BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC 60 MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC Sbjct: 1 MDMNNIDVIAPNMKFRHTGVTSTVFGLCPIQRKLGQRLVVFGYCLPKNIPSIGISSLLTC 60 Query: 61 WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV 120 WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV Sbjct: 61 WKKPIGQNSRIWHARRNNEMLLGVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEV 120 Query: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG 180 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG Sbjct: 121 ITTSQKSARFIERPSTVIMHGVDTERFRPTSNKQEARRHLKISEDAKLIGCFGRIRKLKG 180 Query: 181 TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE 240 TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE Sbjct: 181 TDLFVDCMINILPHHPGWTAVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIE 240 Query: 241 DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL 300 DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL Sbjct: 241 DWYRALNIFVAPPLYEGFGLTPLEAMASGIPVVASNTGVFSELLDPENAKAGVIVPPRNL 300 Query: 301 HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352 HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA Sbjct: 301 HALEKAVLYFMNSKKIMSDTGNRGRERAVKHFSIVKEASDIGKVYDRLLRTA 352 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 97 VFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIE 132 +F S +QR + + I+ + EV+ TSQ +RF E Sbjct: 199 LFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRE 234 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust. Identities = 8/43 (18%), Positives = 22/43 (51%) Query: 200 AVVVGKTTLKHYLFKKNLQRRIYANGLKKRILFIDEQSSIEDW 242 +++G T ++H L + I+++G ++ + + + DW Sbjct: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 >gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport system [Candidatus Liberibacter asiaticus str. psy62] Length = 309 Score = 23.9 bits (50), Expect = 4.6, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 242 WYRALNIFVAPPLYEG 257 WY +L F+AP L EG Sbjct: 83 WYPSLEKFIAPYLEEG 98 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 83 GVMMRDVLRMPLKLVFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIERPSTVIM 139 G++ V + P +V +++H L+ MD I T Q + R +IM Sbjct: 566 GILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622 >gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 12/15 (80%) Query: 273 VASNTGVFSELLDPE 287 + ++TGV S +LDPE Sbjct: 253 ITNDTGVMSAILDPE 267 >gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.1 bits (48), Expect = 7.1, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 40 VFGYCLPKNIPSIGISSLLTCWKKPIGQNSRIWHARRNNEMLL 82 FG CL ++ I S+ + C+K+ R +++ +E+LL Sbjct: 555 AFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLL 597 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,374 Number of Sequences: 1233 Number of extensions: 9345 Number of successful extensions: 24 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 12 length of query: 352 length of database: 328,796 effective HSP length: 75 effective length of query: 277 effective length of database: 236,321 effective search space: 65460917 effective search space used: 65460917 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)