BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] (792 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254547827|gb|ACT57298.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 1627 bits (4214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 792/792 (100%), Positives = 792/792 (100%) Query: 1 MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60 MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS Sbjct: 1 MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60 Query: 61 FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120 FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK Sbjct: 61 FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120 Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE Sbjct: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180 Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES Sbjct: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240 Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT Sbjct: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300 Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR Sbjct: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360 Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT Sbjct: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420 Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI Sbjct: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML Sbjct: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG Sbjct: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT Sbjct: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI Sbjct: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG Sbjct: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 Query: 781 VTTINCRIPSKE 792 VTTINCRIPSKE Sbjct: 781 VTTINCRIPSKE 792 >gi|315122049|ref|YP_004062538.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495451|gb|ADR52050.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 792 Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/792 (78%), Positives = 709/792 (89%), Gaps = 2/792 (0%) Query: 1 MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60 M G+ATI IG + I +FSCK+ +FGTI GMLL TIIP+I+LI+QRN+LAK+VNE+YS Sbjct: 1 MTTGIATIDIGNEMGIWAIFSCKMLIFGTIVGMLLATIIPLIMLIKQRNNLAKQVNESYS 60 Query: 61 FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120 SEIC QLSKYH+LLTENNCL IVWDGKD TPEIIGQL++R+DIP DTD LSFENWLK Sbjct: 61 SFSEICYQLSKYHALLTENNCLIIVWDGKDGTPEIIGQLNRRMDIPLKDTDFLSFENWLK 120 Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180 FHHYI+LSK +KLR+EGQSFDL+AET+ND AIKIEGRVSGSCAFLR L+L+G+YSELAE Sbjct: 121 FHHYIQLSKEIKKLREEGQSFDLIAETKNDWAIKIEGRVSGSCAFLRFLTLNGVYSELAE 180 Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240 TTL+CKK+S H+SVFK+LFDSLDFLVW R+Q G++LWAN SYKKNTE QK I ++ Sbjct: 181 TTLECKKISGHMSVFKLLFDSLDFLVWQRNQRGELLWANNSYKKNTEETSP--QKEIFDN 238 Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300 KLF+EE+KKRMISS LE+NFC+TVS++E G +KSYKI++VLNSFGEAGIAIDVSKEIT Sbjct: 239 YKLFEEEVKKRMISSVELEENFCKTVSSIERGKHKSYKIIKVLNSFGEAGIAIDVSKEIT 298 Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360 NDQLTHTY+IL NLTVAIAIFDQNRYLQF+N+SF+ LW++D AFL +NPSNDE LEFLR Sbjct: 299 ANDQLTHTYDILQNLTVAIAIFDQNRYLQFYNQSFMALWQMDPAFLKSNPSNDEFLEFLR 358 Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420 SANKLPEQL+WKTWKE IFS YKSS HKDTWHLP GQTLHVIV +NP GGTIWMFENLT Sbjct: 359 SANKLPEQLDWKTWKEKIFSAYKSSGDHKDTWHLPTGQTLHVIVVTNPLGGTIWMFENLT 418 Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 VQVDLET+YNTLVKVQGE IDHLSEGVAVFGPDGRI+LSNP FRSLWK EE ++SPGTHI Sbjct: 419 VQVDLETRYNTLVKVQGEAIDHLSEGVAVFGPDGRIQLSNPVFRSLWKVEEEQVSPGTHI 478 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 RNIA+TCS+YYN+SDGWDLFAAIITSF+DERKSLQGTLELLSD+VLEYS+IPLPNAQTML Sbjct: 479 RNIASTCSKYYNKSDGWDLFAAIITSFEDERKSLQGTLELLSDAVLEYSVIPLPNAQTML 538 Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TFVNVTDSVRAERALTEKNEAL KADEIKN+FVQHVSYELRSPLTNIIGFTDLLKTSKLG Sbjct: 539 TFVNVTDSVRAERALTEKNEALHKADEIKNNFVQHVSYELRSPLTNIIGFTDLLKTSKLG 598 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN KQSQYVEYIS SS +LLNLVNDILDLATV+AGIMKLNYS I+L+DLLNEVKQSIA+ Sbjct: 599 GLNPKQSQYVEYISTSSELLLNLVNDILDLATVNAGIMKLNYSEIILSDLLNEVKQSIAS 658 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 KMHENNI ++++S LGS VADRQRLLQIF+KILSNA DFSSKGSTV+L+A RD DF+ Sbjct: 659 KMHENNITLEIVSRKALGSVVADRQRLLQIFAKILSNAADFSSKGSTVLLEADRDATDFV 718 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 FSV +NGS+IPEDM ++VFN FVS++H GQRRG+GLGLSIV+SF+NLHGG V ISS EG Sbjct: 719 FSVTSNGSNIPEDMRQNVFNGFVSDSHHGQRRGMGLGLSIVKSFLNLHGGSVFISSPHEG 778 Query: 781 VTTINCRIPSKE 792 T NCRIPSK+ Sbjct: 779 TTIFNCRIPSKK 790 >gi|222084231|ref|YP_002542757.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221721679|gb|ACM24835.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 824 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/782 (52%), Positives = 550/782 (70%), Gaps = 8/782 (1%) Query: 16 ICTLF-SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74 + LF S ++AVF I G++ ++ + ++RQR +L + E + LS+ ++S+Y + Sbjct: 38 VVRLFTSSEMAVFSVIIGVISAALLSTVWMVRQRGNLESESREIRTALSDANQRISQYQA 97 Query: 75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134 L+ + N I+WDG++ PE++GQL PQ D + L+F W+K +L KA +KL Sbjct: 98 LIADKNRRIIIWDGQNARPELLGQLPVETGAPQ-DNEFLAFGRWMKSWSAGELEKAIDKL 156 Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194 R GQSFD+V ET + ++ +GR+SG AF+R ++L+ + +ELAE ++ ++L IS Sbjct: 157 RGSGQSFDIVVETNREEILEAQGRISGGRAFVRFIALNNLRAELAELKIERERLMTSISA 216 Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254 F+ L D++D VW RD G + W N +Y + E + +A+ E R+ ++R+ + Sbjct: 217 FQNLLDAIDLPVWQRDADGQLTWVNHAYGE--AVEAVSPDEALREGREFLTTVARERIRA 274 Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----E 310 S+ E F + +ST+ HGN + ++ V G AG+AIDVS+ TV +L T E Sbjct: 275 SATPESPFHDKISTVVHGNRTFFDVIDVKLPNGSAGMAIDVSETETVRAELERTLKSHAE 334 Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 L +L +AIFD +R LQF+N++FV+LWE+D+AFL P N ELL+ LRSA KLPEQLN Sbjct: 335 TLDHLATPVAIFDGDRRLQFYNQAFVQLWELDIAFLEKKPDNSELLDRLRSAKKLPEQLN 394 Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430 WKTWK+ + SVY++ +T D WHLPNGQ L V T++P+GG W+FENLT QVDLET+YN Sbjct: 395 WKTWKDGVLSVYRALDTQSDLWHLPNGQILRVFATAHPQGGATWVFENLTEQVDLETRYN 454 Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490 TLV VQGETIDHLSEGVAVFGPDGRI+LSNPAFR LW E + PGTHI+ +A C+ Sbjct: 455 TLVVVQGETIDHLSEGVAVFGPDGRIRLSNPAFRILWNITEIQAKPGTHIQTLAEACAPS 514 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 Y+ DGW FA ITSFDDER S QGTLEL S+ VL+Y++IPLPNAQTMLTFVN TDSVR Sbjct: 515 YDRPDGWKRFAEQITSFDDERPSSQGTLELYSNLVLDYAVIPLPNAQTMLTFVNKTDSVR 574 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERALTEKNEAL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT +GSLN +Q++Y+ Sbjct: 575 AERALTEKNEALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGSLNDRQAEYI 634 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 ++IS SS +LL LVNDILDLATVDAGIM+LNYS I L+DLL+EV IA ++ E+ + ++ Sbjct: 635 DHISTSSAVLLTLVNDILDLATVDAGIMRLNYSEIALDDLLDEVSMQIADRLQESGVTLE 694 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + LGS VAD+QRL QI K+L+NA +F+ +GST+ LK RD DF+FSV + G I Sbjct: 695 ITVPAHLGSVVADQQRLKQILLKLLTNAANFAPEGSTIALKCGRDGTDFVFSVADKGPGI 754 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 E++ ++VFNRF S+ G+R G GLGLSIVESF++LH G VSI S TT+NCRIPS Sbjct: 755 SEEIMRTVFNRFASSGKGGKRSGAGLGLSIVESFVSLHDGQVSIESQPGKGTTVNCRIPS 814 Query: 791 KE 792 E Sbjct: 815 AE 816 >gi|190889670|ref|YP_001976212.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190694949|gb|ACE89034.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 861 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/759 (52%), Positives = 531/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK L KA ++LR E QSFD+V ET D ++ Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDEAQSFDMVVETIRDEVLEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD AG + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y E Q+AI E R++ ++R+ +++ E F +T+ST+ HGN Sbjct: 275 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AG+A+DVS V +L T E L +L +AIFD R LQF+ Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N++FV LWE+D+AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G LN +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++ E+ + +++ + LGS VAD QRL QI Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQIL 752 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+LSNA +FS +GS++ L+ R+ DF+FSV++ G I DM +VF+RF + A G+R Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851 >gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 861 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK L KA ++LR QSFD+V ET D ++ Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD AG + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y E Q+AI E R++ ++R+ +++ E F +T+ST+ HGN Sbjct: 275 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AG+A+DVS V +L T E L +L +AIFD R LQF+ Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N++FV LWE+D+AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G LN +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++ E+ + +++ + LGS VAD QRL QI Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLKQIL 752 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+LSNA +FS +GS++ L+ R+ DF+FSV++ G I DM +VF+RF + A G+R Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851 >gi|86355698|ref|YP_467590.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86279800|gb|ABC88863.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 860 Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 96 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 154 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK H +L KA ++LR QSFD+V ET D ++ Sbjct: 155 LGQLPPETGAPQ-DGEFLAFGLWLKSHSASELEKAIDRLRDGAQSFDMVVETIRDEILEA 213 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD G + Sbjct: 214 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 273 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y E Q+AI E R++ ++R+ + + E F +T+ST+ GN Sbjct: 274 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRAVTTPESPFHDTISTVVRGNRT 331 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AGIAIDVS V +L T E L +L +AIFD R LQF+ Sbjct: 332 FFDVVDVKVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 391 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N +FV LWE+D+AFL + P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 392 NHAFVALWELDIAFLESRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 451 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 452 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 511 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER Sbjct: 512 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 571 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 572 RSSQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 631 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G LN +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 632 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 691 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++HE+ + +++ + LGS +AD QRL QI Sbjct: 692 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIIADPQRLKQIL 751 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+L+NA +FS +G+++ L+ R+ DF+FSV++ G I DM +VF+RF + A G+R Sbjct: 752 LKLLANAANFSPEGASISLECHREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 811 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 812 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 850 >gi|222147058|ref|YP_002548015.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734048|gb|ACM35011.1| two component sensor kinase [Agrobacterium vitis S4] Length = 911 Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/779 (51%), Positives = 541/779 (69%), Gaps = 6/779 (0%) Query: 16 ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75 I T S ++ + G + T++ + L+RQRNS+ E S LS+ ++S+Y +L Sbjct: 125 IGTFSSTEMIGLSLVIGAISATLLSTLWLVRQRNSIEADSREIRSALSDANQRISRYQAL 184 Query: 76 LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135 + + N ++WDG + PE +GQL PQT+ D L+F W+K L A EKLR Sbjct: 185 IADKNRRIVIWDGGETKPEQLGQLPVETGAPQTEGDFLAFGRWMKPGSAADLDNAIEKLR 244 Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195 QSFDL+ ET D ++++GRVSG AF R ++L+ + +ELAE ++ +LS I F Sbjct: 245 FNAQSFDLIVETYRDEVLEVQGRVSGGRAFARFVALNNLRAELAELKIEKTRLSTAIETF 304 Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255 + L +S++ VW RD G ++W N +Y + E + +AI E R++ ++++ ++ Sbjct: 305 ESLLESVEQPVWQRDSEGRLVWVNQAY--SDAVEALTPDQAIQEGREILNTITREKIRAT 362 Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EI 311 + +TVST+ HGN + +V G G+AIDVS+E + ++L+ T E Sbjct: 363 LTPVSPYHDTVSTVVHGNRTFFSVVDTKTPKGSCGMAIDVSREEALREELSRTLKSHAET 422 Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371 L +L +AIFD R LQF+N++F +LW++DLAFL + P + ELL+ LRSA KLPEQL+W Sbjct: 423 LDHLATPVAIFDGERRLQFYNQAFQQLWDLDLAFLESRPDHAELLDRLRSAGKLPEQLSW 482 Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431 K WKEN SVY+S +T WHLPNGQTL VI +++P+GG W+FENLT QVDLET+YNT Sbjct: 483 KAWKENTLSVYRSIDTQTVLWHLPNGQTLRVIASAHPQGGATWVFENLTEQVDLETRYNT 542 Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491 LV+VQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW E + +PGTHIR I C+ Y Sbjct: 543 LVRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETQAAPGTHIRAIEEACALSY 602 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 + DGW F +ITSF+DER S QGT+EL+S VL+Y++IPLPNAQTMLTFVN+TDSVRA Sbjct: 603 EKPDGWRAFGKMITSFEDERPSSQGTIELMSGLVLDYAVIPLPNAQTMLTFVNITDSVRA 662 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ERAL EKNEALRKADE+KN FVQH+SYELRSPLTNIIGFTDLLK+S +G LN +Q +YV+ Sbjct: 663 ERALLEKNEALRKADELKNDFVQHISYELRSPLTNIIGFTDLLKSSAIGPLNERQGEYVD 722 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +IS SS +LL +VNDILDLATVDAGIM+L YS I L DLL++V + ++ E + +++ Sbjct: 723 HISTSSAVLLTIVNDILDLATVDAGIMRLTYSDIDLTDLLDDVSMQMTDRLQEGGVTLEI 782 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 ++ LG VAD+QRL QI KI++NA++FS +G+ V+LK R++ DF+FSV + G IP Sbjct: 783 LAPSHLGDIVADQQRLKQILIKIITNAVNFSPEGAKVVLKCWREDADFVFSVSDTGCGIP 842 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 EDM SVF RF SNA G+R G GLGLSIVESF++LH G VSI+S TT+ CRIPS Sbjct: 843 EDMLPSVFKRFSSNAKGGKRTGAGLGLSIVESFVHLHNGTVSINSVPNQGTTVLCRIPS 901 >gi|209551534|ref|YP_002283451.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537290|gb|ACI57225.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 861 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/759 (53%), Positives = 531/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLESESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK L KA ++LR QSFD+V ET D ++ Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDGAQSFDMVVETIRDEILEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD AG + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y + E Q+AI E R++ ++R+ ++ E F +T+ST+ HGN Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATVTPESPFHDTISTVVHGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AGIAIDVS V +L T E L +L +AIFD +R LQF+ Sbjct: 333 FFDVVDVRLPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N++FV LWE+D+AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKAFAELITSFDDER 572 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G LN +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++HE+ + +++ + LGS VAD QRL QI Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+LSNA +FS +G+++ L+ R+ DF+FSV + G I DM +VF+RF + A G+R Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVSDRGPGISPDMIATVFDRFATGAKSGKR 812 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851 >gi|241206973|ref|YP_002978069.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860863|gb|ACS58530.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 861 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/759 (52%), Positives = 531/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK +L KA ++LR E QSFD+V ET D ++ Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD G + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y + E Q+AI E R++ ++R+ +++ E F + +ST+ HGN Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDKISTVVHGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AGIAIDVS V +L T E L +L +AIFD R LQF+ Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 392 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N++FV LWE+D+AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQTDL 452 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y++ DGW FA +ITSFDDER Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDQPDGWKTFAELITSFDDER 572 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G L +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++HE+ + +++ + LGS VAD QRL QI Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+LSNA +FS +G+++ L+ R+ DF+FSV + G I DM +VF+RF + A G+R Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVGDRGPGISPDMIATVFDRFATGAKSGKR 812 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851 >gi|15887386|ref|NP_353067.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15154889|gb|AAK85852.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 881 Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/791 (49%), Positives = 536/791 (67%), Gaps = 6/791 (0%) Query: 4 GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63 MA G+ S + + GML T+ ++ L+RQR ++ + +E L+ Sbjct: 83 AMAQDGLVAKTSARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAESSEYRQALA 142 Query: 64 EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123 + +++KY +L+++ + ++WDG D+ PE +GQL +PQ D D L+F WLK Sbjct: 143 QSHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPAETGVPQADQDFLAFGRWLKPAS 202 Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183 +L K+ EKLR QSFDL ETQ I+++GRVSG AF R ++L+ + +ELAE + Sbjct: 203 AGQLEKSIEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFIALNNLRAELAELQV 262 Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243 + ++L +S F+ L DS++ VW R+ G++ W N +Y + ++A+ E R+L Sbjct: 263 ERERLLASVSTFQELLDSIEQPVWRRNGEGELTWVNHAYAHAVDARNA--EQAVQEKREL 320 Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303 ++++ +++ E + + +ST+ GN + +V + + G AGIAID ++ T+ + Sbjct: 321 LNTVTRQKIRAAATPESPYHDRISTVVSGNRSFFDVVDIKTAGGSAGIAIDATEAETIRE 380 Query: 304 QLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359 +L E L +L +AIFD + LQF+N++F LW DL L + P N ELL+ L Sbjct: 381 ELKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVLLESGPDNSELLDRL 440 Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 RSA KLPEQLNWK WKE SVY+S +T D WHLPNGQTL VI T++P+GG W+FENL Sbjct: 441 RSAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENL 500 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW + GTH Sbjct: 501 TEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTADEAETGTH 560 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 IR I C++ Y+ DGW F+ ITSFDDER S QGTLELLS VL+Y+IIPLP+AQTM Sbjct: 561 IRAIETACAQSYDGPDGWRAFSQFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQTM 620 Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT + Sbjct: 621 LTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGI 680 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G L +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS LN+LL++V IA Sbjct: 681 GQLTERQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSDNDLNELLDDVSVQIA 740 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ E+ I +++++ LGS VAD QRL QI K+L+NA++F+ +GS+V L R GDF Sbjct: 741 DRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEGDF 800 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +FSV + G IPEDM KSVF+RF + + G+R G GLGLSIVESF++LH G VSI S Sbjct: 801 VFSVADKGPGIPEDMLKSVFDRFATRGNGGRRTGAGLGLSIVESFVSLHHGTVSIDSRPG 860 Query: 780 GVTTINCRIPS 790 T + CRIPS Sbjct: 861 NGTIVTCRIPS 871 >gi|116249796|ref|YP_765634.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254444|emb|CAK05518.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 861 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK +L KA ++LR E QSFD+V ET D ++ Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD G + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y + E Q+AI E R++ ++R+ +++ E F + +ST+ GN Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDKISTVVRGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331 + +V V G AGIAIDVS V +L T E L +L +AIFD +R LQF+ Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392 Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391 N++FV LWE+D+AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452 Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 WHLPNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PDGRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACTPSYDRPDGWKTFAELITSFDDER 572 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 +S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FVQHVSYELRSPLTNIIGFTDLL+T +G L +Q++Y+++IS SS++LL LVNDILDLA Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 TVDAGIM+LNY+ I LNDLL++V IA ++HE+ + +++ + LGS VAD QRL QI Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 K+LSNA +FS +G+++ L+ R+ DF+F+V + G I DM +VF+RF + A G+R Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFAVSDRGPGISPDMIATVFDRFATGAKSGKR 812 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+SF++LH G V+I S TT+ CRIPS Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851 >gi|325291480|ref|YP_004277344.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059333|gb|ADY63024.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 860 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/799 (49%), Positives = 544/799 (68%), Gaps = 11/799 (1%) Query: 1 MMAGMATIGIGK-GIEICT---LFSC-KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKV 55 ++AG A + + + G+ T LFS + + GML T+ ++ L+RQR ++ + Sbjct: 54 VLAGSANVALAQDGLVAKTGARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAES 113 Query: 56 NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115 E L+E +++KY +L+++ + ++WDG D+ PE +GQL PQ D D L+F Sbjct: 114 GEYRKALAESHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPVETGAPQADHDFLAF 173 Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175 WLK +L K+ EKLR QSFDL ETQ I+++GRVSG AF R ++L+ + Sbjct: 174 GRWLKPSSASQLEKSLEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFVALNNLR 233 Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235 +ELAE ++ ++L +S F+ L DS++ VW R+ G+++W N +Y + ++ Sbjct: 234 AELAELQVERERLIASVSTFQELLDSIEQPVWRRNGEGELIWVNHAYAHAVDARDA--EQ 291 Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295 I E R+L ++++ +++ + + +ST+ GN + +V + + G AGIAID Sbjct: 292 TIQEKRELLNTVTRQKIRAAATPSSPYHDRISTVVSGNRTFFDVVDIKTAGGSAGIAIDA 351 Query: 296 SKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351 ++ T +++ E L +L +AIFD + LQF+N++F LW DL FL + P Sbjct: 352 TEAETTREEMKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVFLESGPD 411 Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411 N ELL+ LR+A KLPEQLNWK WKE SVY+S +T D WHLPNGQTL VI T++P+GG Sbjct: 412 NSELLDRLRTAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGG 471 Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471 W+FENLT QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW Sbjct: 472 ATWVFENLTEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTA 531 Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531 + GTHIR + A C++ Y++ DGW F+ ITSFDDER S QGTLELLS VL+Y+II Sbjct: 532 EQAETGTHIRAVEAACTQSYDKPDGWRSFSQFITSFDDERPSRQGTLELLSGLVLDYAII 591 Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 PLP+AQTMLTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFT Sbjct: 592 PLPDAQTMLTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFT 651 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 DLLKT +G L +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS LN+LL Sbjct: 652 DLLKTPGIGELTDRQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSENDLNELL 711 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++V IA ++ E+ I +++++ LGS VAD QRL QI K+L+NA++F+ +GS+V L Sbjct: 712 DDVSVQIADRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLS 771 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R GDF+FSV + G IPEDM K+VF+RF + + G+R G GLGLSIVESF++LH G Sbjct: 772 CQRSEGDFLFSVADKGPGIPEDMLKAVFDRFETRGNGGRRTGAGLGLSIVESFVSLHHGT 831 Query: 772 VSISSSDEGVTTINCRIPS 790 VSI S T + CRIPS Sbjct: 832 VSIDSRPGNGTIVTCRIPS 850 >gi|15963791|ref|NP_384144.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|15072966|emb|CAC41425.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 826 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/776 (50%), Positives = 520/776 (67%), Gaps = 9/776 (1%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 + ++ F + G++ +I I LIRQR ++ + E S LS+ ++S++ +L+ + N Sbjct: 48 TSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALIADKN 107 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 ++WDG E PE +GQL PQ D D L+F W+K +L KA E LR + QS Sbjct: 108 RRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 167 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 FDLV ETQ + ++ +GRVSG AF+R ++L+ + +ELAE L+ +L +S F+ L D Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 ++D W R G + W N +Y ET+ A+ E R+L ++R+ + S L+ Sbjct: 228 AVDLPAWQRGGDGRLQWVNAAYANAVETQSA--STAVAEERELLATTARERIRAVSTLQT 285 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 F + VST+ GN + +V G AGIAIDVS V ++L T E L +L Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 +AIFD N+ LQF+N++F LW++D+ FL P N E+L+ LR+ KLPEQLNWK WK Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKT 405 Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 + SVY++ +T D WHLPNGQTL V T+ P+GG W+FENLT +VDLET+YNTLV+VQ Sbjct: 406 SALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 GETIDHL+EGVAVFGPDGRI+LSNPAFR++W E PGTHIR I C Y++ DG Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 W FA IITSFDDER S +G LEL + +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT G LN +Q++YV++I+ S Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S++LL +VNDILDLATVDAGI++L S + L DL+++V Q + ++ E+ + ++ + Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG AD+QRL QIF K+L+NA +F+ GST+ LK R+ DF FSV + G IP+D+ Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +VFNRF S GQR G GLGLSIVESF++LH G+VSI S + T + CRIPS E Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818 >gi|307310979|ref|ZP_07590624.1| histidine kinase [Sinorhizobium meliloti BL225C] gi|307322010|ref|ZP_07601389.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306892348|gb|EFN23155.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306899659|gb|EFN30286.1| histidine kinase [Sinorhizobium meliloti BL225C] Length = 826 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/776 (50%), Positives = 520/776 (67%), Gaps = 9/776 (1%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 + ++ F + G++ +I I LIRQR ++ + E S LS+ ++S++ +L+ + N Sbjct: 48 TSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALIADKN 107 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 ++WDG E PE +GQL PQ D D L+F W+K +L KA E LR + QS Sbjct: 108 RRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 167 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 FDLV ETQ + ++ +GRVSG AF+R ++L+ + +ELAE L+ +L +S F+ L D Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 ++D W R G + W N +Y ET+ A+ E R+L ++R+ + S L+ Sbjct: 228 AVDLPAWQRGGDGRLEWVNAAYANAVETQSA--STAVAEERELLATTARERIRAVSTLQT 285 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 F + VST+ GN + +V G AGIAIDVS V ++L T E L +L Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 +AIFD N+ LQF+N++F LW++D+ FL P N E+L+ LR+ KLPEQLNWK WK Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKT 405 Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 + SVY++ +T D WHLPNGQTL V T+ P+GG W+FENLT +VDLET+YNTLV+VQ Sbjct: 406 SALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 GETIDHL+EGVAVFGPDGRI+LSNPAFR++W E PGTHIR I C Y++ DG Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 W FA IITSFDDER S +G LEL + +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT G LN +Q++YV++I+ S Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S++LL +VNDILDLATVDAGI++L S + L DL+++V Q + ++ E+ + ++ + Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG AD+QRL QIF K+L+NA +F+ GST+ LK R+ DF FSV + G IP+D+ Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +VFNRF S GQR G GLGLSIVESF++LH G+VSI S + T + CRIPS E Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818 >gi|227823897|ref|YP_002827870.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234] gi|227342899|gb|ACP27117.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234] Length = 827 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/776 (49%), Positives = 520/776 (67%), Gaps = 9/776 (1%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 + ++ F + G++ ++ I LIRQR ++ + + LS+ ++S++ +L+ + N Sbjct: 49 TSEVVTFSVLIGVISAAMLSAIWLIRQRGNIEAENRALRADLSDANQRISRFQALIADKN 108 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 +VWDG E PE +GQL PQ D D L+F W+K +L KA E LR + QS Sbjct: 109 RRIVVWDGLAERPEFLGQLPLETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 168 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 FDLV ETQ + ++ +GRVSG AF+R ++L+ + +ELAE L +L +S F+ L D Sbjct: 169 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLDRDQLHVSLSTFRTLLD 228 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 ++D VW R G + W N +Y + + A E R+L ++++ + S+ E Sbjct: 229 AIDLPVWQRGADGKLEWVNEAYAEAVDARSPA--AAASEGRELLATAAREKIRAVSSFET 286 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 F + +ST+ GN + +V G AGIAIDVS V ++L T E L +L Sbjct: 287 PFRDKLSTVVKGNRTFFDVVDARTHAGSAGIAIDVSGIEAVREELARTLKSHAETLDHLA 346 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 +AIFD N+ LQF+N++F LWE+D+ FL P N E+L+ LR+ NKLPEQLNWK WK Sbjct: 347 TPVAIFDGNQRLQFYNQAFQRLWELDMGFLERKPDNGEVLDRLRAGNKLPEQLNWKQWKA 406 Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 N SVY++ +T D WHLPNGQTL V T+ P+GG W+FENLT +VDLE +YNTLV+VQ Sbjct: 407 NALSVYQALDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLEIRYNTLVQVQ 466 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 GETIDHL+EGVAVFGPDGRI+LSNPAFR++W E PGTHIR + C Y++ DG Sbjct: 467 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISEVEAKPGTHIRAVEQACLSSYDQPDG 526 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 W FA IITSFDDER S +G LEL + +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT Sbjct: 527 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 586 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT G+LN +Q++YV++I+ S Sbjct: 587 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPAFGALNDRQAEYVDHIATS 646 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S +LL +VNDILDLATVDAGI++L+ S + L DLL++V Q +A ++ E+ +++ + Sbjct: 647 SALLLTIVNDILDLATVDAGIVELDMSEVNLLDLLDDVAQQMADRLTESGASLRIDAADN 706 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG VAD+QRL Q+F K+L+NA +F+ GS + LK R+ GDF+FSV + G IP+D+ Sbjct: 707 LGRIVADQQRLKQVFIKLLTNAANFAPDGSAIDLKCRREGGDFVFSVSDTGPGIPQDVLN 766 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +VFNRF S GQR G GLGLSIVESF++LH G VSI S + T + CRIPS E Sbjct: 767 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGTVSIRSKEGEGTEVTCRIPSAE 819 >gi|150398438|ref|YP_001328905.1| histidine kinase [Sinorhizobium medicae WSM419] gi|150029953|gb|ABR62070.1| histidine kinase [Sinorhizobium medicae WSM419] Length = 826 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/776 (49%), Positives = 515/776 (66%), Gaps = 9/776 (1%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 + ++ F + G++ +I I LIRQR ++ + + S LS+ +S++ +L+ + N Sbjct: 48 TPEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRDLRSSLSDANQHISRFQALIADKN 107 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 ++WDG + E +G L PQ D D L+F W+K H +L KA E LR + QS Sbjct: 108 RRIVIWDGLADRAEFLGHLPVETGAPQDDRDFLAFGRWVKPHSAGQLEKAIEALRAQAQS 167 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 FDLV ETQ + ++ +GRVSG AF+R ++L+ + +ELAE L+ +L +S F+ L D Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 ++D W R G + W N +Y K ET A+ E R+L + R+ + + L+ Sbjct: 228 AVDLPAWQRAGDGRLEWVNAAYAKAVETPSASL--AVAEERELLATAARDRIRAVATLQT 285 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 F + VST+ GN + +V G AGIAIDVS V ++L T E L +L Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 +AIFD N+ LQF+N++F LW++D+ FL P N E+ + LR KLPEQLNWK WK Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEMFDRLRDGGKLPEQLNWKQWKA 405 Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 N SVY++ +T D WHLPNGQTL V T+ P+GG W+FENLT +VDLET+YNTLV+VQ Sbjct: 406 NALSVYQALDTQTDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLETRYNTLVQVQ 465 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 GETIDHL+EGVAVFGPDGRI+LSNPAFR++W E PGTHIR I C Y++ DG Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGINETEAQPGTHIRAIEQACLASYDQQDG 525 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 W FA IITSFDDER S +G LEL + +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT G LN +Q++YV++I+ S Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S++LL +VNDILDLATVDAGI++L + + L DL+++V Q + ++ E+ + ++ + Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELAEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG AD+QRL QIF K+L+NA +F+ GST+ LK R+ DF FSV + G IP+D+ Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +VFNRF S GQR G GLGLSIVESF++LH G+VSI S + T + CRIPS + Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTEVTCRIPSAQ 818 >gi|218517057|ref|ZP_03513897.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 636 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/628 (56%), Positives = 454/628 (72%), Gaps = 6/628 (0%) Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226 R ++L+ + +ELAE ++ +L IS F+ + D++D W RD AG + W N +Y Sbjct: 1 RFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRLTWVNQAYGDAV 60 Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286 E Q+AI E R++ ++R+ +++ E F +T+ST+ HGN + +V V Sbjct: 61 EARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRTFFDVVDVTLPG 118 Query: 287 GEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342 G AG+A+DVS V +L T E L +L +AIFD R LQF+N++FV LWE+D Sbjct: 119 GSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFYNQAFVALWELD 178 Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402 +AFL P N ELLE LR+A KLP+QLNWK+WKE SVY++ +T D WHLPNGQTL V Sbjct: 179 IAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRV 238 Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPA Sbjct: 239 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPA 298 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522 FR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER+S QGTLEL S Sbjct: 299 FRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSGQGTLELFS 358 Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FVQHVSYELRS Sbjct: 359 GLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRS 418 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PLTNIIGFTDLL+T +G LN +Q++Y+++IS SS++LL LVNDILDLATVDAGIM+LNY Sbjct: 419 PLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 478 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + I LNDLL++V IA ++ E+ + +++ + LGS VAD QRL QI K+LSNA +FS Sbjct: 479 AEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 538 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +GS++ L+ R+ DF+FSV++ G I DM +VF+RF + A G+R G GLGLSIV+ Sbjct: 539 PEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKRGGAGLGLSIVD 598 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790 SF++LH G V+I S TT+ CRIPS Sbjct: 599 SFVSLHHGDVTIDSEPGKGTTVVCRIPS 626 >gi|163757504|ref|ZP_02164593.1| putative sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162285006|gb|EDQ35288.1| putative sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 869 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/775 (45%), Positives = 499/775 (64%), Gaps = 6/775 (0%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 S ++ F + G + +I I LIR+R + + + L++ QLS+Y SL+ + + Sbjct: 88 SLEVVNFAMVIGAISAAMISAIWLIRERAKIDAENVALRTALADSHAQLSRYQSLIVDRD 147 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 +VWDG E++G L PQ D L+F WL+ L+++ + LR + + Sbjct: 148 RQIVVWDGVGVPAEVLGNLSPATGAPQKPDDFLAFGRWLEPRSAASLNESIDLLRAQAER 207 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 FDL+ ET I+ +GRVSG AF+R ++L + +ELAE + +L + F+ L D Sbjct: 208 FDLIVETVRGHVIEAQGRVSGGRAFVRFVALSNVRAELAELKTERDRLLASVDTFQTLLD 267 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 +D W R +LW N +Y + EG I +L ++++ +++ E+ Sbjct: 268 VIDMPAWLRGSDAKLLWVNNAYVR--AVEGPDRSDTIERGMELLGTAAREKIRAAATPER 325 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 F + VST+ G+ + ++ V G AG+A+DVS E + ++L T E L +L Sbjct: 326 PFLDRVSTVIQGHRRFLEVADVKTPGGNAGLALDVSVEEDLREELRRTIQSHSETLDHLA 385 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376 +AIFD+++ LQFHN++F +LWE+D+ FLA P N E LE LR+ KLPE W+ WKE Sbjct: 386 TPVAIFDRDQRLQFHNQAFQQLWELDIPFLARRPDNGEFLERLRADGKLPEPHAWRDWKE 445 Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 + SVY+S ET WHLP+GQTL+V ++P+GG W+FENLT +VDLETKYNTL++VQ Sbjct: 446 QMLSVYRSVETTPHLWHLPDGQTLNVFANAHPQGGVTWVFENLTEKVDLETKYNTLLQVQ 505 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 GETIDHL+EGV VFGPDGRI+LSNP+FR+LW E ++ PGTHIR+I A C Y E DG Sbjct: 506 GETIDHLAEGVGVFGPDGRIRLSNPSFRALWGLTEEQVKPGTHIRDITAACEPSYREPDG 565 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 W LFA ITSF++ER+S G +EL++ +L+Y+++PLPN QTM+ FVNVTDSV AER LT Sbjct: 566 WKLFAGEITSFNEERRSRDGRIELVTGLILDYAVVPLPNGQTMVAFVNVTDSVDAERMLT 625 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E NEALRKAD +KN FV HVSYELRSPLTNIIGFTDLLKT +G L +Q++Y+++IS S Sbjct: 626 ETNEALRKADALKNDFVNHVSYELRSPLTNIIGFTDLLKTPGVGDLTERQAEYLDHISTS 685 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S++LL +VNDILDLATVDAGIM+L + + ++ LL+E IA EN ++++ S Sbjct: 686 SSVLLTIVNDILDLATVDAGIMQLEIAEVNIDTLLSEAADQIADWFKENGLKLETESANA 745 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + + D QRL QI K+L NA +F+ +GS V L A ++ +FSV ++G IPE K Sbjct: 746 PATMMGDYQRLKQILFKLLMNAANFAPEGSVVRLGCAMEDESIVFSVADSGPGIPESARK 805 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF RF ++ G+RRG GLGLSIV+SF++LH G VS+ S+ TTI CR P+K Sbjct: 806 DVFARFETHGQGGRRRGAGLGLSIVQSFVSLHNGTVSVEDSEGSGTTILCRFPTK 860 >gi|62290941|ref|YP_222734.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700852|ref|YP_415426.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189025153|ref|YP_001935921.1| sensory box histidine kinase, hypothetical [Brucella abortus S19] gi|254690232|ref|ZP_05153486.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 6 str. 870] gi|254731263|ref|ZP_05189841.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 4 str. 292] gi|256258485|ref|ZP_05464021.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 9 str. C68] gi|260546204|ref|ZP_05821944.1| histidine kinase [Brucella abortus NCTC 8038] gi|297247326|ref|ZP_06931044.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196] gi|62197073|gb|AAX75373.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82616953|emb|CAJ12057.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020725|gb|ACD73447.1| sensory box histidine kinase, hypothetical [Brucella abortus S19] gi|260096311|gb|EEW80187.1| histidine kinase [Brucella abortus NCTC 8038] gi|297174495|gb|EFH33842.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196] Length = 859 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|306842790|ref|ZP_07475431.1| histidine kinase [Brucella sp. BO2] gi|306287063|gb|EFM58571.1| histidine kinase [Brucella sp. BO2] Length = 850 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 57 GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 116 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 117 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 176 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 177 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 236 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + IGE R+LF + Sbjct: 237 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVIGEGRELFGAQ 294 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 295 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 354 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 355 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 414 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 415 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 474 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 475 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 534 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 535 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 592 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 593 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 652 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 653 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 712 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 713 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 772 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 773 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 832 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 833 TVICRFPSE 841 >gi|237816446|ref|ZP_04595439.1| sensory box histidine kinase [Brucella abortus str. 2308 A] gi|237788513|gb|EEP62728.1| sensory box histidine kinase [Brucella abortus str. 2308 A] Length = 870 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 77 GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 136 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 137 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 196 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 197 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 256 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 257 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 314 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 315 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 374 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 375 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 434 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 435 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 494 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 495 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 554 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 555 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 612 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 613 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 672 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 673 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 732 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 733 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 792 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 793 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 852 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 853 TVICRFPSE 861 >gi|260755773|ref|ZP_05868121.1| histidine kinase [Brucella abortus bv. 6 str. 870] gi|260758996|ref|ZP_05871344.1| histidine kinase [Brucella abortus bv. 4 str. 292] gi|260884797|ref|ZP_05896411.1| histidine kinase [Brucella abortus bv. 9 str. C68] gi|260669314|gb|EEX56254.1| histidine kinase [Brucella abortus bv. 4 str. 292] gi|260675881|gb|EEX62702.1| histidine kinase [Brucella abortus bv. 6 str. 870] gi|260874325|gb|EEX81394.1| histidine kinase [Brucella abortus bv. 9 str. C68] Length = 843 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 50 GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|254694720|ref|ZP_05156548.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 859 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 480/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR+R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|261215049|ref|ZP_05929330.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916656|gb|EEX83517.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 843 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 480/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR+R+ +A + NE S +++ Sbjct: 50 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|261221148|ref|ZP_05935429.1| histidine kinase [Brucella ceti B1/94] gi|261314866|ref|ZP_05954063.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|261316576|ref|ZP_05955773.1| histidine kinase [Brucella pinnipedialis B2/94] gi|261751241|ref|ZP_05994950.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|261755806|ref|ZP_05999515.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|265987648|ref|ZP_06100205.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|265992123|ref|ZP_06104680.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265993860|ref|ZP_06106417.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|265997108|ref|ZP_06109665.1| histidine kinase [Brucella ceti M490/95/1] gi|260919732|gb|EEX86385.1| histidine kinase [Brucella ceti B1/94] gi|261295799|gb|EEX99295.1| histidine kinase [Brucella pinnipedialis B2/94] gi|261303892|gb|EEY07389.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|261740994|gb|EEY28920.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|261745559|gb|EEY33485.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|262551576|gb|EEZ07566.1| histidine kinase [Brucella ceti M490/95/1] gi|262764841|gb|EEZ10762.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263003189|gb|EEZ15482.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|264659845|gb|EEZ30106.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|326410096|gb|ADZ67161.1| histidine kinase [Brucella melitensis M28] Length = 843 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 50 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|23502947|ref|NP_699074.1| sensory box histidine kinase [Brucella suis 1330] gi|161620011|ref|YP_001593898.1| histidine kinase [Brucella canis ATCC 23365] gi|225853527|ref|YP_002733760.1| histidine kinase [Brucella melitensis ATCC 23457] gi|254700729|ref|ZP_05162557.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|254705101|ref|ZP_05166929.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|254707383|ref|ZP_05169211.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|254709075|ref|ZP_05170886.1| histidine kinase [Brucella pinnipedialis B2/94] gi|256030600|ref|ZP_05444214.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|256045702|ref|ZP_05448580.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256112422|ref|ZP_05453343.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|256158596|ref|ZP_05456486.1| histidine kinase [Brucella ceti M490/95/1] gi|256254007|ref|ZP_05459543.1| histidine kinase [Brucella ceti B1/94] gi|256262989|ref|ZP_05465521.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256370497|ref|YP_003108008.1| sensory box histidine kinase, putative [Brucella microti CCM 4915] gi|260169506|ref|ZP_05756317.1| sensory box histidine kinase, putative [Brucella sp. F5/99] gi|260563004|ref|ZP_05833490.1| histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260567429|ref|ZP_05837899.1| histidine kinase [Brucella suis bv. 4 str. 40] gi|261759034|ref|ZP_06002743.1| histidine kinase [Brucella sp. F5/99] gi|23348982|gb|AAN30989.1| sensory box histidine kinase, putative [Brucella suis 1330] gi|161336822|gb|ABX63127.1| histidine kinase [Brucella canis ATCC 23365] gi|225641892|gb|ACO01806.1| histidine kinase [Brucella melitensis ATCC 23457] gi|256000660|gb|ACU49059.1| sensory box histidine kinase, putative [Brucella microti CCM 4915] gi|260153020|gb|EEW88112.1| histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156947|gb|EEW92027.1| histidine kinase [Brucella suis bv. 4 str. 40] gi|261739018|gb|EEY27014.1| histidine kinase [Brucella sp. F5/99] gi|263092862|gb|EEZ17037.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9] Length = 859 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|225626475|ref|ZP_03784514.1| sensory box histidine kinase [Brucella ceti str. Cudo] gi|294851326|ref|ZP_06791999.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026] gi|225618132|gb|EEH15175.1| sensory box histidine kinase [Brucella ceti str. Cudo] gi|294819915|gb|EFG36914.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026] Length = 870 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 77 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 136 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 137 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 196 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 197 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 256 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 257 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 314 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 315 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 374 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 375 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 434 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 435 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 494 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 495 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 554 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 555 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 612 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 613 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 672 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 673 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 732 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 733 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 792 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 793 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 852 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 853 TVICRFPSE 861 >gi|306843516|ref|ZP_07476117.1| histidine kinase [Brucella sp. BO1] gi|306276207|gb|EFM57907.1| histidine kinase [Brucella sp. BO1] Length = 859 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDMFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|265983095|ref|ZP_06095830.1| histidine kinase [Brucella sp. 83/13] gi|264661687|gb|EEZ31948.1| histidine kinase [Brucella sp. 83/13] Length = 843 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 50 GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|254718142|ref|ZP_05179953.1| histidine kinase [Brucella sp. 83/13] gi|306837656|ref|ZP_07470525.1| histidine kinase [Brucella sp. NF 2653] gi|306407214|gb|EFM63424.1| histidine kinase [Brucella sp. NF 2653] Length = 859 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|326539813|gb|ADZ88028.1| histidine kinase [Brucella melitensis M5-90] Length = 821 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 28 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 87 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 88 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 147 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 148 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 207 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 208 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 265 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 266 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 325 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 326 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 385 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 386 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 445 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 446 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 505 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 506 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 563 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 564 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 623 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 624 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 683 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 684 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 743 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 744 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 803 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 804 TVICRFPSE 812 >gi|254713498|ref|ZP_05175309.1| histidine kinase [Brucella ceti M644/93/1] gi|254716146|ref|ZP_05177957.1| histidine kinase [Brucella ceti M13/05/1] Length = 859 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 311/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|261217919|ref|ZP_05932200.1| histidine kinase [Brucella ceti M13/05/1] gi|261321231|ref|ZP_05960428.1| histidine kinase [Brucella ceti M644/93/1] gi|260923008|gb|EEX89576.1| histidine kinase [Brucella ceti M13/05/1] gi|261293921|gb|EEX97417.1| histidine kinase [Brucella ceti M644/93/1] Length = 843 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 311/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 50 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|261324039|ref|ZP_05963236.1| histidine kinase [Brucella neotomae 5K33] gi|261300019|gb|EEY03516.1| histidine kinase [Brucella neotomae 5K33] Length = 843 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 50 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + I E R+LF + Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANA--SQVISEGRELFGAQ 287 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 826 TVICRFPSE 834 >gi|256060062|ref|ZP_05450244.1| histidine kinase [Brucella neotomae 5K33] Length = 859 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|163844116|ref|YP_001628520.1| histidine kinase [Brucella suis ATCC 23445] gi|163674839|gb|ABY38950.1| histidine kinase [Brucella suis ATCC 23445] Length = 859 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 66 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y + E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 424 KLPEQPEWRKWKDSLLSAYCAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841 Query: 783 TINCRIPSK 791 T+ CR PS+ Sbjct: 842 TVICRFPSE 850 >gi|239833142|ref|ZP_04681471.1| histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239825409|gb|EEQ96977.1| histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 882 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 311/772 (40%), Positives = 469/772 (60%), Gaps = 13/772 (1%) Query: 27 FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86 F G++ ++ LIR+R+ +A + E S +++ + +LL + +VW Sbjct: 108 FSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFADLNLVAQRNEALLNLKDQRIVVW 167 Query: 87 DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146 DG E++G L PQ + L+F WL+ + L +A LR++ +SFDL E Sbjct: 168 DGHSTRAEVVGLLPDESAAPQDRSAFLAFGRWLRPQSVVALERAIGLLREQARSFDLTVE 227 Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206 T N + + GR SG A R LSL G+ +E A + ++ S I +F+ L D +D V Sbjct: 228 TVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPV 287 Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266 W RD G + W N +Y + + + I E R+LF + ++R+ E E + Sbjct: 288 WARDAGGRVEWVNAAYAQAVDMADA--SQVISEGRELFGAQARQRLERDRFAEPVLQEQL 345 Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIF 322 S + HG+ + + + V G G+ +D+++ V ++L T E L L+ A+AIF Sbjct: 346 SAVVHGDRRLFNVTDVSAETGSIGLGVDLTEVQAVREELNRTLKSHAETLDQLSTAVAIF 405 Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382 D LQF N++F +LW +D A+L + PSN +L+ LRS KLPEQ W+ WK+++ S Y Sbjct: 406 DPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSAY 465 Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442 ++ E + WHLP+ +T+ V+ +P+GG W FEN+T + +LE +YNTL+KVQGET+DH Sbjct: 466 RAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDH 525 Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDL 499 L+E VAVFG DGRI+LSNP+F LW + GTHI +IA CS E G WD Sbjct: 526 LAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIAKICS----ERGGNGLWDD 581 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F + +T F D+R G +EL ++L ++++PLP QTMLTF++VTD+VR ERAL EKN Sbjct: 582 FVSTVTGFLDKRDGRMGQVELDDGTILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKN 641 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSLN +Q +Y+++IS SS++ Sbjct: 642 EALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSLNERQIEYLDHISTSSSV 701 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL +VNDILDLATVDAGIM+L + + + ++ + +M +++I + + + Sbjct: 702 LLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAAARVGERMRDHDIGLDIDIADDVDV 761 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F AD R+ Q+ +LSNA +++ +GS++ L+ AR+ + +F+V ++G +P ++ +VF Sbjct: 762 FKADANRVRQVLFNLLSNATNYAPEGSSIRLQVAREGSEIVFAVHDDGPGMPGEVLDTVF 821 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF S + G+RRG GLGL+IV+SF+ LHGG V I + TT+ CR PS+ Sbjct: 822 KRFQSYPNGGRRRGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFPSE 873 >gi|148560078|ref|YP_001259900.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840] gi|148371335|gb|ABQ61314.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 837 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 311/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%) Query: 13 GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67 G I F + F I G + ++ LIR R+ +A + NE S +++ Sbjct: 44 GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 103 Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 + +LL + +VWDG + +++GQL PQ L+F WL+ L Sbjct: 104 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 163 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A LR++ ++FDL ET N + + GR SG A SL G+ +E A + ++ Sbjct: 164 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 223 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 L++ I + + L D ++ W RD G I W N++Y + + + I E R+LF + Sbjct: 224 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 281 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 ++R+ E E ++ + HG+ + + ++ V G G+ D+++ V D+L+ Sbjct: 282 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 341 Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 T E L L+ A+AIFD LQF N++FV+LW +D+A+L T PSN + + LR+ Sbjct: 342 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 401 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + Sbjct: 402 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 461 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW + GTHI I Sbjct: 462 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 521 Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A C++ DG W+ F + +T F D+R G +EL ++L ++++PLP QTMLTF Sbjct: 522 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 579 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSL Sbjct: 580 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 639 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L + + + ++ ++ ++ Sbjct: 640 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 699 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++L+ ARD D +F+ Sbjct: 700 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 759 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHGG V I + +E T Sbjct: 760 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 819 Query: 783 TINCRIPSK 791 T+ C PS+ Sbjct: 820 TVICHFPSE 828 >gi|17988310|ref|NP_540944.1| alkaline phosphatase synthesis sensor protein phoR [Brucella melitensis bv. 1 str. 16M] gi|17984083|gb|AAL53208.1| alkaline phosphatase synthesis sensor protein phor [Brucella melitensis bv. 1 str. 16M] Length = 768 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 306/753 (40%), Positives = 469/753 (62%), Gaps = 9/753 (1%) Query: 44 LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103 LIR R+ +A + NE S +++ + +LL + +VWDG + +++GQL Sbjct: 11 LIRDRSKIANENNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDAC 70 Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC 163 PQ L+F WL+ L +A LR++ ++FDL ET N + + GR SG Sbjct: 71 GAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGF 130 Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223 A SL G+ +E A + ++L++ I + + L D ++ W RD G I W N++Y Sbjct: 131 AVACFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYA 190 Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283 + + + I E R+LF + ++R+ E E ++ + HG+ + + ++ V Sbjct: 191 QAVDMANA--SQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVS 248 Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELW 339 G G+ D+++ V D+L+ T E L L+ A+AIFD LQF N++FV+LW Sbjct: 249 AESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLW 308 Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399 +D+A+L T PSN + + LR+ KLPEQ W+ WK+++ S Y++ E + WHLP+ +T Sbjct: 309 GLDVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRT 368 Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 + V+ +P+GG W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LS Sbjct: 369 MRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLS 428 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTL 518 NP+F +LW + GTHI IA C++ DG W+ F + +T F D+R G + Sbjct: 429 NPSFAALWSLPSEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQV 486 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 EL ++L ++++PLP QTMLTF++VTD+VR ERAL EKNEAL AD+IKN FVQHVSY Sbjct: 487 ELSDGAILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSY 546 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELRSPLTNIIGFT+LL+T GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM Sbjct: 547 ELRSPLTNIIGFTELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIM 606 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +L + + + ++ ++ ++ ++NI + V + F AD R+ Q+ +LSNA Sbjct: 607 ELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNA 666 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 ++++ +GS ++L+ ARD D +F+V ++G +P ++ +VF RF S + G+RRG GLGL Sbjct: 667 VNYAPEGSNIVLQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGL 726 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +IV+SF+ LHGG V I + +E TT+ CR PS+ Sbjct: 727 AIVKSFVELHGGRVEIDTGEERGTTVICRFPSE 759 >gi|153008157|ref|YP_001369372.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151560045|gb|ABS13543.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 858 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 310/773 (40%), Positives = 467/773 (60%), Gaps = 15/773 (1%) Query: 27 FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86 F G++ ++ LIR+R+ +A + E S +++ + +LL + +VW Sbjct: 84 FSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFADLNLVAQRNEALLNLKDQRIVVW 143 Query: 87 DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146 DG E++G L PQ + L+F WL+ + L +A LR++ +SFDL E Sbjct: 144 DGHSTRAEVVGLLPDDSAAPQDRSTFLAFGRWLRPQSVVALERAIGMLREQARSFDLTVE 203 Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206 T N + + GR SG A R LSL G+ +E A + ++ S I +F+ L D +D V Sbjct: 204 TVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPV 263 Query: 207 WHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265 W RD G + W N +Y + + +G + I E R+LF + ++R+ E E Sbjct: 264 WTRDAGGRVEWVNAAYAQAVDMADG---SQVISEGRELFGAQARQRLERDRFAEPVLQEQ 320 Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAI 321 ++ + HG+ + + + V G G+ D ++ V ++L T E L L+ A+AI Sbjct: 321 LTAVVHGDRRLFNVTDVSAETGSVGLGFDQTEVQAVREELNRTMKSHAETLDQLSTAVAI 380 Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 FD LQF N++F +LW +D A+L + PSN +L+ LRS KLPEQ W+ WK+++ S Sbjct: 381 FDPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSA 440 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 Y++ E + WHLP+ +T+ V+ +P+GG W FEN+T + +LE +YNTL+KVQGET+D Sbjct: 441 YRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLD 500 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WD 498 HL+E VAVFG DGRI+LSNP+F LW + GTHI +IA C E G WD Sbjct: 501 HLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIARIC----GERGGNGLWD 556 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 F + +T F D R G +EL ++L ++++PLP QTMLTF++VTD+VR ERAL EK Sbjct: 557 DFVSTVTGFLDTRDGRMGQVELDDGTILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEK 616 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 NEAL AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T GSLN +Q +Y+++IS SS+ Sbjct: 617 NEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSLNERQIEYLDHISTSSS 676 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 +LL +VNDILDLATVDAGIM+L + + + ++ + +M +++I + + + Sbjct: 677 VLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAASRVGERMRDHDIGLDIDIADDVD 736 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F AD R+ Q+ +LSNA +++ +GS++ L+ AR+ + +F+V ++G +P ++ +V Sbjct: 737 VFKADANRVRQVLFNLLSNATNYAPEGSSIQLQVAREGSEVVFAVHDDGPGMPGEVLDTV 796 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF S + G+RRG GLGL+IV+SF+ LHGG V I + TT+ CR PS+ Sbjct: 797 FKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFPSE 849 >gi|110635903|ref|YP_676111.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110286887|gb|ABG64946.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 843 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 324/786 (41%), Positives = 465/786 (59%), Gaps = 21/786 (2%) Query: 13 GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72 G+ I T+ +++VF AG+L + I LIR+R A + E + ++E+ LS+ Sbjct: 59 GLSISTIEVIQLSVF---AGVLGAAFLSAIWLIRERGRTASENTELKNRMAELSGALSRA 115 Query: 73 HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132 +LL + IVW G ++ P ++G L +P + L+F WL L +AT Sbjct: 116 EALLNLKDQRIIVWQG-NQRPIVLGDLSPESGVPHDRSTFLAFGRWLTPRSASALDRATA 174 Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL-SNH 191 LR+ G +FDLVAET+ +++GR S A +R LSL +E A L ++L ++H Sbjct: 175 ALREAGTAFDLVAETREGLLFEVQGRKSALHAIVRFLSLSAAQAENARLKLDHQRLQADH 234 Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251 S+ L ++L+ W RD+AG + W N +Y + E + A E R+L + Sbjct: 235 ESILG-LINALEMPFWLRDEAGRLKWVNSAYAQMVEAKDP--SAAAAEGRELLPSSARAA 291 Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310 + + F E +ST+ G+ + + + + G AGIA+D S D L YE Sbjct: 292 VAQHHQEQPVFREPLSTVVGGDRRLFAVTDYASQKGSAGIALDTSD----VDALRREYES 347 Query: 311 -------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 L LT A+AIFD ++ L+F+N++F +LW +D FL P LL+ LRS Sbjct: 348 TLRSHADTLDQLTTAVAIFDADQKLKFYNQAFQKLWALDAGFLDAGPEYALLLDRLRSDG 407 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KL EQ W+ WKE + S Y++ E + WHLP+G+T+ V+ T +GG W+FENLT ++ Sbjct: 408 KLAEQPEWRRWKEQLLSAYRAVEPQEHWWHLPDGRTIRVVATPQSKGGVTWVFENLTEKI 467 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 DLE++YN +VKVQ ET+D+L+EGVAVFGPDGR++LSNPAFR+LW E + P HI + Sbjct: 468 DLESRYNAVVKVQRETLDNLAEGVAVFGPDGRLRLSNPAFRTLWGIPEKLIGPDIHISIL 527 Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543 A C ES W F +T FDDER+ G EL++ + L Y+I+ LPN Q MLTFV Sbjct: 528 KAACDPVAMESP-WAEFVGAVTGFDDERRDKHGRTELINGAALHYAIVHLPNGQVMLTFV 586 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTDSV ERAL EKNEAL KAD +KN FVQHVSYELRSPLTNIIGFT+LL G LN Sbjct: 587 DVTDSVNVERALKEKNEALEKADRLKNDFVQHVSYELRSPLTNIIGFTELLGQETTGPLN 646 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV++I +SS++LL +VNDILDLATVDAGIM+L + + L+ +A ++ Sbjct: 647 PRQREYVDHIGSSSSLLLTIVNDILDLATVDAGIMELEIGEVEIRPLVKAATDLVADRLR 706 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E+ IR++V D SF AD R+ QI +LSNA +++ +G + L A+ F V Sbjct: 707 EHRIRLEVTVDAAPVSFHADENRIRQILYNLLSNAANYAPEGGKITLSASGTGNAIEFRV 766 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +NG + ++ ++F RF +A G+RRG GLGL+IV+SF+ LHGG V I ++ T Sbjct: 767 HDNGPGMSPEVLATIFKRFEPSAKGGRRRGAGLGLAIVKSFVELHGGTVDIDTAPGRGTA 826 Query: 784 INCRIP 789 + CR P Sbjct: 827 VTCRFP 832 >gi|319780208|ref|YP_004139684.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166096|gb|ADV09634.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 851 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 305/781 (39%), Positives = 453/781 (58%), Gaps = 10/781 (1%) Query: 13 GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72 G+ + + ++AVF + G L I I+LIR+R + + E S L++I L + Sbjct: 67 GLSVSAIDVMQLAVFVGVTGAAL---ISAIVLIRERARTSAENVELRSRLADINAALRRS 123 Query: 73 HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132 +LL + +VW +++ PE+IG L P+ L+F WL L A Sbjct: 124 EALLNLRDQRVVVWAAENKKPELIGTLPVESGAPEDRAAFLAFGRWLMPRSAAALEHAVA 183 Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192 LR++ + FDLV E+Q +++ GR S + +R LSL A ++ ++L+ Sbjct: 184 GLREKAKPFDLVIESQAGAPLEVHGRKSAAHVLVRFLSLSETQRSQARLKIENQRLAADH 243 Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252 L D+L+ W R + G + W N +Y E E ++ + + + Sbjct: 244 DTMIGLLDALNMPAWLRGEDGGLKWVNRAYADAVEAENAEAAVRE--KKEFLGGQARDAI 301 Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309 + F +++ST+ G+ + + + S G AG+A D S V + T Sbjct: 302 AAQHRTHPVFEQSLSTVIEGDRRVFAVTDFAGSDGSAGLACDTSAIEAVRGEYERTVRSH 361 Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368 + L L A+AIFD + L+F N++F +LW ++ FL + P N LL+ LRS K+ EQ Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLEAGFLHSAPDNALLLDRLRSEGKIAEQ 421 Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428 W+ WKE + Y++ E+ + WHLP+G+T+ V+ P+GG W+FENLT ++DLE++ Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481 Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW P H+ I C Sbjct: 482 YQTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPSVHVSTIRDLCD 541 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R +S W F A +T FDDER+ G EL + +VL Y++IPLPN Q M+TFV+VTDS Sbjct: 542 RQAADSP-WPGFVAAVTGFDDERRDRHGQTELNNGNVLSYAMIPLPNGQVMMTFVDVTDS 600 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ERAL +KNEAL+K+D++KN FVQHVSYELRSPLTNIIGFT+LL G L KQ + Sbjct: 601 VHVERALKDKNEALQKSDQLKNEFVQHVSYELRSPLTNIIGFTELLSQPTTGPLTQKQRE 660 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YVE++S+SS +LL +VNDILDLATVDAGIM+L+ S + ++ + + +A ++ E++IR Sbjct: 661 YVEHVSSSSAVLLTIVNDILDLATVDAGIMQLDISEVQVDRTIAAAAELVADRLEEHSIR 720 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++V + +F D R+ QI +LSNA +++ + ST+ L FSV ++G Sbjct: 721 LEVEAASAPKTFHGDEVRVRQILYNLLSNAANYAPEASTIRLTCRHLADGVEFSVHDDGP 780 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +P D+ SVF RF A+ G+RRG GLGLSIV+SF+ LHGG V I + + TT+ C Sbjct: 781 GMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGSVRIETGKDKGTTVICTF 840 Query: 789 P 789 P Sbjct: 841 P 841 >gi|260463220|ref|ZP_05811422.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031070|gb|EEW32344.