HHsearch alignment for GI: 255764476 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00 E-value=0 Score=417.96 Aligned_cols=238 Identities=17% Similarity=0.302 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3206899998888999999999999999--99999666632258999999999735777889989999999999999999
Q gi|255764476|r 543 VNVTDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 (792)
Q Consensus 543 ~DIT~~k~~E~aL~e~~eale~a~~lk~--~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l 620 (792)
T Consensus 425 ~~~~~~~r~etER~~LE~qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l--~~~~~~~~~L~~I~~aa~Ra 502 (831)
T PRK13837 425 CHAIERRRLETERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKL--RRHSRARRHIDEIISSGDRA 502 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
T ss_conf 8799998879999999999999999999999998999987008999999999986206--99847789999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998851498300023306999999999999999984896899995698608998789999999999886775
Q gi|255764476|r 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 (792)
Q Consensus 621 ~~li~diLdls~i~aG~~~l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~D~~rL~QVl~NLl~NAik 700 (792)
T Consensus 503 ~~Lv~qLL~FSR~----~~~~~~~vdl~~lv~e~~~llr~~l-~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~d 577 (831)
T PRK13837 503 RLIIDQILTFGRK----GERRTKPFSLSELVTEIAPLLRVSL-PPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQ 577 (831)
T ss_pred HHHHHHHHHHHCC----CCCCCCEECHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf 9999999998589----9997717749999999999999875-8986999971898853888799999999999999999
Q ss_pred CCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 38886889999998---------------799899999978897897786541488376268988885663799999999
Q gi|255764476|r 701 FSSKGSTVILKAAR---------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 (792)
Q Consensus 701 ~~~~gg~I~i~~~~---------------~~~~v~i~V~D~G~GI~~e~~~riF~~F~~~~~~~~~~GtGLGLsiv~~iV 765 (792)
T Consensus 578 AM~~gG~l~I~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK~----~GTGLGLAvV~gIV 653 (831)
T PRK13837 578 AMDENGRVDIRLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTRA----RGTGLGLATVHGIV 653 (831)
T ss_pred HCCCCCEEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHH
T ss_conf 76799869999855533632321157789989899999867999898999660489867889----98874699999999
Q ss_pred HHCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 96198699997889943999997347
Q gi|255764476|r 766 NLHGGHVSISSSDEGVTTINCRIPSK 791 (792)
Q Consensus 766 e~hgG~I~v~S~~G~Gttf~v~lP~~ 791 (792)
T Consensus 654 ~~hgG~I~V~S~pG~GTtF~v~LP~~ 679 (831)
T PRK13837 654 SAHAGYIDVQSTVGRGTRFDVYLPPS 679 (831)
T ss_pred HHCCCEEEEECCCCCCEEEEEEEECC
T ss_conf 98698699972699971899983179