RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1
[Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)



>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
           GT1 family of glycosyltransferases and named after YqgM
           in Bacillus licheniformis about which little is known.
           Glycosyltransferases catalyze the transfer of sugar
           moieties from activated donor molecules to specific
           acceptor molecules, forming glycosidic bonds. The
           acceptor molecule can be a lipid, a protein, a
           heterocyclic compound, or another carbohydrate residue.
           This group of glycosyltransferases is most closely
           related to the previously defined glycosyltransferase
           family 1 (GT1). The members of this family may transfer
           UDP, ADP, GDP, or CMP linked sugars. The diverse
           enzymatic activities among members of this family
           reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in certain bacteria and archaea..
          Length = 374

 Score =  184 bits (468), Expect = 4e-47
 Identities = 97/368 (26%), Positives = 149/368 (40%), Gaps = 50/368 (13%)

Query: 19  GVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSI---GISSLLTCWKKPIGQNSRIWHAR 75
           G    V  L       G  + V               GI  +       + +   +    
Sbjct: 15  GAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLA 74

Query: 76  RNNEMLLGVMMRDVL----------------RMPLKLVFT-------------SPSQRNH 106
                LL     DV+                 + + LV T                 +  
Sbjct: 75  LRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLA 134

Query: 107 SRWTRYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQEARRH 159
               R  + R D +I  S+ +   +           TVI +GVDTERFRP    + ARR 
Sbjct: 135 RALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRP--APRAARRR 192

Query: 160 LKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQR 219
           L I ED  +I   GR+   KG DL ++ +  +   +P    V+VG   L+     + L+ 
Sbjct: 193 LGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLR-----EELEA 247

Query: 220 RIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT 277
                GL  R+ F+       +   Y A ++FV P LYEGFGL  LEAMA+G+PVVAS+ 
Sbjct: 248 LAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV 307

Query: 278 GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKE 337
           G   E+++    + G++VPP +  AL +A+L  ++  ++    G   RER  + FS  + 
Sbjct: 308 GGIPEVVEDG--ETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRV 365

Query: 338 ASDIGKVY 345
           A+   +VY
Sbjct: 366 AARTEEVY 373


>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
           GT1 family of glycosyltransferases. wlbH in Bordetella
           parapertussis has been shown to be required for the
           biosynthesis of a trisaccharide that, when attached to
           the B. pertussis lipopolysaccharide (LPS) core (band B),
           generates band A LPS..
          Length = 377

 Score =  163 bits (415), Expect = 6e-41
 Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 19/260 (7%)

Query: 97  VFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIER------PSTVIMHGVDTERFRPT 150
           V   P +R      R  + R D VI  S+  A  ++         TVI +GVDTERF P 
Sbjct: 129 VNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSP- 187

Query: 151 SNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKH 210
              +   R L + ED K+I   GR+   KG D  ++ +  +L   P    V+VG   L+ 
Sbjct: 188 -ADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR- 245

Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMAS 268
               + L+      GL+ R+ F+      E   +Y A ++FV P L EGFGL  LEAMA 
Sbjct: 246 ----EALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMAC 301

Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328
           G+PVVA++ G   E++     + G++VPP +  AL +A+L  +         G   R R 
Sbjct: 302 GLPVVATDVGGIPEIITDG--ENGLLVPPGDPEALAEAILRLLADPW--LRLGRAARRRV 357

Query: 329 VKHFSIVKEASDIGKVYDRL 348
            + FS    A  + ++Y  +
Sbjct: 358 AERFSWENVAERLLELYREV 377


>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
           GT1 family of glycosyltransferases. WbnK in Shigella
           dysenteriae has been shown to be involved in the type 7
           O-antigen biosynthesis..
          Length = 365

 Score =  150 bits (382), Expect = 4e-37
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 111 RYLISRMDEVITTSQKSARFIE------RPSTVIMHGVDTERFRPTSNKQEA-RRHLKIS 163
           R L S +  ++  S  +A + +      +   VI +GVDTERF P  + +   R  L + 
Sbjct: 131 RLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLP 190

Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY- 222
           ED  LIG   R+   K     +     +L   P    ++VG    +      NL+     
Sbjct: 191 EDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR-----ANLELLALK 245

Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282
             GL+ +++ + E+S +     AL++FV   L EGF    LEAMA G+PVVA++ G  +E
Sbjct: 246 ELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAE 305

Query: 283 LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIG 342
           L+       G +VPP +  AL +A+   +    +    G   RER  ++FSI        
Sbjct: 306 LVGD----TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE 361

Query: 343 KVYD 346
           ++Y 
Sbjct: 362 ELYR 365


>gnl|CDD|144209 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
           Mutations in this domain of subunit A of
           phosphatidylinositol N-acetylglucosaminyltransferase
           lead to disease (Paroxysmal Nocturnal haemoglobinuria).
           Members of this family transfer activated sugars to a
           variety of substrates, including glycogen,
           Fructose-6-phosphate and lipopolysaccharides. Members of
           this family transfer UDP, ADP, GDP or CMP linked sugars.
           The eukaryotic glycogen synthases may be distant members
           of this family.
          Length = 172

 Score =  133 bits (336), Expect = 8e-32
 Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 152 NKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPH-HPGWTAVVVGKTTLKH 210
           +++E R+ L I ED  +I   GR+   KG DL ++    +    HP    V+VG    + 
Sbjct: 1   DREEERKKLGIPEDKPIILFVGRLVPEKGLDLLLEAFALLKEQLHPNLKLVIVGDGEEE- 59

Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSS--IEDWYRALNIFVAPPLYEGFGLTPLEAMAS 268
               K L++     GL+  ++F+       + + YR  ++FV P  YEGFGL  LEAMA+
Sbjct: 60  ----KKLKKLALKLGLEDNVIFVGFVPREDLIELYRIADLFVLPSRYEGFGLVLLEAMAA 115

Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRER 327
           G+PV+AS+ G  +E++  ++ + G++V P +  AL +A+   +  +++    G   R+R
Sbjct: 116 GVPVIASDVGGPAEIV--KDGETGLLVDPGDAEALAEAIEKLLKDEELRERLGENARKR 172


>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
           GT1 family of glycosyltransferases. cap1E in
           Streptococcus pneumoniae is required for the synthesis
           of type 1 capsular polysaccharides..
          Length = 359

 Score =  126 bits (318), Expect = 1e-29
 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 31/249 (12%)

Query: 111 RYLISRMDEVITTSQ------KSARFIERPSTVIMH--GVDTERFRPTSNKQEARRHLKI 162
           R  +   D+VI  ++           I++  TV++   GVD +RF P+           I
Sbjct: 133 RLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP--------I 184

Query: 163 SEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY 222
            ED  +     R+ K KG D  ++    +    P    ++VG    ++      +++   
Sbjct: 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKL-- 242

Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282
             GL+ R+ F+  +  + +   A ++FV P   EG     LEAMA G PV+A++     E
Sbjct: 243 --GLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE 300

Query: 283 LLDP-ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDI 341
            +    N   G +VPP +  AL  A+   +   ++ +  G   R+RA + F       D 
Sbjct: 301 AVIDGVN---GFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEF-------DE 350

Query: 342 GKVYDRLLR 350
             V  +LL 
Sbjct: 351 EIVVKKLLE 359


>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
           to the GT1 family of glycosyltransferases. The
           sucrose-phosphate synthases in this family may be unique
           to plants and photosynthetic bacteria. This enzyme
           catalyzes the synthesis of sucrose 6-phosphate from
           fructose 6-phosphate and uridine 5'-diphosphate-glucose,
           a key regulatory step of sucrose metabolism. The
           activity of this enzyme is regulated by phosphorylation
           and moderated by the concentration of various
           metabolites and light..
          Length = 398

 Score =  124 bits (314), Expect = 3e-29
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 113 LISRMDEVITTS------QKSARFIERPSTVIMH-GVDTERFRPTSNKQEARRHLKISED 165
           L+   D VI ++        S          ++  GVD ERF P    +  R  L    D
Sbjct: 160 LLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPD 219

Query: 166 AKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRI-YAN 224
              I   GR+   KG D  +     +         V+VG          +   R +    
Sbjct: 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELAREL 279

Query: 225 GLKKRILF--IDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSE 282
           G+  R+ F     +  +   YRA ++FV P LYE FGLT LEAMA G+PVVA+  G   +
Sbjct: 280 GVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD 339

Query: 283 LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333
           ++   +   G++V PR+  AL  A+   +    +       G  RA   ++
Sbjct: 340 IV--VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYT 388


>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
           GT1 family of glycosyltransferases. Bme6 in Brucella
           melitensis has been shown to be involved in the
           biosynthesis of a polysaccharide..
          Length = 375

