HHsearch alignment for GI: 255764476 and conserved domain: COG3850
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=99.56 E-value=2.3e-11 Score=95.74 Aligned_cols=179 Identities=22% Similarity=0.314 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 89999999997357778899899999999999999999999999999885149830002330699999999999999998
Q gi|255764476|r 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 (792)
Q Consensus 584 Lt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~ 663 (792)
T Consensus 388 LS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~---~ 457 (574)
T COG3850 388 LSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFS---N 457 (574)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHH---H
T ss_conf 9999999999984278656687999999999999999999999999878-------76056763899999999997---3
Q ss_pred HCCCEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCC
Q ss_conf 489689999569860899878---99999999998867753888688999999879989999997889789778654148
Q gi|255764476|r 664 ENNIRIKVISDGKLGSFVADR---QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 (792)
Q Consensus 664 ~~~i~l~~~~~~~~~~v~~D~---~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~riF~ 740 (792)
T Consensus 458 qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~------ 528 (574)
T COG3850 458 QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQNDGQVTLTVEDNGVGIDEAA------ 528 (574)
T ss_pred CCCCEEEEECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCEEEEEEEECCCCCCCCC------
T ss_conf 46973887256--89889987899999999999999899852-6675899998659648999942883779756------
Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 837626898888566379999999996198699997889943999997347
Q gi|255764476|r 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 741 ~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 529 ---------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~~ 569 (574)
T COG3850 529 ---------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPE 569 (574)
T ss_pred ---------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCC
T ss_conf ---------7788-7236999999997257577764599981799995641