HHsearch alignment for GI: 255764476 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00  E-value=0  Score=503.38  Aligned_cols=227  Identities=28%  Similarity=0.537  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf             999999999999996666322589999999997357778899899999999999999999999999999885149--830
Q gi|255764476|r  562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMK  639 (792)
Q Consensus       562 le~a~~lk~~F~~~vSHELrtPLt~I~G~a~lL~~~~~g~l~~~q~e~~~~I~~s~~~l~~li~diLdls~i~aG--~~~  639 (792)
T Consensus       498 AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~---~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~  574 (1052)
T TIGR02956       498 AEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT---GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLS  574 (1052)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999748876887413511320113689999750589---98888999999998622789999846754677610874653


Q ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE
Q ss_conf             00233069999999999999999848968999956986089-98789999999999886775388868899999987998
Q gi|255764476|r  640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD  718 (792)
Q Consensus       640 l~~~~vdl~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v-~~D~~rL~QVl~NLl~NAik~~~~gg~I~i~~~~~~~~  718 (792)
T Consensus       575 i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~Gs-v~l~~~l~~~~  653 (1052)
T TIGR02956       575 ISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRGS-VVLRVSLNDDS  653 (1052)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCCE-EEEEEEECCCC
T ss_conf             45567788889999999999877403725674276542788753661344767654413200434526-99998855888


Q ss_pred             ------EEEEEEECCCCCCHHHHHHHCCCCEECCC-CCCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCCEEEEEEE
Q ss_conf             ------99999978897897786541488376268-988885663799999999961986---99997889943999997
Q gi|255764476|r  719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGH---VSISSSDEGVTTINCRI  788 (792)
Q Consensus       719 ------v~i~V~D~G~GI~~e~~~riF~~F~~~~~-~~~~~GtGLGLsiv~~iVe~hgG~---I~v~S~~G~Gttf~v~l  788 (792)
T Consensus       654 ~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~l  733 (1052)
T TIGR02956       654 SSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTL  733 (1052)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEC
T ss_conf             98663478888624779987999854331012101373137765068999999997088876501666458750221242


Q ss_pred             ECCC
Q ss_conf             3479
Q gi|255764476|r  789 PSKE  792 (792)
Q Consensus       789 P~~e  792 (792)
T Consensus       734 pl~~  737 (1052)
T TIGR02956       734 PLAR  737 (1052)
T ss_pred             CCCC
T ss_conf             3133