 Score =  123 bits (312), Expect = 5e-29
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 120 VITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGR 174
           V  TS++ A  I R     P  VI +GVD   F    ++   RR   I  D ++I   GR
Sbjct: 153 VHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGR-RRKFPILPDKRIILFLGR 211

Query: 175 IRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID 234
           +   KG DL ++    +    P W  V+ G     +      L++   A GL+ R+ F  
Sbjct: 212 LHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAE---LKQIAAALGLEDRVTFTG 268

Query: 235 EQSSIEDW--YRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAG 292
                +        ++FV P   E FG+   EA+A G PVV ++   + EL++      G
Sbjct: 269 MLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIE---YGCG 325

Query: 293 VIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGK 343
            +V   ++ AL  A+   +   + +   G  GR    + FS    A  + +
Sbjct: 326 WVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375


>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
           GT1 family of glycosyltransferases. wcfI in Bacteroides
           fragilis has been shown to be involved in the capsular
           polysaccharide biosynthesis..
          Length = 365

 Score =  121 bits (307), Expect = 2e-28
 Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 36/261 (13%)

Query: 94  LKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIMHGVDTERFRPTSNK 153
           L L   +PS     RW        D      + S+ F   P  VI +G+DT  FRP  +K
Sbjct: 135 LNLTIVAPS-----RWLA------DCA----RSSSLFKGIPIEVIPNGIDTTIFRP-RDK 178

Query: 154 QEARRHLKISEDAKLIGCFGRI---RKLKGTDLFVDCMINILPH--HPGWTAVVVGKTTL 208
           +EAR+ L +  D K+I  FG +      KG D  ++ +   L          VV G +  
Sbjct: 179 REARKRLGLPADKKII-LFGAVGGTDPRKGFDELIEAL-KRLAERWKDDIELVVFGASD- 235

Query: 209 KHYLFKKNLQRRIYANGLKKRIL-FIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMA 267
                                 L  +++  S+   Y A ++FV P L E F  T +EA+A
Sbjct: 236 ---------PEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALA 286

Query: 268 SGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRER 327
            G PVVA + G   +++D      G +  P +   L + + + +       + G   RE 
Sbjct: 287 CGTPVVAFDVGGIPDIVDHG--VTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAAREL 344

Query: 328 AVKHFSIVKEASDIGKVYDRL 348
           A   F    +A     +Y+ L
Sbjct: 345 AENEFDSRVQAKRYLSLYEEL 365


>gnl|CDD|30787 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
           membrane].
          Length = 381

 Score =  119 bits (298), Expect = 1e-27
 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 38/372 (10%)

Query: 5   NIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKP 64
            +  +A  ++    G    V     ++    + L +    LP  I  +  + L       
Sbjct: 20  YVLELAKALRLLGRGHEVLVIAPEKLEGLGIEVLRLPSVSLPLLIVRLRPALLRLLLLLK 79

Query: 65  IGQNSRIWHARRNNEMLLGVMMR-------------------DVLRMPLKLVFTSPSQRN 105
                 I HA        G++                      +L +P  L+     +  
Sbjct: 80  RLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLL 139

Query: 106 HSRWTRYLISRMDEVITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHL 160
             R  + L    D VI  S      +E         VI +G+DTE+F P      AR  L
Sbjct: 140 LKRLKKALRLLADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAP------ARIGL 193

Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRR 220
                  ++   GR+   KG DL ++    +    P    V+VG    +    ++ L++ 
Sbjct: 194 LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER----REELEKL 249

Query: 221 IYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278
               GL+  + F+      E  +   + ++FV P L EGFGL  LEAMA+G PV+AS+ G
Sbjct: 250 AKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309

Query: 279 VFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338
              E++  E+ + G++VPP ++  L  A+   +   ++  + G   RER  + FS  + A
Sbjct: 310 GIPEVV--EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIA 367

Query: 339 SDIGKVYDRLLR 350
             + ++Y+ LL 
Sbjct: 368 EQLLELYEELLA 379


>gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the
           GT1 family of glycosyltransferases and is named after
           WbdM in Escherichia coli. In general
           glycosyltransferases catalyze the transfer of sugar
           moieties from activated donor molecules to specific
           acceptor molecules, forming glycosidic bonds. The
           acceptor molecule can be a lipid, a protein, a
           heterocyclic compound, or another carbohydrate residue.
           This group of glycosyltransferases is most closely
           related to the previously defined glycosyltransferase
           family 1 (GT1). The members of this family may transfer
           UDP, ADP, GDP, or CMP linked sugars. The diverse
           enzymatic activities among members of this family
           reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found in
           bacteria..
          Length = 360

 Score =  107 bits (270), Expect = 4e-24
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 10/201 (4%)

Query: 135 STVIMHGVDTERFRP-TSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILP 193
           S V+ +G+DT+RFR   + + + R  L +  D  +I   GR+ + K     +     +L 
Sbjct: 156 SFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS 215

Query: 194 HHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPP 253
            +     ++ G   L+       L+R I A GL  R+  +  +  I  +Y A ++FV   
Sbjct: 216 DYLDIKLLIAGDGPLR-----ATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSS 270

Query: 254 LYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNS 313
            +EGFGL   EAMA  +PVVA++ G   E++      +G+IVP  +  AL   +   +  
Sbjct: 271 AWEGFGLVVAEAMACELPVVATDAGGVREVVGD----SGLIVPISDPEALANKIDEILKM 326

Query: 314 KKIMSDTGNRGRERAVKHFSI 334
                D     RER VK FSI
Sbjct: 327 SGEERDIIGARRERIVKKFSI 347


>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
           GT1 family of glycosyltransferases. mtfB
           (mannosyltransferase B) in E. coli has been shown to
           direct the growth of the O9-specific polysaccharide
           chain. It transfers two mannoses into the position 3 of
           the previously synthesized polysaccharide..
          Length = 365

 Score =  105 bits (265), Expect = 1e-23
 Identities = 69/245 (28%), Positives = 95/245 (38%), Gaps = 20/245 (8%)

Query: 98  FTSPSQRNHSRWTRYLISRMDEVITTSQKSAR-------FIERPSTVIMHGVDTERFRPT 150
           F+   +R   R  R  + R D +IT S+ + R              VI  GVD     P 
Sbjct: 122 FSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPP 181

Query: 151 SNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKH 210
           +  +  R    +          G I   K  +  ++    +    P    V+VGK    +
Sbjct: 182 AEAEVLRALYLL--PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLN 239

Query: 211 YLFKKNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMAS 268
                 L  R+   GL  R+ F+   S  E    YR    FV P LYEGFGL  LEAMA 
Sbjct: 240 E----ELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMAC 295

Query: 269 GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328
           G PV+ASN     E+       A +   P +  AL  A+   +    +  +   RG  RA
Sbjct: 296 GTPVIASNISSLPEVAGD----AALYFDPLDPEALAAAIERLLEDPALREELRERGLARA 351

Query: 329 VKHFS 333
            K FS
Sbjct: 352 -KRFS 355


>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
           GT1 family of glycosyltransferases. AmSD in Erwinia
           amylovora has been shown to be involved in the
           biosynthesis of amylovoran, the acidic exopolysaccharide
           acting as a virulence factor. This enzyme may be
           responsible for the formation of  galactose alpha-1,6
           linkages in amylovoran..
          Length = 348

 Score =  103 bits (259), Expect = 8e-23
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 163 SEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIY 222
              +K I   GR+   KG DL ++    I   HP W   +VG    +     + L+  I 
Sbjct: 175 DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER-----EALEALIK 229

Query: 223 ANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASN--TGVF 280
             GL+ R++ +    +IE++Y   +IFV    +EGF +  LEAMA G+PV++ +  TG  
Sbjct: 230 ELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP- 288

Query: 281 SELLDP-ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334
           SE+++   N   G++VP  ++ AL +A+L  M  +++    G   RE A + FSI
Sbjct: 289 SEIIEDGVN---GLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-ERFSI 339


>gnl|CDD|99983 cd03812, GT1_CapH_like, This family is most closely related to the
           GT1 family of glycosyltransferases. capH in
           Staphylococcus aureus has been shown to be required for
           the biosynthesis of the type 1 capsular polysaccharide
           (CP1)..
          Length = 358

 Score =  101 bits (255), Expect = 2e-22
 Identities = 46/173 (26%), Positives = 96/173 (55%), Gaps = 11/173 (6%)

