HHsearch alignment for GI: 255764476 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.08  E-value=2.8e-05  Score=54.04  Aligned_cols=264  Identities=14%  Similarity=0.139  Sum_probs=138.9

Q ss_pred             HHHHCCCCEEEECCCCCEEE--ECHHHHHHHCCCCCCHHHHHCC-CCCCCCHHHHHHHHHHCCCCC-----EEEEEE-E-
Q ss_conf             98516800589815992898--5257898736778775661015-853389678999986125787-----034578-8-
Q gi|255764476|r  198 LFDSLDFLVWHRDQAGDILW--ANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEK-----NFCETV-S-  267 (792)
Q Consensus       198 llda~P~~vw~~D~dGri~~--vN~A~~~~~e~~~~~~~~~i~~-~~~ll~~~~~~~~~~~~~~~~-----~~~~~~-~-  267 (792)
T Consensus         1 l~~~~~Dv~L~~d~~Gvvre~~~~~~--~~s---~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~   75 (453)
T TIGR02040         1 LLEAAADVTLLLDAEGVVREVALSND--ELS---AEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRF   75 (453)
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCC--CCC---HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             97764770355517870776442885--524---1413024588444413577899999999714688885777766541


Q ss_pred             EEECCEEEEEEEEEE--EC----CCCEEEEEEEHH---HHHH----HHHHH-----------HHHHHHHHHCCCCEEEEC
Q ss_conf             865690789999976--32----895299983045---8999----88788-----------999999843089599984
Q gi|255764476|r  268 TLEHGNNKSYKIVRV--LN----SFGEAGIAIDVS---KEIT----VNDQL-----------THTYEILHNLTVAIAIFD  323 (792)
Q Consensus       268 ~~~~G~rr~~~v~~~--~~----~~G~~Gia~DIT---Erk~----ae~aL-----------rr~~e~Ld~l~~~v~ifd  323 (792)
T Consensus        76 ~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~  155 (453)
T TIGR02040        76 VLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVD  155 (453)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             17999724403467616787888873588846524789999999999878888799986675444335411488679985


Q ss_pred             -CCCEEEEECHHHHHHHCCCHH---HHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCE
Q ss_conf             -898089853688855099978---9604998799999897547776646578899999987624676502688789818
Q gi|255764476|r  324 -QNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT  399 (792)
Q Consensus       324 -~~~rl~~~N~a~~~l~gl~~~---~l~~~p~~~~~ld~lr~~~~lpe~~d~~~w~~~~~~~~~~~~~~~~~w~l~DGr~  399 (792)
T Consensus       156 ~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~----------~-~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~  224 (453)
T TIGR02040       156 VSTGRILEANSAAAALLGAEGQRRDSLVGREFPQEL----------E-EREREELELLLREVRATGKAAEVRILLAESRK  224 (453)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCC----------C-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf             365347786799999850267750123111343146----------6-45436899999864301577871787457887


Q ss_pred             -EEEEEE-ECCCCCEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCH-HHH
Q ss_conf             -999973-56998689994--5957999999999999999999996203432899689848864058887828987-894
Q gi|255764476|r  400 -LHVIVT-SNPRGGTIWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-NRL  474 (792)
Q Consensus       400 -l~v~~~-~~p~Gg~~~~~--~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~-~~l  474 (792)
T Consensus       225 ~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~~s~~-sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v  303 (453)
T TIGR02040       225 ELLVVVSLFRQDSESLFLVRLSPAGASAAVGDVLSEN-SMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAV  303 (453)
T ss_pred             CEEEEEEEEECCCCCHHHEEECCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf             3178877640236641011303112446777766742-789999974298799977887328888999989871775453


Q ss_pred             CCCC
Q ss_conf             3898
Q gi|255764476|r  475 SPGT  478 (792)
Q Consensus       475 ~~~~  478 (792)
T Consensus       304 ~G~~  307 (453)
T TIGR02040       304 RGRT  307 (453)
T ss_pred             CCCC
T ss_conf             1332