HHsearch alignment for GI: 255764476 and conserved domain: COG3829

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].
Probab=98.74  E-value=2.8e-06  Score=60.84  Aligned_cols=50  Identities=14%  Similarity=0.054  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             89999999999999999999966663225899999999973577788998999
Q gi|255764476|r  555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS  607 (792)
Q Consensus       555 L~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~  607 (792)
T Consensus       419 LReR~eDI~---~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVREL  468 (560)
T COG3829         419 LRERKEDIP---LLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVREL  468 (560)
T ss_pred             CCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf             233820189---99999999999872887666899999999868999609999