Query: 111 RYLISRM-DEVITTSQKSARFI-----ERPSTVIMHGVDTERFRPTSNKQEARRHLKISE 164
           R LI+R+  + +  S+++ +++      +   VI +G+D E+F      ++ RR L I E
Sbjct: 131 RKLINRLATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILE 190

Query: 165 DAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYAN 224
           D  +IG  GR  + K  +  ++    +L  +P    ++VG   L+     + +++++   
Sbjct: 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELE-----EEIKKKVKEL 245

Query: 225 GLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT 277
           GL+ +++F+  ++ + +  +A+++F+ P LYEG  L  +EA ASG+P + S+T
Sbjct: 246 GLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT 298


>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
           GT1 family of glycosyltransferases.
           UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
           also known as 1,2-diacylglycerol 3-glucosyltransferase)
           catalyzes the transfer of glucose from UDP-glucose to
           1,2-diacylglycerol forming
           3-D-glucosyl-1,2-diacylglycerol..
          Length = 374

 Score =  100 bits (252), Expect = 5e-22
 Identities = 80/298 (26%), Positives = 124/298 (41%), Gaps = 44/298 (14%)

Query: 79  EMLLGVMMRDVLR-MPLKLVFT---------------SPSQRNHSRW--TRYLISRMDEV 120
              LG++   V R + + +V T                   R   R   +R   +R D V
Sbjct: 93  PFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAV 152

Query: 121 ITTSQKSARFIER-----PSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRI 175
           I  S+K A  +       P  VI  G+D +RF P     E RR L I ED  ++   GR+
Sbjct: 153 IAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDE-RRKLGIPEDEPVLLYVGRL 211

Query: 176 RKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDE 235
            K K  D  +     +L   P    V+VG    +     + L+      GL  R++F   
Sbjct: 212 AKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPER-----EELEELARELGLADRVIFTGF 266

Query: 236 QSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELL-DPENAKAG 292
               E  D+Y+A ++FV     E  GL  LEAMA+G+PVVA +     +L+ D EN   G
Sbjct: 267 VPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGEN---G 323

Query: 293 VIVPPRNLHALEKAVLYFMN--SKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRL 348
            + PP +    E  +    +   ++ +S       E + + FS  K    + K+Y+ +
Sbjct: 324 FLFPPGDEALAEALLRLLQDPELRRRLSKNA----EESAEKFSFAK---KVEKLYEEV 374


>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in bacteria and eukaryotes..
          Length = 364

 Score = 99.6 bits (249), Expect = 1e-21
 Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 23/239 (9%)

Query: 100 SPSQRNHSRWTRYLISRMDEVITTS-----QKSARFIERPSTVIMHGVDTERFRPTSNKQ 154
            P       + R+  +R D V+  S     +  AR   R   +   GVDTE F P   + 
Sbjct: 128 GPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVR-LWPRGVDTELFHP-RRRD 185

Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFK 214
           EA R      D  ++   GR+   K  +  +D  +  L   P    V+VG    +     
Sbjct: 186 EALRARLGPPDRPVLLYVGRLAPEKNLEALLDADLP-LRRRPPVRLVIVGDGPAR----- 239

Query: 215 KNLQRRIYANGLKKRILFIDEQSSIE--DWYRALNIFVAPPLYEGFGLTPLEAMASGIPV 272
             L+ R Y N     + F+      E    Y + ++FV P   E FGL  LEAMASG+PV
Sbjct: 240 ARLEAR-YPN-----VHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPV 293

Query: 273 VASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKH 331
           VA + G  ++++     + G++V P +  A   A+   +   ++      R R  A + 
Sbjct: 294 VAPDAGGPADIVTDG--ENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERR 350


>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
           GT1 family of glycosyltransferases. WabH in Klebsiella
           pneumoniae has been shown to transfer a GlcNAc residue
           from UDP-GlcNAc onto the acceptor GalUA residue in the
           cellular outer core..
          Length = 353

 Score = 99.3 bits (248), Expect = 1e-21
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 22/244 (9%)

Query: 102 SQRNHSRWTRYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQ 154
            +       R L  R D+++  S+     + +          VI + +D E  R  + + 
Sbjct: 121 RKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEP 180

Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFK 214
                L I  D  +I   GR+   KG D  +     +    P    V++G   L+     
Sbjct: 181 ---LELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----- 232

Query: 215 KNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVA 274
           + L+      GL  R+ F+  QS+   + +A ++FV    YEGF    LEAMA G PVVA
Sbjct: 233 EELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA 292

Query: 275 SN-TGVFSELLDPENAKAGVIVPPRN---LHALEKAVLYFMNSKKIMSDTGNRGRERAVK 330
           ++  G   E+L  E+ + G++VP  +   L A   A+L  +   ++        RER  +
Sbjct: 293 TDCPGP-REIL--EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAR 349

Query: 331 HFSI 334
            +S 
Sbjct: 350 EYSK 353


>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
           GT1 family of glycosyltransferases. WavL in Vibrio
           cholerae has been shown to be involved in the
           biosynthesis of the lipopolysaccharide core..
          Length = 355

 Score = 97.3 bits (243), Expect = 6e-21
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 9/205 (4%)

Query: 136 TVIMHGVDTERFRPTSNKQE----ARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINI 191
            VI  GVD +RF P +   E      R   + +   +I   GR+ + KG ++F++ +  +
Sbjct: 151 RVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARL 210

Query: 192 LPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVA 251
               P    ++VG        +   L   I   GL+ R+ F+   S +   Y   +I V+
Sbjct: 211 KKDDPDVHLLIVGDA-QGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVS 269

Query: 252 PPLY-EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYF 310
                E FG T +EA A G PV+AS+ G   E + P     G++VPP +  AL +A+   
Sbjct: 270 ASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVRPGE--TGLLVPPGDAEALAQALDQI 327

Query: 311 MNSKKIMSDT-GNRGRERAVKHFSI 334
           ++           + R      FS 
Sbjct: 328 LSLLPEGRAKMFAKARMCVETLFSY 352


>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in bacteria, while some of them are also found in
           Archaea and eukaryotes..
          Length = 475

 Score = 89.6 bits (223), Expect = 1e-18
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 28/244 (11%)

Query: 108 RWTR--YLISRM-----DEVITTSQKSARF-IE---RPST--VIMHGVDTERFRPTSNKQ 154
            W R    + R+     D + T  + +    IE    P    VI +G+D ERF P     
Sbjct: 229 LWIRFFESLGRLAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPAR--- 285

Query: 155 EARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTT-LKHYLF 213
              R  K      ++G  GR+  +K    F+     +    P     V+G T     Y  
Sbjct: 286 -RARPEKE---PPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYA- 340

Query: 214 KKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273
            +  +  + + GL+  + F   Q+ ++++   L++ V   + EG  L  LEAMA+GIPVV
Sbjct: 341 -EECRELVESLGLEDNVKFTGFQN-VKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVV 398

Query: 274 ASNTGVFSELL---DPEN-AKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAV 329
           A++ G   EL+   D E    AG +VPP +  AL +A+L  +   ++    G  GR+R  
Sbjct: 399 ATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVE 458

Query: 330 KHFS 333
           ++++
Sbjct: 459 RYYT 462


>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
           glycosyltransferases found specifically in certain
           bacteria. amsK in Erwinia amylovora, has been reported
           to be involved in the biosynthesis of amylovoran, a
           exopolysaccharide acting as a virulence factor..
          Length = 355

 Score = 85.3 bits (212), Expect = 2e-17
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 30/243 (12%)

Query: 111 RYLISRMDEVITTSQKSARFIER-------PSTVIMHGVDTERFRPTSNKQEARRHLKIS 163
              ++R D V+  S+ + + + R          V+  GVD ERF P          L+I 
Sbjct: 125 DEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPP-PGEPLRI- 182

Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYA 223
                    GR+ + KG D  ++ +  +      +   +VG   L+       L+  I  
Sbjct: 183 ------LSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR-----DELEALIAE 231

Query: 224 NGLKKRILFIDEQSSIE--DWYRALNIFVAPPL------YEGFGLTPLEAMASGIPVVAS 275
            GL+ R+  +  +S  E  +  RA ++FV P +       EG  +  +EAMA G+PV+++
Sbjct: 232 LGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVIST 291

Query: 276 NTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIV 335
           +     EL++    + G++VPP +  AL  A+   ++  ++  + G  GR R  + F I 
Sbjct: 292 DVSGIPELVEDG--ETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349

Query: 336 KEA 338
           K+A
Sbjct: 350 KQA 352


>gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in bacteria, while some of them are also found in
           Archaea and eukaryotes..
          Length = 371

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 25/250 (10%)

