HHsearch alignment for GI: 255764476 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=98.85  E-value=1.9e-08  Score=75.69  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCC-CCCCHHH----HHHHHHHCCCCC-EEEEE-E
Q ss_conf             999998516800589815992898525789873677877566101585-3389678----999986125787-03457-8
Q gi|255764476|r  194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KKRMISSSALEK-NFCET-V  266 (792)
Q Consensus       194 ~lr~llda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~-~ll~~~~----~~~~~~~~~~~~-~~~~~-~  266 (792)
T Consensus         2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~---G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   78 (112)
T pfam00989         2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELL---GLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS   78 (112)
T ss_pred             HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCC---CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             799999834246199989999999916533225---86366743752012457534399999999999819976887765


Q ss_pred             EEEECCEEEEEEEEEEECC--C---CEEEEEEEH
Q ss_conf             8865690789999976328--9---529998304
Q gi|255764476|r  267 STLEHGNNKSYKIVRVLNS--F---GEAGIAIDV  295 (792)
Q Consensus       267 ~~~~~G~rr~~~v~~~~~~--~---G~~Gia~DI  295 (792)
T Consensus        79 ~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI  112 (112)
T pfam00989        79 FRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI  112 (112)
T ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf             2879998999999999999199999999999849