HHsearch alignment for GI: 255764476 and conserved domain: PRK09835
>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00 E-value=0 Score=385.76 Aligned_cols=229 Identities=21% Similarity=0.344 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999666632258999999999735777889989999999999999999999999999988514983
Q gi|255764476|r 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 (792)
Q Consensus 559 ~eale~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG~~ 638 (792)
T Consensus 252 ~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~--~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~ 329 (482)
T PRK09835 252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS--RSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL 329 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999988987189999999999985389--98699999999999999999999999999877435887
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf 00023306999999999999999984896899995698608998789999999999886775388868899999987998
Q gi|255764476|r 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792)
Q Consensus 639 ~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792)
T Consensus 330 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~v~~d~~~l~~~l~NLl~NAikys~~g~~i~i~~~~~~~~ 407 (482)
T PRK09835 330 IPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGD--PCQVAGDPLMLRRALSNLLSNALRYTPEGEAIVVRCQTVDHQ 407 (482)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf 666734569999999999999999868928998278--708998799999999999999998489998699999982998
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCEECCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 9999997889789778654148837626898--8885663799999999961986999978899439999973479
Q gi|255764476|r 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 (792)
Q Consensus 719 v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~--~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~e 792 (792)
T Consensus 408 v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~lPr~~ 482 (482)
T PRK09835 408 VQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRLE 482 (482)
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEEECCC
T ss_conf 9999996587889899987667975189888899994648999999999982998999963-99189999930789