Query: 110 TRYLISRMDEVITTSQKSAR-----F-IERPSTVIMHGVDTERFRPTSNKQEARRHLKIS 163
           TR+ I + D V   S+   +     F I +   VI + VD +RFRP  ++   RR     
Sbjct: 136 TRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLG-AP 194

Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLF-----KKNLQ 218
           E  K++      R +K  D   D  I I        A V  +   +  L      +   +
Sbjct: 195 EGEKVLIHISNFRPVKRID---DV-IRIF-------AKVRKEVPARLLLVGDGPERSPAE 243

Query: 219 RRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTG 278
           R     GL+  +LF+ +Q  +E+     ++F+ P   E FGL  LEAMA G+PVVASN G
Sbjct: 244 RLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG 303

Query: 279 VFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338
              E++     + G +V   ++ A+ +  L  +   ++  +     R RA + F   +  
Sbjct: 304 GIPEVVKHG--ETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIV 361

Query: 339 SDIGKVYDRL 348
                +Y RL
Sbjct: 362 PQYEALYRRL 371


>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP-linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in bacteria and eukaryotes..
          Length = 357

 Score = 82.2 bits (204), Expect = 2e-16
 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 22/235 (9%)

Query: 110 TRYLISRMDEVITTSQKSARF------IERPSTVIMHGVDTERFRPTSNKQEARRHLKIS 163
            R  + R D ++ TS   A              VI  G+D  R+             + +
Sbjct: 131 QRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPR--PDALEEAIWRRA 188

Query: 164 EDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYA 223
                    GR+   KG    +D ++      P    V+VG+  L+  L     +    A
Sbjct: 189 AGRPFFLFVGRLVYYKG----LDVLLEAAAALPDAPLVIVGEGPLEAEL-----EALAAA 239

Query: 224 NGLKKRILFIDEQSSIEDW--YRALNIFVAP-PL-YEGFGLTPLEAMASGIPVVASNTGV 279
            GL  R+ F+      E      A ++FV P     E FG+  LEAMA G PV+++  G 
Sbjct: 240 LGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT 299

Query: 280 FSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334
               ++  +   G++VPP +  AL +A+   +   ++    G   RERA + F+ 
Sbjct: 300 GGSYVN-LHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTA 353


>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
           GT1 family of glycosyltransferases. wbuB in E. coli is
           involved in the biosynthesis of the O26 O-antigen.  It
           has been proposed to function as an
           N-acetyl-L-fucosamine (L-FucNAc) transferase..
          Length = 394

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 23/240 (9%)

Query: 107 SRWTRYLISRMDEVITTSQKSARFIERPS------TVIMHGVDTERFRPTSNKQEARRHL 160
            +  R +  R D ++  S     ++ R        +VI +GVD E F+P     E+ R  
Sbjct: 156 RKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKP-PPADESLRKE 214

Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRR 220
              +D  ++   G I + +G D  ++    +L   P    ++VG         K+ L+  
Sbjct: 215 LGLDDKFVVLYAGNIGRAQGLDTLLEAA-ALLKDRPDIRFLIVGDGP-----EKEELKEL 268

Query: 221 IYANGLKKRILFIDEQS--SIEDWYRALNIFVAP--PLYEGFGLTP---LEAMASGIPVV 273
             A GL   + F+       + +   A ++ + P  P     G++P    E MA+G PV+
Sbjct: 269 AKALGLD-NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVL 327

Query: 274 ASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333
           AS  G  +EL+  E A AG++VPP +  AL  A+L  ++  +  ++ G  GR    + FS
Sbjct: 328 ASVDGESAELV--EEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385


>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. The structures of the formed
           glycoconjugates are extremely diverse, reflecting a wide
           range of biological functions. The members of this
           family share a common GTB topology, one of the two
           protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility..
          Length = 229

 Score = 81.5 bits (201), Expect = 3e-16
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 128 ARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDC 187
           AR +  P  + +HGV+         +      L +S         GR+   KG D  ++ 
Sbjct: 71  ARLLGIPLVLTVHGVNRSLL-----EGVPLSLLALSIGLADKVFVGRLAPEKGLDDLIEA 125

Query: 188 MINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIED---WYR 244
              +    P    V+ G    +     + L+  + A  L  R++F+      E       
Sbjct: 126 FALLKERGPDLKLVIAGDGPER-----EYLEELLAALLLLDRVIFLGGLDPEELLALLLA 180

Query: 245 ALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIV 295
           A ++FV P L EGFGL  LEAMA G+PV+A++ G   E++  E+   G++V
Sbjct: 181 AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIV--EDGLTGLLV 229


>gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to
           the GT1 family of glycosyltransferases. ORF704 in E.
           coli has been shown to be involved in the biosynthesis
           of O-specific mannose homopolysaccharides..
          Length = 366

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 29/221 (13%)

Query: 106 HSRWTRYLISRMDEVITTSQKSAR-FIERPS----TVIMHGVDTERFRPTSNKQEARRHL 160
                R L+ R D VI  S +  R  + R       VI HGV      P +   E+ + L
Sbjct: 124 DRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGV----PDPPAEPPESLKAL 179

Query: 161 KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKT---TLKHYLFKKNL 217
              +   ++  FG +R  KG +L ++ +  ++  HP    +V G+T     ++      L
Sbjct: 180 GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYAL 239

Query: 218 QRRIYANGLKKRILFIDEQSSIEDWYRAL---NIFVAPPLYEGFGLT-----PLEAMASG 269
             R    GL  R++FI+     E+        ++ V P  Y     T        A+  G
Sbjct: 240 AER---LGLADRVIFINRYLPDEELPELFSAADVVVLP--YRSADQTQSGVLAY-AIGFG 293

Query: 270 IPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYF 310
            PV+++  G   E+LD      G++VPP +  AL +A+   
Sbjct: 294 KPVISTPVGHAEEVLDGGT---GLLVPPGDPAALAEAIRRL 331


>gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of
           sugar moieties from activated donor molecules to
           specific acceptor molecules, forming glycosidic bonds.
           The acceptor molecule can be a lipid, a protein, a
           heterocyclic compound, or another carbohydrate residue.
           This group of glycosyltransferases is most closely
           related to the previously defined glycosyltransferase
           family 1 (GT1). The members of this family may transfer
           UDP, ADP, GDP, or CMP linked sugars. The diverse
           enzymatic activities among members of this family
           reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility..
          Length = 367

 Score = 77.7 bits (192), Expect = 4e-15
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 25/211 (11%)

Query: 136 TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195
            V   GVDT +F P +  +   R L            GR  + KG  L ++    +    
Sbjct: 168 HVHPIGVDTAKFTPATPARRPPRIL----------FVGRFVEKKGPLLLLEAFARLARRV 217

Query: 196 PGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQS--SIEDWYRALNIFVAPP 253
           P    V++G   L        L+    A GL  R+ F+  Q    + +  R   IF+ P 
Sbjct: 218 PEVRLVIIGDGPLL-----AALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272

Query: 254 LY------EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAV 307
           +       EG  +  LEA ASG+PVVA+  G   E +  E+ + G++VP  ++ AL  A+
Sbjct: 273 VTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAV--EDGETGLLVPEGDVAALAAAL 330

Query: 308 LYFMNSKKIMSDTGNRGRERAVKHFSIVKEA 338
              +    + +  G  GR R  + F + ++ 
Sbjct: 331 GRLLADPDLRARMGAAGRRRVEERFDLRRQT 361


>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
           GT1 family of glycosyltransferases.  wbaZ in Salmonella
           enterica has been shown to possess the mannosyl
           transferase activity. The members of this family are
           found in certain bacteria and Archaea..
          Length = 351

 Score = 69.9 bits (172), Expect = 9e-13
 Identities = 66/238 (27%), Positives = 96/238 (40%), Gaps = 48/238 (20%)

Query: 106 HSRWTRYLISRMDEVITTSQKSARFIE----RPSTVIMHGVDTERFRPTSNKQEARRHLK 161
              W R   +R+D  I  S+  AR I+    R +TVI   VDT+RF P   K        
Sbjct: 143 LRIWDRRSAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAEEK-------- 194

Query: 162 ISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRI 221
             ED  L    GR+   K  DL ++    +     G   VV+G          + L+   
Sbjct: 195 --EDYYL--SVGRLVPYKRIDLAIEAFNKL-----GKRLVVIGD----GPELDR-LRA-- 238

Query: 222 YANGLKKRILFIDEQSS--IEDWY---RALNIFVAPPLYEGFGLTPLEAMASGIPVVASN 276
                   + F+   S   + D Y   RA  +F A    E FG+ P+EAMASG PV+A  
Sbjct: 239 ---KAGPNVTFLGRVSDEELRDLYARARAF-LFPA---EEDFGIVPVEAMASGTPVIAYG 291

