HHsearch alignment for GI: 255764476 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=100.00 E-value=4.2e-45 Score=327.00 Aligned_cols=327 Identities=21% Similarity=0.361 Sum_probs=257.1
Q ss_pred HHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99996203432899689848864058887828987894389838898877763025611468899874026544311568
Q gi|255764476|r 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516 (792)
Q Consensus 437 ~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 516 (792)
T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~-l~~l~~~gs~ll~ll---~q~~~~~~~~~~~------ 79 (363)
T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTR-LSELLPFGSLLLSLL---DQVLERGQPVTEY------ 79 (363)
T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCC-HHHHCCCCCHHHHHH---HHHHHHCCCCCCC------
T ss_conf 768745578569982778289608889999997788882487-788717772889999---8999835885101------
Q ss_pred EEEE-CCE--EEEEEEEEECC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997-250--38889999705--887663123206899998888999999999999999999996666322589999999
Q gi|255764476|r 517 TLEL-LSD--SVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 (792)
Q Consensus 517 ~~~~-~dG--~~~~~~~~pl~--dg~~l~~~~DIT~~k~~E~aL~e~~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a 591 (792)
T Consensus 80 ~v~l~~~g~~~~v~~~v~~v~~~~G~vlle~~~~~~~~ridre~~q~-----a~~~a~~~L~r~LAHEIKNPL~GiRGAA 154 (363)
T COG3852 80 EVTLVILGRSHIVDLTVAPVPEEPGSVLLEFHPRDMQRRLDREQTQH-----AQQRAVKGLVRGLAHEIKNPLGGIRGAA 154 (363)
T ss_pred EEEEEECCCCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 02442078652378998622689974899953257776766999988-----8888999999877887228531014499
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99735777889989999999999999999999999999988514983000233069999999999999999848968999
Q gi|255764476|r 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 (792)
Q Consensus 592 ~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~ 671 (792)
T Consensus 155 QLLe~~lp---d~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VLerV~~lv~~e~-~~~i~l~r 226 (363)
T COG3852 155 QLLERALP---DEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVLERVRALVEAEF-ADNVRLIR 226 (363)
T ss_pred HHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE
T ss_conf 99974589---867789999999999999999999875087----89855354319999999999985436-77558850
Q ss_pred EECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEE----------ECCEEEEEEEECCCCCCHHHHHH
Q ss_conf 95698608998789999999999886775388----86889999998----------79989999997889789778654
Q gi|255764476|r 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS----KGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMCKS 737 (792)
Q Consensus 672 ~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~----~gg~I~i~~~~----------~~~~v~i~V~D~G~GI~~e~~~r 737 (792)
T Consensus 227 dYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~ 306 (363)
T COG3852 227 DYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDH 306 (363)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHH
T ss_conf 27998853236989999999999999999716778778569997224258871674246631169861899998678643
Q ss_pred HCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 148837626898888566379999999996198699997889943999997347
Q gi|255764476|r 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 738 iF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 307 lF~P~Vs~----r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~ 355 (363)
T COG3852 307 LFYPMVSG----REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIR 355 (363)
T ss_pred CCCCCCCC----CCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEECC
T ss_conf 00230206----8898661489999989852978987426894-5899986335