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 851 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 305/782 (39%), Positives = 465/782 (59%), Gaps = 12/782 (1%) Query: 13 GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72 G+ I T+ ++AVF + G T + I+LIR+R + + E S ++++ L + Sbjct: 67 GLSISTIEVMQLAVFVGVTG---TAFLSAIVLIRERARTSAENVELRSRVADVNAALRRS 123 Query: 73 HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132 +LL + IVW +++ PE++G L P+ L+F WL L A Sbjct: 124 EALLNLRDQRVIVWASENKKPELVGILPVESGAPEERAAFLAFGRWLMPRSAAALEHAIA 183 Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192 LR++ + FDLV E+Q +++ GR S + +R +SL A ++ +L+ Sbjct: 184 ALREKARPFDLVIESQAGAPLEVHGRKSAAHVLVRFVSLSETQRSQARLKIENHRLAADH 243 Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252 L ++L W RD+ G + W N +Y E + A+ ++++ + ++ + Sbjct: 244 DTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEA--ESAEAAVRDAKEFLGGQAREAI 301 Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309 + L F +++ST+ G+ + + + ++ G AG+A D S ++ + T Sbjct: 302 EAQHKLHPVFEQSLSTVIEGDRRVFAVTDFASADGSAGLACDTSAIESIRGEYERTVRSH 361 Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368 + L L A+AIFD + L+F N++F +LW +D FL + P N LL+ LRS K+ EQ Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQ 421 Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428 W+ WKE + Y++ E+ + WHLP+G+T+ V+ P+GG W+FENLT ++DLE++ Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481 Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 Y T V+VQGET+D+L+EGVAVFGPDG+++LSNPAF +LW + P H+ I C Sbjct: 482 YRTAVRVQGETLDNLAEGVAVFGPDGKLRLSNPAFATLWGLDAEATKPNVHVSTIRDLCD 541 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R +S W F A IT FDDER+ G EL + +VL Y++IPLPN Q M+TFV+VTD Sbjct: 542 RQAVDSP-WPSFVAAITGFDDERRDRHGQTELNNGTVLRYAMIPLPNGQVMMTFVDVTDG 600 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 VR ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL G L KQ + Sbjct: 601 VRVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPLTQKQRE 660 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YVE++ +SS++LL +VNDILDLATVDAGIM+L+ S + ++ + + +A ++ E++IR Sbjct: 661 YVEHVGSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRLQEHSIR 720 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 ++V + +F D R+ QI +LSNA +++ + ST+ L A R D + FSV ++G Sbjct: 721 LEVDAKAAPKTFHGDETRIRQILYNLLSNAANYAPEASTIRL-ACRHLADGVEFSVHDDG 779 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +P D+ SVF RF A+ G+RRG GLGLSIV+SF+ LHGG V I + + TT+ C Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGGVRIETGKDKGTTVICT 839 Query: 788 IP 789 P Sbjct: 840 FP 841 >gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 812 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/772 (36%), Positives = 448/772 (58%), Gaps = 6/772 (0%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 + + G GM I + +RQR + + SE+ ++ + S+L + Sbjct: 33 MMLLGAFGGMCAFAITASVAYLRQRRAAGALCEHLHREKSELKLRVDRLESMLNSDEQRI 92 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 +VW G P++ G L ++ +P+ LL+F +WL L + + L G++F Sbjct: 93 VVWTGSGNAPQVWGVLPEQSGVPRATNQLLAFGSWLSAKCASDLERRLDALFSTGETFTT 152 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 T+ ++ GR +G LR+ + G AE + + K+S + + L D+L Sbjct: 153 TLTTRVGTFVEAIGRTTGGAVVLRLRDMTGERQIQAEISARNAKISGELHMLHSLLDALP 212 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 W RD G ++W N +Y T + + AI E + + + F Sbjct: 213 SPAWQRDAEGKLIWVNQAYA--TAIDAPDQKAAIKEGDDFLDSAARDAAGKNRNEDGCFT 270 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAI 319 + + G + +++ V + G AG+AID+S+ V +L+ E L L A+ Sbjct: 271 ARIPMVAAGERRVFEVTDVAANVGGAGVAIDISELDQVRRELSRAEEFHGRTLDQLVTAV 330 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AI+ +R LQFHN +F +LWE++ FL ++P + +L+ LR+A KLPEQ +++ W+ + Sbjct: 331 AIYGGDRKLQFHNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQADYRVWRNTML 390 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y+S ET + WHLP+G+TL V+ + +P+GG I+++EN+T ++DLE++YN L++VQGET Sbjct: 391 ESYQSVETKEHWWHLPDGRTLRVVASPHPQGGVIYIYENVTERLDLESRYNALIRVQGET 450 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++LSE VAVFG DGR++L NPAF +W EE+RLS H+ + +TC+ E + WD Sbjct: 451 LENLSEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAEQEAWDR 510 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 +A +TS + R + +E +VL+Y+ +PLP+ T++TFV+VTDSV ERAL EKN Sbjct: 511 LSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALVEKN 570 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL +ADE+KN+F+QHVSYELRSPLTNIIGF LL K G L+ KQ +Y +YI +SS+ Sbjct: 571 EALEQADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLSEKQGEYADYIRSSSSA 630 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++NDILDLAT+DAGIM+L S + + + + + ++ E+ I ++ +GS Sbjct: 631 LLAIINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDVPDNIGS 690 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 VAD +RL Q+ ++SNA+ +S + V + R + F VK++G IP D+ VF Sbjct: 691 MVADEKRLRQVLYNLISNAVRYSEEEGVVDVVCNRKDEAVEFVVKDHGCGIPADILTQVF 750 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 NRFV + +R+G GLGLSIV+SF+ LHGG V I+S + TT+ C P+K Sbjct: 751 NRFVGHNAGARRQGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFPAK 802 >gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] Length = 814 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 277/770 (35%), Positives = 442/770 (57%), Gaps = 6/770 (0%) Query: 26 VFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV 85 +FG + GM + + L+R R + S++ ++ + ++L + IV Sbjct: 37 LFGALGGMCAFAVTASVALVRHRKQSGLLTDALEKEKSDLKFRVDRLEAMLNTDEQRVIV 96 Query: 86 WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA 145 W G P+I G L ++ +P+ LL+F +WL L + + L + G++F Sbjct: 97 WTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDMLFRTGEAFTTTL 156 Query: 146 ETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205 +T+ ++ GR +G LR+ L G AE + K+S + + L D++ Sbjct: 157 KTRTGTYVEALGRTTGGAVVLRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAP 216 Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265 W RD G+++WAN +Y + + A+ E + M + F Sbjct: 217 AWQRDAEGNLIWANQAYAEAVDMTDADL--AVKEGASFLDAAARTAMAVQRTEDGCFNAR 274 Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAIAI 321 + + G + +++ V + G AGIA+D+S+ +L E L L A+AI Sbjct: 275 IPIVASGERRVFEVTDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAI 334 Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 + +R LQF+N +F +LW++D AFL + P + +L+ LR+A K+PEQ +++ W+ + Sbjct: 335 YSADRKLQFYNAAFRQLWDLDPAFLESRPEDSAVLDALRAARKIPEQADYRVWRNKMMES 394 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 Y+S E + WHLP+G+TL VI +P+GG +++EN+T Q+DLE++YN L +VQGET+D Sbjct: 395 YQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESRYNALTRVQGETLD 454 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 +LSE VAVFG DGR++L NPAF +W EE++L+ H++ + + C+ E D W+ A Sbjct: 455 NLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTELPHVKEVVSACTLSETERDAWEQLA 514 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 +T D R LE + V++Y+ +PLP+ T++TFV+VTDSV ERAL EKNEA Sbjct: 515 GNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDGGTLVTFVDVTDSVNVERALLEKNEA 574 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +AD+IKN+F+QHVSYELRSPLTNIIGF LL K G L+ KQS+Y +YI +SS+ LL Sbjct: 575 LEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSDKQSEYADYIQSSSSALL 634 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDLAT+DAGIM+L+ + + + + + ++ E I ++ G +G V Sbjct: 635 AIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLRTHVPGDIGMMV 694 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +RL Q+ ++SNA+ +S V + +R++ F V+++G IP ++ VFNR Sbjct: 695 ADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSREDDKVTFVVQDHGYGIPAEILTQVFNR 754 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV + +R+G GLGL+IV+SF+ LHGG V I S++ TT+ C P++ Sbjct: 755 FVGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCVFPAR 804 >gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] Length = 817 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 285/799 (35%), Positives = 454/799 (56%), Gaps = 12/799 (1%) Query: 1 MMAGMATIGIGKGIEICTLFSC------KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54 + A + G + ++I S K+ AG+ L + ++L+R R + + Sbjct: 9 VFALLGAAGFSQAMDILPALSGSSVDAFKVVWVAATAGIALYAVAASVVLVRIRRNDSLS 68 Query: 55 VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114 + + ++ ++ + SLL + L +VWDG+ + P + G L + +++ + L+ Sbjct: 69 ILQLRQDRADAMARIDRLESLLETEDSLLLVWDGEAKHPGVAGHLPENLELSGGLSQLVE 128 Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174 FE WL L E LR G+ F L T + ++ G +G A LR+ L G Sbjct: 129 FETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLEASGHTAGGLAVLRLRDLTGD 188 Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234 A + + K+L IS L D+L W RD G ++W N +Y E E + Sbjct: 189 RQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQLVWVNTAYVDAVEAEST--R 246 Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294 + + +L + + + ++ + + + + G + +++ V + G AG+A D Sbjct: 247 TVVDDQIELLEAKGRNKLNMMRQTDGVYHSPMPVVAAGERRVFELTDVNSEHGNAGLAQD 306 Query: 295 VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 +S+ V QL T E L L +A+F + LQF+N ++ LW+ID +FL T P Sbjct: 307 ISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQFYNAAYRSLWDIDQSFLETKP 366 Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410 ELL+ LR+A KLPEQ +++ W+ Y++ + WHLP+G+TL VI + +P+G Sbjct: 367 EEGELLDALRAARKLPEQADYRGWRTKHLECYQALDAQAFWWHLPDGRTLRVIASPHPQG 426 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 G + +EN+T Q+DLE+++N L +VQ ET+DHL+E VAVFG +GR++LSNPAF +W Sbjct: 427 GVTYFYENVTEQLDLESRFNALTRVQRETLDHLTEAVAVFGSNGRMRLSNPAFAEIWGLS 486 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530 + L H+ ++ C +SD W A +T D R S+ G +E + SV++Y Sbjct: 487 QEFLEGAPHVNDLLDNCRELMGDSDRWQELARGVTGLSDNRTSVSGRMERIDGSVIDYVT 546 Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 +PLP+ T+LTFVNVTD+V ERAL N+AL++AD++KN+F+QHVSYELRSPLT IIGF Sbjct: 547 VPLPDGGTLLTFVNVTDTVNVERALHATNDALQEADQLKNAFIQHVSYELRSPLTTIIGF 606 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL +K G L+ KQ +Y +YI +SS+ LL+++NDILDLATVDAGIM+L S + + Sbjct: 607 AQLLGDAKFGDLSPKQEEYTDYILSSSSALLHIINDILDLATVDAGIMELEISEVDVAQT 666 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++E + + ++ E++I ++ +G AD +RL Q+ +LSNA+ +S KG V + Sbjct: 667 VSEAVEGLKDRLVESDITLRTHMPDDIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDI 726 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770 R+ + F +K++G+ IP++M + VF+RFV G R+GVGLGLSIV+SF+ LHGG Sbjct: 727 SCQREENEIRFRIKDHGAGIPQEMLEQVFSRFVGRGAGGNRQGVGLGLSIVKSFVELHGG 786 Query: 771 HVSISSSDEGVTTINCRIP 789 V I+S + TT++C P Sbjct: 787 TVDITSEEGQGTTVDCTFP 805 >gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] Length = 837 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 279/771 (36%), Positives = 437/771 (56%), Gaps = 6/771 (0%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 + +FG + GM + I L+R R + ++ ++ + ++L + Sbjct: 58 MVMFGALGGMCAFAVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNTDEQRV 117 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 IVW G P+I G L ++ +P+ LL+F +WL L + + L + G++F+ Sbjct: 118 IVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNT 177 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 +T+ ++ GR +G LR+ L G AE + K+S + + L D++ Sbjct: 178 TLKTRTGSYVEALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMP 237 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 W RD G+++WAN +Y + E Q A+ E + M + F Sbjct: 238 APAWQRDAEGNVIWANDAYAEAVEMPDA--QAAVKEGATFLDAAARTAMAVQRNEDGCFS 295 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAI 319 + + G + ++I V + G AGIA+D+S+ +L E L L A+ Sbjct: 296 ARIPIVASGQRRVFEITDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAV 355 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AI+ +R LQF+N +F +LW++D A L ++P + +L+ LR+A KLPEQ +++ W+ + Sbjct: 356 AIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPEQADYRGWRNKML 415 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y+S E + WHLP+G+TL VI +P+GG +++EN+T Q+DLE++YN L +VQGET Sbjct: 416 EGYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESRYNALTRVQGET 475 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D+LSE VAVFG DG+++L NPAF +W EE +LS H+ + + C+ E W+ Sbjct: 476 LDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSRFPHVNEVVSACALNDYEKTAWEQ 535 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A+ +T D R LE + +VL+Y+ +PLP+ T++TFV+VTDSV ERAL EKN Sbjct: 536 LASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALLEKN 595 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL +AD+IKN+F+QHVSYELRSPLTNIIGF LL K G L KQ +Y +YI +SS+ Sbjct: 596 EALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGDLTEKQGEYADYIQSSSSA 655 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++NDILDLAT+DAGIM+L+ + L + + + ++ E I ++ +G+ Sbjct: 656 LLAIINDILDLATLDAGIMELDLREVDLASTVEAAVEGLKDRIAEARINLRTQVPDNIGN 715 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD +RL Q+ ++SNA+ +S V + RD+ F V+++G IP ++ VF Sbjct: 716 MIADEKRLRQVLFNLISNAVRYSEPDGVVDISCDRDDDKVTFVVQDHGLGIPAEILTQVF 775 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 NRFV + +R+G GLGL+IV+SF+ LHGG V I S TT+ C P+ Sbjct: 776 NRFVGHDTGARRQGAGLGLAIVKSFVELHGGTVDIDSVVGKGTTVTCVFPA 826 >gi|13474243|ref|NP_105811.1| two-component sensor histidine kinase [Mesorhizobium loti MAFF303099] gi|14024995|dbj|BAB51597.1| two-component sensor histidine kinase [Mesorhizobium loti MAFF303099] Length = 851 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 308/782 (39%), Positives = 464/782 (59%), Gaps = 12/782 (1%) Query: 13 GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72 G+ I T+ ++AVF + G + I+LIR+R + + E S +++I L + Sbjct: 67 GLSINTVEVMQLAVFVGVTG---AAFLSAIVLIRERARTSAENVELRSRVADINAALRRS 123 Query: 73 HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132 +LL + +VW +++ PE+IG L P+ + L+F WL L A Sbjct: 124 EALLNLRDQRVVVWASENKKPELIGTLPVESGAPEERSAFLAFGRWLMPRSAAALEHAIA 183 Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192 LR++ + FDLV E+Q +++ GR S + +R +SL A + ++L+ Sbjct: 184 GLREKARPFDLVIESQAGAPLEVHGRKSAAHILVRFVSLSETQRSQARLKIDNQRLAADH 243 Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252 L ++L W RD+ G + W N +Y E + A+ ++R+ + ++ + Sbjct: 244 DTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEA--ESAEAAVRDAREFLGGQAREAI 301 Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309 + F +++ST+ G+ + + + + G AG+A D S + + T Sbjct: 302 DAQHKTHPVFEQSLSTVIEGDRRVFAVTDFASPDGSAGLAADTSAIEAIRGEYERTVRSH 361 Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368 + L L A+AIFD + L+F N++F +LW +D FL + P N LL+ LRS K+ EQ Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQ 421 Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428 W+ WKE + Y++ E+ + WHLP+G+T+ V+ P+GG W+FENLT ++DLE++ Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481 Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW P H+ I C Sbjct: 482 YRTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPNVHVSTIRDLCD 541 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R +S W F A IT FDDER+ G EL + +VL Y++IPLPN Q M+TFV+VTDS Sbjct: 542 RQAVDSP-WPGFVAAITGFDDERRDRHGQSELNNGTVLRYAVIPLPNGQVMMTFVDVTDS 600 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL G LN KQ + Sbjct: 601 VHVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPLNQKQRE 660 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YVE++S+SS++LL +VNDILDLATVDAGIM+L+ S + ++ + + +A ++ E++IR Sbjct: 661 YVEHVSSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRLQEHSIR 720 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 ++V + +F D R+ QI +LSNA +++ + ST+ L A R D + FSV ++G Sbjct: 721 LEVDARAAPKTFHGDEIRIRQILYNLLSNAANYAPEASTIRL-ACRHLADGVEFSVHDDG 779 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +P D+ SVF RF A+ G+RRG GLGLSIV+SF+ LHGG+V I + + TT+ C Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGNVRIETGKDKGTTVICT 839 Query: 788 IP 789 P Sbjct: 840 FP 841 >gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum gilvum SL003B-26A1] gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum gilvum SL003B-26A1] Length = 807 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 281/801 (35%), Positives = 446/801 (55%), Gaps = 22/801 (2%) Query: 2 MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61 +A +T+ + L + KI G + G + + +R R + ++ Sbjct: 6 LACQSTLAAAAPLAEIGLSADKIVWLGALGGACAFAVTAAVAFLRTRRAGDVRMEALARE 65 Query: 62 LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121 ++ + + S+L I W G ++ P + G + + P+ LL+F +WL+ Sbjct: 66 SRDLRLYVDRLESMLNTEEQRMIAWVGAEDRPRVWGVMPESSGAPRAPGQLLAFGSWLEP 125 Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181 L +LR G +F + T+ ++ GR +G A LR+ L G AE Sbjct: 126 KSAEVLEAHLGRLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRDLTGERQAQAEL 185 Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--------EGIVF 233 + +LS + + L +++ W RD G + WAN +Y + + + F Sbjct: 186 AARNARLSGELHMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVADAATAVRDNVDF 245 Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293 A G ++ M + F + + G + +++ V + G A +AI Sbjct: 246 LDAAG----------REAMSRDRDDDGCFRARMPIVAAGERRVFEVTDVSANVGGAALAI 295 Query: 294 DVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349 D+S+ + +L T E L L A+AI+ +R LQF+N +F LW +D AFL Sbjct: 296 DISELDRLKKELRRTEEFHGSTLDQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGR 355 Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409 P + +L+ LR+A KLPEQ +++ W+ + Y+S E + WHLP+G+TL VI +P+ Sbjct: 356 PEDGAVLDALRAARKLPEQADYRVWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHPQ 415 Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469 GG +++EN+T ++DLE++YN L++VQGET+D+LSE VAVFG DGR++L NPAF S+W Sbjct: 416 GGVTYIYENVTERLDLESRYNALIRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDL 475 Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529 E++L+ HI ++ C+ +E W A +T D R L G +E +VL+Y+ Sbjct: 476 PEDQLANMPHINDVVEWCAARPDEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYA 535 Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 +PLP+ T++TFVNVTDSV ERAL EKNEAL +AD++KN+F+QHVSYELRSPLTNIIG Sbjct: 536 TVPLPDGGTLVTFVNVTDSVNVERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIG 595 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F LL K G L+ KQ +Y +YI +SS+ LL ++NDILDLAT+DAGIM+L+ + + D Sbjct: 596 FAQLLSDPKFGELSRKQGEYADYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVAD 655 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + + + ++ + I ++ G +G+ AD +RL Q+ +++NA+ +S +G + Sbjct: 656 TVAAAVEGLKDRLADAKIVLRTHVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVID 715 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 + R +G +F+VK++G IP++M VF+RFV + +RRG GLGLSIV+SF+ LHG Sbjct: 716 VTCGRKDGAVVFTVKDHGCGIPQEMIDQVFSRFVGHDAGTKRRGAGLGLSIVKSFVELHG 775 Query: 770 GHVSISSSDEGVTTINCRIPS 790 G V I S + TT+ C P+ Sbjct: 776 GQVEIQSREGVGTTVTCTFPA 796 >gi|240849710|ref|YP_002971098.1| sensor histidine kinase protein [Bartonella grahamii as4aup] gi|240266833|gb|ACS50421.1| sensor histidine kinase protein [Bartonella grahamii as4aup] Length = 821 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 291/772 (37%), Positives = 450/772 (58%), Gaps = 22/772 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A+ G I+ L T + +I+ R + + K + + SE +L Y LL E Sbjct: 58 LALCGGISCASLLTCLAVIM--RAKKTAQKPLKIIQANFSE---KLKYYEWLLEETEQFL 112 Query: 84 IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141 ++W+ P ++G L Q+I I Q D FE W++ + +L +LR + F Sbjct: 113 LIWENPTTLPRVVGALSALQKIGIDQKD--FQRFELWVEENSLRELDYVLTQLRCKCHPF 170 Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201 DL T N+ +++ G ++G+ A R + SE A +L + + + L D Sbjct: 171 DLSITTTNNVLLQVTGVIAGTVAIARFQDISKQQSENARLQKDIARLLTELRMQRNLLDL 230 Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261 + VW +D G + + N ++++ T+ F++ E LF E +++ + E Sbjct: 231 IQEPVWIKDCEGKVCFINRAFREMTD-----FREDSDEVGDLFNENTQRK---TDETETI 282 Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTV 317 F E V T+ G + + R+ + G A A D S + +L++ E L ++ Sbjct: 283 FQEHVHTVIDGERHRFHLTRITTAEGMAAFARDDSAYENLAHELSYVLQSHCETLDQIST 342 Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377 A+AIFD N+ L+F N +F LW ++ +FL + PS+ LE LR + E +W+ WKE Sbjct: 343 AVAIFDTNQKLKFCNHAFKILWPLETSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEE 402 Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 +F Y+ +E+++ W+LP+G+T+ VI +P+GG W++ENLT ++DLE +YNTL+K+QG Sbjct: 403 LFKAYRQTESNQQIWNLPDGRTVRVISNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQG 462 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 ET+D LSEGV VFG DGR++LSNPA LW N L GTHI + + CS W Sbjct: 463 ETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEW 521 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 D F IT F ++R++ G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V RAL E Sbjct: 522 DQFTKFITGFAEKRETYSGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQE 581 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +NEAL AD ++N FVQHVSYELR+PLTNIIGF+D+L+ GS+N +Q +Y+ +I + S Sbjct: 582 RNEALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINKRQQEYLGHIHSES 641 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LLN+VNDILDLAT+DAGIM+L+ ++ + D + + I +++ +I + L Sbjct: 642 GTLLNIVNDILDLATLDAGIMELDIKSVNIADAMIQAVARIEDRLNGRHITLLQQISPSL 701 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 S AD +RL QIF +LSNA++F+++ ST+ + + +FSV N GS IPED+ Sbjct: 702 NSISADEKRLHQIFVNVLSNAINFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDVLDR 761 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF S++H G R G GLGLS+V+SF+ LHGGHV I + TT+ C P Sbjct: 762 IFKRFSSHSHHGGRAGAGLGLSLVKSFVELHGGHVEILTGSGKGTTVKCFFP 813 >gi|49474858|ref|YP_032899.1| sensor histidine kinase protein [Bartonella henselae str. Houston-1] gi|49237663|emb|CAF26846.1| Sensor histidine kinase protein [Bartonella henselae str. Houston-1] Length = 821 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 289/776 (37%), Positives = 452/776 (58%), Gaps = 23/776 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A+ G I+ L T + +I+ R + +L K + +F +++ ++L Y LL E Sbjct: 58 LALCGGISCASLFTCMAVIM--RAKKTLQKPLQ---TFQTDLSEKLKYYEWLLEETGQYL 112 Query: 84 IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141 ++W+ P ++G + Q++ I Q D FE WL+ + +L A ++LR + F Sbjct: 113 LIWENPTALPRVVGNIPTLQKVGIHQQD--FQRFEFWLEENSLRELDYALKQLRYKSHPF 170 Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201 +L T+N+ + + G ++G+ A R + SE A ++ + + + L D Sbjct: 171 ELSLFTKNNMLLHVTGVIAGTVAIARFQDISLQQSENARLQKNIARILTELRMQRNLLDV 230 Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261 + VW +D G I + N ++++ T F++ E LF E +++ + E Sbjct: 231 IQEPVWIKDSEGKICFINRAFREITG-----FREGSNEVVDLFNETTQRK---TDETETV 282 Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTV 317 F E V T+ G + + R+ + G A A D S + ++L + E L ++ Sbjct: 283 FQEHVHTVLDGERHRFHLTRITTAEGMAAFARDDSAYENLANELRRVFQNHCETLDQIST 342 Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377 A+A+FD N+ L+F N +F LW ++ +FL + PS+ LE LR + E +W+TWKE Sbjct: 343 AVAVFDSNQKLKFCNHAFKILWPLENSFLESEPSHTLFLERLREKGLIGEHPDWRTWKEE 402 Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 + Y+ +E+++ W+LP+G+T+ VI + +P+GG W++ENLT ++DLE +YNTL+K+QG Sbjct: 403 LLKAYRQTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLEQRYNTLIKIQG 462 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 ET+D LSEGV VFG DG ++LSNPA LW N L GTHI + + CS + W Sbjct: 463 ETLDKLSEGVVVFGTDGCLRLSNPALSKLWSLPYNLLVEGTHITQLQSYCSPLTLRQE-W 521 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 D F IT F +ER + G ++L + +++Y+++PLPN +TMLTFVNVTD+V RAL E Sbjct: 522 DWFTKFITGFAEERDTYSGRMDLKNGMIIDYTLVPLPNGETMLTFVNVTDTVHVARALQE 581 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KNEAL AD ++N FVQHVSYELR+PLTNIIGF+D+L+ G +N +Q +Y+ +I + S Sbjct: 582 KNEALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPINERQQEYLGHIHSES 641 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LLN+VNDILDLAT+DAGIM+L+ + + D + + + +++ +I + L Sbjct: 642 GSLLNIVNDILDLATLDAGIMELDIKPVNIADAMVQAVARVEERLNGRHITLLQQISPSL 701 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QIF +LSNA++F+++ ST+ A + D +FSV N GS IPED+ Sbjct: 702 NFISVDATRLHQIFVNVLSNAINFATEASTIEFCAEEKDDDIVFSVHNEGSDIPEDILDR 761 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792 +F RF S++H G R G GLGLS+V+SF+ LHGG V I + TT+ C P SKE Sbjct: 762 IFKRFSSHSHHGGRAGAGLGLSLVKSFVELHGGRVEIFTGTGQGTTVKCFFPISKE 817 >gi|220921597|ref|YP_002496898.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219946203|gb|ACL56595.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 830 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/768 (36%), Positives = 432/768 (56%), Gaps = 17/768 (2%) Query: 32 GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91 G+++ + I +L IR+R A++ ++ + L+++ + LL + I W G+DE Sbjct: 58 GLIVFSTILSLLHIRERGRWARREHDLVAELADLRGAHDRAALLLGSERQIIITWCGRDE 117 Query: 92 TPEIIGQLHQRIDIPQTDTD--LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149 P+I G +D ++ + +L+F WL L A + LR G+ F L T Sbjct: 118 -PQIEGDASLAMDGTRSASPRRVLAFGTWLSAADAAALDAAVDTLRSRGERFRLTVRTLG 176 Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209 I+ +G+ A LR+ L G EL E ++ +SV L D++ VW R Sbjct: 177 GRTIEAQGQAVSGRALLRLRELTGERQELVELRAMLQEARGSLSVLAALLDAIPQPVWRR 236 Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMISSSALEKNFCET 265 + G +LWAN +Y E ++A+ E +L +EE +R S + Sbjct: 237 GRDGRLLWANAAYVAAVEAGD--RERALAEGTELLDRVAREEAGRRRSSG----QGGALR 290 Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI 321 VS + G ++ + V G GIA+DVS+ +V L E L L A+AI Sbjct: 291 VSAVMAGARRTLDVTEVAVESGSVGIAVDVSELESVRADLQRQMEANARTLDQLPTAVAI 350 Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 FD + L FHN ++ +LW++D FL NP + E+L+ LR+A KLPEQ ++++WK + S Sbjct: 351 FDARQRLIFHNAAYRQLWDLDPGFLDGNPLDGEILDALRNARKLPEQADFRSWKTGVLSA 410 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 Y+++E ++ WHLP+G+TL V+ NP+GG ++F++++ +V LE++YN L++VQ ET+D Sbjct: 411 YRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERVHLESRYNALMRVQSETLD 470 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 L E VAVFG DGR+KL+N AF ++W+ L HI + A C + W Sbjct: 471 TLREPVAVFGSDGRLKLANRAFTAIWRIGPELLGTQPHIDEVIALCRPLSPAEEPWTEIR 530 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 +T D R +L L L +VL+ + PLP+ T+LT ++VT SV ERALTEKNEA Sbjct: 531 GAVTGLMDARHALACRLALKDGTVLDCAAQPLPDGATLLTHIDVTASVNVERALTEKNEA 590 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + +++ FV HVSYELRSPLTNIIGFT+LL +G+LN++Q +Y ++I SS LL Sbjct: 591 LERTARLRDEFVHHVSYELRSPLTNIIGFTELLGDETVGALNTRQREYADHIMRSSAALL 650 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDLA++DAG M+L + + + + + ++ E I + +G FV Sbjct: 651 VIINDILDLASIDAGSMELTREVVDVQATIAAAVRGVEDRLAEAAITLDRDVPADIGGFV 710 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +R+ QI +LSNA+ FS+ G TV+++A + + + F+V + G +P ++ VF+R Sbjct: 711 ADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKTDREIAFAVIDQGRGMPPEVVARVFDR 770 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F S+ + RGVGLGLSIV SF+ LHGG + I+S+ T + C P Sbjct: 771 FESHTLGTRHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTKVTCTFP 818 >gi|254696348|ref|ZP_05158176.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 2 str. 86/8/59] Length = 581 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/562 (44%), Positives = 376/562 (66%), Gaps = 7/562 (1%) Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294 + I E R+LF + ++R+ E E ++ + HG+ + + ++ V G G+ D Sbjct: 13 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 72 Query: 295 VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 +++ V D+L+ T E L L+ A+AIFD LQF N++FV+LW +D+A+L T P Sbjct: 73 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 132 Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410 SN + + LR+ KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+G Sbjct: 133 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 192 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 G W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW Sbjct: 193 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 252 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529 + GTHI IA C++ DG W+ F + +T F D+R G +EL ++L ++ Sbjct: 253 SEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFA 310 Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 ++PLP QTMLTF++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIG Sbjct: 311 VVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIG 370 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 FT+LL+T GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L + + + Sbjct: 371 FTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVE 430 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ ++ ++ ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++ Sbjct: 431 AISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIV 490 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 L+ ARD D +F+V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHG Sbjct: 491 LQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHG 550 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G V I + +E TT+ CR PS+ Sbjct: 551 GRVEIDTGEERGTTVICRFPSE 572 >gi|260760720|ref|ZP_05873063.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260671152|gb|EEX57973.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 574 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/562 (44%), Positives = 376/562 (66%), Gaps = 7/562 (1%) Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294 + I E R+LF + ++R+ E E ++ + HG+ + + ++ V G G+ D Sbjct: 6 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 65 Query: 295 VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 +++ V D+L+ T E L L+ A+AIFD LQF N++FV+LW +D+A+L T P Sbjct: 66 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 125 Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410 SN + + LR+ KLPEQ W+ WK+++ S Y++ E + WHLP+ +T+ V+ +P+G Sbjct: 126 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 185 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 G W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW Sbjct: 186 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 245 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529 + GTHI IA C++ DG W+ F + +T F D+R G +EL ++L ++ Sbjct: 246 SEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFA 303 Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 ++PLP QTMLTF++VTD+VR ERAL EKNEAL AD+IKN FVQHVSYELRSPLTNIIG Sbjct: 304 VVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIG 363 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 FT+LL+T GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L + + + Sbjct: 364 FTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVE 423 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ ++ ++ ++NI + V + F AD R+ Q+ +LSNA++++ +GS ++ Sbjct: 424 AISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIV 483 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 L+ ARD D +F+V ++G +P ++ +VF RF S + G+RRG GLGL+IV+SF+ LHG Sbjct: 484 LQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHG 543 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G V I + +E TT+ CR PS+ Sbjct: 544 GRVEIDTGEERGTTVICRFPSE 565 >gi|319898223|ref|YP_004158316.1| sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402187|emb|CBI75718.1| Putative sensor histidine kinase [Bartonella clarridgeiae 73] Length = 825 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 301/778 (38%), Positives = 442/778 (56%), Gaps = 29/778 (3%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 I +FG+I+ L I II++I + +L K + LSE +L Y LL E Sbjct: 64 IVLFGSISCSSL--FICIIVIINTKRALWKSWKMIQANLSE---KLKNYEWLLEETGQCL 118 Query: 84 IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141 +WD P I+G + Q+ I Q D FE WL+ + + +A +LR G SF Sbjct: 119 FIWDNPTALPRIVGNIPALQKAGIHQKD--FQCFEKWLEKNSLQQFDQALTQLRCNGCSF 176 Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201 +L T + ++I G ++G+ A +R + SE ++ + + + L D Sbjct: 177 ELSVTTTSKIMLQITGIIAGTAAIVRFQDISAQQSENIRLQKDAIQILTELKMQRNLLDH 236 Query: 202 LDFLVWHRDQAGDILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258 + VW RD G I + N ++++ T E IV LF E + ++ Sbjct: 237 IREPVWIRDCEGKICFTNRAFREMTNFQENNNIV---------DLFNE---TTLCTTDET 284 Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHN 314 E F + V T+ G + + R+ G A A D S E V + L E L Sbjct: 285 EAIFQKHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMGRILQSHCETLDQ 344 Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 ++ A+AIFD N+ L+F N +F LW ++++FL + PS+ LE LR + E +W+ W Sbjct: 345 ISTAVAIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLFLEHLREKGFIGEHPDWRVW 404 Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434 KE + VY+ +E+++ W+LP+G+T+ VI + +P+GG W++ENLT ++DLE +YNTL+K Sbjct: 405 KEELLKVYRLTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLERRYNTLIK 464 Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 +QGET+D LSEGV VFG DGR++LSNPA LW N L GTHI + CS Sbjct: 465 IQGETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLLVEGTHITQLQNHCSAL-TTG 523 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 + W F IT F ++R + G ++L S +++Y++ PLPN QTMLTFVNVTD+V RA Sbjct: 524 EEWKQFTQFITGFAEKRDAYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARA 583 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EKNEAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+ GS+N +Q +Y+ YI Sbjct: 584 LQEKNEALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGYIH 643 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + S +LLN+VNDILDLAT+DAGIM L+ + + + + + + ++H I + Sbjct: 644 SESGVLLNIVNDILDLATLDAGIMILDIKPVHIAEAMTQAVARVEERLHGRQITLSQHIS 703 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L AD +RL QIF +LSNA++F+++ ST+ +A IFSV N GS IP D+ Sbjct: 704 PSLKFISADVKRLHQIFVNVLSNAINFATEKSTIEFRADTQGDHIIFSVHNEGSDIPTDI 763 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF S++H G R G GLGLS+V+SF+ LH G V I + TT+ C P+KE Sbjct: 764 LDRIFKRFSSHSHHGGRAGAGLGLSLVKSFVELHDGRVEIFTGMGQGTTVKCFFPNKE 821 >gi|170738842|ref|YP_001767497.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168193116|gb|ACA15063.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 830 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 269/725 (37%), Positives = 412/725 (56%), Gaps = 17/725 (2%) Query: 75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTD--LLSFENWLKFHHYIKLSKATE 132 LL + +VW G+DE P I G +D +T + +L+F WL L A + Sbjct: 101 LLGSERQIVVVWSGRDE-PLIEGDASLAMDGTRTASPRRVLAFGTWLTAADAAALDAAVD 159 Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192 LR G+ F L A T ++ +G+ G A LR+ + G EL E ++ + Sbjct: 160 TLRSRGERFRLTARTLGGRTVEAQGQAVGGRALLRLREITGERQELVELRATLQEARGSL 219 Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEI 248 SV L D++ VW R + G +LWAN +Y E ++ + E +L ++E Sbjct: 220 SVLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEATD--RERVVAEGVELLDRAARDEA 277 Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308 ++R S A VS + G ++ + V G GIA+DVS+ +V L Sbjct: 278 ERRRTSREA----GALRVSAVVAGARRTLDVTEVALETGSVGIAVDVSELESVRADLQRQ 333 Query: 309 YE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 E L L A+AIFD + L FHN ++ +LW++ AFL +P + E+L+ LR+A K Sbjct: 334 MEANVRTLDQLPTAVAIFDARQRLIFHNAAYRQLWDLGPAFLDGSPLDGEILDALRNARK 393 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424 LPEQ ++++WK + S Y+++E ++ WHLP+G+TL V+ NP+GG ++F++++ +V Sbjct: 394 LPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERVH 453 Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484 LE++YN L++VQ ET+D L E VAVFG DGR+KL+N AF ++W+ L+ H+ I Sbjct: 454 LESRYNALMRVQSETLDTLKEPVAVFGSDGRLKLANRAFMAIWRIGPETLAAQPHVDEII 513 Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 C + W +T D R ++ LEL +VL+ + PLP+ T+LT ++ Sbjct: 514 GLCRSLSAAEEPWTEIRGAVTGLMDARHAVASRLELKDGTVLDCAAQPLPDGATLLTHID 573 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 VT SV ERALTEKNEAL + +++ FV HVSYELRSPLTNIIGFT+LL +G+LN+ Sbjct: 574 VTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTELLGDETVGALNT 633 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +Y ++I SS LL ++NDILDLA++DAG M+L + + + + I ++ E Sbjct: 634 RQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIAAAVRGIEDRLAE 693 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 I + + +G FVAD +R+ QI +LSNA+ FS+ G TV+++A + + FSV Sbjct: 694 AAITLDLDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKTGAEIAFSVI 753 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G +P ++ VF+RF S+ + RGVGLGLSIV SF+ LHGG + I+S+ T + Sbjct: 754 DQGRGMPPEVVARVFDRFESHTLGTRHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTRV 813 Query: 785 NCRIP 789 C P Sbjct: 814 TCTFP 818 >gi|49473713|ref|YP_031755.1| sensor histidine kinase protein [Bartonella quintana str. Toulouse] gi|49239216|emb|CAF25535.1| Sensor histidine kinase protein [Bartonella quintana str. Toulouse] Length = 814 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/746 (37%), Positives = 438/746 (58%), Gaps = 19/746 (2%) Query: 52 AKKVNETY--SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH--QRIDIPQ 107 AKK ++ + + ++ ++L Y LL E ++W+ P +IG + Q+ IPQ Sbjct: 77 AKKASQKFLKTIQADFSEKLKYYEWLLEETGQYLLIWETPTALPHVIGNIPALQKAGIPQ 136 Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167 + FE WL+ ++L A +LR + F+L T+N+ +++ G ++G+ A R Sbjct: 137 QN--FQCFELWLEETSLLELDHALTQLRCKSHPFELSITTKNNMLLQVTGVIAGTVAIAR 194 Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227 SE A ++ + + + L D + VW +D G + + N ++++ T Sbjct: 195 FQDTSTQQSENARLQKDITRILTELRMQRNLLDLIQEPVWIQDCEGKVCFINRAFREMTG 254 Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287 F++ + LF E +++ + E F E V T+ G + + R+ + G Sbjct: 255 -----FREDSNKVVDLFNETTQRQ---TDETETIFQEHVHTVIGGERYRFHLTRITTTEG 306 Query: 288 EAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343 A A D S ++++L E L ++ A+AIFD N+ L+F N +F LW ++ Sbjct: 307 MAAFARDDSAYENLSNELRRVLQSHCETLDQISTAVAIFDTNQKLKFCNHAFKILWPLEN 366 Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403 +FL + PS+ LLE LR + E +W+TWKE +F Y+ +E+++ W+LP+G+T+ VI Sbjct: 367 SFLESEPSHTLLLERLREKGLIGENPDWRTWKEELFKAYRQTESNQQIWNLPDGRTVRVI 426 Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463 + +P+GG W++ENLT ++DLE +YNTL+K+QGET+D LSEGV VF DGR++LSNPA Sbjct: 427 SSPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFATDGRLRLSNPAL 486 Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523 LW N L GTHI + + CS WD F IT F ++R + G ++L + Sbjct: 487 SKLWSLPYNLLVEGTHITQLQSYCSPL-TVGKEWDRFTKFITGFAEKRDTYSGRMDLKNG 545 Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 V++Y+++PLPN +TMLTFVNVTD++ RAL EKNE L AD ++N FVQHVSYELR+P Sbjct: 546 MVIDYTLVPLPNGETMLTFVNVTDTIYVARALQEKNETLESADRLRNEFVQHVSYELRTP 605 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 LTNIIGF+D+L+ GS+N +Q +Y+ +I + S+ LLN+VNDILDLAT+DAGIM+LN Sbjct: 606 LTNIIGFSDILRDQIFGSINERQKEYLGHIHSESSTLLNIVNDILDLATLDAGIMELNIK 665 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++ + D + + + +++ +I + L AD RL QIF ILSNA++F++ Sbjct: 666 SVNIADAMVQAVARVEERLNGRHITLLQQISPSLNFISADATRLHQIFVNILSNAINFAT 725 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 + ST+ A + + +FSV N GS IP+D+ +F RF S++H G R G GLGLS+V+S Sbjct: 726 EASTIEFCAEEQDNNIVFSVHNEGSDIPKDILDRIFKRFSSHSHHGGRAGAGLGLSLVKS 785 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 F+ LH GHV I + TT+ C P Sbjct: 786 FVELHNGHVEILTGAGQGTTVQCFFP 811 >gi|163867336|ref|YP_001608530.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476] gi|161016977|emb|CAK00535.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476] Length = 821 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 282/755 (37%), Positives = 441/755 (58%), Gaps = 20/755 (2%) Query: 41 IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH 100 +++++ + ++ K + ++ LSE +L Y LL E L ++W+ P ++G L Sbjct: 73 VVVIMHAKKAVQKPLKTVHADLSE---KLKYYEWLLEETEQLLLIWENPTTLPRVVGTLS 129 Query: 101 --QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR 158 Q+I I Q + FE W++ + +L A +LR + F+L T N +++ G Sbjct: 130 TLQKIGIDQQN--FQRFELWVEENSLRELDYALTQLRCKCHPFELSITTTNHVLLQVTGV 187 Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218 ++G+ A R + SE A L + + + L D + VW +D G + + Sbjct: 188 IAGTVAIARFQDISKQQSENARLQKDIAHLLTELRMQRNLLDLIQEPVWIKDCKGKVCFI 247 Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278 N +++ E I +++ E LF E + + + E F E V T+ G + + Sbjct: 248 NRAFR-----EMIDYREGSDEVGDLFNENTQCK---TDETETIFQEHVHTVIDGERRRFH 299 Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRS 334 + R+ + G A A D S + +L + E L ++ A+AIFD N+ L+F N + Sbjct: 300 LTRITTAEGMAAFARDDSAYENLAHELRYILQSHCETLDQISTAVAIFDTNQKLKFCNHA 359 Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394 F LW ++ +FL + PS+ LE LR + E +W+ WKE +F Y+ E+++ W+L Sbjct: 360 FKILWPLESSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEELFKAYRQMESNQQIWNL 419 Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454 P+G+T+ V+ +P+GG W++ENLT ++DLE +YNTL+K+QGET+D LSEGV VFG DG Sbjct: 420 PDGRTVRVVSNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGMDG 479 Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514 R++LSNPA LW N L GTHI + + CS WD F IT F ++R++ Sbjct: 480 RLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEWDKFTKFITGFAEKRETY 538 Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V RAL E+NEAL AD ++N FVQ Sbjct: 539 SGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERNEALESADRLRNEFVQ 598 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 HVSYELR+PLTNIIGF+D+L+ GS+N +Q +Y+ +I + S LLN+VNDILDLAT+D Sbjct: 599 HVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGHIHSESGTLLNIVNDILDLATLD 658 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AGIM+L+ + + D + + + +++ +I + L S AD +RL QIF + Sbjct: 659 AGIMELDIKPVNIADAMIQAVARVEDRLNGRHITLLQQISPSLNSISADEKRLHQIFVNV 718 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA++F+++ ST+ + + +FSV N GS IPED+ +F RF S++H G R G Sbjct: 719 LSNALNFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDILDRIFKRFSSHSHHGGRAGA 778 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLS+V+SF+ LHGG+V I + TT+ C P Sbjct: 779 GLGLSLVKSFVELHGGYVEILTGSGKGTTVKCFFP 813 >gi|319407902|emb|CBI81556.1| sensor histidine kinase protein [Bartonella schoenbuchensis R1] Length = 817 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 289/775 (37%), Positives = 439/775 (56%), Gaps = 22/775 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A+FG I+ L I +I+ I++ + K+ + F ++L Y L E Sbjct: 54 LALFGGISCASLLICIAVIVAIKKASWKPLKMIQADFF-----EKLKYYEWLFEETGQCL 108 Query: 84 IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141 ++W+ P I+G + Q+++I Q + F WL+ +L +A +LR G F Sbjct: 109 LIWENPTALPHIVGNISALQKMEINQKN--FQCFGRWLEESSLRQLDQALIELRCNGCPF 166 Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201 +L T N +++ G ++G+ A R ++ SE +L +++ + L D Sbjct: 167 ELSITTTNKILLQVTGVIAGTAAIARFQNISTQQSENIRLQKNIAELLKELNLQRNLLDH 226 Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261 + VW +D G I + N ++++ T F++ LF E + + + E Sbjct: 227 IQEPVWIQDCKGKICFINRAFREITG-----FKEGSNHITDLFNEATQCK---TGEAETV 278 Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEILHNLTV 317 F E V T+ G + + + RV G A A D S + + L + E L ++ Sbjct: 279 FQEHVHTVVDGERRHFHLTRVTTREGMAAFARDDSAHENLTKEMRRILQNHCETLDQIST 338 Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377 A+AIFD ++ L+F N +F LW ++ +FL + PS+ LLE LR L E +W+ WKE Sbjct: 339 AVAIFDAHQKLKFCNHAFKVLWPLENSFLESEPSHSLLLEQLREKGLLGEHPDWRAWKEE 398 Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 +F Y+ E+ + W+LP+G+T+ VI + +P+GG W +ENLT ++DLE +YNTL+K+QG Sbjct: 399 LFKAYQQIESDQQIWNLPDGRTVRVIASPHPQGGVTWFYENLTEKIDLERRYNTLIKIQG 458 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 ET+D LSEGV VFG DGR++LSNPA LW N L GTHI + CS W Sbjct: 459 ETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQTHCSTL-TVGQEW 517 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 + F IT F D+R + G ++L + ++++Y+++PLPN QTMLTFVNVTDSV RAL E Sbjct: 518 EQFTKFITGFADKRDAYSGRIDLKNGTIIDYTLVPLPNGQTMLTFVNVTDSVHIARALQE 577 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +NEAL AD ++N FVQHVSYELR+PLTNI+GF+D+L+ GS+N +Q +Y+ +I + S Sbjct: 578 RNEALESADRLRNEFVQHVSYELRTPLTNIVGFSDILRDQIFGSINERQHEYLGHIQSES 637 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LLN+VNDILDLAT+DAGIM+L+ + + D + + + ++ I L Sbjct: 638 NALLNIVNDILDLATLDAGIMELDIKPVNIADAMAQAVARVEEHLNGRYITFSQQISPSL 697 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +AD RL QIF ILSNA++F+++ ST+ A + + +FSV N GS IP D+ Sbjct: 698 NFILADATRLHQIFVNILSNAVNFATEESTIEFCANKQGDNIVFSVHNEGSDIPTDILDR 757 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF S H G R G GLGLS+V+SF+ LHGGHV I + TT+ C P ++ Sbjct: 758 IFKRFSSRPHHGGRAGAGLGLSLVKSFVELHGGHVKILTGTGQGTTVKCFFPVQK 812 >gi|209883640|ref|YP_002287497.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209871836|gb|ACI91632.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 816 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 273/764 (35%), Positives = 422/764 (55%), Gaps = 13/764 (1%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ I L+R R S A + ++ + + + +LL + I W DE P+I Sbjct: 50 SVVATIALLRTRLSAAATEAKLHADNQALQSETDRLRALLFAEPQVLIAWSAGDERPDIT 109 Query: 97 GQLHQRIDIPQTDT----DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152 G + +PQ T +L+F WL + + A + LR+ G+SF L T N A Sbjct: 110 GDTA--LLMPQGQTAPAQRILAFGTWLHPEQALAMDHAVDGLRERGESFLLTMATSNGRA 167 Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212 I+ GR G A +RI L G+ ELAETT + + L + ++ +W Sbjct: 168 IEAMGRAVGGQAIVRIRELSGVRLELAETTQRHRDLLEETDALRAFAAAIPLPLWALRTD 227 Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272 G + +AN +Y + E E AI S +L E + M + A K + + G Sbjct: 228 GTLRYANAAYAQAAEAENPA--DAIARSVELLDSEDRTAMRDALADGKAYRARLPVAIGG 285 Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYL 328 +++ + G G+A+D S+ + D LTH +L L+ +A+FD +R L Sbjct: 286 ERRTFDVFAFNIGDGSVGMAVDASETVAFKDALTHMASAHRRMLDQLSSGVAVFDADRRL 345 Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388 F+N S+ LW++D AFL ++P + +LE LR+ K+PEQ +++ WK + Y++ E Sbjct: 346 AFYNDSYRRLWDLDSAFLDSSPDDSSVLEKLRAMRKIPEQPDFRAWKAKLHEAYRAVEPA 405 Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448 KDTW+LP+G+ + ++ T NP GG ++F+++T + L+ +++ L++VQ ET+D+L+E VA Sbjct: 406 KDTWYLPDGRAISIVTTPNPEGGVTYLFDDVTEGLKLQRQHDGLLRVQRETLDNLAEAVA 465 Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508 VFG +GR +L NP F +WK L HI I C + E+ W A IT D Sbjct: 466 VFGGNGRARLFNPPFARMWKLSPEALEQQPHIETIEQWCRPLFEEAATWQAMRAAITGID 525 Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568 + R+ LQ LE SVL+ + +PLP+ TMLTF +VTD+V ERAL E+N+AL AD++ Sbjct: 526 N-REPLQLRLERKDGSVLDCTTMPLPDGATMLTFQDVTDTVNVERALRERNDALEAADQM 584 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K FV HVSYELRSPLT IIGF L G + KQS+Y+ YI+ S+ LL ++N+IL Sbjct: 585 KVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTVKQSEYLGYITTSTNALLAIINNIL 644 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLAT++AG M L+ + L + E + ++ +NIR+ V D + FVAD +R++ Sbjct: 645 DLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLAVEIDPSVTGFVADERRMV 704 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QIF +L+NA+ FS T+ A R+NG +V + G IP +M +F+ F S A+ Sbjct: 705 QIFYNLLANAIGFSPPNGTIRFSAWRENGAVCCAVSDAGPGIPPEMRDRMFDWFESRANG 764 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + RG GLGLS+V SF+ LHGG V + S+ + TT+ C P+ + Sbjct: 765 SRHRGAGLGLSLVRSFVELHGGTVRVDSAVDQGTTVTCEFPADQ 808 >gi|146337252|ref|YP_001202300.1| putative sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146190058|emb|CAL74050.1| Putative sensor histidine kinase [Bradyrhizobium sp. ORS278] Length = 835 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 277/792 (34%), Positives = 427/792 (53%), Gaps = 18/792 (2%) Query: 11 GKGIE---ICTLFSCKIAVFGTIAGMLLT---TIIPIILLIRQRNSLAKKVNETYSFLSE 64 G G+ I +LF + + ML +++ I L+R R + A+K + ++E Sbjct: 40 GDGVPADAISSLFELSRSDVAEVTAMLALLGFSVVAAIALVRTRLAAARKEARLRADVAE 99 Query: 65 ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI--DIPQTDTDLLSFENWLKFH 122 + Q +Y +LL + I W P+I G + D PQ +L+F +WL Sbjct: 100 LQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTSMLVPSDQPQR---ILAFGSWLPPE 156 Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182 ++L A E LR+ G+ F L T + AI+ GR G A +RI L G+ ELAET Sbjct: 157 PALQLDHAVEALREAGEGFMLHLTTSHGHAIEAMGRAIGGQAIVRIRELSGLRRELAETQ 216 Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L+ K L + L +L + +W R G + + N +Y + + I AI + + Sbjct: 217 LRFKALGEETESLRALASALPWPIWARHANGALAYVNAAYARAADARDI--PDAISRNLE 274 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302 L + + + +F + + G + + + G AG+AID S+ + Sbjct: 275 LLDSADRSDLQRALGAGGHFEGRLPIVMGGERRMHDVRAFTLGGGSAGVAIDASEAAALT 334 Query: 303 DQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358 D L +E L L+ +A+FD R L F+N S+ LW++D AFL + P + +L+ Sbjct: 335 DALVRMHEAHRRTLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDTAFLDSQPDDSSVLDR 394 Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418 LR++ KLPEQ +++ WK + Y++ E KDTW LP+G+ L V+ T NP GG ++F++ Sbjct: 395 LRASRKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDD 454 Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 +T L +Y+ L++VQ ET+D L+EGVAVFG +GR++L NPAF +W+ + L Sbjct: 455 VTESFALARRYDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDSLREHP 514 Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 HI + + C Y++S W ITS ++ R + LE SVL+ PLP+ T Sbjct: 515 HIDTVESWCRSIYDDSVAWRTIREAITSIEN-RLDVALKLERKDGSVLDCMSRPLPDGAT 573 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 MLTF ++TD+ ERAL E NEAL A ++K FV HVSYELR+PLT IIGF L Sbjct: 574 MLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPS 633 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G L KQ++Y++Y++ S+ LL L N+ILDLAT+DAG MKL + + + + Sbjct: 634 TGPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGV 693 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ + IR++V +GSFV D +R++Q+ +L+NA+ FS + STVI+ A R + Sbjct: 694 QDRLATDRIRLRVEVAPDVGSFVGDERRVVQVLYNLLANAVGFSPQDSTVIVSARRTDHS 753 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F+V + G IP D+ +F+ FVS + + RG GLGLS+V SF+ LHGG V + S Sbjct: 754 VAFAVTDCGPGIPADIKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVV 813 Query: 779 EGVTTINCRIPS 790 TT+ C P+ Sbjct: 814 GKGTTVTCDFPT 825 >gi|148251707|ref|YP_001236292.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403880|gb|ABQ32386.1| Putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 835 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/792 (34%), Positives = 429/792 (54%), Gaps = 18/792 (2%) Query: 11 GKGIE---ICTLFSCK---IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64 G G+ + TLF +A + +L +++ + L+R R + A+K + ++ Sbjct: 40 GNGVPADAVTTLFELSRQDVAEVTAMLALLGFSVVAAVALVRTRLAAARKEARLRADVAA 99 Query: 65 ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI--DIPQTDTDLLSFENWLKFH 122 + Q +Y +LL + I W P+I G + D PQ +L+F +WL Sbjct: 100 LQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTAMLVPQDQPQR---ILAFGSWLPPE 156 Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182 ++L +A + LR+ G+ F L + + AI+ GR G A +RI L G+ ELAET Sbjct: 157 PALQLDRAVDALREAGEGFLLHLTSSHGHAIEAMGRAIGGQAIVRIRELSGLRRELAETQ 216 Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L+ K L + L +L + VW R G + + N +Y + + + AI + + Sbjct: 217 LRFKALGEETESLRALAAALPWPVWARQANGALTYVNPAYARAADARDV--PDAISRNLE 274 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302 L + + + F + + G + + + S G AG+AID S+ + Sbjct: 275 LLDSADRTDLQRALGAAGRFEGRLPIVTGGERRMHDVHAFTLSNGSAGVAIDASEAAALR 334 Query: 303 DQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358 L E L L+ +A+FD R L F+N S+ LW++D AFL + P + +L+ Sbjct: 335 TALVRMAEAHRRTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSAFLDSQPDDSSVLDR 394 Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418 LR+A KLPEQ +++ WK + Y++ E KDTW LP+G+ L V+ T NP GG ++F++ Sbjct: 395 LRAARKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDD 454 Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 +T L +++ L++VQ ET+D L+EGVAVFG +GR++L NPAF +W+ ++L Sbjct: 455 VTESFALARRFDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDQLREHP 514 Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 HI + + C Y+++ W ITS ++ R + LE SVL+ PLP+ T Sbjct: 515 HIDTVESWCRSLYDDAVAWRTIREAITSIEN-RLDIALKLERKDGSVLDCMSRPLPDGAT 573 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 MLTF ++TD+ ERAL E NEAL A ++K FV HVSYELR+PLT IIGF L Sbjct: 574 MLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPS 633 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G L KQ++Y++Y++ S+ LL L N+ILDLAT+DAG MKL + + + + Sbjct: 634 TGPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGV 693 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ + IR+KV D +G+FV D +R++Q+ +L+NA+ FS + STV++ A R + Sbjct: 694 QDRLATDRIRLKVQVDPNVGTFVGDERRVVQVLYNLLANAVGFSPQDSTVLVSARRTDHS 753 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 FSV ++G IP D+ +F+ FVS + + RG GLGLS+V SF+ LHGG V + S Sbjct: 754 VAFSVTDSGPGIPPDLKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVV 813 Query: 779 EGVTTINCRIPS 790 TT+ C P+ Sbjct: 814 GKGTTVTCDFPT 825 >gi|121602765|ref|YP_989601.1| sensor histidine kinase [Bartonella bacilliformis KC583] gi|120614942|gb|ABM45543.1| sensor histidine kinase [Bartonella bacilliformis KC583] Length = 824 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/782 (36%), Positives = 436/782 (55%), Gaps = 30/782 (3%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A+ G+I+ L T I +I+ I++ + +V + + ++L +Y LL E Sbjct: 43 LALCGSISCASLLTCITVIINIKKNAEKSLQVIQ-----ANFSEKLKQYEWLLEETEQYL 97 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 ++W+ P I+G + + + + FE+WL+ +L +A +LR G SF+L Sbjct: 98 LIWEHPTALPHIVGNISKLQKAGINEQNFQCFEDWLEESFLQQLDQALTQLRCHGCSFEL 157 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 T N A+++ G ++G+ A R SE ++ + + + L D + Sbjct: 158 SITTINKIALQVTGVIAGTAAIARFQDFSKQQSENIRLREDMTRMLTELKIQRNLLDYIQ 217 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-- 261 VW R+ G I + N +++ T FQ+ F E I+ ++ + + + Sbjct: 218 EPVWIRNSEGKICFVNNAFRDMTN-----FQEGCDTITDPFNETIQFQINKGNQINERSQ 272 Query: 262 -------------FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308 F + V T+ +G + + + R+ G A A D S + +++ Sbjct: 273 TNGTNQLDETKTVFQKHVHTVVNGERRHFHLTRITTEEGMAAFARDDSAYKNLTNEMEQI 332 Query: 309 ----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 +E L ++ A+AIFD N+ L+F N +F LW ++ +FL + PS+ LLE LR Sbjct: 333 LQSHHETLDQISTAVAIFDSNQKLKFCNHAFRILWPLESSFLESEPSHTLLLERLREKGF 392 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424 + E +W+ WKE + + + E++ W+LPNG T+ V+ +P+GG W++ENLT ++D Sbjct: 393 IGEHPDWRAWKEELLTSHHQIESNPKIWNLPNGCTVRVMSRPHPQGGITWLYENLTEKID 452 Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484 LE +YNTL+K+QGET+D LSEGV VFG DGR+ LSNPA LW N L GTHI + Sbjct: 453 LERRYNTLIKIQGETLDKLSEGVVVFGTDGRLCLSNPALSKLWSLPYNLLVEGTHITQLQ 512 Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 CS + W F +IT F ++R + G ++L + +++Y+ +PLPN QTMLTFVN Sbjct: 513 THCSAL-TVGEEWKQFTQLITGFAEKRDARSGRIDLRNGMIIDYTFVPLPNGQTMLTFVN 571 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 VTD+V RAL EKNEAL D ++N FVQHVSYELR+PLTNIIGF+D+L+ GSLN Sbjct: 572 VTDTVHIARALQEKNEALESTDRLRNEFVQHVSYELRTPLTNIIGFSDILRDQMFGSLNE 631 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +Y+ +I + S LLNLVNDILDLAT+DAGIM+LN ++ + D + + I ++ Sbjct: 632 RQHEYLGHIQSESNTLLNLVNDILDLATLDAGIMELNIQSVNIVDAMAQAVTRIEEHLNG 691 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +I L AD RL QIF +LSNA++F+ + ST+ A + + +FSV Sbjct: 692 RHILFSQHISPSLDVIFADATRLHQIFVNVLSNAVNFAPEASTIEFCAHKQDNHIVFSVH 751 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 N GS IP D+ +F RF S+AH G R G GLGLS+V+SF+ LHGG+V I + TT+ Sbjct: 752 NEGSDIPSDILDRIFKRFSSHAHHGGRAGAGLGLSLVKSFVELHGGYVEILTGTGQGTTV 811 Query: 785 NC 786 C Sbjct: 812 KC 813 >gi|319406430|emb|CBI80070.1| sensor histidine kinase protein [Bartonella sp. 1-1C] Length = 820 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/773 (37%), Positives = 432/773 (55%), Gaps = 19/773 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 I +FG+IA L +I +I++I + +L K + S D+L Y LL + Sbjct: 58 IVIFGSIACSSL--LICVIVIINTKRALRKAWIMIQAHFS---DKLKHYEWLLEKTGQCL 112 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 +WD P IIG + D FE WL+ + +L +A +LR G SF+ Sbjct: 113 FIWDNPTALPRIIGNIPTLQKAGIHKKDFQHFEKWLEKSSFQQLDQALTQLRCNGCSFEF 172 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 T +++ G +SG+ A +R + SE + ++ +++ + L D + Sbjct: 173 SVMTITKIFLQVTGIISGTAAIVRFQDISAQQSENIRLQKETTQILTELNMQRNLLDHIQ 232 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 VW RD G I + N ++++ T FQ E + + ++ E F Sbjct: 233 EPVWIRDCEGKIYFTNRAFREMTN-----FQ----EKNNIVDPFNETTQCTTDETEAIFQ 283 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHNLTVAI 319 + + T+ G + + R+ G A A D S E V + L + E L ++ A+ Sbjct: 284 KHIYTVVKGERHHFHLTRITTKEGMASFARDDSAYENLVKEMKRILQNHCETLDQISTAV 343 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AIFD N+ L+F N +F LW ++++FL + PS+ LLE LR + E +W WKE +F Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLLLERLREKGFIGEHPDWHAWKEELF 403 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y+ +E+++ W+LP+G+T+ VI + +P+GG W++ENLT ++DLE +YNTL+K+QGET Sbjct: 404 KAYQQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D LSEGV VFG DGR++LSNPA LW N G HI + CS + W Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLPIEGAHITELQNHCSAL-TIGEEWKK 522 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 FA IT ++R + G ++L S +++Y++ PLPN QTMLTFVNVTD+V RAL EKN Sbjct: 523 FAQFITGCAEKRDTYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARALQEKN 582 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+ G N +Q +Y+ YI + S + Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPTNERQQEYLGYIHSESGV 642 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLN+VNDILDLAT+DAGIM L+ + + + + + + ++H +I + L Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVHIAEAMAQAVARVEERLHGRHITLSQNISPSLKF 702 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD RL QIF +L+NA++F+++ S + A + IFSV N GS IP D+ +F Sbjct: 703 MSADATRLHQIFVNVLNNAINFATEKSIIEFCANTQDDYIIFSVHNEGSDIPTDILDRIF 762 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF S+AH G R G GLGLS+V+SF+ LH G V I + TT+ C P K+ Sbjct: 763 KRFTSHAHHGGRAGAGLGLSLVKSFVELHDGRVEILTGMGQGTTVKCFFPHKK 815 >gi|304392409|ref|ZP_07374350.1| histidine kinase [Ahrensia sp. R2A130] gi|303295513|gb|EFL89872.1| histidine kinase [Ahrensia sp. R2A130] Length = 866 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 256/778 (32%), Positives = 431/778 (55%), Gaps = 41/778 (5%) Query: 44 LIRQRNSLAKKVNETYSFLS-EICDQLSKYH---SLLTENNCLTIVWDGKDETPEIIGQL 99 LIR+R +L ++++ LS E+ D +++ +LL + +VWDG++ P G L Sbjct: 82 LIRERRAL----DDSHRMLSLELADLKARHERAEALLDAPDQRVVVWDGEENPPTCRGAL 137 Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159 P D ++F W+ + A ++LR ++F++ ET+N ++ +GR Sbjct: 138 VSTSGTPSESADFVAFGTWMAPNSAQSFDHAIQRLRSSAEAFEMPIETRNGNILEAQGRA 197 Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219 GS AF+R LSL G + LA + L + L +++ VW RD+ + WAN Sbjct: 198 FGSHAFVRFLSLTGDRAALALLESQYTSLMATTDTMRTLLEAVPMPVWLRDREEGLTWAN 257 Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI----------SSSALEKNFCETVSTL 269 +Y K+ +T + +A+ ++ L + R+ ++A F + + Sbjct: 258 PAYVKSIDTADLA--QAVASNQHLLDAGDRNRVSEQLHGAHDADGNAAARTTFQKRLHAT 315 Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQN 325 G+ ++ + + + G+AG+A+D+S+ V L T + L L A+AIFD Sbjct: 316 MAGDRRTVDVTVIEHDGGQAGLAVDMSEVEQVQSDLRRTLQGHAQTLDQLATAVAIFDAG 375 Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385 + L FHN++ +LW + FL + PSN LR ++++ Q +W W+ + +V+ ++ Sbjct: 376 QKLAFHNQALADLWALAPGFLDSAPSNAAFFNELRDSDRIANQPDWAKWRGELLAVHHAT 435 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 E + WHLP+G++L VI + +GG W+FEN+T Q+++E++Y + +VQGET+DHL E Sbjct: 436 EPAEHFWHLPDGRSLRVIANPHRQGGVTWVFENITEQLEMESRYIAMTQVQGETLDHLGE 495 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--------- 496 +AVF DGR+KLSNPA + LW E+ +++ T I +A C E DG Sbjct: 496 AIAVFASDGRLKLSNPALQELWHLEDEQVAADTPIAEVARYCGEKLAE-DGTVDEPGQAE 554 Query: 497 ----WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 WD +T D R ++ G L L+ D VL+Y+++PLPN QT+L+F +V+DSV E Sbjct: 555 SAMVWDELVTGVTGVTDSRDTIDGRLHLMEDRVLDYALVPLPNGQTLLSFADVSDSVSLE 614 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L E+NEAL A +KN F++HVSYE R+PLTNI GF ++L+ G LN KQ++Y+++ Sbjct: 615 QTLLERNEALEAAQRLKNEFLEHVSYEFRAPLTNIKGFAEILQGGAFGPLNEKQAEYIDH 674 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I++SS +L LV+++LDLAT+DAG ++L+ + L D L + ++ + + + +++ Sbjct: 675 IASSSGVLHTLVDNLLDLATMDAGALELDLEQLDLADTLEAARSAVMPALKDRGLALEIN 734 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + D FV D ++ +I +L NA FS KG T+ L D + + + G IP Sbjct: 735 VEDDT--RFVGDSDQIQKILGNLLQNASRFSPKGGTIRLDGVTSGDDVVIRIADEGPGIP 792 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ ++F RF S+A R +RG GLGL++ ++ LHGG + + S+ E T CR+P Sbjct: 793 AEIRDTIFERFSSSAVRSHKRGAGLGLAVAKALCGLHGGALELDSAVEEGATFICRLP 850 >gi|90420581|ref|ZP_01228488.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335309|gb|EAS49062.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 809 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 281/793 (35%), Positives = 444/793 (55%), Gaps = 28/793 (3%) Query: 19 LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78 L I +A ++ +++ + LIRQR + A + + + L+E + LLT Sbjct: 2 LGPADILYLALVAMLIGASMLSAVFLIRQRAATATENDMLRASLAESRAEAEARTMLLTA 61 Query: 79 NNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138 +V+ G PEI+G L P + LSF +W+ ++L A LR + Sbjct: 62 GEERLLVYSGPG-APEILGALPGPAGAPVEEKRFLSFGDWMAADVALRLQTAITALRHDA 120 Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198 + F + + + I+ G+ G A +R ++L+G+ E + I + L Sbjct: 121 EPFSIEIDLPHGRLIEASGKTIGGLAVVRFVALEGLRERAREAEIASADALAMIETMQNL 180 Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSA 257 F++ VW RD+ G + W N +Y + + + + A R++ F E + I++ Sbjct: 181 FNAAPIPVWLRDRNGRLGWVNNAYAASVDAK----EAADTLERQVEFLSEQDRLTIAARL 236 Query: 258 LEKN-FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EIL 312 E+ F + +ST+ + +++ +V G AG+AIDVS+ V +L T E L Sbjct: 237 SEQAVFSDKLSTVVAADRRNFAVVEATGPLGSAGLAIDVSETEQVRMELRQTINSQSETL 296 Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNW 371 LT A+A FD L +HN +F L+++ ++L + P + LL+ LR+ LP E+L Sbjct: 297 DQLTTAVARFDDKTRLTYHNAAFQRLFDLTNSYLESEPDHLALLDHLRTRGILPVEKLFR 356 Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431 ++ + Y+++E + WHL + +TL VI T P+GG W+FE++T ++DLE++ Sbjct: 357 SEIQDQDLAAYRATEPTETMWHLADARTLRVIATPQPQGGATWIFEDITEKLDLESQVKA 416 Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCS- 488 V++Q ETID+LSE VAVFG DGR++LSNP+F L+ + + L P H + A+ + Sbjct: 417 TVQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELFGLKPDYLLSRPRIHTLSDLASVAI 476 Query: 489 -RYYNESD---------GWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQ 537 R + +D GW LF +T+FD+ R+ + G + L S + ++I+PLPN Q Sbjct: 477 RRTISSADTDGTASAVGGWPLFCQSVTAFDETRRDTETGEMILSSGRTIAFAIVPLPNGQ 536 Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TMLTF +++D+ +AER L EKNEAL +A++IKN FVQHV+YELRSPLTNIIGF+ LL+++ Sbjct: 537 TMLTFSDISDARQAERMLREKNEALEQANQIKNDFVQHVNYELRSPLTNIIGFSALLRST 596 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + G LN +QS+Y++YI+ S++ LL +VNDILDLATVDAGIM+L+ S + + + Sbjct: 597 ETGPLNERQSEYLDYIAVSTSSLLTIVNDILDLATVDAGIMELDLSEVDIVSTVEHAADG 656 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 I ++ E + ++ I K G +F+AD RL QI +LSNA +F+ G+ V + A R Sbjct: 657 IRERLEEAEVTLR-IDLAKAGETFMADSHRLTQILFNLLSNAANFAPAGTAVDVVATRGP 715 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+V + G IP D VF RF SN G+ G GLGLSIV+SF+ LH G + I S Sbjct: 716 RAISFAVTDRGPGIPADQIDRVFERFESNPAGGRHSGAGLGLSIVKSFVELHRGTICIQS 775 Query: 777 SDEGVTTINCRIP 789 + + TT+ C P Sbjct: 776 APDEGTTVICDFP 788 >gi|85714154|ref|ZP_01045143.1| Histidine kinase [Nitrobacter sp. Nb-311A] gi|85699280|gb|EAQ37148.1| Histidine kinase [Nitrobacter sp. Nb-311A] Length = 831 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/765 (34%), Positives = 419/765 (54%), Gaps = 12/765 (1%) Query: 32 GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91 G+L +++ ILL+R R A + + E+ + ++ +LL + I W ++ Sbjct: 61 GVLSFSVVAAILLMRTRIRAAANEQRLRAEIRELQSEADRFRALLFVEPQILISWGAGED 120 Query: 92 TPEIIGQLHQRIDIPQTDTD---LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148 P+I G + + +PQ +L+F WL +++ A + LR EG+ F L T Sbjct: 121 RPQISGDIA--LLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRNEGEGFLLNLVTS 178 Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208 ++ GR G A +RI L G+ +LAE TL+ L + + + + +W Sbjct: 179 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHNNLLAETEMLRTFAGAAPWPLWA 238 Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268 R + G++ +AN +Y + TE AI + +L E + M + F + Sbjct: 239 RSEDGNLSYANAAYARATEAA--GAADAIQRNLELLDSEDRIAMARALDDHAAFSARLPI 296 Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324 + G + Y + + + G AGIA+D S+ +T+ L + L L+ +A+FD Sbjct: 297 VIGGERRMYDVHALRAAGGSAGIALDASEAVTLRQTLERMADAHRRTLDQLSSGVAVFDG 356 Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384 R L F+N S+ LW++D AFL NP + +L+ LR+A KLPEQ +++ WK + Y++ Sbjct: 357 RRRLAFYNDSYRRLWDLDRAFLDGNPDDSSVLDRLRAARKLPEQPDFRAWKARLHEAYRA 416 Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444 +E KD W+LP+G+ L ++ T NP GG ++F+++T +DL +Y+ L+ VQ ET+D L+ Sbjct: 417 NEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLITVQRETLDSLT 476 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 E VAVFG +GR +L NPAF +WK L+ HI + A C ++++D W + Sbjct: 477 EAVAVFGSNGRAQLFNPAFARMWKLSAEALAQQPHIDTVEAWCKPLFDDNDAWRTIHKAV 536 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 T D+ R ++ LE SVL+ +PLP+ TMLTF ++TDS ERAL E+N+AL Sbjct: 537 TGIDN-RTAVPLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVERALRERNDALET 595 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K FV HVSYELRSPLT IIGF L+ G L KQ++YV YI++S+ LL L Sbjct: 596 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYITSSTDALLALT 655 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N+ILDLAT+DAG M L + + + + I ++ ++I + V D +G+F+ D Sbjct: 656 NNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLARDHIVLNVDVDPDIGNFIGDE 715 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 +R++Q+ +L+NA +FS + + + A R F+V + G IP D+ VF+ F S Sbjct: 716 RRIVQVLYNLLANAANFSPPNAVITVSARRTEHSVRFAVMDEGPGIPPDVKDKVFDWFES 775 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +A+ + RG GLGLS+V SF+ LHGG V S+ T + C P Sbjct: 776 HANGSRHRGAGLGLSLVRSFVELHGGRVHFDSTITSGTRVVCDFP 820 >gi|319404942|emb|CBI78544.1| sensor histidine kinase protein [Bartonella sp. AR 15-3] Length = 820 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 284/773 (36%), Positives = 432/773 (55%), Gaps = 19/773 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 I +FG+IA L +I + ++I + +L K + LSE +L +Y LL + Sbjct: 58 IVIFGSIACSSL--LICVTIIINTKRALWKSWTMIQAHLSE---KLEQYEWLLEKTGQCL 112 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 +WD P +G + D F+ WL+ +L +A +LR G SF+ Sbjct: 113 FIWDNPTALPYTVGNIPTLQKAGIYKKDFQYFDKWLEKSSLQQLDQALIELRYNGCSFEF 172 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 T +++ G ++G+ A +R + SE + ++ + + L + + Sbjct: 173 SVTTTTKILLQVTGIIAGTAAIVRFQDISVQQSENIRLQKEVTQILTELKIQHNLLEHIQ 232 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 VW RD G I + N ++++ T FQ+ + LF E + ++ E F Sbjct: 233 EPVWIRDCEGKICFTNRAFREMTN-----FQEK-NNTVDLFDETTQ---CTTDETETIFQ 283 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHNLTVAI 319 + V T+ G + + R+ G A A D S E V + L E L ++ A+ Sbjct: 284 KHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMERILQSHCETLDQISTAV 343 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AIFD N+ L+F N +F LW ++++FL PS+ LLE LR + E +W+ WKE +F Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLENEPSHSLLLEHLREKGFIGEYPDWRAWKEELF 403 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y+ +E+++ W+LP+G+T+ VI + +P+GG W++ENLT ++DLE +YNTL+K+QGET Sbjct: 404 KAYRQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D LSEGV VFG DGR++LSNP+ LW N GTHI + CS + W Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPSLSKLWSLPHNLPVEGTHITELENHCSAL-TIGEEWKQ 522 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F IT F ++R G ++L S +++Y++ PL N QTMLTF NVTD++ RAL EKN Sbjct: 523 FTQFITGFAEKRDIYSGRIDLKSGIIIDYTLTPLSNGQTMLTFANVTDTIHIARALQEKN 582 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+ GS N +Q +Y+ YI + S + Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSTNERQKEYLGYIHSESGV 642 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLN+VNDILDLAT+DAGIM L+ + + + + + + ++H +I + L Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVQIAEAMAQAVARVEERLHGRHITLLQNISPSLKF 702 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD RL QIF +LSNA++F+++ ST+ A + +FSV N GS IP D+ +F Sbjct: 703 MSADATRLHQIFVNVLSNAINFATEKSTIEFCADTQDNYIVFSVHNEGSDIPTDILDRIF 762 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF S++H G R G GLGLS+V+SF+ LH G V I + TT+ C P+++ Sbjct: 763 KRFTSHSHHGGRAGAGLGLSLVKSFVELHNGRVEIFTGMGKGTTVRCFFPNQK 815 >gi|75674244|ref|YP_316665.1| histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419114|gb|ABA03313.1| histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 838 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 259/765 (33%), Positives = 407/765 (53%), Gaps = 12/765 (1%) Query: 32 GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91 G+L +++ ILL+R R A S L E+ + ++ +LL + I W +E Sbjct: 68 GVLSFSVVAAILLMRTRIRAAANEQRLRSELRELQSEADRFRALLFVEPQILISWGAGEE 127 Query: 92 TPEIIGQLHQRIDIPQTDTD---LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148 P+I G + + +PQ +L+F WL +++ A + LR G+ F L T Sbjct: 128 RPQISGDIA--LLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRSAGEGFLLNLVTS 185 Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208 ++ GR G A +RI L G+ +LAE TL+ L + + + + +W Sbjct: 186 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHDSLLAETEMLRAFATAAPWPLWA 245 Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268 R + G + +AN +Y + TE AI + +L E + M + F + Sbjct: 246 RGKDGKLSFANQAYARATEAADSA--DAIQRNLELLDSEDRTAMSRALNDHATFAARLPI 303 Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324 + G + Y + + G AGIA+D S+ ++ L + L L+ +A+FD Sbjct: 304 IIGGERRMYDVHALRTGGGSAGIALDASEATALSGALARMADAHRRTLDQLSSGVAVFDG 363 Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384 R L F+N S+ LW++D FL +P + +L+ LR+ KLPEQ +++ WK + Y++ Sbjct: 364 QRRLAFYNDSYRRLWDLDRPFLDGHPDDSSVLDRLRAGRKLPEQPDFRAWKARLHEAYRA 423 Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444 +E KD W+LP+G+ L ++ T NP GG ++F+++T +DL +Y+ L+ VQ ET+D L+ Sbjct: 424 NEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLINVQRETLDSLT 483 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 E VAVFG +GR +L NPAF +WK L+ HI + A C +++ D W + Sbjct: 484 EAVAVFGSNGRAQLFNPAFARMWKLSPEALAQQPHIDTVEAWCKPLFDDDDAWRTIHKAV 543 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 T D+ R ++ LE S+L+ +PLP+ TMLTF ++TDS ERAL E+N+AL Sbjct: 544 TGIDN-RTAVPLKLERKDGSILDCMTMPLPDGATMLTFHDITDSENVERALRERNDALEA 602 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K FV HVSYELRSPLT IIGF L+ G L KQ++YV YI++S+ LL L Sbjct: 603 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYITSSTDALLALT 662 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N+ILDLAT+DAG M L + + + + I ++ + I + V D +G F+ D Sbjct: 663 NNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLTRDRIVLNVDVDPDIGDFIGDE 722 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 +R++Q+ +L+NA FS + + + A R F+V + G IP D+ F+ F S Sbjct: 723 RRIIQVLYNLLANAAGFSPPDAVITVSARRTEHSVRFAVMDEGPGIPPDVRDKAFDWFES 782 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A+ + RG GLGLS+V SF+ LHGG V + + T + C P Sbjct: 783 YANGSRHRGAGLGLSLVRSFVELHGGRVHFDPAIKSGTRVVCDFP 827 >gi|299133352|ref|ZP_07026547.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298593489|gb|EFI53689.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 834 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 271/773 (35%), Positives = 414/773 (53%), Gaps = 19/773 (2%) Query: 31 AGMLLTTIIPIILLIRQR---NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD 87 A +L +++ ILL+R R ++ ++ L D+L +LL + I W Sbjct: 62 ASVLCFSVVSAILLMRTRLRAEAMEAQLRADNQSLQHESDRL---RALLFAEPQVLIAWS 118 Query: 88 GKDETPEIIGQLHQRIDIPQ----TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 DE P+I G + + +PQ + +L+F WL + + A + LR+ G+SF L Sbjct: 119 AGDERPDITGDIA--LLMPQGQATSAQRVLAFGTWLLPEQALAMDHAVDALRERGESFLL 176 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 N AI+ GR G A +RI L G+ ELAE T + L + + Sbjct: 177 TMSASNGRAIEAIGRAVGGQAIVRIRELSGVRLELAEMTQRHLHLIEETDALRAFAAEIP 236 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 +W R G + + E AI +L E + M + A K + Sbjct: 237 QPLWARRANGTL--RYANAAYARAAEAANPSDAIERGVELLDSEDRAAMRHALAEGKPYR 294 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319 + G + + + + G G+AID S+ + D L + +L L+ + Sbjct: 295 ARLPVAIGGERRIFDVFAYNVTDGSVGVAIDCSETVAFKDALMRMADAHRRMLDQLSSGV 354 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 A+FD ++ L F+N S+ LW++D AFL +NPS+ +LE LR+ K+PEQ +++ WK + Sbjct: 355 AVFDADKRLAFYNDSYRRLWDLDRAFLDSNPSDSSVLEKLRAERKIPEQPDFRAWKARLH 414 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y++ E K+TW+LP+G+ + ++ T NP GG ++F+++T + L+ +++ L++VQ ET Sbjct: 415 EAYRAIEPAKETWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLKLQRQHDGLLRVQRET 474 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D+LSE VAVFG +GR +L NP F LWK L HI I C + ++ W Sbjct: 475 LDNLSEAVAVFGGNGRAQLFNPPFAQLWKLSTEALQQQPHIETIEQWCRPLFEDAATWQA 534 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A IT D R +LQ +E SVL+ + IPLP+ TML F +VTDSV ERAL E+N Sbjct: 535 IRAAITGID-SRTALQTRIERKDGSVLDCTTIPLPDGATMLAFQDVTDSVNVERALRERN 593 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +AL AD++K FV HVSYELRSPLT IIGF L G + KQS+Y+ YI+ S+ Sbjct: 594 DALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTVKQSEYLNYITTSTNA 653 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++N+ILDLAT++AG M L+ + L + E + ++ +NIR+ + D Sbjct: 654 LLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLVIDIDPSAAG 713 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F+AD +R++QIF +L+NA+ FS TV L A R+NG +V + G IP+D+ VF Sbjct: 714 FIADERRIVQIFYNLLANAIGFSPTNGTVRLNAWRENGLICCAVADAGPGIPDDVRDKVF 773 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + F S A+ + RG GLGLS+V SF+ LHGG V + S TT+ C P+ + Sbjct: 774 DWFESRANGSRHRGAGLGLSLVRSFVELHGGRVRVDSVVGEGTTVTCEFPADQ 826 >gi|27375868|ref|NP_767397.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27349006|dbj|BAC46022.