HHsearch alignment for GI: 255764476 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=97.29  E-value=0.00044  Score=45.84  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=18.3

Q ss_pred             HHHHCCCCEEEECCCCEEEEECHHHHHHHCCCHHHHCCC
Q ss_conf             996203432899689848864058887828987894389
Q gi|255764476|r  439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG  477 (792)
Q Consensus       439 ~ld~l~e~vav~~~dgr~~~~N~a~~~l~g~~~~~l~~~  477 (792)
T Consensus         6 ~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~   44 (67)
T smart00091        6 ILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK   44 (67)
T ss_pred             HHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC
T ss_conf             999655798588699948998859999889099999599