HHsearch alignment for GI: 255764476 and conserved domain: COG3852

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=96.53  E-value=0.043  Score=32.21  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=53.0

Q ss_pred             HHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCC-----CCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-EE
Q ss_conf             99998516800589815992898525789873677-----8775661015853389678999986125787034578-88
Q gi|255764476|r  195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-ST  268 (792)
Q Consensus       195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~-----~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~  268 (792)
T Consensus         9 ~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----gs~ll~ll~q~~~~~~~~~~~~v~l   83 (363)
T COG3852           9 AGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----GSLLLSLLDQVLERGQPVTEYEVTL   83 (363)
T ss_pred             CHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCC-----CCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             17687455785699827782896088899999977888824877887177-----7288999989998358851010244


Q ss_pred             EECCEEEEEEEEEEECC--CCEE
Q ss_conf             65690789999976328--9529
Q gi|255764476|r  269 LEHGNNKSYKIVRVLNS--FGEA  289 (792)
Q Consensus       269 ~~~G~rr~~~v~~~~~~--~G~~  289 (792)
T Consensus        84 ~~~g~~~~v~~~v~~v~~~~G~v  106 (363)
T COG3852          84 VILGRSHIVDLTVAPVPEEPGSV  106 (363)
T ss_pred             EECCCCCEEEEEEEECCCCCCEE
T ss_conf             20786523789986226899748