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 862 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 261/760 (34%), Positives = 413/760 (54%), Gaps = 7/760 (0%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ ILL+R R AK + + E+ Q ++ +LL + I W D +I Sbjct: 98 SVMAAILLMRTRVRTAKNEARLRARIGELQLQADRFGALLFAEPQILISWPAGDNRAQIS 157 Query: 97 GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE 156 G + + + +L+F WL +++ A + LR G F L T + ++ Sbjct: 158 GDVSMVLPRDSSPQRVLAFGTWLPPEPALQMDHAVDALRDRGDGFQLTLTTAHGHTLEAI 217 Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216 GR G A +RI L G+ +LAET L+ K LS+ + + + + +W + + G + Sbjct: 218 GRAIGGQAIVRIRELSGLRRDLAETNLRYKALSDETEMLRGFAAAAPWPIWAKGENGALT 277 Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276 +AN +Y + TE F A +L + M NF + + G + Sbjct: 278 FANPAYVRATEAAS--FSDAHERKLELLDSADRGAMERGLKDAANFTSRLPIVIGGERRI 335 Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332 Y + V G G+AID S+ ++ L E L L+ +A+FD +R L F+N Sbjct: 336 YDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRTLDQLSSGVAVFDGHRRLAFYN 395 Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392 S+ LW++D FL NP + +L+ LR+A KLPEQ +++ WK + Y++ E KDTW Sbjct: 396 DSYRRLWDLDRTFLDANPDDSSVLDQLRAARKLPEQPDFRAWKAKLHEAYRAVEAAKDTW 455 Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452 +LP+G+ L V+ T NP GG ++F+++T ++L +++ +++VQ ET+D L+EGVAVFG Sbjct: 456 YLPDGRALSVVTTPNPEGGVTYLFDDVTESLELARRFDGMIRVQRETLDSLAEGVAVFGS 515 Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512 +G+ +L NPAF +WK + + HI+ + C + +++ W +TS + R Sbjct: 516 NGKAQLFNPAFVRMWKLSSDAMRDEPHIQTVEGWCHQLFDDPVVWRQIREAVTSIE-SRA 574 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572 + L+ SVL+ I PL + TMLTF ++TD+ ERAL E+NEAL AD++K F Sbjct: 575 DVPLKLDRKDGSVLDGMIRPLHDGATMLTFQDITDTENVERALRERNEALEAADQMKVDF 634 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 V HVSYELRSPLT IIGF L G L KQ++Y++Y++ S+ LL L N+ILDLAT Sbjct: 635 VHHVSYELRSPLTTIIGFAHFLSDPSTGPLTPKQAEYLDYVTKSTNALLALTNNILDLAT 694 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 +DAG MKL + ++ + + I ++ + IR+KV +GSF+ D +R++Q+ Sbjct: 695 IDAGAMKLELGPVDVSKTIELAAEGIQDRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLY 754 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 +L+NA+ FS + STV + A R +F+V ++G IP DM VFN F S + + R Sbjct: 755 NLLANAVGFSPQDSTVGISARRTEHSVVFTVTDSGPGIPADMKDKVFNWFESRSQGSRHR 814 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGLS+V SF+ LHGG V + S T + C P+ + Sbjct: 815 GAGLGLSLVRSFVELHGGKVRVDSIVGRGTVVICDFPTDQ 854 >gi|298290314|ref|YP_003692253.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296926825|gb|ADH87634.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 839 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 255/764 (33%), Positives = 408/764 (53%), Gaps = 8/764 (1%) Query: 30 IAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK 89 + G+++ I+ +R R ++ + +S + Q+ + +LL + +VW Sbjct: 69 VVGLIVFATTTAIVHLRYRRQSLRREMAAFGEISRLEAQIDEARALLMAEPQIVVVWRDP 128 Query: 90 DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149 PEIIG + +L+F +WL ++ A ++LR G TQ+ Sbjct: 129 AADPEIIGNTPAFTGV-AAPARILAFGSWLTPASAREIEAAVDRLRGRGTPLAATLATQD 187 Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209 ++ +GR G+ LR+ + G+ + A+ + L S + L D+L W Sbjct: 188 GRFVEADGRPVGAAVVLRLRDITGVRLDQAQLEAAYRALDAESSALRTLLDALPAPAWVD 247 Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269 + G + W+N +Y E A L ++ + + + A F + + Sbjct: 248 GEDGRLRWSNAAYAHAVEARDA--SDAASRGLMLLDQQSRTQAEKAHAASLPFKARLPVV 305 Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQN 325 G + ++ V G AGIA+D ++ V +L L L A+AIF + Sbjct: 306 VAGTRRVLDVLEVPAGGGAAGIALDATEAEVVRAELAQVVGAHRRTLDQLATAVAIFGAD 365 Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385 + L FHN ++ L+++D AFL P++ +L+ LR+A +LPEQ +++ W+E + + Y++ Sbjct: 366 QRLVFHNAAYARLFDLDAAFLDDRPTDGAVLDRLRAARRLPEQADFRLWREELHAAYRAI 425 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 E + WHLP G+TL V+ NP GG ++F+ +T ++ LE+++N+L ++Q ET+D L+E Sbjct: 426 EPREHWWHLPGGRTLRVVTAPNPEGGITYLFDEVTERLALESRFNSLTRIQSETLDALAE 485 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 VAVFG DGR+ L N AFR LW+ + L HI +AA C ++ W A +T Sbjct: 486 AVAVFGSDGRLGLVNSAFRRLWQLDAAMLDAHPHIDAVAAACRPLTADAAVWARLTATVT 545 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 + R + +E ++L+ S PLP+ T++T +VTDSV ERAL E+N+AL A Sbjct: 546 GIE-ARMPTEFRMERNDRTILDGSTQPLPDGATLVTLRDVTDSVNVERALVERNDALVAA 604 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K++FV HVSYELRSPLT IIGF LL + +G LN KQ YV +I+ SS LL ++N Sbjct: 605 DHLKSTFVSHVSYELRSPLTTIIGFAQLLDDTGIGPLNVKQRAYVNHITESSAALLAIIN 664 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDLAT+DAG M L + + + ++ + + ++ E IR+ + GSF AD + Sbjct: 665 DILDLATIDAGSMALELTEVDVRAAMDAAAEGVRDRLAEGGIRLSIELQNAAGSFRADAK 724 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 R+ QI +LSNA+ F+ +GSTV L A R IF V++ G +P ++ F+RF S+ Sbjct: 725 RVRQILYNLLSNAVGFAPEGSTVTLSAERREDGVIFRVRDMGPGVPPEIGARAFDRFESH 784 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RGVGLGLSIV S + LHGG VS++ + G T + C P Sbjct: 785 TAGSRHRGVGLGLSIVRSLVALHGGTVSLAPAQGGGTLVTCIFP 828 >gi|92115685|ref|YP_575414.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91798579|gb|ABE60954.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 838 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 260/765 (33%), Positives = 418/765 (54%), Gaps = 12/765 (1%) Query: 32 GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91 G+L +++ ILL+R R A + + E+ ++ +LL + I W ++ Sbjct: 68 GVLGFSVVAAILLMRTRIRAAANEQRLRTEIRELQSDADRFRALLFAEPQVLISWGAGED 127 Query: 92 TPEIIGQLHQRIDIPQ---TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148 P+I G + + +PQ +L+F WL +++ A + LR G+ F L T Sbjct: 128 RPQISGDIA--LLLPQDAKPPLRILAFGTWLPPEPALQMDHAVDALRNAGEGFLLNLVTS 185 Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208 ++ GR G A +RI L G+ +LAETTL+ L + + + + +W Sbjct: 186 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAETTLRHNSLLAETGMLRAFAAAAPWPLWA 245 Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268 R + G++ +AN +Y + TE AI + +L + + M + F + Sbjct: 246 RGEDGNLNFANAAYARATEAASAT--DAIQRNLELLDSDDRIAMARALNDHAAFAARLPV 303 Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324 + G + Y + + + G AGIA+D S+ ++ L + L L+ +A+FD Sbjct: 304 VIGGERRMYDVHALRAAGGSAGIALDASETAALSQALERMADAHRRTLDQLSSGVAVFDG 363 Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384 R L F+N S+ LW++D AFL NP++ +L+ LR+A KLPEQ +++ WK + Y++ Sbjct: 364 QRRLAFYNDSYRRLWDLDRAFLDGNPNDSSVLDRLRAARKLPEQPDFRAWKARLHEAYRA 423 Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444 +E KD W+LP+G+ L ++ T NP GG ++F+++T ++L +Y+ L+ VQ ET+D L+ Sbjct: 424 NEAAKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLELARRYDRLITVQRETLDSLT 483 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 E VAVFG +GR +L NPAF +WK LS HI + C +++ D W + Sbjct: 484 EAVAVFGSNGRAQLFNPAFARMWKLSPEALSQQPHIDTVEGWCKPLFDDDDAWQTIRNAV 543 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 T D+ R +++ LE SVL+ +PLP+ TMLTF ++TDS ERAL E+N+AL Sbjct: 544 TGIDN-RSAVRLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVERALRERNDALET 602 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K FV HVSYELRSPLT IIGF L+ G L KQ+QY++YI++S+ LL L Sbjct: 603 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAQYIDYITSSTDALLALT 662 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N+ILDLAT+DAG M L + + + + I ++ I ++V D +G+F+ D Sbjct: 663 NNILDLATIDAGAMTLELGPVDVRKTIAAATEGIQDRLTRERIVLEVDVDPDIGNFIGDE 722 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 +R++Q+ +L+NA FS +G+ + + A R F+V ++G IP ++ VF+ F S Sbjct: 723 RRIIQVLYNLLANAAGFSPQGAVIAVSARRTAHSVSFAVTDDGPGIPPEVKDKVFDWFES 782 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A+ + RG GLGLS+V SF+ LHGG V + + T + C P Sbjct: 783 RANGSRHRGAGLGLSLVRSFVELHGGRVHFDPTVKRGTRVVCDFP 827 >gi|2801651|gb|AAB97416.1| putative sensor protein [Bradyrhizobium japonicum] Length = 873 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 264/790 (33%), Positives = 424/790 (53%), Gaps = 11/790 (1%) Query: 10 IGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69 +G E+ ++ V T +L +++ ILL+R R AK + + E+ Q Sbjct: 80 VGTLSELLDFNRQELVVLVTALALLGFSVMAAILLMRTRVRTAKNEARLRARIGELQLQA 139 Query: 70 SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129 ++ +LL + I W D +I G + + + +L+F WL +++ Sbjct: 140 DRFGALLFAEPQILISWPAGDNRAQISGDVSMVLPRDSSPQRVLAFGTWLSPEPALQMDH 199 Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189 A + LR G F L T + ++ GR G A +RI L G+ +LAET L+ K LS Sbjct: 200 AVDALRDRGDGFQLTLTTAHGHTLEAIGRAIGGQAIVRIRELSGLRRDLAETNLRYKALS 259 Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEE 247 + + + + + +W + + G + +AN +Y + TE V ++ + L Sbjct: 260 DETEMLRGFAAAAPWPIWAKGENGALTFANPAYVRATEAASFSDVHER---HASSLLDSA 316 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307 + M NF + + + + Y + V G G+AID S+ ++ L Sbjct: 317 DRGAMERGLKDAANFTSRLPIVIAASARIYDVRAVNVGSGSVGVAIDASEADALSSALVR 376 Query: 308 TYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 E L L+ +A+FD +R L F+N S+ LW++D FL NP + +L+ LR+A Sbjct: 377 MAEAHRRTLDQLSSGVAVFDGHRRLAFYNDSYRRLWDLDRTFLDANPDDSSVLDQLRAAR 436 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 KLPEQ +++ WK + Y++ E KDTW+LP+G+ L V+ T NP GG ++F+++T + Sbjct: 437 KLPEQPDFRAWKAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDVTESL 496 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +L +++ +++VQ ET+D L+EGVAVFG +G+ +L NPAF +WK + + HI+ + Sbjct: 497 ELARRFDGMIRVQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQTV 556 Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543 C + +++ W +TS + R + L+ SVL+ I PL + TMLTF Sbjct: 557 EGWCHQLFDDPVVWRQIREAVTSI-ESRADVPLKLDRKDGSVLDGMIRPLHDGATMLTFQ 615 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD+ ERAL E+NEAL AD++K FV HVSYELRSPLT IIGF L G L Sbjct: 616 DITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLT 675 Query: 604 SKQSQYVEYISASSTIL-LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ++Y++Y++ S+ L L L N+ILDLAT+DAG MKL + ++ + + I ++ Sbjct: 676 PKQAEYLDYVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGIQDRL 735 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + IR+KV +GSF+ D +R++Q+ +L+NA+ FS + STV + A R +F+ Sbjct: 736 ATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEHSVVFT 795 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V ++G IP DM VFN F S + + RG GLGLS+V SF+ LHGG V + S T Sbjct: 796 VTDSGPGIPADMKDKVFNWFESRSQGSRHRGAGLGLSLVRSFVELHGGKVRVDSIVGRGT 855 Query: 783 TINCRIPSKE 792 + C P+ + Sbjct: 856 VVICDFPTDQ 865 >gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 843 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 259/768 (33%), Positives = 412/768 (53%), Gaps = 22/768 (2%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ ILL+R R A + + + ++ +LL + + I W D P+I Sbjct: 72 SVVAAILLMRTRLRAAACETRLRGNIQTLQVEADRFRALLFAESQVLIAWAAGDSRPQIS 131 Query: 97 GQLHQRIDIPQT---------DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET 147 G + + IPQ +L+F W+ +K+ A + L + G+ F L T Sbjct: 132 GDVS--LLIPQAGLAADQSVQSQRILAFGTWMPPEPALKMDHAVDALLESGEGFQLNLVT 189 Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207 +I+ GR G A +R+ L G+ ELAE T + K L + + + + +W Sbjct: 190 STGRSIEAVGRAVGGQAIVRMRELSGLRRELAEMTQRHKTLQEETEMLRDFAAAAPWPIW 249 Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE--KNFCET 265 R AG++ +AN +Y + TE + +AI + +L E R S AL NF Sbjct: 250 TRRDAGELNFANAAYARATEAGSVA--EAIERNLELL--ESNDRTALSRALNDNANFSAR 305 Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI 321 + + G + Y + + G AG AID S+ + L E L L+ +A+ Sbjct: 306 LPIVVRGERRIYDVHAMKVRGGSAGAAIDASEAYALGAALVRMAEAHRRTLDQLSSGVAV 365 Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 FD+ L F+N S+ LW++D AFL +NP + +L+ LR+A KLPEQ N++ WK + Sbjct: 366 FDEQHRLAFYNDSYRRLWDLDRAFLDSNPDDSSVLDRLRAARKLPEQPNFREWKMRLHEA 425 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 Y++ + KD W+LP+G+ + ++ T NP GG ++F+++T ++L +++ L+ VQ ET+D Sbjct: 426 YRAVDPAKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLELARRFDGLINVQRETLD 485 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 +L+E VAVFG +G +L NP F +W L HI + C +++ W Sbjct: 486 NLAEAVAVFGSNGCARLFNPPFARMWNLSPEALQLQPHIETVVDWCRPLFDDPAIWQTLR 545 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 IT ++ R ++ LE SVL +PLP+ TMLTF ++TD+ ERAL E+NEA Sbjct: 546 GAITGIEN-RIAIPLKLERRDGSVLNCMTMPLPDGATMLTFQDITDTENVERALRERNEA 604 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L AD++K FV HVSYELRSPLT IIGF L G L KQ +Y+ YI+ S+ LL Sbjct: 605 LETADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLTEKQEEYLSYITTSTNALL 664 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++N+ILDLAT+DAG M LN + + + + + I ++ ++I ++V + +G F+ Sbjct: 665 AIINNILDLATIDAGAMTLNLGQVDIRKAIADAIEGIQDRLARDHIVLEVNAAPDVGHFI 724 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +R++Q+ +L+NA+ FS + + + L A R +F+V + G IP D+ + VF+ Sbjct: 725 ADERRVVQVLYNLLANAVGFSPQHAAITLSAKRTEQTVVFTVTDTGPGIPPDVKEKVFDW 784 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F S ++ + RG GLGLS+V SF+ LHGG+V I S TT+ C P Sbjct: 785 FESRSNGSRHRGAGLGLSLVRSFVELHGGNVRIDSVVGKGTTLTCSFP 832 >gi|218508683|ref|ZP_03506561.1| probable two-component sensor histidine kinase protein [Rhizobium etli Brasil 5] Length = 314 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 215/314 (68%), Positives = 258/314 (82%) Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427 QLNWK+WKE SVY++ +T D WHLPNGQTL V T++P+GG W+FENLT QVDLET Sbjct: 1 QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 60 Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 +YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW E PGTHIR + C Sbjct: 61 RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEAC 120 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 + Y+ DGW FA +ITSFDDER+S QGTLEL S VL+Y++IPLPNAQTMLTFVN+TD Sbjct: 121 APSYDRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTD 180 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 SVRAERALTEKNEALRKADE+KN FVQHVSYELRSPLTNIIGFTDLL+T +G LN +Q+ Sbjct: 181 SVRAERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQA 240 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+++IS SS++LL LVNDILDLATVDAGIM+LNY+ I LNDLL++V IA ++ E+ + Sbjct: 241 EYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGV 300 Query: 668 RIKVISDGKLGSFV 681 +++ + LGS V Sbjct: 301 ALEITAPAYLGSIV 314 >gi|115522493|ref|YP_779404.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516440|gb|ABJ04424.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 843 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 259/770 (33%), Positives = 418/770 (54%), Gaps = 14/770 (1%) Query: 31 AGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90 AG+L +++ ILL+R R A + + + ++ +LL + I W D Sbjct: 66 AGVLGFSVLATILLMRTRLRAAANEARLRGEVQTLQAEADRFRALLFAEPQVLISWAAGD 125 Query: 91 ETPEIIGQLHQRID---IPQTDT----DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143 P+I G + I +PQ T +L+F W+ +++ A + L + G+ F L Sbjct: 126 SHPQISGDISLLIPPAMLPQDPTLQPQRVLAFGTWMPPEPALRMDHAVDALLESGEGFLL 185 Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203 T +I+ GR G A +RI L G+ ELAETT + K L + + + Sbjct: 186 HLVTAGGRSIEAMGRAVGGQAIVRIRELSGLRRELAETTQRYKSLQEETEMLRDFVFAAP 245 Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 + +W R G + +AN +Y + +E I A+ +S +L + + + A +F Sbjct: 246 WPIWTRRADGALTFANAAYARASEAASIT--DAVTQSVELLDSSDRAAVARALADGTSFN 303 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319 + + G + + + G AGIAID ++ + L + L L+ + Sbjct: 304 ARLPIVVGGERRIFDVYAQKVRGGSAGIAIDANEAAALAAALVRMADAHRRTLDQLSSGV 363 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 A+FD + L F+N S+ LW++D FL +NP + +L+ LR+A KLPEQ +++ WK + Sbjct: 364 AVFDAQQRLAFYNDSYRRLWDLDRVFLDSNPDDSSVLDRLRAARKLPEQPDFRAWKTRLH 423 Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 Y++ + KD W+LP+G+TL ++ T NP GG ++F+++T DL +Y L+ VQ ET Sbjct: 424 EAYRAVDAVKDVWYLPDGRTLSMVTTPNPEGGVTYLFDDVTESFDLARRYGALINVQRET 483 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D+L+E VAVFG +G +L NP F LW L HI + C +++ W Sbjct: 484 LDNLTEAVAVFGSNGCAQLFNPPFARLWNLSPEALQLQPHIETVIGWCRPLFDDDAIWQT 543 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 + IT ++ R ++ L+ SVL + +PLP+ TMLTF + TD+ ERAL E+N Sbjct: 544 LRSAITGIEN-RVAVPLKLQRSDGSVLACTTMPLPDGATMLTFQDNTDTENVERALRERN 602 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL AD++K FV HVSYELRSPLT IIGF L + G L KQ++Y+ YI+ S+ Sbjct: 603 EALETADQMKVKFVHHVSYELRSPLTTIIGFAHFLADASTGPLTEKQAEYLSYITTSTNA 662 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++N+ILDLAT+DAG M LN + + ++ + I ++ ++IR+++ D ++G Sbjct: 663 LLAIINNILDLATIDAGAMALNLGPVDIRKAIDAAVEGIQDRLARDHIRLEIEVDPEIGR 722 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F+AD +R++Q+ +L+NA+ FS + + LKAAR + +F+V + G IP ++ VF Sbjct: 723 FLADERRVVQVLYNLLANAVGFSPEHGAITLKAARSEKEVVFTVIDKGPGIPPEVKDKVF 782 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F S++ + RG GLGLS+V SF+ LHGG V ++S TT+ C P Sbjct: 783 DWFESHSKGSRHRGAGLGLSLVRSFVELHGGKVEVNSVLGQGTTLTCSFP 832 >gi|91974689|ref|YP_567348.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91681145|gb|ABE37447.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 837 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 252/775 (32%), Positives = 419/775 (54%), Gaps = 12/775 (1%) Query: 23 KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82 ++ A +L +++ ILL+R R A + + + + + + ++ +LL + Sbjct: 56 ELVTLAMAASVLGFSVVSAILLMRTRQRAAAQEAQLRADVQTLQAESDRFRALLFAEPQV 115 Query: 83 TIVWDGKDETPEIIGQ----LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138 I W D+ P+I G L Q + Q +L+F WL +++ A + L +G Sbjct: 116 LISWSAGDDRPQISGDTALLLPQEVANAQPQR-VLAFGTWLPPEPALQMDHAVDALLDKG 174 Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198 ++F L T +I+ GR G A LRI L GI ELA+ + + K L + + + Sbjct: 175 EAFLLHLTTSTGRSIEAMGRAIGGQAILRIRELSGIRRELADMSRRFKSLQDESEMLRGF 234 Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258 ++ + +W R +G++ +AN +Y + T+ A+ + +L + + + Sbjct: 235 ANAAPWPIWTRRASGELSFANAAYARATDAGSAA--DAVNRNLELLDSNDRGNLARALND 292 Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHN 314 F + + G + + + + S G AGIA+D S+ + L E L Sbjct: 293 NAQFAARLPIVVSGERRYFDVRALRLSGGSAGIAVDASEAAALGAALVRMAEAHRRTLDQ 352 Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 L+ +A+FD R L F+N S+ LW++D AFL +NP + +++ LR+A KLPE+ +++ W Sbjct: 353 LSSGVAVFDAQRRLAFYNDSYRRLWDLDRAFLDSNPDDSSVIDRLRAARKLPEERDFREW 412 Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434 K+ + Y++ E K W+LP+G+ + ++ T N GG ++F+++T ++L+ +Y L+ Sbjct: 413 KKKLHEAYRAVEPEKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLELQRRYGGLID 472 Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 VQ ET+D+L+E VAVFG +G +L NPAF +W L+ HI + C ++++ Sbjct: 473 VQRETLDNLTEAVAVFGSNGCAQLFNPAFTRMWNLSPEALNNRPHIETVEEWCRPLFDDA 532 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 W + IT DD RK + LE +VL +PLP+ TMLTF++++D+ ERA Sbjct: 533 VSWQALRSAITGIDD-RKHVLLKLERKDGTVLSCKTMPLPDGATMLTFLDISDTENVERA 591 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+NEAL AD IK FV HVSYELRSPLT IIGF LL G LN KQS+Y+ YI+ Sbjct: 592 LRERNEALETADRIKVDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYIT 651 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S+ L+ ++N+ILDLA++DAG M LN I + ++ + I ++ + I + V D Sbjct: 652 SSTNALMAIINNILDLASIDAGAMTLNLGPIDIGRAIDAAAEGIQDRLARDQITLDVEID 711 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +G FV D +R++Q+ +L+NA+ FS +TV L + +F+V + G I ++ Sbjct: 712 PAVGEFVGDERRVVQVLYNLLANAVGFSPNQATVTLVVHKIGAKVVFTVTDAGPGIAPEL 771 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+ F S++ + RG GLGL++V SF+ LHGG V + S T++ C P Sbjct: 772 KDKVFDWFESHSQGSRHRGPGLGLALVRSFVELHGGKVQVDSVVGRGTSVICEFP 826 >gi|86747750|ref|YP_484246.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570778|gb|ABD05335.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 837 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/763 (33%), Positives = 411/763 (53%), Gaps = 16/763 (2%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ ILL+R R A + + + + + ++ +LL + I W D+ P+I Sbjct: 70 SVMSAILLMRTRQRAAAQEARLRAEVQTLQAESDRFRALLFAEPQVLISWSAGDDRPQIS 129 Query: 97 GQLHQRID------IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150 G + + PQ +L+F WL +++ A + L +G++F L T Sbjct: 130 GDIALLLPNDAHGGQPQR---VLAFGTWLPPEPALQIDHAVDALLDKGEAFLLHLTTSTG 186 Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210 AI+ GR G A LRI L G+ ELA+ + + K L + + + D+ + +W R Sbjct: 187 RAIEAMGRAVGGQAILRIRELSGVRRELADMSRRFKMLQDETDMLRGFADAAPWPIWTRR 246 Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270 +G++ +AN +Y + + A+G + +L + + + A + F + + Sbjct: 247 ASGELNFANAAYARAADAS--SPADAVGRNLELLDSTDRGNLARALAEDSEFAARLPIVV 304 Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G + + + + G AG+A+D S+ + L E L L+ +A+FD R Sbjct: 305 AGERRYFDVRALRLKGGSAGMAVDSSEAAALGAALVRMAEAHRRTLDQLSSGVAVFDAQR 364 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 L F+N S+ +LW++D FL ++P + +L+ LR+A KLPE+ +++ WK + Y++ E Sbjct: 365 RLAFYNDSYRKLWDLDRTFLDSHPDDSSVLDRLRAARKLPEERDFREWKNRLHEAYRAVE 424 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 K W+LP+G+ + ++ T N GG ++F+++T +DL+ +Y L+ VQ ET+D+LSE Sbjct: 425 ADKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLDLQRRYGGLIDVQRETLDNLSEA 484 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 VAVFG +G +L NPAF +W L+ HI + A C Y++ W IT Sbjct: 485 VAVFGSNGCAQLFNPAFTRMWNLSPEALNDRPHIETVEAWCRPLYDDDASWQALRGAITG 544 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 DD RK + LE +VL +PLP+ TMLTF +++D+ ERAL E+NEAL AD Sbjct: 545 IDD-RKQVALKLERKDGTVLSCKTMPLPDGATMLTFQDISDTENVERALRERNEALETAD 603 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 IK FV HVSYELRSPLT IIGF LL G LN KQS+Y+ YI++S+ LL ++N+ Sbjct: 604 RIKIDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYITSSTNALLAIINN 663 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDLA++DAG M LN I + + + I ++ + I + + +D +G FV D +R Sbjct: 664 ILDLASIDAGAMTLNLGPIEIRRTIAAAAEGIQDRLARDQITLDIDTDPAIGEFVGDERR 723 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++Q+ +L+NA+ FS +TV L + + +F+V + G I + VF+ F S++ Sbjct: 724 VVQVLYNLLANAIGFSPNEATVKLVVRKKGTNVVFTVTDAGPGIAPALKDKVFDLFESDS 783 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RG GLGL++V SF+ LHGG V + S T++ C P Sbjct: 784 QGSRHRGPGLGLALVRSFVELHGGKVEVDSVVGHGTSVICEFP 826 >gi|39933159|ref|NP_945435.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39652784|emb|CAE25523.1| sensor histidine kinase with multiple PAS domains [Rhodopseudomonas palustris CGA009] Length = 848 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/763 (33%), Positives = 400/763 (52%), Gaps = 16/763 (2%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ I+L+R R + + L + + ++ +LL + I W D P++ Sbjct: 81 SVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVS 140 Query: 97 GQ------LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150 G L + PQ +L+F WL +++ A + L +G+ F L T N Sbjct: 141 GDTALFLPLETQSRQPQR---VLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNG 197 Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210 +I+ GR G A +RI L G+ ELA+ T + K L + + + + +W R Sbjct: 198 RSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRR 257 Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270 G + +AN +Y + T+ AIG + +L + + + + + + Sbjct: 258 SDGTLSFANAAYARATDAS--DAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVV 315 Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G + Y + + S G AGIA+D ++ + L + L L+ +A+FD R Sbjct: 316 GGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQR 375 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 L F+N S+ +LW++D FL ++P + +L+ LR+ KLPE+ ++K WK + Y++ E Sbjct: 376 RLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVE 435 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 KD W+LP+G+ + ++ T NP GG ++F+++T +DL+ +Y L+ VQ ET+D+LSE Sbjct: 436 AEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEA 495 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 VAVFG +G +L NP F +W L HI I C +++ W IT Sbjct: 496 VAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITG 555 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 DD R L +E SVL +PLP+ TMLTF ++TD+ ERAL E+NEAL AD Sbjct: 556 IDDRRHVLL-KIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETAD 614 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 IK FV HVSYELRSPLT IIGF L S G L KQ++YV YI+ S+ L+ ++N+ Sbjct: 615 RIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINN 674 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDLA++DAG M LN I + ++ + I ++ + I +++ D + SFV D +R Sbjct: 675 ILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERR 734 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++Q+ +L+NA+DFS TV L R F+V ++G I + +F+ F S+ Sbjct: 735 VVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP 794 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RG GLGLS+V SF+ LHGG V + S+ T++ C P Sbjct: 795 QGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFP 837 >gi|192288515|ref|YP_001989120.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282264|gb|ACE98644.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 837 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/763 (33%), Positives = 400/763 (52%), Gaps = 16/763 (2%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ I+L+R R + + L + + ++ +LL + I W D P++ Sbjct: 70 SVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVS 129 Query: 97 GQ------LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150 G L + PQ +L+F WL +++ A + L +G+ F L T N Sbjct: 130 GDTALFLPLETQSRQPQR---VLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNG 186 Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210 +I+ GR G A +RI L G+ ELA+ T + K L + + + + +W R Sbjct: 187 RSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRR 246 Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270 G + +AN +Y + T+ AIG + +L + + + + + + Sbjct: 247 SDGTLSFANAAYARATDAS--DAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVV 304 Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G + Y + + S G AGIA+D ++ + L + L L+ +A+FD R Sbjct: 305 GGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQR 364 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 L F+N S+ +LW++D FL ++P + +L+ LR+ KLPE+ ++K WK + Y++ E Sbjct: 365 RLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVE 424 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 KD W+LP+G+ + ++ T NP GG ++F+++T +DL+ +Y L+ VQ ET+D+LSE Sbjct: 425 AEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEA 484 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 VAVFG +G +L NP F +W L HI I C +++ W IT Sbjct: 485 VAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITG 544 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 DD R L +E SVL +PLP+ TMLTF ++TD+ ERAL E+NEAL AD Sbjct: 545 IDDRRHVLL-KIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETAD 603 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 IK FV HVSYELRSPLT IIGF L S G L KQ++YV YI+ S+ L+ ++N+ Sbjct: 604 RIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINN 663 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDLA++DAG M LN I + ++ + I ++ + I +++ D + SFV D +R Sbjct: 664 ILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERR 723 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++Q+ +L+NA+DFS TV L R F+V ++G I + +F+ F S+ Sbjct: 724 VVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP 783 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RG GLGLS+V SF+ LHGG V + S+ T++ C P Sbjct: 784 QGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFP 826 >gi|316931476|ref|YP_004106458.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599190|gb|ADU41725.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 837 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 253/760 (33%), Positives = 398/760 (52%), Gaps = 10/760 (1%) Query: 37 TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96 +++ I+L+R R A + + L + + ++ +LL + I W D P I Sbjct: 70 SVMSAIMLVRTRQRAAAREAGLRADLQGLQAESDRFQALLFAEPQVLISWIAGDSRPRIS 129 Query: 97 GQLHQRIDI-PQTDTD--LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153 G + PQ+ +L+F WL +++ A + L +G+ F L T N +I Sbjct: 130 GDTALFLPAEPQSRQPQRILAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSI 189 Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213 + GR G A +RI L G+ ELA+ T + K L + + + + +W R G Sbjct: 190 EAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRADG 249 Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273 + +AN +Y + T+ AIG + +L + + S F + + G Sbjct: 250 TLSFANAAYARATDAS--DAADAIGRNLELLDTGDRAALARSLGDSAEFTGRLPIVVGGE 307 Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329 + + + + G AGIA+D ++ + L + L L+ +A+FD R L+ Sbjct: 308 RRYFDVRALKVPGGSAGIAVDATETAALGVALERMADAHRRTLDQLSSGVAVFDAQRRLK 367 Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389 F+N S+ +LW++D FL ++P + +L+ LR+ KLPE+ ++K WK + Y++ E K Sbjct: 368 FYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEADK 427 Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 D W+LP+G+ + ++ T NP GG ++F+++T +DL+ +Y L+ VQ ET+D+LSE VAV Sbjct: 428 DVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAV 487 Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509 FG +G +L NP F +W + HI I C +++ W IT DD Sbjct: 488 FGSNGCAQLFNPPFVRMWNLSAEAMQSQPHIEAIETWCRPLFDDDVFWQALRGAITGIDD 547 Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569 R L LE SVL +PLP+ TMLTF ++TD+ ERAL E+NEAL AD IK Sbjct: 548 RRHVLL-KLERKDGSVLACKTMPLPDGATMLTFQDLTDTENVERALRERNEALETADRIK 606 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 FV HVSYELRSPLT IIGF L S G L KQ++YV YI+ S+ L+ ++N+ILD Sbjct: 607 IDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTDKQAEYVNYITTSTNALMAIINNILD 666 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689 LA++DAG M LN I + ++ + I ++ + I ++V D ++ FV D +R++Q Sbjct: 667 LASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQVDVDPEIDRFVGDERRVVQ 726 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 + +L+NA+DFS TV L R F+V + G I +F+ F S+ Sbjct: 727 VLYNLLANAVDFSPPQGTVRLTVRRGETRVAFTVADAGPGIAPAFKDRMFDLFESDPQGS 786 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RG GLGLS+V SF+ LHGG V + S+ T++ C P Sbjct: 787 RHRGAGLGLSLVRSFVELHGGKVEVESTVGRGTSVTCEFP 826 >gi|182677583|ref|YP_001831729.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633466|gb|ACB94240.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 903 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/510 (42%), Positives = 329/510 (64%), Gaps = 6/510 (1%) Query: 287 GEAGIAIDVS-----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341 G G+A DVS + + V H L LT A+AIFD+ + L FHN ++ +LW + Sbjct: 375 GAVGMASDVSELEAMRSVNVQQAEAHA-RTLDQLTTAVAIFDRTKRLVFHNTAYRQLWAL 433 Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401 D A+L P++ E+L+ LR A+ LPEQ+++++WK+++FS Y++ ET + W+LP+G+TL Sbjct: 434 DQAWLDQGPTDAEILDRLRMAHLLPEQVDFRSWKQDLFSAYQALETREQLWYLPDGRTLR 493 Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461 ++T NP+GG ++F++ T + LE+++N ++VQ ET+D L EGVAVFG DGR+KL NP Sbjct: 494 SVITPNPQGGVTYLFDDTTERFHLESRFNAAIRVQSETLDTLQEGVAVFGSDGRLKLFNP 553 Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521 AF +LWK E L HI +A+ C+ E WD ++ DER L+ L Sbjct: 554 AFAALWKLEPEALGGEPHIDKVASLCAPLLVEQTAWDNLRTVVAGLLDERLGLENRLTRQ 613 Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 SVL+Y+ PLP+ T++TF+++T SV ERALTE+N+AL A++++N FV HVSYELR Sbjct: 614 DGSVLDYAAAPLPDGATLITFIDMTASVNVERALTERNQALLDAEKLRNDFVHHVSYELR 673 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 SPLTNIIGF ++L +G LN KQ +Y+ Y+ ASS+ L ++NDILDLA++DA M L+ Sbjct: 674 SPLTNIIGFIEMLGEGAVGPLNEKQHEYIGYVMASSSALRAIINDILDLASIDADAMDLS 733 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + + + + + + ++ E+ + + V + +G F+AD +R+ QI +LSNA+ F Sbjct: 734 LEEVDIAEAMRAAAEGVRDRLRESTLTLAVDAAPDIGVFLADGKRIRQILFNLLSNAIGF 793 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 S+ G TV L A+R + + IF V + G IP+DM + VF+RF ++A RGVGLGLSIV Sbjct: 794 STPGQTVTLAASRSHDEVIFKVIDEGCGIPDDMVEHVFDRFKTHAGGSNHRGVGLGLSIV 853 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SF+ LHGG V I + TT+ C PS+ Sbjct: 854 RSFVQLHGGRVLIETKLGKGTTMTCIFPSR 883 Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 82 LTIVWDGKDETPEIIGQLH-------QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134 L I W E PEI G P D+ LL+F++W+ L + L Sbjct: 120 LFIAWSAPGEKPEIAGDPGFLTGKNLATGSSPSPDS-LLAFKSWMSLDDARDLQARIDLL 178 Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194 R++G+SF L + N + IEGR G A +RI + +L + + ++ ++ Sbjct: 179 REKGESFHL-SLGGNGQHLDIEGRPIGGRAVVRIRDVSAARRDLLQLREEQTQILADLAA 237 Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228 + L D++ W RD AG + W N++Y + E Sbjct: 238 VRTLLDAVPHPAWQRDGAGHLSWVNLAYVRAIEA 271 >gi|188584128|ref|YP_001927573.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179347626|gb|ACB83038.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 857 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 258/808 (31%), Positives = 414/808 (51%), Gaps = 37/808 (4%) Query: 16 ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75 + + + +A I G++L I ++ +R+R +K L+++ + L Sbjct: 38 LGAMHTHNVAGLAVILGLILFATILSLVYLRERVGWMRKERALQDELTDLRGAHDRAEML 97 Query: 76 LTENNCLTIVWDGKDETPEIIGQLHQRIDI----------------------------PQ 107 L + + W G+ E P I+G D+ P+ Sbjct: 98 LHSERQVLVAWAGRGE-PMIVGDPAFAQDLRNQDLRNPDLRNQELRGYEAWGQDPQGAPR 156 Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167 LL+F WL L A LR+ G F + + I+ +G+ G A LR Sbjct: 157 GSRHLLTFGTWLAAQDAQLLEAAVATLRERGTGFRMNLRSLAGRFIEAQGQAVGGRALLR 216 Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227 + EL E + ++ +S L D+L VWHRD AG + + N +Y E Sbjct: 217 LRETTEERRELIELRHRLEEAKRGLSALAGLLDALPQPVWHRDTAGALAFVNTAYAAAVE 276 Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHGNNKSYKIVRVLNS 285 + A+ +L + ++ + + +S + G ++ + Sbjct: 277 APN--REAALSHGLELLDRSARDQIARQTGRPGLVAQPLRLSAVVAGARRTLDVSESTLE 334 Query: 286 FGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341 G GIA+DVS+ + Q+ L L A+A+FD + L FHN ++ LW++ Sbjct: 335 TGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDL 394 Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401 D AFL P + E+L+ LR+A KLPEQ ++++WK ++ + Y++ E W+LP+G+TL Sbjct: 395 DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLR 454 Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461 V+ NP+GG +++ +++ + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N Sbjct: 455 VVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANR 514 Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521 AF + W+ + L+ H+ + A C + W IT + R L++ Sbjct: 515 AFAATWRLDPATLAGKPHVDAVIAACRALTPDQSPWAGIRQSITGLSETRSGHACRLDIN 574 Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 +VL+ S PLP T+LTF++VT S ERALTEKN+AL +A +++++FV HVSYELR Sbjct: 575 DGTVLDCSSQPLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELR 634 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 SPLTNIIGFT LL +G+LN +Q +Y E+I SS LL ++NDILDLA++DAG ++L Sbjct: 635 SPLTNIIGFTQLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQ 694 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 TI + ++ + I ++ E++IR+ + +GS AD +R+ QI +LSNA+ F Sbjct: 695 RETIDVRATVDAAVRGIEDRLAESDIRLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGF 754 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 S G V ++A R+ + +V + G I ++ VF+RF SN + RGVGLGLSIV Sbjct: 755 SEPGQQVRVEARREGAELRLTVIDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIV 814 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789 SF+ LHGG V I S+ T + C P Sbjct: 815 RSFVELHGGRVEIHSAPGTGTRVTCLFP 842 >gi|170747176|ref|YP_001753436.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653698|gb|ACB22753.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 862 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 257/782 (32%), Positives = 424/782 (54%), Gaps = 21/782 (2%) Query: 22 CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81 +A+FG G++ +I +L + +R ++ E + L + + LL Sbjct: 44 AALAIFG---GLVAFAVILSLLHLYERGRWTRRERELAATLDVLRGAHDRAEMLLNAERQ 100 Query: 82 LTIVWDGKDETPEIIGQL----HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137 + + WD + E P + G + H +L+F WL + A E LR Sbjct: 101 IIVTWDQRSE-PVVEGDISLAIHGERPTSGYARRVLAFGTWLVPADATAVETAVETLRAR 159 Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197 G F L +Q +I+ G+ A LR+ E+A+ + +S Sbjct: 160 GTGFALSLRSQTGRSIEAHGQAVAGRALLRLRETSQERCEIADLRAALDETRRGLSALSG 219 Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMI 253 L D++ VW R++ G + W N +Y E E + A+ +LF +E I + Sbjct: 220 LLDAIPQPVWRRNRDGGLSWVNAAYVAAVEAES--REAALDAGLELFDRPARETIAREEA 277 Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTY 309 + A +S + GN + + G GIAIDVS+ + Q+ Sbjct: 278 ARFAGLTRSVPRLSAIVAGNRRMLDVFETGLETGRVGIAIDVSELESVRADLQRQMNANV 337 Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369 L L A+A+FD ++ L FHN ++ +LW++D AFL + PS+ E+L+ LR+ KL E Sbjct: 338 RTLDQLPTAVAMFDVSQRLIFHNAAYRQLWDLDQAFLDSRPSDGEILDHLRAERKLEEHA 397 Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429 +++ WK+ + S Y+++E ++ W+LP+G+TL V+ NP+GG ++F++++ +++ E++Y Sbjct: 398 DFRGWKQGVLSAYRAAEANQTWWYLPDGRTLRVVADPNPQGGLTYLFDDVSDRLNAESRY 457 Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 N L ++Q ET+D L+E VAVFG DGR+ L+N AF ++W+ + + H+ + A C Sbjct: 458 NALRRLQAETLDTLAEPVAVFGADGRLSLANRAFFTVWRLDPEMVEERPHVDAVIAACRA 517 Query: 490 YYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 + W D+ A++ + R + LE++ +VL+ + PLP T+LT ++VT S Sbjct: 518 LAPAEEPWLDIRDAVVGL--EARTARTCRLEVVDGTVLDCAAQPLPEGATLLTLIDVTAS 575 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ERALTEKN+AL KA +++++FV HVSYELRSPLTNIIGFT LL +G+LN +Q + Sbjct: 576 VNVERALTEKNDALEKAAQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNERQRE 635 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y ++I SS LL ++NDILDLA++DAG ++L + + + + I ++ E++I Sbjct: 636 YADHIMRSSAALLVIINDILDLASIDAGSLELQREEVDVQATVEAAVRGIEDRLAESHIT 695 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + +GS AD +R+ QI +LSNA+ FS G V ++A R + + SV+++G Sbjct: 696 LALDVPEDIGSVHADGKRVRQILFNLLSNAVGFSDAGQRVEVQARRTAQELLLSVRDHGR 755 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +P ++ SVFNRF S+ + RGVGLGLSIV SF+ LHGG V + ++ T + C Sbjct: 756 GMPPEIADSVFNRFESHTLGTRHRGVGLGLSIVRSFVELHGGRVLLETAPGSGTRVTCTF 815 Query: 789 PS 790 P+ Sbjct: 816 PT 817 >gi|217976854|ref|YP_002361001.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217502230|gb|ACK49639.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 859 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 244/739 (33%), Positives = 400/739 (54%), Gaps = 20/739 (2%) Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 +L + LL + + +VW G D+ PE+ G L + PQ L +F +WL +L Sbjct: 109 RLDRAELLLAASAGIIVVWRGADDQPEVEGDLALLAEDPQRRLPL-AFGSWLVAASAQEL 167 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 LR G +F T + + +EGR A +RI + E + Sbjct: 168 GVRVADLRARGAAFRAAVATLDGRHLDVEGRPLDGVAVMRIRDVSAERMEAIRLQELEAR 227 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 + + D+ W RD G + N +Y + E +A+ + +L ++ Sbjct: 228 AKGELKALWAMLDASPNPAWLRDGEGRLTLVNSAYARAVEAADP--DEAVARNVELLEKP 285 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-----------GIAIDVS 296 ++ + A + + G + + ++ + GEA G+A DV+ Sbjct: 286 AREASREARATGAVWRGRAPAVVVGERRLFDVIDAPS--GEAVAAGSAAPASVGMASDVT 343 Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 + D L + L L+ A+ IFD ++ L FHN ++ +LW +D A+L P++ Sbjct: 344 ELQGARDALEREKQAHARTLDQLSTAVVIFDHSKRLVFHNAAYRQLWGLDQAWLDEKPTD 403 Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412 E+L+ LR+A +PEQ +++ WKE + + Y+S ET + W+LP+ +TL +++ NP+GG Sbjct: 404 SEILDRLRAARLIPEQTDFRVWKEGLLAAYQSIETEEQAWYLPDERTLRIVINPNPQGGV 463 Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 ++++++T + LE+++N ++VQ ET+D L EGVAVFG DGR+KL NPAF LW + + Sbjct: 464 TYLYDDVTERFRLESQFNAAIRVQSETLDTLKEGVAVFGSDGRLKLFNPAFAELWSLDPD 523 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 +L HI +A C+ + + W+ A++ D+R + L +VL+ + P Sbjct: 524 QLGDQPHIDRVAELCAPLFMQEGDWNELRAVVAGLQDQRLGYENRLARRDGAVLDCAAAP 583 Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 LP+ T++TF++ T V ERALTE+N+AL +A+ ++N FV HVSYELRSPLTNIIGF Sbjct: 584 LPDGATLITFIDATAGVNVERALTERNQALIEAERLRNDFVHHVSYELRSPLTNIIGFIQ 643 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL +G LN +Q +Y Y++ SS+ LL ++NDILDLA++DA M+L+ I + + + Sbjct: 644 LLGDPSVGPLNPRQLEYAGYVTKSSSALLAIINDILDLASIDADAMELSLEEIDVAETMR 703 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + ++ E + + VI LG F+AD +R+ QI +LSNA+ FS+ GS + L A Sbjct: 704 AAAEGLEDRVAEAGLTLSVIPMQDLGFFIADGKRIRQILMNLLSNAIGFSAPGSAIGLAA 763 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 R + +F V + G IP ++ +F+RF ++ + RGVGLGLSI SF+ LHGG + Sbjct: 764 LRRGEEIVFKVSDQGRGIPREVVDHIFDRFKTHTSGSRHRGVGLGLSIARSFVELHGGRI 823 Query: 773 SISSSDEGVTTINCRIPSK 791 I S+ TT+ C P+K Sbjct: 824 LIDSALGEGTTVTCIFPAK 842 >gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 836 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 240/693 (34%), Positives = 394/693 (56%), Gaps = 14/693 (2%) Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164 +P+ ++L F WL+ L A +KL G+SF ++ +T I+ EGR +G A Sbjct: 129 LPEHHAEILRFGQWLESTSAHSLKAALDKLFVNGRSFSIILKTIAGGIIEAEGRAAGGRA 188 Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224 LR+ + G E+A + L+ I + L ++L VW R ++W N +Y + Sbjct: 189 VLRLKEVSGYKLEIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQ 248 Query: 225 ----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280 +E E + Q + E R+ +K + + A + + + + G K++++V Sbjct: 249 AVDAKSEIEVLEHQIELLEGRQ------RKSVSRALAAGQTYRSRIHLVSGGERKAHEVV 302 Query: 281 RVLNSFGEAGIAIDVSKEITVNDQL---THTYE-ILHNLTVAIAIFDQNRYLQFHNRSFV 336 + AG A+DV+ + +L + Y+ L + A+AIF + L F+N +F Sbjct: 303 VLPVDGMTAGAAVDVTDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKLAFYNAAFA 362 Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396 +LW +D +LA+NPS++ +L+ LR L +N + WK + + Y++ DTW+L + Sbjct: 363 KLWSLDTDWLASNPSDNVILDRLREIGVLEPVVNHRDWKAQVLACYQTGTPFDDTWNLTD 422 Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456 G+ LHV+ P GG ++F + T ++ LE++YN L+ VQ ET++ L EGVAVFG +GR+ Sbjct: 423 GRILHVMAEQRPDGGVTFLFADETERLSLESRYNALIDVQRETLNSLKEGVAVFGTNGRL 482 Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516 KL N AF ++W ++ RL+ H+ + A + +D W +T+F DER++ G Sbjct: 483 KLFNKAFCNIWHMQQKRLAELPHVGEVIAAAQTLHPNNDTWRRIGHAVTAFLDERETFSG 542 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 + V++Y+++PLP+ T++TF +VTD+ RAERAL E+NEAL AD +K +F+ H+ Sbjct: 543 QMTRDDGVVVDYALMPLPDGATLMTFADVTDAKRAERALVERNEALVAADRLKTNFIGHI 602 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 SYELR+PL +IIGF+++L + G LN+KQ +Y+ I +SS LL ++NDILDLAT+DAG Sbjct: 603 SYELRTPLNSIIGFSEMLASPLFGDLNAKQREYLADIMSSSKTLLAIINDILDLATIDAG 662 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 M+L + + + L++ I + N + I++ ++ FVAD R+ Q+ +LS Sbjct: 663 AMQLKPTPVGVRALIDAAILGIRERAVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLS 722 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756 NA+ FS TV L +NG IF V+++G IP+D +F+RF S +H RG GL Sbjct: 723 NAVGFSKVNGTVRLACWSENGTIIFRVEDDGVGIPKDRIGRIFDRFESQSHGSDHRGAGL 782 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLSIV+S + LHGG + + S + T + R+P Sbjct: 783 GLSIVKSLVELHGGTIEVFSEENRGTRVTVRLP 815 >gi|154250574|ref|YP_001411398.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154154524|gb|ABS61741.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 861 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 400/704 (56%), Gaps = 8/704 (1%) Query: 93 PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152 P I+G +D D D L+ + +L+ A ++LR G F L ++ + Sbjct: 141 PRIVGSTATLVDPSSGDLDFSYLLTRLEPENAGRLNTAVQRLRTRGARFSLHVQSTDGRT 200 Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212 + EGR +G+ A L + + G +E++ + ++ + F+ S F W R Sbjct: 201 FEAEGRPAGALAVLWLRDVTGERAEVSRLKERLRQAEFARARFEEHIGSAPFPAWRRGDD 260 Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEH 271 G ++W N +Y + + + A+ +L EE + +++ S + Sbjct: 261 GALVWVNAAYARAVDAASP--EDAVTRGLELLNEETLSSL-RRGLFDRSRARARSHAIMA 317 Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327 G ++ IV G +GIAIDVS +L E L +T A+AI ++ Sbjct: 318 GERRALDIVEQRLGDGVSGIAIDVSDLDAAEAELRRHIESHAATLDRVTTAVAICGPDKR 377 Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387 L F NR+F LW +D +L PS+ E+L+ LR+ +LPEQ N++ WK+ +Y+S++ Sbjct: 378 LTFRNRAFETLWGLDPHWLDGGPSDGEILDELRARRRLPEQANFQAWKQTRMEIYRSTDP 437 Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447 + WHLP+G+T+ ++ ++P GG I+++EN+T +++LE+ YNTL +VQ ETIDHL EGV Sbjct: 438 VDEYWHLPDGRTIKLLAQAHPFGGVIYLYENVTERLNLESSYNTLARVQRETIDHLYEGV 497 Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507 AVFG DGR+KL NPA+ ++W + +LS H+ + C + WD +T+ Sbjct: 498 AVFGSDGRLKLYNPAYANIWNLADEQLSGEPHVNELVEMCRPLLADEAEWDTLKNGVTNM 557 Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 R + G L+ +V++Y+ +PLP+ T++T+V+VTDS R E+AL ++N+AL AD Sbjct: 558 SGIRTQITGRLDRPDGTVVDYAQVPLPDGATLMTYVDVTDSTRMEQALRDRNDALETADR 617 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ HVSY+LR+PLTNI+GF ++L+T G L+ +Q +Y++ I SS L+++VNDI Sbjct: 618 LKSEFISHVSYQLRTPLTNILGFGEILETEMFGPLSPRQHEYMQGILESSETLIDVVNDI 677 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDLA ++AG M L+ S + L++++ ++ +N + ++V +G AD +R+ Sbjct: 678 LDLAVIEAGAMTLDLSDVELSEVIYATEEFAQRPAQKNKVTLRVECPKDIGIVRADEKRI 737 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI +LSN++ F+S G T+++ AAR + V++ G I + +VF+RF +++ Sbjct: 738 KQIMINLLSNSLAFTSPGDTIVIGAARRDNSVELYVEDTGDGIKPEFQSNVFDRFEAHSS 797 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RRG GLGLS+V SF+ LHGG V++ S+ + T + C +P + Sbjct: 798 SDRRRGAGLGLSLVRSFVELHGGWVTLESAPDVGTRVTCHLPVR 841 >gi|114704750|ref|ZP_01437658.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114539535|gb|EAU42655.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 822 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 254/785 (32%), Positives = 423/785 (53%), Gaps = 17/785 (2%) Query: 21 SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80 S I IA L T ++ + L++ R +L + + + L + + +++ +LL ++ Sbjct: 10 SAPITALALIAVALGTMMVCAVYLMKYRAALTHENEQLRAELVDRSQEANEFRALLGASD 69 Query: 81 CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140 +V+ E P + G+L + P++ L F WL L+ A E LR S Sbjct: 70 QRLLVYR-DSEIPRVFGELPKEAGSPRSPQRFLEFSGWLPIEVAGDLAAAIENLRNNAVS 128 Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200 F + +T+++ I++ GR G A +R G+ ++L + + I + L D Sbjct: 129 FAISLDTRSNELIEVTGRTHGGLALVRFTHTAGLRAKLKRAGSELTEALGTIDTMQALLD 188 Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260 + W RD+ G + W N ++ K +G + + + E ++ + S+ + Sbjct: 189 TAPLPAWLRDREGKLYWVNQAFSK--AVDGGSPDETVENGTEFLAENDRREVASAVSQYG 246 Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316 + +ST+ + + + + G AG+AIDVS+ + +L T E L L Sbjct: 247 LYAGKLSTVVDADRHIFDVTELAGQLGTAGLAIDVSETENIRRELRQTIDSQSETLDKLG 306 Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-- 374 A+A FD L ++N +F L+E+ FL ++P + L+ LR A LP + + + Sbjct: 307 TAVARFDPETRLVYYNAAFKNLFELTDTFLQSDPDHVAFLDHLRHAGVLPTETAFPSQRR 366 Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434 KE++ + Y +++ + WHL +G+TL V+ T +P+GG ++FE++T ++ LE + T+ + Sbjct: 367 KEDL-AAYSATDPTETMWHLSSGRTLRVVATPHPQGGATFVFEDITERLKLEMEIKTVAR 425 Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 +Q ET+D+L EGVAVFG DGR++LSNP F +++ + L I+ T + Sbjct: 426 LQRETLDYLGEGVAVFGGDGRLQLSNPIFGEMFEFDAAFLKSKPRIQTFEDTAGVRIEDG 485 Query: 495 D----GWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 GW + ++TS D+ R S G + L + L Y +PLP AQTMLTF +V+D+ Sbjct: 486 TFDGTGWKGLSVLVTSIDENGRNSENGEVRLSNGMTLAYKAVPLPAAQTMLTFSDVSDAR 545 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 AER L EKN+AL +A+ IK FV +SYELRSPLT +IGF+ LL +LG+LN +QS Y Sbjct: 546 AAERMLREKNDALEEANRIKYDFVSFMSYELRSPLTTVIGFSQLLAEPELGTLNERQSDY 605 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +++I++S+ LL +VND LDLAT+DAGIM+L S + + + + + ++HEN +R+ Sbjct: 606 LDHITSSTRSLLAMVNDTLDLATIDAGIMELEVSHVDIAARVENAVEGVQERLHENQLRV 665 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNG 727 +V AD RL QI +LSNA +F+ +GS + LKA + + F+V + G Sbjct: 666 EVDLTKSGDVLEADGARLTQILYNLLSNATNFAPQGSEIELKAWKSETGSEVCFAVTDRG 725 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP D +F RF +NA G+ G GLGLSIV+S + LHGG + + + + G T + C Sbjct: 726 PGIPADQVDRIFERFETNAEGGRSSGPGLGLSIVKSLVELHGGEIRVETPNGGGTRVICA 785 Query: 788 IPSKE 792 +P+ + Sbjct: 786 LPASQ 790 >gi|323138125|ref|ZP_08073198.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322396587|gb|EFX99115.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 842 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 252/781 (32%), Positives = 403/781 (51%), Gaps = 17/781 (2%) Query: 20 FSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTEN 79 F ++ F G+ L + + + I +R ++ L E +L + + L Sbjct: 54 FDSEVVSFAFSGGLALFSAVVALTHISERKRWQRREAALVEELEETRARLDRAKTFLASE 113 Query: 80 NCLTIVWDGKDETPEIIGQ---LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136 + I W G D P+I L + + + +L F WL L A E LR+ Sbjct: 114 AQILIAWAGPDSEPDINASSMLLAESV----SPRRILGFGAWLAPKDAQDLEAAVESLRR 169 Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196 +G+ F + EGR G A LRI + G EL + N ++ + Sbjct: 170 KGEGFRMPLAGLAGRHFDAEGRAVGGSAVLRIREVSGDRLELIGLRERHAAAQNELAGLR 229 Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256 L ++ VW RD G + + N +Y E + A+ +L ++ R ++ Sbjct: 230 TLLEATPAPVWIRDAEGRLSFVNSAYAAAVEA--AEPRDAVARGLELLEQ--PARAAAAQ 285 Query: 257 ALEKN--FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV----NDQLTHTYE 310 +LEK + V + G + + A IAID + TV Q+ Sbjct: 286 SLEKGAVWRARVPAVVAGERHLLDVTQTATPEMAASIAIDRHEVETVRADLQQQMQSHVR 345 Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 L L A+AIFD+ R L +HN ++ +LW+ID FL P++ E+L+ LR+ ++P + + Sbjct: 346 TLDQLPTAVAIFDRGRRLIYHNDAYAKLWQIDAPFLEQKPTDGEILDRLRAEQRVPVESD 405 Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430 +K WKE +F Y+S E + TWHLP+G+ + V+ N +GG +++++ T DLET++N Sbjct: 406 YKAWKERLFEAYRSPEPIRHTWHLPDGRIIDVVAHPNTQGGVTYLYDDTTKAYDLETRFN 465 Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490 L + Q ET++ L EGVAVFG DGR+ NPAF LW+ + +L I A C + Sbjct: 466 ALNRTQSETLETLREGVAVFGADGRLNFCNPAFAQLWRLDVEQLDKKPRFDAIVAQCRKL 525 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 ++ ++ W +T + R+ +E VL+ + L + +LTFV+VT V Sbjct: 526 HDNAETWAELQCFVTGLAEMREGFTRRIERSDGVVLDCTAQSLLDGAALLTFVDVTADVN 585 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 ERALT++N+AL A++++N F+ HVSYELRSPL NI GF LL G LN +Q +Y+ Sbjct: 586 VERALTDRNKALLAAEKLRNDFIHHVSYELRSPLNNINGFVHLLGEESTGPLNPRQLEYL 645 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 Y+S SS LL +++DILDLAT+D ++L +S + + + + ++ EN+I ++ Sbjct: 646 GYVSKSSAALLAIIDDILDLATIDQDALELEFSDVDAEATMRAAIEGVQDRLAENSIDVQ 705 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +++ +G+F D +R+ QI +LSNA+ FS G TV L A R + +F V + G I Sbjct: 706 IVAMDDVGTFRGDAKRVRQILFNLLSNAIGFSRPGQTVTLAAMRRGDEVVFKVTDRGRGI 765 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 P ++ + VF+RF S+ + RGVGLGLSIV +F+ LHGG V I S+ TT+ C P+ Sbjct: 766 PPEVLERVFDRFESHTAGSRHRGVGLGLSIVRAFMELHGGKVFIDSAPGEGTTVTCVFPA 825 Query: 791 K 791 + Sbjct: 826 Q 826 >gi|296446569|ref|ZP_06888511.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255923|gb|EFH03008.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 848 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 241/731 (32%), Positives = 381/731 (52%), Gaps = 12/731 (1%) Query: 68 QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127 +L + + L L + WDG P++ L + L+F WL +L Sbjct: 105 KLDRAETFLASEPQLLVSWDGAASEPDVENSLGDAAFARRP----LAFGTWLTMKDAREL 160 Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 + LR+ G+ F L + + EGR A LRI + G EL + + Sbjct: 161 EERIGWLRQSGEGFRLAVASPQGRRFEAEGRAVAGRAVLRIREVSGDRLELLSLRERHAR 220 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 + ++L VW R G + + N +Y E E A+ +L + Sbjct: 221 CVAEAEGLHAMLEALPTPVWMRSADGRLSFVNAAYAAAVEAESPA--DALRRQIELIDHQ 278 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV----SKEITVND 303 + + ++ F V+ + G +V A +A+D + + Sbjct: 279 ARAEATVARTRDEVFRARVTAVVAGERHGLDVVEAPFHGASAALALDRHEIDAMRSDLEQ 338 Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSA 362 Q+ + L +A+AIFD+ + L + N ++ LW +D AFL PS+ ++L+ LR+ Sbjct: 339 QMQAHARTMDQLPIAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQGPSDSQILDRLRAE 398 Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421 +LP + ++K WK + Y+SSE H + WH+P+G+TL V+V NP+GG +++++++ Sbjct: 399 QRLPVETDYKAWKSRLLEAYRSSEEHHEHIWHMPDGRTLRVVVNVNPQGGVTYLYDDVSE 458 Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481 + LET+++ L ++Q ET+++L EGVAVFG DGR++ NPAF +LW+ +++ L Sbjct: 459 RYFLETRFHALDRMQNETLENLREGVAVFGADGRLRFCNPAFVALWRLDKHALDEKPRFD 518 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 +A C++ + D W +T + RK + SVL+ + LP +LT Sbjct: 519 AVAGLCAKLHANEDTWSELRGFVTGLQEMRKGFTRRIARSDGSVLDCTAQTLPEGAALLT 578 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 FV+VT V ERALTE+NEAL A++I+N FV HVSYELRSPL NIIGF+ LL G Sbjct: 579 FVDVTAGVNVERALTERNEALIAAEKIRNDFVHHVSYELRSPLNNIIGFSHLLGEKSTGE 638 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN+KQ +Y+ Y+ SS LL ++NDILDLAT+D+ M L + + D + + + + Sbjct: 639 LNAKQLEYLSYVGKSSAALLAIINDILDLATIDSDAMALELGDVDVEDAMRAAAEGVQDR 698 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + EN I +K+++ G +G F D +R+ QI +LSNA+ FS G T+ L A R G+ + Sbjct: 699 LAENTIELKIVATGDVGCFRGDAKRIRQILFNLLSNAIGFSRPGQTITLAALRREGEIVL 758 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G I + + VF+RF S+ + RGVGLGLSIV +F LHGG V I S+ Sbjct: 759 KVADRGRGIAPEALEKVFDRFESHTAGSRHRGVGLGLSIVRAFTELHGGRVLIDSALGEG 818 Query: 782 TTINCRIPSKE 792 TT+ C P+ E Sbjct: 819 TTVTCIFPTDE 829 >gi|218532773|ref|YP_002423589.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525076|gb|ACK85661.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 842 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/785 (32%), Positives = 409/785 (52%), Gaps = 22/785 (2%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A + G++L I ++ +R+R +K L+++ + LL + Sbjct: 46 VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAQLRGAHDRAEMLLHSERQVL 105 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTD-------------TDLLSFENWLKFHHYIKLSKA 130 + W G+ E P I+G D+ D LL+F WL L A Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQLLDSA 164 Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190 LR+ G F + + I+ +G+ G A LR+ EL E ++ + Sbjct: 165 VATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTLEEANR 224 Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250 +S L D+L +WHR G + + N +Y E + A+ +L ++ Sbjct: 225 GLSALAGLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLDRSARE 282 Query: 251 RMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQ 304 +++ + + + S + G ++ + G GIA+DVS+ + Q Sbjct: 283 QIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQ 342 Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 + L L A+A+FD + L FHN ++ LW++D AFL P + E+L+ LR+A K Sbjct: 343 MDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRLRAARK 402 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424 LPEQ ++++WK ++ + Y++ E W+LP+G+TL V+ NP+GG +++ +++ + Sbjct: 403 LPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMK 462 Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484 L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ + L+ H+ + Sbjct: 463 LASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVI 522 Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 A C + W +T + R L++ +VL+ S PLP T+LTF++ Sbjct: 523 AACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFID 582 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 VT S ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL +G+LN Sbjct: 583 VTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNE 642 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +Y E+I SS LL ++NDILDLA++DAG ++L TI + + + I ++ E Sbjct: 643 RQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIEDRLAE 702 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++I + + +GS AD +R+ QI +LSNA+ FS+ G V ++A R+ + +V Sbjct: 703 SDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGRELRLTVT 762 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G I ++ VF+RF SN + RGVGLGLSIV SF+ LHGG V I S+ T + Sbjct: 763 DRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGTGTRV 822 Query: 785 NCRIP 789 C P Sbjct: 823 TCLFP 827 >gi|163853828|ref|YP_001641871.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163665433|gb|ABY32800.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 846 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/790 (31%), Positives = 407/790 (51%), Gaps = 27/790 (3%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A + G++L I ++ +R+R +K L+ + + LL + Sbjct: 46 VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEMLLHSERQVL 105 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFENWLKFHHYI 125 + W G+ E P I+G D+ D LL+F WL Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQ 164 Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185 L A LR+ G F + + I+ +G+ G A LR+ EL E Sbjct: 165 LLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTL 224 Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245 ++ +S L D+L +WHR G + + N +Y E + A+ +L Sbjct: 225 EEAKRGLSALASLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLD 282 Query: 246 EEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EI 299 +++++ + + + S + G ++ + G GIA+DVS+ Sbjct: 283 RSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRA 342 Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359 + Q+ L L A+A+FD + L FHN ++ LW++D AFL P + E+L+ L Sbjct: 343 DLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRL 402 Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 R+A KLPEQ ++++WK ++ + Y++ E W+LP+G+TL V+ NP+GG +++ ++ Sbjct: 403 RAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDV 462 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 + + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ + L+ H Sbjct: 463 SESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPH 522 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 + + A C + W +T + R L++ +VL+ S PLP T+ Sbjct: 523 VDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATL 582 Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LTF++VT S ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL + Sbjct: 583 LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETV 642 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G+LN +Q +Y E+I SS LL ++NDILDLA++DAG ++L TI + + + I Sbjct: 643 GALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIE 702 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ E++I + + +GS AD +R+ QI +LSNA+ FS+ G V ++A R+ + Sbjct: 703 DRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGREL 762 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I ++ VF+RF SN + RGVGLGLSIV SF+ LHGG V I S+ Sbjct: 763 RLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPG 822 Query: 780 GVTTINCRIP 789 T + C P Sbjct: 823 TGTRVTCLFP 832 >gi|240141281|ref|YP_002965761.1| putative histidine kinase, putative HK, ATPase and Sensor Domain [Methylobacterium extorquens AM1] gi|254563790|ref|YP_003070885.1| histidine kinase [Methylobacterium extorquens DM4] gi|240011258|gb|ACS42484.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain [Methylobacterium extorquens AM1] gi|254271068|emb|CAX27075.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain [Methylobacterium extorquens DM4] Length = 847 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/790 (31%), Positives = 407/790 (51%), Gaps = 27/790 (3%) Query: 24 IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83 +A + G++L I ++ +R+R +K L+ + + LL + Sbjct: 46 VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEMLLHSERQVL 105 Query: 84 IVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFENWLKFHHYI 125 + W G+ E P I+G D+ D LL+F WL Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQ 164 Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185 L A LR+ G F + + I+ +G+ G A LR+ EL E Sbjct: 165 LLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTL 224 Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245 ++ +S L D+L +WHR G + + N +Y E + A+ +L Sbjct: 225 EEAKRGLSALAGLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLD 282 Query: 246 EEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EI 299 +++++ + + + S + G ++ + G GIA+DVS+ Sbjct: 283 RSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRA 342 Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359 + Q+ L L A+A+FD + L FHN ++ LW++D AFL P + E+L+ L Sbjct: 343 DLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRL 402 Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 R+A KLPEQ ++++WK ++ + Y++ E W+LP+G+TL V+ NP+GG +++ ++ Sbjct: 403 RAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDV 462 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 + + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ + L+ H Sbjct: 463 SESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPH 522 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 + + A C + W +T + R L++ +VL+ S PLP T+ Sbjct: 523 VDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATL 582 Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LTF++VT S ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL + Sbjct: 583 LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETV 642 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G+LN +Q +Y E+I SS LL ++NDILDLA++DAG ++L TI + + + I Sbjct: 643 GALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIE 702 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ E++I + + +GS AD +R+ QI +LSNA+ FS+ G V ++A R+ + Sbjct: 703 DRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGREL 762 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I ++ VF+RF SN + RGVGLGLSIV SF+ LHGG V I S+ Sbjct: 763 RLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPG 822 Query: 780 GVTTINCRIP 789 T + C P Sbjct: 823 TGTRVTCLFP 832 >gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 875 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/691 (33%), Positives = 376/691 (54%), Gaps = 6/691 (0%) Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162 I +P LL F +WL ++ +L+ G+ F A T I+I G VSG+ Sbjct: 163 IGVPSKLAQLLRFGSWLHPDDASLTAENLARLQSRGEGFVSNASTLEGHVIEIAGAVSGA 222 Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222 LRI + + EL K+L I + + D+L VW RD G + W N +Y Sbjct: 223 DTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALTWVNTAY 282 Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282 T + ++AI + +LF+ + + S K + T+ +G ++Y+ + Sbjct: 283 V--TAIDAKSREEAIDKQIELFETRQRTDLHRMSQSRKPGRIKLQTIVNGCVQTYEAITA 340 Query: 283 LNSFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338 G G A+DVS T D Q+ L ++ +A+F +R L + N +F ++ Sbjct: 341 PIERGSGGAALDVSMLKTQRDELERQIAANARTLDKVSTGVAVFGVDRSLFYCNDAFAKI 400 Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398 WE+++A+LA P+ E + LR LPEQ +++ W++ + + T + WHLP+G+ Sbjct: 401 WELEIAWLAAKPAASEFFDQLRQRRLLPEQPDYRKWRDGKIIAFDRNRTLDEFWHLPDGR 460 Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458 T+HV+ GG ++F+++T ++ LE +++TL++ Q ET+DHL+EG+AVFG DGR+ L Sbjct: 461 TVHVVKDCRDDGGLTFLFDDVTEKLALERQFHTLIEGQRETLDHLNEGIAVFGADGRLDL 520 Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 NP+++S+W E+ L H +I + D W IT + R + GT+ Sbjct: 521 YNPSYQSIWALPEDMLGDQPHFEDIRKASDMLAPDPDFWHTLRESITGMPEARDTFSGTV 580 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 + L Y + PLP+ T++TF +VTD R E L E+NEAL +D +K +F+ HVSY Sbjct: 581 AKSDGAHLAYVVTPLPDGGTLVTFADVTDRKRFEEVLLERNEALEASDRLKTAFLSHVSY 640 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+PLT IIGFTD+L G+LN+KQ +Y+++I SS +LLN++NDI+DLA +DAG + Sbjct: 641 ELRTPLTTIIGFTDMLAEPAFGALNNKQREYLDHIKTSSEVLLNIINDIIDLAALDAGAL 700 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 L + + + L+ + + ++ N+ + V G+ +AD RL+Q+ +LSNA Sbjct: 701 DLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIASGAGTVMADANRLIQVLYNLLSNA 760 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + FS + T+ L R+ SV++ G IPE+ +VF+RF S + + RG GLGL Sbjct: 761 IGFSPEDGTITLACRREKNGVAISVQDTGLGIPEEEQATVFDRFESRSKGSRHRGAGLGL 820 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++V+S + LH G + + S+ TT+ +P Sbjct: 821 TLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851 >gi|154247224|ref|YP_001418182.1| histidine kinase [Xanthobacter autotrophicus Py2] gi|154161309|gb|ABS68525.1| histidine kinase [Xanthobacter autotrophicus Py2] Length = 837 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/539 (38%), Positives = 321/539 (59%), Gaps = 9/539 (1%) Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHN 314 + +F + V + G + ++V V FG AGIAIDV+ E ++ L Sbjct: 289 DGHFRQRVKAVTKGQRRQMEVVEVAGIFGTAGIAIDVTSEEDARAEMKQAVVAHRRTLDQ 348 Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 LT A+AIF + L FHN ++ L+++ AFL +P E+LE LR+ K+PEQ +++ W Sbjct: 349 LTTAVAIFGADERLVFHNAAYERLFDLSPAFLDQHPPEGEILEDLRTRRKVPEQADFRGW 408 Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434 + + Y++ E D WHLP GQ L V+VT N GG ++F++L+ + LE++YNTL++ Sbjct: 409 RAQLREAYRAIEPVNDWWHLPGGQMLRVVVTPNAEGGVTYLFDDLSEHMALESRYNTLIR 468 Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 +QGET+D L+E VAVFG DGR+ L N AF LW E L H+ +AA C + E+ Sbjct: 469 IQGETLDGLAEAVAVFGSDGRLNLYNHAFLGLWSLEARALGERPHVDAVAALCRPLHGET 528 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 + +T+ R+++ +E VL+ + PLP+ TM+TF +VTDSV+ ERA Sbjct: 529 SAFARIRHAVTTIG-PREAVTLRIERPDGRVLDGATQPLPDGGTMVTFRDVTDSVKVERA 587 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ EAL AD++KN+FV HVSY LR+PL ++G+ D+L+ G LN++Q Y+E++ Sbjct: 588 LIERAEALEAADKLKNAFVGHVSYHLRTPLNTLLGYADMLRDGLAGPLNTRQQDYLEHMR 647 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS L L++DILDLA++DAG M+L+ S + + + + V +++ + E + + V Sbjct: 648 QSSDQLRALIDDILDLASIDAGAMELDLSDVDVGETVLGVAEAVRDPVAEAGLNLAVSVG 707 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G FVAD +R+ QI +LSNA+ S G TV L A R +G +F+V++ G +P ++ Sbjct: 708 PDAGHFVADGRRVRQILFNLLSNAIAVSPAGGTVSLGAVRRDGALVFTVRDEGPGVPAEV 767 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV----TTINCRIP 789 ++F RF S + + RGVGLGL+IV SF+ LHGG V+++ + G T C P Sbjct: 768 ADTLFERFESRSAGPRHRGVGLGLAIVRSFMTLHGGSVTVAPAGRGPDAKGTLATCIFP 826 >gi|158422334|ref|YP_001523626.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571] gi|158329223|dbj|BAF86708.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571] Length = 864 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/679 (33%), Positives = 357/679 (52%), Gaps = 26/679 (3%) Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177 W+ L L +EG F ++ + ++IEGR A LR+++ E Sbjct: 195 WVGVEAVAALEGPLAALVREGTPFRILTRDRAAALLQIEGR---GVAGLRVIA----AGE 247 Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQ 234 A + S + +FD +W R G + N +++K EG Sbjct: 248 PAAG--EGVGASTQAQALRAIFDGAPVPMWWRSPDGTLEAVNAAFEKAVACGAPEG---- 301 Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294 E +L + ++ ++ + + V + G + +V +G AG+AID Sbjct: 302 ---AERSELLDQAAREAAEAAHRQGQPYVARVRVVAGGKRRLLDVVEAAGPYGAAGVAID 358 Query: 295 VSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 V+ + + L L L A+ IF + + FHN ++ L++++ AFL P Sbjct: 359 VTDQEAARVEHERSLAAHRRTLDQLNTAVVIFGPDDRVDFHNTAYERLFDLEPAFLDQRP 418 Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410 S E+LE LR+A K+PEQ +++ W+E + Y+ E D WHLP GQ L V+ G Sbjct: 419 SQSEVLERLRAARKVPEQADFRAWREQLRESYRGLEPMNDWWHLPGGQMLRVVAAPTAEG 478 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 G ++F++++ + LE +YN+L+++QGET+D L+E VAVFG DGR++L N AF LW Sbjct: 479 GVTFLFDDMSEHMALEGRYNSLIRIQGETLDGLAEAVAVFGSDGRLRLYNQAFLRLWSLS 538 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530 L HI +AA C + ES W +IT+ D R+ LE VL+ + Sbjct: 539 AQALGERPHIDAVAAMCRPKHGESGAWARIRNVITALD-HREGETLRLETADKRVLDGAA 597 Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 PLP+ TM+TF +VTDSV+ ERAL E+NEAL AD +KN+FV HVSY LR+PL ++IG+ Sbjct: 598 QPLPDGGTMVTFRDVTDSVKVERALIERNEALEAADVLKNAFVGHVSYHLRTPLNSLIGY 657 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L G +N +Q +++ +++ S+ L L++DILDLAT+DAG M L+ + + Sbjct: 658 AHMLAEGVAGEMNPRQREFMTHVNQSADALRELIDDILDLATIDAGAMALDLDAVDVTAT 717 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L S+ + +R+++ G+ G+F+AD +R+ QI +LSNA+ GS V L Sbjct: 718 LEAAADSVRDLLESAGVRLELEWSGEPGTFIADGRRVRQILFNLLSNAIAVEPPGSAVTL 777 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770 +A R + +V+++G I + +F RF S G+RRGVGLGLSIV SF+ LHGG Sbjct: 778 RADRLRDALVLTVRDHGPGIDPATVEQLFQRFESAG--GKRRGVGLGLSIVRSFMELHGG 835 Query: 771 HVSISSSDEGVTTINCRIP 789 V++ + G T C P Sbjct: 836 TVTLKPAPGGGTLAICVFP 854 >gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW] gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW] Length = 821 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 209/618 (33%), Positives = 335/618 (54%), Gaps = 21/618 (3%) Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGIV--FQKAIGE 239 +C++LS + D++ VW R I+W N ++ + + +V + G Sbjct: 199 ECRRLS-------LALDTVPVPVWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGLELPGG 251 Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGEAGIAIDVSK 297 + L E+ R + + E E+ + G+ + +++ + + G +D++ Sbjct: 252 ALTLPPRELAMRARNGAHAE---TESRYLVVDGDRRLFRLTEMPLDRPDLQLGFGLDITG 308 Query: 298 EITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353 E + D+L + E+L L AIAIF + L+F+NR++ +LW +D +L + P Sbjct: 309 EQEIADELERHVSAHAEVLEQLGSAIAIFGADTRLRFYNRAYAQLWGLDEVWLDSEPGYG 368 Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGT 412 ELLE +R+ KL EQ+++ WK + + S E ++ HLP+G+TL + +P GG Sbjct: 369 ELLEDMRARRKLTEQVDFPRWKRQRLAQFTSLLEPEEEMIHLPDGRTLRTLTVPHPFGGL 428 Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 +++ E++T + LET YNTL+ VQ ET+D+L E VAVFG DGR+KL NPAF LW+ E Sbjct: 429 MFVQEDVTHTLALETSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEP 488 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 L+ HI + + W A + + +R +E + SVL YS +P Sbjct: 489 DLAGEPHIAALIERVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVP 548 Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 LP+ + + ++VTDS R E+AL NEAL AD +K+ F+ +VSY+LR+PL I+GF + Sbjct: 549 LPDGAVLFSAMDVTDSARVEQALRATNEALETADRLKSEFIANVSYQLRTPLNAIMGFAE 608 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L G LN +Q +Y + +S LL LVNDILDLAT++AG M L + + + L+N Sbjct: 609 ILNNQYFGPLNPRQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVN 668 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V + + ++ +G+ AD +RL Q ++SNA+ F+ G +IL A Sbjct: 669 GVAMLTRDWARQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILSA 728 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 R + + SV++ G IP+D + VF RF H+ + G GLGLS+V+SFI LHGG V Sbjct: 729 RRAGDEVVLSVRDTGIGIPQDDQQRVFGRFERAHHQSRSGGAGLGLSLVKSFIELHGGRV 788 Query: 773 SISSSDEGVTTINCRIPS 790 I S+ E T + C +P+ Sbjct: 789 EIDSAPEHGTEVRCHLPT 806 >gi|114568634|ref|YP_755314.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339096|gb|ABI64376.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 829 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 217/674 (32%), Positives = 347/674 (51%), Gaps = 27/674 (4%) Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSG-------SCAFLRILSLDGIYSELAETTLKCK 186 L ++GQ F L + ++++GR +G S A +R L G + E + Sbjct: 139 LSEKGQPFSLTILGPSGRFLEVDGRAAGTQLVVWLSDATIRGLEESGARGRIEEAR---R 195 Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246 +S F + W + G I WAN +Y + E + + A+ E + L Sbjct: 196 LVSKDPLAFLDMLGRAPVPAWRMNATGRIEWANQAYVEAVEGDAV---DAVIEKQTLLDA 252 Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306 + ++ + E + G+ + K + S G AG A+DV+ L Sbjct: 253 AMTDLASRATIAGEPVDEMRIVVIDGSRRGLKFLVFPVSGGAAGFALDVTDGEEAKAALA 312 Query: 307 HTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362 + L+++ A+ +FD+++ L FHN++F L+++D A+L P + + L+ +R Sbjct: 313 RFRRAHDDTLNHMAEAVVVFDRSKRLNFHNKAFSNLFKLDDAWLNERPGHGQFLDRMREK 372 Query: 363 NKLPEQLNWKTWKENIFSVY---KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 LPEQ ++ WK + + Y S ET + W LP+G+TL V +P GG + +FE+ Sbjct: 373 RLLPEQADFGAWKTDELARYDAPPSEETPDELWPLPDGRTLRVARQRHPLGGLMLIFEDK 432 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T ++ L +YNTL+ VQ T+D L E VAVFG +GR++L+N AF LW + L Sbjct: 433 TDELALRARYNTLINVQRATLDKLHEAVAVFGANGRLQLNNSAFEDLWGFDAEELDGQPD 492 Query: 480 IRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 ++ TC+ + + W D+ A + RK + G + L VL Y PLP+ T Sbjct: 493 FDAVSETCAALFTDDRVWTDIKARVTDPSPQARKQVTGEMRRLDGRVLTYLTRPLPDGAT 552 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ + +VTDS R E AL E+ EAL ++ IK FV+HVSY+LR+PLT I G+ D+L Sbjct: 553 LICWDDVTDSRRIEEALRERAEALETSERIKTEFVEHVSYQLRTPLTTIGGYADMLAQGF 612 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G L+ +Q + + I +++ L L++DILD+A +DAG ++L + L D+ E + Sbjct: 613 AGELSDRQKEPMSAIQSAAAHLAKLIDDILDVAAIDAGQLELELGDVDLGDVAREAADLV 672 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A + + I++ V I DG LG ADR RL Q+ +LSNA+ + G V + A R+ Sbjct: 673 AARADHHAIKLDVDIEDG-LGLLRADRNRLKQVSMNLLSNAIRHVATGGAVTIGARRNGE 731 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 D VK++G I + SVF+RF RG+R G GLGLS+V+ LHGG V + S Sbjct: 732 DITLWVKDDGEGIAPEKQASVFDRFA----RGERGGAGLGLSLVKEIAELHGGWVELQSE 787 Query: 778 DEGVTTINCRIPSK 791 E T ++C +P + Sbjct: 788 PERGTLVSCHLPPE 801 >gi|218678232|ref|ZP_03526129.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 894] Length = 220 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 161/220 (73%), Positives = 187/220 (85%) Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453 +PNGQTL V T++P+GG W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPD Sbjct: 1 MPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPD 60 Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513 GRI+LSNPAFR+LW E PGTHIR + C+ Y+ DGW FA +ITSFDDER+S Sbjct: 61 GRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRS 120 Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 QGTLEL S VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FV Sbjct: 121 GQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFV 180 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 QHVSYELRSPLTNIIGFTDLL+T +G LN +Q++Y+++I Sbjct: 181 QHVSYELRSPLTNIIGFTDLLRTQGVGPLNDRQAEYIDHI 220 >gi|254292570|ref|YP_003058593.