Query: 277 TGVFSE-LLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFS 333
            G   E ++D      G++   + + +L  AV  F  ++          R  A + FS
Sbjct: 292 KGGALETVIDGVT---GILFEEQTVESLAAAVERFEKNEDFDPQA---IRAHA-ERFS 342


>gnl|CDD|36327 KOG1111, KOG1111, KOG1111, N-acetylglucosaminyltransferase complex,
           subunit PIG-A/SPT14, required for phosphatidylinositol
           biosynthesis/Sulfolipid synthase [Cell
           wall/membrane/envelope biogenesis, Posttranslational
           modification, protein turnover, chaperones, Lipid
           transport and metabolism].
          Length = 426

 Score = 66.9 bits (163), Expect = 7e-12
 Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 38/279 (13%)

Query: 92  MPLKLVFTSPS----QRNHSRWT----RYLISRMDEVITTSQKS--------ARFIERPS 135
           M LK VFT  S        S  T       ++ +D +I  S  S        A    + S
Sbjct: 113 MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVS 172

Query: 136 TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195
            VI + V T  F P +         K S D   I    R+   KG DL ++ + ++   H
Sbjct: 173 -VIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKH 224

Query: 196 PGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID--EQSSIEDWYRALNIFVAPP 253
           P    +++G    K    ++ L++      L+ R++ +       + D     +IF+   
Sbjct: 225 PEVRFIIIGDGP-KRIDLEEMLEK----LFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTS 279

Query: 254 LYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNS 313
           L E F +  +EA + G+PVV++  G   E+L  +    G   P   + A+EKA+      
Sbjct: 280 LTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAI------ 333

Query: 314 KKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352
              +        +R  K +S    A    KVYDR   T+
Sbjct: 334 -TKLRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371


>gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to
           the GT1 family of glycosyltransferases. aviGT4 in
           Streptomyces viridochromogenes has been shown to be
           involved in biosynthesis of oligosaccharide antibiotic
           avilamycin A. Inactivation of aviGT4 resulted in a
           mutant that accumulated a novel avilamycin derivative
           lacking the terminal eurekanate residue..
          Length = 335

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 42/227 (18%)

Query: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCF-GRIRKLK 179
           I+ +Q+           + +G+D + +     +     +L           F GRI   K
Sbjct: 138 ISDAQRRPWPPLPWVATVHNGIDLDDYPF---RGPKGDYL----------LFLGRISPEK 184

Query: 180 GTDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSI 239
           G  L +           G    + G  +   Y F + +   +        I ++ E    
Sbjct: 185 GPHLAIR-----AARRAGIPLKLAGPVSDPDY-FYREIAPELLDG---PDIEYLGEVGG- 234

Query: 240 EDWYRALN-----IFVAPPLY-EGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGV 293
            +    L      +F  P L+ E FGL  +EAMA G PV+A   G   E+++      G 
Sbjct: 235 AEKAELLGNARALLF--PILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDG--VTGF 290

Query: 294 IVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340
           +V   ++  L  AV       +         R RA + FS  +   D
Sbjct: 291 LVD--SVEELAAAV------ARADRLDRAACRRRAERRFSAARMVDD 329


>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
           GT1 family of glycosyltransferases. ExpE7 in
           Sinorhizobium meliloti has been shown to be involved in
           the biosynthesis of galactoglucans (exopolysaccharide
           II)..
          Length = 359

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 130 FIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMI 189
                 +VI +G+D +R +    +      L+        G  G++   KG DL ++   
Sbjct: 163 LFAEKISVIRNGIDLDRAKRPR-RAPPGGRLRF-------GFIGQLTPHKGVDLLLEAFK 214

Query: 190 NILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFID--EQSSIEDWYRALN 247
             LP       V+VG            L+   Y      R+ F+    Q  I+D+Y  ++
Sbjct: 215 R-LPR-GDIELVIVGN--------GLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEID 264

Query: 248 IFVAPPL-YEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKA 306
           + V P +  E F L   EA+A+G+PV+AS+ G  +EL+       G++ PP +   L  A
Sbjct: 265 VLVVPSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDG--VNGLLFPPGDAEDLAAA 322

Query: 307 VL 308
           + 
Sbjct: 323 LE 324


>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
           GT1 family of glycosyltransferases and is named after
           gtfA in Streptococcus gordonii, where it plays a role in
           the O-linked glycosylation of GspB, a cell surface
           glycoprotein involved in platelet binding.  In general
           glycosyltransferases catalyze the transfer of sugar
           moieties from activated donor molecules to specific
           acceptor molecules, forming glycosidic bonds. The
           acceptor molecule can be a lipid, a protein, a
           heterocyclic compound, or another carbohydrate residue.
           This group of glycosyltransferases is most closely
           related to the previously defined glycosyltransferase
           family 1 (GT1). The members of this family may transfer
           UDP, ADP, GDP, or CMP linked sugars. The diverse
           enzymatic activities among members of this family
           reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found in
           bacteria..
          Length = 372

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 214 KKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVV 273
           ++ L+  I   GL+  +        +++ Y+   + +     EGFGL+ +EA++ G+PV+
Sbjct: 247 EEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVI 306

Query: 274 ASNT--GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKK 315
           + +   G  SE++  E+ + G +VP  ++ AL +A++  +N  K
Sbjct: 307 SYDVNYGP-SEII--EDGENGYLVPKGDIEALAEAIIELLNDPK 347


>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
           reversibly catalyzes trehalose synthesis and degradation
           from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
           glucose. The catalyzing activity includes the
           phosphorolysis of trehalose, which produce alpha-Glc-1-P
           and glucose, and the subsequent synthesis of trehalose.
           This family is most closely related to the GT1 family of
           glycosyltransferases..
          Length = 372

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 256 EGFGLTPLEAMASGIPVVASNT-GVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSK 314
           EGFGLT  EA+  G PV+A    G+  ++ D E    G +V           +LY +   
Sbjct: 284 EGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGET---GFLVDTVE--EAAVRILYLLRDP 338

Query: 315 KIMSDTGNRGRERAVKHFSIVKEASD 340
           ++    G   RE   ++F I +   D
Sbjct: 339 ELRRKMGANAREHVRENFLITRHLKD 364


>gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the
           GT1 family of glycosyltransferases.  ALG2, a
           1,3-mannosyltransferase, in yeast catalyzes the
           mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate
           and Man(1)GlcNAc(2)-dolichol diphosphate to form
           Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of
           this enzyme causes an abnormal accumulation of
           Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol,
           which is associated with a type of congenital disorders
           of glycosylation (CDG), designated CDG-Ii, in humans..
          Length = 392

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 253 PLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMN 312
           P  E FG+ PLEAM +G PV+A N+G   E +   + + G +  P       +A+L   N
Sbjct: 307 PSNEHFGIVPLEAMYAGKPVIACNSGGPLETVV--DGETGFLCEP-TPEEFAEAMLKLAN 363

Query: 313 SKKIMSDTGNRGRERAVKHFS 333
              +    G  GR+R  + FS
Sbjct: 364 DPDLADRMGAAGRKRVKEKFS 384


>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most
           closely related to the GT1 family of
           glycosyltransferases. Glycogen synthase catalyzes the
           formation and elongation of the alpha-1,4-glucose
           backbone using ADP-glucose, the second and key step of
           glycogen biosynthesis. This family includes starch
           synthases of plants, such as DULL1 in Zea mays and
           glycogen synthases of various organisms..
          Length = 476

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 67/251 (26%)

Query: 118 DEVITTSQKSARFIERPS----------------TVIMHGVDTERFRP------------ 149
           D V T S   AR I  P                 + I++G+D + + P            
Sbjct: 212 DAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSA 271

Query: 150 --TSNKQEARRHL------KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHHPGWTAV 201
                K E +  L       +  DA L G  GR+ + KG DL ++ +  +L        V
Sbjct: 272 DDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQL--V 329

Query: 202 VVGK--TTLKHYLFKKNLQRRIYANGLKKRILFI---DEQSS--IEDWYRALNIFVAPPL 254
           ++G      +  L +        A     R+  +   DE  +  I   Y   + F+ P  
Sbjct: 330 ILGSGDPEYEEALRE-------LAARYPGRVAVLIGYDEALAHLI---YAGADFFLMPSR 379

Query: 255 YEGFGLTPLEAMASGIPVVASNTG-----VFSELLDPENAKA-GVIVPPRN----LHALE 304
           +E  GLT + AM  G   +   TG     V     + +  +  G +    N    L AL 
Sbjct: 380 FEPCGLTQMYAMRYGTVPIVRATGGLADTVID--YNEDTGEGTGFVFEGYNADALLAALR 437

