Sbjct: 175 DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER-----EALEALIK 229 Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASN--TGVF 280 GL+ R++ + +IE++Y +IFV +EGF + LEAMA G+PV++ + TG Sbjct: 230 ELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP- 288 Query: 281 SELLDP-ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334 SE+++ N G++VP ++ AL +A+L M +++ G RE A + FSI Sbjct: 289 SEIIEDGVN---GLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-ERFSI 339 >gnl|CDD|99983 cd03812, GT1_CapH_like, This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).. Length = 358 Score = 101 bits (255), Expect = 2e-22 Identities = 46/173 (26%), Positives = 96/173 (55%), Gaps = 11/173 (6%) Query: 111 RYLISRM-DEVITTSQKSARFI-----ERPSTVIMHGVDTERFRPTSNKQEARRHLKISE 164 R LI+R+ + + S+++ +++ + VI +G+D E+F ++ RR L I E Sbjct: 131 RKLINRLATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILE 190 Query: 165 DAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYAN 224 D +IG GR + K + ++ +L +P ++VG L+ + +++++ Sbjct: 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELE-----EEIKKKVKEL 245 Query: 225 GLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT 277 GL+ +++F+ ++ + + +A+++F+ P LYEG L +EA ASG+P + S+T Sbjct: 246 GLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT 298 >gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.. Length = 374 Score = 100 bits (252), Expect = 5e-22 Identities = 80/298 (26%), Positives = 124/298 (41%), Gaps = 44/298 (14%) Query: 79 EMLLGVMMRDVLR-MPLKLVFT---------------SPSQRNHSRW--TRYLISRMDEV 120 LG++ V R + + +V T R R +R +R D V Sbjct: 93 PFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAV 152 Query: 121 ITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRI 175 I S+K A + P VI G+D +RF P E RR L I ED ++ GR+ Sbjct: 153 IAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDE-RRKLGIPEDEPVLLYVGRL 211 Query: 176 RKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDE 235 K K D + +L P V+VG + + L+ GL R++F Sbjct: 212 AKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPER-----EELEELARELGLADRVIFTGF 266 Query: 236 QSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELL-DPENAKAG 292 E D+Y+A ++FV E GL LEAMA+G+PVVA + +L+ D EN G Sbjct: 267 VPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGEN---G 323 Query: 293 VIVPPRNLHALEKAVLYFMN--SKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRL 348 + PP + E + + ++ +S E + + FS K + K+Y+ + Sbjct: 324 FLFPPGDEALAEALLRLLQDPELRRRLSKNA----EESAEKFSFAK---KVEKLYEEV 374 >gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.. Length = 364 Score = 99.6 bits (249), Expect = 1e-21 Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 23/239 (9%) Query: 100 SPSQRNHSRWTRYLISRMDEVITTS-----QKSARFIERPSTVIMHGVDTERFRPTSNKQ 154 P + R+ +R D V+ S + AR R + GVDTE F P + Sbjct: 128 GPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVR-LWPRGVDTELFHP-RRRD 185 Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFK 214 EA R D ++ GR+ K + +D + L P V+VG + Sbjct: 186 EALRARLGPPDRPVLLYVGRLAPEKNLEALLDADLP-LRRRPPVRLVIVGDGPAR----- 239 Query: 215 KNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPV 272 L+ R Y N + F+ E Y + ++FV P E FGL LEAMASG+PV Sbjct: 240 ARLEAR-YPN-----VHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPV 293 Query: 273 VASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKH 331 VA + G ++++ + G++V P + A A+ + ++ R R A + Sbjct: 294 VAPDAGGPADIVTDG--ENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERR 350 >gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.. Length = 353 Score = 99.3 bits (248), Expect = 1e-21 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 22/244 (9%) Query: 102 SQRNHSRWTRYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQ 154 + R L R D+++ S+ + + VI + +D E R + + Sbjct: 121 RKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEP 180 Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFK 214 L I D +I GR+ KG D + + P V++G L+ Sbjct: 181 ---LELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----- 232 Query: 215 KNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVA 274 + L+ GL R+ F+ QS+ + +A ++FV YEGF LEAMA G PVVA Sbjct: 233 EELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA 292 Query: 275 SN-TGVFSELLDPENAKAGVIVPPRN---LHALEKAVLYFMNSKKIMSDTGNRGRERAVK 330 ++ G E+L E+ + G++VP + L A A+L + ++ RER + Sbjct: 293 TDCPGP-REIL--EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAR 349 Query: 331 HFSI 334 +S Sbjct: 350 EYSK 353 >gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.. Length = 355 Score = 97.3 