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254041101|gb|ACT57896.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 814 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 214/671 (31%), Positives = 355/671 (52%), Gaps = 23/671 (3%) Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYSELAETTLKCKK--L 188 +LR EG F L N ++ +GR +G A L + ++ G+ A L+ + + Sbjct: 131 QLRTEGAPFSLTIIGPNGRFLEADGRTAGGRAVLWVSDSTIKGLEESGARGRLEEARQII 190 Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKE 246 + + F + F+ W AG + W N SY K E + + V + I + + Sbjct: 191 ARDPTAFLEMLGKAPFIAWRLSGAGRLQWVNESYLKAVEGKNLDHVLDRQI-----MLDQ 245 Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306 EI + + + +T + G ++ +++ S G AG+A DVS+E + L Sbjct: 246 EIASQAQTVLTDKTESRKTRYIVIDGERRAMRVLMFPLSGGVAGMAFDVSEEEAARETLE 305 Query: 307 HTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362 + L++++ A+AIF +R L FHN+ F ELW+++ FL PS+ E L+ LR + Sbjct: 306 RHRRAHDDTLNHVSDAVAIFGADRKLSFHNKHFEELWDLNPRFLLEKPSHGEFLDRLRES 365 Query: 363 NKLPEQLNWKTW--KENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 LP Q + W KE ++ S + ++ W LP+G+TL V +P GG + +F+++ Sbjct: 366 KLLPAQQKYSDWRTKELDYNTGGSKRSIDENMWMLPDGRTLQVTRQKHPLGGILLLFKDI 425 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 + ++ L+ YN L+ Q T+D LSE VAV+G DG ++LSN +F LW+ E +L Sbjct: 426 SDELTLKANYNALINQQKATLDKLSEAVAVYGGDGGLRLSNASFEKLWQLEPAKLKNAPE 485 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQT 538 +A C+ +++ W +T+ E R+ +G ++ S++ + PLP+ T Sbjct: 486 FDEVAEMCAPLFHDKSVWAAIKGRVTNPTPEARQEFRGEMKRSDGSIVTFLTQPLPDGAT 545 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ FV+ T S R E AL E+ EA + AD +K FVQ+VSY+LRSPLT I+G+ + L++ K Sbjct: 546 LIAFVDATASRRVEGALRERAEAFQAADRLKTEFVQNVSYQLRSPLTTILGYAEFLESGK 605 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 GSLN++Q + V I +S L L+ +ILDLAT++AG M L+ + L L++E + + Sbjct: 606 QGSLNAQQLENVNSILQASDHLSRLIENILDLATIEAGRMDLDLKDLDLKSLIDESVEMV 665 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + IKV +GS AD +R+ QI +L+NA+ F++ G T+ +KA + G Sbjct: 666 VANAADTKVSIKVDCPATIGSMHADERRIKQILFNLLTNALRFTTAGDTIKVKAEKAEGV 725 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G + + F+ F S G RG GLGL++V SF+ LHGG V++ S Sbjct: 726 IRLQVTDTGKGVAYEQQAEAFDAFTS----GDNRGAGLGLALVRSFVELHGGWVAMKSKP 781 Query: 779 EGVTTINCRIP 789 T+ C +P Sbjct: 782 TKGATVICCLP 792 >gi|114797839|ref|YP_759129.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444] gi|114738013|gb|ABI76138.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444] Length = 815 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 206/669 (30%), Positives = 361/669 (53%), Gaps = 19/669 (2%) Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI--LSLDGIYSELAETTLKCKK--L 188 +LR+ GQ F L + ++ +GR +G A + I ++ G+ A L+ + + Sbjct: 135 ELRESGQPFSLTIIGTSGRFLEADGRTAGVRAVVWINDTTIKGLEESSARGKLEEARQVI 194 Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248 + + F + F W G + WAN +Y + + + + E + + + + Sbjct: 195 ARDPTAFLDMLGKAPFPAWRVSGMGRLQWANPAYIEAVDGGNL---DRVLERQLMLDQAV 251 Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308 ++ + ET + + ++ +++ S G +A DV+++ ++L Sbjct: 252 SEQARKTITDGAEHDETRHIVVNNQRRAMRVLTFALSGGAGCMAFDVTEQENSREELNRH 311 Query: 309 Y----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 E L+++ A+AIF +R L F+N++F ++W+++ FL PS+ +LL+ LR K Sbjct: 312 VRAHDETLNHVADAVAIFGPDRKLNFYNKAFRDMWDLEETFLLDRPSHGQLLDRLREKKK 371 Query: 365 LPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 LP ++N+ W+ S Y + K D W LP+ +TL V +P GG + +F+++T + Sbjct: 372 LPARMNYAEWRAEEISYYLDIDGVKEDKWSLPDNRTLSVTRQRHPMGGLLVLFKDITDHL 431 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 L+T++N L+K Q T+D+L E VAVFG DGR++L N AF +W +RL ++ Sbjct: 432 SLQTRFNALIKTQSSTLDNLHEAVAVFGSDGRLRLHNRAFERVWDIPADRLKDRPDYADV 491 Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543 + C +++ D WD IT R+S G + S+L Y PLP+ TM+ F Sbjct: 492 ISGCVPLFHDMDIWDAIKVHITD-PTARQSTTGEMRRSDGSLLTYLTHPLPDGNTMIAFA 550 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + R E AL ++ EA AD +K FV++VSY+LRSPLT I G+ +LL+T + G L Sbjct: 551 DVTATRRVESALRDRAEAFEAADRLKTEFVRNVSYQLRSPLTTIFGYAELLETQRNGPLT 610 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ +V I ++S L L+ +ILDLA ++AG + L S + L +++++ + + +K Sbjct: 611 ERQTDHVRAILSASDHLNKLIENILDLALIEAGRLDLELSELDLEEVIHQSVELVVSKAE 670 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + + ++ G+LG D +R+ Q+ ++SN++ F+ G +++ A R GD I S Sbjct: 671 DTEVSVRADITGRLGQMRGDERRIKQVLFNLISNSLRFTEPGGEIVVSAQR-MGDMITLS 729 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V++NGS + D + F+ FVS G +RG GLGL++V+ FI+LHGG V + S D G Sbjct: 730 VRDNGSGLEADKRATSFDSFVS----GDQRGAGLGLALVKHFIHLHGGTVGMKSVDGGGL 785 Query: 783 TINCRIPSK 791 + C +PS+ Sbjct: 786 EVTCWLPSQ 794 >gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense MSR-1] Length = 845 Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 211/695 (30%), Positives = 355/695 (51%), Gaps = 31/695 (4%) Query: 122 HHYIKLSKATEKLRKEGQSFD----LVAETQNDCAIKIE-----GRVSGSCAFLRILSLD 172 H ++L A LR EGQ+F+ L A ++ A+ + G + + R +S Sbjct: 152 HDGLRLETAIGVLRDEGQAFEVDLTLSAGSRRIRAMGVRAASPAGDMLADLVWFRDVSDS 211 Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232 + + +L+ L+ + K L D+L VW RD+ +L N +Y E Sbjct: 212 AVAVDDLARSLQA--LAADATYLKALIDTLPMPVWLRDEDLSVLMVNKAYAAAVEATSA- 268 Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKSYKIVRVLNSFGE 288 + A+ +L ++ + + +A + E S H G + I + G+ Sbjct: 269 -EAAVQAQVELASDDHVREARALAARARAAGEPRSASFHLVLAGERRLAHITEMPLEVGD 327 Query: 289 ----AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340 AG D ++ + +QL+H E+L L+ AIAIF + L F N +F LW Sbjct: 328 TLLTAGFIEDHTRVEELQEQLSHHVSAQVEVLERLSTAIAIFTTDTRLAFFNTAFSRLWR 387 Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQT 399 ++ +L P+ +++ LR LPE +++ KE + S +T HLP+G+T Sbjct: 388 LERDWLENQPTYGAVMDALRDRRLLPEAADYRALKEEELRRFISLIDPIETLMHLPDGRT 447 Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 L +V+ +P GG I+ +E+ T + +E +NT + VQ T+DHL EG+AVFG D R+KLS Sbjct: 448 LRRVVSPHPYGGLIFTYEDFTDTLAMERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLS 507 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQ 515 NPAF +W + L+ H+ + Y+ + + W + + ER+ + Sbjct: 508 NPAFARMWGLSVDDLAGEPHLNELVERLRPYFEGRPDRASTWAPARERLLALVGERRGGE 567 Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 LE +L+ + +PLP+ ++L F++VTD+ R ERAL E+NEAL AD +K+ F+ + Sbjct: 568 WRLERQDGMILDCASVPLPDGASLLAFLDVTDTARVERALIERNEALAAADTLKSEFMSN 627 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VS E+ PLT IIGF ++L + G L+ +Q Y++ I + L +L+ DILDLA ++A Sbjct: 628 VSAEVAKPLTTIIGFAEMLDSDYFGKLSKRQHDYMKGIVEAGNALKSLIADILDLAAIEA 687 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G + L T+ ++ +L+ V + ++ E +++ +G VAD++RL Q+ ++ Sbjct: 688 GHLTLELDTVDIHPMLSSVLGLVRERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLI 747 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 NA+ ++ G + ++A R +G+ V + G IP + + VF FV H GQ G G Sbjct: 748 GNAVKYTPNGGAIAVRAERRDGEVALIVADTGPGIPPEDMERVFKSFVRTIHDGQ-DGAG 806 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 LGL++V F+ LHGG V + S TT+ R+PS Sbjct: 807 LGLALVRRFVELHGGTVELDSVPGQGTTVTVRLPS 841 >gi|83945797|ref|ZP_00958140.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633] gi|83850800|gb|EAP88662.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633] Length = 818 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 243/814 (29%), Positives = 394/814 (48%), Gaps = 62/814 (7%) Query: 14 IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH 73 +++ TL I G++A L +++ L R A+K+ +E D+ + Sbjct: 7 VQLATL----IVTGGSVAFALASSVWAYRLTAGARK--ARKLWRDRLLAAE--DRAERNT 58 Query: 74 SLLTENNCLTIVWDGKDET-------------PEIIGQLHQRIDIPQTD-------TDLL 113 SL + + +VWD ++ P + L Q ++ Q+ TD+L Sbjct: 59 SLFAAHPGVVVVWDVPPQSEAEHWSAPKLYGSPAALASLLQFAELSQSAGANGQIATDIL 118 Query: 114 S----FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169 F + L EGQ F L ++ I+ +GR +G R L Sbjct: 119 DSISEFSARNASGETVSFRDRARALMAEGQPFSLTLTGRSGRKIQADGRPAG-----RQL 173 Query: 170 SLDGIYSELAETTLKCKKLSNHISV--FKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227 + + L +T +H F + W DQ G + W N +Y K E Sbjct: 174 VIWLTDTALRQTEGASDDEISHDDPIGFMDMMGRNPVPAWRMDQKGRLNWVNNAYVKAVE 233 Query: 228 TEGIVFQKAIGESRKLFKEEI---KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284 + + I R+L E + R + +S + V + G + + Sbjct: 234 ASDVA--EVI--DRQLLLEPTLGEQARDVLNSGDPRTGARGV--VLAGQRRVMSVTSYPV 287 Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340 G G A+DV+ L E L+++T A+AIFD+ + L F+NR+F +++ Sbjct: 288 QGGVTGFAVDVTDGEEAKAALNRFREAHDLTLNHMTEAVAIFDRAKKLVFYNRAFSQMFN 347 Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPN 396 ++ AFL P++ LL+ LR +LPEQ ++ W++ S Y+++ + W LP+ Sbjct: 348 VEEAFLNDRPAHGVLLDRLREKRRLPEQADYSAWRQAELSRYETAPNQDAEPDELWALPD 407 Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456 G+TL V +P GG + +FE++T Q+ L+ +YNT +KVQ T+D L E VAVFG DGR+ Sbjct: 408 GRTLRVARQRHPMGGLLLIFEDMTDQLSLQARYNTQLKVQRATLDKLHEAVAVFGSDGRL 467 Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQ 515 KL N AF +LWK + RL G H ++ A+C+ Y+ ++ W A IT E RK++ Sbjct: 468 KLRNAAFETLWKLDPERLD-GVHFDDMVASCTPLYDNAEAWGQLKARITDPSPESRKAMT 526 Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G + SVL + PLP+ T++ + ++TDS R E AL ++ EAL ++ IK FV+H Sbjct: 527 GEIRRADHSVLTWLTRPLPDGATLIAWDDITDSRRIESALRDRAEALEASERIKTEFVEH 586 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VSY+LR+PLT I G+ DLL G L+ +Q +++ I +S L L++DILD+A +DA Sbjct: 587 VSYQLRTPLTTIHGYADLLAGGFAGDLSDRQKEHMGAIQTASAQLGKLIDDILDIAAIDA 646 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G +++ + ++ L E + IA++ + I++ + +D AD +RL Q+ +L Sbjct: 647 GQLEMELGDVNVHALAEESMELIASRAEHSGIKLTLNADEDGPLIRADGKRLKQVIYNLL 706 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 +NAMD + G V + A D V ++G I D +F RF RG G G Sbjct: 707 TNAMDHVNPGGAVEVGAEVAGDDVSLWVADDGVGIAPDRQAKIFERF----ERGDGGGAG 762 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL++V I LHGG V + S T + C +P Sbjct: 763 LGLALVNDIIRLHGGWVELESEPGEGTRVTCHLP 796 >gi|295687664|ref|YP_003591357.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295429567|gb|ADG08739.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 769 Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 197/678 (29%), Positives = 335/678 (49%), Gaps = 34/678 (5%) Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182 H KLS E+ GQS A Q + +EGR +G+ A+LR+ + G + L Sbjct: 107 HAQKLSALFER----GQSCAFDARGQGGW-VSVEGRAAGAMAWLRLAPVSGHDAGLPSA- 160 Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 + F DS+ W G +W N ++ + +G+S Sbjct: 161 ----------ARFAAFVDSVVEPAWIAGADGQAVWGNTAFVRAVGAGSASAPALLGKS-- 208 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKI-VRVLNSFGEAGIAIDVSKEIT 300 F + M+ +A + E + + G +++++ + L G DV++ Sbjct: 209 -FDRAVDA-MVVEAATKGERSEAIRWVNLEGRRRAFRLSAQPLEGGGVGVFCADVTEIED 266 Query: 301 VNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356 V D E L+++ A+AIF R L FHN +F ELW ++ A+LA P++ E+L Sbjct: 267 VRDAFKKHVEAHDETLNHIAEAVAIFSATRRLSFHNTAFAELWGLEPAWLADRPTHGEIL 326 Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415 + LR +LPE +++ WK + Y+S D WHLP+G+TL V+ +P GG + + Sbjct: 327 DRLRQRRRLPETIDYAVWKAAELARYESLGPQADDLWHLPDGRTLKVVRQPHPLGGMLLI 386 Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 + ++T ++ L+ +YN L++VQ T+D L++ VAVFG DGR++L N AF + W + L Sbjct: 387 YSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVTPHALE 446 Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLP 534 + C ++ W + D + R G + D ++ Y PLP Sbjct: 447 AAGDFEGVVELCVPRLHDLAFWRELKGRVADPDPQMRAPTSGEVRTSDDRIVVYQSRPLP 506 Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 + T++ F +VTD+ + AL +++ AL +A+ +K FV +VSYELR+PLT IIG+++LL Sbjct: 507 DGATLIAFADVTDTRELQSALADRSAALDEAERLKRDFVGNVSYELRTPLTTIIGYSELL 566 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + L+ + +V + A++T L ++D+LD+A +DAG M L I ++DLL Sbjct: 567 ERAD--GLSERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIQDIRVSDLLMNA 624 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 ++ + + V + +G D +RL Q ++ NA+ + G V L A R Sbjct: 625 QERALKDAQLGGVTLAVECEEDVGLIRGDAKRLAQTLDHLVENALRQTPPGGRVTLSARR 684 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ V + G +P + +F+RFV R G GLGL++V++ + LHGG V++ Sbjct: 685 ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGR----DRGGPGLGLALVKALVELHGGWVAL 740 Query: 775 SSSDEGVTTINCRIPSKE 792 S +T C +P + Sbjct: 741 ESEPGNGSTFTCHLPETQ 758 >gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199] gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199] Length = 666 Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 178/536 (33%), Positives = 291/536 (54%), Gaps = 15/536 (2%) Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--------EILHN 314 E+ + + HG+ + +V V + G + ++++T +QL ++L Sbjct: 127 SESRNMVVHGDRR---LVDVTETPAADGGTVGTARDLTALEQLQSELARHVDAHADVLET 183 Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 L A+AIF ++ L F N +F LW +D L +P+ E+LE R +LPEQ +++ W Sbjct: 184 LRTAVAIFGPDKRLIFANTAFGRLWSVDADLLERDPTLTEVLERARENRRLPEQSDFRAW 243 Query: 375 KENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 +++ ++ + +H++ LP+ T+ + VTS+P GG + +FE++T ++ LE YNTL Sbjct: 244 RDDFNRLFTTLIGSHEELLFLPDDTTVRMAVTSHPFGGLLMVFEDVTDRLTLERSYNTLT 303 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 VQ ET+D+L +G+A FG DGR+KL NP +R W ++ H+ + + E Sbjct: 304 AVQQETLDNLYDGIAAFGADGRLKLINPTYRHQWGLPDDFGDDEPHVGLVLEAMRLKFGE 363 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 D W A + ER G +E VL+Y ++PLP+ ++L+F +VTD++ +R Sbjct: 364 EDRWPSVKAEWVTRLAERVPRSGRIEQSDGRVLDYGVVPLPDGASLLSFRDVTDTLAVQR 423 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E+ EAL AD +K+ F+ +VSYELR+PL IIGF+++L+ G +N +Q +Y I Sbjct: 424 ALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPMNDRQKEYARAI 483 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 SS L+ LVNDILDLA+++AG ++L + L+ V+ + I V Sbjct: 484 LQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSVRI 543 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 DG + + D +RL Q ++SNA F+ G V++ D+ +F V + G I + Sbjct: 544 DGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVEDDDDMVLFRVADTGVGIALE 603 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+RF G+ G GLGL++V+S + LH G V + S T + CRIP Sbjct: 604 DQGRVFDRF---ERAGRDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIP 656 >gi|83309724|ref|YP_419988.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82944565|dbj|BAE49429.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1] Length = 844 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 168/522 (32%), Positives = 291/522 (55%), Gaps = 27/522 (5%) Query: 289 AGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 AG A+D+++ + +L ++L +L AIAIF + L F N +F LW ++ Sbjct: 323 AGYALDLTRVEELQQELARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAE 382 Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTL 400 +LA P+ +L+ LR LPE +++ +KE+ S+ ++ET HLP+G+TL Sbjct: 383 WLAAQPTYGAVLDSLRERRLLPEVADYRAYKEDELKRFISLIDAAET---LLHLPDGRTL 439 Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 ++ ++P GG I+ +E++T + LE +NT + VQ ET+DHL EGVAVF DGR++L N Sbjct: 440 RRMIAAHPYGGLIFTYEDVTDTLALERSFNTALAVQRETLDHLHEGVAVFKGDGRLRLFN 499 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDDERKSLQG 516 PA+ +W + L H+ + Y+ + W + + + R G Sbjct: 500 PAYARIWNLAPSMLESEPHLNELVEAHRPYFEGGAERASVWPEMRERLMALFNTRAPQSG 559 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 +E L DS+++++ +PLP+ +LT+++VTDS R ERAL E+NEAL AD +K+ F+ +V Sbjct: 560 RVERLDDSIVDFASVPLPDGAMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANV 619 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S E+R PLT +IGF+++L G LN +Q +Y I+ + L L++DILDLA ++AG Sbjct: 620 SAEVRKPLTTVIGFSEMLAAEYFGKLNKRQHEYARGITEAGQGLQALISDILDLAAIEAG 679 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 M L T+ ++ +L+ V + ++ E + + +G VAD +RL Q+ +L Sbjct: 680 QMALELDTVDVHPMLSGVLGLVRERVREKKVTLDFDCPLDIGWIVADERRLRQVLFNLLG 739 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV-- 754 NA+ + G V ++A R + ++ + G+ + ++ + +F F + G+R + Sbjct: 740 NALKRTPSGGKVSVRAERRPSELALTISDTGTGLSDEQRERLFGGFATG---GRREALPA 796 Query: 755 -------GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G+GL++V+ F++LHGG V ++S+ T + R+P Sbjct: 797 GRADDDSGIGLALVQRFVDLHGGRVELASAPGEGTVVTVRLP 838 >gi|304320655|ref|YP_003854298.1| sensory box histidine kinase, hypothetical [Parvularcula bermudensis HTCC2503] gi|303299557|gb|ADM09156.1| sensory box histidine kinase, hypothetical [Parvularcula bermudensis HTCC2503] Length = 935 Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 206/691 (29%), Positives = 341/691 (49%), Gaps = 36/691 (5%) Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186 L + LR G F T I+ +GRV+G+ L + +E A + + Sbjct: 189 LREKVATLRTHGIVFSGAVITDEGRPIECDGRVAGNQVTLWLTDPVVRLAEEAGVVGQAR 248 Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET----EGIVFQKAIGESRK 242 + + D + W R + W N +Y + E E I Q I + + Sbjct: 249 DRAADLHGALNQLDRAPIVAWRRGSNLALEWVNQAYVEMVEAINFAEVIDNQIEIDPAFR 308 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVS 296 E K+ S + V+ G + +++ V SFG G+AID++ Sbjct: 309 PIAERAKEEAERSG--RRGTDGVVAVNVKGQRRLLRVIEVPMHGSVGASFG--GMAIDIT 364 Query: 297 KE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 ++ + + Q L L+ A+A+FD + L++ N++F++LW +D++ L T PS+ Sbjct: 365 RQERAQLDLKRQQRAHKMTLDQLSTAVAVFDAAQSLEYSNQAFLDLWGLDVSILRTRPSH 424 Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE----------THKDTWHLPNGQTLHV 402 ELL+ LR A KLP + ++ WK N +Y + + W LP G+TL V Sbjct: 425 GELLDLLRHAGKLPAKEDFNAWKTNELRLYTEVQGEDRSANEGAAPDEIWDLPEGKTLRV 484 Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 + GG +FE++T + L++++ T + VQ T++ L++GVAVFG DGR+ L N + Sbjct: 485 RHQRHGLGGVSVVFEDITETLRLQSRFQTQISVQRATLNTLAQGVAVFGVDGRLALHNRS 544 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW--DLFAAIITSFDDERKSLQGT-LE 519 F +LW ++L H +++ + + D L I++ ++R S G L Sbjct: 545 FETLWSFSRDQLDDRPHWDSLSEPMAERGRDVDEGLARLKDRIVSLAHEDRVSRVGEELT 604 Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 L +L + PLP+ T++TF+++TD+ E+ L +N+ L AD IK FV H+SY+ Sbjct: 605 LKDGRILLPATSPLPDGATLVTFLDITDAREREKDLEIRNQILEDADRIKTRFVDHISYQ 664 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 LR+PL IIGF +++++ +G LN +Q Y I +S LL+LVNDI+DLA +DAG + Sbjct: 665 LRNPLNTIIGFAEMMESEMVGPLNDRQKDYAATILTASNHLLDLVNDIIDLAAIDAGRLG 724 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L + + DLL A K ++ I +KV +G+ AD +RL Q+ +L+N Sbjct: 725 LELQEVDVRDLLESAAMFAALKAEDSEISLKVDCPKDIGTLKADERRLKQVLFNLLANGF 784 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 F+ G V+L A RD V++ G + P+D +VF+RF S L Sbjct: 785 SFTQAGGQVVLGARRDGDAIRIWVEDTGRGVSPQDQA-TVFDRFESAGPGAGAGLG---L 840 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++V SF+ LHGG V ++S + T + C +P Sbjct: 841 ALVNSFVELHGGFVRLASQEGAGTVVTCHLP 871 >gi|6435833|gb|AAF08344.2|AF083422_1 tyrosine kinase DivL [Caulobacter crescentus CB15] Length = 769 Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 181/647 (27%), Positives = 318/647 (49%), Gaps = 27/647 (4%) Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212 + +EGR +G+ A+LR+ +D S L + F DS+ W Sbjct: 132 VSVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGAD 180 Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272 G +W N ++ + G+S F ++ ++ + G Sbjct: 181 GQAIWGNAAFVRAVGAASAHAPALAGKS---FDRGADAEVVEAAGKGERREALRWINVEG 237 Query: 273 NNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327 +++++ + L+ G DV++ V D E L+++ A+AIF Q R Sbjct: 238 RRRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRR 297 Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SE 386 L +HN +F ELW ++ A+LA P++ E+L+ LR +LPE +++ WK + Y+ Sbjct: 298 LSYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLGP 357 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 D W LP+G+TL V+ +P GG + ++ ++T ++ L+ +YN L++VQ T+D L++ Sbjct: 358 QADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDA 417 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 VAVFG DGR++L N AF + W + L + C ++ W + Sbjct: 418 VAVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVAD 477 Query: 507 FDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 D + R G + ++ Y PLP+ T++ F +VTD+ + AL +++ AL +A Sbjct: 478 PDPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAEA 537 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K FV +VSYELR+PLT IIG+++LL+ + ++ + +V + A++T L ++ Sbjct: 538 ERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GISERGRNHVAAVRAAATQLARSID 595 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD+A +DAG M L I ++DLL ++ + + V + +G D + Sbjct: 596 DVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGK 655 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q ++ NA+ + G V L A R G+ V + G +P + +F+RFV Sbjct: 656 RLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGR 715 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 R G GLGL++V++ + LHGG V++ S +T C +P + Sbjct: 716 ----DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758 >gi|16127714|ref|NP_422278.1| tyrosine kinase DivL [Caulobacter crescentus CB15] gi|221236534|ref|YP_002518971.1| two-component sensor histidine kinase divL [Caulobacter crescentus NA1000] gi|21759092|sp|Q9RQQ9|DIVL_CAUCR RecName: Full=Sensor protein divL gi|13425208|gb|AAK25446.1| tyrosine kinase DivL [Caulobacter crescentus CB15] gi|220965707|gb|ACL97063.1| two-component sensor histidine kinase divL [Caulobacter crescentus NA1000] Length = 769 Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 182/648 (28%), Positives = 321/648 (49%), Gaps = 29/648 (4%) Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212 + +EGR +G+ A+LR+ +D S L + F DS+ W Sbjct: 132 VSVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGAD 180 Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-H 271 G +W N ++ + G+S + + + +A + E + + Sbjct: 181 GQAIWGNAAFVRAVGAASAQAPALAGKSFDRGADAV----VVEAAGKGERREALRWINVE 236 Query: 272 GNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNR 326 G +++++ + L+ G DV++ V D E L+++ A+AIF Q R Sbjct: 237 GRRRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTR 296 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385 L +HN +F ELW ++ A+LA P++ E+L+ LR +LPE +++ WK + Y+ Sbjct: 297 RLSYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLG 356 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 D W LP+G+TL V+ +P GG + ++ ++T ++ L+ +YN L++VQ T+D L++ Sbjct: 357 PQADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLND 416 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 VAVFG DGR++L N AF + W + L + C ++ W + Sbjct: 417 AVAVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVA 476 Query: 506 SFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D + R G + ++ Y PLP+ T++ F +VTD+ + AL +++ AL + Sbjct: 477 DPDPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAE 536 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K FV +VSYELR+PLT IIG+++LL+ + ++ + +V + A++T L + Sbjct: 537 AERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GISERGRNHVAAVRAAATQLARSI 594 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +D+LD+A +DAG M L I ++DLL ++ + + V + +G D Sbjct: 595 DDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDG 654 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 +RL Q ++ NA+ + G V L A R G+ V + G +P + +F+RFV Sbjct: 655 KRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVG 714 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 R G GLGL++V++ + LHGG V++ S +T C +P + Sbjct: 715 R----DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758 >gi|254419079|ref|ZP_05032803.1| PAS fold family [Brevundimonas sp. BAL3] gi|196185256|gb|EDX80232.1| PAS fold family [Brevundimonas sp. BAL3] Length = 782 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 190/646 (29%), Positives = 330/646 (51%), Gaps = 25/646 (3%) Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197 G++F+ + E + +IEGRV+G A+LR+ + A+ T S + Sbjct: 118 GKAFEGLIELGDVEPWRIEGRVAGGGAWLRLSPASRVMLTGADATE---------SGLAL 168 Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257 L D+ W D AG + WAN + + + + G S + + Sbjct: 169 LGDASPIPTWVVDGAGKLAWANRVWLHEIGADSVETARNKGLSFDRGADALVAEAGRLGV 228 Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTY----EIL 312 ++ F T G+ ++++I+ G AI+V++ D L E L Sbjct: 229 RQEGFRWTTGG---GHRRAWRIIAEPAGGGAVTAFAIEVTEAEETRDTLRRHVDAHDETL 285 Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372 ++L A+AIF ++ L FHN +F L++ID A+L P++ ELL+ LR +LPE +++ Sbjct: 286 NHLADAVAIFGPSKRLAFHNTAFQTLFDIDPAWLDERPTHAELLDRLRQRRRLPEVMDYA 345 Query: 373 TWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431 WK Y +S+ + D+W LP+G+TL V+ +P GG + +F ++T +++L +++N Sbjct: 346 GWKARELEFYGASQASPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDITDELNLRSRFNA 405 Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491 ++VQ T+D L++ VAVFG DGR++L N AF + WK +++ T +A C Sbjct: 406 QIQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWKLSAEQIAGSTDFDALAELCKAVL 465 Query: 492 NESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 + W A + D E R ++ G + + + PLP+ T++ F ++T Sbjct: 466 PDPALWLGLKARVADPDPESRVAISGEGRTIDGRIAAWQTRPLPDGATLVAFSDITARRG 525 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E+AL ++ +AL ++ +K FV VSYELR+PLT I+G+++LL+T +G L + Q+ Sbjct: 526 LEQALVQREQALAESQALKREFVGSVSYELRTPLTTIVGYSELLET--MGDLPERGRQHA 583 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +++ L ++D+LD+A +DAG M+L+ + + DLL + + + K+ + Sbjct: 584 GAIRVAASQLARSIDDVLDMAQIDAGEMELSLGDVRVQDLLEQAAERVRAKVEGRGATLT 643 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V L AD R+ Q + +L NA S+G V L A + +V ++G I Sbjct: 644 VTCPPGLKPIRADDHRIGQALNHLLENAARAVSEGGAVTLSAEMAPSEMRVTVSDSGRGI 703 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 P + VF+RFV R +R G G+GL++V++ + LHGG + S Sbjct: 704 PYHLQAHVFDRFV----RRERGGPGVGLALVKALVELHGGWAEVES 745 >gi|302381632|ref|YP_003817455.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192260|gb|ADK99831.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 787 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 191/658 (29%), Positives = 329/658 (50%), Gaps = 28/658 (4%) Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187 +A L EGQ+FDL D +++GR G A++ + L + +E ++ + Sbjct: 121 PEAVRLLLDEGQAFDL-----RDGDWRVQGRPFGGEAWIGLSHL--VPAERSDVV--PGE 171 Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247 + ++ D+ W D G ++WAN ++ + + G ++ Sbjct: 172 APGGLGA-GLIADASPSPTWVVDGQGQLVWANHAWLTEVRAPSLEEAREAGAVFDRGADQ 230 Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGI--AIDVSKEITVNDQ 304 + + ++ F T G +++KI+ L G + AID+++ D Sbjct: 231 LAAEVSRMGVRQEGFRWTAG---DGRRRAWKIMAEPLAGVGGPVLVFAIDMTEAEETRDT 287 Query: 305 L----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360 L T E L++L A+AIF +R L FHN +F L+ +D A+L P++ ELL+ LR Sbjct: 288 LRRHVTAHDETLNHLADAVAIFGPSRKLAFHNTAFQTLFNLDPAWLNERPTHGELLDRLR 347 Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENL 419 LPE +++ WK Y+++E D +W LP+G+TL V+ +P GG + +F ++ Sbjct: 348 QRRMLPEVIDYAGWKAQELEFYEATEAAPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDI 407 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T ++ L +++N ++VQ T+D L++ VAVFG DGR++L N AF + W RL Sbjct: 408 TGELSLRSRFNAQLQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWAVSAERLEAAGD 467 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQT 538 +A C ++ W A + D E R ++QG + + PLP+ T Sbjct: 468 FDAVAELCKVALPDAALWLGLKARVADPDPESRVAVQGEGRTTDGRIAAWQTRPLPDGAT 527 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F +VT E+AL ++ AL+++ +K FV VSYELR+PLT I+G+++LL++ Sbjct: 528 LVAFSDVTARRELEQALAQREAALKESQALKREFVGSVSYELRTPLTTIVGYSELLES-- 585 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L L + Q+ I ++ L ++D+LD+A +DAG M+L+ + + DL E + Sbjct: 586 LEGLPERSRQHAGAIRIAAGQLARSIDDVLDMAQIDAGEMELSVGDVRIRDLFAEAVERH 645 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ +K + L AD +RL+Q +L NA S+G V LKA + + Sbjct: 646 RPRIEGRGATLKAMVPTDLPPVRADARRLMQAVDHLLENATRSVSEGGAVTLKAELNGTE 705 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP + VF+RFV +R G G+GL++V++ + LHGG + S Sbjct: 706 VRIRVEDTGRGIPYHLQALVFDRFVKR----ERGGPGVGLALVKALVELHGGWAEVES 759 >gi|288959556|ref|YP_003449897.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911864|dbj|BAI73353.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 773 Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 205/704 (29%), Positives = 334/704 (47%), Gaps = 86/704 (12%) Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186 L+ A +LR++G F A T V+G+ A R L L G + +T +C Sbjct: 76 LAPALSRLRRDGTPFRCEATTS----------VTGTAATGRRLVLTGRRGQSGDT--RCD 123 Query: 187 --------------------------KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220 + ++ + + D+L VW RD++ + W N Sbjct: 124 VVWIEDVTAASDAARDASLRQEQATGAARSRLAELQAMADALPVPVWMRDRSLRLSWCNR 183 Query: 221 SYKKNTETE-GIVFQKAIGESRKLFK--EEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277 +Y + + G V + E R+L + +R S + + V E + Sbjct: 184 AYASAVDGDAGTV----VAEGRELTAAGPALAERARSGGFAQSDRAPVVIGTERRLLEVT 239 Query: 278 KIVRVLNSFGEA---GIAIDVS--KEIT--VNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330 + L G G A+D++ +E+ ++ LT E+L L AIAIF + L F Sbjct: 240 EAPLPLTDGGGTLVVGYALDLTPLEELRGELDRHLTAHAEVLERLGTAIAIFGPDTRLTF 299 Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHK 389 N+++ LW++D A+L P+N ELLE LR+ +LPE +++T+K + Y E + Sbjct: 300 FNQAYARLWDLDEAWLRGEPTNAELLEELRARRRLPEYADYQTFKRERLTRYTHLVEPVE 359 Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449 + HLP+G TL + +P+GG I + E++T + LE+ YNTL+ VQ ET+D+L+EG+AV Sbjct: 360 EMMHLPDGTTLRHLAAPHPQGGLITILEDVTNTLALESSYNTLMAVQQETLDNLAEGIAV 419 Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------------AATCSRYYNESDG- 496 FG DGR+KLSNPAF LW+ + L HI ++ A S + G Sbjct: 420 FGGDGRLKLSNPAFSRLWELADGELHGEPHIADVIERMRPLLEMPPADKSSEKGPDRPGE 479 Query: 497 ---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 W+ + ER G +E SV+E+S +PLP+ + ++++VTD R E Sbjct: 480 TATWEALKEELIGATLERSVRSGRVERSDGSVVEFSTLPLPDGAVLNSYLDVTDGARLET 539 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL N AL AD++K+ F+ +VS+ LR+PL IIGF ++L G +N +Q +YV I Sbjct: 540 ALRASNAALEAADQLKSEFIANVSHHLRTPLNGIIGFAEVLANQYFGEMNQRQMEYVRSI 599 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 A+ LL L++D++DL ++ AG+ KL + L DLL V +R++V++ Sbjct: 600 LAAGERLLELIDDVVDLTSLGAGVTKLERGAVNLPDLLESVAGLTRDWARREGLRLEVVA 659 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 LG D +RL Q ++ A+ + L R NG SV +G++ P+ Sbjct: 660 PEALGQMEGDGKRLKQALFTLVVGAIRNPPPDRRIRLAGERLNGSITLSV--SGAASPDA 717 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + LG+S+ + + LHGG + + + Sbjct: 718 DPQGA---------------AALGVSLARNVVELHGGRLELDET 746 >gi|83594772|ref|YP_428524.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577686|gb|ABC24237.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 801 Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 180/515 (34%), Positives = 265/515 (51%), Gaps = 24/515 (4%) Query: 290 GIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345 GIA D++ V +L E+L L AIAIF + L FHN +F LW ++ + Sbjct: 295 GIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWGLESDW 354 Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIV 404 L PS + LE R +LPE ++ +K + K +D HLP+G TL ++ Sbjct: 355 LNGEPSYGDFLERQRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLPDGATLRRVI 414 Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464 +P GG I FE++T + LE YN L VQ ETIDHL E VAVFG +GR++LSNPAF Sbjct: 415 APHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGRLRLSNPAFS 474 Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES---DG-WDLFAAIITSFDDERKSLQGTLEL 520 LW GT AA + DG W+ F + D+ G L Sbjct: 475 QLWS------GAGTDSEPQAAALLDDMEAAMIADGAWETFRRRLCVRDESAGPRNGRLVR 528 Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 L+Y+ +PLP+ +L+ +++TD VR E+AL+E+ EALR AD +K+ F+ +VSYEL Sbjct: 529 RDGRHLDYATVPLPDGGLLLSILDITDRVRVEQALSERTEALRAADMMKSEFIANVSYEL 588 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT I GF+++L + G LN++Q +Y E I+ +S ++ L+++I DL ++ AG + L Sbjct: 589 RTPLTTISGFSEILSGAYYGELNTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLAL 648 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 ++ L V + + G VAD R+ QI ++SNA+ Sbjct: 649 ELDAFDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLMSNAIT 708 Query: 701 FSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVG 755 + G V L R D G +F+V + G + E + F F +G R G G Sbjct: 709 GTDAGGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTRAFESFA----KGPRADGAG 764 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 LGL++V F+ LHGG V + S TT+ RIP+ Sbjct: 765 LGLALVRRFVELHGGAVDLVSVPGEGTTVTVRIPT 799 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468 RG T+ + +++T ++E++ + E ++ L +A+FG D R+ N AF SLW Sbjct: 290 RGHTVGIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWG 349 Query: 469 TEENRL----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524 E + L S G + R +D A + F + + L L + Sbjct: 350 LESDWLNGEPSYGDFLER-QRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLPDGA 408 Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 L I P P + TF +VTDS+ ER+ Sbjct: 409 TLRRVIAPHPLGGLITTFEDVTDSLALERS 438 >gi|329847598|ref|ZP_08262626.1| sensor protein divL [Asticcacaulis biprosthecum C19] gi|328842661|gb|EGF92230.1| sensor protein divL [Asticcacaulis biprosthecum C19] Length = 805 Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 184/652 (28%), Positives = 335/652 (51%), Gaps = 44/652 (6%) Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214 I+G+ SG+ A++R L++ G L+ F + + L W + G Sbjct: 151 IDGKASGATAWIR-LAIAGAKQSLSS------------GPFAQMAEHLPAPCWICARDGR 197 Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE---- 270 ++WAN ++ + E + + ++A+ + L + S+ AL + E+ + E Sbjct: 198 MVWANEAWLRAAEVQDL--EQALRDGATLDR--------SADALVSDATESRARREGFRW 247 Query: 271 ---HGNNKSYKIV-RVLNSFGEAGIAIDV-----SKEITVNDQLTHTYEILHNLTVAIAI 321 G ++++++ LN A+DV S+E H E L +L A+AI Sbjct: 248 LTISGQRRAFQVIAEPLNDAYTCAYAVDVTEAEDSREALKRHAKAHD-ETLDSLEDAVAI 306 Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 F R L FHNR+F +LWE++ A+LA P++ E L+ LR +LPE ++ +K Sbjct: 307 FGPERQLTFHNRAFEKLWELEPAWLAERPTHAEWLDRLRQKRRLPETSDYAGFKGRESEF 366 Query: 382 YKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440 + + T D W LP+G++L V+ +P GG + +F + T ++ L+ ++N L++VQ T+ Sbjct: 367 FGLTHTADDEMWSLPDGRSLRVVRQPHPLGGLLILFSDKTGELKLKAQFNALIQVQKSTL 426 Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D L+E V+V+G DGR++L N AF W + ++ +IA C ++ W Sbjct: 427 DQLNEAVSVYGSDGRLRLRNQAFDKFWHLRSDDIAAVMDFAHIAELCLPLVHDRGFWAEL 486 Query: 501 AAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A +T D R QG ++L + ++ PLP+ T++ F ++T + E+A+ +++ Sbjct: 487 KARVTDTDPLARAPQQGEIKLSDSRLAQWRTQPLPDGATLVVFSDITATRSLEKAIEDRD 546 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL ++ +K FV +VSYELR+PLT I+G+ DLL +G ++KQ Y++ I ++ Sbjct: 547 EALNESVRLKREFVANVSYELRTPLTTIVGYADLLHAQNIGH-DTKQKAYLDSIQTAAQE 605 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L ++D+LD+A +DAG M ++ + I L D++ E A ++ + G Sbjct: 606 LARSIDDVLDMAQIDAGEMSVSTADIRLLDIVAEAAARQADAFKSKSVHFDYTGVRESGL 665 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D +RL Q +L +A+ ++ +V L A++D + + V +G IP + +F Sbjct: 666 VHVDGRRLGQCLDHLLGHAVRNATAAGSVSLNASKDGDNLLLEVAYSGRGIPYHVQAHIF 725 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +R++ +R G GLGL++V++ + LHGG +++ S + R+P + Sbjct: 726 DRYIGR----ERGGPGLGLALVKALVELHGGWITLESEPNEGASFKIRLPKQ 773 >gi|167648789|ref|YP_001686452.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167351219|gb|ABZ73954.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 770 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 154/485 (31%), Positives = 264/485 (54%), Gaps = 8/485 (1%) Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369 E L+++ A+AIF Q+R L FHN +F LW ++ A+LA P++ E+L+ LR +LPE + Sbjct: 281 ETLNHIADAVAIFSQSRRLAFHNTAFANLWGLEPAWLADRPTHGEVLDRLRQRRRLPETV 340 Query: 370 NWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428 ++ WK + Y+ D W LP+G+TL V+ +P GG + ++ ++T ++ L+ + Sbjct: 341 DYAKWKAAELARYEDLGPQADEMWDLPDGRTLRVVRQPHPLGGMLLLYSDITGELRLKAQ 400 Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 YN L++VQ T+D L++ VAVFG DGR++L N AF + W L + C Sbjct: 401 YNALIQVQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVSAQALEAAVDFEGVVELCV 460 Query: 489 RYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 ++ W + D + R G + ++ Y PLP+ T++ F +VTD Sbjct: 461 PRLHDLSFWRELKGRVADPDPQMRAPTSGETRTSDNRIIVYQSRPLPDGATLIAFADVTD 520 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + + AL ++++AL +A+ +K FV +VSYELR+PLT IIG+++LL+ + L+ + Sbjct: 521 TRDLQAALADRSQALTEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GLSERSR 578 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +V + +++T L ++D+LD+A +DAG M L I + LL++ ++ + Sbjct: 579 GHVASVRSAATQLARSIDDVLDMAQIDAGEMALEIGDIRVAGLLSDAQERSLKIAQIGGV 638 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + V D +G D++RL QI ++ NA+ + V L A R G+ V + G Sbjct: 639 TLSVECDKDVGLIRGDQKRLSQILDHLIENALRQTPPDGVVTLSARRALGEVRLDVSDTG 698 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +P + +F+RFV R G GLGL++V++ + LHGG V++ S +T C Sbjct: 699 RGVPFHVQAHIFDRFVGR----DRGGPGLGLALVKALVELHGGWVALESEPGAGSTFTCH 754 Query: 788 IPSKE 792 +P + Sbjct: 755 LPETQ 759 >gi|197103684|ref|YP_002129061.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1] gi|196477104|gb|ACG76632.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1] Length = 771 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 191/663 (28%), Positives = 321/663 (48%), Gaps = 32/663 (4%) Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194 R E +F++ E + +EGR +G+ A+LR L G+ E A + Sbjct: 119 RGEACAFEVQGEA---GVVTVEGRAAGALAWLR---LSGMLGEDAGLPTAPR-------- 164 Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254 F + W G +W N ++ + E + G + + + S Sbjct: 165 FAAFLHTRSCPAWIAAADGSPVWVNAAWLRAVGAETLDEAARRGAAFDRGADSVA----S 220 Query: 255 SSALEKNFCETVSTLE-HGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI- 311 +A E V L G +++ IV + L G A DV++ + +QL E Sbjct: 221 EAANLGQRREAVRWLAFDGRRRAFHIVAQPLEGGGVAVWTDDVTEVEELREQLKRNIEAH 280 Query: 312 ---LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368 L+ + A+AIF + + L FHN +F ELW I+ A+L P++ E+L+ LR +LPE Sbjct: 281 DQTLNRIDDAVAIFGEGKRLIFHNTAFAELWGIEPAWLEERPTHGEVLDRLRQRRRLPET 340 Query: 369 LNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427 ++ WK Y K D W LP+G+TL V+ +P GG + +F ++T ++ L+ Sbjct: 341 ADYAKWKAAELDRYEKLGAEPDDLWSLPDGRTLRVVRQPHPMGGMLVLFADITGELKLKA 400 Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 +YN L++VQ T+D LS+ VAVFG DGR++L N +F W ++L + C Sbjct: 401 QYNALIQVQQATLDKLSDAVAVFGSDGRLRLHNESFERFWGIGHDQLE-AADFEAVVQLC 459 Query: 488 SRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 ++ W + D R + G D ++EY PLP+ T++ F +VT Sbjct: 460 VPKLHDLGFWRELKGRVGDPDPGARTPMTGEARTSDDRIVEYRSRPLPDGATLIAFTDVT 519 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D+ R E AL ++ AL +A+ +K FV +VSYELR+PLT IIG+++LL+ S +L + Sbjct: 520 DARRLESALADREAALSEAERLKRDFVGNVSYELRTPLTTIIGYSELLEHSG-DALPERA 578 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + +++T L ++D+LD+A +DA M L+ + + + +L+ V Sbjct: 579 RAHAASVKSAATQLARSIDDVLDMAQIDADEMALDLADVNVAELMIGVAGRWLKPAEAAR 638 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + + +G D +RL QI ++ NA+ + G T+ L A + G+ V + Sbjct: 639 VSLVIERPDDIGLIRGDAKRLAQILDHLVENALTQTPAGGTITLAARKALGEIQLQVSDT 698 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G IP + +F+RF+ +R G GLGL++V++ LHGG V++ S C Sbjct: 699 GRGIPFHVQAHIFDRFIGR----ERGGPGLGLALVKALTELHGGWVALESEPGAGARFTC 754 Query: 787 RIP 789 +P Sbjct: 755 HLP 757 >gi|315497262|ref|YP_004086066.1| pas/pac sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315415274|gb|ADU11915.1| PAS/PAC sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 857 Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 191/689 (27%), Positives = 345/689 (50%), Gaps = 50/689 (7%) Query: 128 SKATEKLRKEGQS--FDLVAETQ--------NDCAIKIEGRVSGSCAFLRILSLDGIYSE 177 ++A ++L EGQ F++ E + + +EGR +G+ A++R+ I SE Sbjct: 112 AEALKRLIAEGQPCRFEVFTEAPRSLMGSKTSGLTLLVEGRATGATAWVRL----AIASE 167 Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKA 236 T+L F + D + W RD G ++WAN ++ K + + + + Sbjct: 168 --HTSLSSGP-------FARMADLIPAPCWVVRD--GQLVWANAAWLKAVDAQNVEQAR- 215 Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGI---A 292 S +L + + ++ +A + E L HG +++++V G+A + A Sbjct: 216 ---SEQLGLDRSAEALVVEAAEQHVRREGFRWLTIHGQRRAFQVV--AEPLGDAYVCAYA 270 Query: 293 IDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348 +DV++ + L + L +L A+AIF + L FHNR+F LW+++ A+LA Sbjct: 271 LDVTESEESREALKRHAKAHDDTLDHLEDAVAIFGPEKRLTFHNRAFEILWDLEPAWLAE 330 Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSN 407 P++ ELL+ LR KLPE ++ TWK Y SE D W LPNG++L V+ + Sbjct: 331 RPTHGELLDRLRQKRKLPETSDFVTWKAQELEFYGLSEAAPDEMWSLPNGRSLRVVRQPH 390 Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 P GG + +F + T ++ L+ ++N+L++VQ T+D L++ V+VFG DGR++L N AF + W Sbjct: 391 PLGGLLLLFSDKTGELTLKAQFNSLIQVQRATLDQLTDAVSVFGSDGRLRLRNAAFDAFW 450 Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVL 526 + L+ + + A C ++ W A +T D ++ Q G + + Sbjct: 451 NLSPDDLAVNSDFGQLTALCLPLVHDRGFWAELKARVTDIDPLARAPQLGEVRTSDGRLA 510 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 ++ PLP+ T++ F ++TD E A+ +++ AL ++ +K FV +VSYELR+PLT Sbjct: 511 QWRTQPLPDGATLVAFSDITDRRALEEAIEQRDVALTESVRLKRDFVANVSYELRTPLTT 570 Query: 587 IIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 I+G+ DLL+ ++ ++ ++ I A+S L ++D+LD+A +DAG M L+ Sbjct: 571 IVGYADLLQRQANAAEADPAEIRRRGFLNAIQAASQELARSIDDVLDMAQIDAGEMSLSP 630 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 S L+ + A + IR + AD+QRL Q+ +L A+ + Sbjct: 631 SDFNLSRTVAAALGRQADTLSAKGIRFDYVGLDTRALIRADQQRLGQVLDHLLDYALRNA 690 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 ++ + +++ ++ + G IP +F+RFV +R G GLGL++V+ Sbjct: 691 AQEGQITIRSRKEGDTLTLEIGYTGRGIPYHTQAHIFDRFVGR----ERGGPGLGLALVK 746 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791 + + LH G +++ S + T +P + Sbjct: 747 ALVELHDGWITLESEPQSGATFALHLPHQ 775 >gi|294011631|ref|YP_003545091.1| putative sensor histidine kinase [Sphingobium japonicum UT26S] gi|292674961|dbj|BAI96479.1| putative sensor histidine kinase [Sphingobium japonicum UT26S] Length = 781 Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 188/749 (25%), Positives = 351/749 (46%), Gaps = 38/749 (5%) Query: 68 QLSKYHSLLTENNCLTIVW--DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125 +L + +L+ IV DG+ E + + + + +P ++L + + L+ Sbjct: 42 KLDRLSALIASAPAAPIVIHSDGRLEAADRLAKWLGKERVPAFVSELTAPDGGLEPDDAT 101 Query: 126 KLSKATEKLRKEGQSFDL-VAETQNDCAIKIEGRVSGSC------AFLRILSLDGIYSEL 178 L++ ++ G+SF L V + + + G +GS L I SE+ Sbjct: 102 ALAQEIAAAQRAGRSFALPVRGVDSSRLLLVRGAPAGSVLAESGGVVLWIFDATDSQSEI 161 Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238 + ++L + L ++ F +WHR + N +Y + + E ++ I Sbjct: 162 QTLKGRVEQLREALEALAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGENA--REVIA 219 Query: 239 ESRKLF--------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGEA 289 +L + + + + +E+ T+ G ++ ++V V L + G A Sbjct: 220 NGTELVETVGGLTPQAAAAQTLADGTPVERMVPATID----GERRTIRVVDVPLGAAGVA 275 Query: 290 GIAIDVSK--EITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345 G A+D ++ + V + + +L L+ +A F +R L+F N+ F+ L+ +D Sbjct: 276 GFALDQNELEQARVEHRRLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLDQER 335 Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405 LA NP + +L+ +R A +LPE ++ W+ + S + ++ W L +G L V Sbjct: 336 LADNPPFERVLDQMREARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQ 395 Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465 P GG + +FE+ T QV L + +TL++V+ T D+L E + VF DGR+ L N FR+ Sbjct: 396 PLPDGGLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRT 455 Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525 +W E+ L+ I + T + +L ++ + ERK G + + Sbjct: 456 IWDVSEDLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRI 515 Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 E++ IPLP+ + T ++VTDS R E+ L ++N+AL +AD++K +FV ++SYELR+PLT Sbjct: 516 FEFAAIPLPDGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRTPLT 575 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I GF +++ G L++ +YV+ I S+ L L++++LDL +AG++ + + + Sbjct: 576 TIAGFAEMMSAGYAGELSASAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEKAPV 635 Query: 646 VLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 DL E + ++A I + + LG+ D++R+ Q +L NA+ + Sbjct: 636 ---DLAVEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAVRYC 692 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSI 760 S+G V+L + V +NG I ++F+ S+ R G G+GL + Sbjct: 693 SRGGRVLLHGDGTTDNARLVVSDNGPGINAKRQATIFD--ASSRTEQARNGGKAGIGLPL 750 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 HGG + + S T + +P Sbjct: 751 ARQLAQAHGGTLQLVSEPGQGTMVVIELP 779 >gi|87200018|ref|YP_497275.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|87135699|gb|ABD26441.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 782 Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 195/740 (26%), Positives = 346/740 (46%), Gaps = 44/740 (5%) Query: 68 QLSKYHSLLTENNCLTIV--WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125 Q + ++ E+ L ++ DG+ E P + +P ++L + ++ L Sbjct: 43 QARRLARMVDESPALPLLVRADGRIEGPARLALWLGFEAMPGYLSELDAGDHGLDEVELA 102 Query: 126 KLSKATEKLRKEGQSFDLV----AETQNDCAIK--IEGRVS-GSCAFLRILSLDGIYSEL 178 +L A + +K G F + +++ CA + +VS G A + + EL Sbjct: 103 RLGDAVRRAQKTGTPFRMALTPRGGSRSLCAQGHLADPQVSPGGAALVWFFDVSESEEEL 162 Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE--------G 230 + +K + + L ++ +W R + N +Y E G Sbjct: 163 VALRAETRKAKSDFAGLSGLIEAAPLPMWFRGPDLRLRLVNSAYVAAVGAESADQVIAQG 222 Query: 231 I-VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGE 288 I + + G S + R +S +E++ T+ G ++ ++ + L G Sbjct: 223 IELIEPVEGLSAAQVARQAHSRKVS---IERSLLATI----KGQRRAVRVTDLPLGDEGV 275 Query: 289 AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 AG +D+ + + Q E+L L+ IA FD+ R L F N+ F+ ++ + A Sbjct: 276 AGYVVDIEEMEELIRQFRRFREAQREMLDTLSAGIAQFDEKRNLVFANQPFLRIFSVPQA 335 Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404 ++ P D +L+ +R A +LPE ++ W+ + + E ++ WHL +G L V+ Sbjct: 336 WVVDTPPFDRVLDRMRDAGRLPEVRDFPEWRRERQGWFLAREPIEEPWHLSDGTHLRVVG 395 Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464 P GG + +FE+ T Q+ L +TL++ + T D+L E +AVF PDGR++L N F Sbjct: 396 QPMPDGGLLMIFEDRTEQLQLSATRDTLLRTRTATFDNLFESLAVFAPDGRLQLWNRRFA 455 Query: 465 SLWKTEENRLSPGTHIR------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 + W +E L+ TH R IA R A +I ERK G L Sbjct: 456 ADWGLDEEFLA--THPRADVLLSRIADQLKRPAQVGT----VAQVIQGATLERKQRSGRL 509 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 L L + +PLP+ +LT +++TDS +AE AL E+N AL +AD +K F+ ++SY Sbjct: 510 ALADGRHLALAGVPLPDGNGLLTVLDITDSQKAEAALRERNAALVEADAVKTRFIANMSY 569 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E R+PLT+I GF +LL++ G L +Q++YVE I S L + ++LDL+ +AG + Sbjct: 570 EFRTPLTSIGGFAELLQSGIAGDLTEQQNEYVEAILTSVERLGEQIENVLDLSQSEAGTL 629 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 L + + LL +V ++ I + + D G D +RL + F +++ NA Sbjct: 630 PLAQEPVEIFPLLTDVVTERTERLAGAGITLDLRGDRSAGMVTGDARRLRRAFGQLIDNA 689 Query: 699 MDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGL 756 + + +G ++++A+R G + V +NG + P + +++ VS + R GL Sbjct: 690 IAATPEGGRILVEASRKKGGALQVVVSDNGRGMEPAVLARALDGLKVSADGKAVERRQGL 749 Query: 757 GLSIVESFINLHGGHVSISS 776 GL +V + HGG++ + S Sbjct: 750 GLPLVRQLVEAHGGNLELMS 769 >gi|307292814|ref|ZP_07572660.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] gi|306880880|gb|EFN12096.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium chlorophenolicum L-1] Length = 781 Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 167/632 (26%), Positives = 306/632 (48%), Gaps = 29/632 (4%) Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235 SE+ K ++L + L ++ F +WHR + N +Y + + E ++ Sbjct: 159 SEIQSLKGKVEQLREALEAMAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGESA--RE 216 Query: 236 AIGESRKLF--------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSF 286 I +L + + + + +E+ T+ G ++ ++V V L + Sbjct: 217 VIAHGTELVETVGGLTPQAAAAQTLTDGAPVERMVPATID----GERRTIRVVDVPLGAA 272 Query: 287 GEAGIAIDVSK--EITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342 G AG A+D ++ + V + + +L L+ +A F +R L+F N+ F+ L+ +D Sbjct: 273 GVAGFAMDQNELEQARVEHRRLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLD 332 Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402 L+ NP + +L+ +R A +LPE ++ W+ + S + ++ W L +G L V Sbjct: 333 QERLSDNPPFERVLDQMREARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRV 392 Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 P GG + +FE+ T QV L + +TL++V+ T D+L E + VF DGR+ L N Sbjct: 393 YAQPLPDGGLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSR 452 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522 FR++W E+ L+ I + T + +L ++ + ERK G + Sbjct: 453 FRTIWDVSEDLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFAD 512 Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 + E++ IPLP+ + T ++VTDS R E+ L ++N+AL +AD++K +FV ++SYELR+ Sbjct: 513 GRIFEFAAIPLPDGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRT 572 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PLT I GF +++ G L++ +YV+ I S+ L L++++LDL +AG++ + Sbjct: 573 PLTTIAGFAEMMSAGYAGELSTSAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEK 632 Query: 643 STIVLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + DL E + ++A I + + LG+ D++R+ Q +L NA+ Sbjct: 633 APV---DLAAEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAV 689 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLG 757 + S+G V+L + V +NG I ++F+ S+ R G G+G Sbjct: 690 RYCSRGGRVLLHGDGTTDNARLVVSDNGPGIDAKRQATIFD--ASSRTEQARNGGKAGIG 747 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L + HGG + + S T + +P Sbjct: 748 LPLARQLAQAHGGTLQLVSEPGQGTMVVIELP 779 >gi|94496374|ref|ZP_01302951.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas sp. SKA58] gi|94424120|gb|EAT09144.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas sp. SKA58] Length = 782 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 176/733 (24%), Positives = 335/733 (45%), Gaps = 46/733 (6%) Query: 87 DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146 DG+ E + + + R P ++L + + ++ L++ ++ G+SF L Sbjct: 64 DGRLEAADRLAKWLGRTRAPNFLSELTAEDGGIEPEDAHALAQVIAAAQRAGKSFALPVR 123 Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIY----------SELAETTLKCKKLSNHISVFK 196 + + + V G+ A + G+ +E+ + +L + + Sbjct: 124 GIDSTRLLL---VRGAPAGPELAESGGVLLWIFDATDSQAEIQSLRSQVAQLRDALEALA 180 Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTE--------TEGIVFQKAIG-------ESR 241 L ++ F +WHR + N +Y + + T+GI +++G + Sbjct: 181 GLVEAAPFPMWHRTPDLRLSLVNSAYVRAVDAQDAADVITQGIELVESVGGVPPEAAAAD 240 Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSK--E 298 + ++++ +RM+ ++ G + ++V V L G AG A+D + + Sbjct: 241 AMARDQLVERMVPATI-------------DGERRMMRVVDVPLGDAGIAGYAVDQHELEQ 287 Query: 299 ITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356 V + + +L L+ +A F +R L+F N+ F+ L+ + LA P + +L Sbjct: 288 ARVEGRRLEAAQRDLLDRLSAGVARFGPDRMLRFWNQPFMSLFGLRQEALADAPVFERVL 347 Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416 + +R A +LPE ++ W+ + S E ++ W L +G L V P GG + +F Sbjct: 348 DQMRDARRLPEHRDFPAWRSERRDWFLSPEPVEENWLLQDGTHLRVYAQPLPDGGLLLIF 407 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 E+ T QV L + +TL++V+ T D+L E + VF DGR+++ N FR++W E L+ Sbjct: 408 EDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFAADGRLQMWNSRFRTIWGASEELLAT 467 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536 I ++ + + +L ++ + ERK G + + E++ IPLP+ Sbjct: 468 HPRIDDLMRDVQSRLAKPEQGNLVRELVRAATVERKQRMGHVGFADGRIFEFAAIPLPDG 527 Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + T ++VTDS R E+ L ++NEAL +AD+IK +FV ++SYELR+PLT I GF +++ Sbjct: 528 NALFTMLDVTDSRRVEQVLRDRNEALEQADKIKTAFVTNMSYELRTPLTTIAGFAEMMSA 587 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G L+ YV I S+ L L++++LDL +AG + + + L DL + Sbjct: 588 GYAGELSEPAKDYVSGILQSTGRLSMLIDNVLDLTQSEAGTLPIERLPLDLGDLARARVE 647 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + +G D +R+ Q +L NA+ + S+G+ ++L Sbjct: 648 RLRAEAVAKGMDLALDLTPAVGVVRGDERRIGQCIDHLLENALTYCSRGARILLHGDGTA 707 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +NG IP + +++F V G+GL + + HGG + + S Sbjct: 708 DRARIVISDNGPGIPTERQRAIFEPLVRAEQARSGAKAGMGLPLARQLVQAHGGTLKLVS 767 Query: 777 SDEGVTTINCRIP 789 T I +P Sbjct: 768 KKGQGTMILIELP 780 >gi|326387830|ref|ZP_08209436.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326207876|gb|EGD58687.1| PAS/PAC sensor signal transduction histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 785 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/527 (28%), Positives = 263/527 (49%), Gaps = 8/527 (1%) Query: 266 VSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA 320 VS G +S +++ + L G AG A+D+ + + Q ++L ++ IA Sbjct: 255 VSATIGGQRRSLRVIDLPLGDDGVAGYAVDIEEMEELTRQFRRFRAAQRQMLDTMSAGIA 314 Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380 FD+ R L F N+ F+ L+ I A++ P D +L+ +R A +LPE ++ W+ Sbjct: 315 QFDERRNLVFVNQPFLRLFNIPQAWVVDTPPFDRVLDRMRDAGRLPEVRDFPEWRRERQG 374 Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440 + S E ++ W L +G L V+ P GG + MFE+ T Q+ L +TL++ + T Sbjct: 375 WFLSREAREEPWLLSDGTHLRVVAQPMPDGGLLMMFEDRTEQLQLSATRDTLLRSRTATF 434 Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D+L E +A FGPD R++L N F + W +E L + A + Sbjct: 435 DNLFESLAAFGPDSRVQLWNRRFVADWGLDEEFLDSHPRADALLARMAVKLRRPGQVATI 494 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560 +I + ER+ G LEL L ++ +PLP+ +LT +++TDS +AE L E+N Sbjct: 495 GQVIEAATLERRQQSGRLELADGRYLAFAGVPLPDGNGLLTILDITDSQKAETMLRERNA 554 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL +AD +K F+ ++SYE R+PLT+I GF ++L++ G L + +YV I S L Sbjct: 555 ALLEADAVKTRFIANMSYEFRTPLTSIGGFAEMLQSGLAGDLPERAKEYVGAILTSVKRL 614 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + +LDL+ +AG + + + + LL+EV + E + + + +G+ Sbjct: 615 GEQIETVLDLSQGEAGTLPIAREAVAIFPLLSEVVHERDEALTEGGLTLDLRGTEAVGTV 674 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI-PEDMCKSV 738 D +RL + F ++ NA+ + +G ++++ R + V +NG + P + +++ Sbjct: 675 TGDPRRLRRAFGHLVDNAIAATGQGGRILVECTRRPDRKVQVVVSDNGRGMEPAQLARAL 734 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784 +S+ R R GLGL +V I HGG + I S +G + + Sbjct: 735 EGLAISSDGRSIERRSGLGLPLVRQLIEAHGGSIEIMSEPGQGTSAV 781 >gi|332185686|ref|ZP_08387433.1| his Kinase A domain protein [Sphingomonas sp. S17] gi|332014044|gb|EGI56102.1| his Kinase A domain protein [Sphingomonas sp. S17] Length = 802 Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 156/527 (29%), Positives = 264/527 (50%), Gaps = 8/527 (1%) Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G ++ +I V L + G AG A+D+ E +L L+ A+A F +R Sbjct: 270 GARRALRIFDVPLTTGGIAGFAVDIEDLEQSRAGAKRFAEAQRAMLDRLSAAVAHFGPDR 329 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSS 385 L F N+ F ++ + +LA +P D +LE +R AN+ PE ++ WK E I ++ Sbjct: 330 ELVFCNQPFRRMFAMRAEWLADHPEFDRVLERMREANRSPEVRDFPGWKAERIGWFRQAG 389 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 ++ WHLP G L V+ P GG + +FE+ T +V L + +TL++V+ T D+L E Sbjct: 390 GGIEEQWHLPGGTHLRVVAQPLPDGGLLLIFEDRTEEVQLASARDTLLRVRTATFDNLFE 449 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 + VF DGR++L N FR LW EE LS + A + + L ++ Sbjct: 450 ALGVFAADGRLQLWNNRFRVLWGLEEEFLSSHPRVDVFADKVAGRLATPNRSALIVDLVR 509 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 S ER+ G + + E++ +PLP+ ++T +++TDS RAE+AL ++ AL A Sbjct: 510 SATIERQQRGGRVAMADGRHYEFAGVPLPDGNALITLLDITDSRRAEQALRDRANALEAA 569 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D++K +FV ++SYELR+PLT+I GF ++L G L + YVE I S+ L LV+ Sbjct: 570 DKVKTAFVANMSYELRTPLTSISGFAEMLHGGFAGPLPETANSYVEAILESTERLGLLVD 629 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LDL G ++ + L + +I + + V +G DR+ Sbjct: 630 DVLDLTRGGEG-AEIEREDVDLARVARTAADTIRPVVGRRRLDFAVEIQRSVGRVTGDRR 688 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL ++ +L +A++ + + ++L A D+G V ++G + + F+RF Sbjct: 689 RLQEVIEHLLRHAVEQTPESGRILLHADGDSGRARIIVSDDGQGMNAEAVAHAFDRFAEP 748 Query: 746 AHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + R +GLGL + + F+ HGG +++ S T + +P + Sbjct: 749 EIKATGERALGLGLPLAKQFVEAHGGTITLLSEPGQGTLVTVELPRR 795 >gi|260752459|ref|YP_003225352.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551822|gb|ACV74768.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 795 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 185/716 (25%), Positives = 329/716 (45%), Gaps = 40/716 (5%) Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL-VAETQNDCAIKIEGRVSGS 162 DIP + + F +WL L+ + L K G++F V + KI+G++ Sbjct: 84 DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVYHKMDQRLFKIDGQILQQ 141 Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219 + IL + I E + ++ + LF+ + F +W+R+ A + N Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201 Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271 SY E T I + G + + ++ + + +++ + + Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255 Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326 G + ++ + L + AG A+DV + + L IL L+ +A F+ + Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385 L F N F L+ + +L +P D +LE +R A +LP ++ WK + S + Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 ++ W L +G L VI P GG + +FE+ T QV L + ++ +++V+ + D L E Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 + VF DGR+ L N F +W+ +E LS + ++A ++ + I Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 ER+ G + + +S IPLP+ +LT ++VTDS R ERAL ++NEAL A Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K FV ++SYELR+PLT+I GF ++L G L+ + YV I + L L++ Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL +++G ++L+ + + LL ++ ++ + E I ++ D LG +D Q Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735 RL + + +L A+ + +G TV L+A+ D+ D + S + S+ + Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733 Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+ F RG + + + ++ FI LHGG + I S+ T +P Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789 >gi|241761919|ref|ZP_04760004.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373599|gb|EER63171.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 795 Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 185/716 (25%), Positives = 330/716 (46%), Gaps = 40/716 (5%) Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGS 162 DIP + + F +WL L+ + L K G++F + D + KI+G++ Sbjct: 84 DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQILQQ 141 Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219 + IL + I E + ++ + LF+ + F +W+R+ A + N Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201 Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271 SY E T I + G + + ++ + + +++ + + Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255 Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326 G + ++ + L + AG A+DV + + L IL L+ +A F+ + Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385 L F N F L+ + +L +P D +LE +R A +LP ++ WK + S + Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 ++ W L +G L VI P GG + +FE+ T QV L + ++ +++V+ + D L E Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 + VF DGR+ L N F +W+ +E LS + ++A ++ + I Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 ER+ G + + +S IPLP+ +LT ++VTDS R ERAL ++NEAL A Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K FV ++SYELR+PLT+I GF ++L G L+ + YV I + L L++ Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL +++G ++L+ + + LL ++ ++ + E I ++ D LG +D Q Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDDNLGMIESDPQ 675 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735 RL + + +L A+ + +G TV L+A+ D+ D + S + S+ + Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733 Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+ F RG + + + ++ FI LHGG + I S+ T +P Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789 >gi|283856402|ref|YP_162837.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4] gi|283775402|gb|AAV89726.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4] Length = 795 Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 185/716 (25%), Positives = 330/716 (46%), Gaps = 40/716 (5%) Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGS 162 DIP + + F +WL L+ + L K G++F + D + KI+G++ Sbjct: 84 DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQILQQ 141 Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219 + IL + I E + ++ + LF+ + F +W+R+ A + N Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201 Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271 SY E T I + G + + ++ + + +++ + + Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255 Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326 G + ++ + L + AG A+DV + + L IL L+ +A F+ + Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385 L F N F L+ + +L +P D +LE +R A +LP ++ WK + S + Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 ++ W L +G L VI P GG + +FE+ T QV L + ++ +++V+ + D L E Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 + VF DGR+ L N F +W+ +E LS + ++A ++ + I Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAEKTRLRLENTEHSHYISDAIR 495 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 ER+ G + + +S IPLP+ +LT ++VTDS R ERAL ++NEAL A Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K FV ++SYELR+PLT+I GF ++L G L+ + YV I + L L++ Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL +++G ++L+ + + LL ++ ++ + E I ++ D LG +D Q Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735 RL + + +L A+ + +G TV L+A+ D+ D + S + S+ + Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733 Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+ F RG + + + ++ FI LHGG + I S+ T +P Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789 >gi|148555587|ref|YP_001263169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] gi|148500777|gb|ABQ69031.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] Length = 798 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/619 (24%), Positives = 295/619 (47%), Gaps = 13/619 (2%) Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243 + + +S+ + L ++ F +WHR + N +Y E E ++ + +L Sbjct: 175 EGQAVSDALDSCLALIEAAPFPMWHRGPDLKLALVNSAYVAAVEGESA--EEVVTGGVEL 232 Query: 244 FKEEIKK--RMISSSALEKNFCET--VSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSKE 298 + R + +A + +T V G ++ +IV V + G AG A D+ Sbjct: 233 VDSADGRTPRATALAARDSGRIKTHVVPVTLGGQRRTMRIVDVPMGEHGVAGYAFDIQDL 292 Query: 299 ITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354 +L E+ L+ +A F +R L F N+ F++ + + +++ +P D Sbjct: 293 EQTRGELGRFQEAQRELFDRLSAGVAQFGPDRSLIFCNQPFLQFFSLLPEWMSDHPEFDR 352 Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414 +LE +R +LPE ++ WK + + + + + ++ W +P GQ L V+ P GG + Sbjct: 353 VLERMRETQRLPEARDFPGWKADRRAWFNAVDAVEENWTIPGGQHLRVVAQPLPNGGLLL 412 Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474 FE+ T QV L + +TL++V+ T ++L E + VF DGR+ + N +FR +W + L Sbjct: 413 FFEDRTEQVQLSSARDTLLRVRAATFENLFEAIGVFASDGRLHIWNQSFRDIWGLSDADL 472 Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534 + + + + + L ++ +R++ G + L +++++PLP Sbjct: 473 AQNLRVDAMVELVAAKLADPSRAQLLRDLVRIATVDRQARTGRMALADGRYFDFAVVPLP 532 Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 + + T +++T S E AL + +AL +AD++K +FV ++SYELR PLT+I GF +LL Sbjct: 533 DGNALFTLLDITASRGIEEALRGRADALEEADKLKTAFVANMSYELRVPLTSIAGFAELL 592 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 G + +YV+ I AS L +LV D+LDL AG + L+ + + LL Sbjct: 593 DGGYAGEMPPIAQEYVKAILASVGRLGSLVEDVLDLTQGAAGNLPLSEEQVDMGALLTGA 652 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + +++ V + LG D +RL QI +L+NA+ ++ V ++ Sbjct: 653 VAAARPAAEGKPLQLLVDVEPGLGEIRGDPRRLRQIADHLLNNAITYTPPQGRVTIRVHG 712 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D+ ++ V + G + +F+ + + ++ ++ +G+GL + + HGG + Sbjct: 713 DDDMIVWVVSDTGPGMDAAQRAGIFDAYPRIDASNDEGKQLIGIGLPLTRQLVEAHGGSI 772 Query: 773 SISSSDEGVTTINCRIPSK 791 ++ S TT+ +P + Sbjct: 773 ALESEPGRGTTVTIHLPRR 791 >gi|103485658|ref|YP_615219.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] gi|98975735|gb|ABF51886.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis alaskensis RB2256] Length = 787 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/517 (28%), Positives = 254/517 (49%), Gaps = 24/517 (4%) Query: 286 FGEAGIAIDVSK---EITVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341 G AG AID+ + E + + T E+L L+ A+A F ++ L F N F L+ + Sbjct: 279 IGIAGYAIDIQELESERGAHRRFVDTQRELLDRLSAAVAQFGPDQGLAFANLPFRRLFGL 338 Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401 D + LL+ R + PE ++ W++ + +E ++ W L +G LH Sbjct: 339 DADDVGEARPFARLLDAWRERGRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLH 398 Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461 V+ P GG + + E+ T QV L +TL++V+ T D+L E VAVF PDGR+ L N Sbjct: 399 VVAQPTPDGGLLLIAEDKTEQVQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQ 458 Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521 FR LW +E L+ + + + + + + +I + ER+ G + Sbjct: 459 RFRRLWGVDEPTLAAHPRVDVLMGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFA 518 Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 +++ IPLP+ +L +++T S + E AL E+NEAL AD+ K +F+ +SYELR Sbjct: 519 DGRHFDFASIPLPDGNALLIMLDITASRKMEGALRERNEALEAADKAKTAFLSRMSYELR 578 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT+I GF ++L+ G L +Q YV+ I S +L ++++LDLA +AG + + Sbjct: 579 TPLTSIGGFGEMLQAGYAGKLGDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIE 638 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAM 699 + + + LL + T+ + +++++ + LG+ D RL ++ + +L NA+ Sbjct: 639 RAPVDVRALLEKALDD--TRPFADAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAV 696 Query: 700 DFSSK----GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV- 754 F++ V+L A D V +NG +PE + +GQ+ G Sbjct: 697 RFTAPARKSAGRVLLHADGDKRGIDIIVSDNGPGMPE---------AAAAVAKGQQAGTD 747 Query: 755 --GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G+GL++ + HGG + + S T + +P Sbjct: 748 TGGIGLALARQLVAAHGGTMEVVSEAGQGTLVRVSLP 784 >gi|46201674|ref|ZP_00208203.