Query: 305 KAVLYFMNSKK 315
           +A+  + + + 
Sbjct: 438 RALALYRDPEA 448


>gnl|CDD|36071 KOG0853, KOG0853, KOG0853, Glycosyltransferase [Cell
           wall/membrane/envelope biogenesis].
          Length = 495

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 215 KNLQRRIYANGLKKRILFIDEQSSIEDWYRALN----IFVAPPLYEGFGLTPLEAMASGI 270
           K L   I    L  + ++    ++    YR       +   P   E FG+ P+EAMA G+
Sbjct: 332 KELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPA-NEHFGIVPIEAMACGL 390

Query: 271 PVVASNTGVFSELLDPENAKAGVIVPP--RNLHALEKAVLYFMNSKKIMSDTGNRGRERA 328
           PVVA+N G  +E++   +   G+++ P    +  L  A+L      ++ +  G  G +R 
Sbjct: 391 PVVATNNGGPAEIV--VHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRV 448

Query: 329 VKHFS 333
            + FS
Sbjct: 449 KEMFS 453


>gnl|CDD|30645 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and
           metabolism].
          Length = 487

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 152 NKQEARRHLKISEDAK--LIGCFGRIRKLKGTDLFVDCMINILPH--HPGWTAVVVGK-- 205
           NK   +  L +  D    L G   R+   KG DL    ++  +      GW  V++G   
Sbjct: 278 NKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDL----LLEAIDELLEQGWQLVLLGTGD 333

Query: 206 TTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEA 265
             L+  L  + L  R    G    ++  DE  +    Y   ++ + P  +E  GLT L A
Sbjct: 334 PELEEAL--RALASRH--PGRVLVVIGYDEPLAHL-IYAGADVILMPSRFEPCGLTQLYA 388

Query: 266 MASGIPVVASNTG-----VFSELLDPENAKA-GVIVPPRN----LHALEKAVLYFMNSKK 315
           M  G   +   TG     V             G +    N     +AL +A++ +     
Sbjct: 389 MRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL 448

Query: 316 IM 317
           + 
Sbjct: 449 LW 450


>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the
           GT1 family of glycosyltransferases. Phosphatidylinositol
           glycan-class A (PIG-A), an X-linked gene in humans, is
           necessary for the synthesis of
           N-acetylglucosaminyl-phosphatidylinositol, a very early
           intermediate in glycosyl phosphatidylinositol
           (GPI)-anchor biosynthesis. The GPI-anchor is an
           important cellular structure that facilitates the
           attachment of many proteins to cell surfaces. Somatic
           mutations in PIG-A have been associated with Paroxysmal
           Nocturnal Hemoglobinuria (PNH), an acquired
           hematological disorder..
          Length = 398

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 73/284 (25%), Positives = 110/284 (38%), Gaps = 48/284 (16%)

Query: 92  MPLKLVFTSPSQRNHS-------------RWTRYLISRMDEVITTSQKSA-----RFIER 133
           M LK VFT     +HS             +  R+ ++ +D VI  S  S      R    
Sbjct: 112 MGLKTVFT-----DHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLD 166

Query: 134 PS--TVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDLFVDCMINI 191
           P   +VI + VD+  F P  +K+          D   I    R+   KG DL V  +  I
Sbjct: 167 PERVSVIPNAVDSSDFTPDPSKR--------DNDKITIVVISRLVYRKGIDLLVGIIPEI 218

Query: 192 LPHHPGWTAVVVG----KTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALN 247
              HP    ++ G    +  L+    K NLQ R+        +L       + D     +
Sbjct: 219 CKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRV-------ELLGAVPHERVRDVLVQGH 271

Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAV 307
           IF+   L E F +  +EA + G+ VV++  G   E+L P+            +  LE+A+
Sbjct: 272 IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAI 331

Query: 308 LYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRT 351
                 K       NR +    K +S    A    KVYDR+L+T
Sbjct: 332 SILRTGKHDPWSFHNRVK----KMYSWEDVAKRTEKVYDRILQT 371


>gnl|CDD|30729 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate
           transport and metabolism].
          Length = 486

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 40/228 (17%)

Query: 141 GVDTERFRPTSNKQEARRHL-----KISEDAKLIGCFGRIRKLKGTDLFVDCMINILPHH 195
           G+D E F         +  +     ++  + KLI    R+   KG    +     +L  +
Sbjct: 252 GIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEY 311

Query: 196 PGW----TAVVVGKTTLKHYLFKKNLQRRI----------YANGLKKRILFIDEQSSIED 241
           P W      + +   + +     + L+ +I          + +     + ++       +
Sbjct: 312 PEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNE 371

Query: 242 W---YRALNIFVAPPLYEGFGLTPLEAMA-----SGIPVVASNTGVFSELLDPENAKAGV 293
               YRA ++ +  PL +G  L   E +A      G+ +++   G  SEL D       +
Sbjct: 372 LLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD------AL 425

Query: 294 IVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDI 341
           IV P +   +  A+   +     MS      R+   +         D+
Sbjct: 426 IVNPWDTKEVADAIKRALT----MS---LEERKERHEKLLKQVLTHDV 466


>gnl|CDD|99967 cd03793, GT1_Glycogen_synthase_GSY2_like, Glycogen synthase, which
           is most closely related to the GT1 family of
           glycosyltransferases, catalyzes the transfer of a
           glucose molecule from UDP-glucose to a terminal branch
           of a glycogen molecule, a rate-limit step of glycogen
           biosynthesis. GSY2, the member of this family in S.
           cerevisiae, has been shown to possess glycogen synthase
           activity..
          Length = 590

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296
           E++ R  ++ V P  YE +G TP E    GIP + +N    G F E    +    G+ + 
Sbjct: 469 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIV 528

Query: 297 PRNLHALEKAV 307
            R   + +++V
Sbjct: 529 DRRFKSPDESV 539


>gnl|CDD|31708 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
           envelope biogenesis, outer membrane].
          Length = 419

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 54/264 (20%), Positives = 89/264 (33%), Gaps = 42/264 (15%)

Query: 93  PLKLVFTSPSQRNHSRWTRY------LISRMDEVITTSQKSA-RFIE------------- 132
           PL LV    S R+ +R+ +       L   +D ++  S++ A RF               
Sbjct: 148 PLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLK 207

Query: 133 ---RPSTVIMHGVDTERFRPTSNKQEARRHLKIS----EDAKLIGCFGRIRKLKGTDLFV 185
               P   +   +   R +           +  S    E+  ++     ++K      F 
Sbjct: 208 FDIEPPPQLAAELAALRRQL---GGHRPVWVAASTHEGEEEIILDAHQALKKQ-----FP 259

Query: 186 DCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRA 245
           + ++ ++P HP     V      K        + +         +L  D    +   Y  
Sbjct: 260 NLLLILVPRHPERFKAVENLLKRKG--LSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGI 317

Query: 246 LNI-FVAPPLYEGFGLTPLEAMASGIPVVAS-NTGVFSELL-DPENAKAGVIVPPRNLHA 302
            +I FV   L    G  PLE  A G PV+    T  FS++      A AG+ V   +L  
Sbjct: 318 ADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADL-- 375

Query: 303 LEKAVLYFMNSKKIMSDTGNRGRE 326
           L KAV   +  +      G  G E
Sbjct: 376 LAKAVELLLADEDKREAYGRAGLE 399


>gnl|CDD|99988 cd03818, GT1_ExpC_like, This family is most closely related to the
           GT1 family of glycosyltransferases. ExpC in Rhizobium
           meliloti has been shown to be involved in the
           biosynthesis of galactoglucan (exopolysaccharide II)..
          Length = 396

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 49/228 (21%)

Query: 136 TVIMHGVDTERFRPTSNKQEARRHL----KISEDAKLIGCFGR-IRKLKGTDLFVDCMIN 190
           +VI  G+DT+R RP  + Q AR  L     ++   ++I    R +   +G  +F+  +  
Sbjct: 180 SVIHDGIDTDRLRP--DPQ-ARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPR 236

Query: 191 ILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKK----RILFIDEQSSIEDWYRAL 246
           +L   P    V+VG                 Y          +   +DE     D  R  
Sbjct: 237 LLRARPDARVVIVGGD------------GVSYGAPPPDGESWKQHMLDELGGRLDLSR-- 282

Query: 247 NIFVAPPL-YEGF-----------GLT-P-------LEAMASGIPVVASNTGVFSELLDP 286
            +     + Y+ +            LT P       LEAMA G  VV S+T    E++  
Sbjct: 283 -VHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVI-- 339