bits (243), Expect = 6e-21 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 9/205 (4%) Query: 136 TVIMHGVDTERFRPTSNKQE----ARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINI 191 VI GVD +RF P + E R + + +I GR+ + KG ++F++ + + Sbjct: 151 RVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARL 210 Query: 192 LPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVA 251 P ++VG + L I GL+ R+ F+ S + Y +I V+ Sbjct: 211 KKDDPDVHLLIVGDA-QGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVS 269 Query: 252 PPLY-EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYF 310 E FG T +EA A G PV+AS+ G E + P G++VPP + AL +A+ Sbjct: 270 ASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVRPGE--TGLLVPPGDAEALAQALDQI 327 Query: 311 MNSKKIMSDT-GNRGRERAVKHFSI 334 ++ + R FS Sbjct: 328 LSLLPEGRAKMFAKARMCVETLFSY 352 >gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.. Length = 475 Score = 89.6 bits (223), Expect = 1e-18 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 28/244 (11%) Query: 108 RWTR--YLISRM-----DEVITTSQKSARF-IE---RPST--VIMHGVDTERFRPTSNKQ 154 W R + R+ D + T + + IE P VI +G+D ERF P Sbjct: 229 LWIRFFESLGRLAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPAR--- 285 Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTT-LKHYLF 213 R K ++G GR+ +K F+ + P V+G T Y Sbjct: 286 -RARPEKE---PPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYA- 340 Query: 214 KKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273 + + + + GL+ + F Q+ ++++ L++ V + EG L LEAMA+GIPVV Sbjct: 341 -EECRELVESLGLEDNVKFTGFQN-VKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVV 398 Query: 274 ASNTGVFSELL---DPEN-AKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAV 329 A++ G EL+ D E AG +VPP + AL +A+L + ++ G GR+R Sbjct: 399 ATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVE 458 Query: 330 KHFS 333 ++++ Sbjct: 459 RYYT 462 >gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.. Length = 355 Score = 85.3 bits (212), Expect = 2e-17 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 30/243 (12%) Query: 111 RYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQEARRHLKIS 163 ++R D V+ S+ + + + R V+ GVD ERF P L+I Sbjct: 125 DEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPP-PGEPLRI- 182 Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYA 223 GR+ + KG D ++ + + + +VG L+ L+ I Sbjct: 183 ------LSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR-----DELEALIAE 231 Query: 224 NGLKKRILFIDEQSSIE--DWYRALNIFVAPPL------YEGFGLTPLEAMASGIPVVAS 275 GL+ R+ + +S E + RA ++FV P + EG + +EAMA G+PV+++ Sbjct: 232 LGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVIST 291 Query: 276 NTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIV 335 + EL++ + G++VPP + AL A+ ++ ++ + G GR R + F I Sbjct: 292 DVSGIPELVEDG--ETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 Query: 336 KEA 338 K+A Sbjct: 350 KQA 352 >gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.. Length = 371 Score = 83.1 bits (206), Expect = 1e-16 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 25/250 (10%) Query: 110 TRYLISRMDEVITTSQKSAR-----F-IERPSTVIMHGVDTERFRPTSNKQEARRHLKIS 163 TR+ I + D V S+ + F I + VI + VD +RFRP ++ RR Sbjct: 136 TRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLG-AP 194 Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLF-----KKNLQ 218 E K++ R +K D D I I A V + + L + + Sbjct: 195 EGEKVLIHISNFRPVKRID---DV-IRIF-------AKVRKEVPARLLLVGDGPERSPAE 243 Query: 219 RRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278 R GL+ +LF+ +Q +E+ ++F+ P E FGL LEAMA G+PVVASN G Sbjct: 244 RLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG 303 Query: 279 VFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338 E++ + G +V ++ A+ + L + ++ + R RA + F + Sbjct: 304 GIPEVVKHG--ETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIV 361 Query: 339 SDIGKVYDRL 348 +Y RL Sbjct: 362 PQYEALYRRL 371 >gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.. Length = 357 Score = 82.2 bits (204), Expect = 2e-16 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 22/235 (9%) Query: 110 TRYLISRMDEVITTSQKSARF------IERPSTVIMHGVDTERFRPTSNKQEARRHLKIS 163 R + R D ++ TS A VI G+D R+ + + Sbjct: 131 QRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPR--PDALEEAIWRRA 188 Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYA 223 GR+ KG +D ++ P V+VG+ L+ L + A Sbjct: 189 AGRPFFLFVGRLVYYKG----LDVLLEAAAALPDAPLVIVGEGPLEAEL-----EALAAA 239 Query: 224 NGLKKRILFIDEQSSIEDW--YRALNIFVAP-PL-YEGFGLTPLEAMASGIPVVASNTGV 279 GL R+ F+ E A ++FV P E FG+ LEAMA G PV+++ G Sbjct: 240 LGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT 299 Query: 280 FSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334 ++ + G++VPP + AL +A+ + ++ G RERA + F+ Sbjct: 300 GGSYVN-LHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTA 353 >gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.. Length = 394 Score = 82.3 bits (204), Expect = 2e-16 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 23/240 (9%) Query: 107 SRWTRYLISRMDEVITTSQKSARFIERPS------TVIMHGVDTERFRPTSNKQEARRHL 160 + R + R D ++ S ++ R +VI +GVD E F+P E+ R Sbjct: 156 RKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKP-PPADESLRKE 214 Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRR 220 +D ++ G I + +G D ++ +L P ++VG K+ L+ Sbjct: 215 LGLDDKFVVLYAGNIGRAQGLDTLLEAA-ALLKDRPDIRFLIVGDGP-----EKEELKEL 268 Query: 221 IYANGLKKRILFIDEQS--SIEDWYRALNIFVAP--PLYEGFGLTP---LEAMASGIPVV 273 A GL + F+ + + A ++ + P P G++P E MA+G PV+ Sbjct: 269 AKALGLD-NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVL 327 Query: 274 ASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333 AS G +EL+ E A AG++VPP + AL A+L ++ + ++ G GR + FS Sbjct: 328 ASVDGESAELV--EEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385 >gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.. Length = 229 Score = 81.5 bits (201), Expect = 3e-16 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%) Query: 128 ARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDC 187 AR + P + +HGV+ + L +S GR+ KG D ++ Sbjct: 71 ARLLGIPLVLTVHGVNRSLL-----EGVPLSLLALSIGLADKVFVGRLAPEKGLDDLIEA 125 Query: 188 MINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIED---WYR 244 + P V+ G + + L+ + A L R++F+ E Sbjct: 126 FALLKERGPDLKLVIAGDGPER-----EYLEELLAALLLLDRVIFLGGLDPEELLALLLA 180 Query: 245 ALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIV 295 A ++FV P L EGFGL LEAMA G+PV+A++ G E++ E+ G++V Sbjct: 181 AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIV--EDGLTGLLV 229 >gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.. Length = 366 Score = 78.1 bits (193), Expect = 4e-15 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 29/221 (13%) Query: 106 HSRWTRYLISRMDEVITTSQKSAR-FIERPS----TVIMHGVDTERFRPTSNKQEARRHL 160 R L+ R D VI S + R + R VI HGV P + E+ + L Sbjct: 124 DRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGV----PDPPAEPPESLKAL 179 Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKT---TLKHYLFKKNL 217 + ++ FG +R KG +L ++ + ++ HP +V G+T ++ L Sbjct: 180 GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYAL 239 Query: 218 QRRIYANGLKKRILFIDEQSSIEDWYRAL---NIFVAPPLYEGFGLT-----PLEAMASG 269 R GL R++FI+ E+ ++ V P Y T A+ G Sbjct: 240 AER---LGLADRVIFINRYLPDEELPELFSAADVVVLP--YRSADQTQSGVLAY-AIGFG 293 Query: 270 IPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYF 310 PV+++ G E+LD G++VPP + AL +A+ Sbjct: 294 KPVISTPVGHAEEVLDGGT---GLLVPPGDPAALAEAIRRL 331 >gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.. Length = 367 Score = 77.7 bits (192), Expect = 4e-15 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 25/211 (11%) Query: 136 TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195 V GVDT +F P + + R L GR + KG L ++ + Sbjct: 168 HVHPIGVDTAKFTPATPARRPPRIL----------FVGRFVEKKGPLLLLEAFARLARRV 217 Query: 196 PGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQS--SIEDWYRALNIFVAPP 253 P V++G L L+ A GL R+ F+ Q + + R IF+ P Sbjct: 218 PEVRLVIIGDGPLL-----AALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272 Query: 254 LY------EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAV 307 + EG + LEA ASG+PVVA+ G E + E+ + G++VP ++ AL A+ Sbjct: 273 VTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAV--EDGETGLLVPEGDVAALAAAL 330 Query: 308 LYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338 + + + G GR R + F + ++ Sbjct: 331 GRLLADPDLRARMGAAGRRRVEERFDLRRQT 361 >gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.. Length = 351 Score = 69.9 bits (172), Expect = 9e-13 Identities = 66/238 (27%), Positives = 96/238 (40%), Gaps = 48/238 (20%) Query: 106 HSRWTRYLISRMDEVITTSQKSARFIE----RPSTVIMHGVDTERFRPTSNKQEARRHLK 161 W R +R+D I S+ AR I+ R +TVI VDT+RF P K Sbjct: 143 LRIWDRRSAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAEEK-------- 194 Query: 162 ISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRI 221 ED L GR+ K DL ++ + G VV+G + L+ Sbjct: 195 --EDYYL--SVGRLVPYKRIDLAIEAFNKL-----GKRLVVIGD----GPELDR-LRA-- 238 Query: 222 YANGLKKRILFIDEQSS--IEDWY---RALNIFVAPPLYEGFGLTPLEAMASGIPVVASN 276 + F+ S + D Y RA +F A E FG+ P+EAMASG PV+A Sbjct: 239 ---KAGPNVTFLGRVSDEELRDLYARARAF-LFPA---EEDFGIVPVEAMASGTPVIAYG 291 Query: 277 TGVFSE-LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333 G E ++D G++ + + +L AV F ++ R A + FS Sbjct: 292 KGGALETVIDGVT---GILFEEQTVESLAAAVERFEKNEDFDPQA---IRAHA-ERFS 342 >gnl|CDD|36327 KOG1111, KOG1111, KOG1111, N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones, Lipid transport and metabolism]. Length = 426 Score = 66.9 bits (163), Expect = 7e-12 Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 38/279 (13%) Query: 92 MPLKLVFTSPS----QRNHSRWT----RYLISRMDEVITTSQKS--------ARFIERPS 135 M LK VFT S S T ++ +D +I S S A + S Sbjct: 113 MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVS 172 Query: 136 TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195 VI + V T F P + K S D I R+ KG DL ++ + ++ H Sbjct: 173 -VIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKH 224 Query: 196 PGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID--EQSSIEDWYRALNIFVAPP 253 P +++G K ++ L++ L+ R++ + + D +IF+ Sbjct: 225 PEVRFIIIGDGP-KRIDLEEMLEK----LFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTS 279 Query: 254 LYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNS 313 L E F + +EA + G+PVV++ G E+L + G P + A+EKA+ Sbjct: 280 LTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAI------ 333 Query: 314 KKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352 + +R K +S A KVYDR T+ Sbjct: 334 -TKLRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371 >gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.. Length = 335 Score = 66.5 bits (163), Expect = 1e-11 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 42/227 (18%) Query: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCF-GRIRKLK 179 I+ +Q+ + +G+D + + + +L F GRI K Sbjct: 138 ISDAQRRPWPPLPWVATVHNGIDLDDYPF---RGPKGDYL----------LFLGRISPEK 184 Query: 180 GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSI 239 G L + G + G + Y F + + + I ++ E Sbjct: 185 GPHLAIR-----AARRAGIPLKLAGPVSDPDY-FYREIAPELLDG---PDIEYLGEVGG- 234 Query: 240 EDWYRALN-----IFVAPPLY-EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGV 293 + L +F P L+ E FGL +EAMA G PV+A G E+++ G Sbjct: 235 AEKAELLGNARALLF--PILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDG--VTGF 290 Query: 294 IVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340 +V ++ L AV + R RA + FS + D Sbjct: 291 LVD--SVEELAAAV------ARADRLDRAACRRRAERRFSAARMVDD 329 >gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).. Length = 359 Score = 66.1 bits (162), Expect = 2e-11 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 23/182 (12%) Query: 130 FIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMI 189 +VI +G+D +R + + L+ G G++ KG DL ++ Sbjct: 163 LFAEKISVIRNGIDLDRAKRPR-RAPPGGRLRF-------GFIGQLTPHKGVDLLLEAFK 214 Query: 190 NILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID--EQSSIEDWYRALN 247 LP V+VG L+ Y R+ F+ Q I+D+Y ++ Sbjct: 215 R-LPR-GDIELVIVGN--------GLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEID 264 Query: 248 IFVAPPL-YEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKA 306 + V P + E F L EA+A+G+PV+AS+ G +EL+ G++ PP + L A Sbjct: 265 VLVVPSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDG--VNGLLFPPGDAEDLAAA 322 Query: 307 VL 308 + Sbjct: 323 LE 324 >gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.. Length = 372 Score = 64.6 bits (158), Expect = 4e-11 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 5/104 (4%) Query: 214 KKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273 ++ L+ I GL+ + +++ Y+ + + EGFGL+ +EA++ G+PV+ Sbjct: 247 EEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVI 306 Query: 274 ASNT--GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKK 315 + + G SE++ E+ + G +VP ++ AL +A++ +N K Sbjct: 307 SYDVNYGP-SEII--EDGENGYLVPKGDIEALAEAIIELLNDPK 347 >gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.. Length = 372 Score = 53.4 bits (129), Expect = 9e-08 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%) Query: 256 EGFGLTPLEAMASGIPVVASNT-GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSK 314 EGFGLT EA+ G PV+A G+ ++ D E G +V +LY + Sbjct: 284 EGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGET---GFLVDTVE--EAAVRILYLLRDP 338 Query: 315 KIMSDTGNRGRERAVKHFSIVKEASD 340 ++ G RE ++F I + D Sbjct: 339 ELRRKMGANAREHVRENFLITRHLKD 364 >gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.. Length = 392 Score = 51.8 bits (125), Expect = 3e-07 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 253 PLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMN 312 P E FG+ PLEAM +G PV+A N+G E + + + G + P +A+L N Sbjct: 307 PSNEHFGIVPLEAMYAGKPVIACNSGGPLETVV--DGETGFLCEP-TPEEFAEAMLKLAN 363 Query: 313 SKKIMSDTGNRGRERAVKHFS 333 + G GR+R + FS Sbjct: 364 DPDLADRMGAAGRKRVKEKFS 384 >gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.. Length = 476 Score = 51.0 bits (123), Expect = 5e-07 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 67/251 (26%) Query: 118 DEVITTSQKSARFIERPS----------------TVIMHGVDTERFRP------------ 149 D V T S AR I P + I++G+D + + P Sbjct: 212 DAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSA 271 Query: 150 --TSNKQEARRHL------KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAV 201 K E + L + DA L G GR+ + KG DL ++ + +L V Sbjct: 272 DDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQL--V 329 Query: 202 VVGK--TTLKHYLFKKNLQRRIYANGLKKRILFI---DEQSS--IEDWYRALNIFVAPPL 254 ++G + L + A R+ + DE + I Y + F+ P Sbjct: 330 ILGSGDPEYEEALRE-------LAARYPGRVAVLIGYDEALAHLI---YAGADFFLMPSR 379 Query: 255 YEGFGLTPLEAMASGIPVVASNTG-----VFSELLDPENAKA-GVIVPPRN----LHALE 304 +E GLT + AM G + TG V + + + G + N L AL Sbjct: 380 FEPCGLTQMYAMRYGTVPIVRATGGLADTVID--YNEDTGEGTGFVFEGYNADALLAALR 437 Query: 305 KAVLYFMNSKK 315 +A+ + + + Sbjct: 438 RALALYRDPEA 448 >gnl|CDD|36071 KOG0853, KOG0853, KOG0853, Glycosyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 495 Score = 50.3 bits (120), Expect = 7e-07 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 215 KNLQRRIYANGLKKRILFIDEQSSIEDWYRALN----IFVAPPLYEGFGLTPLEAMASGI 270 K L I L + ++ ++ YR + P E FG+ P+EAMA G+ Sbjct: 332 KELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPA-NEHFGIVPIEAMACGL 390 Query: 271 PVVASNTGVFSELLDPENAKAGVIVPP--RNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328 PVVA+N G +E++ + G+++ P + L A+L ++ + G G +R Sbjct: 391 PVVATNNGGPAEIV--VHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRV 448 Query: 329 VKHFS 333 + FS Sbjct: 449 KEMFS 453 >gnl|CDD|30645 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism]. Length = 487 Score = 49.1 bits (117), Expect = 2e-06 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 25/182 (13%) Query: 152 NKQEARRHLKISEDAK--LIGCFGRIRKLKGTDLFVDCMINILPH--HPGWTAVVVGK-- 205 NK + L + D L G R+ KG DL ++ + GW V++G Sbjct: 278 NKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDL----LLEAIDELLEQGWQLVLLGTGD 333 Query: 206 TTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEA 265 L+ L + L R G ++ DE + Y ++ + P +E GLT L A Sbjct: 334 PELEEAL--RALASRH--PGRVLVVIGYDEPLAHL-IYAGADVILMPSRFEPCGLTQLYA 388 Query: 266 MASGIPVVASNTG-----VFSELLDPENAKA-GVIVPPRN----LHALEKAVLYFMNSKK 315 M G + TG V G + N +AL +A++ + Sbjct: 389 MRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL 448 Query: 316 IM 317 + Sbjct: 449 LW 450 >gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.. Length = 398 Score = 44.5 bits (106), Expect = 4e-05 Identities = 73/284 (25%), Positives = 110/284 (38%), Gaps = 48/284 (16%) Query: 92 MPLKLVFTSPSQRNHS-------------RWTRYLISRMDEVITTSQKSA-----RFIER 133 M LK VFT +HS + R+ ++ +D VI S S R Sbjct: 112 MGLKTVFT-----DHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLD 166 Query: 134 PS--TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINI 191 P +VI + VD+ F P +K+ D I R+ KG DL V + I Sbjct: 167 PERVSVIPNAVDSSDFTPDPSKR--------DNDKITIVVISRLVYRKGIDLLVGIIPEI 218 Query: 192 LPHHPGWTAVVVG----KTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALN 247 HP ++ G + L+ K NLQ R+ +L + D + Sbjct: 219 CKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRV-------ELLGAVPHERVRDVLVQGH 271 Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAV 307 IF+ L E F + +EA + G+ VV++ G E+L P+ + LE+A+ Sbjct: 272 IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAI 331 Query: 308 LYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRT 351 K NR + K +S A KVYDR+L+T Sbjct: 332 SILRTGKHDPWSFHNRVK----KMYSWEDVAKRTEKVYDRILQT 371 >gnl|CDD|30729 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]. Length = 486 Score = 41.8 bits (98), Expect = 3e-04 Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 40/228 (17%) Query: 141 GVDTERFRPTSNKQEARRHL-----KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195 G+D E F + + ++ + KLI R+ KG + +L + Sbjct: 252 GIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEY 311 Query: 196 PGW----TAVVVGKTTLKHYLFKKNLQRRI----------YANGLKKRILFIDEQSSIED 241 P W + + + + + L+ +I + + + ++ + Sbjct: 312 PEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNE 371 Query: 242 W---YRALNIFVAPPLYEGFGLTPLEAMA-----SGIPVVASNTGVFSELLDPENAKAGV 293 YRA ++ + PL +G L E +A G+ +++ G SEL D + Sbjct: 372 LLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD------AL 425 Query: 294 IVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDI 341 IV P + + A+ + MS R+ + D+ Sbjct: 426 IVNPWDTKEVADAIKRALT----MS---LEERKERHEKLLKQVLTHDV 466 >gnl|CDD|99967 cd03793, GT1_Glycogen_synthase_GSY2_like, Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.. Length = 590 Score = 41.2 bits (97), Expect = 5e-04 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296 E++ R ++ V P YE +G TP E GIP + +N G F E + G+ + Sbjct: 469 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIV 528 Query: 297 PRNLHALEKAV 307 R + +++V Sbjct: 529 DRRFKSPDESV 539 >gnl|CDD|31708 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]. Length = 419 Score = 40.2 bits (94), Expect = 8e-04 Identities = 54/264 (20%), Positives = 89/264 (33%), Gaps = 42/264 (15%) Query: 93 PLKLVFTSPSQRNHSRWTRY------LISRMDEVITTSQKSA-RFIE------------- 132 PL LV S R+ +R+ + L +D ++ S++ A RF Sbjct: 148 PLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLK 207 Query: 133 ---RPSTVIMHGVDTERFRPTSNKQEARRHLKIS----EDAKLIGCFGRIRKLKGTDLFV 185 P + + R + + S E+ ++ ++K F Sbjct: 208 FDIEPPPQLAAELAALRRQL---GGHRPVWVAASTHEGEEEIILDAHQALKKQ-----FP 259 Query: 186 DCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRA 245 + ++ ++P HP V K + + +L D + Y Sbjct: 260 NLLLILVPRHPERFKAVENLLKRKG--LSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGI 317 Query: 246 LNI-FVAPPLYEGFGLTPLEAMASGIPVVAS-NTGVFSELL-DPENAKAGVIVPPRNLHA 302 +I FV L G PLE A G PV+ T FS++ A AG+ V +L Sbjct: 318 ADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADL-- 375 Query: 303 LEKAVLYFMNSKKIMSDTGNRGRE 326 L KAV + + G G E Sbjct: 376 LAKAVELLLADEDKREAYGRAGLE 399 >gnl|CDD|99988 cd03818, GT1_ExpC_like, This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).. Length = 396 Score = 38.7 bits (91), Expect = 0.002 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 49/228 (21%) Query: 136 TVIMHGVDTERFRPTSNKQEARRHL----KISEDAKLIGCFGR-IRKLKGTDLFVDCMIN 190 +VI G+DT+R RP + Q AR L ++ ++I R + +G +F+ + Sbjct: 180 SVIHDGIDTDRLRP--DPQ-ARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPR 236 Query: 191 ILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKK----RILFIDEQSSIEDWYRAL 246 +L P V+VG Y + +DE D R Sbjct: 237 LLRARPDARVVIVGGD------------GVSYGAPPPDGESWKQHMLDELGGRLDLSR-- 282 Query: 247 NIFVAPPL-YEGF-----------GLT-P-------LEAMASGIPVVASNTGVFSELLDP 286 + + Y+ + LT P LEAMA G VV S+T E++ Sbjct: 283 -VHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVI-- 339 Query: 287 ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334 + + G++V + AL AV+ ++ + R A+++ + Sbjct: 340 TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLL 387 >gnl|CDD|38946 KOG3742, KOG3742, KOG3742, Glycogen synthase [Carbohydrate transport and metabolism]. Length = 692 Score = 38.8 bits (90), Expect = 0.003 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296 E++ R ++ V P YE +G TP E GIP V +N G F E + G+ + Sbjct: 495 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIV 554 Query: 297 PRNLHALEKAV 307 R + +++V Sbjct: 555 DRRFKSPDESV 565 >gnl|CDD|144539 pfam00982, Glyco_transf_20, Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex,. Length = 470 Score = 36.9 bits (86), Expect = 0.008 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 40/252 (15%) Query: 115 SRMDEVITTSQKSARFIERPSTVIMH--GVDTERFRPTSNKQEARRHLK-ISE----DAK 167 SR+ + TTS + R +V G+D R + +K + E K Sbjct: 214 SRLLGLETTSDGGVEYGGRTVSVGAFPIGIDPGRIESGLKSPSVQEKVKELKERFGNKKK 273 Query: 168 LIGCFGRIRKLKGTDLFVDCMINILPHHPGW----TAVVVGKTTLKHYLFKKNLQRRIYA 223 LI R+ +KG + L +P W V + + +NL+ ++ Sbjct: 274 LILGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVPSRGDVEEYQNLRSQVEE 333 Query: 224 -----NGL-----KKRILFIDEQSSIEDW---YRALNIFVAPPLYEGFGLTPLEAMAS-- 268 NG + + ++ Y ++ + L +G L E +A Sbjct: 334 LVGRINGEFGTLDYTPVHHLHRSLDFDELIALYAIADVCLVTSLRDGMNLVAYEYVACQQ 393 Query: 269 ---GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGR 325 G+ +++ G L D ++V P ++ + +A+ + MS+ + R Sbjct: 394 DRKGVLILSEFAGAAQSLND-----GAILVNPWDIEEVAEAINEALT----MSEEERQKR 444 Query: 326 ERAVKHFSIVKE 337 R K F + + Sbjct: 445 HR--KLFKYISK 454 >gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 398 Score = 36.9 bits (85), Expect = 0.009 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 22/70 (31%) Query: 203 VGKTTLKHYLFKKNLQRRIYAN----------------------GLKKRILFIDEQSSIE 240 VGKTTL L K L+ IY N +K +F+DE ++ Sbjct: 48 VGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP 107 Query: 241 DWYRALNIFV 250 DW RAL Sbjct: 108 DWERALKYLY 117 >gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in