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum MS-1] Length = 648 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 194/338 (57%), Gaps = 15/338 (4%) Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 AG A+D+++ ++ + + ++L +L AIAIF + L F N +F LW ++ Sbjct: 306 AGYALDLTRIEDLQVELARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAE 365 Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTL 400 +L P+ +L+ LR LPE +++ +KE+ S+ ++ET HLP+G+TL Sbjct: 366 WLQAQPTYGAVLDSLRERRLLPEVADYRAYKEDELKRFISLIDAAET---LLHLPDGRTL 422 Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 ++ ++P GG I+ +E++T + LE +NT + VQ ET+DHL EGVAVF DGR++L N Sbjct: 423 RRMIAAHPYGGLIFTYEDVTDTLALERSFNTALAVQRETLDHLHEGVAVFRGDGRLRLFN 482 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDDERKSLQG 516 PA+ +W L H+ + Y+ + W + + + R G Sbjct: 483 PAYARIWNLPVTLLETEPHLNELVEAHRPYFEGGAERASVWPEVRERLVALFNTRAPQSG 542 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 +E L DS+++++ +PLP+ +LT+++VTDS R ERAL E+NEAL AD +K+ F+ +V Sbjct: 543 RVERLDDSIVDFASVPLPDGAMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANV 602 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 S E+R PLT +IGF+++L G LN +Q +Y I+ Sbjct: 603 SAEVRKPLTTVIGFSEMLAAEYFGKLNKRQHEYARGIT 640 >gi|85373836|ref|YP_457898.1| two-component signal transduction histidine kinase [Erythrobacter litoralis HTCC2594] gi|84786919|gb|ABC63101.1| two-component signal transduction histidine kinase [Erythrobacter litoralis HTCC2594] Length = 780 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 185/733 (25%), Positives = 334/733 (45%), Gaps = 56/733 (7%) Query: 86 WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL-- 143 W G D P+ + +L D D + L +LS+ + +K F + Sbjct: 75 WLGFDALPQFLSEL--------ADAD----DRGLTKAQLSELSEKVRRAQKSAAPFRMNI 122 Query: 144 -VAETQNDCAIK---IEGRVS-GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198 V +Q A++ + +VS G A + + +EL+ + + + L Sbjct: 123 TVPGSQRSLALRGTLADPQVSPGGAALVWVFDFSESATELSRMREESARAKGDFAALVGL 182 Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI---KKRMISS 255 ++ +W R + N +Y E G + + E + E + ++ Sbjct: 183 IEAAPMPMWFRGTDTRLRLVNSAY---VEAVGAESAEGVVEGQVELIESVDGLSAAQVAG 239 Query: 256 SALE-KNFCETVSTLEHGNNKSYKIVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYE 310 A++ K E + G + + +RV L G AG A+D+ +E+ + Y Sbjct: 240 QAVQHKQSVERIVQATIGGER--RALRVSDLPLGEEGVAGYAVDI-QEMEEQARAHRAYA 296 Query: 311 -----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 +L L+V +A FD R L F N+ F ++ + L LA + LL R A + Sbjct: 297 KAQRNMLDRLSVGVAQFDAERKLTFANQPFRRIFNMRLGGLADGLPFERLLSEARDAGRT 356 Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425 PE ++ W++ + S ET ++ W L +G L ++ P GG + E+ T Q+ L Sbjct: 357 PEVRDFPAWRQEHVEWFASGETQEEAWPLSDGTHLRIVAQPMPDGGLAIIAEDRTEQLAL 416 Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GTHIR 481 +TL++ + T+D L E +AVF PDG ++L N +F S W E L T + Sbjct: 417 SATRDTLLRTRTATLDSLFEALAVFAPDGHLQLWNRSFASTWGVEAETLDEHPLVDTMLE 476 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 IA ++ + +I + +R + L LE++ +PLP+ +LT Sbjct: 477 EIAGNLAKPKH----IKRVGEVIRTATLDRNETGSRVALADGRTLEFAGVPLPDGNGLLT 532 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++VT + +AE AL E+N+AL +AD++K F+ ++SYE R+PLT+I GF +LL++ G Sbjct: 533 TLDVTANEQAETALRERNQALEQADQVKTRFLANMSYEFRTPLTSIGGFAELLESGVAGE 592 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ + +YV+ I S L V ++LDL+ +AG++ L + L + +V + Sbjct: 593 LSPQGREYVQAILDSVGRLTEQVENVLDLSQSEAGLLPLRKEKLELQPFVTQV-----VR 647 Query: 662 MHENNIRIKVIS-DGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 E I K +S D + G+ + ADR++L + +L NA+ + +G +++ A+ Sbjct: 648 EREAEIEAKGLSLDLRGGANIKVEADRRQLARAVGHLLDNAIVATDRGGKILVDLAKKPE 707 Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +NG+ + E++ +++ +S G R GLG+ + I HGG ++I S Sbjct: 708 GTRIVLSDNGAGMSSEELRRALEGLRISEDGEGIERRQGLGIPLARQLIEAHGGDLTIQS 767 Query: 777 SDEGVTTINCRIP 789 T+ +P Sbjct: 768 QTGLGTSATILLP 780 >gi|296283894|ref|ZP_06861892.1| two-component signal transduction histidine kinase [Citromicrobium bathyomarinum JL354] Length = 784 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 145/529 (27%), Positives = 256/529 (48%), Gaps = 16/529 (3%) Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G + +++ + L G AG A+D+ ++ + + E +L L+V +A FD R Sbjct: 259 GMRRRFRVSDLPLAEEGVAGYAVDIQEQEDLAREHRAYREAQRSMLDRLSVGVAQFDDQR 318 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 L F N+ F L + + LL R +LPE ++ +W+++ + +++ + Sbjct: 319 RLTFANQPFRRLLGVRPGASGLGTPFERLLSDARDEGRLPEVRDFPSWRKDRMAWFEAGD 378 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 T ++ W L +G L V+ P GG + E+ T Q+ L +TL++ + +D L E Sbjct: 379 TQEEDWPLSDGTHLQVVGQPMPDGGLALILEDRTEQLSLAANRDTLLRTRTAMLDSLFEA 438 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 +AVF PDGR++L N +F W E + L + + +I S Sbjct: 439 LAVFAPDGRLQLWNHSFPETWGLEPDALDEHPSVDALLGLIQPNLARPKQAKGVGEVIRS 498 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 +RK G L+L +E++ IPLP+ +LT ++VT + +AE AL ++ EAL +AD Sbjct: 499 ATLDRKERAGRLQLADGRTIEFAGIPLPDGNGLLTTLDVTANEQAETALRDRAEALEQAD 558 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 ++K F+ ++SYE R+PLT+I GF +LL+ G L+ +YV I S L + V + Sbjct: 559 KVKTRFLANMSYEFRTPLTSIGGFAELLQAEVAGPLSDGAKEYVAAIIESVARLTDQVEN 618 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS----FVA 682 +LDL+ +AG++ + + L + V + E+ I K I+ GS A Sbjct: 619 VLDLSQSEAGLLPIARRELSLLAFVTGV-----ARAREDVIETKSITLDLRGSQALKLQA 673 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L + ++L NA++ S + +++ A+ +G + +NG + E+ + Sbjct: 674 DPRQLGRAIGQLLDNAIEASGEKGRILVDLAKQDGGVRIVISDNGRGMDENELALALDGM 733 Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S + G R GLGL + I HGG I S T+++ +P Sbjct: 734 RSASEGGAEATRRQGLGLPLARQLIEAHGGRFDIHSEKRIGTSVSLWLP 782 >gi|149184288|ref|ZP_01862606.1| two-component signal transduction histidine kinase [Erythrobacter sp. SD-21] gi|148831608|gb|EDL50041.1| two-component signal transduction histidine kinase [Erythrobacter sp. SD-21] Length = 780 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 178/731 (24%), Positives = 316/731 (43%), Gaps = 52/731 (7%) Query: 86 WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-----LRKEGQS 140 W G D+ PE + +L R + LS E + +++ ++ + K LR G Sbjct: 75 WVGLDKVPEYLTELAGR------EGQGLSEEQVERLSAHVRRTQKSAKPFKMALRPPGSR 128 Query: 141 FDLVAETQ-NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199 L D A+ G A + + ELA + + + L Sbjct: 129 KSLALRGALADPAVSPSG-----AALIWVFDFTETEDELARLGEEAARARDDFGALVGLI 183 Query: 200 DSLDFLVWHRDQAGDILWANISY--------KKNTETEGIVFQKAIG-ESRKLFKEEIKK 250 ++ +W R + N +Y E I +A+G S ++ Sbjct: 184 EAAPMPMWFRGADMQLRLVNKAYVEAVGANSADQVVAEQIELVEAVGGRSAAQVAQQAAD 243 Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRV--LNSFGE--AGIAIDVSKEITVNDQLT 306 R +E+ T+ + + + VRV L GE AG AID+ + + Sbjct: 244 R---RQPIERILTATI-------DNARRTVRVTDLPLVGEGIAGYAIDIEEMEEQAREFR 293 Query: 307 HTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362 E +L L++ +A FD + F N+ F ++ + ++ D++L R Sbjct: 294 AFREAQRSMLDQLSIGVAQFDAQHRMTFANQPFHRVFALPPGVVSERIRFDQMLMIAREN 353 Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422 ++PE ++ TW++ + + E + W LP+ L ++ P GG + + E+ T Q Sbjct: 354 GRIPEVRDFPTWRKELAEWFLKDEPEEHQWPLPDSTHLRLVSQPLPDGGLVLIAEDRTEQ 413 Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482 + L +TL++ + T D L E +AVF PDG ++L N F W E L Sbjct: 414 LALSATRDTLLRTRTATFDSLFEALAVFAPDGHLELWNRGFPIAWGLESEVLDGHPQAEQ 473 Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 + + E I + +RK G ++L L Y+ +PLP+ +LT Sbjct: 474 LLEAIGKQLAEPKEISQIGQTIRAATLDRKPRDGRIQLADGRTLTYAGVPLPDGNGLLTV 533 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VT S +AE AL E+N AL +AD + F+ ++SYE R+PLT+I GF +LL G L Sbjct: 534 LDVTASQKAEEALRERNRALEEADAVMTRFLANMSYEFRTPLTSIGGFAELLSQGIAGEL 593 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y++ IS S L V ++LDL+ +AG+M L + + +LL ++Q I K Sbjct: 594 TPQAREYIQAISLSVGKLTEQVENVLDLSQSEAGLMPLRKAKV---ELLPFIEQ-IVRKR 649 Query: 663 HENNIRIKVISD--GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E + + D G V AD Q+L + +++ NA+ + +G +++ A G Sbjct: 650 EEAILGAGLTLDLKGNANKVVEADPQQLQRALGQLIDNAIAHTPRGGRILIDIATRRGLN 709 Query: 720 IFSVKNNGSSIPE-DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 ++ +NG + + ++ +++ +S +G R GLG+ + + HGG + + Sbjct: 710 RIAISDNGEGMSQHELARALEGIRMSEDGKGIERRQGLGIPLARQLVEAHGGTLEFQTRK 769 Query: 779 EGVTTINCRIP 789 TT +P Sbjct: 770 NAGTTATVTLP 780 >gi|85708406|ref|ZP_01039472.1| two-component signal transduction histidine kinase [Erythrobacter sp. NAP1] gi|85689940|gb|EAQ29943.1| two-component signal transduction histidine kinase [Erythrobacter sp. NAP1] Length = 782 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/533 (26%), Positives = 258/533 (48%), Gaps = 23/533 (4%) Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326 G+ +S ++ + L G AG A+D+ ++ V + + +L L+V +A F Sbjct: 258 GSRRSVRVTDLPLGRDGVAGYAMDIEEQQQVTREFRAFRDAQRAMLDQLSVGVAQFTSEE 317 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386 L F NR F L+ I S ++ L R PE ++ W+ + + +SE Sbjct: 318 KLAFANRPFRRLFGITAEVAEGRVSFEQFLSDAREHGSTPEVRDFPEWRREHRAWFDASE 377 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 ++ W L G L ++ P GG + + E+ T + L +TL++ + T+D L E Sbjct: 378 AVEENWPLTGGVHLRIVAQPMPDGGLVMIAEDRTESLALSATRDTLLRTRTATLDSLFEA 437 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 +A+F PDG ++L N +F +W E L + + AI+ + Sbjct: 438 LAIFAPDGSVQLWNRSFGGMWGLESEFLDTHPSAEVLLEAIGENLRRPGEAEKIGAIVRA 497 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 +R+ +G + L L ++ +PLP+ +LT +++TDS +AE+AL E+ AL +AD Sbjct: 498 ATLDRREKEGQVVLADGRTLRFAGVPLPDGNGLLTVLDITDSQKAEQALRERAVALEEAD 557 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +K F+ ++SYE R+PLT+I GF +LLK+ G L S+YV+ I +S L V + Sbjct: 558 AVKARFLANMSYEFRTPLTSIGGFAELLKSGAAGELGEGASEYVDAILSSVERLTEQVEN 617 Query: 627 ILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 +LDL+ +AG++ + I L L+ E +Q+I +++ G+ G V Sbjct: 618 VLDLSQSEAGLLPIEKEEIDLLAFLTKLVREREQAIIGAGLGLDLK------GRRGRVVE 671 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSI-PEDMCK 736 AD ++L + +L NA++ + +G + ++ + D + S+ + G + P+++ + Sbjct: 672 ADPRQLGRALGHLLDNAIEATPEGGKITIELPKPTDDDAWRGKVSISDTGKGMTPDELAR 731 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++ + G GLG+ + I HGG + ++S + T+ +P Sbjct: 732 AEGTLNSDDSEMSE--GSGLGIRLARQLIEAHGGTLDLTSRKDVGTSAVIVLP 782 >gi|218510751|ref|ZP_03508629.1| probable two-component sensor histidine kinase protein [Rhizobium etli Brasil 5] Length = 367 Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 154/273 (56%), Gaps = 4/273 (1%) Query: 36 TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95 ++ + L+RQR +L + E S LS+ ++S+Y +L+ + N ++WDG + PE+ Sbjct: 97 AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155 Query: 96 IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155 +GQL PQ D + L+F WLK L KA ++LR QSFD+V ET D ++ Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214 Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215 +GRVSG AF+R ++L+ + +ELAE ++ +L IS F+ + D++D W RD AG + Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274 Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275 W N +Y E Q+AI E R++ ++R+ +++ E F +T+ST+ HGN Sbjct: 275 TWVNQAYGDAVEARSP--QEAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332 Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308 + +V V G AG+A+DVS V +L T Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRT 365 >gi|46205760|ref|ZP_00048127.2| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum MS-1] Length = 219 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 124/207 (59%) Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 Y + E W+LP+G+ L V+ NP+GG +++ +++ + L ++Y+ L+K Q ET++ Sbjct: 9 YHAVEATDTPWYLPDGRALRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLE 68 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 L E VAVF DGR+ ++N AF W+ + L+ H + A C + W Sbjct: 69 ALKEPVAVFAADGRLTVANRAFAVTWRLDPATLAGRPHADAVIAACRALTPDQSPWAGIR 128 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 +T ++ R L++ +VL+ S PLP T+LTF++VT S ERALTEKN+A Sbjct: 129 QAVTGLNETRSGHACRLDMSDGTVLDCSAQPLPLGATLLTFIDVTASANVERALTEKNDA 188 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNII 588 L +A +++++FV HVSYELRSPLTNII Sbjct: 189 LERASQLRDTFVHHVSYELRSPLTNII 215 Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369 E L L +A+F + L NR+F W +D A LA P D ++ R+ P+Q Sbjct: 65 ETLEALKEPVAVFAADGRLTVANRAFAVTWRLDPATLAGRPHADAVIAACRALT--PDQS 122 Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426 W ++ + + ++ H + +G L P G T+ F ++T ++E Sbjct: 123 PWAGIRQAVTGLNETRSGHACRLDMSDGTVLDCSAQPLPLGATLLTFIDVTASANVE 179 >gi|27883942|gb|AAO21470.1| putative two-component sensor histidine kinase [Agrobacterium tumefaciens] Length = 301 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 129/214 (60%), Gaps = 2/214 (0%) Query: 16 ICTLF-SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74 + LF S ++AVF I G++ ++ + ++RQR +L + E + LS+ ++S+Y + Sbjct: 76 VVRLFTSSEMAVFSVIIGVISAALLSTVWMVRQRGNLESESREIRTALSDANQRISQYQA 135 Query: 75 LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134 L+ + N I+WDG++ PE++GQL PQ D + L+F W+K +L KA +KL Sbjct: 136 LIADKNRRIIIWDGQNARPELLGQLPVETGAPQ-DNEFLAFGRWMKSWSAGELEKAIDKL 194 Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194 R GQSFD+V ET + ++ +GR+SG AF+R ++L+ + +ELAE ++ ++L IS Sbjct: 195 RGSGQSFDIVVETNREEILEAQGRISGGRAFVRFIALNNLRAELAELKIERERLMTSISA 254 Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228 F+ L D++D VW RD G + W N +Y + E Sbjct: 255 FQNLLDAIDLPVWQRDADGQLTWVNHAYGEAVEA 288 >gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 851 Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 2/251 (0%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD +AE AL E A+ KN F+ +VS+ELR+PL +IIGF++L+ T + G L Sbjct: 601 IDVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGEL 660 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q Y+ + S LL+L+N ILD++ ++AG M N + + DL+N+V ++ + Sbjct: 661 NEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQA 720 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI ++ I+D LG+ AD +L + +++NA+ F+ + V L+ + +G+ F+ Sbjct: 721 LNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKLDGNIRFA 780 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IPED +F F R G GLGL++V+ F+ +H G + I S Sbjct: 781 VKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNK 840 Query: 781 VTTINCRIPSK 791 T I IP K Sbjct: 841 GTAIYFTIPVK 851 >gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 849 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 4/253 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ +AE + + A A+ K +F+ ++S+ELR+PL +IGF+DLL + G Sbjct: 564 MIDITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGP 623 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN KQ +Y E IS S + LL+++ND+LD++ ++ G ++L Y T+ + ++ EV++ +++ Sbjct: 624 LNEKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSL 683 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 E NIRI+ + L + DR + QI +L+NA+ FSS+ V +K AR GD + Sbjct: 684 SAEKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIK-ARSEGDMVE 742 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 SVK+ G I E VF FV R+ GVGLGL++V+ F+ LHGG V + +S Sbjct: 743 ISVKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASP 802 Query: 779 EGVTTINCRIPSK 791 +T RIP + Sbjct: 803 GKGSTFTFRIPKR 815 >gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 715 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/268 (39%), Positives = 149/268 (55%), Gaps = 12/268 (4%) Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 IP+P+ Q + T +VT+ AER L EK A A+ K+ F+ ++S+ELR+PL Sbjct: 445 IPVPDEQGKIIGILQTCRDVTERKEAERLLHEKQIA-EIANRTKSEFLANMSHELRTPLN 503 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IIGF+DLL G LN KQ++ V IS S LLNL+NDILDL+ V+AG M+L+Y Sbjct: 504 SIIGFSDLLYEKVYGELNEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEF 563 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L LN +K ++ NI I + D L AD R +QI ++ NA+ FS + Sbjct: 564 ELAGKLNAIKSLLSPIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHEN 623 Query: 706 STVILKAARDNGDFI-FSVKNNGSSIP-EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 V ++A R GD + +VK+ G I ED CK +F F V + +G GLGLS+V Sbjct: 624 GLVKVRAER-KGDLVEITVKDKGIGIKEEDQCK-LFKPFSQVDSFSSKTFQGTGLGLSLV 681 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789 + +NLHGG V +S +T +P Sbjct: 682 KQIVNLHGGEVWFNSKIGEGSTFAFTVP 709 >gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 813 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 120/405 (29%), Positives = 207/405 (51%), Gaps = 15/405 (3%) Query: 394 LPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQG-ETIDHL--SEGVAV 449 +P T +++ N R G I + E+LT E K V++Q ET+ L S V Sbjct: 381 IPGEITYKPLISENSRFNGGIILVEDLT-----EVKRLEAVRLQQTETLRKLVGSIPVPA 435 Query: 450 FGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITS 506 F D G N F +L + ++ + G HI + I + Y+ D + Sbjct: 436 FCKDRNGVYIACNKGFENLLRVQKQDII-GKHIYDFIPHKIAENYHAMDIGLVKHKRNHV 494 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 ++ K G++ + + +S + ++ + +++T+ +AE + + A+ Sbjct: 495 YETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDITERKQAEERMLQAKMVAEAAN 554 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 K +F+ ++S+ELR+PL +IGF+DLL + +G LN KQ +Y E IS S LL+++ND Sbjct: 555 RAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPLNEKQKRYTENISKSGNHLLDVIND 614 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LD++ ++ G ++L Y T+ + ++ EV++ ++ + NI I+ + L + +ADR + Sbjct: 615 VLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSADKNIIIESYIEKDLKTVIADRVK 674 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L QI IL+NA+ FSS+ V + A SV++ G I E + VF FV Sbjct: 675 LKQILYNILNNAIKFSSENGKVNIYAEPREDMIEISVEDEGIGIQESDYEKVFQPFVQID 734 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ GVGLGL++V+ F+ LHGG V + +S G + RIP Sbjct: 735 ESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGGSIFTFRIP 779 >gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii] gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 949 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 136/230 (59%), Gaps = 4/230 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L++ D +K+ F+ HVS+ELR+PLT+I+GF D + +GSLN KQ QY+ I Sbjct: 567 LEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSLNMKQEQYLTRIK 626 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+ T L ++ D+LDL+ V+AG + L++ + L L+++V + + ++ I++ S Sbjct: 627 ANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQSP 686 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 AD+ RL QI + +L NA+ ++ G V ++ + D D +++NG IP D Sbjct: 687 DPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPSD 746 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 +F+ F V R Q +G+GLGL+IV+ ++LHGG +++ S D+G Sbjct: 747 ALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQG 796 >gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 727 Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 143/554 (25%), Positives = 236/554 (42%), Gaps = 101/554 (18%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 IL+ + AIA+FD N +L N + W + FLA+ P D + E +N Sbjct: 13 ILNQIDNAIALFDPNSHLILFNLKLAQTWGLSSEFLASQPDCDTVFR---------EIVN 63 Query: 371 WKTWKENIFSVYKS----SETHKDTWHLP--NGQTLHVIVTSNPRGGTIWMFENLTV--- 421 W E K+ SE+ + L NG L V T P GG ++ F +T Sbjct: 64 QGYWSEEQCQHLKACLLKSESQGSAFCLEQNNGVCLEVYTTITPSGGCLFTFREVTPLRN 123 Query: 422 -QVDLETKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAFR--SLWKTEENR 473 Q L ++ L + G + D+L E +A F + +++ N AF + E + Sbjct: 124 SQASLNSEVRRLKFLLGLNERLQDSDNLRE-IAQFALNYLVRVMNAAFGDVKVVTGEGKQ 182 Query: 474 LSPGTHIRNIAATCSRYYNES----------------DG--WDLF----AAIITSFDDER 511 G NI++ Y E G W++ A + + + Sbjct: 183 RQAGAISNNISSQFVATYGEPVIAEMQQLLEKGIPYGQGLLWEVVETGEAVYVEDYANHP 242 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNA-----------------------QTML-----TFV 543 ++++G + + I P+P + ML T Sbjct: 243 QAMEG---FRHPGIGQLGIFPIPATNGGIIGVLTLESRNLEQLQAYPQRDMLYAACRTLG 299 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + +A+ L + NE L +A ++K+ F+ +S+ELR+PL +I+GF+DLLK G LN Sbjct: 300 TAIERAQAQDRLRQINEDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGELN 359 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +V+ I S LL L+NDILDL+ ++AG +LN + ++ L NE + I + Sbjct: 360 HRQINHVKLIEKSGQHLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRAD 419 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGD 718 + + + + D +L D +R+ QI +LSNA+ F+ + + L ++ GD Sbjct: 420 KKRLALSLELDYRLNQVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGD 479 Query: 719 F--------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 + V+++G IPED +F F RR G GLGL++ + Sbjct: 480 YRPDCSPVNASTPYLCLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTK 539 Query: 763 SFINLHGGHVSISS 776 LHGG VS+ S Sbjct: 540 RLAELHGGTVSLQS 553 >gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 625 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 141/252 (55%), Gaps = 2/252 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +++ AE E +A +A++ K+ F+ ++S+ELR+PL ++IGF+D+L G Sbjct: 370 FQDISQRKNAEENAIEAKKAAEQANQTKSEFLANMSHELRTPLNSVIGFSDILSKEVRGK 429 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN Q +YV I+ S + LL+L+NDILDL+ ++AG +L YS+ L++ L+E+ I Sbjct: 430 LNDSQKKYVSNITKSGSHLLSLINDILDLSKIEAGQKQLEYSSFDLHEALDEISILIKPL 489 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + NI +++ + ADR++ QI +LSNA F+ T+ + A ++ Sbjct: 490 ISKKNIDLQMDLPPEDSRVYADRKKFKQIMYNLLSNASKFTPDKGTITIVANQEKDKLKV 549 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V++ G IPE ++F F V +A + +G GLGLS+ + +HGG V + S Sbjct: 550 AVQDTGMGIPEADQATIFEPFQQVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLKSEVG 609 Query: 780 GVTTINCRIPSK 791 +T IP K Sbjct: 610 MGSTFTFTIPDK 621 >gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina mazei Go1] Length = 716 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/253 (39%), Positives = 146/253 (57%), Gaps = 7/253 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF ++T+ E+ L EK A A+ K+ F+ ++S+ELR+PL +IIGF+DLL G Sbjct: 460 TFRDITERKAIEKLLQEKQVA-EIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYG 518 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN KQ +Y IS S LLNL+NDILDL+ V+AG M+L+Y L D LN VK ++ Sbjct: 519 KLNEKQLKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSP 578 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 NI+I++ + L + AD R +QI ++ NA+ FS + + V ++A R G+F+ Sbjct: 579 IAARKNIKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARR-KGEFL 637 Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G I PED K +F F A ++ G GLGLS+V+ +NLHGG+V S Sbjct: 638 ETTVTDIGIGIKPEDQHK-LFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRS 696 Query: 777 SDEGVTTINCRIP 789 +T IP Sbjct: 697 IPGEGSTFAFAIP 709 >gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1028 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 2/251 (0%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++T R+E L + A K+ F+ ++S+ELR+PL +IIGF+D+L G Sbjct: 460 TGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFG 519 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN KQ +YV IS S LL L+NDILDL+ V+AG M L+YS ++ + EVK ++ Sbjct: 520 ELNEKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLFP 579 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 ++ I + G ADR RL+QI ++SNA+ F+ +G V + + + Sbjct: 580 LAQAKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSVYCKKSGSRAL 639 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 FSV + G I + K +F F + ++ Q G GLGL++V+ +NLH G + + S Sbjct: 640 FSVTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVESEL 699 Query: 779 EGVTTINCRIP 789 E +T IP Sbjct: 700 EKGSTFMFTIP 710 >gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 786 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 127/493 (25%), Positives = 233/493 (47%), Gaps = 31/493 (6%) Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371 L N+ +A++D L N+ F E ++ FL + + ++ + +L + E Sbjct: 22 LENMAQGVAMYDAEHRLVTWNQLFREYLDMPEEFLGSEHTFEDYIRYLALRGEFGEVDIE 81 Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431 +T I + S H+ P+G L V P GG I ++ ++T + E K Sbjct: 82 QTLARRIAQLKTS---HRFERIRPDGTVLEVRRDPVPGGGFIAIYTDITERKQAEMKLRE 138 Query: 432 LVKVQGETIDHLSE-GVAVFGPDGRIKLS-NPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 + + ID + G+ + D L NP+F L + + + G + ++ Sbjct: 139 -DEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCELVGKQADEVL-GQPLDDV------ 190 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLP---NAQTMLTFV 543 ++ ++G D AI+ + ERK Q + D ++++ PL + +FV Sbjct: 191 LHDPANG-DALVAIVDARSSERKEFQF---IRPDGTTRWTMVSQVPLDFRGEKAVICSFV 246 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D VRAE+ L E EA A +K++F+ ++S+ELR+PL IIG++++L N Sbjct: 247 DISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDAADDGN 306 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ I ++ LL L+NDILDL+ ++AG M + + L +++EVK + M Sbjct: 307 TAMVADLDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTIVGPMMQ 366 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGD 718 +N ++ V +G+ D +L Q +LSNA F+ +G TV L+ +RD + Sbjct: 367 KNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKEG-TVTLRISRDAMPDGSSA 425 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V ++G + E+ +F F R G GLGL+I + F+ + GG ++++S Sbjct: 426 IRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGGTIAVAS 485 Query: 777 SDEGVTTINCRIP 789 +T +P Sbjct: 486 EAGRGSTFTIELP 498 >gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 142/271 (52%), Gaps = 8/271 (2%) Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E S+ PL + +L + TD R ER+L EKN L +A++ K+ F+ +S+ELR+ Sbjct: 98 VEISLSPLRTPEGLLVTSAIRDTTDRKRIERSLQEKNAELERANQAKDRFLASMSHELRT 157 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL IIGF + L K G +N KQ +Y+E I LL+L+ND+LDL V AG ++L+ Sbjct: 158 PLNGIIGFAEFLADGKPGPVNGKQKEYLEDILNGGRHLLHLINDMLDLVKVQAGKLELHL 217 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 +T + D + EV + I + V D QR Q+ +LSNA+ F+ Sbjct: 218 ATFRIEDAIEEVCAGVRPLADNKRIGVHVEIAPGFSPITHDEQRFKQVLYNLLSNAIKFT 277 Query: 703 SKGSTVILKAARDNGD-FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 G V +K + D F SV++ G I PED+ + +F F + H + G GLGL Sbjct: 278 DDGGQVEVKVEQRGADRFCLSVRDTGIGIKPEDI-QRLFVEFEQLETGHARRFGGTGLGL 336 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + L GG +S+ S+ +T + +P Sbjct: 337 ALTRKIVELKGGTISVESAVGRGSTFSVTLP 367 >gi|91772785|ref|YP_565477.1| signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711800|gb|ABE51727.1| pleC-like signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 383 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 2/253 (0%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++ +S +R L E L A +K+ F+ +SYELR+PL +IIGF+D+L+T + Sbjct: 127 LLVALHAYESEILKRTLIETKIDLDDACHVKSDFLASMSYELRTPLNSIIGFSDVLRTEE 186 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +G LN KQ +Y++ +S S LL L+N +L+L +++G ++L + +++++ EVK + Sbjct: 187 IGPLNEKQLKYLKNVSTSGKELLELINGLLELLKIESGKVQLQVEDVDVSEVIQEVKVLL 246 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E NI + +GS ADR + + +++NA++F S T+ A D Sbjct: 247 EPRTVEKNISLVCNVRSDVGSIKADRAKFKDVLYDLINNAINFVSDDETIRCYATVHESD 306 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G IPE+ K+VF F V N H + +G GL L IV+ + LHGG + I S Sbjct: 307 LYVTIHYTGVGIPEEELKNVFQPFINVRNFHVQKYQGTGLRLPIVKKIVELHGGAIWIES 366 Query: 777 SDEGVTTINCRIP 789 E +T IP Sbjct: 367 KPENGSTFTFTIP 379 >gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 397 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 4/258 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + ++ N+ E L + + KNSF+ ++S+ELR+PL ++IGF+DLL Sbjct: 119 ECLMHTCNINGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLE 178 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G +N+KQS+YV I S LL ++N++LD++ ++AG L Y + + L+ EV+ Sbjct: 179 GAFGPMNTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRM 238 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ + I +++ D +G+ AD +L QI ++SNA+ F+ V++ A + Sbjct: 239 NLLSPASVKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVISACKKE 298 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 G V +NG I ED + +F F S+A RG G GLGL IV +F++LHGG +S Sbjct: 299 GVLEVKVSDNGIGISEDSYEKIFMPFTQADSSAARGY-GGAGLGLFIVRNFVDLHGGDIS 357 Query: 774 ISSSDEGVTTINCRIPSK 791 ++S +T IP+K Sbjct: 358 VNSEVGKGSTFTFTIPAK 375 >gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 995 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 147/265 (55%), Gaps = 4/265 (1%) Query: 529 SIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 +++ L +L FV ++T +AE L A++ K+ + +VS+ELR+PLT+I Sbjct: 724 TLMNLSGKPVILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSI 783 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IGF+D++ K+G LN Q++Y++ I S LL+L+NDILDLA +++G ++L+ I + Sbjct: 784 IGFSDVILKRKVGDLNDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISI 843 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 LLN+++ + + + + D + AD +L QI ++ NA+ F++KGS Sbjct: 844 PALLNDLESKLYPFASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNKGS- 902 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 V + + N + FSV + G IPED +F F RR G GLGL++V+ + Sbjct: 903 VTVTVRQKNDAYQFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLV 962 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 +HGG + + S + TT IPS Sbjct: 963 EIHGGQIWVESEESKGTTFTFTIPS 987 >gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199] gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199] Length = 727 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 177/364 (48%), Gaps = 18/364 (4%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSRYY 491 + +D SEG+A + D R+ + N A+R + L PG + A Sbjct: 355 QALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAV 414 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 D W + + R++L T+E+ D L P+ T+LT ++++ R Sbjct: 415 GREDAW------LQERLEVRRNLPYTVEIFRGDRWLLIREQRTPDGGTLLTATDISELKR 468 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E AL + E + A+ K +F+ +S+ELR+PL IIGF +++K+ ++ S + Q +Y Sbjct: 469 REDALVKAVEQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQIASNSDVQGEYA 528 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 YI S LL ++ND+LD++ ++AG + L+ L L++E + I K + +R+ Sbjct: 529 GYIHESGAHLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAEADGLRLA 588 Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 + + D LG DR+ QI +LSNA+ F+ G V L A RD G + V++ G Sbjct: 589 MATVDPGLG-IHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMVVRDTGI 647 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + + +F F + N H + G GLGL I ++ + HGG + S+ +T+ Sbjct: 648 GVEANRVVELFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHEGSTVTI 707 Query: 787 RIPS 790 + S Sbjct: 708 TLAS 711 >gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 761 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +AE AL A A+ K+ F+ ++S+EL++PL +IIGF+DLLK G LN Sbjct: 499 DITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPLN 558 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQS+YV++IS+S LL ++NDILDL+ ++G LN +++ +N+V + + Sbjct: 559 EKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQ 618 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E NI + S+ + AD + QI +LSNA+ F+ G ++ + ++ V Sbjct: 619 EKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQEGLLVTIEV 678 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 K+ G IPED + +F F+ R G GLGL++V+ ++ +HGG++ + S Sbjct: 679 KDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVES 733 >gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328] gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328] Length = 728 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 135/545 (24%), Positives = 240/545 (44%), Gaps = 83/545 (15%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 IL+ + AIA+FD + L N +W I + LA PS D++ + ++ KL + + Sbjct: 13 ILNQIDQAIALFDSSDRLILFNPQLAAIWGISVDQLAAQPSLDDICAEI-TSKKLWLKPD 71 Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLE 426 W+ ++ + + + H N L V + GG + F ++T Q+ L Sbjct: 72 WEHLRQTLRDCVRGEISFCIQQH--NQIYLEVHSQTTASGGRLLTFRDITDHRNTQLSLN 129 Query: 427 TKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLS--- 475 T+ L + G + D+L + +A F + + +N AF + + ENR++ Sbjct: 130 TEVRRLRFLLGLNERLQDSDNL-DNIAQFALNYLVNTTNAAFGDVKVILGEGENRITGML 188 Query: 476 --------------PGTHIRNIAATCSRYYNESDGWDL-----------FAAIITSFDDE 510 P A + Y E WD+ +A +F Sbjct: 189 GNQISGHFVATYGEPAVAEMKAALSQGIPYGEGLLWDVVRTGEPRFVRDYANHPKAFSPF 248 Query: 511 RKSLQGTLELLSDSVLEYSIIPL--------------PNAQTML----TFVNVTDSVRAE 552 R G L + II + P + T + A+ Sbjct: 249 RHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAEAQ 308 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 L + NE L +A ++K+ F+ +S+ELR+PL +++GF DLLK G+LNS+Q V++ Sbjct: 309 ERLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQF 368 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL+L+NDILDL+ +++G +LN ++ +++L +E + + + + + + + Sbjct: 369 IEKSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLE 428 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDF-------- 719 SD ++ DR+R+ QI +LSNA+ F+ +G V L ++ GD+ Sbjct: 429 SDYRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPIN 488 Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 V+++G IP+D +F F + ++ + G GLGL + + LHGG Sbjct: 489 DSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGT 548 Query: 772 VSISS 776 VS+ S Sbjct: 549 VSLQS 553 >gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 830 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 104/352 (29%), Positives = 168/352 (47%), Gaps = 47/352 (13%) Query: 450 FGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 G DG I +NPA L W T R P D W IIT Sbjct: 473 IGIDGAILHANPASEPLLSEWATGMGRKVP------------------DEWH---GIITE 511 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRK- 564 + LQ L ++ VL +++P+ A + + +V+D V AER L + NE L + Sbjct: 512 VLATGRQLQAELPVIG-RVLSLTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLERR 570 Query: 565 -----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606 A K+ F+ +S+ELR+PL IIGF++++ S G L NS+ Sbjct: 571 VEERTRDLVRAKEQAELASRSKSEFLATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRY 630 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y I S LL ++NDILD++ ++AG M L++ + + +++ + + T+ N+ Sbjct: 631 QEYAGDIVQSGRHLLAVINDILDVSKIEAGQMSLDFGPVDIPPVIDSAVRLVETRARANS 690 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +R++ D L DR+R LQI +LSNA+ F+ +G V + A+R+N V++ Sbjct: 691 LRLRSEVDKDLPIIDGDRRRCLQILVNLLSNAIKFTPEGGQVTIGASRENDGIRLKVQDT 750 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + E + F V + Q G GLGL + +S + LHGG + ++S Sbjct: 751 GIGMSESEIQVALEPFRQVDGSLSRQYEGTGLGLPLAKSMVELHGGSLVVNS 802 >gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 975 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 20/379 (5%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E + T ++ ID++ +GV VF D R+ N R L E + GT N+ A Sbjct: 584 EQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIETGTS--NLEA 641 Query: 486 TCSRYYNESDGWDLFAAIITSFD--------DERKSLQGTLELLSDSVLEYSIIPLPNAQ 537 Y + AI+ D R+ + + SVLE +P Sbjct: 642 LLL-YLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARP--NGSVLEIRSTAMPGGG 698 Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +LTF ++TD + E L E +A + + K +F+ ++S+ELR+PL IIGF++L+K Sbjct: 699 LILTFTDITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAIIGFSELMKHE 758 Query: 598 KLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G L + YV+ + S LL L+NDILD++ +AG+ L S + + ++ + Sbjct: 759 IFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLR 818 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N I ++ + DG L AD +R+ QI +LSNA+ F+ G V + A D Sbjct: 819 MMDKRASANGISLEADLPDG-LAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTAQVD 877 Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + V + G + PEDM K V FV R R+ G GLGL + ++ +N HGG + Sbjct: 878 GRGMVIEVIDTGIGMTPEDMDK-VMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTM 936 Query: 773 SISSSDEGVTTINCRIPSK 791 + S + TT+ P + Sbjct: 937 ELHSIPDHGTTVTVTFPPE 955 >gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 617 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/384 (28%), Positives = 191/384 (49%), Gaps = 41/384 (10%) Query: 413 IWMFENLTV-QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471 +W+ + L V +++LET+ L+ + S+ + VF D R+ NPA + L ++ Sbjct: 269 VWVNKYLQVHRIELETEKKNLI------FNASSDAILVFS-DNRLIQVNPAGKKLLGIDQ 321 Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531 G H++++ C +E D + I R + L LE Sbjct: 322 L----GEHLQDLDKICDVGIDEILNLDSPSII-------RIETSIGIRELEVRKLEPEN- 369 Query: 532 PLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 PN Q ++T +VT+ R+ D K++F+ VS+ELR+PL +++GF Sbjct: 370 --PNDNQKIITMRDVTEQ--------------RELDRAKSNFISMVSHELRTPLNSVLGF 413 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +++ + G L+ +Q +++EYI ASS L+ LV+DILDL+ +DAG L+ S ++ + Sbjct: 414 ANVILSGATGPLSDRQREFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEII 473 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +V ++ E NI + +SD K+ AD +R+ Q+ ++ NA+ F+ G VI+ Sbjct: 474 AKQVVSQLSGLAAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIV 533 Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767 + R+ GD + FSV + G I E+ +F RF Q +G GLGL+I +S + Sbjct: 534 R-VRNQGDHVLFSVSDTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQ 592 Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791 HGG + + S+ T +P K Sbjct: 593 HGGKIWVDSTPGQGATFYFTLPIK 616 >gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 728 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 134/545 (24%), Positives = 239/545 (43%), Gaps = 83/545 (15%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 IL+ + AIA+FD + L N +W I + LA PS DE+ + ++ KL + Sbjct: 13 ILNEIDQAIALFDSSDRLILFNPQLASIWGISVDQLAAQPSLDEICAEI-TSQKLWSKPE 71 Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLE 426 W+ ++ + + + H N L V + P G + F ++T Q+ L Sbjct: 72 WEHLRQTLRDSVRGEISFCIQQH--NQIYLEVHSHTTPSGRRLLTFRDITDYRNTQLSLN 129 Query: 427 TKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLS--- 475 T+ L + G + D+L + +A F + + +N AF + + ENR++ Sbjct: 130 TEVRRLRFLLGLNERLQDSDNLDK-IAQFALNYLVHTTNAAFGDVKVILGEGENRITGML 188 Query: 476 --------------PGTHIRNIAATCSRYYNESDGWDL-----------FAAIITSFDDE 510 P + Y E WD+ +A +F Sbjct: 189 GNQISGQFIATYGEPAVAEMKALLSQGIPYGEGLLWDVVRTGEPIFVQDYANHPKAFSPF 248 Query: 511 RKSLQGTLELLSDSVLEYSIIPL--------------PNAQTML----TFVNVTDSVRAE 552 R G L + II + P + T + +A+ Sbjct: 249 RHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAQAQ 308 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 L + NE L +A ++K+ F+ +S+ELR+PL +++GF DLLK G+LNS+Q V++ Sbjct: 309 ENLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQF 368 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL L+NDILDL+ +++G +LN + +++L +E + + + + + + + Sbjct: 369 IEKSGLHLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKMVQPRADKKCLALSLE 428 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDF-------- 719 SD ++ + D++R+ QI +LSNA+ F+ +G V L ++ +GD+ Sbjct: 429 SDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYGSQIDGDYRPDCSPIN 488 Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 V+++G IP+D +F F + ++ + G GLGL + + LHGG Sbjct: 489 DSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGT 548 Query: 772 VSISS 776 VS+ S Sbjct: 549 VSLQS 553 >gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] Length = 773 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/412 (28%), Positives = 197/412 (47%), Gaps = 51/412 (12%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T Q DL + + I+++SE ++ +GR+ +SN F + L Sbjct: 377 FVEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 427 Query: 476 PGTHIRNIAATC----SRYY-NESDGWDLFAAIITSFD------DERKSLQGTLELLSDS 524 G + A S Y+ E DG +I + D +ER++ G L + Sbjct: 428 SGIQRATVTAMARPAISEYFLKEDDGTGNLTSIRQTADGFWLKINERRTQDGGLVCIGTD 487 Query: 525 VLE---------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALR 563 + E +S I NAQ T V + S++AE+ E+ E+ Sbjct: 488 ISELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLQAEK---ERAESAN 544 Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLN 622 KA K+ F+ ++S+ELR+PL I+GF+D++ S G L S++ +Y+ I S T LL Sbjct: 545 KA---KSEFLANISHELRTPLNAILGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLT 601 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD++ ++AG L+ + L +++E +++ + E I I KL + + Sbjct: 602 LINDILDMSKIEAGRFTLDCKNVDLEPIISEAIRTLTPQAQEKKISITANIAPKLHAEL- 660 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + + QIF ++SNA+ F+ G ++ + A + + IF +K+ G IP+ K + F Sbjct: 661 DCRAMRQIFLNLISNAVKFTPSGGSIDICAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPF 720 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I+S +E TT+ IP K+ Sbjct: 721 EQVENQFTKTHTGSGLGLAISRSLLELHKGKLEIASEEENGTTVTITIPIKQ 772 >gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 707 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 2/251 (0%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V +T+ + E L + A+ K+ F+ ++S+ELR+PL +IIGF+DLL G Sbjct: 454 TGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYG 513 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN++Q + V IS S LLNL+N+ILDL+ V+AG +L+YST L D+ EV+ + Sbjct: 514 ELNARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFP 573 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 I++++ + L DR+R+ Q+ S +++NA+ FS++ S V +KA+++N Sbjct: 574 FAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQNNNFIE 633 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G I + +F F + ++ + +G GLGL++V+ + LHGG V S Sbjct: 634 VSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEV 693 Query: 779 EGVTTINCRIP 789 +T IP Sbjct: 694 GKGSTFGFSIP 704 >gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 557 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + +LT ++T + E AL E E AD K++F+ ++S+E+R+PL I+GF++LL Sbjct: 159 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + ++ +Y+E + +S +LL LVNDILDL+ ++AG ++ YS + +N LLN+++Q Sbjct: 219 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 275 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 K+ N+ +++I++ L S + DR R+ Q+ S +SNA+ F+++GS I + Sbjct: 276 LFRMKIGSNS-PVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 334 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +NG F V + GS I D + VF+RFV + + G GLGLSI ++ +N GG + Sbjct: 335 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 391 Query: 775 SS 776 S Sbjct: 392 ES 393 >gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 556 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + +LT ++T + E AL E E AD K++F+ ++S+E+R+PL I+GF++LL Sbjct: 158 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 217 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + ++ +Y+E + +S +LL LVNDILDL+ ++AG ++ YS + +N LLN+++Q Sbjct: 218 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 274 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 K+ N+ +++I++ L S + DR R+ Q+ S +SNA+ F+++GS I + Sbjct: 275 LFRMKIGSNS-PVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 333 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +NG F V + GS I D + VF+RFV + + G GLGLSI ++ +N GG + Sbjct: 334 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 390 Query: 775 SS 776 S Sbjct: 391 ES 392 >gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 557 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + +LT ++T + E AL E E AD K++F+ ++S+E+R+PL I+GF++LL Sbjct: 159 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + ++ +Y+E + +S +LL LVNDILDL+ ++AG ++ YS + +N LLN+++Q Sbjct: 219 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 275 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 K+ N+ +++I++ L S + DR R+ Q+ S +SNA+ F+++GS I + Sbjct: 276 LFRMKIGSNS-PVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 334 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +NG F V + GS I D + VF+RFV + + G GLGLSI ++ +N GG + Sbjct: 335 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 391 Query: 775 SS 776 S Sbjct: 392 ES 393 >gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 565 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 194/391 (49%), Gaps = 47/391 (12%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E ++ +LV+ I V G DGR++ N ++ LS I + Sbjct: 187 EARFRSLVEAAASII-------VVVGADGRVREFNREAERMFG-----LSAAAAIGRAWS 234 Query: 486 T---CSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTML 540 T +R + D +D + D+ RK Q +L ++ +++ PL + ++ Sbjct: 235 TILDSNRVGQDGDRFDQW------LDEVRKGWQVRDRETVLGQHIISWNLAPLSDDDGIV 288 Query: 541 TF-VNVTDSVRAERALTEKNEAL---------------RKADEI---KNSFVQHVSYELR 581 ++T RAE AL + N+ L R+A+E K+ F+ ++S+ELR Sbjct: 289 IVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHELR 348 Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL IIGF+D ++ +G + N ++YV+ I S T LL+++ND+LDL+ V+AG L Sbjct: 349 TPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHFDL 408 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + L L +V + +A K + + +++ DG G + D RL Q+ +L+NA+ Sbjct: 409 APERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANAVK 468 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVS-NAHRGQRR-GVGLG 757 F+ G VIL RD+G V ++G + PED+ + V FV ++H +R G GLG Sbjct: 469 FTPAGGHVILSLGRDDGGSWIKVADSGIGMRPEDIDR-VLEPFVQIDSHLSRRNMGTGLG 527 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788 L + + FI LHGG ++++S T + R+ Sbjct: 528 LPLAKRFIELHGGTLALASQPGQGTVVTIRL 558 >gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 726 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 2/251 (0%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V +T+ E L + A+ K++F+ ++S+ELR+PL +IIGF+DLL G Sbjct: 470 TGVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYG 529 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN KQ++ V IS S LLNL+N+ILDL+ V+AG +L+YST L ++ EV+ I Sbjct: 530 ELNLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFP 589 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 ++I++ D L AD++R+LQ+ S +++NA+ FS++ V +KA + +G Sbjct: 590 FATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDGFLK 649 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V ++G I + +F F + ++ + +G GLGL++V+ + LHGG V S Sbjct: 650 ITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESEV 709 Query: 779 EGVTTINCRIP 789 + IP Sbjct: 710 GKGSVFGFSIP 720 >gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] Length = 991 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 144/248 (58%), Gaps = 6/248 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E+ L +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 607 ITERKKMEQELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 663 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ E++ S K+ Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKS 723 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +N++++ ++ + ++ RL Q+ ++NA+ F+S+GS + R N + F V Sbjct: 724 DNVKLEFVAPEEPCFANIEKNRLSQLIINFVTNAIKFTSQGS-IRFGYERQNNELYFYVT 782 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D S+F RFV Q G GLGLSI + IN GG + + S + +T Sbjct: 783 DTGCGIPQDKLDSIFGRFVKLNSFAQ--GTGLGLSICRTLINHMGGKIGVESEEGKGSTF 840 Query: 785 NCRIPSKE 792 +P K+ Sbjct: 841 WFTLPYKQ 848 >gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] Length = 554 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 13/248 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V D R ++ L E EA R A+ E K +F+ ++S+E+R+PL I+GF LL T+ Sbjct: 163 VLLTVRDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLLGTA 222 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + + YVE I ++ +LL LVNDILD++ ++AG ++ Y+ + +N ++ E++ Sbjct: 223 S----DQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGI 278 Query: 658 IATKMHENNIRIKVISDGKLG-SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ E ++ +++I + KL F+ ++ R+ Q+ S LSNA ++ +GS + R+ Sbjct: 279 FRLRLEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQGSITMGYEIRE 338 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 NG F V + G+ IPED VF RF +R+G GLGLSI + I GG + ++ Sbjct: 339 NG-ICFYVSDTGTGIPEDKVSQVFERFTK--LDAKRQGTGLGLSISRTIIKKMGGEIGVT 395 Query: 776 SS-DEGVT 782 S EG T Sbjct: 396 SKYGEGST 403 >gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 773 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 117/411 (28%), Positives = 194/411 (47%), Gaps = 50/411 (12%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T Q DL + + I+++SE ++ +GR+ +SN F + L Sbjct: 378 FAEETAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQILQ 428 Query: 476 PGTHIRNIAATCSRYYNE----SDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525 PG + A NE DG +I + D +ER++ G L + + Sbjct: 429 PGIQRETVEAMARPAINEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDI 488 Query: 526 LE---------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRK 564 E +S I NAQ T V + S++AE+ E+ E+ K Sbjct: 489 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEK---ERAESANK 545 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNL 623 A K+ F+ ++S+ELR+PL I+GF+D++ S G L SK+ +Y+ I S + LL L Sbjct: 546 A---KSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTL 602 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +NDILD++ ++AG ++ I L +++E +++ + E NI + KL + V D Sbjct: 603 INDILDMSKIEAGRFTVDCKNIDLEPIISEALRTLIPQAQEKNIFVTTNIATKLHAEV-D 661 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 + + QIF ++SNA+ F+ G + + A + + +F +K+ G IP+ K + F Sbjct: 662 GRAIKQIFLNLISNAVKFTPSGGNIDVCALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFE 721 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I S + TT+ IP K+ Sbjct: 722 QVENQLTKTYTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITIPIKQ 772 >gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 772 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 116/430 (26%), Positives = 197/430 (45%), Gaps = 49/430 (11%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI T + R I + ++T Q L +Y + + I+ SE ++ R+ + N Sbjct: 352 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 411 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509 F+ W+ ++ L PGT + A +R E D + + + Sbjct: 412 THFQQAWQLPDHVLVPGTERTIVQAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 471 Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545 ER++ G L + + L S I L + L+ N Sbjct: 472 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLEQQKAELSVANA 531 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604 ERA EA A+ K+ F+ ++S+ELR+PL I+GF+++L+ G L S Sbjct: 532 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 583 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K +Y I S LLN++NDILD++ ++AG M++ I L L+ E + + Sbjct: 584 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQ 643 Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 NIR ++ +S G + ADR+ + Q+ +LSNA+ F+++G + L+A + G ++ Sbjct: 644 KNIRVVQQVSSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 701 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G IP D + + F V + + + G GLGL+I S LHGG + I S++ Sbjct: 702 ADSGIGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHSTENVG 761 Query: 782 TTINCRIPSK 791 T I+ RIP + Sbjct: 762 TIISVRIPDR 771 >gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM 17393] Length = 1039 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E+ LT E +++ +K++F+ ++S+E+R+PL I+GF+ +L +++ Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEE---EQ 710 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++ ++ Sbjct: 711 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKT 770 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++++ + ++ RL Q+ +++NA+ F+ KGS R+N + F V Sbjct: 771 DAVKLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMREN-ELYFYVA 829 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +++F RFV Q G GLGLSI ++ I GG + + S + +T Sbjct: 830 DTGCGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICQTLIERMGGRIGVESEEGKGSTF 887 Query: 785 NCRIPSK 791 +P K Sbjct: 888 WFTLPYK 894 >gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 391 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 164/304 (53%), Gaps = 15/304 (4%) Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549 + + G+ A + E+KS++ D+V+ S L + M LT ++T Sbjct: 94 FEQRRGFTDLNATLNVLTSEKKSVE------CDAVISGSYFLLNEEENMVLTVHDITQLK 147 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE+ L E AD K++F+ ++S+E+R+PL I GF ++L ++ + +++QY Sbjct: 148 QAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITGFAEILASA---NTEEEKAQY 204 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ +LL LVNDILD++ ++AG ++ Y+ + +N LL++++Q K+++ I Sbjct: 205 QEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMKVNDAGGNI 264 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++I++ L S DR R+ Q+ S +NA+ F+ +G+ I ARD + F V + G Sbjct: 265 QIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEGTISIGYEARDT-ELYFYVTDTG 323 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + IP D VF RFV ++G GLGLSI ++ +N G + S + +T Sbjct: 324 AGIPADKLPEVFGRFVK--LNKDKKGTGLGLSISKTIVNKLEGQIGADSVEGKGSTFWFT 381 Query: 788 IPSK 791 IP + Sbjct: 382 IPYR 385 >gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 740 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ AE+ L EK A A+ K+ F+ ++S+ELR+PL +IIGF+DLL G LN Sbjct: 467 DVTERKEAEKLLQEKQVA-EVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDLN 525 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + V IS S LLNL+NDILDL+ V+AG ++L Y L+ LN +K ++ Sbjct: 526 EKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIAD 585 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 I +++ D L + AD R QI +L NA+ FS + V + A R +V Sbjct: 586 RKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKRKGDTVEITV 645 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G I + +F F A ++ G GLGL++V+ +NLHGG++ +S Sbjct: 646 KDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIGEG 705 Query: 782 TTINCRIP 789 +T IP Sbjct: 706 STFAFTIP 713 >gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] Length = 391 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 176/331 (53%), Gaps = 24/331 (7%) Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522 TEE R+ RN A C ++ + AI +F+ R L+ TL +++ Sbjct: 54 TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112 Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 D+V+ S L + M +T +VT +AE+ L E KAD K++F+ Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLA 172 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+E+R+PL I GF ++L ++ + +++QY E I ++ +L+ LVNDILD++ ++ Sbjct: 173 NMSHEIRTPLNAITGFAEVLGSA---TTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIE 229 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692 AG ++ +T+ +N LL++++Q ++ + I++I++ S + DR R+ Q+ S Sbjct: 230 AGTLEFVQTTVDVNQLLSDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLS 289 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 NA+ F+ KGS + ARD + F VK+ G+ IP + VF RFV ++ Sbjct: 290 NFAGNAIKFTHKGSIRLGYEARDT-ELYFYVKDTGTGIPAEKLPDVFERFVK--LNKDKK 346 Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 G GLGLSI ++ + GG + +S + EG T Sbjct: 347 GAGLGLSISQTIVAKLGGQIGANSVEGEGST 377 >gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 572 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 144/264 (54%), Gaps = 8/264 (3%) Query: 521 LSDSVLE----YSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 LS+ VL YS L + +L + ++TD+ + + L A + K+ F+ Sbjct: 273 LSNGVLRDVERYSYPILMGGKKLLYAIVSDITDNRKMQSELVRAKMEAEIASKAKSEFLA 332 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 +S+ELR+PL +IIGF+D+L T G LN KQ +YV IS S LL L+N ILDL+ V+ Sbjct: 333 SMSHELRTPLNSIIGFSDMLLTQNFGPLNKKQLRYVNNISVSGNHLLKLINGILDLSKVE 392 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AG M+L + D ++EVK + + +I+I + D +L + ADR + QI + Sbjct: 393 AGKMELKVEEFSVLDSISEVKVLLTPLASKKDIQILSVVDKELTTIRADRTKFKQILYNL 452 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752 + NA+ F+ + VI+ A + VK+ G I + K +F F + N+ G+++ Sbjct: 453 VDNAIKFTHEDGFVIVDARVEGDQAKIMVKDTGIGISKAGVKKIFQPFTQLENSEYGKQK 512 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGLS+V+ F+ +H G + + S Sbjct: 513 GTGLGLSLVKKFVEMHTGKIWVES 536 >gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 391 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 163/304 (53%), Gaps = 15/304 (4%) Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549 + + G+ A + E+KS++ D+V+ S L + M LT ++T Sbjct: 94 FEQRRGFTDLEATLNVLTSEKKSVE------CDAVISGSYFLLNEEENMVLTVHDITQLK 147 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E+ LT E AD K++F+ ++S+E+R+PL I GF ++L ++ + +++QY Sbjct: 148 ETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITGFAEVLASA---NTEEEKAQY 204 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ +LL LVNDILD++ ++AG ++ Y+ + +N LL++++Q ++++ I Sbjct: 205 QEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMRVNDAGKNI 264 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++I++ L S DR R+ Q+ S +NA+ F+ +G+ I ARD + F V + G Sbjct: 265 RIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEGTISIGYEARDT-ELYFYVTDTG 323 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + IP D VF RFV ++G GLGLSI ++ +N G + S + +T Sbjct: 324 AGIPADKLPEVFGRFVK--LNKDKKGTGLGLSISKTIVNKLEGQIGADSVEGKGSTFWFT 381 Query: 788 IPSK 791 IP + Sbjct: 382 IPYR 385 >gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 742 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 7/253 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF ++T E+ + EK A A+ K+ F+ ++S+ELR+PL +IIGF+DLL G Sbjct: 473 TFRDITGKKAVEKLIQEKQIA-EIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFG 531 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN KQ +Y IS S LL+L+NDILDL+ V+AG M+L+Y+ L LN +K +A Sbjct: 532 ELNEKQLRYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAP 591 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 +I+I++ D +L + AD + QI ++ NA+ F+S+ S V + AR GD + Sbjct: 592 IADRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNV-GARMKGDKV 650 Query: 721 -FSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +V + G+ I PED K +F F V Q +G GLGL +V+ + +H G+V S Sbjct: 651 EITVTDIGAGIKPEDQHK-LFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRS 709 Query: 777 SDEGVTTINCRIP 789 +T IP Sbjct: 710 VPGEGSTFAFAIP 722 >gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 772 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/398 (26%), Positives = 190/398 (47%), Gaps = 38/398 (9%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q DL + + I+++SE ++ +GR+ +SN F + L G Sbjct: 381 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQ 431 Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV--LE 527 + A S Y + DG +I + D +ER++ G L + L+ Sbjct: 432 RATVEAMARPAISEYLLKEDGTGNLTSIRQTADGCWLKINERRTQDGGLVCTGTDISELK 491 Query: 528 YSIIPLPNAQ-TMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574 N++ ++ +F+ T+ + ++L + E A++ K+ F+ Sbjct: 492 QQQEKFKNSEKSLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLA 551 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633 ++S+ELR+PL I+GF+D++ S G L S++ +Y+ I S T LL L+NDILD++ + Sbjct: 552 NISHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKI 611 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG L+ I L +++E +++ + E + + KL + V D + + QIF Sbjct: 612 EAGRFTLDCKNIDLGPIISEAVRTLTPQAQEKKVSVTENIAPKLHAEV-DCRAIRQIFLN 670 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 ++SNA+ F+ G + + A + + IF +K+ G IP+ K + F V N Sbjct: 671 LISNAVKFTPSGGNIDVCAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTH 730 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I S + LH G + I+S +E TT+ +P Sbjct: 731 TGSGLGLAISRSLVKLHKGKLEITSKEEKGTTVTITMP 768 >gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 582 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 149/275 (54%), Gaps = 12/275 (4%) Query: 527 EYSIIPLPNAQTMLTFV----------NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 E IIP+ + T+L + ++T+ + E+ L + A+ ++ F+ ++ Sbjct: 300 ENDIIPVEISSTILNYEGKSSIVSVIRDITEHKQHEQELLDAKVKAENANTAQSEFIHNI 359 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL + IGF++++ T LG LN KQ +Y+ + S LL+L+N+IL+++ ++ G Sbjct: 360 SHELRTPLNSTIGFSEMMITEVLGPLNDKQKKYLNNVKISGKHLLSLINEILNISKIENG 419 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 ++L + + + +V+ +A + EN + V + +G F ADR +L QI ILS Sbjct: 420 EVELELDEVDIYTTVEDVEMLMAPILAENKNELIVNIEANVGKFTADRLKLKQILYNILS 479 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754 NA+ FS + +I+ +G ++ + G + E ++F FV + H +++G Sbjct: 480 NAIKFSPENENIIMDIKVIDGKLQTNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGT 539 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+IV+ F+ LH G + I S + TT IP Sbjct: 540 GLGLTIVKRFVQLHKGKIWIDSEEGKGTTFCFTIP 574 >gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 391 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 176/333 (52%), Gaps = 28/333 (8%) Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522 TEE R+ RN A C ++ + AI +F+ R L+ TL +++ Sbjct: 54 TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112 Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 D+V+ S L + M +T +VT +AE L E KAD K++F+ Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLA 172 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLAT 632 ++S+E+R+PL I GF ++L GS N+++ +QY E I ++ +L+ LVNDILD++ Sbjct: 173 NMSHEIRTPLNAITGFAEVL-----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSK 227 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQI 690 ++AG ++ +T+ +N LL++++Q +++E I++I++ S + DR R+ Q+ Sbjct: 228 IEAGTLEFVQTTVDVNLLLSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQV 287 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 S NA+ F+ +GS I ARD + F VK+ G+ IP + VF RFV Sbjct: 288 LSNFAGNAIKFTHEGSIRIGYEARDT-ELYFYVKDTGAGIPAEKLPDVFERFVK--LNKD 344 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 ++G GLGLSI ++ + GG + S + EG T Sbjct: 345 KKGAGLGLSISQTIVAKLGGQIGADSVEGEGST 377 >gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 996 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 4/262 (1%) Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I L +L FV +T +AE +L A + K+ + +VS+ELR+PLT+IIG Sbjct: 734 IDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIG 793 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F+D+L KLG LN Q Y+ + S LL+L+ DILDL+ +++G +L+ + + Sbjct: 794 FSDILLKGKLGDLNESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQ 853 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ ++K++I + + I + + + AD+ +L QI ++ NA+ F+ +GS V Sbjct: 854 LMKDLKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGS-VT 912 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 +K ++ D +FSV + G IP D +F+ F RR G GLGL++VE + + Sbjct: 913 VKLDWNDNDMLFSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEM 972 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG + + S + + + IP Sbjct: 973 HGGKIWVESEEREGSRFSFIIP 994 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 140/277 (50%), Gaps = 11/277 (3%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYE 579 E+S+ L + + ++T +AE + + N L +A +K+ F+ +S+E Sbjct: 727 EFSLTLLEDGGLIRVCRDITQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHE 786 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 LR+PL I+G ++ L+ GS+ +Q + + I S LL L+ND+LDLA +++G M+ Sbjct: 787 LRTPLNAILGLSEALQEEVYGSITDRQRKSLSTIQGSGQHLLELINDLLDLAKIESGKME 846 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L+ + L L N + + H NI++ KL D +R+ Q+ +LSNA+ Sbjct: 847 LHICAVSLQKLCNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAV 906 Query: 700 DFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 F+ G +VILKA D FSV + G I ++ +F FV R RR G G Sbjct: 907 KFTPTGGSVILKAEEDLLRNTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTG 966 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 LGL++V+ I +HGG V + S + +P K+ Sbjct: 967 LGLALVQRTIEIHGGRVDVESEVGQGSCFRVTLPIKQ 1003 >gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 713 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 5/233 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L E E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 325 DITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL--AETDEIE 382 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+ + ++ +LLNL++DILD++ ++AG ++L + + L EV + + K H Sbjct: 383 LRQA-YMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATFSHKKH 441 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + ++ AD+ R++Q+ S ++NA+ F++KGS + D+G F V Sbjct: 442 DGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTKGSITLSYTLNDDGQVRFCV 501 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + C +FNRFV Q G GLGLSI +S + GG + + S Sbjct: 502 TDTGKGIPAEQCHDIFNRFVKLDSFVQ--GAGLGLSICQSLVERMGGKIGVES 552 >gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus DSM 14838] Length = 1039 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E+ LT E +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++ ++ Sbjct: 711 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKT 770 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++++ + ++ RL Q+ +++NA+ F+ KGS R+N + F V Sbjct: 771 DAVKLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMREN-ELYFYVA 829 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +++F RFV Q G GLGLSI ++ ++ GG + + S + +T Sbjct: 830 DTGCGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICKTLMDHMGGRIGVESEEGKGSTF 887 Query: 785 NCRIPSK 791 +P K Sbjct: 888 WFTLPYK 894 >gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 818 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 147/264 (55%), Gaps = 16/264 (6%) Query: 541 TFVNVTDSVRA-----ERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNII 588 F +++D +R+ E+ +TEK E AL++A+ +K+ F+ ++S+ELR+PL II Sbjct: 264 AFNDMSDKLRSSYAMLEQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAII 323 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF ++LK G LN++Q +V+ I +S LL ++NDILDL+ ++AG M+L Y + +++ Sbjct: 324 GFAEVLKDKLCGELNAEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVS 383 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 D + +V + + +++K + + ADR + QI +LSN++ F+ + T+ Sbjct: 384 DAIEDVYTILKGLAKKKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTI 443 Query: 709 ILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 AA +G SV ++G I PED K VF F ++ + G GLGL++ + Sbjct: 444 TTNAAIVDGKMQVSVSDSGIGIKPEDREK-VFKEFWQADSSFSRKYEGTGLGLALTRRIV 502 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 +HGG + + S +T IP Sbjct: 503 EMHGGKIWLKSEYGKGSTFYFTIP 526 >gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] Length = 518 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 141/267 (52%), Gaps = 11/267 (4%) Query: 533 LPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNI 587 L NA TML + D V E A +EA R+A+ K+ F+ +S+ELR+PL I Sbjct: 222 LKNANTMLEYRADKDHLIVELESANAMSDEARRRAEAANLAKSRFLATMSHELRTPLNAI 281 Query: 588 IGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +GF++++K LG +++K Q Y E I S LLNL+N+ILDL+ ++AG +L+ I Sbjct: 282 LGFSEIMKDEVLGKMHNKNYQSYAEDIHGSGQHLLNLINEILDLSRIEAGRHELHEEPIF 341 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L+D++ E + + I + + L AD + L Q+ +LSNA+ F+ Sbjct: 342 LDDIVEECGTMMKVRAKAKTISLHHTHEPDLPRVWADERALRQVVLNLLSNAVKFTPVNG 401 Query: 707 TVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762 V +K D G ++ S+K+ G IPED +V F +H + G GLGLSIV+ Sbjct: 402 EVWIKVGPTSDGGQYV-SIKDTGPGIPEDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQ 460 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 + +N+H G S+ S T + +P Sbjct: 461 ALVNMHDGKFSLKSKPGEGTEVIVTLP 487 >gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 391 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 164/297 (55%), Gaps = 24/297 (8%) Query: 502 AIITSFDDERK--SLQGTLELLS--------DSVLEYSIIPLPNAQTM-LTFVNVTDSVR 550 AI +F+ R L+ TL +++ D+V+ S L + M +T +VT + Sbjct: 89 AIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQ 148 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQ 608 AE L E KAD K++F+ ++S+E+R+PL I GF ++L GS N+++ +Q Sbjct: 149 AENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFAEVL-----GSANTEEEKAQ 203 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E I ++ +L+ LVNDILD++ ++AG ++ +T+ +N LL++++Q +++E Sbjct: 204 YQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLLSDLQQLFQMRVNEAGEN 263 Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I++I++ S + DR R+ Q+ S NA+ F+ +GS I ARD + F VK+ Sbjct: 264 IQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGSIRIGYEARDT-ELYFYVKDT 322 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 G+ IP + VF RFV ++G GLGLSI ++ + GG + S + EG T Sbjct: 323 GAGIPAEKLPDVFERFVK--LNKDKKGAGLGLSISQTIVAKLGGQIGADSVEGEGST 377 >gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 770 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 139/242 (57%), Gaps = 5/242 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AE+ E+N+A A+ K+ F+ ++S+ELR+PL IIGF++++++ G L S K ++Y Sbjct: 513 AEKYSEERNKA-EDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSEKYAEY 571 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL+++NDILD++ ++AG M+L + L+D++ + + A E NI + Sbjct: 572 CTDIKGSGTYLLDVINDILDMSKIEAGRMQLEVEDLALDDIIADALRVTAVNGDEKNIAM 631 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + L + DR+ L QI +LSNA+ F+ +G + +KA + + ++++ G Sbjct: 632 TMAAAPNL-AIKGDRRALKQILLNLLSNAVKFTPEGGNIAVKARINGAAAVIAIEDTGIG 690 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I +D + F V + +G GLGL+I +S + LHGG + I S + TT+ R Sbjct: 691 IAKDALARIGRPFEQVESQFTKTHKGSGLGLAIAKSLVELHGGAMRIRSVEGRGTTVIVR 750 Query: 788 IP 789 +P Sbjct: 751 LP 752 >gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 835 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 18/312 (5%) Query: 487 CSRYYNE-SDGWDLFAAIIT-----SFDDERK-SLQGTLELLSDSVLEYSIIPL-----P 534 C ++ N +D WD + + SF DE +Q + D V ++ PL P Sbjct: 242 CDQWLNPPTDNWDFPLSSLPNDSPESFVDEDSLDIQPSPIPDQDKVWQFIKCPLTTDKLP 301 Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 ++ +VT + + L KN L + + +K+ F+ +S+EL+SPLT ++G + LL Sbjct: 302 IPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLL 361 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + K+G LN +Q Y + I S L+ LVND+LDL ++ G +KL++S + + ++ + Sbjct: 362 QEEKIGDLNPRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIQEICHRA 421 Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 SIA K + + + + L +AD RL Q+ +L NAM F+ G LK Sbjct: 422 YHSIAEKYKGKSDKPLDFSLDIEVGLHQLLADELRLHQMLVHLLDNAMKFTQTGGKFGLK 481 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 +R F+V + G IPE+ +F +F + N Q G GLGL + + HG Sbjct: 482 VSRWEDWLAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHG 541 Query: 770 GHVS-ISSSDEG 780 G +S +S + +G Sbjct: 542 GDISFVSKAGQG 553 >gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 391 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 176/331 (53%), Gaps = 24/331 (7%) Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522 TEE R+ RN A C ++ + AI +F+ R L+ TL +++ Sbjct: 54 TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112 Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 D+V+ S L + M +T +VT +AE+ L E KAD ++F+ Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLA 172 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+E+R+PL I GF ++L ++ + +++QY E I ++ +L+ LVNDILD++ ++ Sbjct: 173 NMSHEIRTPLNAITGFAEVLGSA---TTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIE 229 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692 AG ++ +T+ +N LL++++Q ++++ +I++I++ S + DR R+ Q+ S Sbjct: 230 AGTLEFVQTTVDVNQLLSDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLS 289 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 NA+ F+ +GS + AR N + F VK+ G+ IP + VF RFV ++ Sbjct: 290 NFAGNAIKFTHEGSIRLGYEAR-NTELYFYVKDTGAGIPAEKLPDVFERFVK--LNKDKK 346 Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 G GLGLSI ++ + GG + S + EG T Sbjct: 347 GAGLGLSISQTIVAKLGGQIGADSVEGEGST 377 >gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3] Length = 769 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 111/410 (27%), Positives = 194/410 (47%), Gaps = 48/410 (11%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T Q DL + + I+++SE ++ +GR+ +SN F + L Sbjct: 374 FVEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 424 Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525 G + A S Y + D +I + D +ER++ G L + + Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDETGNLTSIRQTADGYWLKINERRTQDGGLVCVGTDI 484 Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 E +S I NAQ T V + ++L E+ E A Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 ++ K+ F+ ++S+ELR+PL I+GF++++ S G L S++ +YV I S T LL L+ Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLI 599 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ ++AG L+ I L +++E +++ + I + + KL + V D Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHANV-DC 658 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + + QIF ++SNA+ F+ G ++ ++A + N + IFS+K+ G IP++ K + F Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I+S + T + +P ++ Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 729 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 167/307 (54%), Gaps = 19/307 (6%) Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552 G +F A DD ++ +S ++EY+ P ++ ++T+ RAE Sbjct: 431 GHAIFEATFRREDDTTIPVE-----ISARMIEYNDKPT----ILVVARDITERKRAEEEL 481 Query: 553 ----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + L++ NE L+ D++K+ F+ +VS+EL++PLT+IIG+T+LL LG L +Q Sbjct: 482 RKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKH 541 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 E + ++ L LV+ +L L+ AG ++ ++ T+ +++L +++ + + + E N+ Sbjct: 542 AEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLE 601 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L DR +L +F+ I+ N++ F+ KG ++ + A +++ ++K+ G Sbjct: 602 MIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSITIFANKEDEYIHINIKDTGI 661 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 IP+DM ++F RF + ++ + + G GLGL I ++ + H G + + S +G T ++ Sbjct: 662 GIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTIVEAHEGEIWVESEGKGKGTEVH 721 Query: 786 CRIPSKE 792 ++P E Sbjct: 722 IKLPVAE 728 >gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 682 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N M ++T + E+ L ++ A+ KN+F+ +S++LR+PL IIG++DLL Sbjct: 410 NRAVMYIMRDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTPLNAIIGYSDLL 469 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 T +G LN KQ +Y I S +LLN++NDIL+++ ++AG M+L S + ++L EV Sbjct: 470 LTESVGDLNEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPSENDIQEILKEV 529 Query: 655 KQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + TK+ N I I +G + ADR +++ I ++ NA+ S K + + Sbjct: 530 NELVKTKVQISKNELIFNIENG-IEKIYADRIKIISILQNLVDNAIKHSPKNEKIFINIT 588 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771 + + VKN G I ++M K +F FV + RG GLGL+IV+ +++LH G Sbjct: 589 TKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIVKHYVHLHNGK 648 Query: 772 VSISS 776 + I S Sbjct: 649 IWIES 653 >gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 557 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 143/242 (59%), Gaps = 9/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + +LT ++T E AL E E AD K++F+ ++S+E+R+PL I+GF++LL Sbjct: 159 RMVLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + ++ +Y+E + +S +LL LVNDILDL+ ++AG ++ YS + +N LL +++Q Sbjct: 219 A---TEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQ 275 Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 K+ ++ +++I++ L S + +DR R+ Q+ S +SNA+ F+++GS I Sbjct: 276 LFHMKIGYDS-PVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC 334 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +NG F V + GS I D VF+RFV + + G GLGLSI ++ +N GG + Sbjct: 335 ENG-LRFYVTDTGSGISADKLGGVFDRFVR--LQSDKNGTGLGLSICKTIVNKLGGEIGA 391 Query: 775 SS 776 S Sbjct: 392 ES 393 >gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 632 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 2/252 (0%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + AE++L A+ K F+ +VS+ELR+PL IIGF+ +L T+K G+L Sbjct: 379 IDITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNL 438 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N K+ +YV I S LL L+N ILD++ + AG L + ++ ++K I + Sbjct: 439 NDKELKYVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLI 498 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ + I D + AD+ ++LQI +L NA+ F+ + ++ + A +F S Sbjct: 499 AKKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQVS 558 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IPE K +F+ F V ++ + G GLGL++V+ +I +HGG + + S Sbjct: 559 VKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGK 618 Query: 781 VTTINCRIPSKE 792 +T IP + Sbjct: 619 GSTFTFVIPQNQ 630 >gi|218461897|ref|ZP_03501988.1| probable two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 149 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 65/139 (46%), Positives = 94/139 (67%) Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++V IA ++ E+ + +++ + LGS VAD QRL QI K+LSNA +FS +GS++ L+ Sbjct: 1 DDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGSSISLE 60 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R+ DF+FSV++ G I DM +VF+RF + A G+R G GLGLSIV+SF++LH G Sbjct: 61 CQREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKRGGAGLGLSIVDSFVSLHHGD 120 Query: 772 VSISSSDEGVTTINCRIPS 790 V+I S TT+ CRIPS Sbjct: 121 VTIDSEPGKGTTVVCRIPS 139 >gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 398 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 142/240 (59%), Gaps = 9/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +LT ++T E AL E E AD K++F+ ++S+E+R+PL I+GF++LL + Sbjct: 2 VLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAAA- 60 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + ++ +Y+E + +S +LL LVNDILDL+ ++AG ++ YS + +N LL +++Q Sbjct: 61 --TEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLF 118 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 K+ ++ +++I++ L S + +DR R+ Q+ S +SNA+ F+++GS I +N Sbjct: 119 HMKIGYDS-PVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPCEN 177 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G F V + GS I D VF+RFV + + G GLGLSI ++ +N GG + S Sbjct: 178 G-LRFYVTDTGSGISADKLGGVFDRFVR--LQSDKNGTGLGLSICKTIVNKLGGEIGAES 234 >gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 630 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/429 (26%), Positives = 194/429 (45%), Gaps = 51/429 (11%) Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNP 461 ++S P+G FE L V +D L E ++ L +A++ + R+ L N Sbjct: 203 ISSTPQGAP--AFEGLLVPIDPSQSPQGLEGFPSLPEIVESLPISIAIWDRENRLVLCNR 260 Query: 462 AFRSLWKTEENRLSPGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFDDERKSL--- 514 FR L++ PGT I A ++ E G ++ F + + L Sbjct: 261 KFRQLYRVSAAAALPGTSYEAIQAQTQEAIAQRPPEGRG------VVGRFQLQERQLGDG 314 Query: 515 -----------QGTL-----ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE------ 552 +GTL ++ ++ + L Q M V+ + R + Sbjct: 315 TWLQIGEYWTGEGTLVSFGTDITMQKQTQHRV--LEREQQMRARVDGFEQSRRQLEIQAR 372 Query: 553 --RALTEK--NEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605 R L E E +R A++ K+ F+ +VS+ELR+PL IIGF+++++ LG + N K Sbjct: 373 QLRELAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPK 432 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 YV+ I S LL ++NDILD++ ++AG L+ ++D+ E ++ E Sbjct: 433 YESYVKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEG 492 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + + + S DR+ L Q+ +LSNA+ F+ + V L+A R G ++ + Sbjct: 493 NVELSQSGNTSI-SLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYRGSIRIAIAD 551 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP+ + F VSN +G GLGL+I S + +HGG + I S TT Sbjct: 552 TGVGIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTT 611 Query: 784 INCRIPSKE 792 + C +P ++ Sbjct: 612 VTCILPVQD 620 >gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 773 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/407 (28%), Positives = 192/407 (47%), Gaps = 50/407 (12%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q DL + + I+++SE ++ +GR+ +SN F + L PG Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQ 432 Query: 480 IRNIAATCSRYYNE----SDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLE-- 527 + A NE DG +I + D +ER++ G L + + E Sbjct: 433 RATVEAMARPAINEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDISELK 492 Query: 528 -------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEI 568 +S I NAQ T V + S++AE+ E+ E+ KA Sbjct: 493 QQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEK---ERAESANKA--- 546 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627 K+ F+ ++S+ELR+PL I+GF+D++ S G L S++ Q Y+ I S LL L+NDI Sbjct: 547 KSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDI 606 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ ++AG L+ I L +++E +++ + E NI + +L + V D + + Sbjct: 607 LDMSKIEAGRFTLDRKNIDLEPIISEAVRTLTPQAQEKNISVSTNIAPELHAEV-DGRAM 665 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 QIF ++SNA+ F+ G ++ + A + + + +K+ G IP+ K + F V N Sbjct: 666 KQIFLNLISNAVKFTPSGGSINVCAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVEN 725 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGL+I S + LH G + I S + TT+ +P K+ Sbjct: 726 QLTKTHTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITMPIKQ 772 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 132/247 (53%), Gaps = 6/247 (2%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L+ N L ++ +K+ F+ ++S+ELR+PL I+ ++ L G LN +Q Sbjct: 832 AERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPLNERQRA 891 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I S LL L+ND+LD+A ++AG M+L + ++D+ I + + IR Sbjct: 892 SIQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIR 951 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726 + + D F+AD +RL QI +LSNA+ F+ +G +V L+ D G F+V + Sbjct: 952 LHCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDT 1011 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I D +F FV ++ + G GLGL++V ++LHGG VS++S+ + Sbjct: 1012 GIGIAPDQLPRLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVF 1071 Query: 785 NCRIPSK 791 +P + Sbjct: 1072 TVTLPYQ 1078 >gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 558 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 139/241 (57%), Gaps = 3/241 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +++L N+ L + +K+ F+ +++ELR+PLT+I+ F +LL G +N +Q + + Sbjct: 308 GKKSLAVLNQKLSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPINEEQQENL 367 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S+ L+ L+NDILD+A +AG ++L+ + LND+ V++++++ ++N +R+ Sbjct: 368 MDIKTSAQQLMLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLD 427 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V S L D +RL Q+ S +++NA+ S +G V + A DN SV++NG I Sbjct: 428 V-SAVDLPLVYGDPERLRQMLSNLIANAVKHSKEGGYVHIYAKADNEFAAISVEDNGDGI 486 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P ++ +F +F +RR G GLGL++V++ L G++S++S TT I Sbjct: 487 PPELMPHIFEKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHI 546 Query: 789 P 789 P Sbjct: 547 P 547 >gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 793 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 133/236 (56%), Gaps = 3/236 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE+AL + + D +K+ F+ ++S+ELR+PL ++IGF+D+L G LN Sbjct: 532 DITERNRAEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEIKGELN 591 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ IS S LL L+NDILDL+ ++ G M+L LN +L+EV+ + + Sbjct: 592 DSQKKYISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIFSPQAA 651 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + +I ++ + K+ D+ ++ Q+ +L+NA+ F+ K + + A ++ + I S Sbjct: 652 KKDINLQFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDNIIEVS 711 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G IPE + VF+ F+ R G G+GLS+ + F+ +H G + S Sbjct: 712 VSDTGIGIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVES 767 >gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 775 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 114/430 (26%), Positives = 196/430 (45%), Gaps = 49/430 (11%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI T + R I + ++T Q L +Y + + I+ SE ++ R+ + N Sbjct: 355 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 414 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509 ++ W+ ++ L PGT + A +R E D + + + Sbjct: 415 THYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 474 Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545 ER++ G L + + L S + L + L+ N Sbjct: 475 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANA 534 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604 ERA EA A+ K+ F+ ++S+ELR+PL I+GF+++L+ G L S Sbjct: 535 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 586 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K +Y I S LLN++NDILD++ ++AG M++ I L L+ E + Sbjct: 587 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAER 646 Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 NIR ++ IS G + ADR+ + Q+ +LSNA+ F+++G + L+A + G ++ Sbjct: 647 KNIRVVQQISSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 704 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G IP+ + + F V + + + G GLGL+I S LHGG + I S++ Sbjct: 705 ADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVG 764 Query: 782 TTINCRIPSK 791 T I+ RIP + Sbjct: 765 TIISVRIPDR 774 >gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] Length = 772 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 114/430 (26%), Positives = 196/430 (45%), Gaps = 49/430 (11%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI T + R I + ++T Q L +Y + + I+ SE ++ R+ + N Sbjct: 352 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 411 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509 ++ W+ ++ L PGT + A +R E D + + + Sbjct: 412 THYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 471 Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545 ER++ G L + + L S + L + L+ N Sbjct: 472 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANA 531 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604 ERA EA A+ K+ F+ ++S+ELR+PL I+GF+++L+ G L S Sbjct: 532 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 583 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K +Y I S LLN++NDILD++ ++AG M++ I L L+ E + Sbjct: 584 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAER 643 Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 NIR ++ IS G + ADR+ + Q+ +LSNA+ F+++G + L+A + G ++ Sbjct: 644 KNIRVVQQISSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 701 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G IP+ + + F V + + + G GLGL+I S LHGG + I S++ Sbjct: 702 ADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVG 761 Query: 782 TTINCRIPSK 791 T I+ RIP + Sbjct: 762 TIISVRIPDR 771 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 135/246 (54%), Gaps = 5/246 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + AL K L A K+ F+ ++S+ELR+PL +++ LL +K G+L KQ +Y Sbjct: 420 KTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTDKQIEY 479 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ LL L+NDILDL+ V+AG ++++ + I L +LL ++Q + + Sbjct: 480 AKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQQELNF 539 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 ++ I++ L + D QRL QI + +LSNA F+ +G+ + L + DFI FSV + G Sbjct: 540 QITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQGN-IKLIVQKSEADFISFSVSDTG 598 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP++ +F F QRR G GLGLSI F L GG +++ S + +T Sbjct: 599 IGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGKGSTFT 658 Query: 786 CRIPSK 791 +P K Sbjct: 659 FSLPEK 664 >gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] Length = 769 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 193/410 (47%), Gaps = 48/410 (11%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T Q DL + + I+++SE ++ GR+ +SN F + L Sbjct: 374 FAEQTAQADLRIR---------DAIENISESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQ 424 Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525 G + A S Y + D +I + D +ER++ G L + + Sbjct: 425 SGIERATVEAMSRPAISEYPLKVDEAGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDI 484 Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 E +S I NAQ T V + ++L E+ E A Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKEKAESA 539 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 ++ K+ F+ ++S+ELR+PL I+GF++++ S G L S++ +Y+ I S T LL L+ Sbjct: 540 NKAKSEFLANMSHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ ++AG L+ I L +++E +++ + I + + KL + V D Sbjct: 600 NDILDMSKIEAGRFTLDCKNINLEPIISETIRTLTPQAQAKKISLTTNIEPKLHADV-DC 658 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + + QIF ++SNA+ F+ G ++ ++A + N + IFS+K+ G IP++ K + F Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQ 718 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I+S + T + +P ++ Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTITMPIQQ 768 >gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 419 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/325 (28%), Positives = 171/325 (52%), Gaps = 27/325 (8%) Query: 470 EENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSV 525 EE R+ H RN +A C ++ + + +I +F ++R K L +++LLS+ Sbjct: 79 EEKRVGDLLHCRNAIVAGECGKH-EQCKLCCIRTSISKAFYEKRSFKKLDASMQLLSED- 136 Query: 526 LEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 E ++IP + +LT +VT+ +R L + E AD++K++F+ Sbjct: 137 -EKTVIPCDVSVSGTYLKINGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFI 195 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 ++S+E+R+PL IIGF+ L+ T+ + ++ Y + IS ++ LL LVNDI DL+ + Sbjct: 196 ANMSHEVRTPLNAIIGFSGLMATA---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQI 252 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIF 691 DAG++ YS NDLL E++ +++EN + + ++ + L + +++QR++Q+ Sbjct: 253 DAGVLNFVYSEFDANDLLRELEGLFGMRLNENPL-VTLVCEAHLEPIMMHSEKQRIIQVL 311 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 + +L NAM F+ G + F V + G IP++ + +F+RF Q Sbjct: 312 TNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ- 370 Query: 752 RGVGLGLSIVESFINLHGGHVSISS 776 G GLGL++ ++ ++ GG + S Sbjct: 371 -GTGLGLTLSQTIVHNLGGRFGVES 394 >gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 702 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 2/248 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +AE AL A A+ K+ F+ ++S+EL++PL +IIGF+DLL G LN Sbjct: 434 DITARKKAEEALINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPLN 493 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQS+Y +IS++ LLN++N IL+L+ V++ +L +N+ +N+ + ++ Sbjct: 494 EKQSRYAGFISSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQIL 553 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + NI++ SD AD + QI +L+NA+ F+ + + + + ++ G V Sbjct: 554 KKNIKLNYNSDSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDISSKQEGGIVTIKV 613 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G IPED +F F+ R G GLGL++ + ++ +HGG++S+ S Sbjct: 614 KDTGIGIPEDSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKG 673 Query: 782 TTINCRIP 789 ++ +P Sbjct: 674 SSFKVELP 681 >gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C] Length = 769 Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 109/410 (26%), Positives = 194/410 (47%), Gaps = 48/410 (11%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T + DL + + I+++SE ++ +GR+ +SN F + L Sbjct: 374 FAEQTARADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYASIPKQMLQ 424 Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525 G + A S Y + D +I + D +ER++ G L + + Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDESGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDI 484 Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 E +S I NAQ T V + ++L E+ E A Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 ++ K+ F+ ++S+ELR+PL I+GF++++ S G L S++ +Y+ I S T LL L+ Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ ++AG L+ I L +++E +++ + I + + KL + V D Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHADV-DC 658 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + + QIF ++SNA+ F+ G ++ ++A + N + IFS+K+ G IP++ K + F Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I+S + T + +P ++ Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|239997233|ref|ZP_04717757.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii ATCC 27126] Length = 927 Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 142/249 (57%), Gaps = 5/249 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F+ S++A +L ++ L + D+ K+ F+ +S+ELRSPL +I+G+TDL +G+ Sbjct: 527 FIPYALSLKA--SLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDL-ALMDVGN 583 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ + + + I +++ L+NDILDL+ + +G MKL+ ++ + ++EV +S Sbjct: 584 VD-RMTDALGVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIAGSISEVAKSFEAG 642 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 NI++ + + + D R+ Q+ + +LSNA+ F+SKG TV ++ R++ +++F Sbjct: 643 FASKNIQLSINCEDDHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNYLF 702 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+NG + + VF RF + + G+GLGLSIV+S + +HGG + S Sbjct: 703 RVKDNGKGMTREQLSHVFERFYQGKNEHNKHGLGLGLSIVKSLVEMHGGEIYAESDGPNT 762 Query: 782 -TTINCRIP 789 TT +P Sbjct: 763 GTTFYVTLP 771 >gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 840 Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 20/304 (6%) Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTF 542 ++Y ES G L +D+R+S Q D V ++ PL + ++ Sbjct: 265 AKYSQESSGNCLID------NDDRESRQICE---PDKVWQFIKCPLTTDKLEAPISIFVA 315 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +VT + + L KN L + + +K+ F+ +S+EL+SPLT ++G + LL+ K+G+L Sbjct: 316 TDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNL 375 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 NS+Q Y + I S L+ LVND+LDL ++ G +KL+++ + + ++ SI K Sbjct: 376 NSRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKY 435 Query: 663 H---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E + + + +L +AD RL Q+ +L NAM F+ G + LK +R + Sbjct: 436 QSKTEKPVDFSLEIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSDWL 495 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISS 776 F+V + G IPE+ +F +F + N Q G GLGL + + HGG +S +S Sbjct: 496 AFNVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSK 555 Query: 777 SDEG 780 + +G Sbjct: 556 AGQG 559 >gi|332142950|ref|YP_004428688.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143005|ref|YP_004428743.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552972|gb|AEA99690.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553027|gb|AEA99745.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 908 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 141/251 (56%), Gaps = 9/251 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKL 599 F+ S++A +L ++ L + D+ K+ F+ +S+ELRSPL +I+G+TDL + S + Sbjct: 507 FIPYALSLKA--SLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDLALMDVSNV 564 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + + + I +++ L+NDILDL+ + +G MKL+ ++ + ++EV +S Sbjct: 565 ----DRMTDALGVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIASSISEVAKSFE 620 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 NI++ + + + + D R+ Q+ + +LSNA+ F+SKG TV ++ R++ ++ Sbjct: 621 AGFASKNIQLSISCEDEHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNY 680 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 VK+NG + ++ VF RF + G+GLGLSIV+S + +HGG + + S Sbjct: 681 TLRVKDNGKGMTQEQVAHVFERFYQGKDSHNKHGLGLGLSIVKSLVEMHGGEIQVHSDGP 740 Query: 780 GV-TTINCRIP 789 T+ N +P Sbjct: 741 NTGTSFNITLP 751 >gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571] gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571] Length = 763 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 136/243 (55%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AE+ EK A A+ K+ F+ ++S+ELR+PL IIGF++++++ G L S K +Y Sbjct: 514 AEKYSEEKTRA-EDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSDKYREY 572 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL+++NDILD++ ++AG M+L I L++++ + + A K E + + Sbjct: 573 CSDIKGSGTYLLDVINDILDMSKIEAGRMQLELEDIRLDEIIADAMRVTAVKGDEKQLDM 632 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + G++ DR+ L QI +LSNA+ F+ +G V ++A + G + ++++ G Sbjct: 633 TAQVGAGQV--MRGDRRALKQILLNLLSNAVKFTPEGGHVAVRAKVNGGAAVIAIEDTGI 690 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + F V + +G GLGL+I +S LHGG + I S++ TT+ Sbjct: 691 GIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIAKSLAELHGGSMRIRSTEGAGTTVVV 750 Query: 787 RIP 789 R+P Sbjct: 751 RLP 753 >gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] Length = 391 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 167/297 (56%), Gaps = 24/297 (8%) Query: 502 AIITSFDDER--KSLQGTLELLS--------DSVLEYSIIPLPNAQTM-LTFVNVTDSVR 550 AI +F+ R +L+ TL +++ ++V+ S L + M LT ++T + Sbjct: 89 AIRQAFEQRRGFTNLEATLNMVTSENQTVACEAVISGSYFLLNEEENMVLTVHDITHLKQ 148 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQ 608 ER L E AD K++F+ ++S+E+R+PL I GF +++ GS N+++ +Q Sbjct: 149 VERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFAEVM-----GSANTEEEKTQ 203 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E I ++ +L+ LVNDILD++ ++AG ++ YST+ +N LL+++++ ++++ + Sbjct: 204 YQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLLSDLQRLFQMRINDAGGK 263 Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +++I++ L S + DR R+ Q+ S + NA+ F+ +G+ I A+D + F VK+ Sbjct: 264 VQIIAEPSLSSCLIQTDRNRVAQVISNFVGNAIKFTREGNIRIGYEAKDT-ELYFYVKDT 322 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 G+ IP + +VF RFV ++G GLGLSI ++ + G + S EG T Sbjct: 323 GTGIPAEKLSNVFGRFVK--LNKDQKGAGLGLSISQTIVGKLSGQIGADSIEGEGST 377 >gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 795 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 7/237 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYIS 614 TE+ EA +A K+ F+ ++S+ELR+PL IIGF+++L+ G L S K +Y + I Sbjct: 537 TERAEAASRA---KSEFLANMSHELRTPLNAIIGFSEVLQARMFGPLGSDKYGEYADDIH 593 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD+A ++AG M+L + L LL E + +A + + +IR+ Sbjct: 594 NSGIHLLTVINDILDMAKIEAGQMQLEREDVDLAPLLKETLRLVAIQAEQKDIRVDQRIS 653 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 KL S ADR+ + QI +LSNA+ F+ G ++++A + + ++++ G IP+ + Sbjct: 654 AKL-SLNADRRAMKQILLNLLSNAVKFTEPGGKILVRARKTSCAVTLTIEDTGIGIPKAL 712 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F V N G GLGL+I S LHGG + + S + T ++ R+P Sbjct: 713 LNRIGQPFEQVQNQFSKSTGGSGLGLAISRSLAELHGGAMKVRSIEGMGTIVSVRVP 769 >gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 975 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 14/280 (5%) Query: 524 SVLEYSII--PLPNAQTMLTFVN-------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574 +VLE+ P P+ + N V + RAE +L + EA A K+SF+ Sbjct: 423 AVLEFFACDAPPPDPALLRVMTNIGAQLGRVIERKRAEESLRQAKEAAEDASRAKSSFLA 482 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+ELR+PL IIGFT L+ +L +KQ + +E I ASS LL+L+N ILDLA V+ Sbjct: 483 NMSHELRTPLNAIIGFTRLVMRRAKEALPTKQFENLEKILASSEHLLSLINSILDLAKVE 542 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AG M++ S L +L+ +++ + +R+ + D ++L QI + Sbjct: 543 AGRMEVKASEFALEPVLDLCLRTVEPLIKSEGVRLVRDVEDPPTMLRTDEEKLRQILINL 602 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 LSNA+ F+ GS + R G+ + F+V + G IP++ ++F+ F V N+ Sbjct: 603 LSNAIKFTEAGSVTL--RVRSAGEHVEFAVTDTGIGIPQEALSAIFDEFHQVDNSATRSH 660 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G GLGL+I L GGH+ + S +T IP + Sbjct: 661 SGTGLGLAISHRLARLLGGHIDVESRVGQGSTFTLSIPPR 700 >gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 1038 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 133/245 (54%), Gaps = 5/245 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L V + RA+ AL K L +A K+ F+ ++S+ELR+PL +++ LL Sbjct: 333 QTQLLEVQRDELSRAQGALQAKARDLEEASRYKSEFLANMSHELRTPLNSLLIMARLLAD 392 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ G+L S Q ++ E I + LLNL+NDILD++ ++AG ++L + + +L +++ Sbjct: 393 NREGNLTSDQVKFAETIETAGNDLLNLINDILDISKIEAGHIELQIERVRVEPMLEKLRA 452 Query: 657 SIATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + + E N RI+ + G +D QR+ Q+ LSNA+ F+ KG V+ A Sbjct: 453 TFQSSASEKGLNFRIETVP-GTPDRIESDPQRIEQVLKNFLSNAIKFTEKGEVVLSVAEE 511 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 ++G F+V++ G IPED +++F F R+ G GLGLSI + GG + Sbjct: 512 EDGRIAFAVRDTGIGIPEDQQQAIFEAFRQADGSINRKYGGTGLGLSISSELTRVLGGEI 571 Query: 773 SISSS 777 + S+ Sbjct: 572 RVEST 576 >gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 814 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 192/391 (49%), Gaps = 48/391 (12%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA---------TCS 488 E ID++SE ++ R+ L N ++ L+ + + G +++AA + Sbjct: 404 EAIDNISEAFVLWDAKERMVLCNGKYQQLFNLPSSAIRHGVTKQDVAAIRKAPVMRSQVN 463 Query: 489 RYYNESDGWDLFAAIITSFDD-------ERKSLQGTL--------------ELLSDSVLE 527 N+ + F A DD ER +L G L DS E Sbjct: 464 TDRNQKHHSNTFEA---QLDDGRWFQISERPTLDGGAVSVGTDITQIKRNQSKLEDSERE 520 Query: 528 Y--SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELR 581 + +I+ L Q ++ F N D +R L +E ++ADE K+ F+ ++S+ELR Sbjct: 521 HLATIVELRKMQQNLVAFANEADD---QRLLA--DEQRKQADEANKSKSQFLANMSHELR 575 Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL IIGF+D+++ G L N K ++Y I +S LL ++ND+LD++ ++AG M++ Sbjct: 576 TPLNAIIGFSDIMREGMFGPLGNEKYTEYANDIRSSGGFLLGVINDVLDMSKIEAGRMQI 635 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + ++DLL E + IA + + +++ + L +ADR+ + Q+ +LSNA+ Sbjct: 636 YPEELAVSDLLQETLRIIAAQADDGELQVTTEIETGL-DIIADRRAVKQVLINLLSNAVK 694 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 F+ KG ++ + A R + + + ++G I +D + + F A R G GLGL Sbjct: 695 FTPKGGSIQVSARRLDDNVEMEILDSGIGISQDALERIGLPFEQAASELTRDHVGSGLGL 754 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +I +S LHGG V ISS + TT+ R+P Sbjct: 755 AIAKSLAELHGGSVDISSIEGIGTTVLVRLP 785 >gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 775 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 144/268 (53%), Gaps = 14/268 (5%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 L S I L + L+ N ERA EA A+ K+ F+ ++S+ELR+PL Sbjct: 515 LSASRITLERQKAELSVANANYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLN 566 Query: 586 NIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+GF+++L+ G L S K +Y I S LLN++NDILD++ ++AG M++ Sbjct: 567 AILGFSEILQNQMFGPLGSEKYDEYSRDIHESGKHLLNVINDILDMSKIEAGHMRITRER 626 Query: 645 IVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 I L L+ E + + NIR ++ IS G + ADR+ + Q+ +LSNA+ F++ Sbjct: 627 IDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL--TMFADRRAMKQVLLNLLSNAVKFTN 684 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 +G + L+A + G ++ ++G IP + + + F V + + + G GLGL+I Sbjct: 685 EGGRISLRARKVRGAVTLTIADSGIGIPRYALQKIGHPFEQVQSQYAKSKGGSGLGLAIS 744 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789 S LHGG + I S+++ T I+ RIP Sbjct: 745 RSLTRLHGGRMKIHSAEKVGTIISVRIP 772 >gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1159 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +RA+ AL++K L +A + K+ F+ ++S+ELR+PL + + LL +K G+L +Q + Sbjct: 454 LRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTEEQVR 513 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E I + LLNL+NDILDLA ++AG + + + + + + + E N+ Sbjct: 514 YAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSIVEPLRPLAREKNLA 573 Query: 669 I-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 V+ G D QRL QI +LSNA+ F+ +G + AA+ +G FSV++ G Sbjct: 574 FSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAAQPDGRVAFSVRDTG 633 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IPE K +F F R+ G GLGLSI L GG VS+ S+ Sbjct: 634 IGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQST 685 >gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 732 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 144/250 (57%), Gaps = 5/250 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ AE+A+ E A++ K+ F+ ++S+ELR+PL +IIGF+D+L G L Sbjct: 480 LDITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEAFGKL 539 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N KQ +Y I+ S LL+++NDILDL+ ++AG M+LN L ++++E+K ++ + Sbjct: 540 NEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLV 599 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + + + + + + AD+ ++ Q+ +LSNA+ F+ + + + + S Sbjct: 600 KKKQLILDLDTSLEYPVY-ADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDCGEEEITIS 658 Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V ++G IP + +F F S+++R Q +G GLGL++V++ I +HGG + + S Sbjct: 659 VSDSGIGIPPEEQDKLFQPFRQIDSDSNR-QYQGTGLGLALVKNIIEMHGGQIWVESEAG 717 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 718 KGSTFKFTLP 727 >gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 1046 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 138/258 (53%), Gaps = 10/258 (3%) Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 IP+ N +T + ++T R+E L + +A+ K+ F+ +VS+ELR+PL Sbjct: 461 IPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLN 520 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IIGF+D+L G LN KQ +YV IS S LL L+NDILDL+ V+AG M+L+YS Sbjct: 521 SIIGFSDILIEKVFGELNEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEF 580 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 ++ + EVK + + + + + + ADR RL+QI ++SNA+ F+ G Sbjct: 581 SIDPVFEEVKAVLFPLIQAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNG 640 Query: 706 STVILKAARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVE 762 V + + SV + G I ED K F + ++ R Q G GLGL++V+ Sbjct: 641 GKVSVYCKESGNRALISVIDTGIGISAEDQVKLFQPFTQLDASTSR-QYCGTGLGLALVK 699 Query: 763 SFINLHGGHVSISSSDEG 780 +NLH G + + SD G Sbjct: 700 KIVNLHQGDIWV-ESDPG 716 >gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1034 Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 142/248 (57%), Gaps = 17/248 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFT 591 +++TD +AE+ L +A+ +A+E+ K+ F+ ++S+ELR+PL ++IGF+ Sbjct: 778 LMDITDVKKAEKQL---EDAVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFS 834 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 D+L G LN Q +Y+ IS LL+L+NDILDL+ ++AG M+L + L+ + Sbjct: 835 DILLKEIKGELNDSQKKYISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVF 894 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +E++ I+ + + +I +++ + AD+ ++ QI +LSNA+ F+ + V + Sbjct: 895 SEIESVISPQAQKKSIDLEISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMS 953 Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 A + D + +VK+ G IPED +F+ F+ R+ G GLGL +V+ ++ +H Sbjct: 954 AGEVDRDQVEITVKDTGIGIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMH 1013 Query: 769 GGHVSISS 776 GG + + S Sbjct: 1014 GGEILVES 1021 >gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 375 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 142/240 (59%), Gaps = 8/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T ++T + E L + E AD K+ F+ ++S+E+R+PL I+GF++LL ++ Sbjct: 126 VITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S +++Q++ + ++ +L L+ DILDL+ ++AG ++ +S I +N L+++++Q Sbjct: 185 --SSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDINQLMSDLEQQF 242 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ E ++VI + V DR RL Q+ + ++NAM F+ +GS + ++ Sbjct: 243 RMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDEGSITLGYRTNED 302 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G F F VK+ GS IP++ ++F+RFV +++G GLGLSI ++ ++ GG + + S Sbjct: 303 G-FYFYVKDTGSGIPKEKLPTIFDRFVKLEQ--EKKGTGLGLSICQTIVSKLGGKIGVDS 359 >gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 725 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 8/259 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T+ + +++T+ ++E + + ++ K+ F+ ++S+ELR+PL +IGF D+L Sbjct: 465 TIESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEE 524 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G LN KQ ++V IS S LL L+N+ILDL+ ++AG M+ + + + +E+K Sbjct: 525 GFGPLNKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDI 584 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + IRI+ I DG + + +D + +Q+ ++SNA+ F+ +G V + +AR N Sbjct: 585 LFPVFSKKKIRIEFEIGDG-ITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKV-SARKN 642 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV 772 GD + SVK+ G I E+ +F+ FV S + R Q G GLGL++V+ + L GG + Sbjct: 643 GDMLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTR-QYEGTGLGLALVDQMVQLMGGEI 701 Query: 773 SISSSDEGVTTINCRIPSK 791 + S + C IP K Sbjct: 702 CVFSQPGIGSEFICMIPLK 720 >gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] Length = 729 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 4/242 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL E A+ A IKN F+ +S+ELR+PLT +IG + L LG L +KQ +Y+E Sbjct: 344 QALREALSAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLLRWPLGPLTAKQREYLEI 403 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIK 670 I S T LL L+N ILDL+ + G +L+ S + L + + + + H + N+R + Sbjct: 404 IHESGTHLLELINSILDLSEAELGRSQLHRSAFSIRQLCADCLEVVKPQAHRHQVNLRHQ 463 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 ++ F D +R+ QI +LSNA+ F+ VIL+A + IF V++ G I Sbjct: 464 LMIPPTRDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRAWWKEDELIFQVQDTGIGI 523 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + +F +F + ++ G GLGL++ + +++LH G + + S++ +T + Sbjct: 524 PAHLQSLLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHHGWIDVDSTEGKGSTFTVGL 583 Query: 789 PS 790 P+ Sbjct: 584 PA 585 >gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 774 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611 R + E A+ K+ F+ ++S+ELR+PL IIGF++L++ G L S++ Q YV Sbjct: 527 RKYMRETERAESANRAKSEFLANMSHELRTPLNAIIGFSELMQQGLFGPLGSERYQEYVN 586 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S T LL ++NDILD++ ++AG ++ +I L++++ E + + + + NI + Sbjct: 587 DIYSSGTYLLGVINDILDMSKIEAGQFSIHRESIDLSEVIRETMRVVTLQAGKKNIELTS 646 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 L S ADR+ + QI +L NA+ F+ +G V L+A + + ++K+ G IP Sbjct: 647 DVPASL-SLHADRRAVKQILINLLFNAVKFTGQGGRVTLRARVVSNSLMLTIKDTGCGIP 705 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRI 788 + K + F V N + G GLGL+I S LHGG + I S+ EGV TI + R+ Sbjct: 706 REALKKLGRPFEQVENQYSRSHNGSGLGLAISRSLTELHGGALRIRST-EGVGTIVSIRL 764 Query: 789 P 789 P Sbjct: 765 P 765 >gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 701 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/389 (28%), Positives = 193/389 (49%), Gaps = 47/389 (12%) Query: 427 TKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN- 482 T Y+ L++ + +T+ L G+A+ +GRI +NPA+ LW+ E+ ++ Sbjct: 325 TSYSELLEARMQLQQTLASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWD 384 Query: 483 -IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSV--LEYSIIPLPNA 536 + R + + D FA D+ TLEL LS+ + L+ P+ +A Sbjct: 385 ILPLLLKRLSHPLELTDFFAECQAQPDE-------TLELALRLSEPLQDLKLRSTPVKDA 437 Query: 537 QTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 Q +T V + D R R+ D++KN FV VS+ELR+PLT+I+G+T+LL Sbjct: 438 QHQITGRLVVIEDVTRE-----------REIDKMKNEFVSVVSHELRTPLTSILGYTELL 486 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + ++ ++V+ + + L +V+D+L+L+ +DAG +KLN + L+ ++ E+ Sbjct: 487 LAREFKPV--ERQEFVQTVYDQANQLSKMVDDLLNLSRLDAGQIKLNRWVVSLHQIIREI 544 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---- 710 + + + E + + I +G + AD+ ++ QI + +LSNA+ +S G V L Sbjct: 545 TKQLNETLSEKHRLLIDIPEG-IPPIFADKDKVRQILTNLLSNAIKYSPNGGQVALIVRE 603 Query: 711 --------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 + I +V++ G I E+ +F RF V N+ + G GLGLSI Sbjct: 604 LRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSI 663 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ I LHGG + +S+ TT +P Sbjct: 664 TKALIELHGGRIWATSTLGRGTTFWVTLP 692 >gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC BAA-1498] Length = 769 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/410 (26%), Positives = 194/410 (47%), Gaps = 48/410 (11%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 F T Q DL + + I+++SE ++ +GR+ +SN F + L Sbjct: 374 FAEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 424 Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525 G + A S Y + D +I + + +ER++ G L + + Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDESGNLTSIRQTANGYWLKINERRTQDGGLVCVGTDI 484 Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 E +S I NAQ T V + ++L E+ E A Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 ++ K+ F+ ++S+ELR+PL I+GF++++ S G L S++ +Y+ I S T LL L+ Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ ++AG L+ I L +++E +++ + I + + KL + V D Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHADV-DC 658 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + + QIF ++SNA+ F+ G ++ ++A + N + IFS+K+ G IP++ K + F Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V N G GLGL+I S + LH G + I+S + T + +P ++ Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEGKGTIVTIIMPIQQ 768 >gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 783 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 6/244 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R ++ E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 529 RKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 588 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI + Sbjct: 589 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRMISLQADEKNIAVNT 648 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 649 RIEDAM--QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGI 706 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ K + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 707 PKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCI 766 Query: 789 PSKE 792 P ++ Sbjct: 767 PDRK 770 >gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 806 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 24/272 (8%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ +AE L N+ L KA ++K+ F+ ++S+ELR+PL +I+G + L+ G Sbjct: 390 TIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYG 449 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQ 656 LN KQ Q +E + S LL+L+NDILDL+ ++AG M L+ + ++ L+N V+Q Sbjct: 450 PLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQ 509 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712 K + N+ ++I + L + D++RL Q+ +L+NA+ F+ +G V+++A Sbjct: 510 FAIQK--QINLSSEIIPN--LPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIK 565 Query: 713 ------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 ++ F+V + G I D ++F FV RR G GLGLS+V+ Sbjct: 566 EQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKI 625 Query: 765 INLHGGHVSISSS-DEGV---TTINCRIPSKE 792 + LHGG V+++S +EG TI C K+ Sbjct: 626 VELHGGSVTVTSKLNEGSRFKITIPCVFQDKD 657 >gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855] Length = 1045 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 11/237 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ K+ A +++ +K++F+ ++S+E+R+PL IIGF+++L T++ ++ +Y+ I Sbjct: 673 LSAKDRA-EESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYINIIE 728 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +++T+LL L++DILDL+ ++AG + +YS + LND+L+E++ + + I++I+ Sbjct: 729 SNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVV--RYRTETCGIQLIAH 786 Query: 675 GKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L S ++ RL+Q+ + +L+NA F+S+GS + + F VK+ G IP Sbjct: 787 KGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCGRELYFYVKDTGCGIPA 845 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D S+F RFV Q G GLGLSI ++ + GGH+ + S +E +T IP Sbjct: 846 DKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGHIGVESEEEKGSTFWFTIP 900 >gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 784 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 4/243 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R ++ E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 529 RKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 588 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI + Sbjct: 589 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMISLQADEKNIAVNT 648 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G IP Sbjct: 649 RIEEAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGIP 707 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + K + F V N G GLGL+I S LHGG + I S++ T ++ IP Sbjct: 708 KSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767 Query: 790 SKE 792 ++ Sbjct: 768 DRK 770 >gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 726 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/404 (26%), Positives = 194/404 (48%), Gaps = 70/404 (17%) Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 ++ Q ET Y+ G+ L G+A+ +GR+ +NPA+ +W+ + P Sbjct: 347 MSYQAAYETSYHL-----GQVFSSLPIGLALLDLNGRVIRANPAWNQVWRLDAQPQRPSF 401 Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLEL---LSDSV 525 ++ G DL ++ +D +++ T E L + Sbjct: 402 YV---------------GIDLVEHLLARLNDPFRLSEFCDLGQRTPDQTFETSLQLRNPY 446 Query: 526 LEYSIIPLP--NAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 E ++ +P ++Q LT V+D R R++D +K+ F+ VS+ELR Sbjct: 447 QELHVLSVPTRDSQQQLTGRLWVVSDRTRE-----------RESDRLKDEFIGIVSHELR 495 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT+I+G+T++L + S Q ++++ +S + L +V D+LD++ ++AG++KLN Sbjct: 496 TPLTSILGYTEILLNRQDLDYES-QREFLQTVSNEAERLFKMVKDLLDVSRLEAGVVKLN 554 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAM 699 + L ++ E + ++H I K++ D + L ADR ++ QI +LSNA+ Sbjct: 555 RWAVGLWQVIEE----LTLQLHTQLIHHKLLIDARTPLPPVFADRDKVKQIIFNLLSNAI 610 Query: 700 DFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSI-PEDMCKSVFNRF--VSN 745 +S +GS + L R N D + V++ G I PED + +F RF V N Sbjct: 611 KYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDEGIGIKPEDQAR-LFERFQRVDN 669 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ Q+ GVGLGL I + LHGG + + S + ++ + +P Sbjct: 670 SNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSFSFTLP 713 >gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1447 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 138/249 (55%), Gaps = 5/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +E L EK A A+ KN F+ ++S+ELR+PL +IIGF+D+L G LN Sbjct: 1189 DITEKKISENLLHEKQMA-EIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELN 1247 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + + IS+S LLNL+N ILDL+ ++A M+LNY L L ++ + Sbjct: 1248 RKQLRAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVAD 1307 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + NI I++ D +L AD ++ +I ++ NA+ FS + S V + AR NG+ + + Sbjct: 1308 KKNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKI-GARKNGNLVEIT 1366 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I + +F F V++ + +G GLGLS+V+ +NLHGG+V S Sbjct: 1367 VTDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGE 1426 Query: 781 VTTINCRIP 789 +T IP Sbjct: 1427 GSTFAFAIP 1435 >gi|254416897|ref|ZP_05030645.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176261|gb|EDX71277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1138 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 132/257 (51%), Gaps = 12/257 (4%) Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 PN+Q L + T + + LT KN L + + +K+ F+ ++S+EL++PLT ++G + Sbjct: 432 PNSQLWLVMAQDATTQQQVAQELTAKNADLVQLNRLKDEFLAYISHELKTPLTAVLGLST 491 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LLK LG LN +Q++Y I + L+ +VNDILDL ++ G ++L + + L + Sbjct: 492 LLKDQLLGELNERQARYARLIYQNGRQLMAVVNDILDLTRMETGQLELTLEPVQIQSLCD 551 Query: 653 EVKQSIATKMHENN---------IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 Q +NN I + + L + +AD RL Q+ + +LSNA+ F+ Sbjct: 552 RAYQQALQVYSDNNPNHEGATPDISFVLDIEPGLDTIIADELRLRQMLAHLLSNALKFTD 611 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 +TV LK +G F++ + G IPED +F +F + Q G GLGL + Sbjct: 612 SQNTVGLKVNNQDGWIAFTIWDTGIGIPEDKQHLIFQKFQQLEEPLTRQFEGTGLGLVLT 671 Query: 762 ESFINLHGGHVSISSSD 778 + LHGG +S S + Sbjct: 672 QRLARLHGGDISFISKN 688 >gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 773 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 140/242 (57%), Gaps = 11/242 (4%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614 TE+ EA +A K+ F+ ++S+ELR+PL IIGF++L++ G L S++ +Y I+ Sbjct: 529 TERAEAANRA---KSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEYATDIN 585 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL ++NDILD++ ++AG L+ I L L++E + ++ + + I ++ I+ Sbjct: 586 SSGKYLLGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISVETRIA 645 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 D + VADR+ + QI +LSNA+ F+ G + ++A +G + ++++NG IP++ Sbjct: 646 DAL--TLVADRRAIKQIVINLLSNAVKFTGHGGHISVRARNTSGALVLTIEDNGCGIPKE 703 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPS 790 + F V N G GLGL+I S L GG + I SS EGV TI + RIP Sbjct: 704 ALGKLGRPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSS-EGVGTIVSVRIPV 762 Query: 791 KE 792 K+ Sbjct: 763 KK 764 >gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942] gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 754 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+ELR+PLT +IG + L G L +Q +Y++ I S LL L+NDIL Sbjct: 384 KGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLTERQREYIKAIHDSGEHLLELINDIL 443 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDGKLGSFVADRQR 686 DL+ ++AG L L+ L + ++ K + E + + + + ++ F AD +R Sbjct: 444 DLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPKR 503 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 L QI +LSNA+ F+ TV L+ R+ IF V + G IPE +F +F + Sbjct: 504 LRQILINLLSNAVKFTEPQGTVFLRVWREGDRAIFQVSDTGIGIPESEQAQLFQKFQQLD 563 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + R Q G GLGL++ + + LHGGH+ I S+ +T IP + Sbjct: 564 TSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIPEQ 610 >gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] Length = 769 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 514 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 573 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 574 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 633 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 634 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 691 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 692 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 751 Query: 789 PSK 791 P + Sbjct: 752 PDR 754 >gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 663 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 177/364 (48%), Gaps = 23/364 (6%) Query: 440 IDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAA--TCSRYY 491 ID++ +GVAVF D I L+ A R L + ++PGT + +AA T ++ Sbjct: 295 IDNMPQGVAVFASDDALIALNESAIRML-GLPKAEITPGTIDISLFMALLAANDTPPGHH 353 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSV 549 + DL +I R+ + E + S ++E +P +L+F ++TD Sbjct: 354 SAQLTADLSESI-------RERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDITDRK 406 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608 E+ L E + + + KN+F+ ++S+ELR+PL IIGF++++K G L + Sbjct: 407 HIEQTLREAKDEAERGNRTKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRA 466 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YV+ I S LL L+NDILD++ +AG+ L + + + DL+ + + + I Sbjct: 467 YVDDIHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAIS 526 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + L + +AD +RL QI + SNA+ F+ G V + A F+ V + G Sbjct: 527 LTEDLPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFVIRVADTGI 586 Query: 729 SI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + PED+ + V FV R R+ G GLGL + ++ + HGG +++ S T + Sbjct: 587 GMTPEDVQR-VMEPFVQADTRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVT 645 Query: 786 CRIP 789 P Sbjct: 646 VTFP 649 >gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 767 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 133/502 (26%), Positives = 227/502 (45%), Gaps = 52/502 (10%) Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQ----------LNWKTWK-EN 377 F NR F W + + P +D+ L F +A + P+ N + + + Sbjct: 273 FENREF--FWSRSMYDMLGLPGSDKTLGFGEAARLMHPDDGGLYEIARAIANGHSGQVDQ 330 Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 IF + + + W Q VI +++ R I + ++T Q L +Y + Sbjct: 331 IFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLA 385 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYN 492 + I+ SE ++ + R+ + N F+ + ++ L PGT I N AA R Sbjct: 386 DAIECTSEAFVLWDKNDRLVMCNTHFQEAYGLPDSVLVPGTERSIVNAAAARPVIERRVA 445 Query: 493 ESDGWDLFAAIITSFD-----DERKSLQGT-------LELL---------SDSVLEYSII 531 ++DG + + + +ER++ G + L+ S+ L +I Sbjct: 446 DADGSGRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIG 505 Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 L ++ L S EK A A++ K+ F+ ++S+ELR+PL I+GF+ Sbjct: 506 DLSASRQTLELQKAELSTANANYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFS 564 Query: 592 DLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 ++L+ G L S K +Y I S LLN++NDILD++ ++AG +KL+ I L L Sbjct: 565 EILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLKLHRERIDLVPL 624 Query: 651 LNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + E + A E NI I + IS G + ADR+ + Q+ +LSNA+ F+ G + Sbjct: 625 IEESLRFTAIPAAEKNIVIEQRISSGL--TLTADRRAMKQVLLNLLSNAVKFTDDGGRIA 682 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 ++ R +G ++ + G IP + F V + + + G GLGL+I S +L Sbjct: 683 VRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSL 742 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG + I S + T I+ RIP Sbjct: 743 HGGRMKIRSREAVGTVISLRIP 764 >gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 676 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 179/379 (47%), Gaps = 42/379 (11%) Query: 434 KVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 ++QG ID++ +GVAVF D I L+ A R L + ++PGT +I+ Sbjct: 303 RLQG-IIDNMPQGVAVFASDDALIALNESAVRML-GLPQAEITPGTI--DIS-------- 350 Query: 493 ESDGWDLFAAIITSFDDE--RKSLQGTLELL----------------SDSVLEYSIIPLP 534 LF A++ + D R S Q T +L S ++E +P Sbjct: 351 ------LFMALLAANDTPPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRSSSMP 404 Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +L+F +VTD R E+ L E + + + KN+F+ ++S+ELR+PL IIGF++++ Sbjct: 405 GGGLILSFTDVTDRKRVEQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMM 464 Query: 595 KTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 K G L + YV+ I S LL L+NDILD++ +AG+ L + + + DL+ Sbjct: 465 KHEIFGPLEPASYRTYVDDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRG 524 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + + I + L +AD +RL Q+ + SNA+ F+ G V + A Sbjct: 525 AIRLLTRRAENAGITLSEDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAK 584 Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 FI +V + G + PE++ + V FV R R+ G GLGL + ++ I HGG Sbjct: 585 VTEAGFIITVADTGIGMTPEELLR-VMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGG 643 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S T P Sbjct: 644 TLHLDSQPGRGTVATVTFP 662 >gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus DSM 14838] Length = 431 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 136/240 (56%), Gaps = 8/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T ++T +AE L E AD K++F+ ++S+E+R+PL I+GF++LL ++ Sbjct: 166 VITVHDITRLKKAEAELNRAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLASA- 224 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S +++Q++E + +++ +L L+ DILDL+ ++AG ++ +S + +N L+ +++Q Sbjct: 225 --STEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLF 282 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ + + I++I V DR RL Q+ S ++NA+ F+ +GS + R Sbjct: 283 RMRLEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTNAVKFTDEGS-ITFGYNRCA 341 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ GS IPED +F RFV ++G GLGL+I E I GG + + S Sbjct: 342 EGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NKKGTGLGLAICEMIIRKLGGKIGVES 399 >gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 798 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780 Query: 789 PSK 791 P + Sbjct: 781 PDR 783 >gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 798 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780 Query: 789 PSK 791 P + Sbjct: 781 PDR 783 >gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33] gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 783 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 783 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 798 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780 Query: 789 PSK 791 P + Sbjct: 781 PDR 783 >gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1] gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1] Length = 783 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 783 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 783 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1] gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1] gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 783 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330] gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str. 870] gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513] gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686] gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis M163/99/10] gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94] gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str. 292] gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis M292/94/1] gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94] gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str. C68] gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99] gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330] gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 783 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13] gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 783 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19] gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Hist [Brucella melitensis biovar Abortus 2308] gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19] gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038] Length = 783 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765 Query: 789 PSK 791 P + Sbjct: 766 PDR 768 >gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 155/304 (50%), Gaps = 17/304 (5%) Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVT 546 + +S W I+ S D+ KS+ +E +D L P+ + L + Sbjct: 69 HLKDSASWRHIPVIMISAIDDMKSIIRCIEKGADDYLTKPYNPVLLKARIGSCLMKKRLH 128 Query: 547 DSVRAERALTEK------------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 D R L EK N AL KA +K+ F+ +S+ELR+PL IIGF ++L Sbjct: 129 DQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVL 188 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +G +N +Q +YV+ I +S LLN++N++LD++ ++AG ++L Y I + + +++V Sbjct: 189 KDGLVGPINDEQREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDV 248 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 +++ ++ NI IK + +FV D+ +L QI +LSNA+ F+ K V + Sbjct: 249 LNTVSGIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTL 308 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + F++ + G I ++ + +F F V ++ G GL L++ + + LHGG + Sbjct: 309 KDLYVQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEI 368 Query: 773 SISS 776 + S Sbjct: 369 WVES 372 >gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 364 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 551 AERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 A R +TE+ ++L++A +K+ F+ ++S+ELR+PL IIGF + L K G+LN KQ Sbjct: 112 AARDVTERKRFEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTLNPKQK 171 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHE 664 +Y+ I S LL L+ND+LDLA V+AG M L + VL+ ++E V + +A K H Sbjct: 172 EYLGDILNSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKH- 230 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSV 723 I +++ +L D+Q+ Q+ +LSN + F+ G V I D F SV Sbjct: 231 --IHVRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSV 288 Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 K+ G I PED+ + +F F RR G GLGL++ + L GG +++ S Sbjct: 289 KDTGIGIKPEDI-QRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGV 347 Query: 781 VTTINCRIP 789 +T + +P Sbjct: 348 GSTFSVVLP 356 >gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 586 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 21/269 (7%) Query: 544 NVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLT 585 +VT+ +RAL E NE L + A+ K+ F+ ++S+ELR+PL Sbjct: 318 DVTERHAYQRALQEANEQLEQRVVERTRELDLARCQAEEANRCKSEFLANMSHELRTPLN 377 Query: 586 NIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 IIGF+D++++ G + N++ +Y+ +I S LL ++NDILDLA V+ G L+ + Sbjct: 378 AIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGHHLLRIINDILDLAKVEVGRFDLSRES 437 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + LL + ++ + + + ++ LG + D R+ Q+ +LSNA+ F+ Sbjct: 438 TPVLPLLESAIRLVSERATRAEVNVGCKAEPGLGDAMLDPLRMKQVLLNLLSNAVKFTPA 497 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 G +V L+A + D + V + G + E+ + FV RR G GLGL + + Sbjct: 498 GGSVSLEARHEGTDLVLIVADTGIGMDEESLEKALQPFVQVESSLSRRYAGTGLGLPLAK 557 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791 SF LHGG + + S TT+ RIP K Sbjct: 558 SFSELHGGSLDLVSRPGEGTTVTVRIPRK 586 >gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] Length = 1160 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R R L + E L K ++ ++ F+ ++S+ELR+PL +II + +L K+ + K Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E I+ + LL L+ND+LDL+ V++G M LN T ++L+ +++Q + E N Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723 I + D V DR ++ QI LSNA F+S+GS VILKA D D IFSV Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDLIFSV 693 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IPE+ +F F V + G GLGLSI + +L G + + S Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753 Query: 782 TTINCRIP 789 +T ++P Sbjct: 754 STFFLKLP 761 >gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 778 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 139/255 (54%), Gaps = 11/255 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TDS R E L E EA A+ K+ F+ ++S+ELR+PL IIGF+++L + G L Sbjct: 522 DITDSRRGEDRLREAKEAAEFANRAKSEFLTNMSHELRTPLNAIIGFSEVLHSEMFGPLG 581 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +QY++Y I S LL+++NDILD++ ++AG L + +++ V + + Sbjct: 582 A--TQYLDYAASIRDSGRHLLDVINDILDVSRIEAGRATLFPEPLDFAEIVASVHRLVNQ 639 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGD 718 + +R+K+ D L + + +RL Q+ +L NA+ F+ G + L A D G Sbjct: 640 RAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLGNAIKFTPAGGEIALSARGDEDKGQ 699 Query: 719 FIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + V ++G + PED+ ++ F + R + G GLGL + ++F+ LHGG + + Sbjct: 700 MVIEVSDSGIGMAPEDIPLALEPFRQIDGQLAR-RYEGTGLGLPLSKAFVELHGGTLRVD 758 Query: 776 SSDEGVTTINCRIPS 790 S+ T I R+P+ Sbjct: 759 STPGAGTRITVRLPA 773 Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH----IRNIAATCSRYYNE 493 + DHL EGVA++GPD R+ N F SL +T R +PG +R++ A + N Sbjct: 15 DIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTGEENR 74 Query: 494 SD 495 +D Sbjct: 75 AD 76 >gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] Length = 1105 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R R L + E L K ++ ++ F+ ++S+ELR+PL +II + +L K+ + K Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E I+ + LL L+ND+LDL+ V++G M LN T ++L+ +++Q + E N Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723 I + D V DR ++ QI LSNA F+S+GS VILKA D D IFSV Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDVIFSV 693 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IPE+ +F F V + G GLGLSI + +L G + + S Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753 Query: 782 TTINCRIP 789 +T ++P Sbjct: 754 STFFLKLP 761 >gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1180 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 NE L +A E KN F+ + S+ELR+PL IIGF++L+ ++G LNSKQ +YVE I +S Sbjct: 480 NEELVQASEAKNQFLANTSHELRTPLNAIIGFSELMGNPRMGPLNSKQHRYVENIHSSGK 539 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL ++ND+LD++ ++AG+M + ++ N+V + + +++ + + G Sbjct: 540 RLLKIINDLLDISRIEAGMMVVEEQVFPPREVANQVMAEMTSLASLKGLKLTMDACPDEG 599 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIP 731 + DR +L Q+ ++ NA+ F+ +G +V L +AR + + VK+NG IP Sbjct: 600 QLIRTDRGKLHQMMVNLVGNAIKFTPEGGSVTLSMEINVVSARQR-ELVVHVKDNGIGIP 658 Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + +F FV H G R G GLGL++ + + GG VS S + +T R+ Sbjct: 659 AADLEKIFEPFV-QVHGGLARAYEGTGLGLALTRRQVRMLGGDVSGESREGDGSTFIIRL 717 Query: 789 P 789 P Sbjct: 718 P 718 >gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 508 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 5/231 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K++F+ ++S+ELR+PL IIGF+++L G +N+KQ +Y+ I AS LL L+ Sbjct: 274 ANRNKSAFLANMSHELRTPLNAIIGFSEVLIEQMFGEVNAKQLEYLRDIHASGHHLLTLI 333 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LDL+ ++AG M+L S L +LL+ + + + +R+ + + DG LG +VAD Sbjct: 334 NDVLDLSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDG-LGDWVAD 392 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 +++ Q+ +LSNA+ F+ G V L+A R D G +V + G I + VF F Sbjct: 393 PRKIKQVVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEF 452 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 R+ G GLGL++ F+ LHGG + + S+ +T +P + Sbjct: 453 RQAGTDPLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLPDR 503 >gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 1039 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 142/248 (57%), Gaps = 6/248 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 711 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++ K+ Sbjct: 712 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKS 771 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++++ ++ + ++ RL Q+ +++NA+ F+ +GS + R N + F V Sbjct: 772 DAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVA 830 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D KS+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 831 DTGCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTF 888 Query: 785 NCRIPSKE 792 +P K+ Sbjct: 889 WFTLPYKQ 896 >gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 1160 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R R L + E L K ++ ++ F+ ++S+ELR+PL +II + +L K+ + K Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E I+ + LL L+ND+LDL+ V++G M LN T ++L+ +++Q + E N Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723 I + D V DR ++ QI LSNA F+S+GS VILKA D D IFSV Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDVIFSV 693 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IPE+ +F F V + G GLGLSI + +L G + + S Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753 Query: 782 TTINCRIP 789 +T ++P Sbjct: 754 STFFLKLP 761 >gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 511 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 13/249 (5%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF++++K G+ + Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAPS-- 295 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LLNL+N+ILDL+ ++AG +LN + L ++ E + + + Sbjct: 296 YREYSHDIHDSGMHLLNLINEILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKAK 355 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723 N + DG L AD + L QI +LSNA+ F+ G + LK G ++ SV Sbjct: 356 NQTFHDLVDGSLPRLWADERALRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYV-SV 414 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K++G IPED +V + F S A + +G GLGL IV+ + LHGG +SS Sbjct: 415 KDSGPGIPEDELGTVLSSFGRGSLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREG 474 Query: 782 TTINCRIPS 790 T + +P+ Sbjct: 475 TEVVVTLPA 483 >gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] Length = 367 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 112 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 171 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 172 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 231 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 232 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 289 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 290 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 349 Query: 789 PSK 791 P + Sbjct: 350 PDR 352 >gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 1039 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 142/248 (57%), Gaps = 6/248 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 711 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++ K+ Sbjct: 712 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKS 771 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++++ ++ + ++ RL Q+ +++NA+ F+ +GS + R N + F V Sbjct: 772 DAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVA 830 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D KS+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 831 DTGCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTF 888 Query: 785 NCRIPSKE 792 +P K+ Sbjct: 889 WFTLPYKQ 896 >gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 837 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 145/267 (54%), Gaps = 4/267 (1%) Query: 526 LEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 L ++I L +L F ++T AE L A + K+ + +V++ELR+PL Sbjct: 569 LRMTLIDLNGKPVILGFSRDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPL 628 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T+IIGF+D+L K G LN Q Y+ + + LL+L+ DILDL+ +++G LNY Sbjct: 629 TSIIGFSDVLLKGKAGDLNESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYER 688 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I + +L+N++K+ I + + + D L AD ++ QI S +L NA+ F+ + Sbjct: 689 ISIIELVNDLKEYIQPFVSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEE 748 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 GS + L+ +++ D FSV + G IP+ +++F+ F + + + +G GLGL++V Sbjct: 749 GS-ITLEVSQNEDDVQFSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVN 807 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 +N+HGG + + S + + IP Sbjct: 808 KLVNMHGGQIWVESEIKKGSRFTFTIP 834 >gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1] Length = 376 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 R + + E A+ K+ F+ ++S+ELR+PL IIGF+++++ G L S + +Y+ Sbjct: 121 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 180 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++NDILD++ ++AG L+ I L L+NE + I+ + E NI ++ Sbjct: 181 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 240 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D ADR+ + Q+ +LSNA+ F+S G + ++A + ++++ G I Sbjct: 241 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 298 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+ + + F V N G GLGL+I S LHGG + I S++ T ++ I Sbjct: 299 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 358 Query: 789 PSK 791 P + Sbjct: 359 PDR 361 >gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter metallireducens GS-15] Length = 576 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 147/250 (58%), Gaps = 4/250 (1%) Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 N+ D VR A L E AD++K++F+ +S+ELR+PL +IIGFT +L G + Sbjct: 325 NLEDLVRERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPI 384 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q++ + + S+ LL+L++D+LD++ ++AG +K++ L + + +V QS+A + Sbjct: 385 NDEQAKQLTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLV 444 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + +R+ + +GS V+D++R+ Q+ +LSNA+ F+ +G T+ ++ +R++ ++ S Sbjct: 445 DKKGLRLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQG-TISVRCSRESEWYVTS 503 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I E+ + +F F V + G GLGLSI + + L GG +++ S Sbjct: 504 VADSGIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGE 563 Query: 781 VTTINCRIPS 790 +T +P+ Sbjct: 564 GSTFCFLLPA 573 >gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 773 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 141/244 (57%), Gaps = 15/244 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612 TE+ EA +A K+ F+ ++S+ELR+PL IIGF++L++ G L S S+Y EY Sbjct: 529 TERAEAANRA---KSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGS--SRYEEYATD 583 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I++S LL ++NDILD++ ++AG L+ I L L++E + ++ + + I ++ Sbjct: 584 INSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETR 643 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+D + ADR+ + QI +LSNA+ F+ +G + ++A +G + ++++NG IP Sbjct: 644 IADAL--TLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSGALVLTIEDNGCGIP 701 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRI 788 ++ + F V N G GLGL+I S L GG + I S+ EGV TI + RI Sbjct: 702 KEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRST-EGVGTIVSVRI 760 Query: 789 PSKE 792 P K+ Sbjct: 761 PVKK 764 >gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1130 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N+ L +AD KN+F+ +S+ELR+PL IIGF+ LL +K + ++ + + Sbjct: 620 QNQELVEADRQKNNFLASMSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLLQLDRVYQNG 679 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 I L LVNDILDLA + AG ++L Y + L + EV ++ + + N+ +++ D + Sbjct: 680 KIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDPSI 739 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCK 736 GS D Q+L I +LSNA ++ +G V ++A R D F V++ G I D + Sbjct: 740 GSVETDPQQLRTILINLLSNAFKYTERGE-VEVRARRPAADRFELEVRDTGVGIDPDQQQ 798 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+ F + A Q G GLGL+I + + L GG +S+ S+ +T R+P Sbjct: 799 KVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853 >gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1160 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +RA+ AL++K L +A + K+ F+ ++S+ELR+PL + + LL +K G+L +Q + Sbjct: 454 LRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQVR 513 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E I + LL L+NDILDLA ++AG ++ + + + + + + E N+ Sbjct: 514 YAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREKNLA 573 Query: 669 I-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 V+ G D QRL QI +LSNA+ F+ +G + AA+ +G FSV++ G Sbjct: 574 FSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAAQPDGRVAFSVRDTG 633 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP+ K +F F R+ G GLGLSI L GG VS+ S+ Sbjct: 634 IGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQST 685 >gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 763 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 140/236 (59%), Gaps = 2/236 (0%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN+T +AE + + + K+ F+ ++S+ELR+PL +IIGF++LL +G + Sbjct: 504 VNITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDI 563 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N+KQ +Y+ I LL+L+N+ILD++ V++G M+L+Y ++ +++++ + Sbjct: 564 NNKQERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLA 623 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 N I I D +L AD+ ++ QI +LSNA+ F+++ T+ ++A D+ Sbjct: 624 ITNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIFDDKLMQIC 683 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +K+NG I ++ + +F F + +A + +G GLGL++V++F+ +HGG++ + S Sbjct: 684 IKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDS 739 >gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 773 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 104/398 (26%), Positives = 186/398 (46%), Gaps = 38/398 (9%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q DL + + I+++SE ++ +GR+ +SN F + L G Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQ 432 Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLEYS 529 + A S Y + DG +I + D +ER++ G L + + E Sbjct: 433 RATVEAMARPALSEYPLKDDGTGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDISELK 492 Query: 530 IIPLP---NAQTMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574 + + + +F+ T+ + ++L + E A++ K+ F+ Sbjct: 493 QQQEKFEDSERRLFSFIQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLA 552 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633 ++S+ELR+PL I+GF+D++ S G L S++ +Y+ I S T LL L+NDILD++ + Sbjct: 553 NMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKI 612 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG L+ L +++E +++ + E NI + KL + V D + + QIF Sbjct: 613 EAGRFTLDCKNTDLEPIISEAVRTLTPQAQEKNIAVTTNITPKLHAEV-DGRAMKQIFLN 671 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 ++SNA+ F+ G + + A + + IF + + G IP+ K + F V N Sbjct: 672 LISNAVKFTPSGGNIDVCAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSH 731 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I S + LH G + I+S + TT+ +P Sbjct: 732 TGSGLGLAISRSLLELHKGKLEITSKEMKGTTVTIIMP 769 >gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 570 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + ++ + AD+ R++Q+ S L+NA+ F++KGS + + D F V Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S +N GG + + S + Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554 >gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 570 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + ++ + AD+ R++Q+ S L+NA+ F++KGS + + D F V Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S +N GG + + S + Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554 >gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105] gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105] Length = 1085 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 11/248 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R LT++ + A + K +F+ ++S+E+R+P+ I+G LL+ + L ++Q Y Sbjct: 680 RINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDT---DLQARQRDY 736 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +++ +LLN++NDILD++ V+A ++L++S +L+ +L++ A + E I++ Sbjct: 737 LSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEKAIQL 796 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNG 727 D S DR RL QI + +LSNA+ F+ KG + +++ D FSVK+ G Sbjct: 797 YCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADGKQLQFSVKDTG 856 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE-GVT-- 782 + E+ C ++F F RR G GLGLSI ++ + L GG + + S+ G T Sbjct: 857 IGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGLGTTFH 916 Query: 783 -TINCRIP 789 T+NC P Sbjct: 917 FTVNCVEP 924 >gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 775 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 36/421 (8%) Query: 401 HVIVTSN-PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 VI T+N PR I + ++T Q L +Y + + I+ SE ++ + R+ + Sbjct: 349 QVIRTNNGPR--VIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMC 406 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF------DD---- 509 N ++ + ++ L GT + A +R E D + ++ DD Sbjct: 407 NTHYQKAYGLPDSVLVAGTEKSAVQAAAARPVVERRVADPDQSGLSRMTEVQLADDRWLQ 466 Query: 510 --ERKSLQGTL--------------ELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRA 551 ER++ G L E L DS L +I L +Q L S Sbjct: 467 INERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDAN 526 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 L EK A + A+ K+ F+ ++S+ELR+PL I+GF+D+L+ G + S K S+Y Sbjct: 527 ANYLAEKERA-QAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSEYA 585 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LLN++NDILD++ ++AG M++N TI L L+ E + A + + NI ++ Sbjct: 586 RDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQ 645 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L + DR+ + QI +LSNA+ F+ G V L+ I ++ + G I Sbjct: 646 QKVCAGL-TMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMILTIADTGIGI 704 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + F V + + + G GLGL+I S + LHGG + I S + T + I Sbjct: 705 PAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVTIII 764 Query: 789 P 789 P Sbjct: 765 P 765 >gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 829 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 6/261 (2%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGF 590 P+P +L + + D + AL ++ A RK D +K+ F+ VS+ELR+PLT+++G Sbjct: 317 PVP-VDVVLGTMPLPDGIHIVAAL--RDAAGRKEIDRLKDDFISTVSHELRTPLTSVVGS 373 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL++ G L ++ + E +S L+ L+NDILD+ + G M Y+ I L D+ Sbjct: 374 LTLLRSGAAGQLPAEAQRLAEIAETNSQRLIRLINDILDIDQIRKGRMAFEYAVIDLRDV 433 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + ++ +IRI+ + AD RL+Q+ +LSNA+ FS + +TV Sbjct: 434 MTKAAHAMQGLADRRSIRIETLMPSTPVMACADADRLVQVAGNLLSNAVKFSPEEATVRF 493 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 + D + + ++G IP + ++F+RF + ++ G GLGL+I + H Sbjct: 494 ELIEGRDDHVIQITDSGPGIPAEFANNIFHRFARGSQPSRQIIAGTGLGLAISREIVRSH 553 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG +S + EG IP Sbjct: 554 GGEISFENRAEGGARFAFSIP 574 >gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] Length = 470 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 136/255 (53%), Gaps = 26/255 (10%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ERAL EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G+++ Q +Y Sbjct: 191 RFERALEEKNLELEHASRMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGAMSDTQREY 250 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LL+L+NDILDL+ V+AG+M L + L LL + K + I++ Sbjct: 251 IGDIFTSGQHLLSLINDILDLSKVEAGMMDLELEPVELAGLLANSLLIVREKAAQQRIQL 310 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDN-----GDFI- 720 K+ S G LG+ + D+++ QI +L+NA+ FS+ V + + RD GD+ Sbjct: 311 KLDSQGDLGTLMLDQRKTKQIVYNLLANAVKFSAHAGFVHLAVCEVDRDQVGLVPGDWPV 370 Query: 721 ---------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 SV + G I D +F F + ++ + G GLGL++V+ Sbjct: 371 YGFALQPSVHQRFLELSVSDTGIGIAADDMGKLFKAFSQIDSSLARKFEGTGLGLAMVKQ 430 Query: 764 FINLHGGHVSISSSD 778 +LHGG V+++S + Sbjct: 431 LTDLHGGSVAVASRE 445 >gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] Length = 570 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 384 --RYVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + ++ + AD+ R++Q+ S L+NA+ F++KGS + + D F V Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S +N GG + + S + Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554 >gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1146 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L+ K + L +A + K+ F+ ++S+ELR+PL +I+ +LK +K G L+ +++Y Sbjct: 472 AKNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDETKYA 531 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + LL+L+NDILDL+ +++G ++LN + + DL +++KQ + + Sbjct: 532 SVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTKGVNFV 591 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D KL + DR R+ QI +LSNA F+SK TV + + + FSVK+ G Sbjct: 592 IERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTVSVHMSEKDDFLRFSVKDTGIG 651 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPED K +F F R G GLGLSI L GH+S+ S + Sbjct: 652 IPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKGSEFTLN 711 Query: 788 IPSKE 792 IP+KE Sbjct: 712 IPTKE 716 >gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 587 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD E+AL A +AD K F+ +S+ELR+PL IIGF+++L + LN Sbjct: 305 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQALVLN 364 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y + I+ S LL++VN ILD++ +++G +L L +A + Sbjct: 365 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRA 424 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 EN + + L + D + QI ++SNA+ F+ +G V++ AA + + Sbjct: 425 RENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQLLLR 484 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779 + + G I D K + + F QRR G GLGLSIV+S +NLHGG +SI S DE Sbjct: 485 ITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLDE 544 Query: 780 GVTTINCRIP 789 G TT++ +P Sbjct: 545 G-TTVSIALP 553 >gi|89070246|ref|ZP_01157570.