HHsearch alignment for GI: 255764476 and conserved domain: COG0643
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.84 E-value=1.2e-18 Score=145.54 Aligned_cols=167 Identities=20% Similarity=0.382 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCEEEECHHHHHH
Q ss_conf 99999999999999999998851498300023306999999999999999984--8968999956986089987899999
Q gi|255764476|r 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQ 689 (792)
Q Consensus 612 ~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~--~~i~l~~~~~~~~~~v~~D~~rL~Q 689 (792)
T Consensus 365 el~~~~~~l~~~~~~LQd~------vm~~RMv--P~~~vf~RfpR~VRdla~~lgK~V~L~ieG--~--~telDksIlE~ 432 (716)
T COG0643 365 ELDEALRQLSRLTTDLQDE------VMKIRMV--PFEQVFSRFPRMVRDLARKLGKQVELVIEG--E--DTELDKSILER 432 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHCE--EHHHHHHHCCHHHHHHHHHHCCEEEEEEEC--C--CEEEHHHHHHH
T ss_conf 9999999999999999999------9997000--399987444099999999869916999964--8--71342989988
Q ss_pred H---HHHHHHHHHHCC------------CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH-------------------
Q ss_conf 9---999988677538------------886889999998799899999978897897786-------------------
Q gi|255764476|r 690 I---FSKILSNAMDFS------------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC------------------- 735 (792)
Q Consensus 690 V---l~NLl~NAik~~------------~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~------------------- 735 (792)
T Consensus 433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred HCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 64669988850011058988999875989863699999837986999995689987999999999982998867752079
Q ss_pred -----HHHCCC-CEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf -----541488-3762689888856637999999999619869999788994399999734
Q gi|255764476|r 736 -----KSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 (792)
Q Consensus 736 -----~riF~~-F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~ 790 (792)
T Consensus 513 d~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 513 DEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred HHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf 9999988736998734111016577657899999999739989999627897699996687