HHsearch alignment for GI: 255764476 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=96.53 E-value=0.043 Score=32.21 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=53.0
Q ss_pred HHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCC-----CCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-EE
Q ss_conf 99998516800589815992898525789873677-----8775661015853389678999986125787034578-88
Q gi|255764476|r 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-ST 268 (792)
Q Consensus 195 lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~-----~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (792)
T Consensus 9 ~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----gs~ll~ll~q~~~~~~~~~~~~v~l 83 (363)
T COG3852 9 AGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----GSLLLSLLDQVLERGQPVTEYEVTL 83 (363)
T ss_pred CHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCC-----CCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 17687455785699827782896088899999977888824877887177-----7288999989998358851010244
Q ss_pred EECCEEEEEEEEEEECC--CCEE
Q ss_conf 65690789999976328--9529
Q gi|255764476|r 269 LEHGNNKSYKIVRVLNS--FGEA 289 (792)
Q Consensus 269 ~~~G~rr~~~v~~~~~~--~G~~ 289 (792)
T Consensus 84 ~~~g~~~~v~~~v~~v~~~~G~v 106 (363)
T COG3852 84 VILGRSHIVDLTVAPVPEEPGSV 106 (363)
T ss_pred EECCCCCEEEEEEEECCCCCCEE
T ss_conf 20786523789986226899748