Query: 287 ENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSI 334
            + + G++V   +  AL  AV+  ++     +      R  A+++  +
Sbjct: 340 TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLL 387


>gnl|CDD|38946 KOG3742, KOG3742, KOG3742, Glycogen synthase [Carbohydrate
           transport and metabolism].
          Length = 692

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296
           E++ R  ++ V P  YE +G TP E    GIP V +N    G F E    +    G+ + 
Sbjct: 495 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIV 554

Query: 297 PRNLHALEKAV 307
            R   + +++V
Sbjct: 555 DRRFKSPDESV 565


>gnl|CDD|144539 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members
           of this family belong to glycosyl transferase family 20.
           OtsA (Trehalose-6-phosphate synthase) is homologous to
           regions in the subunits of yeast trehalose-6-phosphate
           synthase/phosphate complex,.
          Length = 470

 Score = 36.9 bits (86), Expect = 0.008
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 40/252 (15%)

Query: 115 SRMDEVITTSQKSARFIERPSTVIMH--GVDTERFRPTSNKQEARRHLK-ISE----DAK 167
           SR+  + TTS     +  R  +V     G+D  R          +  +K + E      K
Sbjct: 214 SRLLGLETTSDGGVEYGGRTVSVGAFPIGIDPGRIESGLKSPSVQEKVKELKERFGNKKK 273

Query: 168 LIGCFGRIRKLKGTDLFVDCMINILPHHPGW----TAVVVGKTTLKHYLFKKNLQRRIYA 223
           LI    R+  +KG    +      L  +P W      V +   +       +NL+ ++  
Sbjct: 274 LILGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVPSRGDVEEYQNLRSQVEE 333

Query: 224 -----NGL-----KKRILFIDEQSSIEDW---YRALNIFVAPPLYEGFGLTPLEAMAS-- 268
                NG         +  +      ++    Y   ++ +   L +G  L   E +A   
Sbjct: 334 LVGRINGEFGTLDYTPVHHLHRSLDFDELIALYAIADVCLVTSLRDGMNLVAYEYVACQQ 393

Query: 269 ---GIPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSKKIMSDTGNRGR 325
              G+ +++   G    L D       ++V P ++  + +A+   +     MS+   + R
Sbjct: 394 DRKGVLILSEFAGAAQSLND-----GAILVNPWDIEEVAEAINEALT----MSEEERQKR 444

Query: 326 ERAVKHFSIVKE 337
            R  K F  + +
Sbjct: 445 HR--KLFKYISK 454


>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
           function prediction only].
          Length = 398

 Score = 36.9 bits (85), Expect = 0.009
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 22/70 (31%)

Query: 203 VGKTTLKHYLFKKNLQRRIYAN----------------------GLKKRILFIDEQSSIE 240
           VGKTTL   L K  L+  IY N                        +K  +F+DE  ++ 
Sbjct: 48  VGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP 107

Query: 241 DWYRALNIFV 250
           DW RAL    
Sbjct: 108 DWERALKYLY 117


>gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found in
           certain bacteria and Archaea..
          Length = 363

 Score = 35.7 bits (83), Expect = 0.021
 Identities = 51/243 (20%), Positives = 76/243 (31%), Gaps = 64/243 (26%)

Query: 118 DEVITTSQKSARFIE----RPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFG 173
           D +I  S     +++    R ST I +G D      +S + E  +   +      +   G
Sbjct: 145 DRLIADSPGIKEYLKEKYGRDSTYIPYGADH---VVSSEEDEILKKYGLEPGRYYL-LVG 200

Query: 174 RIRKLKGTDLFVD--CMINILPHHPGWTAVVVG----KTTLKHYLFKKNLQRRIYANGLK 227
           RI      D  ++     N      G   V+VG     T     L +K       A    
Sbjct: 201 RIVPENNIDDLIEAFSKSN-----SGKKLVIVGNADHNTPYGKLLKEK------AAAD-- 247

Query: 228 KRILFIDEQSSIEDW--YRALNIFVAPPLYEGFGLTP--LEAMASGIPVVASNTGVFSEL 283
            RI+F+      E     R   +F     +   G  P  LEAMA G PV+AS+       
Sbjct: 248 PRIIFVGPIYDQELLELLRYAALFYLHG-HSVGGTNPSLLEAMAYGCPVLASDN------ 300

Query: 284 LDPENAKAGVIVPPRNLHALEKAVLYFMNSKK-------------IMSDTGNRGRERAVK 330
                        P N   L    +YF                   +S      RER  +
Sbjct: 301 -------------PFNREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIRE 347

Query: 331 HFS 333
            ++
Sbjct: 348 KYT 350


>gnl|CDD|114419 pfam05693, Glycogen_syn, Glycogen synthase.  This family consists
           of the eukaryotic glycogen synthase proteins GYS1, GYS2
           and GYS3. Glycogen synthase (GS) is the enzyme
           responsible for the synthesis of -1,4-linked glucose
           chains in glycogen. It is the rate limiting enzyme in
           the synthesis of the polysaccharide, and its activity is
           highly regulated through phosphorylation at multiple
           sites and also by allosteric effectors, mainly glucose
           6-phosphate (G6P).
          Length = 633

 Score = 34.7 bits (80), Expect = 0.036
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 240 EDWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNT---GVFSELLDPENAKAGVIVP 296
           E++ R  ++ V P  YE +G TP E    GIP V +N    G F E    +    G+ + 
Sbjct: 464 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPKDYGIYIV 523

Query: 297 PRNLHALEKAV 307
            R   + +++V
Sbjct: 524 DRRFKSPDESV 534


>gnl|CDD|99997 cd04946, GT1_AmsK_like, This family is most closely related to the
           GT1 family of glycosyltransferases. AmsK is involved in
           the biosynthesis of amylovoran, which functions as a
           virulence factor. It functions as a glycosyl transferase
           which transfers galactose from UDP-galactose to a
           lipid-linked amylovoran-subunit precursor.  The members
           of this family are found mainly in bacteria and
           Archaea..
          Length = 407

 Score = 34.6 bits (80), Expect = 0.045
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 237 SSIEDWYR--ALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLD 285
           S +   Y+   +++FV     EG  ++ +EAM+ GIPV+A+N G   E++D
Sbjct: 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVD 350


>gnl|CDD|143621 cd07470, CYTH-like_mRNA_RTPase, CYTH-like mRNA triphosphatase
           (RTPase) component of the mRNA capping apparatus.  This
           subgroup includes fungal and protozoal RTPases. RTPase
           catalyzes the first step in the mRNA cap formation
           process, the removal of the gamma-phosphate of
           triphosphate terminated pre-mRNA. This activity is
           metal-dependent. The 5'-end of the resulting mRNA
           diphosphate is subsequently capped with GMP by RNA
           guanylytransferase, and then further modified by one or
           more methyltransferases. The mRNA cap-forming activity
           is an essential step in mRNA processing. The RTPases are
           not conserved among eukarya. The structure and mechanism
           of this fungal RTPase domain group is different from
           that of higher eukaryotes. This subgroup belongs to the
           CYTH/triphosphate tunnel metalloenzyme (TTM)-like
           superfamily, whose enzymes have a unique active site
           located within an eight-stranded beta barrel. The RTPase
           domain of the mimivirus RTPase-GTase fusion mRNA capping
           enzyme also belongs to this subgroup.
          Length = 243

 Score = 29.7 bits (67), Expect = 1.2
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 24/124 (19%)

Query: 79  EMLLGVMM--RDVLRMPLK-----LVFTSPSQR--------NHSRWTRYLISRMDEVITT 123
           E  LG ++  R   R+ L      ++      R         H R   +L    + V  +
Sbjct: 25  EAKLGTIIDKRTGERITLPVSTDIILADRARTRFESNVTESQHKRINEFLN---ELVEES 81

Query: 124 SQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKGTDL 183
           S+K      R      H    + F    N    +  +++S D K       IRK +  DL
Sbjct: 82  SKK------REKLKYEHSRTRDSFYELPNATGKKTKIRVSYDQKTGRVLACIRKRRLADL 135

Query: 184 FVDC 187
            +  
Sbjct: 136 DIHS 139


>gnl|CDD|36601 KOG1387, KOG1387, KOG1387, Glycosyltransferase [Cell
           wall/membrane/envelope biogenesis].
          Length = 465

 Score = 29.5 bits (66), Expect = 1.4
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 256 EGFGLTPLEAMASG-IPVVASNTGVFSELLDPENAKAGVIVPPRNLHALEKAVLYFMNSK 314
           E FG++ +E MA+G IP+V ++ G   +++ P + +    + P +    E  +     + 
Sbjct: 367 EHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNY 426

