HHsearch alignment for GI: 255764476 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.69 E-value=1.2e-15 Score=125.03 Aligned_cols=196 Identities=15% Similarity=0.202 Sum_probs=108.5
Q ss_pred HHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHH----------HHHH
Q ss_conf 999998430895999848980898536888550999789604998799999897547776646578----------8999
Q gi|255764476|r 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK----------TWKE 376 (792)
Q Consensus 307 r~~e~Ld~l~~~v~ifd~~~rl~~~N~a~~~l~gl~~~~l~~~p~~~~~ld~lr~~~~lpe~~d~~----------~w~~ 376 (792)
T Consensus 5 ~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNE--S~L----Sn~tTPpeV-YQaLWg~la~qkPW~G 77 (496)
T TIGR02938 5 LYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNE--SVL----SNRTTPPEV-YQALWGSLAEQKPWAG 77 (496)
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCC----CCCCCCHHH-HHHHHHHHHHCCCCCC
T ss_conf 688866228803643101456999956632155865621112554--012----685887179-9999988630589865
Q ss_pred HHHHHHHCCCCCCEEEECCCCCEE--EEEEEE--CCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999876246765026887898189--999735--69986899---94595799999999999999999999620343289
Q gi|255764476|r 377 NIFSVYKSSETHKDTWHLPNGQTL--HVIVTS--NPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 (792)
Q Consensus 377 ~~~~~~~~~~~~~~~w~l~DGr~l--~v~~~~--~p~Gg~~~---~~~DITE~~~le~~~~~l~~~q~~~ld~l~e~vav 449 (792)
T Consensus 78 ~LlNRr------------kDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vl 145 (496)
T TIGR02938 78 KLLNRR------------KDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVL 145 (496)
T ss_pred CEECCC------------CCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 100001------------16530022202020001468815873254543578899888976467899998786541000
Q ss_pred ECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEE---EE
Q ss_conf 968984886405888782898789438983889887776302561146889987402654431156899972503---88
Q gi|255764476|r 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526 (792)
Q Consensus 450 ~~~dgr~~~~N~a~~~l~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~dG~---~~ 526 (792)
T Consensus 146 lD~~gRv~LdN~~yk~La---~DL~v~ep-a~~~l~lLre~~--~e~~~~~~~q~~af----sn~E~rfD~ggGR~~RWl 215 (496)
T TIGR02938 146 LDEQGRVVLDNLEYKKLA---SDLKVEEP-AELLLKLLREEL--AEDLEELENQEKAF----SNKELRFDRGGGRSARWL 215 (496)
T ss_pred ECCCCCEEECCHHHHHHH---HHCCCCCC-HHHHHHHHHHHH--HHHHHHHCCCCCEE----CCCEEEEECCCCCCCCCE
T ss_conf 569986881677688787---42141441-799999850876--52786520211010----154035416887885010
Q ss_pred EEEEE
Q ss_conf 89999
Q gi|255764476|r 527 EYSII 531 (792)
Q Consensus 527 ~~~~~ 531 (792)
T Consensus 216 Sc~g~ 220 (496)
T TIGR02938 216 SCAGR 220 (496)
T ss_pred EECCC
T ss_conf 20232