HHsearch alignment for GI: 255764476 and conserved domain: COG3829
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].
Probab=98.74 E-value=2.8e-06 Score=60.84 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 89999999999999999999966663225899999999973577788998999
Q gi|255764476|r 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 (792)
Q Consensus 555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~ 607 (792)
T Consensus 419 LReR~eDI~---~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVREL 468 (560)
T COG3829 419 LRERKEDIP---LLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVREL 468 (560)
T ss_pred CCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 233820189---99999999999872887666899999999868999609999