HHsearch alignment for GI: 255764476 and conserved domain: PRK09835

>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00  E-value=0  Score=385.76  Aligned_cols=229  Identities=21%  Similarity=0.344  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999666632258999999999735777889989999999999999999999999999988514983
Q gi|255764476|r  559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM  638 (792)
Q Consensus       559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~  638 (792)
T Consensus       252 ~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~--~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~  329 (482)
T PRK09835        252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS--RSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL  329 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999988987189999999999985389--98699999999999999999999999999877435887


Q ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00023306999999999999999984896899995698608998789999999999886775388868899999987998
Q gi|255764476|r  639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
T Consensus       330 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~v~~d~~~l~~~l~NLl~NAikys~~g~~i~i~~~~~~~~  407 (482)
T PRK09835        330 IPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGD--PCQVAGDPLMLRRALSNLLSNALRYTPEGEAIVVRCQTVDHQ  407 (482)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf             666734569999999999999999868928998278--708998799999999999999998489998699999982998


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf             9999997889789778654148837626898--8885663799999999961986999978899439999973479
Q gi|255764476|r  719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE  792 (792)
Q Consensus       719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e  792 (792)
T Consensus       408 v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~lPr~~  482 (482)
T PRK09835        408 VQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRLE  482 (482)
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEEECCC
T ss_conf             9999996587889899987667975189888899994648999999999982998999963-99189999930789