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89044166|gb|EAR50324.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 552 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+E+ E D KN F+ VS+ELRSPLT+I G L+ + G ++ K ++ VE Sbjct: 297 RDLSEREEM----DRAKNEFISTVSHELRSPLTSIKGAMGLVLSGAAGEISPKAAELVEI 352 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ L+ +VNDILDL + AG M+ L +L E + + ++I V Sbjct: 353 AHRNADRLVLIVNDILDLEKIAAGRMEFTLERHDLMVILREARAANNAYAERFQVKISVR 412 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D R+LQ+ + +LSNA FS GS ++ + + G SV + G IP+ Sbjct: 413 PPAAPAWANVDADRILQVLTNLLSNAAKFSRPGSEILATVSTEGGRHTVSVTDRGVGIPQ 472 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + ++F RF V N RG GLGLSIV++ + HGG VS+ S+ TT++ Sbjct: 473 EALATIFERFQQVDNPGHNAPRGSGLGLSIVKAIVESHGGSVSVDSTPGEGTTVS 527 >gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 597 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 19/269 (7%) Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHVS 577 L+ D+ +YSI N + + +S R L + N L ++ +K+ F+ ++S Sbjct: 162 LIEDNYRQYSI----NREKEQEYARTLESEIARQTAELRKANARLEESSRLKSEFLANMS 217 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +ELR+P+ I GF LL + SL++ Q +Y I SS LL L+NDILDLA ++AG Sbjct: 218 HELRTPMNAITGFAQLLADT---SLDTTQQEYCRTIRQSSATLLALINDILDLAKIEAGR 274 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696 ++L L++LL V + + E I I+V D L +++ D RL Q+ + ++ Sbjct: 275 LELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGLPRAYLGDSHRLRQVLTNLVG 334 Query: 697 NAMDFSSKGSTVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 NA+ F+ G +L +AAR F V+++G IP +++F +F Sbjct: 335 NAVKFTESGGVELLVESVAPPEAARQEQWLRFVVRDSGIGIPPHRLEAIFEKFTQADGST 394 Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I + L GG + + S Sbjct: 395 TRRFGGTGLGLAICRQLVELMGGRIEVES 423 >gi|89067396|ref|ZP_01154909.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516] gi|89046965|gb|EAR53019.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516] Length = 540 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 163/379 (43%), Gaps = 25/379 (6%) Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-- 238 L + + + L + L+W +D G + WAN +Y A Sbjct: 147 APLTLAAMEEELETLRSLGEDAPQLIWRQDADGTVSWANRAYLDTAARAAGAPAGAAPSW 206 Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGI--AID 294 +F E + ++ T S G +++ VR +SF + A Sbjct: 207 PPPAIFGEIDPPEADGAGDQQRRAVRTQS----GEELWFEVTSVRRGDSFVHFALDAAPA 262 Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354 V EI + + + +L + +AIFD++R L N S ++L + + FLAT P Sbjct: 263 VRAEIAQRNFVQTLSKTFADLAIGLAIFDRDRRLVMFNPSLMDLTRLPIDFLATKPPIQS 322 Query: 355 LLEFLRSANKLPEQLNWKTWKENIFS-VYKSSE-THKDTWHLPNGQTLHVIVTSNPRGGT 412 L+ LR LPE N+++W+E + + V ++SE T+ +TW LP GQT V +P G Sbjct: 323 FLDRLRELRMLPEPRNYRSWREELAALVAEASEGTYCETWMLPAGQTFRVTGRPHPDGAI 382 Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 ++ E++T ++ L ++ T + D L E +AVFGP G + ++N A+ LW Sbjct: 383 AFLIEDITAEMSLTRRFRTQIDTANAVFDTLDEAIAVFGPTGTLTMANAAYDGLWA---- 438 Query: 473 RLSPGTHIRNIAATCSRYYNESDGW-------DLFAAIITSFD--DERKSLQGTLELLSD 523 R +P + R +E D W DL+A I S ER+ G Sbjct: 439 RPAPPPGDGELPLREPRLGDEIDTWRGACAPTDLWADIRDSAAGVGERRPWSGRARRDDG 498 Query: 524 SVLEYSIIPLPNAQTMLTF 542 V+ + PLP T++ F Sbjct: 499 RVMRCRVAPLPGGATLVGF 517 >gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 687 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 3/256 (1%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A T++ V ++R L + A A +IK+ F+ ++S+ELR+PL +II FT ++ Sbjct: 162 ALTVIVMVRQVVAMRENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIIS 221 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T G + +Q Y+ + S LL L+NDILDL+ ++AG M+L + + DL+ V Sbjct: 222 TGARGPVTPEQIDYLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVL 281 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + + E I ++ L ADR R+ Q+ +LSNA F+ G T+ + A Sbjct: 282 ATASGLVKEKPIELRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAG-TITVHAEGC 340 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 NG+ + V + G I + + +F F + NA + G GLGL+I ++LHGG + Sbjct: 341 NGEIVIHVSDTGIGIAPEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLW 400 Query: 774 ISSSDEGVTTINCRIP 789 + S+ +T + +P Sbjct: 401 VESAVGVGSTFSFSLP 416 >gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 709 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 121/461 (26%), Positives = 215/461 (46%), Gaps = 65/461 (14%) Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYN 430 T + IF V+ S T +D W Q ++ + GG I + ++T Q LE +Y Sbjct: 269 TQLDKIFRVHYS--TGRDVWIKVRAQVMNTL-----SGGMNVIGIAMDVTEQYYLEKRYA 321 Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490 + + + I+ SE ++ + R+ + N ++ ++ ++ L PGT R+I Sbjct: 322 EVDQRLSKAIECTSESFVLWDKNDRLVMCNAKYQQVYGLPDHVLIPGTK-RSI------- 373 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 NE+ ++ + + K LQ ++L+ L+ + P+A T+ ++T Sbjct: 374 INEAQ----INPVVEYYTSDPKRLQNISKEIKLVDSRWLQINEWHTPDAGTISVGTDITQ 429 Query: 548 SVRAERALTEKNEALRK-----------------------------------ADEIKNSF 572 R ++ L E L+ A+ K+ F Sbjct: 430 LKRNQKKLRESERRLKATINDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEF 489 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLA 631 + +S+ELR+PL I+GF++++K G L S K +YV+ I S LLNL+N+IL+++ Sbjct: 490 LAKMSHELRTPLNAILGFSEIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMS 549 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQI 690 +++ + +N L ++NE QSIA+ + NI I K IS + AD + + +I Sbjct: 550 KIESEHIAINKKNTNLIPIINESLQSIASSAQKKNIMIEKNISPELFCN--ADERIIKKI 607 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748 + I SN++ F++ G +I++ +R N I +V + G IP+ K V F + N + Sbjct: 608 LTPIFSNSIKFTNNGGKMIVQTSRVNDSVIITVADTGIGIPKSALKKVGKPFEQLHNQYD 667 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I ++ NLHGG + I S + T I +P Sbjct: 668 QNTGGSGLGLAISDALTNLHGGKLEILSQEGEGTVIKIGMP 708 >gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 769 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 113/421 (26%), Positives = 195/421 (46%), Gaps = 35/421 (8%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI +++ R I + ++T Q L +Y + + I+ SE ++ + R+ + N Sbjct: 349 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSR-----YYNESDGWDLFAAIITSFDDER---- 511 F+ + ++ L PGT + A +R +++DG DER Sbjct: 409 THFQQAYGLPDSVLVPGTERSTVNAAAARPVIERRISDADGSGYSRTTEVQLADERWLQI 468 Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 S+ + L+ S+ L +I L ++ L S Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANS 528 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 EK A A++ K+ F+ ++S+ELR+PL I+GF+++L+ G L S K +Y Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 I S LLN++NDILD++ ++AG ++L+ I L L+ E + A E NI I + Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLVPLIEESLRFTAMPAAEKNIVIEQ 647 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I G + +ADR+ + Q+ +LSNA+ F+ G + ++ R +G + ++ + G I Sbjct: 648 RICSGL--TLMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVVVTIADTGIGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + F V + + + G GLGL+I S +LHGG + I S + T I+ RI Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRI 765 Query: 789 P 789 P Sbjct: 766 P 766 >gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 769 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 130/505 (25%), Positives = 220/505 (43%), Gaps = 56/505 (11%) Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETH 388 F NR F W + + P +D+ + F +A + P+ E ++ K S Sbjct: 273 FENREF--FWSRSMYDMLGLPGSDKTMGFGEAARLMHPDD---GGLYEIARAIGKGSSGQ 327 Query: 389 KD------------TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436 D W Q VI +++ R I + ++T Q L +Y + Sbjct: 328 VDQIFRMRHAGGHYVWMRARAQ---VIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRL 384 Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR-----YY 491 + I+ SE ++ + R+ + N F+ + ++ L PGT + A +R Sbjct: 385 ADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERRI 444 Query: 492 NESDGWDLFAAIITSFDDER--------------KSLQGTLELL---------SDSVLEY 528 +++DG DER S+ + L+ S+ L Sbjct: 445 SDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLMA 504 Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 +I L ++ L S EK A A++ K+ F+ ++S+ELR+PL I+ Sbjct: 505 TIGDLSASRQTLEIQKSELSTANANYQAEKERA-EAANKAKSEFLANMSHELRTPLNAIL 563 Query: 589 GFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 GF+++L+ G L S K +Y I S LLN++NDILD++ ++AG ++L+ I L Sbjct: 564 GFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDL 623 Query: 648 NDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L+ E + A E NI I + I G + +ADR+ + Q+ +LSNA+ F+ G Sbjct: 624 VPLIEESLRFTAMPAAEKNIVIEQRICSGL--TLMADRRAMKQVLLNLLSNAVKFTDNGG 681 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 + L+ R +G ++ + G IP + F V + + + G GLGL+I S Sbjct: 682 RIALRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSL 741 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 +LHGG + I S + T I+ RIP Sbjct: 742 TSLHGGRMKIRSREAVGTVISLRIP 766 >gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 733 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K+ F+ +++ELR+PLT +IG + L LG LN KQ Y++ I S LL L+ Sbjct: 356 AHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPLNDKQRSYLKTIHDSGEHLLELI 415 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVA 682 NDILDL+ V+AG L+ S LN L + + K E + +K+ S + F A Sbjct: 416 NDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLESLIPSEFERFCA 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D++R+ QI +LSNA+ F+ G V L++ +NG +F V++ G I +F +F Sbjct: 476 DQRRVRQILFNLLSNAIKFTPAGGRVTLRSWVENGKALFQVEDTGIGISLSQQPLLFQKF 535 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791 + ++ GVGLGL++ + + LH G + + S+ EG+ +I +P++ Sbjct: 536 QQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVEST-EGIGSIFTVELPAQ 586 >gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 145/250 (58%), Gaps = 4/250 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T+ +AE A+ A A++ K+ F+ ++S+ELR+PL +IIGF+D++ GSLN Sbjct: 110 NITERKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSLN 169 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +++ + ++ LLN++NDIL + ++ G M+L+ S +++ +NE++ + Sbjct: 170 ELQKKFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIAS 229 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E NI +K D + + AD + QI +++NA+ F+++G V ++ + DF+ S Sbjct: 230 EKNIELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISD-DFVHIS 288 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK++G I D +F F V +++ + G GLGL+IV+ ++ +HGG V + S Sbjct: 289 VKDSGIGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGK 348 Query: 781 VTTINCRIPS 790 +T R+P+ Sbjct: 349 GSTFGFRMPT 358 >gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 535 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + +R L++ NE L +++ +K+ F +++ELR+PLT+++ F +L+ G + +Q + Sbjct: 281 QGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPITPEQREN 340 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S+ L+ LVNDILD+A +AG ++++ + LND+L V++S++ H+N I + Sbjct: 341 LLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGISL 400 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGS 728 V L DR R+ Q+ +++NA+ F+ G + + +A GDF I SV++ G Sbjct: 401 DV-EKTTLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITV-SANGEGDFAIISVQDTGI 458 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776 I ++ +F +F H QRR G GLGL++V++ L G V++ S Sbjct: 459 GISPELLPHIFEKFRQGDHPKQRRKGTGLGLALVKTLAELQDGKVAVDS 507 >gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 770 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 187/384 (48%), Gaps = 34/384 (8%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY------ 491 + I+ +SE ++ R+ + N F+SL + ++PGT +AA + Sbjct: 371 DAIESISESFVLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVRIPLR 430 Query: 492 ---NESDGWDLFAAIITSFD----DERKSLQG----------TLELLSDSVLEYS----- 529 +G F A + ER++ G L+ + ++E Sbjct: 431 PEDRPEEGARAFEAQLEGGRWLKVTERRTKDGGYVSVGTDITALKRHEERLMESEKRLMA 490 Query: 530 -IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 + L +Q L + + A+ EK +A A+ K+ F+ ++S+ELR+PL II Sbjct: 491 LVADLRKSQQTLEMQALQLAELAQNYADEKTKA-EDANRAKSEFLANMSHELRTPLNAII 549 Query: 589 GFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 GF++L+++ G L S K ++Y I S LL+++NDILD++ ++AG M LN + L Sbjct: 550 GFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRMHLNLQPVEL 609 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++++ + + ++ + E I + +DG + S AD++ L QI +LSNA+ F+ + Sbjct: 610 DEVVTDSIRVMSVRADEKQITVAADTDGAV-SLEADKRALKQITLNLLSNAIKFTPENGR 668 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 V ++ R + ++++G IP+ + F V + +G GLGL+I +S + Sbjct: 669 VSVRTRRSARAALLVIEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGSGLGLAIAKSLV 728 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 LHGG + I SS+ TT+ R+P Sbjct: 729 ELHGGTMRIRSSEGVGTTVIIRLP 752 >gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 576 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 32/280 (11%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DDQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711 I++K+ +D G DR++ QI +L+NA+ FS G VIL Sbjct: 411 LQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVPRSQAGVL 470 Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 + DN F+ SV + G I + +F F S G R G GL Sbjct: 471 EGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792 GL++V+ LHGG V+++S D G V + R P+ E Sbjct: 530 GLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASE 569 >gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 769 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 116/421 (27%), Positives = 193/421 (45%), Gaps = 35/421 (8%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI +++ R I + ++T Q L +Y + + I+ SE ++ + R+ + N Sbjct: 349 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408 Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511 F+ + ++ L PGT I N AA R ++DG DER Sbjct: 409 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGSGYSRTTEVQLADERWLQI 468 Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 S+ + L+ S+ L +I L ++ L S Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLELQKAELSTANA 528 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 EK A A++ K+ F+ ++S+ELR+PL I+GF+++L+ G L S K +Y Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 I S LLN++NDILD++ ++AG ++L+ I L L+ E + A E NI I + Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHLRLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQ 647 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I G + +ADR+ + Q+ +LSNA+ F+ G + ++ R +G ++ + G I Sbjct: 648 RICSGM--ALMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + F V + + + G GLGL+I S LHGG + I S + T I+ RI Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 765 Query: 789 P 789 P Sbjct: 766 P 766 >gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 729 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 139/250 (55%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+S AE L EK A A+ K+ F+ ++S+ELR+PL +IIGF DLL G LN Sbjct: 464 DITESKAAETLLQEKQIA-EAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYGELN 522 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + V IS S LLNL+N ILDL+ ++AG M+L+Y L LN +K ++ Sbjct: 523 ERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSPIAD 582 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 N++I++ D L S AD R +QI ++ NA+ FS + V ++ AR GD + + Sbjct: 583 RKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIE-ARKKGDLVEIT 641 Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V + G I PED K +F F V + Q +G GLGLS+V+ + LHGG + S Sbjct: 642 VTDTGIGIKPEDQSK-LFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKPG 700 Query: 780 GVTTINCRIP 789 +T IP Sbjct: 701 EGSTFAFVIP 710 >gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 912 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 132/232 (56%), Gaps = 6/232 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD R E+ L ++D +K++F+ ++S+E+R+PL I+GF+ +L T+ Sbjct: 528 ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATA---EEEE 584 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++S+Y+ I ++ +LL L++D+LD+A ++AG + NYS++ LN L+NE++ + ++ Sbjct: 585 EKSEYINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRITS 644 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++ +++I D + +R RL QI +L+NA+ F+ KG + F V Sbjct: 645 PDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQKGK-ITFGYKLQKEKIYFYVT 703 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + +F RF+ + Q G GLGLSI +S ++ GG + + S Sbjct: 704 DTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGGEIGVDS 753 >gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1070 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 137/265 (51%), Gaps = 11/265 (4%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 PLP + + F +VT+ + ++AL E A+ K+ F+ ++S+E+R+PL I+G Sbjct: 663 PLPGEKVAVAFEDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGML 722 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L S++ + Y+ SS LL ++ND+LD VDAG M++ L+DLL Sbjct: 723 QLAMQSEV---PPELEDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLL 779 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ + I + + + +G FV D RL QI ++ NA+ F+ GS V L+ Sbjct: 780 SQAVNFFRALAMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGS-VTLE 838 Query: 712 A--ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 A + GD +F+V++ G IP D VF F V + + +G GLGL IV+ Sbjct: 839 AWPVGEQGDATRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRL 898 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + L GG++S+ S + TTI +P Sbjct: 899 VTLMGGNISVESMEGEGTTIFFVLP 923 >gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 769 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 117/421 (27%), Positives = 194/421 (46%), Gaps = 35/421 (8%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI +++ R I + ++T Q L +Y + + I+ SE ++ + R+ + N Sbjct: 349 QVIRSNSGRVHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408 Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511 F+ + ++ L PGT I N AA R ++DG DER Sbjct: 409 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGPGYSRTTEVQLADERWLQI 468 Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 S+ + L+ S+ L +I L ++ L S Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANA 528 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 EK A A++ K+ F+ ++S+ELR+PL I+GF+++L+ G L S K +Y Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 I S LLN++NDILD++ ++AG ++L+ I L L+ E + A E NI I + Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNIVIDQ 647 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 IS G + ADR+ + Q+ +LSNA+ F+ G + ++ R +G + ++ + G I Sbjct: 648 RISSGL--TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRIDGAVLVTIADTGIGI 705 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + F V + + + G GLGL+I S LHGG + I S + T I+ RI Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 765 Query: 789 P 789 P Sbjct: 766 P 766 >gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 610 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD E+AL A +AD K F+ +S+ELR+PL IIGF+++L ++ LN Sbjct: 328 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLN 387 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y + I+ S LL++VN ILD++ +++G +L L +A + Sbjct: 388 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRA 447 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 EN + + + L D + QI ++SNA+ F+ +G V + A D + Sbjct: 448 RENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGVDGARLLLR 507 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779 + + G I D K + + F QRR G GLGLSIV+S + LHGG +SI S DE Sbjct: 508 ITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDE 567 Query: 780 GVTT-----INC 786 G T INC Sbjct: 568 GTTVTIALPINC 579 >gi|90418498|ref|ZP_01226410.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90338170|gb|EAS51821.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 698 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +KN F+ +S+ELR+PLT+I G L+ G L K + VE +S L+ L+NDI Sbjct: 215 VKNEFIATISHELRTPLTSIRGSLGLITAGVTGELPPKAAHMVEIAHNNSERLVLLINDI 274 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL +++G M + L LL++ S ++ M E + I+++ + D RL Sbjct: 275 LDLEKLESGKMPFDLQHTRLRPLLDQAISSSSSYMPERRVTIRLVDEAPDIEAKTDPNRL 334 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744 Q+F+ ILSNA+ FS G TV + AR D++ SV + G IPE K +F +F Sbjct: 335 HQVFANILSNAIKFSPTGGTVTVTIARLGDDWVRMSVSDEGQGIPESFRKRIFGKFEQAD 394 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 Q+ G GLGLSI ++ + GG + + D G TT + +P + Sbjct: 395 ATDNRQKGGTGLGLSIAKTIVEKLGGRIGFDTGDTG-TTFHVDLPEQ 440 >gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM 17393] Length = 381 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 136/240 (56%), Gaps = 8/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T ++T +AE L + E AD K++F+ ++S+E+R+PL I+GF++LL ++ Sbjct: 116 VITVHDITRLKKAEVELHKAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLASA- 174 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S +++Q++E + +++ +L L+ DILDL+ ++AG ++ +S + + L+ +++Q Sbjct: 175 --STEEEKTQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLF 232 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ + I++I + + DR RL Q+ S ++NA+ F+ +GS + R Sbjct: 233 RMRLEDKAAVIQIIRETPADECIMYTDRNRLQQVVSNFMTNAVKFTDEGS-ITFGYNRCA 291 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ GS IPED +F RFV ++G GLGL+I E I GG + + S Sbjct: 292 EGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NKKGTGLGLAICEMIIRKLGGKIGVES 349 >gi|119385502|ref|YP_916558.1| putative PAS/PAC sensor protein [Paracoccus denitrificans PD1222] gi|119375269|gb|ABL70862.1| putative PAS/PAC sensor protein [Paracoccus denitrificans PD1222] Length = 531 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 170/402 (42%), Gaps = 38/402 (9%) Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241 +L + + + + + D L W +D G + WAN +Y E KA G++ Sbjct: 143 SLSLRAMEQELEILRSAMDHSPMLAWRQDPQGQVTWANSAYLNLAEV------KARGQTV 196 Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301 I + G ++ Y L+ G +AI + + V Sbjct: 197 WPLPRIIDLSARPVQPATSGGARRMQVDHDGQSRWYDCH--LHEIGGQTVAIALPADAAV 254 Query: 302 NDQ---------LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 + LT T+ +L + +AIFD++R LQ N + ++L + FL P+ Sbjct: 255 RAERSLREFVQTLTKTFA---DLPIGLAIFDRDRNLQLFNPALIDLTGLATGFLTARPTL 311 Query: 353 DELLEFLRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410 L+ LR A +PE ++++W+ N SS H + W LP GQT V +P G Sbjct: 312 YAFLDRLREARMVPEPKDYRSWRNQMNTLEAAASSGHHVEMWSLPGGQTYRVTGRPHPDG 371 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 ++FE++T ++ L K+ + + E +D L + VAVFG +G + +SN + LW Sbjct: 372 AVAFLFEDITSEISLTRKFRADLSLGAEVLDALEDAVAVFGANGDLLISNRRYADLWDAA 431 Query: 471 ENRLSPGT---HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527 +PGT H++ C + L A+ + DE L+G + + +L Sbjct: 432 ----APGTLEGHVQVWTDACGASPGLA---ALREALNAALPDE--PLRGAMAGPAGGLLS 482 Query: 528 YSIIPLPNAQTMLTFVNVTDSVR----AERALTEKNEALRKA 565 + + L A+ +L+F S+ A RA + A R A Sbjct: 483 WGLRGLSGARLLLSFAAPVPSLPVGRDAPRAAHDPEPAERAA 524 >gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 583 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 34/345 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EG+ V P G I L NPAF+ L+ +++ G + +I SR+ A Sbjct: 256 MGEGIMVADPQGTITLVNPAFKGLFGLQDD--VEGRQLIDI----SRH----------PA 299 Query: 503 IITSFDDERKSLQGTLELLS-DSVLEYSI----IPLPNAQTMLTFVNVTDSVRAERALTE 557 + SF D + Q +E L S E S+ +PL + V V + Sbjct: 300 LHESFRDIISTRQERIEELQLHSPKERSVLIHWVPLLEGVVLNGVVAVFHDI-------- 351 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +R+ ++I+ FV +VS+ELR+P+T I G+ + L L + S+ +++V+ + + + Sbjct: 352 --SDIRQLEKIRRDFVANVSHELRTPVTIIKGYAETLIAGALEN-PSQAAKFVKIMYSHA 408 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L L++D+L L+ +++G + L ++ + D+ V + K+ E +I + + Sbjct: 409 DRLAVLISDLLTLSQLESGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGA 468 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + +AD RL Q+ ++ NA+ ++ G +V L AA D+G + +V++ G IP Sbjct: 469 ANVLADPVRLEQVIVNLVDNAVKYTPAGGSVTLTAAEDDGRVVIAVRDTGIGIPPKDLPR 528 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +F RF V A G GLGLSIV+ + LHGG VS SS +G Sbjct: 529 IFERFYRVDTARSRDEGGTGLGLSIVKHILQLHGGTVSAESSGQG 573 >gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 419 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 168/324 (51%), Gaps = 25/324 (7%) Query: 470 EENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVL 526 E R+ H RN IAA + + + I +F ++R K L +++LLS+ Sbjct: 79 EIKRVGDLLHCRNAIAAGECGKHEQCKLCCIRTFISKAFYEKRSFKKLDASMQLLSED-- 136 Query: 527 EYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 E ++IP + +LT +VT+ +R L + E AD++K++F+ Sbjct: 137 EKTVIPCDVSVSGVYLKINGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIA 196 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+E+R+PL I+GF+ L+ T+ + ++ Y + IS ++ LL LVNDI DL+ +D Sbjct: 197 NMSHEVRTPLNAIVGFSGLMATA---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQID 253 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692 AG++ YS NDLL E++ +++EN + + ++ + L + +++QR++Q+ + Sbjct: 254 AGVLNFVYSEFDANDLLRELEGLFGMRLNENPL-VALVCEAHLEPIMMHSEKQRIIQVLT 312 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 +L NAM F+ G + F V + G IP++ + +F+RF Q Sbjct: 313 NLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ-- 370 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL++ ++ ++ GG + S Sbjct: 371 GTGLGLTLSQTIVHNFGGRFGVES 394 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 12/275 (4%) Query: 526 LEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 LE IP +T F ++T+ RAE AL + A++ K+ F+ ++S+E+R+P+ Sbjct: 638 LEARNIPYKAKHVRVTEFRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPI 697 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 ++G LL+T+ L+++Q+ Y+ + ++ L L+ DILDL+ V+AG M++ + Sbjct: 698 NGVMGMLQLLETT---PLDAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAP 754 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + D+++ V A N+ ++ ++ G V D R+ Q+ ++ NA+ F+ Sbjct: 755 FQIQDIIDSVSGLFAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTE 814 Query: 704 KGSTVI---LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 +G V+ A+D+GD+ F V + G I ED +F F V N+ +G GL Sbjct: 815 RGRVVMDITALPAKDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGL 874 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GLSIV+ + L GG ++I S+ T+ + +P K Sbjct: 875 GLSIVQRLVGLMGGTITIESTLGQGTSAHVVLPFK 909 >gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 885 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 2/227 (0%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD +K FV S+ELR+PLT+I G+ DLL + LG L +Q Q++ + + L ++ Sbjct: 643 ADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLTEQQRQFLSVVKNNIERLNAIL 702 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 ND+LD++ +++G ++L I L++L+ SI + I + + L +AD Sbjct: 703 NDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMIADP 762 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743 +R+ QI + ++SNA ++ G + + + +VK++G I D K +F RF Sbjct: 763 ERMRQIVTNLISNAYKYTRDGGRIDVVVSNGGDSVTLAVKDSGVGIAADDQKHIFTRFFR 822 Query: 744 -SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N + Q G GLGL+I +S + LHGG + S + TT N ++P Sbjct: 823 SENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLP 869 >gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 778 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 118/421 (28%), Positives = 194/421 (46%), Gaps = 36/421 (8%) Query: 401 HVIVTSN-PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 VI T+N PR I + ++T Q L +Y + + I+ SE ++ + R+ + Sbjct: 352 QVIRTNNGPR--VIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMC 409 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDD---- 509 N ++ + ++ L GT + A +R E D + ++ DD Sbjct: 410 NIHYQKAYGLPDSVLVAGTEKSTVYAAAARPVVERRVADPDQSGLSRTTEVQLADDRWLQ 469 Query: 510 --ERKSLQGTL--------------ELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRA 551 ER++ G L E L DS L +I L +Q L S Sbjct: 470 INERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDAN 529 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 L EK A + A+ K+ F+ ++S+ELR+PL I+GF+++L+ G + S K S+Y Sbjct: 530 ANYLAEKERA-QAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSEYA 588 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LLN++NDILD++ ++AG M++N TI L L+ E + A + + NI ++ Sbjct: 589 RDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQ 648 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L + DR+ + QI ILSNA+ F+ G + L+ I ++ + G I Sbjct: 649 QKVCAGL-TMQGDRRAMKQIMLNILSNAVKFTGDGGRIALRTHVHEAAMILTIADTGIGI 707 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + F V + + + G GLGL+I S + LHGG + I S + T + I Sbjct: 708 PAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTIII 767 Query: 789 P 789 P Sbjct: 768 P 768 >gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1] gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 816 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 3/247 (1%) Query: 546 TDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 T+ ++ ++ L E ++ L K + KN F+ ++S+ELR+PL +I+G T+L+ K L++ Sbjct: 263 TEELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTPLNSIVGLTELI--LKNNQLDN 320 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + + ++ I+ S LLN++NDILDL+ +++G + L I L + ++ V I + +E Sbjct: 321 ELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNE 380 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 NI KVI K D+ +L QI +LSN++ ++ + + L D I VK Sbjct: 381 KNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYTEENGLIELIIEEDTKYIIIHVK 440 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IPED+ +++F FV+ + +G GLGL + + +NL GG +++ S T Sbjct: 441 DTGIGIPEDLMQNLFEPFVTMGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEGTIF 500 Query: 785 NCRIPSK 791 IP + Sbjct: 501 TVYIPKE 507 >gi|56698679|ref|YP_169056.1| hypothetical protein SPO3868 [Ruegeria pomeroyi DSS-3] gi|56680416|gb|AAV97082.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 500 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/369 (23%), Positives = 168/369 (45%), Gaps = 15/369 (4%) Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254 ++ D + VW+ D G I W N +Y ++ +K G + +LF Sbjct: 140 LRLAMDQAPYPVWYLDGDGGIRWCNAAYV-------MLARKVRGRNPELFDPLFPDTSDI 192 Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSKEITVNDQLTHTYE 310 S +K +++ E + +V V G A+D V EI + + + Sbjct: 193 GSPGKKTRI-SITIGETRTKLWFDVVIVPQDTGCLCYAMDINAVVDAEIAQRNFVQTLAK 251 Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 L++ +AIFD+NR L N + ++L + FL++ P + LR+ N +PE N Sbjct: 252 TFAQLSIGLAIFDRNRQLALFNPALIDLTCLPADFLSSRPEVSSFFDRLRNLNMMPEPKN 311 Query: 371 WKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428 + W++ + + +++ +++TW LP+G V +P G ++FE++T ++ L + Sbjct: 312 YGGWRQQMNDLLQAASKGNYQETWSLPSGSVYSVSGRPHPDGAVAFLFEDITAEITLTRR 371 Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 + + +++ +DHL +AVF DG + SN A+ LWK++ R I + T Sbjct: 372 FRSELELGQAVLDHLDAAIAVFASDGSLAFSNAAYHQLWKSDPERSFAQVTILDATRTWQ 431 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 + W + S ++ R +G ++L S + L ++ P+ N T+++F + D Sbjct: 432 DLCTATPVWGEIRDFVDSREN-RVEWEGQVQLRSGANLTCTVSPIQNGSTLISFTTLIDD 490 Query: 549 VRAERALTE 557 + A E Sbjct: 491 LARSPAQAE 499 >gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1170 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 3/242 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L ++ + L++A K+ F+ ++S+ELR+PL + + LL + G+L+ +Q Q+ Sbjct: 474 AQLMLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSEEQVQFA 533 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ LL L+NDILD++ V+AG ++++ +L L++ +K + E + Sbjct: 534 RSIYSAGNDLLTLINDILDISKVEAGKLEVHPELTILARLVDGMKSLFLPQAMEKALSFS 593 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V ++D + DRQRL QI +L+NA F+ KGS + RD G F+V++ G Sbjct: 594 VELADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIG 653 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + ++F F RR G GLGLSI NL GG + + S+ +T Sbjct: 654 IAPEQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLV 713 Query: 788 IP 789 +P Sbjct: 714 LP 715 >gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Magnetospirillum gryphiswaldense MSR-1] Length = 753 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 2/244 (0%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R R + N L ++D K+ F+ H+S+ELR+PL ++GF+++L G + +QS+ Sbjct: 505 LRQLRTIRLLNLQLAESDRAKSRFLAHMSHELRTPLNAVLGFSEMLGMGIYGQVVQRQSE 564 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + ++ ++ LLN++ND+LDL+ ++AG + + ++ L +Q +++ E + Sbjct: 565 AIGHVRDAARHLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQQLLSSLTREAEVT 624 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I+V L ADR+ LLQI +LSNA+ F+ +V + D +V + G Sbjct: 625 IRVEVPSALPRLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCREDASGLCLTVHDTGI 684 Query: 729 SIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D V F + R+G GLGL IV+S + LHGG + +SS+ T + Sbjct: 685 GIAADQLARVLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTIHLSSTLGQGTCVTL 744 Query: 787 RIPS 790 P Sbjct: 745 TFPP 748 >gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4] Length = 790 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 136/522 (26%), Positives = 227/522 (43%), Gaps = 62/522 (11%) Query: 323 DQNRYLQFH-NRSFVELWEIDLA------------FLATNPSNDELLEFLRSANKL-PEQ 368 D NR ++ +R LW+ DLA L PSN E L F +A + P+ Sbjct: 254 DSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSN-EPLGFADAARLMHPDD 312 Query: 369 LNWKTWKENIFSVYKSSETHKDT---WHLPNGQTL------HVIVTSNPRGGTIWMFENL 419 N I + + H D NG + VI TS+ I + ++ Sbjct: 313 GNLYALARTI---GRDGDRHIDQVFRMRHANGHYVWLRARAQVIRTSSGSPHVIGIAMDV 369 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q L +Y + + I+ SE ++ + R+ + N F+ ++ ++ L PG Sbjct: 370 TEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGVE 429 Query: 480 I-------------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--- 523 R IA ++ + + L ++ R G + + +D Sbjct: 430 RAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITL 489 Query: 524 ------------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 L +I L ++Q L S E+ L EK A A++ K+ Sbjct: 490 LKRHQERLREQERRLMATIGDLSSSQKKLERQKAELSEANEKYLAEKQRA-EAANKAKSE 548 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDL 630 F+ ++S+ELR+PL I+GF+++L T G + S K +Y I S LLN++NDILD+ Sbjct: 549 FLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKYGEYARDIHDSGKHLLNVINDILDM 608 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQ 689 + ++AG M L + L++E + + NI I + I+ G + ADR+ L Q Sbjct: 609 SKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKNIAIEQRIASGL--AMTADRRALKQ 666 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747 I ILSNA+ F+++G + ++A + +G V + G IP+ + F V + + Sbjct: 667 ILLNILSNAVKFTNEGGRISVRAHKIDGAVRLLVSDTGIGIPKQAISKIGQPFEQVQSQY 726 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGL+I S I LHGG + I S + T ++ +P Sbjct: 727 AKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTVVSINVP 768 >gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1017 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 25/247 (10%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT NEAL +A++ K+ F+ ++S+ELR+PLT+I GF++ L +G LN Q++Y++ I+ Sbjct: 308 LTSANEALTRANQAKSQFISNMSHELRTPLTSINGFSEFLIDGFVGPLNETQTKYLKNIN 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKV 671 S LL L+N ILDLA ++AG M L + + LL+E V Q ATK ++R+ + Sbjct: 368 ISGKHLLELINGILDLAKIEAGKMTLKLEKVDVAALLDEILLVLQGYATK---TSVRLLL 424 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGD------ 718 D + V DR + QI + SNA+ FS +G V + A + N D Sbjct: 425 ECDAAIPGIVLDRTKFKQILYNLCSNAIKFSPQGGEVRIVVDYNNSAAGQHNDDELESYA 484 Query: 719 -FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ + G I PED +FN F +H G GLGL++ + + +HGG + + Sbjct: 485 RLTVAIHDEGIGISPEDQVH-IFNPFEQADGSHSRNYEGTGLGLTLTQRLVEMHGGSIEV 543 Query: 775 SSS-DEG 780 +S+ D+G Sbjct: 544 NSAPDKG 550 >gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 868 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T+ E L + K+ +K+ F+ +VS+E+R+PL IIGFT+LL +G Sbjct: 342 FRDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTPLNAIIGFTNLL----MGE 397 Query: 602 LNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + ++SQ YV YI + LL L+NDILD + ++AG + L + + + +L +E+ + Sbjct: 398 VTDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKAPVSIRELADEISAIMHH 457 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------ 713 + E I + + L F+ D+ RL QI + NA+ F+ KGS V L+ A Sbjct: 458 RAVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFTEKGS-VKLRVAPIGEPL 516 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771 D + F VK+ G IP+D K VFNRFV R G GLGLSIV+S + L G Sbjct: 517 NDVQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGTGLGLSIVKSLVQLFEGT 576 Query: 772 VSISS 776 +++ S Sbjct: 577 LNLES 581 >gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1015 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 630 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 686 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L++DILDL+ ++AG ++ YS I LN L +++ ++ K+ Sbjct: 687 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 746 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++++ + + ++ RL Q+ +++NA+ F+S+GS R + F V Sbjct: 747 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 805 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +S+F RFV Q G GLGLSI + + GGH+ + S + +T Sbjct: 806 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 863 Query: 785 NCRIPSK 791 +P K Sbjct: 864 WFSLPYK 870 >gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] Length = 773 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/398 (25%), Positives = 184/398 (46%), Gaps = 38/398 (9%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q DL + + I+++SE ++ +GR+ +SN F + L G Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQILQSGIQ 432 Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLEYS 529 + A S Y + DG +I + D +ER++ G L + + E Sbjct: 433 RATVEAMARPAISEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDISELK 492 Query: 530 IIPLP---NAQTMLTFVNVTDSVRAE------------RALTEKNEALRKADEIKNSFVQ 574 + + + +F+ R ++L + E A++ K+ F+ Sbjct: 493 QQQEKFEDSERRLFSFIQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLA 552 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633 ++S+ELR+PL I+GF+D++ S G L S++ +Y+ I S T LL L+NDILD++ + Sbjct: 553 NMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKI 612 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG L+ L +++E +++ + E NI + +L + V D + + QIF Sbjct: 613 EAGRFSLDCKNTDLEPIISEAVRTLTPQAQEKNIVVTTNITPELHAEV-DGRAMKQIFLN 671 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 ++SNA+ F+ G + + A + + IF + + G IP+ K + F V N Sbjct: 672 LISNAVKFTPSGGNIDVCAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSH 731 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I S + LH G + I+S + TT+ +P Sbjct: 732 TGSGLGLAISRSLLELHKGKLEITSKEMKGTTVTIIMP 769 >gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1039 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 654 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L++DILDL+ ++AG ++ YS I LN L +++ ++ K+ Sbjct: 711 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 770 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++++ + + ++ RL Q+ +++NA+ F+S+GS R + F V Sbjct: 771 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 829 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +S+F RFV Q G GLGLSI + + GGH+ + S + +T Sbjct: 830 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 887 Query: 785 NCRIPSK 791 +P K Sbjct: 888 WFSLPYK 894 >gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5] Length = 651 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 144/257 (56%), Gaps = 15/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 +VT+ + E+ L E +D +K++F+ ++S+E+R+PL I+GF++LL +T +G Sbjct: 267 DVTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLLAETDDIG-- 324 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ + ++ +LL L++DILDL+ ++AG + NY + +N + E S++ K+ Sbjct: 325 --ERREYMRVVEENNELLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKV 382 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + + V D+ RL+Q+ + ++NA+ F+ +GS + L + G+ +F Sbjct: 383 KDKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVKFTDEGS-ITLGYRTEGGELLFH 441 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG- 780 V++ GS I E+ +S+F+RFV Q G GLGLSI +S + GG + + S G Sbjct: 442 VEDTGSGISEEHRQSIFDRFVKLNSFAQ--GTGLGLSISKSIVEQMGGRIGVESEVGRGS 499 Query: 781 -----VTTINCRIPSKE 792 + + C P K+ Sbjct: 500 RFWFTIPAVTCDAPEKK 516 >gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1053 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 668 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 724 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L++DILDL+ ++AG ++ YS I LN L +++ ++ K+ Sbjct: 725 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 784 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++++ + + ++ RL Q+ +++NA+ F+S+GS R + F V Sbjct: 785 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 843 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +S+F RFV Q G GLGLSI + + GGH+ + S + +T Sbjct: 844 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 901 Query: 785 NCRIPSK 791 +P K Sbjct: 902 WFSLPYK 908 >gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 638R] Length = 1015 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 630 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 686 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L++DILDL+ ++AG ++ YS I LN L +++ ++ K+ Sbjct: 687 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 746 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++++ + + ++ RL Q+ +++NA+ F+S+GS R + F V Sbjct: 747 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGSIRFGYEHR-GKELYFYVT 805 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +S+F RFV Q G GLGLSI + + GGH+ + S + +T Sbjct: 806 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 863 Query: 785 NCRIPSK 791 +P K Sbjct: 864 WFSLPYK 870 >gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 388 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 145/253 (57%), Gaps = 8/253 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T ++T + E L E AD K+ F+ ++S+E+R+PL I+GF++LL ++ Sbjct: 126 VITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S + +++Q++E + +++ +L L+ DILDL+ ++AG ++ +S + +N ++++++Q Sbjct: 185 --STDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMSDLEQQF 242 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ E ++++ + + DR RL Q+ S ++NA+ F+ +GS + + Sbjct: 243 RMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPYEE 302 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + F VK+ G+ IP++ VF RFV + ++ G GLGLSI ++ + GG + + S Sbjct: 303 GLY-FYVKDTGTGIPQEKLPHVFERFVK--LKQEKNGTGLGLSICQTIVRKLGGEIGVES 359 Query: 777 SDEGVTTINCRIP 789 + +T +P Sbjct: 360 EEGAGSTFWFTLP 372 >gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 565 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 6/247 (2%) Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 D +R+ A L + + R AD +K++F+ +S+ELR+PL +IIGFT +L G LN + Sbjct: 314 DRIRSRTAELADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPLNEE 373 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + + + S+ LL L+ND+LD++ ++AG + L T L + + +A +N Sbjct: 374 QKKQMGMVQTSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKN 433 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I +KV +G D++RL Q+ +L+NA+ F+ GS V + D G ++ SV + Sbjct: 434 EIDLKVEIGKDVGDMTTDQRRLEQVVLNLLNNAVKFTETGS-VSINCRTDTGQYVISVAD 492 Query: 726 NGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I PED+ + +F F V + G GLGLSI + + + GG + + S + Sbjct: 493 TGIGIQPEDVAE-LFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGS 551 Query: 783 TINCRIP 789 T R+P Sbjct: 552 TFTVRLP 558 >gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 605 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD + E AL A +AD K F+ +S+ELR+PL IIGF+D++ L+ Sbjct: 321 DVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMIVQEATLPLD 380 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y + I+ S LL++VN ILD++ +++G ++ ++L +A K Sbjct: 381 ATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKA 440 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +N+I + L V D + QI ++SNA+ F+ +G V + A + + Sbjct: 441 RDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLR 500 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V +NG I ++ K + + F QRR G GLGLSIV+S + LHGG + + S E Sbjct: 501 VVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEE 560 Query: 781 VTTINCRIP 789 TT+ +P Sbjct: 561 GTTVTVMLP 569 >gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] Length = 491 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 21/372 (5%) Query: 418 NLTVQVD---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474 L VQ D LE+K+ E +D + +G+ + P G I ++N L+ + + L Sbjct: 115 QLKVQRDSKSLESKFR-------ELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDEL 167 Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534 I ++ R ++ F+ T L G + ++ +E S+ PL Sbjct: 168 R-ARPIEDLLPQRFRSAHKGHRSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLK 226 Query: 535 NAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 +T M +V++ E+AL EKN L A+ K+ F+ +S+ELR+PL +IGFT Sbjct: 227 TEETPVVMSAIRDVSERRGFEQALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFT 286 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L G LN +Q++ +E + ++ LL L+ND+L+LA ++AG ++LN+ I L+ Sbjct: 287 GTLLMKLPGELNPEQTRQLEIVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALV 346 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---V 708 E+ S+ + + + + + F DR+ L QI ++ NA+ F+ GS + Sbjct: 347 GEIAASLRPQALSKGLELILATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGSVRIDL 406 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFI 765 +L+ A SV + G I E+ S+F FV H + +GV GLGL + Sbjct: 407 VLEEAGKKRRLALSVSDTGPGIGEEELSSLFEAFV-QGHASRMKGVEGTGLGLHLSRKLA 465 Query: 766 NLHGGHVSISSS 777 L GG +S +S+ Sbjct: 466 VLLGGELSCTST 477 >gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 655 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 13/253 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F ++TD AE L + + +A++ K+ FV ++S+E+R+PL +IGF +LL T+ Sbjct: 241 VVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMTT- 299 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+S Q +YV+ +S+ LL ++NDILD++ ++AG + LN + L ++ + + Sbjct: 300 --NLDSDQKEYVKNAISSAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLGVL 357 Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK-----A 712 + E NI++ + KL + V D RL QI +L NA+ F+ KGS VILK A Sbjct: 358 QWRAKEKNIQLDFEVNPKLPEWIVVDATRLRQILINLLGNAVKFTEKGS-VILKIDSEIA 416 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + FS+K+ G IPE ++F F RR G GLGL I +S ++L GG Sbjct: 417 ENEKIKLNFSIKDTGIGIPESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMGG 476 Query: 771 HVSISSSDEGVTT 783 + SS+EG T Sbjct: 477 QIDF-SSEEGKGT 488 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 180/374 (48%), Gaps = 26/374 (6%) Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIR 481 +L +YN+++K Q E ++G+ V G + N F +W N + G I Sbjct: 486 NLLKRYNSVLKAQSEAA---TDGILVVNERGIVSNFNRRFCKIWGLSTNLMDVGRPEKIW 542 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQT- 538 N+A+ +D F + +DE ++ + L+ E + IP+ P ++ Sbjct: 543 NVASK-----QVADSEAFFERAMKISEDETETFKDVLDFEDGRTFERTSIPISSPLGESY 597 Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + F VT+ R+E L +A+ K+ F+ ++S+E+R+P+ IIG T LL Sbjct: 598 GRVWFFHEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSE 657 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +L ++Q YV+ I ASS LL ++NDILD + +++G +++ L D + E Sbjct: 658 T---TLENEQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAID 714 Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711 ++A + E + + + ++ GS + D RL Q+ ++ NA+ F++KG V+ Sbjct: 715 TLAIQATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVRVDPFH 774 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D+ F V + G IP D +F F R+ G GLGL+I ++ + L G Sbjct: 775 IKDDDVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMG 834 Query: 770 GHVSISSSD-EGVT 782 G + + S D EG T Sbjct: 835 GSMWVESEDGEGST 848 >gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 123/495 (24%), Positives = 215/495 (43%), Gaps = 62/495 (12%) Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS-----NDELL--EFLRSANK 364 L N+ + + D + +Q NR +EL ++ AF+A P+ N +L EF+RS + Sbjct: 334 LENMDQGLMMVDADDRVQVCNRRALELLDLPAAFMAQKPTFTAVRNYQLAQNEFVRSDDA 393 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ-- 422 ++ W + + H PNG L + GG + + ++T + Sbjct: 394 ------FRAW---VARAGLEPKEHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHG 444 Query: 423 -----VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-NRL 474 + E +Y L D++S+ + + DGR +PA ++ + EE +R+ Sbjct: 445 AEQARRESEARYRLLA-------DNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRI 497 Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVL 526 + + D +FA TS ER + L +++V Sbjct: 498 G-----------MREWLHPEDLGRVFA-TTTSLSPERPTASVVYRLRHKAGHYVWAEAVF 545 Query: 527 EYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 + + T++T + +VT+ VR ER L + A +K F+ ++S+ELR+PLT Sbjct: 546 QR--VEDAGEVTIITAIRDVTERVRQERRLEQAKVAAEAGARVKAEFLANMSHELRTPLT 603 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++G DLL SL++ Q + + LL +VNDILD + ++AG M + Sbjct: 604 GMLGVHDLLAGDT--SLSAAQRHLIGLAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPF 661 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704 L L+ ++ +A +R+ +G + +V D RL QI + SNA+ F+ + Sbjct: 662 SLRALVESCRELVAESAKGKPLRLVAEIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQ 721 Query: 705 GSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 G + +++A G V + G IP D +F RF + Q G GLGL I Sbjct: 722 GEIALRVRSAAGTGRVRVEVTDTGIGIPADKLPLLFERFSQADTSTTRQYGGTGLGLVIC 781 Query: 762 ESFINLHGGHVSISS 776 + + L GG + + S Sbjct: 782 KRLVELMGGAIGVES 796 >gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 892 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 154/287 (53%), Gaps = 9/287 (3%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 ER L G E S VL+ S++P+ N + +F+++++ + E L + A A+ Sbjct: 287 ERMLLNGKGE--SFPVLK-SVVPVKIGENEYLIESFIDLSERKKTEEELLQAKLAAESAN 343 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 K+ F+ ++S+ELR+PLT IIGF+D++ G + + +++ I+ S LL L+N+ Sbjct: 344 RAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFSEQNKKFLNNIANSGKHLLTLINN 403 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDL+ ++AG M+L + ++++ N+ + + + +I +K D ++ + ADR R Sbjct: 404 ILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDISMKYNVDSEILVY-ADRVR 462 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 QI ++SNA+ F+ +VI+ A + SV + G I E+ K +F F + Sbjct: 463 FKQIIYNLVSNAIKFTPDRGSVIVSALKTEDSVRISVSDTGIGISEENQKLLFQPFRQID 522 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + G GLGL++V+ F+NLHGG V S +T +P K Sbjct: 523 ASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEFELPLK 569 >gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1039 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 654 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L++DILDL+ ++AG ++ YS I LN L +++ ++ K+ Sbjct: 711 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 770 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++++ + + ++ RL Q+ +++NA+ F+S+GS R + F V Sbjct: 771 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 829 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D +S+F RFV Q G GLGLSI + + GGH+ + S +T Sbjct: 830 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEQGKGSTF 887 Query: 785 NCRIPSK 791 +P K Sbjct: 888 WFSLPYK 894 >gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 957 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 170/363 (46%), Gaps = 18/363 (4%) Query: 440 IDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D+L GVAV PD R + N F + T ++ A + + G Sbjct: 451 LDNLPVGVAVNTVSPDVRFEYMNELFPRFYGTTRESITAPEGFWEAAYPEPEFRGKIRG- 509 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFV-NVTDSVRAERA 554 + A S ER + D + IPLP M++ V +VT+ +AE+A Sbjct: 510 -MVTAGCASGSQERMCWADVPIMRQDETRFVTARNIPLPGTNLMISTVWDVTERKQAEQA 568 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +A A + KN F+ ++S+ELR+PL ++ LL+ + LN +Q++YV Sbjct: 569 MARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMMQLLEMTP---LNGEQTEYVHLAR 625 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS L L++D+LD++ ++AG +++ + +LL V + T + +++ +D Sbjct: 626 KSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSVSELFNTSAQSKGVSLELSTD 685 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGS 728 + + D RL Q+ ++ NA+ F+ +G T + + +FSV + G Sbjct: 686 PSVPPRLKGDAARLRQVLFNLVGNALKFTDQGFVRVELTALPPRGLEQCRILFSVMDTGI 745 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + +F F V A+ + +G GLGL+IV + L GGH+++ S T ++ Sbjct: 746 GIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVRRLVELMGGHITLDSIFGEGTEVHV 805 Query: 787 RIP 789 +P Sbjct: 806 ALP 808 >gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1391 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 183/358 (51%), Gaps = 38/358 (10%) Query: 453 DGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT--SFDD 509 DG IKLS S LW+T ++ +++++ A + Y+ + +G II+ D Sbjct: 800 DGLIKLSEIKITSPLWQTHQS-FEESDNLKSMLAIATFYHGQPNG------IISLHQCDH 852 Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK----- 564 R +ELL ++V I + +AQ + + + LT KN L+K Sbjct: 853 NRVWTLDEIELL-EAVARQLGIAIAHAQLL------SQEKEQRQELTYKNIKLKKMTQEA 905 Query: 565 --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A+ K+ F+ ++S+E+R+P+ ++GFTDLL+++ + K + Y++ I++S LL Sbjct: 906 KAANRAKSEFLANMSHEIRTPMNAVLGFTDLLQST---ITDPKATSYIKAIASSGRTLLA 962 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681 L+NDILDL+ ++AG ++L+Y + + ++NE++ K E N+ ++V D KL S + Sbjct: 963 LINDILDLSKIEAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIM 1022 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKNNGSSIPED 733 D RL QI I+ N++ F+ GS I + ++ D ++ + G I + Sbjct: 1023 TDEVRLRQILFNIVGNSIKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISRE 1082 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+ F + + R+ G GLGL+I E ++L GG + + S + +T +P Sbjct: 1083 DQHKIFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140 >gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 761 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 117/421 (27%), Positives = 193/421 (45%), Gaps = 35/421 (8%) Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 VI +++ R I + ++T Q L +Y + + I+ SE ++ + R+ + N Sbjct: 341 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 400 Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511 F+ + ++ L PGT I N AA R ++DG DER Sbjct: 401 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGSGYSRTTEVQLADERWLQI 460 Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 S+ + L+ S+ L +I L ++ L S Sbjct: 461 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANA 520 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611 EK A A++ K+ F+ ++S+ELR+PL I+GF+++L+ G L S K +Y Sbjct: 521 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSAKYDEYAR 579 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 I S LLN+++DILD++ ++AG +KL+ I L L+ E + A E NI I + Sbjct: 580 DIHDSGKHLLNVISDILDMSKIEAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNILIDQ 639 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 IS G + ADR+ + Q+ +LSNA+ F+ G + ++ R +G ++ + G I Sbjct: 640 RISSGL--TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGI 697 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + F V + + + G GLGL+I S LHGG + I S + T I+ RI Sbjct: 698 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 757 Query: 789 P 789 P Sbjct: 758 P 758 >gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] Length = 883 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 3/242 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R R + E ++ L ++E K+ F+ ++S+ELR+PL IIGF+DL+ + G+L + Sbjct: 641 LRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTLPPRIQD 700 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YV+ I AS LL +VND+LDL+ ++AG M+L+ ++ L E + + + Sbjct: 701 YVQSIHASGEHLLRMVNDVLDLSRIEAGRMELSPESLDAGILAAECVGMLLPRAVRGEVL 760 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNG 727 ++V ++ L AD RL QI I+ NA+ F+ G V ++A A G +F+V++ G Sbjct: 761 LEVQAESPL-PLTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDTG 819 Query: 728 SSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + + + F A R G GLGL I +S ++LH G+++I ++ TT+ Sbjct: 820 PGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVTI 879 Query: 787 RI 788 I Sbjct: 880 EI 881 >gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 534 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 8/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R + E N L KA+ +KN F+ + S+ELR+PLT II FT+LL + G LN+ Q Y+ Sbjct: 285 KRQMAEINLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNNMQRDYIN 344 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRI 669 I+ SS LLN +N++LDLA ++AG +++ + ++DL + V K K+ + + I Sbjct: 345 EINESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVII 404 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNG 727 V + + D +++Q+ +LSNA F+ + + L+A ++ I SV +NG Sbjct: 405 DV--EDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNG 462 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I + + +F +F V+N +G GLGL++V+ + +HGG V + S +T Sbjct: 463 VGISSENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFY 522 Query: 786 CRIP 789 IP Sbjct: 523 FSIP 526 >gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 1045 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + +++ +K++F+ ++S+E+R+PL IIGF+++L T++ ++ +Y+ Sbjct: 669 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 725 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +++T+LL L++DILDL+ ++AG + +YS + LND+L+E++ + + + I++ Sbjct: 726 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIA 785 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 ++ RL+Q+ + +L+NA F+S+GS + + F VK+ G IP Sbjct: 786 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 844 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D S+F RFV Q G GLGLSI ++ + GG + + S + +T IP Sbjct: 845 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 516 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 11/254 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNI 587 L NA TML + D + AE A +EA R+A+ K+ F+ +S+ELR+PL I Sbjct: 222 LKNANTMLEYRAEKDHLIAELETANAMSDEARRRAEAANVAKSRFLATMSHELRTPLNAI 281 Query: 588 IGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +GF++++K LG + N Y I S LLNL+N+ILDL+ ++AG +L ++ Sbjct: 282 LGFSEIMKDEVLGPMKNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAGRHELQEESLY 341 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L ++++E + + + NI + + + AD + L Q+ ++SNA+ F+ G Sbjct: 342 LEEVVDECGSMMTVRANAKNIMLHHTLEPDMPRVWADERALRQVVLNLISNAVKFTPVGG 401 Query: 707 TVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762 V +K R D+G ++ S+ + G IPED +V F +H + G GLGLSIV+ Sbjct: 402 EVHIKVGRTSDDGQYV-SITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPGTGLGLSIVQ 460 Query: 763 SFINLHGGHVSISS 776 + + +H G I S Sbjct: 461 ALVGMHDGKFVIKS 474 >gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 1045 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + +++ +K++F+ ++S+E+R+PL IIGF+++L T++ ++ +Y+ Sbjct: 669 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 725 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +++T+LL L++DILDL+ ++AG + +YS + LND+L+E++ + + + I++ Sbjct: 726 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIA 785 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 ++ RL+Q+ + +L+NA F+S+GS + + F VK+ G IP Sbjct: 786 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 844 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D S+F RFV Q G GLGLSI ++ + GG + + S + +T IP Sbjct: 845 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900 >gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 599 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 141/254 (55%), Gaps = 3/254 (1%) Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 V+E+S P T T +++TD AE A+ + +A+ K+ F+ ++S+ELR+PL Sbjct: 328 VVEWSRDGKPKRMTG-THIDITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPL 386 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 +IIG++ +L + G+L+ K+ +Y I S LL L+N ILD++ V+AG M+ Sbjct: 387 NSIIGYSQILNQNPSGNLDEKELKYSHNILNSGEHLLELINSILDISKVEAGKMEYEPER 446 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L + ++++ + + +I I+ I++ + DR + QI +LSNA+ F+ + Sbjct: 447 VNLPETIDDIIGLVKPLAMKKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPE 506 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 V + + D+G SV + G IP + + +F+ F V+++ + G GLGL++V+ Sbjct: 507 KGEVKIYLSTDDGTAQISVADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVK 566 Query: 763 SFINLHGGHVSISS 776 ++ +H G + + S Sbjct: 567 KYVEMHDGEIWVES 580 >gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1170 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 3/242 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L ++ + L++A K+ F+ ++S+ELR+PL + + LL + G+L+ Q Q+ Sbjct: 474 AQLMLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPDGNLSDDQVQFA 533 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ LL L+NDILD++ V+AG ++++ +L+ L++ +K + E + Sbjct: 534 RSIYSAGNDLLTLINDILDISKVEAGKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFS 593 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V ++D + DRQRL QI +L+NA F+ KGS + RD G F+V++ G Sbjct: 594 VELADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIG 653 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + ++F F RR G GLGLSI NL GG + + S+ +T Sbjct: 654 IAPEQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLV 713 Query: 788 IP 789 +P Sbjct: 714 LP 715 >gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093] gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093] Length = 379 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L KN L +A+ ++ F+ +S+ELR+PLT++IG+ +L +G LN KQ Y Sbjct: 122 RYQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPLNDKQRAY 181 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S L+ L++D+LDL+ ++AG + L + + +LL + + + + Sbjct: 182 AETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKGLSV 241 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + + D RL Q+ +LSNA+ F+ G V + A + + V+++G Sbjct: 242 TLQPPPE-AALYGDPARLAQVLGALLSNAVKFTPLGGRVWVSAELRESEVVLMVRDDGIG 300 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + + VF+ F V + Q RG GLGL++ + LHGG + ++S Sbjct: 301 IAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVAS 349 >gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM 17393] gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM 17393] Length = 580 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 9/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++TD ER L E +++ IK++F+ ++S+E+R+PL I+GF+ +L Sbjct: 323 LYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED- 381 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++++Y+ IS ++ ILL L+NDILDL+ ++AG ++ Y+ I +N +L+E++Q Sbjct: 382 --VSEEERTEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQ-- 437 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 A +M + N + + + L + D++R+ Q+ + +SNAM F++ GS + Sbjct: 438 AARMRQTNANVAICAVTPLEGLLLYTDQRRVTQVLNNFISNAMKFTNTGSITFGYEEPKD 497 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G F V + G+ IP + +FNRFV ++G GLGL+I ++ + G + ++S Sbjct: 498 GYIRFFVTDTGTGIPPEKVADIFNRFVK--LDSFKQGTGLGLAISQNIVKELKGEIGVAS 555 >gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1524 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 18/353 (5%) Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYY 491 +K Q I+ SEG+A+ P G N A L+ TE N L + Y Sbjct: 1004 LKRQLTAIEAASEGIAITSPMGDYLYLNKAHLELFGYTEANEL--------LNRNWKSLY 1055 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDS 548 + +G + +I ++ S L + D + E+S+ + + + ++T+ Sbjct: 1056 HPEEGDRIDREVIAKLMEKGYSRGEALAIRKDGSTFLEEFSLTLTNSGEFVCVCRDITER 1115 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 RAE L N L +A +K+ F+ ++S+ELR+PL +I+G +++L+ G LN++Q + Sbjct: 1116 KRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVLNAEQLR 1175 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I S LL L+N+ILDL+ +++G M+L S + L L + + + NI+ Sbjct: 1176 SLSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQ 1235 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726 ++ I+ D R+ Q+ +LSNA+ F+ +G+ ++LK + N SV + Sbjct: 1236 LQFIATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDT 1295 Query: 727 GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I PED + +F FV RR G GLGL++V +H G VS+ S Sbjct: 1296 GIGIAPEDQVR-LFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDS 1347 >gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 364 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ E+ K++ +K+SF+ ++S+E+R PL I+GF+ LL + G L + +Y+ Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I ++ +LL +VND+LDLA +++G M ++ L L+ E S K+ + + Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L SF+ +DR RL Q+ ++NA+ ++S GS ++ A +N + + SV + G + Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ VF+RF R Q++G+GLGLSI ++ I GG + +SS + C +P Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356 >gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 579 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++ + ++ + AD+ R++Q+ S L+NA+ F++KGS + + D F V Sbjct: 442 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S + GG + + S + Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 554 >gi|2951933|gb|AAC06271.1| hybrid histidine kinase homolog [Pseudomonas fluorescens] Length = 983 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 18/281 (6%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 V +YS+ PL + + F+ N+T + E+ + KN E +RK DE K+ F Sbjct: 129 VTDYSLTPLRDNHGEVAFLLAEGRNITSKKKYEQEIARKNSELEKLVEQIRKLDEQKSRF 188 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 ++S+ELR+PL+ I+G D + S + + + I ++ LL VN++LDLA Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVSS--EFSERHDTNLASIRRNAVTLLRHVNELLDLAK 246 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 VDAG ++L Y I + L+ ++ + IR V+S G + AD +R+ + Sbjct: 247 VDAGKLQLAYERIDIKGLVEDIAAHFEAHAKQRRIRCAVLSPGPI-LVEADPERIGHVVF 305 Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749 +++NA + + G + + G+ + +V ++G IP +M + +F RF H Sbjct: 306 NLMANAFNATPDGGRISCRVEIGRGNRCLLTVSDSGPGIPPEMRQRIFERFQQGLEDHGQ 365 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 R G GLGL+IV+ FI LHGG V++ + IP+ Sbjct: 366 ARAGSGLGLAIVKEFIELHGGTVTVGEAPGSGAIFQVEIPA 406 Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 DNGD V++NG +P + +F F + + +G+G+GL+I + + HGG +++ Sbjct: 901 DNGDLQLEVEDNGCGVPALQAERIFEPFYTT----KSQGMGMGLAICRTILEAHGGQLNL 956 >gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 562 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 134/244 (54%), Gaps = 7/244 (2%) Query: 552 ERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + ALT+ A+E K+ F+ VS+ELR+PL IIGF+D++K G L ++ ++ Sbjct: 281 QAALTQARHDREAAEEDARAKSQFLASVSHELRTPLNAIIGFSDVMKARLFGPLPARYAE 340 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I S L+ L+ D+LD++ ++A +L T + +++N + + + E I Sbjct: 341 YADLIHESGQHLMELIGDVLDMSKIEADRYELVRETFDIGEVVNLSAKMMRLQAEEAGIN 400 Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +K+ DG L DR+ L QI +LSNA+ F+ KG +++ A G + +V ++G Sbjct: 401 LKIKRHDGPL-LVDGDRKALRQILLNLLSNAVKFTPKGGAIVVMARASGGQLVMAVGDSG 459 Query: 728 SSI-PEDMCK-SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I PE+ + + +NA ++RG GLGLS+V + LHGG ++I+S TT+ Sbjct: 460 VGIDPEETARLGQPYQQAANARDIEKRGTGLGLSLVRALSELHGGSMNIASRKGEGTTVT 519 Query: 786 CRIP 789 +P Sbjct: 520 ISLP 523 >gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1172 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 9/247 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V A+++L+ L + K+ F+ ++S+ELR+PL + + LL+ ++ G+L +Q Sbjct: 465 VSAQQSLSANAARLEQTSRYKSEFLANMSHELRTPLNSSLILARLLQENRGGNLTDEQVH 524 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S++ LLNL+NDILDL+ V+AG + + T+VL+ ++ +++ + + Sbjct: 525 YAQTIHSSNSDLLNLINDILDLSKVEAGHIVMEPETVVLDTVMRSMREMFSPIAEGKALT 584 Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + + + G G+ V D QRL+QI +LSNA+ F+ +G + + G+ F V+++G Sbjct: 585 LTITRAPGTPGTIVTDHQRLVQILRNLLSNALKFTERGEVALGISVDGAGEIRFEVRDSG 644 Query: 728 SSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 I D + +F F ++ H G G GLGLSI F L GG + + S + Sbjct: 645 IGIAADKLEMIFEAFQQADGSTSRHYG---GSGLGLSISRKFAELLGGRIDVVSEPGAGS 701 Query: 783 TINCRIP 789 R+P Sbjct: 702 VFTLRLP 708 >gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1660 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 ++ RA + E +R+ D +K+ F+ ++S+ELR+PL +IIGF+ ++ G +N Q Sbjct: 1143 ENARAYELAQKAVEEMREVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPINDTQ 1202 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Q + I S LLNL+NDILDL+ ++AG M+L++S + + DL+N + + + Sbjct: 1203 KQDLTAIYNSGQHLLNLINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKP 1262 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 I++ + L AD R+ Q+ LSNA F+ +GS + +++ + + + Sbjct: 1263 IKLITEIEDNLPIVRADATRVRQVLINFLSNAAKFTDEGSITVRARRVRSPEGKPELMVT 1322 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I E+ +F F V ++ + G GLGLSI S I +HGG + + S G Sbjct: 1323 VTDTGPGIAEEDRSKLFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVG 1382 Query: 