HHsearch alignment for GI: 255764476 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.10  E-value=4e-10  Score=87.25  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             HHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCCHHHHHCCCCC-CCCHHH----HHHHHHHCCCCCEEEEEEEEEECCE
Q ss_conf             85168005898159928985257898736778775661015853-389678----9999861257870345788865690
Q gi|255764476|r  199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEI----KKRMISSSALEKNFCETVSTLEHGN  273 (792)
Q Consensus       199 lda~P~~vw~~D~dGri~~vN~A~~~~~e~~~~~~~~~i~~~~~-ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~G~  273 (792)
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g---~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   77 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFG---LPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFLEELLLNGE   77 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCC---CCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             99857353799499969999347466709---898998095121006803456677789999738955886643025885


Q ss_pred             EEEEEEEEEECCC------CEEEEEEEHHHHHH
Q ss_conf             7899999763289------52999830458999
Q gi|255764476|r  274 NKSYKIVRVLNSF------GEAGIAIDVSKEIT  300 (792)
Q Consensus       274 rr~~~v~~~~~~~------G~~Gia~DITErk~  300 (792)
T Consensus        78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq  110 (110)
T pfam08448        78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR  110 (110)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf             200043576689899999999999998833129