BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1
[Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC 60
           MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC
Sbjct: 1   MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC 60

Query: 61  WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV 120
           WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV
Sbjct: 61  WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV 120

Query: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG 180
           ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG
Sbjct: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG 180

Query: 181 TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE 240
           TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE
Sbjct: 181 TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE 240

Query: 241 DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL 300
           DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL
Sbjct: 241 DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL 300

Query: 301 HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352
           HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA
Sbjct: 301 HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 25.4 bits (54), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 97  VFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIE 132
           +F S +QR     + + I+ + EV+ TSQ  +RF E
Sbjct: 199 LFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRE 234


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 24.3 bits (51), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 8/43 (18%), Positives = 22/43 (51%)

Query: 200 AVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDW 242
            +++G T ++H L      + I+++G ++ +  +     + DW
Sbjct: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421


>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
           system [Candidatus Liberibacter asiaticus str. psy62]
          Length = 309

 Score = 23.9 bits (50), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 242 WYRALNIFVAPPLYEG 257
           WY +L  F+AP L EG
Sbjct: 83  WYPSLEKFIAPYLEEG 98


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 23.5 bits (49), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 83  GVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIM 139
           G++   V + P  +V     +++H      L+  MD  I T Q   +   R   +IM
Sbjct: 566 GILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622


>gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 294

 Score = 23.1 bits (48), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 273 VASNTGVFSELLDPE 287
           + ++TGV S +LDPE
Sbjct: 253 ITNDTGVMSAILDPE 267


>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 23.1 bits (48), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 40  VFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLL 82
            FG CL  ++  I  S+ + C+K+      R  +++  +E+LL
Sbjct: 555 AFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLL 597


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,374
Number of Sequences: 1233
Number of extensions: 9345
Number of successful extensions: 24
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 12
length of query: 352
length of database: 328,796
effective HSP length: 75
effective length of query: 277
effective length of database: 236,321
effective search space: 65460917
effective search space used: 65460917
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)