HHsearch alignment for GI: 255764476 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=503.38 Aligned_cols=227 Identities=28% Similarity=0.537 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf 999999999999996666322589999999997357778899899999999999999999999999999885149--830
Q gi|255764476|r 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMK 639 (792)
Q Consensus 562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG--~~~ 639 (792)
T Consensus 498 AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~---~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~ 574 (1052)
T TIGR02956 498 AEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT---GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLS 574 (1052)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999748876887413511320113689999750589---98888999999998622789999846754677610874653
Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf 00233069999999999999999848968999956986089-98789999999999886775388868899999987998
Q gi|255764476|r 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 (792)
Q Consensus 640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~ 718 (792)
T Consensus 575 i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~Gs-v~l~~~l~~~~ 653 (1052)
T TIGR02956 575 ISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRGS-VVLRVSLNDDS 653 (1052)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCCE-EEEEEEECCCC
T ss_conf 45567788889999999999877403725674276542788753661344767654413200434526-99998855888
Q ss_pred ------EEEEEEECCCCCCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCCEEEEEEE
Q ss_conf ------99999978897897786541488376268-988885663799999999961986---99997889943999997
Q gi|255764476|r 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGH---VSISSSDEGVTTINCRI 788 (792)
Q Consensus 719 ------v~i~V~D~G~GI~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~---I~v~S~~G~Gttf~v~l 788 (792)
T Consensus 654 ~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~l 733 (1052)
T TIGR02956 654 SSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTL 733 (1052)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEC
T ss_conf 98663478888624779987999854331012101373137765068999999997088876501666458750221242
Q ss_pred ECCC
Q ss_conf 3479
Q gi|255764476|r 789 PSKE 792 (792)
Q Consensus 789 P~~e 792 (792)
T Consensus 734 pl~~ 737 (1052)
T TIGR02956 734 PLAR 737 (1052)
T ss_pred CCCC
T ss_conf 3133