BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764475|ref|YP_003084341.1| hypothetical protein
CLIBASIA_03592 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764475|ref|YP_003084341.1| hypothetical protein CLIBASIA_03592 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score =  116 bits (290), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MVKSIPAIVPNTAILQENNVQISIPFPMPIVAMPAIILWLIITLLRGYCREYIIFLSRL 59
          MVKSIPAIVPNTAILQENNVQISIPFPMPIVAMPAIILWLIITLLRGYCREYIIFLSRL
Sbjct: 1  MVKSIPAIVPNTAILQENNVQISIPFPMPIVAMPAIILWLIITLLRGYCREYIIFLSRL 59


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 20.4 bits (41), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 9   VPNTAILQENNVQ 21
           VPNT I+  NN++
Sbjct: 88  VPNTCIIGYNNIR 100


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 20.0 bits (40), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 10  PNTAILQENNVQISIPFPMPIV 31
           PN  I  EN +     F +P+V
Sbjct: 301 PNPVIFLENEILYGSSFEVPMV 322


>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 20.0 bits (40), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 24  IPFPMPIVAMPAII 37
           +PFP  IV  P+I+
Sbjct: 290 LPFPFSIVDQPSIL 303


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.332    0.146    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,714
Number of Sequences: 1233
Number of extensions: 1033
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 59
length of database: 328,796
effective HSP length: 31
effective length of query: 28
effective length of database: 290,573
effective search space:  8136044
effective search space used:  8136044
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 31 (16.5 bits)