certain bacteria and Archaea.. Length = 363 Score = 35.7 bits (83), Expect = 0.021 Identities = 51/243 (20%), Positives = 76/243 (31%), Gaps = 64/243 (26%) Query: 118 DEVITTSQKSARFIE----RPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFG 173 D +I S +++ R ST I +G D +S + E + + + G Sbjct: 145 DRLIADSPGIKEYLKEKYGRDSTYIPYGADH---VVSSEEDEILKKYGLEPGRYYL-LVG 200 Query: 174 RIRKLKGTDLFVD--CMINILPHHPGWTAVVVG----KTTLKHYLFKKNLQRRIYANGLK 227 RI D ++ N G V+VG T L +K A Sbjct: 201 RIVPENNIDDLIEAFSKSN-----SGKKLVIVGNADHNTPYGKLLKEK------AAAD-- 247 Query: 228 KRILFIDEQSSIEDW--YRALNIFVAPPLYEGFGLTP--LEAMASGIPVVASNTGVFSEL 283 RI+F+ E R +F + G P LEAMA G PV+AS+ Sbjct: 248 PRIIFVGPIYDQELLELLRYAALFYLHG-HSVGGTNPSLLEAMAYGCPVLASDN------ 300 Query: 284 LDPENAKAGVIVPPRNLHALEKAVLYFMNSKK-------------IMSDTGNRGRERAVK 330 P N L +YF +S RER + Sbjct: 301 -------------PFNREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIRE 347 Query: 331 HFS 333 ++ Sbjct: 348 KYT 350 >gnl|CDD|114419 pfam05693, Glycogen_syn, Glycogen synthase. This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P). Length = 633 Score = 34.7 bits (80), Expect = 0.036 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296 E++ R ++ V P YE +G TP E GIP V +N G F E + G+ + Sbjct: 464 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPKDYGIYIV 523 Query: 297 PRNLHALEKAV 307 R + +++V Sbjct: 524 DRRFKSPDESV 534 >gnl|CDD|99997 cd04946, GT1_AmsK_like, This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.. Length = 407 Score = 34.6 bits (80), Expect = 0.045 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 237 SSIEDWYR--ALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLD 285 S + Y+ +++FV EG ++ +EAM+ GIPV+A+N G E++D Sbjct: 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVD 350 >gnl|CDD|143621 cd07470, CYTH-like_mRNA_RTPase, CYTH-like mRNA triphosphatase (RTPase) component of the mRNA capping apparatus. This subgroup includes fungal and protozoal RTPases. RTPase catalyzes the first step in the mRNA cap formation process, the removal of the gamma-phosphate of triphosphate terminated pre-mRNA. This activity is metal-dependent. The 5'-end of the resulting mRNA diphosphate is subsequently capped with GMP by RNA guanylytransferase, and then further modified by one or more methyltransferases. The mRNA cap-forming activity is an essential step in mRNA processing. The RTPases are not conserved among eukarya. The structure and mechanism of this fungal RTPase domain group is different from that of higher eukaryotes. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. The RTPase domain of the mimivirus RTPase-GTase fusion mRNA capping enzyme also belongs to this subgroup. Length = 243 Score = 29.7 bits (67), Expect = 1.2 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 24/124 (19%) Query: 79 EMLLGVMM--RDVLRMPLK-----LVFTSPSQR--------NHSRWTRYLISRMDEVITT 123 E LG ++ R R+ L ++ R H R +L + V + Sbjct: 25 EAKLGTIIDKRTGERITLPVSTDIILADRARTRFESNVTESQHKRINEFLN---ELVEES 81 Query: 124 SQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDL 183 S+K R H + F N + +++S D K IRK + DL Sbjct: 82 SKK------REKLKYEHSRTRDSFYELPNATGKKTKIRVSYDQKTGRVLACIRKRRLADL 135 Query: 184 FVDC 187 + Sbjct: 136 DIHS 139 >gnl|CDD|36601 KOG1387, KOG1387, KOG1387, Glycosyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 465 Score = 29.5 bits (66), Expect = 1.4 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 256 EGFGLTPLEAMASG-IPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSK 314 E FG++ +E MA+G IP+V ++ G +++ P + + + P + E + + Sbjct: 367 EHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNY 426 Query: 315 KIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLR 350 + R+ + F +K D +LL Sbjct: 427 DERNMMRRNARKSLAR-FGELKFDKDWENPICKLLE 461 >gnl|CDD|107249 cd01536, PBP1_ABC_sugar_binding_like, Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins. Length = 267 Score = 29.2 bits (66), Expect = 1.9 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Query: 248 IFVAPPLYEGFGLTPL--EAMASGIPVVASNTGVFSELLD----PENAKAGVIV 295 I ++P + LTP +A A+GIPVV ++ + +N +AG + Sbjct: 59 IIISPV--DSAALTPALKKANAAGIPVVTVDSDIDGGNRLAYVGTDNYEAGRLA 110 >gnl|CDD|30401 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]. Length = 252 Score = 28.7 bits (64), Expect = 2.3 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%) Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVP-PRNLHALEKA 306 +FV P E + EA GIPVVA L+D GV P N A+ Sbjct: 160 LFVIDPRKEKIAV--KEANKLGIPVVA--------LVDTNCDPDGVDYVIPGNDDAIRSI 209 Query: 307 VLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340 L + +++ GR A+ E + Sbjct: 210 ALIY----WLLARAILEGRGGALDEEEAAIEEDE 239 >gnl|CDD|38732 KOG3523, KOG3523, KOG3523, Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]. Length = 695 Score = 28.8 bits (64), Expect = 2.5 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 31 QRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLLGVMMRDVL 90 ++K VF Y + L K P G NS + R + LL ++ + Sbjct: 515 KKKSEGSFQVFDYAPRSLLQVEKCEPEL---KLPGGANSL---SSRPHLFLL-TLLSNHQ 567 Query: 91 RMPLKLVFTSPSQRNHSRW 109 +L+ ++ SQ + RW Sbjct: 568 GRQTELLLSAESQSDRQRW 586 >gnl|CDD|144190 pfam00501, AMP-binding, AMP-binding enzyme. Length = 412 Score = 28.8 bits (65), Expect = 2.5 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 18/82 (21%) Query: 228 KRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLT------------PLEAMASGIPVVAS 275 + +L E E R F L G+G T E I Sbjct: 250 RLVLSGGEPLPPELLRRLRERFGGVRLVNGYGPTETTVVVTANLPGDPEVKPGSIGRPLP 309 Query: 276 NTGVFSELLDPENAKAGVIVPP 297 V ++LD E G VPP Sbjct: 310 GVEV--KVLDEE----GRPVPP 325 >gnl|CDD|107307 cd06312, PBP1_ABC_sugar_binding_like_4, Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Length = 271 Score = 28.8 bits (65), Expect = 2.6 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 6/29 (20%) Query: 264 EAMASGIPVVASNTGVFSELLDPENAKAG 292 A+A+GIPV++ N G DP+ + G Sbjct: 77 RAVAAGIPVISFNAG------DPKYKELG 99 >gnl|CDD|38891 KOG3687, KOG3687, KOG3687, Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. Length = 1697 Score = 28.6 bits (63), Expect = 2.8 Identities = 14/74 (18%), Positives = 27/74 (36%) Query: 91 RMPLKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIMHGVDTERFRPT 150 R+P + F + + + E + +S ER + I G E P Sbjct: 853 RLPFRKDFVNFITKGLRSNVLLSFDDIPEKDSFRARSTSLTERGKSRIQTGSADENSVPQ 912 Query: 151 SNKQEARRHLKISE 164 ++ HL+++E Sbjct: 913 ADDSLKNLHLELTE 926 >gnl|CDD|146640 pfam04109, APG9, Autophagy protein Apg9. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialized compartment essential for these vesicle-mediated alternative targeting pathways. Length = 365 Score = 27.9 bits (63), Expect = 4.0 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 10/40 (25%) Query: 213 FKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAP 252 F K QR+ A L+KR L + LN+ ++P Sbjct: 99 FLKESQRKQLAQELRKRFL----------FAGILNLLLSP 128 >gnl|CDD|37387 KOG2176, KOG2176, KOG2176, Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]. Length = 800 Score = 27.2 bits (60), Expect = 7.0 Identities = 9/42 (21%), Positives = 15/42 (35%) Query: 299 NLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340 NL E A +F+ ++ NR ER ++ Sbjct: 554 NLDYFEIAADFFLEFACHLNGIPNRDAERPSSSTKLLASRKL 595 >gnl|CDD|36726 KOG1513, KOG1513, KOG1513, Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription, Signal transduction mechanisms]. Length = 1300 Score = 26.9 bits (59), Expect = 8.7 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 296 PPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLL 349 P++ E +F + K+ M G RE ++ K+ ++I K +R+L Sbjct: 988 VPQDYKVGE----FFRDMKQAMLGVGIGVREERNGVLTVEKDCNNISKFLNRIL 1037 >gnl|CDD|37749 KOG2538, KOG2538, KOG2538, Origin recognition complex, subunit 3 [Replication, recombination and repair]. Length = 578 Score = 26.9 bits (59), Expect = 9.2 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 2/79 (2%) Query: 209 KHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMAS 268 L + + + L K + I+ + LN P++E + + + Sbjct: 401 GLRLLRIFCETLDFEARLLKYVSLIEILV-SQSHLSGLNN-DIRPVHEVLRFSSISTLRQ 458 Query: 269 GIPVVASNTGVFSELLDPE 287 + A+ + + + L DP Sbjct: 459 MLKSGANRSALHTALNDPV 477 >gnl|CDD|30732 COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]. Length = 943 Score = 26.9 bits (59), Expect = 9.3 Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 29 PIQRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLL 82 P ++ L+ GY IP++G + + T W P+ + R + M L Sbjct: 180 PDGSQVLGILLANGYSNGNEIPAVGHAHIDTAWLWPLDETERKASTSFSLVMNL 233 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.138 0.416 Gapped Lambda K H 0.267 0.0670 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,421,815 Number of extensions: 239355 Number of successful extensions: 646 Number of sequences better than 10.0: 1 Number of HSP's gapped: 581 Number of HSP's successfully gapped: 64 Length of query: 352 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 257 Effective length of database: 4,210,882 Effective search space: 1082196674 Effective search space used: 1082196674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.2 bits)