HHsearch alignment for GI: 255764476 and conserved domain: PRK09959
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional.
Probab=100.00 E-value=0 Score=548.92 Aligned_cols=364 Identities=21% Similarity=0.323 Sum_probs=283.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 59579999999999999999999962034328996898488640588878289878943898388988777630256114
Q gi|255764476|r 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 (792)
Q Consensus 417 ~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 496 (792)
T Consensus 559 r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~-~~~~---~~~---~~~ 631 (1197)
T PRK09959 559 RSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPL-ENSE---SPF---KDV 631 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCC-CCCC---CHH---HHH
T ss_conf 999999999999998899999998369987699825561224118889875231444213565-3222---215---677
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCEE----EEEE-EEEECCCC--C-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6889987402654431156899972503----8889-99970588--7-6631232068999988889999999999999
Q gi|255764476|r 497 WDLFAAIITSFDDERKSLQGTLELLSDS----VLEY-SIIPLPNA--Q-TMLTFVNVTDSVRAERALTEKNEALRKADEI 568 (792)
Q Consensus 497 ~~~~~~~i~~~~~~r~~~~~~~~~~dG~----~~~~-~~~pl~dg--~-~l~~~~DIT~~k~~E~aL~e~~eale~a~~l 568 (792)
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~A 711 (1197)
T PRK09959 632 FSNTHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVA 711 (1197)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77778998753101210001453057754236775310003764444010115464128999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECH
Q ss_conf 999999966663225899999999973577788998999-9999999999999999999999988514983000233069
Q gi|255764476|r 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 (792)
Q Consensus 569 k~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~-e~~~~I~~s~~~l~~li~diLdls~i~aG~~~l~~~~vdl 647 (792)
T Consensus 712 KS~FLA~MSHEIRTPLn~IiG~~eLL~~~---~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l 788 (1197)
T PRK09959 712 KSQFLATMSHEIRTPISSIMGFLELLSGS---GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDI 788 (1197)
T ss_pred HHHHHHHCCHHHCCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf 88888747353165689999999998468---999899999999999999999998888899989853886214520179
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--EEC---CEEEE
Q ss_conf 999999999999999848968999956986-089987899999999998867753888688999999--879---98999
Q gi|255764476|r 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDN---GDFIF 721 (792)
Q Consensus 648 ~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~-~~v~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~--~~~---~~v~i 721 (792)
T Consensus 789 ~~li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~ 867 (1197)
T PRK09959 789 PTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKM 867 (1197)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEE
T ss_conf 999999999999999967968999558987513526788999999999875374687978-9999998651798069999
Q ss_pred EEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 9997889789778654148837626898888566379999999996198699997889943999997347
Q gi|255764476|r 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 722 ~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iVe~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 868 ~V~DTGiGI~~~~~~~iF~pF~Q~s~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~ 937 (1197)
T PRK09959 868 TIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVE 937 (1197)
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 9997787889889975367862477887889848359999999998799289993599944999999756