Query: 315 KIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLR 350
              +      R+   + F  +K   D      +LL 
Sbjct: 427 DERNMMRRNARKSLAR-FGELKFDKDWENPICKLLE 461


>gnl|CDD|107249 cd01536, PBP1_ABC_sugar_binding_like, Periplasmic sugar-binding
           domain of active transport systems that are members of
           the type I periplasmic binding protein (PBP1)
           superfamily.  Periplasmic sugar-binding domain of active
           transport systems that are members of the type I
           periplasmic binding protein (PBP1) superfamily. The
           members of this family function as the primary receptors
           for chemotaxis and transport of many sugar based solutes
           in bacteria and archaea. The sugar binding domain is
           also homologous to the ligand-binding domain of
           eukaryotic receptors such as glutamate receptor (GluR)
           and DNA-binding transcriptional repressors such as LacI
           and GalR. Moreover, this periplasmic binding domain,
           also known as Venus flytrap domain, undergoes transition
           from an open to a closed conformational state upon the
           binding of ligands such as lactose, ribose, fructose,
           xylose, arabinose, galactose/glucose, and other sugars.
           This family also includes the periplasmic binding domain
           of autoinducer-2 (AI-2) receptors such as LsrB and LuxP
           which are highly homologous to periplasmic
           pentose/hexose sugar-binding proteins.
          Length = 267

 Score = 29.2 bits (66), Expect = 1.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 248 IFVAPPLYEGFGLTPL--EAMASGIPVVASNTGVFSELLD----PENAKAGVIV 295
           I ++P   +   LTP   +A A+GIPVV  ++ +           +N +AG + 
Sbjct: 59  IIISPV--DSAALTPALKKANAAGIPVVTVDSDIDGGNRLAYVGTDNYEAGRLA 110


>gnl|CDD|30401 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
           structure and biogenesis].
          Length = 252

 Score = 28.7 bits (64), Expect = 2.3
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 248 IFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVP-PRNLHALEKA 306
           +FV  P  E   +   EA   GIPVVA        L+D      GV    P N  A+   
Sbjct: 160 LFVIDPRKEKIAV--KEANKLGIPVVA--------LVDTNCDPDGVDYVIPGNDDAIRSI 209

Query: 307 VLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340
            L +     +++     GR  A+       E  +
Sbjct: 210 ALIY----WLLARAILEGRGGALDEEEAAIEEDE 239


>gnl|CDD|38732 KOG3523, KOG3523, KOG3523, Putative guanine nucleotide exchange
           factor TIM [Signal transduction mechanisms].
          Length = 695

 Score = 28.8 bits (64), Expect = 2.5
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 31  QRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLLGVMMRDVL 90
           ++K      VF Y     +        L   K P G NS    + R +  LL  ++ +  
Sbjct: 515 KKKSEGSFQVFDYAPRSLLQVEKCEPEL---KLPGGANSL---SSRPHLFLL-TLLSNHQ 567

Query: 91  RMPLKLVFTSPSQRNHSRW 109
               +L+ ++ SQ +  RW
Sbjct: 568 GRQTELLLSAESQSDRQRW 586


>gnl|CDD|144190 pfam00501, AMP-binding, AMP-binding enzyme. 
          Length = 412

 Score = 28.8 bits (65), Expect = 2.5
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 18/82 (21%)

Query: 228 KRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLT------------PLEAMASGIPVVAS 275
           + +L   E    E   R    F    L  G+G T              E     I     
Sbjct: 250 RLVLSGGEPLPPELLRRLRERFGGVRLVNGYGPTETTVVVTANLPGDPEVKPGSIGRPLP 309

Query: 276 NTGVFSELLDPENAKAGVIVPP 297
              V  ++LD E    G  VPP
Sbjct: 310 GVEV--KVLDEE----GRPVPP 325


>gnl|CDD|107307 cd06312, PBP1_ABC_sugar_binding_like_4, Periplasmic sugar-binding
           domain of uncharacterized ABC-type transport systems.
           Periplasmic sugar-binding domain of uncharacterized
           ABC-type transport systems that share homology with a
           family of pentose/hexose sugar-binding proteins of the
           type I periplasmic binding protein superfamily, which
           consists of two domains connected by a three-stranded
           hinge. The substrate specificity of this group is not
           known, but it is predicted to be involved in the
           transport of sugar-containing molecules and chemotaxis.
          Length = 271

 Score = 28.8 bits (65), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 6/29 (20%)

Query: 264 EAMASGIPVVASNTGVFSELLDPENAKAG 292
            A+A+GIPV++ N G      DP+  + G
Sbjct: 77  RAVAAGIPVISFNAG------DPKYKELG 99


>gnl|CDD|38891 KOG3687, KOG3687, KOG3687, Tuberin - Rap/ran-GTPase-activating
           protein [Cell cycle control, cell division, chromosome
           partitioning, Signal transduction mechanisms].
          Length = 1697

 Score = 28.6 bits (63), Expect = 2.8
 Identities = 14/74 (18%), Positives = 27/74 (36%)

Query: 91  RMPLKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIMHGVDTERFRPT 150
           R+P +  F +   +            + E  +   +S    ER  + I  G   E   P 
Sbjct: 853 RLPFRKDFVNFITKGLRSNVLLSFDDIPEKDSFRARSTSLTERGKSRIQTGSADENSVPQ 912

Query: 151 SNKQEARRHLKISE 164
           ++      HL+++E
Sbjct: 913 ADDSLKNLHLELTE 926


>gnl|CDD|146640 pfam04109, APG9, Autophagy protein Apg9.  In yeast, 15 Apg proteins
           coordinate the formation of autophagosomes. Autophagy is
           a bulk degradation process induced by starvation in
           eukaryotic cells. Apg9 plays a direct role in the
           formation of the cytoplasm to vacuole targeting and
           autophagic vesicles, possibly serving as a marker for a
           specialized compartment essential for these
           vesicle-mediated alternative targeting pathways.
          Length = 365

 Score = 27.9 bits (63), Expect = 4.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 10/40 (25%)

Query: 213 FKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAP 252
           F K  QR+  A  L+KR L          +   LN+ ++P
Sbjct: 99  FLKESQRKQLAQELRKRFL----------FAGILNLLLSP 128


>gnl|CDD|37387 KOG2176, KOG2176, KOG2176, Exocyst complex, subunit SEC15
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 800

 Score = 27.2 bits (60), Expect = 7.0
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 299 NLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASD 340
           NL   E A  +F+     ++   NR  ER      ++     
Sbjct: 554 NLDYFEIAADFFLEFACHLNGIPNRDAERPSSSTKLLASRKL 595


>gnl|CDD|36726 KOG1513, KOG1513, KOG1513, Nuclear helicase MOP-3/SNO (DEAD-box
            superfamily) [Transcription, Signal transduction
            mechanisms].
          Length = 1300

 Score = 26.9 bits (59), Expect = 8.7
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 296  PPRNLHALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLL 349
             P++    E    +F + K+ M   G   RE      ++ K+ ++I K  +R+L
Sbjct: 988  VPQDYKVGE----FFRDMKQAMLGVGIGVREERNGVLTVEKDCNNISKFLNRIL 1037


>gnl|CDD|37749 KOG2538, KOG2538, KOG2538, Origin recognition complex, subunit 3
           [Replication, recombination and repair].
          Length = 578

 Score = 26.9 bits (59), Expect = 9.2
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 209 KHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDWYRALNIFVAPPLYEGFGLTPLEAMAS 268
              L +   +   +   L K +  I+     +     LN     P++E    + +  +  
Sbjct: 401 GLRLLRIFCETLDFEARLLKYVSLIEILV-SQSHLSGLNN-DIRPVHEVLRFSSISTLRQ 458

Query: 269 GIPVVASNTGVFSELLDPE 287
            +   A+ + + + L DP 
Sbjct: 459 MLKSGANRSALHTALNDPV 477


>gnl|CDD|30732 COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and
           metabolism].
          Length = 943

 Score = 26.9 bits (59), Expect = 9.3
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 29  PIQRKLGQRLVVFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLL 82
           P   ++   L+  GY     IP++G + + T W  P+ +  R      +  M L
Sbjct: 180 PDGSQVLGILLANGYSNGNEIPAVGHAHIDTAWLWPLDETERKASTSFSLVMNL 233


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,421,815
Number of extensions: 239355
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 64
Length of query: 352
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,210,882
Effective search space: 1082196674
Effective search space used: 1082196674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)