781 V 781 V Sbjct: 1383 V 1383 >gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 364 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ E+ K++ +K+SF+ ++S+E+R PL I+GF+ LL + G L + +Y+ Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I ++ +LL +VND+LDLA +++G M ++ L L+ E S K+ + + Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L SF+ +DR RL Q+ ++NA+ ++S GS ++ A +N + + SV + G + Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ VF+RF R Q++G+GLGLSI ++ I GG + +SS + C +P Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356 >gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 289 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 4 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 63 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 64 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 123 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 124 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 183 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 184 DGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 242 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 243 GLAMVKQLTELHGGCVAVAS 262 >gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 551 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 4/249 (1%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + D R L N AL +++ +K+ F+ +S+ELR PL +IIGF+++L ++ +L Sbjct: 280 IADLDRKVDELARVNMALFESNRLKSEFLSTMSHELRDPLNSIIGFSEVLIAAE--NLTE 337 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ +Y I S L L+NDIL+LA ++AG M+L+ I + + Sbjct: 338 KQQRYAGNIMTSGQRLTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAEK 397 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 NI ++V +D + D ++ QI + +LSNA+ F+ +G V LKAA D D + +V Sbjct: 398 KNIDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAATDGTDLVLTVT 457 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +F +F +N ++ G GLGLSIV L GG V++ S + Sbjct: 458 DTGVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGRGS 517 Query: 783 TINCRIPSK 791 T RI ++ Sbjct: 518 TFTVRIAAR 526 >gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] Length = 1316 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 140/270 (51%), Gaps = 29/270 (10%) Query: 539 MLTFVNVTDS------------------VRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +LT V++TD+ + A+R +K + +A + K F+ ++S+E+ Sbjct: 891 VLTMVDITDARKLALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQQFLSNMSHEI 950 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ IIGFT+++ +KL N Q +Y+ I S L+ L+NDILDLA V+AG M Sbjct: 951 RTPMNAIIGFTNVVMKTKL---NEAQKEYINAIKVSGESLIILINDILDLAKVEAGKMVF 1007 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 +S L ++++ TKM E N + IK V D RL QI ++SNA+ Sbjct: 1008 EHSPFRLFSSVSDMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLRQIMLNLISNAV 1067 Query: 700 DFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753 F++ G + LK +D+ FSV + G IPE+ K +F+ F A R G Sbjct: 1068 KFTNAGKITVRVDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQIAPETTRLNGG 1127 Query: 754 VGLGLSIVESFINLHGGHVSISSS-DEGVT 782 GLGL+IV+ + L GG+V + S D+G T Sbjct: 1128 TGLGLAIVKQMVKLQGGNVKVKSKVDKGST 1157 >gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp. HTCC2601] Length = 855 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 114/485 (23%), Positives = 224/485 (46%), Gaps = 39/485 (8%) Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368 ++ L + A+++ + L+ N +F+ +E D+ + S +LE L + Q Sbjct: 82 WKALQTMRDGFAMYNSDALLELANPAFLAPFE-DIDSVGPGASYRHVLEMLVEEGIVDLQ 140 Query: 369 LNWKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427 + W + ++ S +T L GQ + + P GG + + ++T Sbjct: 141 GERRRHWLSRMQERWEMSPIPPETIRLWTGQFIKIQDRRMPDGGVVSLCVDIT------- 193 Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 L+++ I+ L +G ++ + R+ + N +R+L+ + PG +I Sbjct: 194 ---ELMRMWS-AIEELPDGFVIYDAEDRLLMCNAPYRNLYSDSAPAIIPGASFEDIL--- 246 Query: 488 SRYYNESDGWDLFAAIITSFDD--------ERKSLQGTLELLSDSV-LEYSIIPLPNAQT 538 Y S G +A + +D R++ Q + L D L L + Sbjct: 247 --RYGLSQGQ--YAEALGREEDWLEERLSAHRRAEQEMEQQLRDGRWLRIYERALSDGGR 302 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + +++T++ R ++ L E +A K++F+ ++S+E+R+P+ ++G +LL+ S Sbjct: 303 VGLRIDITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLRES- 361 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ +Q+ YV+ I S LL ++NDILD + ++A ++L L ++EV + Sbjct: 362 --ALSDEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLML 419 Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--D 715 E + + V D L + FV D R+ QIF+ ++ NA+ F+++G +I R + Sbjct: 420 QPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCVE 479 Query: 716 NGDFIF--SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 G+ +V++ G IP D + +F F V + Q G GLGL+I + +L GG Sbjct: 480 EGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAITKRLTDLMGGE 539 Query: 772 VSISS 776 + + S Sbjct: 540 IWVES 544 >gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A] gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1045 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L + +++ +K++F+ ++S+E+R+PL IIGF+++L + Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I +++T+LL L++DILDL+ ++AG ++ YS + LND+++E++ + Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTES 778 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N I++ ++ G + ++ RL+Q+ + +L+NA F+S+GS D + F V Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 K+ G IP D S+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894 Query: 784 INCRIP 789 IP Sbjct: 895 FWFTIP 900 >gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 1029 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + +++ +K++F+ ++S+E+R+PL IIGF+++L T++ ++ +Y+ Sbjct: 653 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 709 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +++T+LL L++DILDL+ ++AG + +YS + LND+L+E++ + + + +++ Sbjct: 710 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGVQLIA 769 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 ++ RL+Q+ + +L+NA F+S+GS + + F VK+ G IP Sbjct: 770 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 828 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D S+F RFV Q G GLGLSI ++ + GG + + S + +T IP Sbjct: 829 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 884 >gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 1045 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L + +++ +K++F+ ++S+E+R+PL IIGF+++L + Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I +++T+LL L++DILDL+ ++AG ++ YS + LND+++E++ + Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTES 778 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N I++ ++ G + ++ RL+Q+ + +L+NA F+S+GS D + F V Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 K+ G IP D S+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894 Query: 784 INCRIP 789 IP Sbjct: 895 FWFTIP 900 >gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides vulgatus ATCC 8482] gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response regulator receiver domain [Bacteroides vulgatus ATCC 8482] Length = 1045 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L + +++ +K++F+ ++S+E+R+PL IIGF+++L + Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I +++T+LL L++DILDL+ ++AG ++ +Y I LND+++E++ + Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTES 778 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N I++ ++ G + ++ RL+Q+ + +L+NA F+S+GS D + F V Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 K+ G IP D S+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894 Query: 784 INCRIP 789 IP Sbjct: 895 FWFTIP 900 >gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] Length = 1137 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL K L +A + K+ F+ ++S+ELR+PL + + LL +K +L ++Q +Y Sbjct: 442 AQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYA 501 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + T LLNL+NDILDLA ++AG + + + ++ V + + + + ++ Sbjct: 502 QTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVAKVVAGVMEPLRAQAQDKGLQFN 561 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + + +F+ +D QRL QI +LSNA+ F+++G + A DN F+V++ G Sbjct: 562 AVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTMRVFAGDNDTLCFAVRDTGIG 621 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I D+ + +F+ F R+ G GLGLSI L GG +++ S+ Sbjct: 622 IAPDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSA 671 >gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 945 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 139/256 (54%), Gaps = 8/256 (3%) Query: 537 QTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 Q L F+ ++ + + E L + ++D +K++F+ ++S+E+R+PL I+GF++LL Sbjct: 693 QVELVFLSADIDNLKKIEANLIQAKAKAEESDRLKSAFIANMSHEIRTPLNAIVGFSNLL 752 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S++ +++Y IS ++ +LL L+NDILD++ ++AG+M +T+ LN E+ Sbjct: 753 -ASEMDFSEEDKAEYTRIISVNNDLLLQLINDILDISKIEAGVMDFTENTVELNQFFQEI 811 Query: 655 KQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + K + I IK I + + + DR RL Q+ S L+NA+ F+ +G Sbjct: 812 ESVFQLKA-KTGIEIKFIPEQAEEYAIKIDRIRLNQVISNFLNNALKFTRQGHIFFGYRL 870 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 R+ D F V++ G IP+D SVF RFV + Q G GLGLSI + I+ G + Sbjct: 871 REK-DIYFYVEDTGIGIPKDQQASVFRRFVKLNNFIQ--GTGLGLSICSTIIDKFNGKIG 927 Query: 774 ISSSDEGVTTINCRIP 789 + S E +T IP Sbjct: 928 VESEPEKGSTFWFTIP 943 >gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] Length = 983 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 131/232 (56%), Gaps = 6/232 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD R E+ L ++D +K++F+ ++S+E+R+PL I+GF+ +L T+ Sbjct: 599 ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATA---EEEE 655 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++S+Y+ I ++ +LL L++D+LD+A ++A + NYS++ LN L+NE++ + ++ Sbjct: 656 EKSEYINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRITS 715 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++ +++I D + +R RL QI +L+NA+ F+ KG + F V Sbjct: 716 PDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQKGK-ITFGYKLQKEKIYFYVT 774 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + +F RF+ + Q G GLGLSI +S ++ GG + + S Sbjct: 775 DTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGGEIGVDS 824 >gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492] gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 388 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 144/253 (56%), Gaps = 8/253 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T ++T + E L E AD K+ F+ ++S+E+R+PL I+GF++LL ++ Sbjct: 126 VITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S + +++Q++E + +++ +L L+ DILDL+ ++AG ++ +S + +N ++ +++Q Sbjct: 185 --STDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMFDLEQQF 242 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ E ++++ + + DR RL Q+ S ++NA+ F+ +GS + + Sbjct: 243 RMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPYEE 302 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + F VK+ G+ IP++ VF RFV + ++ G GLGLSI ++ + GG + + S Sbjct: 303 GLY-FYVKDTGTGIPQEKLPHVFERFVK--LKQEKNGTGLGLSICQTIVRKLGGEIGVES 359 Query: 777 SDEGVTTINCRIP 789 + +T +P Sbjct: 360 EEGAGSTFWFTLP 372 >gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 364 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 134/239 (56%), Gaps = 11/239 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ E+ K++ +K+SF+ ++S+E+R PL I+GF+ LL + G L + +Y+ Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I ++ +LL +VND+LDLA +++G M ++ L L+ E S K+ + + Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L SF+ +DR RL Q+ ++NA+ ++S GS ++ A +N + + SV + G + Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ VF+RF R Q++G+GLGLSI ++ + GG + +SS + C +P Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLP 356 >gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 538 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 293 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 351 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 352 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 409 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++ + ++ + AD+ R++Q+ S L+NA+ F++KGS + D F V Sbjct: 410 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCV 469 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S + GG + + S + Sbjct: 470 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 522 >gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas fluorescens SBW25] gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase [Pseudomonas fluorescens SBW25] Length = 464 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 132/253 (52%), Gaps = 26/253 (10%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ERAL EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G ++ Q +Y+ Sbjct: 189 ERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGEMSDTQREYIG 248 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+L+NDILDL+ V+AG+M+L + L LL + K + I++K+ Sbjct: 249 DIFTSGQHLLSLINDILDLSKVEAGMMELELEAVELAGLLANSLLIVREKAALHRIQLKL 308 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-------- 720 S LG D ++ QI +L+NA+ FS GS+V L + R+ I Sbjct: 309 ESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSSVTLTVRQVPREQVGQIPGEWPVYN 368 Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 SV + G I ED +F F + ++ + G GLGL++V+ Sbjct: 369 FALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFSQIDSSLARKFEGTGLGLAMVKQLT 428 Query: 766 NLHGGHVSISSSD 778 +LHGG V+++S + Sbjct: 429 DLHGGSVAVASRE 441 >gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 517 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 147/286 (51%), Gaps = 18/286 (6%) Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---K 569 QG +L + +L +I TML + D + AE +A +E+ R+A+E K Sbjct: 211 QGFFLVLGNQLLNSAI-------TMLAYRAEKDHLIAELEQANAVSDESRRRAEEANLAK 263 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDIL 628 + F+ +S+ELR+PL I+GF++++K LG + N Y I S LLNL+N+IL Sbjct: 264 SRFLATMSHELRTPLNAILGFSEIMKDEVLGPMANPTYRSYAADIHGSGQHLLNLINEIL 323 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ ++AG +LN + L D++ + + + + +I I+ + L AD + + Sbjct: 324 DLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIRAKAKDITIRESHEDGLPRLWADERAIR 383 Query: 689 QIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN- 745 Q+ +LSNA+ F SS T+ + AA G F+ S+++NG IPED V F Sbjct: 384 QVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQFV-SIRDNGPGIPEDEIPIVLQAFGQGA 442 Query: 746 -AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 A + G GLGLSIV++ + HGG + S T +PS Sbjct: 443 IAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRLREGTEAIVTLPS 488 >gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 512 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + L Sbjct: 267 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 325 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ + ++ +LLNL++DILD++ ++AG++ L + + L EV + + K Sbjct: 326 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 383 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++ + ++ + AD+ R++Q+ S L+NA+ F++KGS + D F V Sbjct: 384 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCV 443 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP++ +FNRFV Q G GLGLSI +S + GG + + S + Sbjct: 444 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 496 >gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 185/405 (45%), Gaps = 49/405 (12%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478 TV+ DL + + I+ +SE ++ + R+ L N F+ L K ++ + PGT Sbjct: 370 TVEADLRLR---------DAIETISEAFVLWDANNRLVLCNSHFQKLHKLPDSAVIPGTS 420 Query: 479 --------HIRNIAATCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELLS- 522 + I + +S G F A DD ER++ G + Sbjct: 421 YETVIEVGKMPEIRTRLHDHSQQSPGARTFEA---QLDDGSWLHISERRTKDGGYVSVGT 477 Query: 523 ---------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 D L ++I L +Q+ L + + AE+ EK A +A++ Sbjct: 478 DITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRA-EEANQ 536 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVND 626 K+ F+ ++S+ELR+PL IIGF++++ + GSL S++ Q Y I S LL ++ND Sbjct: 537 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVIND 596 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILD++ ++AG MKL+ + L L E + ++ + + + + +G + VADR+ Sbjct: 597 ILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKRLVLDADIEGNI-PIVADRRA 655 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 QI +LSNA+ F+ +G V +++ + + + + G IP + F V Sbjct: 656 TKQIMVNLLSNAVKFTPEGGRVTMRSRVFDDKVVLIIADTGIGIPAQSLARLGRPFEQVE 715 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGL+I S LHGG + + S E T + +P Sbjct: 716 SQMTKTYHGSGLGLAIARSLTQLHGGSMRLRSRIESGTVVRVTLP 760 >gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 841 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 128/519 (24%), Positives = 233/519 (44%), Gaps = 57/519 (10%) Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340 RV+ G+A I+V V +QL E + + A+FD+ R L+ N +++ ++E Sbjct: 62 RVVQELGQATEKIEV-----VTEQLWSAMETIRD---GFAMFDEERRLELANPAYLSVFE 113 Query: 341 IDLAFLATN-PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399 L +A P D L F + + K W+ + + ++ T L NG+ Sbjct: 114 -GLDHIAPGVPYPDILATFAEEGLIDLQGEDPKGWQLRMLARWEQDPIPNTTLRLWNGRF 172 Query: 400 LHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458 + V P GG + +LTV + DL ++ ++ L +G ++ + R+ + Sbjct: 173 VKVRERHLPDGGIV----SLTVDITDLMRMWSA--------VEELPDGFVIYDAEDRLLM 220 Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------YNESDGWDLFAAIITSFDDERK 512 N +R +K + PGT +I RY Y E+ G + + ++R Sbjct: 221 CNQPYRDYYKASAPAMVPGTTFEDIL----RYGLKNGQYAEAVGRE------EEWLEDRL 270 Query: 513 SLQGTLELLSDSVLE-------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 + EL + L+ Y + L V++T ++ L E A Sbjct: 271 TKHRFAELEHEQQLDDGRWLRIYERETTDGGRVGLR-VDITQIKEDQQRLKEATIRAEAA 329 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + K++F+ ++S+E+R+P+ ++G DLL+ ++ LN +Q Y + I +S LL ++N Sbjct: 330 NRAKSAFLANMSHEIRTPMNGVVGMADLLRETE---LNDEQKLYADTIRSSGEALLVIIN 386 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684 DILD + ++A + LN L +++V + + +I + V D L + FV D Sbjct: 387 DILDYSKIEAEKLVLNPEPFDLERAIHDVVMLLQPTARDKDITLLVDYDMFLPTHFVGDP 446 Query: 685 QRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFN 740 R+ QI + ++ NA+ F+ +G + ++ D G +V++ G IP D + VF Sbjct: 447 GRVRQILTNLVGNAVKFTVQGYVLVRVVGVMEDGGSTAVHITVEDTGIGIPADKVEHVFG 506 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V + + G GLGL+I + L GG V + S Sbjct: 507 EFNQVEDERNRKFEGTGLGLAITRRLVELMGGEVWVESE 545 >gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 720 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 4/243 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T + VT E AL + +A+ +K+SF+ ++S+E+R+PL I+GF+ LL +++ G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ +Y+ I ++T+LL L++D+LDL+ ++AG M+ +Y+ + ++ L E++ + Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRL 585 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++ I I ADR RL+Q+ +++NA+ F+ +GS R++G Sbjct: 586 RNKKSGICICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779 F V + G IPE+ + +F FV Q G GLGL+I + + GG + ++S + Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 780 GVT 782 G T Sbjct: 704 GST 706 >gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1043 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 118/218 (54%), Gaps = 4/218 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ D +KN F+ VS+ELR+PLT+I G LL L K + ++ ++ L+ Sbjct: 791 REVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRKDPEKADRMLDIALKNTERLVR 850 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD+ +++G + LN + DL+++ ++ N +R++ S G A Sbjct: 851 LINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHS--TRGILYA 908 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR R+LQ + +LSNA+ FS +TV + + R G + V++ G IP + +++F RF Sbjct: 909 DRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRRGGGLLIRVRDQGRGIPSNKLQTIFERF 968 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + + G GLGL+I S + HGG + + S D Sbjct: 969 QQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSID 1006 >gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1108 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 140/249 (56%), Gaps = 7/249 (2%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E + + NE +A+ + K+ F+ ++S+ELR+PL +IIGF+D+L G L KQ Sbjct: 842 RLEDTVLKANELAAQAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLTQKQ 901 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y I+ S LL L+N+ILDL+ ++AG M+ LN + ++++ I+ + + + Sbjct: 902 EKYTANINKSGKHLLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKS 961 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725 I +++ + AD+ ++ QI +LSNA+ F+ + V + A + + D + +VK+ Sbjct: 962 IDLEISKSVDI-EINADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKD 1020 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IPED +++F+ F+ R+ G GLGL++V+ ++ HGG V + S +T Sbjct: 1021 TGIGIPEDKFETIFDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGST 1080 Query: 784 INCRIPSKE 792 IP K+ Sbjct: 1081 FMFTIPLKQ 1089 >gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 576 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL IIGF++ LK +G ++ Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDMS 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRGYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 I++K+ +D G DR++ QI +L+NA+ FS+ G V L +A Sbjct: 411 LQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAGVL 470 Query: 716 NGDF---IF-------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 GD+ +F SV + G I + +F F S G R G GL Sbjct: 471 EGDWPTHVFPVPPGDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLAELHGGSVAVAS 549 >gi|294675599|ref|YP_003576214.1| PAS/PAC sensor domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294474419|gb|ADE83807.1| PAS/PAC sensor domain protein [Rhodobacter capsulatus SB 1003] Length = 535 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/376 (23%), Positives = 172/376 (45%), Gaps = 31/376 (8%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L + L + + + ++ D L+W D+ G I WAN +Y + + + + Sbjct: 150 LSQRALEDELDLMRLTLDRAPTLIWREDETGTITWANRAYVLRSGAFAETEEAMLWPLPR 209 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDV 295 LF+ + R L L+ G+ + S+ + + F + V Sbjct: 210 LFQMDENARHTGPRRLR---------LDDGDQRAAWFDCHSFPMDKGALHFALPADST-V 259 Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355 E + D + + +L + +AIFD+ R LQ N + ++L ++ FL+ P+ Sbjct: 260 RAEKALRDFVQTLTKTFADLPIGLAIFDRARQLQLFNPALIDLTQLGTDFLSNRPTLYAF 319 Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTI 413 L+ LR A +PE ++++W+ + + +++ H +TW LP+GQT V +P G Sbjct: 320 LDRLREARMMPEPKDYRSWRLKMTELEQAAAAGFHSETWMLPSGQTYRVTGRPHPDGAVA 379 Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 ++FE+++ +V L ++ ++ E +D +SE VAVF P G + SN A+ LW E + Sbjct: 380 FLFEDISSEVSLTRRFRAELEQGQEILDMMSEAVAVFQPSGELTASNAAYDRLWGVETD- 438 Query: 474 LSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVL-E 527 T +R I + + DG DL+ ++ F++ +R ++GT+ D ++ Sbjct: 439 ----TSLRRTTILDAVRLWQGKCDGSDLW-SLARGFNNRLGQRSLIEGTVRRREDGMMIG 493 Query: 528 YSIIPLPNAQTMLTFV 543 P+ M +F+ Sbjct: 494 CRFAPMTGGAMMASFL 509 >gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 537 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 152/289 (52%), Gaps = 7/289 (2%) Query: 494 SDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-RA 551 DG L+ ++T D+ + G +++++D+ + S+I +Q + D + R Sbjct: 81 PDGSTLYIDLLTIPLTDKDGRITGLIQIVTDTT-QRSVIEQLRSQQRNELQLLKDRLQRQ 139 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L N +L K +IK+ F+ +S+E+R+PLT I+G DLL+ +G L+ +Q ++ Sbjct: 140 NVELARINASLLKTTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVGPLSDEQMGAID 199 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+L+ND LD+A V+AG M+L+ + + + D+ ++ +A + N+ + Sbjct: 200 GIKKGSQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVADLIRRANLSLIF 259 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSS 729 D + +AD +RL QI +LSNA+ F+ G V L + + G F+V + G Sbjct: 260 DIDSAVQVILADARRLRQILINLLSNAIKFTPAGGKVGLEVRGEPERGAVRFTVWDTGIG 319 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + +F F + + + + G GLGL++V + LHGG V + S Sbjct: 320 ISAEDAVRLFEPFQQIESERQKEVTGSGLGLALVAKLVRLHGGSVRVES 368 >gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 364 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ E+ K++ +K+SF+ ++S+E+R PL I+GF+ LL + G L + +Y+ Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I ++ +LL +VND+LDLA +++G M ++ L L+ E S K+ + + Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L SF+ +DR RL Q+ ++NA+ ++S GS ++ A +N + + SV + G + Sbjct: 241 YPESLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ VF+RF R Q++G+GLGLSI ++ I GG + +SS + C +P Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356 >gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 720 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 136/243 (55%), Gaps = 4/243 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T + VT E AL + +A+ +K+SF+ ++S+E+R+PL I+GF+ LL +++ G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ +Y+ I ++T+LL L++D+LDL+ ++AG M+ +Y+ I ++ L E++ + Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRL 585 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++ I I ADR RL+Q+ +++NA+ F+ +GS R++G Sbjct: 586 RNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779 F V + G IPE+ + +F FV Q G GLGL+I + + GG + ++S + Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 780 GVT 782 G T Sbjct: 704 GST 706 >gi|294335677|gb|ADE62388.1| styrene sensor kinase [Pseudomonas sp. LQ26] Length = 979 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 136/270 (50%), Gaps = 17/270 (6%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEAL-------RKADEIKNSF 572 + +YS+ PL + + + F+ N+T + E+ + KN L R DE KN F Sbjct: 129 IADYSLTPLRDDRGEVAFLLAEGRNITSKKQYEQEIARKNAELEKLVDQIRMLDEQKNRF 188 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 ++S+ELR+PL+ I+G D + S G + Q + I ++ LL VN++LDLA Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVS--GEFSDLQRTNLASIRRNAVTLLRHVNELLDLAK 246 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 VDAG ++L Y + L+ E+ +++ I V+S G + AD +++ + Sbjct: 247 VDAGKLQLAYERFDVTALVEEITAHFEAHANQHRIHCAVLSPGPV-LLEADSEKISHVIF 305 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750 +++NA + + G + + + SV + G IP DM + +F RF H Sbjct: 306 NLVANAFNATPDGGRISCRVEPVADRVLISVTDTGPGIPADMRQRIFERFQQGIEDHGQA 365 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEG 780 R G GLGL+IV+ FI LHGG V++ + G Sbjct: 366 RAGTGLGLAIVKEFIELHGGTVTVGEAPAG 395 Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 104/257 (40%), Gaps = 26/257 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++ + RAE L E L + + V +++EL PLT ++ + + G+ Sbjct: 723 DIDERKRAEHELEEARSELARVMRVTAMGELVASITHELNQPLTALVANSHACRRWLSGT 782 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL------NYSTIVLNDLLNEVK 655 + Q + + ++ D A V + K + L+ ++ EV Sbjct: 783 PPNLQEGILSMEA--------VIRDSQRAAEVALRLRKFMRRGENQQEMLCLSGVVEEVL 834 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713 + + NI + L +ADR +L Q+ ++ N++D + VI + + Sbjct: 835 DYVRESLTMQNISLLTNLPIDLPLVLADRIQLQQVVLNLILNSVDAIKSAAPVIPRLSLR 894 Query: 714 ----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 +G V++NG + + +F F + + +G+G+GL+I + + H Sbjct: 895 VSQVEISGCIQLEVEDNGCGVTAAQAERIFEPFYTT----KTQGMGMGLAICRTILEAHN 950 Query: 770 GHVSISSSDEGVTTINC 786 G +++ + +G T C Sbjct: 951 GQLNLLNPSDGKATSGC 967 >gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 175/346 (50%), Gaps = 39/346 (11%) Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES--DGWDLFAA 502 +GV +G + L NPA R ++ E ++ T I ++ + Y + D ++ + Sbjct: 266 DGVIAVNAEGEVTLINPAARRIFNIEAEKIRGKTLISSLFSHRIDMYLQRAFDKKEVISR 325 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNE 560 I + E+K +Q T IPL A L + +TD +TE Sbjct: 326 EIKYKNPEQKIIQATF------------IPLLAADKKLNGGVIVLTD-------ITE--- 363 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 LRK + ++N FV +VS+ELR+PLT+IIG+ D L S + ++++ ++++ I + L Sbjct: 364 -LRKLETVRNDFVANVSHELRTPLTSIIGYLDTLLESDIEDQDTRE-RFLQIIKEETDRL 421 Query: 621 LNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 NL+ND+L+L+ +++ I KL N+ IV ++N + Q + E N+ I D L Sbjct: 422 SNLINDLLNLSKIESQIFKLEADNFEKIV-KKVVNLLSQKAKKQKLELNLEI----DNNL 476 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 R+++ Q+ ++ NA+ ++++G V +K ++ FSV++NG IP+ + Sbjct: 477 PLVYMVREQIKQVLINLIDNAIKYTAEGGKVEVKVKQEKDKIYFSVQDNGMGIPQADQER 536 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F RF V A G G+GLSIV + I HG + + S EGV Sbjct: 537 IFERFYRVDKARSRALGGTGIGLSIVRNIIKQHGSEIQLKSR-EGV 581 >gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 607 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VTD E+AL + +AD K+ F+ +S+ELR+PL IIGF+D+ L +L Sbjct: 328 DVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDELMLA 387 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y + I+ S LL++VN ILD++ +++G ++ L +A K Sbjct: 388 PERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKA 447 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 EN I + + L V D + QI ++SNA+ F+ +G TV ++AA + + Sbjct: 448 RENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAAVEAARLVLR 507 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++NG I + K + + F QRR G GLGLSIV+S + LHGG + ++S + Sbjct: 508 VRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTSEVDR 567 Query: 781 VTTINCRIP 789 T + +P Sbjct: 568 GTIVTISLP 576 >gi|282866741|ref|ZP_06275781.1| histidine kinase [Streptomyces sp. ACTE] gi|282558440|gb|EFB64002.1| histidine kinase [Streptomyces sp. ACTE] Length = 596 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+A E K F +VS+ELR+P+ +++G LL L+ +Q + + IS Sbjct: 208 LEEKSRQLREASEAKTRFWANVSHELRTPVNSVVGLARLLLDFDEARLDEEQRRQISLIS 267 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS LL LV+++LD+A ++G ++ ++ + L L +++ + + +E+ ++I Sbjct: 268 ASGATLLALVDELLDVAKAESGRLEPTWAAVDLRAALGQLRGIL--RGYESPGAAELIVA 325 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIP 731 V+D L++I +LSNA+ F+ G+ + A+ D GD +F+V + G IP Sbjct: 326 ESDVRIVSDEIMLVRILRNLLSNALKFTPTGTVRLDVASEDGDEGGDVVFTVSDTGIGIP 385 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + +F F V H+ R G GLGL L GG ++++SS T + R+P Sbjct: 386 EDEQQQIFEEFYQVRGPHQRGRSGTGLGLPYARRLTELLGGRLTLTSSPGAGTVVTVRLP 445 Query: 790 S 790 + Sbjct: 446 A 446 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 117/208 (56%), Gaps = 4/208 (1%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +++N F+ VS+ELR+PLT+++G DLL T +LG+L K + + ++ L+ L+ND Sbjct: 273 QLENEFISLVSHELRTPLTSLMGALDLLGTGQLGNLTPKGQHVLRIATTNTERLIRLIND 332 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDL + AG + + +L+ + +++ H+ N+++ V + + +AD R Sbjct: 333 ILDLERIKAGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVV--EPIAVALIADPDR 390 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 +LQ + +LSNA+ FS V L+ + V++ G IP D +++F RF V Sbjct: 391 ILQTLTNLLSNAIKFSEPQGRVWLRGQVEGEILHLQVQDQGRGIPADKLQTIFERFQQVD 450 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHV 772 + ++ G GLGLSI S +NLHGG + Sbjct: 451 ASDSRKKGGTGLGLSICRSIVNLHGGKI 478 >gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 425 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 140 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 199 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 200 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 259 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 260 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 319 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 320 DGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 378 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 379 GLAMVKQLTELHGGCVAVAS 398 >gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 807 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L EK A A+ K+ F+ ++S+ELR+PL +IIGF+D+L G LN Sbjct: 557 DITEKKITENLLHEKQMA-EFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGELN 615 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + + IS S LLNL+N ILDL+ ++A M+L+Y L L+ ++ ++ Sbjct: 616 QKQLRAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPIAD 675 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + NI I+ D + AD R ++I ++ NA+ FS + S V + R G+ + + Sbjct: 676 KKNIEIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKI-GTRKKGELVEIT 734 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I + +F F V++ + +G GLGLS+V+ +NLHGG+V S Sbjct: 735 VEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQGK 794 Query: 781 VTTINCRIP 789 +T IP Sbjct: 795 GSTFAFAIP 803 >gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 823 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 2/233 (0%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L +AD +++ FV ++S+ELR+PL +IIGF+ LL ++ G+L + Y E I+ + Sbjct: 309 NMELLEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLVATDLSYAEKINRNGK 368 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LLNL+NDILDL+ ++AG M+L ++ L EV + + E N+ + + G++ Sbjct: 369 HLLNLINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIP 428 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F D ++L ++ +L NA+ F+ KG + ++ V ++G IP+D +++ Sbjct: 429 MFETDGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIEVNDSGIGIPQDKLETI 488 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F F V ++ + G GLGL+I S + + G +S+SS +T +P Sbjct: 489 FQPFRQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLP 541 >gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 720 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 4/243 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T + VT E AL + +A+ +K+SF+ ++S+E+R+PL I+GF+ LL +++ G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ +Y+ I ++T+LL L++D+LDL+ ++AG M+ +Y+ + ++ L E++ + Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRL 585 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++ I I ADR RL+Q+ +++NA+ F+ +GS R++G Sbjct: 586 RNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779 F V + G IPE+ + +F FV Q G GLGL+I + + GG + ++S + Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703 Query: 780 GVT 782 G T Sbjct: 704 GST 706 >gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] Length = 878 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L+KA E K+ F+ ++S+E+R+PL I+G +DLL+ S LN Q YV+ Sbjct: 482 LIDLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSDLLEES---PLNEDQKHYVDISK 538 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + LL+++NDILD++ ++AG++ L + + L+ L+N++ + K E N+ + V +S Sbjct: 539 KAGHNLLSIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLS 598 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730 + F+ D R+ Q+ S ++SN++ F++ GS V+ G+ IF V + G I Sbjct: 599 EDTHSIFMGDPTRIRQVLSNLISNSLKFTTDGSIRVEVMKNQTEMEGNLIFHVSDTGIGI 658 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 P D +F F R+ G GLGLSI + + + G +++ S Sbjct: 659 PRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVES 706 >gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 484 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 134/257 (52%), Gaps = 4/257 (1%) Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E S+ PL + +L ++T+ R ERAL +KN+ L A++ K+ F+ +S+ELR+ Sbjct: 215 IEISLSPLETEEGILVSSAIRDITERKRFERALQDKNQELATANKAKDQFLASMSHELRT 274 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL IIGFT L G LN Q + + + +S+ LL+L+ND+LD+A +DAG ++L Sbjct: 275 PLNAIIGFTGTLLMGLPGPLNDDQKKQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKP 334 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 I LN LL E+ + + + E + + + + + DR+ L QI ++SN + F+ Sbjct: 335 ENINLNQLLEEIHGTFSLQAREKALELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFT 394 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIV 761 +G + + V++ G I +++F F +R G GLGL + Sbjct: 395 HEGGVYVTLVRPNPQSVHVCVRDTGPGIDTSAQENLFQPFSRGVLSSRRTEGTGLGLYLS 454 Query: 762 ESFINLHGGHVSISSSD 778 + N GG++ + SD Sbjct: 455 QKLANQLGGNIQLQRSD 471 >gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] Length = 861 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 123/527 (23%), Positives = 233/527 (44%), Gaps = 49/527 (9%) Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340 RV + GEA + I++ V QL ++ L ++ A F R ++ N +++ +E Sbjct: 62 RVKSELGEAHVKIEM-----VEGQL---WKALQSMRDGFATFSAERMMELANPAYLAPFE 113 Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQT 399 L + S +LE + + Q ++W E + + + +T L GQ Sbjct: 114 -GLDTIGPGASYRHVLEMMVEEGIVDLQGEPRRSWHERMTARWDMDPIPSETLRLWTGQF 172 Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 + + P GG + + ++T +L ++ L + L +G ++ + R+ + Sbjct: 173 IKMQDRHLPDGGVVSLCVDIT---ELMRMWSAL--------EELPDGFVIYDAEDRMLMC 221 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--------ER 511 N +R+++K + PG +I RY E +AA + +D R Sbjct: 222 NEPYRAIYKASAPAIVPGASFEDIL----RYGLERGQ---YAAAVGREEDWLEERLSAHR 274 Query: 512 KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 + + L D L PL + + +++TD +R L E A K+ Sbjct: 275 HASHEMEQQLGDGRWLRIYERPLRDGGRVGLRIDITDVKDTQRELEEARIRAETASRAKS 334 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 SF+ ++S+E+R+P+ ++G +LL+ S L +Q YV+ I S LL ++NDILD Sbjct: 335 SFLANMSHEIRTPMNGVVGMAELLRES---PLTDEQRLYVDTIRGSGEALLVIINDILDY 391 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689 + ++A +KL+ + L ++EV + E + + D L V D R+ Q Sbjct: 392 SKIEADKLKLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMFLPQRVVGDPGRVRQ 451 Query: 690 IFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 I + ++ NA+ F+++G ++ L+ A D +V++ G +P D + +F F + Sbjct: 452 ILTNLVGNAVKFTNEGHVLVRVLGLRHAHGALDVRITVEDTGVGVPADKIEHIFGEF-NQ 510 Query: 746 AHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A + R G GLGL+I + + + G + + S + RIP Sbjct: 511 AEDDRNRPFEGTGLGLAITKRLVEMMEGEIWVKSEPGQGSCFGLRIP 557 >gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 462 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 135/233 (57%), Gaps = 5/233 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD ER L E +++ IK++F+ ++S+E+R+PL I+GF+ +L T Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATE---VSE 266 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y++ I ++ +LL L+NDILDL+ ++AG ++ Y+ + +N +++E++Q+ + ++ Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++R+ ++ D++R+ Q+F+ +SNA+ F++ GS I +N F V Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G+ I + + +FNRFV Q G GLGL+I ++ + G + + S Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSFKQ--GTGLGLAISQNIVKELKGEIGVES 437 >gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 576 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 DGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 512 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF++++K G S Q Sbjct: 242 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQ 301 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LLNL+N+ILDL+ ++AG +LN + L ++ E + + + N Sbjct: 302 EYSTDIHESGLHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMGLRARAKNQ 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 + + D L AD + + QI ILSNA+ F+ G + +K +G S+K+ Sbjct: 362 NFRELVDPSLPRLWADERAVRQIVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDT 421 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPED +V + F S A + +G GLGL IV+ ++LHGG + S T + Sbjct: 422 GPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEV 481 Query: 785 NCRIPS 790 P+ Sbjct: 482 IVTFPA 487 >gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 462 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 135/233 (57%), Gaps = 5/233 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD ER L E +++ IK++F+ ++S+E+R+PL I+GF+ +L T Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTE---VSE 266 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y++ I ++ +LL L+NDILDL+ ++AG ++ Y+ + +N +++E++Q+ + ++ Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++R+ ++ D++R+ Q+F+ +SNA+ F++ GS I +N F V Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G+ I + + +FNRFV Q G GLGL+I ++ + G + + S Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSFKQ--GTGLGLAISQNIVKELKGEIGVES 437 >gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 419 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 135/242 (55%), Gaps = 8/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + +LT +VT+ +R L + E AD++K++F+ ++S+E+R+PL I+GF+ L+ T Sbjct: 159 RMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMAT 218 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + ++ Y + IS ++ LL LVNDI DL+ +DAG++ YS NDLL E+K Sbjct: 219 A---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKG 275 Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 +++EN + + ++ + L + +++QR++Q+ + +L NAM F+ G Sbjct: 276 LFGMRLNENPL-VTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCHME 334 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F V + G IPE+ + +F+RF Q G GLGL++ + ++ GG + Sbjct: 335 GTDEVCFYVSDTGIGIPEEEQEKIFSRFTKLDREMQ--GTGLGLTLSQIIVHNLGGRCGV 392 Query: 775 SS 776 S Sbjct: 393 ES 394 >gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 576 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 DGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110] gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110] Length = 835 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 6/254 (2%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 LP ++ +VT + + L KN L + + +K+ F+ +S+EL+SPLT ++G + Sbjct: 299 LPIPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSS 358 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL+ K+G LN +Q Y + I S L+ LVND+LDL ++ G +KL++S + + ++ Sbjct: 359 LLQEDKIGQLNPRQIHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICE 418 Query: 653 EVKQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 SI K + + + + L +AD RL Q+ + +L NA+ F+ Sbjct: 419 RAYHSITEKYKSKSDQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFG 478 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 LK R F++ + G IPE+ +F +F + N Q G GLGL + + Sbjct: 479 LKVNRWEDWLAFTIWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARA 538 Query: 768 HGGHVS-ISSSDEG 780 HGG +S +S + +G Sbjct: 539 HGGDISFVSKAGQG 552 >gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 576 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 DGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 513 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF++++K G S Q Sbjct: 242 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQ 301 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LLNL+N+ILDL+ ++AG +LN + L ++ E + +A + N Sbjct: 302 EYSTDIHDSGMHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAKNQ 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 + + D L AD + + Q+ ILSNA+ F+ G + +K +G S+K+ Sbjct: 362 VFRELVDPSLPRLWADERAVRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDT 421 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPED +V + F S A + +G GLGL IV+ ++LHGG + S T + Sbjct: 422 GPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGTEV 481 Query: 785 NCRIPS 790 P+ Sbjct: 482 IVTFPA 487 >gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 576 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ L+ +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ + G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 DGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 623 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R + N L +A + K+ F+ +S+ELR+PLT+I+G ++ + LG L+++Q + + Sbjct: 223 RQMDRANAELARAAQAKDEFLAAMSHELRTPLTSILGLSETMGDGLLGPLSAQQEKAIRM 282 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + T LL L+NDILD++ V +G M L + + ++ L + I +++ + Sbjct: 283 VHENGTHLLELINDILDMSRVASGQMHLRWDQVPVDQLCEASLRLIGPSAKRKGLKVSLT 342 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSI 730 D + D +RL Q+ +L NA+ F+ +G + L +A ++G+ F + + G I Sbjct: 343 IDPQARLVRGDSRRLKQMLVNLLGNAVKFTPEGGAIGLDVQADPEHGELRFGIWDTGVGI 402 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + +F FV R R+ G GLGL++V LH G + + S + R+ Sbjct: 403 PREQFERLFQPFVQLDSRPARQYDGTGLGLALVSGMAELHQGRIQVESEVGRGSRFEIRL 462 Query: 789 P 789 P Sbjct: 463 P 463 >gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 419 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E Sbjct: 81 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 138 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ A+R L+ + E AD++K++F+ ++S Sbjct: 139 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 198 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + I+ ++ LL LVNDI DL+ +++G Sbjct: 199 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 255 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y+ NDLL E++ TK+ NN ++++ + + + ++R+R++Q+ S +L Sbjct: 256 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 313 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 NAM F+ G + + + + F V + G IP++ K +F+RF+ Q G G Sbjct: 314 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 371 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL++ ++ I GG++ + S +T + +P Sbjct: 372 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 405 >gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 576 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L ++ L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 +I++K+ ++ G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 DGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLAELHGGCVAVAS 549 >gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1000 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 13/300 (4%) Query: 500 FAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 F+ S D E+ + GTL + S++E +P TML V+VT RAL Sbjct: 540 FSGQARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQR 599 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +A A+ K F+ ++S+E+R+PL I+G LL ++ L+ +Q QYV +SS Sbjct: 600 SKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTP---LDDEQKQYVSNAISSS 656 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 L L++D+LDL+ ++AG + L + ++LL+ +K + + + + IS G Sbjct: 657 GRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGL 716 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731 + D RL QI ++ NA+ F+ KG V L +G + SV++ G IP Sbjct: 717 PQHILLDGGRLRQILFNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIP 776 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +FN F V +H ++ GVGLGLSIV + GG + I S++ T I+ +P Sbjct: 777 QGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836 >gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483] gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483] Length = 422 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E Sbjct: 84 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ A+R L+ + E AD++K++F+ ++S Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + I+ ++ LL LVNDI DL+ +++G Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y+ NDLL E++ TK+ NN ++++ + + + ++R+R++Q+ S +L Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 NAM F+ G + + + + F V + G IP++ K +F+RF+ Q G G Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL++ ++ I GG++ + S +T + +P Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408 >gi|294054561|ref|YP_003548219.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613894|gb|ADE54049.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1071 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 20/234 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KNEA +D IK +F+Q++S+E+R+P+ I+GF ++LK L + + I ++S Sbjct: 825 KNEA-ELSDRIKTAFLQNMSHEIRTPMNAIVGFLEMLKADDL--TREEHDDFSNIIRSNS 881 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE---NNIRI----- 669 LL L++DILD+A ++AG ++++ ++LNDL+ E++ + H+ + I++ Sbjct: 882 QTLLVLIDDILDMARLEAGELRIDREPVLLNDLMYELEAVFEQERHQLTKSEIKLYFDET 941 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKN 725 +ISD KL + D RL QI +L NA+ F+ KG S +L +N F+V + Sbjct: 942 YLISDFKL---MTDPTRLRQILGNLLGNALKFTDKGRIWFSYRLLDEDHENPQIEFTVGD 998 Query: 726 NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G IPE+ +F RF + G RG GLGL+IVE + GG V + S+ Sbjct: 999 TGIGIPEEHLNVIFKRFRKGDGSDTGLYRGAGLGLAIVEKLTTIMGGRVVVEST 1052 >gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1000 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 13/300 (4%) Query: 500 FAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 F+ S D E+ + GTL + S++E +P TML V+VT RAL Sbjct: 540 FSGQARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQR 599 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +A A+ K F+ ++S+E+R+PL I+G LL ++ L+ +Q QYV +SS Sbjct: 600 SKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTP---LDDEQKQYVSNAISSS 656 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 L L++D+LDL+ ++AG + L + ++LL+ +K + + + + IS G Sbjct: 657 GRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGL 716 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731 + D RL QI ++ NA+ F+ KG V L +G + SV++ G IP Sbjct: 717 PQHILLDGGRLRQILFNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIP 776 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +FN F V +H ++ GVGLGLSIV + GG + I S++ T I+ +P Sbjct: 777 QGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836 >gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 642 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 8/263 (3%) Query: 534 PNAQTMLTFV---NVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P+ FV +++D V RA T +EA A+ K F+ VS+ELR+PL I+G Sbjct: 334 PDGSFAGVFVQSRDISDQVAGRLRASTMADEA-DMANASKTRFLAAVSHELRTPLNAILG 392 Query: 590 FTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 F+D+L G N +Q +YVE I S LL LVN +LD++ +++G ++ +L+ Sbjct: 393 FSDILAREMFGKFNDERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLS 452 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +++ + + + + + LG VADR+ + QI ++ NA+ F+ G + Sbjct: 453 EVVERCDAMLRLQAEQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVI 512 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 + A G + SV + G IPE+ + F V N G GLGLS+V+ ++ Sbjct: 513 NVDAGIHEGLLVLSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVD 572 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 LHGG +I+S + T + R+P Sbjct: 573 LHGGQFAIASQEGEGTVVTIRLP 595 >gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii DSM 18315] gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii DSM 18315] Length = 519 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 148/276 (53%), Gaps = 19/276 (6%) Query: 523 DSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQ 574 D+V+E S IP+ ++ +++D R ER E ++KADE +K++F+ Sbjct: 253 DTVIEISAIPVYTNTGEIQGGLMKIEDISDKKRIERLQYE----VKKADEANRLKSAFLA 308 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+E+R+PL IIGF++LL + + ++ ++V I++++ +LL L+NDI+D+A ++ Sbjct: 309 NMSHEIRTPLNAIIGFSNLLVEA---NDPEEKKEFVHIITSNNELLLQLINDIIDMAKIE 365 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +G + YS +N L+ ++ Q + K ++++I+ + D R++QI Sbjct: 366 SGTLDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQSECIINTDSNRIMQIMIN 425 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NAM F+ +GS + + D F V++ G IP D + +F+RFV Q G Sbjct: 426 FMTNAMKFTEQGS-ITFGYKKSEKDIYFFVRDTGIGIPSDKKEQIFDRFVKLNTFAQ--G 482 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL I ++ GG + + S T R+P Sbjct: 483 TGLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLP 518 >gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1211 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA ++L EK E L + + K+ F+ ++S+ELR+PL +++ LL + L +L KQ +Y Sbjct: 509 RARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSLNNLTDKQVEY 568 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ T LL L+NDILDLA +++G M L+ I DL ++Q+ H + Sbjct: 569 SRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTFRQVAHNKELSF 628 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAAR-DNGDFIFS 722 + D KL + D +RL Q+ +L+NA F+ +G T+ AA+ DN F+ Sbjct: 629 TIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDAAQIDNPMVAFA 688 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP + K +F F R+ G GLGLSI L GG + + S Sbjct: 689 VSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLGGRIELVSKPGQ 748 Query: 781 VTTINCRIPSKE 792 +T +P ++ Sbjct: 749 GSTFTLYLPRRQ 760 >gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 422 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E Sbjct: 84 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ A+R L+ + E AD++K++F+ ++S Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + I+ ++ LL LVNDI DL+ +++G Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y+ NDLL E++ TK+ NN ++++ + + + ++R+R++Q+ S +L Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 NAM F+ G + + + + F V + G IP++ K +F+RF+ Q G G Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL++ ++ I GG++ + S +T + +P Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408 >gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 767 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 18/257 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE L A A+ K+ F+ ++S+E+R+P+ +IG LL+ + L Sbjct: 358 DITERKRAEDELLRAKAAAETANTTKSEFLANMSHEIRTPMNGVIGNAQLLRFT---DLT 414 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIA 659 +QS+Y+EYI A + L++++ND+LD++ ++AG M+L ++ L NDLL + IA Sbjct: 415 EEQSRYLEYIEADAKHLVSVINDLLDISKIEAGKMELEQTSFSLRGCINDLLKPMTPRIA 474 Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAAR 714 TK N I + D G D+ RL QI ++ NA+ F+ +GS +L+ + Sbjct: 475 TKGLIFNTEIANTVPDALTG----DQLRLKQILRNLVGNAIKFTDQGSITLRVELLEHSE 530 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + F FSV + G IP++ + +F F R+ G GLGLSI L GG++ Sbjct: 531 NKALFYFSVIDTGIGIPQEALERLFTPFTQADSSVTRKFGGTGLGLSICNRLAGLMGGNI 590 Query: 773 SISSSDEGVTTINCRIP 789 S+ SS+ + + +P Sbjct: 591 SVESSEGAGSCFHVTLP 607 >gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] Length = 356 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 135/235 (57%), Gaps = 14/235 (5%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612 TE+ EA A+ K+ F+ ++S+ELR+PL IIGF++L++ G L S ++Y EY Sbjct: 112 TERAEA---ANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGS--ARYEEYATD 166 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I++S LL ++NDILD++ ++AG L+ I L L++E + ++ + + I ++ Sbjct: 167 INSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETR 226 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+D S ADR+ + QI +LSNA+ F+ +G + ++A +G + ++++NG IP Sbjct: 227 IADAL--SLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSGALVLTIEDNGCGIP 284 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 ++ + F V N G GLGL+I S L GG + I S+ EGV TI Sbjct: 285 KEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRST-EGVGTI 338 >gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 539 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 16/279 (5%) Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHV 576 EL+ D+ +Y I N Q + +S R L + N L ++ +K+ F+ ++ Sbjct: 149 ELIEDNYRQYRI----NQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANM 204 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+P+ I GF +LL + LN +Q +Y I ++ LLNL+NDILDLA ++AG Sbjct: 205 SHELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAG 261 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695 + L L++LL V+ + I I + +G + D RL Q+ +L Sbjct: 262 KLDLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLL 321 Query: 696 SNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 NA+ F+ +G + A A D F+V+++G I +++F +F R Sbjct: 322 GNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTR 381 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 R G GLGL+I + L GG + +SS +T + I Sbjct: 382 RFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420 >gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 422 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E Sbjct: 84 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ A+R L+ + E AD++K++F+ ++S Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + I+ ++ LL LVNDI DL+ +++G Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y+ NDLL E++ TK+ NN ++++ + + + ++R+R++Q+ S +L Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 NAM F+ G + + + + F V + G IP++ K +F+RF+ Q G G Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL++ ++ I GG++ + S +T + +P Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408 >gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 417 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + H+ +E R+PLT IIGF +L+ G LN KQ QYV+ S+ LL+LVND LDL+ Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 +DA +L Y + + DL V + TK E + + + D + D++R QI Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILI 309 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRG 749 +LSN + F+ KGS + A D IFSV + G I PED + +F F +S+ Sbjct: 310 NLLSNGVKFTPKGSVTLAVKATDKA-LIFSVIDTGIGIDPEDQ-RDLFQPFKQISHPPSF 367 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +G GLGL++ LHGG + ++S+ + + +P K Sbjct: 368 AEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLK 409 >gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 581 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 16/279 (5%) Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHV 576 EL+ D+ +Y I N Q + +S R L + N L ++ +K+ F+ ++ Sbjct: 149 ELIEDNYRQYRI----NQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANM 204 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+P+ I GF +LL + LN +Q +Y I ++ LLNL+NDILDLA ++AG Sbjct: 205 SHELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAG 261 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695 + L L++LL V+ + I I + +G + D RL Q+ +L Sbjct: 262 KLDLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLL 321 Query: 696 SNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 NA+ F+ +G + A A D F+V+++G I +++F +F R Sbjct: 322 GNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTR 381 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 R G GLGL+I + L GG + +SS +T + I Sbjct: 382 RFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420 >gi|2598024|emb|CAA03998.1| styrene sensor kinase [Pseudomonas sp. Y2] Length = 982 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 18/281 (6%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 V++YS+ PL + + F+ N+T + E+ + KN E +R DE KN F Sbjct: 129 VVDYSLTPLRDNHGEVAFLLAEGRNITSKKKYEQEIARKNAELEKLVEQIRMLDEQKNRF 188 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 ++S+ELR+PL+ I+G D + S + Q + I ++ LL VN++LDLA Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVSS--EFSEHQHTNLASIRRNAVTLLRHVNELLDLAK 246 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 +DAG ++L Y I + L+ E+ + I V+S G + AD +++ + Sbjct: 247 IDAGKLQLAYELIDITGLVKEITAHFEAHAKQRRIHCAVLSPGPI-LLEADPEKISHVVF 305 Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749 +++NA + + G + G+ + +V + G +P DM + +F RF H Sbjct: 306 NLVANAFNATPDGGRISCHVEIGEGNRCLLTVSDTGPGVPPDMRQRIFERFQQGVEEHGE 365 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 R G GLGL+IV+ FI LHGG V++ + +P+ Sbjct: 366 ARAGSGLGLAIVKEFIELHGGTVTVGEAPSSGAIFQVELPA 406 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/359 (23%), Positives = 146/359 (40%), Gaps = 57/359 (15%) Query: 446 GVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPG----THIRNIAATCSRYYNESDGWDLF 500 G+AV R +NPAF R L T+E L TH + T R ++ DG Sbjct: 625 GIAVVDLQWRFVNANPAFCRMLGYTQEELLGHSVLEHTHPDDRNITDQRLHHLLDGR--- 681 Query: 501 AAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERA 554 + ++ +++ L L SV S+IP + T + V + + RAE Sbjct: 682 ---LRTYHHQKRFLHKDGHSLWTRSSV---SVIP-GSGDTPPLMIGVVEDIDAQKRAEHE 734 Query: 555 LTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 L L + + V +++EL PL ++ + + LNS E Sbjct: 735 LERARSELARVMRVTAMGELVASITHELNQPLAAMVANSHACRRW----LNSSPPNLKEG 790 Query: 613 ISASSTILLNLVNDILDLATV-----------DAGIMKLNYSTIVLNDLLNEVKQSIATK 661 I++ + V D A V + LN S +V ++L V++S+ + Sbjct: 791 IASVEAV----VRDSQRAAEVVLRLRMFMRRGETQHEPLNLSGVV-EEVLGYVRESLVMQ 845 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR--D 715 I ++ L +ADR +L Q+ ++ NA++ S + L+ R D Sbjct: 846 ----GISLETTLPTDLPMVLADRVQLQQVVLNLVLNAIEAIQAASPSVPRLTLRICRSPD 901 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 NG V++NG +P + +F F + + G+G+GL+I + + HGG +++ Sbjct: 902 NGPLRLEVEDNGCGVPSSQTERIFEPFYTT----KSHGMGMGLAICRTILEAHGGQLNL 956 >gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 676 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 11/252 (4%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E+ + E+ ALR A +++ F+ +S+EL +PLT +IG + L LG L+ Sbjct: 422 EQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ 481 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-- 662 +Q Y++ I S LL+++NDILDL+ ++AG LN + L + +S+ K Sbjct: 482 RQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALS 541 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+++ + D + F AD R+ QI +L+NA+ F+ +G V L+ + IF Sbjct: 542 EKVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRVWVEEDTSIFQ 601 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G IPE+ +F +F + +R + G GLGL++ + + LH G + + S+ Sbjct: 602 VEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGI 661 Query: 781 VTTINCRIPSKE 792 + IP +E Sbjct: 662 GSIFTVWIPYQE 673 >gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 891 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 158/602 (26%), Positives = 257/602 (42%), Gaps = 82/602 (13%) Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283 K ET F KA+ ++I +I E+ F V L +G K VL Sbjct: 291 KPVETSIDAFMKAVHPEDTERMKQIINNVILKGIHEETFYRIV--LPNGEQK------VL 342 Query: 284 NSFGEAGIAIDVSKEITVN---DQLTHTYEILHNLTVAIAIFDQNRY--LQFHNRSFVEL 338 S EA + K + V +T EI L + +NRY L HN + Sbjct: 343 RSIWEAEMDEHAGKPVQVVGMIQDVTEHREIEQRLRES-----ENRYKSLFQHNPLGICA 397 Query: 339 WEIDLAFLATNPS--------NDELL--EFLRSANKLPE---QLNWKTWKENIFSVYKSS 385 ++ L+ NPS DELL E L A+ + + + + K+ Y+S Sbjct: 398 MNMEGHILSVNPSLEKLTGYTRDELLGTEILVMASSEEQDKIKRHIEMAKQGETQTYESE 457 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445 HK+ L T I G + EN+T + + L ++ +SE Sbjct: 458 FIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSE 517 Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 G+ +G ++ NPA ++ G+ I I R+ +E I + Sbjct: 518 GIVGLNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVI-----RHADE---------IGS 563 Query: 506 SFDDERKSL-----QGTLELLSDSVL----------EYSIIPLPN----AQTMLTFVNVT 546 F DE+ S+ G ++V Y I PL + ++ FV+ T Sbjct: 564 HFPDEQASILQAIRSGASYQAEEAVFWKKDGSSFLASYRISPLMDNGERKGAVMVFVDRT 623 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + E+ + E+ +AD K+ F+ +S+ELR+P+ IIG LL ++L + +Q Sbjct: 624 N----EKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---DEEQ 676 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y++ I++SS L+ ++N+ILDL+ ++AG M L + + VL D++ V T+ E Sbjct: 677 RSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKG 736 Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI 720 I+++ D ++ G V D R+ QI ++SNA+ F+ +G I + R I Sbjct: 737 IQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERGHVNIFVERKAYSRRKKKCLI 796 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 FSV + G IP D +F F S H R G GLGLSI ++ + L GG + + S Sbjct: 797 EFSVTDTGIGIPADRQHLLFQPF-SQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDS 855 Query: 777 SD 778 + Sbjct: 856 DE 857 >gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 631 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 132/243 (54%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L+E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + +Y Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILD++ ++AG S I +N + E++QS+ ++ + + + Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D+ RL+Q+ S + NA+ F+ GS + +D F V + G Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQTGSIRMGYRLKDANTICFYVSDTGCG 569 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + E+ CK VF RFV + +G GLGLSI + I+ GG + + S + +T +P Sbjct: 570 MSEEQCKHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 Query: 790 SKE 792 ++ Sbjct: 628 YQQ 630 >gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1014 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 629 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 685 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++ YS I LN +LNE+ S+ K+ Sbjct: 686 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 745 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ K ++ RL Q+ ++SNA+ F+++G R + F V Sbjct: 746 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 804 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D KS+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 805 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 862 Query: 785 NCRIPSK 791 +P K Sbjct: 863 WFTLPYK 869 >gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1197 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 153/285 (53%), Gaps = 23/285 (8%) Query: 526 LEYSIIPL--PNAQTMLTFV---NVTDSVRAERALTEKNEALRKA-------DEIKNSFV 573 +++S++PL N + L N+T+ +AE + KN+ LRK DE+K F Sbjct: 147 IDFSLMPLFDDNGKVWLILPEGRNITEKKQAEDEIARKNDELRKLYEKIKELDELKTQFF 206 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PLT I T+ L S +SK+ Y+E I+ ++ LL VN++LD++ + Sbjct: 207 ANVSHELRTPLTLITHPTEKLLKDPTISASSKK--YLEVIARNTRGLLKHVNNLLDISKL 264 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFS 692 +AG M++ Y+ + + ++ + +NN+ VI DG D ++ ++ + Sbjct: 265 EAGKMEVQYAMVDVGRTVSLIASCFELLARDNNLDYSTVIPDGAALMAAIDSDKINRVIT 324 Query: 693 KILSNAMDFSSKGSTVILKAAR---DNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSN 745 ++SNA F+ +G + ++ R +G+ F V ++G +PE + +F+RF V Sbjct: 325 NLISNAFKFTPRGGKIRVQVDRTTMPSGELAFEVVVSDSGPGVPEHLHAIIFDRFRQVDG 384 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789 + G GLGLSIV+ F+ LH G VSISSS +G + +IP Sbjct: 385 GSTRKHGGTGLGLSIVKEFVELHKGTVSISSSKQGTGAVFTIKIP 429 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 42/258 (16%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L ++ L +A+ K+ F+ ++S+ELR+PL I+G++ +L+ + +E Sbjct: 665 KQLDQERSLLNQANTHKDEFLMNLSHELRTPLNGILGWSQVLRYEPDA---DELKHGIET 721 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + LVND+LD++ + +G ++ I +++++ +S+ N+++ V Sbjct: 722 IERCARAQNQLVNDLLDMSLIISGKFQITSEPINISEIIENALESLTFIAKTKNVKLDV- 780 Query: 673 SDGKLGSFVA--DRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFS------ 722 D K F A D RL Q+ ++SNA+ FS S+G+ V ++ +R +G ++ Sbjct: 781 -DVKQQHFCARGDSTRLQQVIWNLVSNAIKFSKDSQGA-VSVRLSRSDGSDVYGVTGAPA 838 Query: 723 -----------------VKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSI 760 V +NG I + VF+RF S H G G+GLGLSI Sbjct: 839 DHVKQMMATNKSWALIRVTDNGKGISGEFLPHVFDRFRQADCSSTRHYG---GLGLGLSI 895 Query: 761 VESFINLHGGHVSISSSD 778 V + + LHGG +S + SD Sbjct: 896 VNNIVELHGG-ISFAYSD 912 >gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 654 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 129/243 (53%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + S+Y Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 472 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 VE I ++ +LL L+NDILDL+ ++AG + I +N L E++QS+ ++ NN+ Sbjct: 473 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D+ RL+Q+ + NA+ F+ G+ + D F V + G Sbjct: 533 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 592 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C VF RFV + +G GLGLSI + ++ GG + + S + +T +P Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650 Query: 790 SKE 792 ++ Sbjct: 651 YRQ 653 >gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 442 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L +N+ L K + K+ ++ H+++ELR+PLT I+GF +L+ G LN KQ QY+ Sbjct: 198 KDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREELYGPLNEKQKQYING 257 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S LL LVND LDL+ ++A ++ TI + D+ + +K E I + +I Sbjct: 258 IAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINL-II 316 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 G+ F D++R+ QI +LSNA+ F+ KGS V L D F + + G I Sbjct: 317 EIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVKSDREMLTFCIIDTGIGIK 375 Query: 732 EDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +D K +F F +H ++ +G GLGL++ LHGG ++++S + IP Sbjct: 376 QDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIP 435 Query: 790 SK 791 K Sbjct: 436 IK 437 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 530 IIPLPN-AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584 I P+ N A T++ FV V + + E A L + E +A +K+ F+ ++S+E+R+PL Sbjct: 339 ISPIKNDAGTIINFVAVKEDITKELAYQQELEQAKEVAEEASRLKSEFLANMSHEIRTPL 398 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+GFTDLL + ++K+ ++ I S LL L+NDILD + ++A + L Sbjct: 399 NVILGFTDLLLDE---TEDAKKRDHLHLIKDSGKNLLELINDILDFSKIEANKLDLEIDV 455 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 LL +K + + + V D L + D+ R+ QI +LSNAM F+ Sbjct: 456 FDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEV 515 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 GS + + G FSV + G IPE+ K +F+ F +R+ G GLGLSI Sbjct: 516 GSVSLRAHYENTGIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITR 575 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 ++L GG++++ S +T +P Sbjct: 576 RLVHLMGGNITLESKAGRGSTFTIELP 602 >gi|332707381|ref|ZP_08427431.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332353872|gb|EGJ33362.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1221 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 17/266 (6%) Query: 528 YSIIPL-----PNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELR 581 YS P+ PN+Q L T R + L KN L + + +K+ F+ +S+EL+ Sbjct: 468 YSPSPISRSESPNSQLYLVLAQDTTEQRLFAQELAAKNADLVQLNRLKDEFLACISHELK 527 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +P+T I+G + LLK LG LN +QS+Y + I S L+ +VNDILDL ++ G +KL Sbjct: 528 TPITAILGLSTLLKDQALGELNQRQSRYAQLIYQSGRKLMTVVNDILDLTRMETGQLKLT 587 Query: 642 YSTI----VLNDLLNEVKQSIATKMHENNIR-----IKVISDGKLGSFVADRQRLLQIFS 692 + V + ++ + I +K E+N R + + L +AD RL Q+ + Sbjct: 588 LEPVPIRTVCDRAYDQARSEIDSKHSEDNNRDYPTKFTLEIEASLEMLIADELRLRQMLA 647 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751 + SNA+ F+ + LK G F+V + G IP D +F +F R Sbjct: 648 HLFSNALKFTDGSGEIGLKVNWWQGWIAFTVWDTGIGIPADKQHLIFQKFQQLEKPLTRS 707 Query: 752 -RGVGLGLSIVESFINLHGGHVSISS 776 G GLGL + + +LHGG VS S Sbjct: 708 FEGTGLGLVLTQHLAHLHGGDVSFIS 733 >gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 632 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 129/243 (53%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + S+Y Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 450 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 VE I ++ +LL L+NDILDL+ ++AG + I +N L E++QS+ ++ NN+ Sbjct: 451 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 510 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D+ RL+Q+ + NA+ F+ G+ + D F V + G Sbjct: 511 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 570 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C VF RFV + +G GLGLSI + ++ GG + + S + +T +P Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628 Query: 790 SKE 792 ++ Sbjct: 629 YRQ 631 >gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 419 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/332 (27%), Positives = 179/332 (53%), Gaps = 22/332 (6%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ + + Sbjct: 81 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVT 140 Query: 530 IIPLPNAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 + + + T +LT +VT+ +R L+ + E AD++K++F+ ++S+E Sbjct: 141 LCDVSVSGTYLNIHGEDYMVLTVYDVTELKNVQRLLSIEREHSISADKLKSAFIANMSHE 200 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+ L+ ++ S ++ Y + I+ ++ LL LVNDI DL+ +++G + Sbjct: 201 VRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVD 257 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSN 697 Y+ NDLL E++ TK+ NN ++++ + + + ++R+R++Q+ S +L N Sbjct: 258 FVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHN 315 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757 AM F+ G + + + + F V + G IP++ K +F+RF+ Q G GLG Sbjct: 316 AMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTGLG 373 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L++ ++ I GG++ + S +T + +P Sbjct: 374 LTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 405 >gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 828 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R + L KN L + + +K+ F+ +S+EL+SPLT ++G + LL K+G LN Sbjct: 304 DVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELN 363 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Y E I S L+ LVND+LDL ++ G +KL++ + + ++ SI K Sbjct: 364 TRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQ 423 Query: 664 ENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + L +AD RL Q+ +L NAM F+ V ++ +R Sbjct: 424 SKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWENWIA 483 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSS 777 F+V + G IPE+ +F +F + N + G GLGL + + HGG +S IS Sbjct: 484 FTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKE 543 Query: 778 DEG 780 +G Sbjct: 544 GQG 546 >gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] Length = 632 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 135/241 (56%), Gaps = 2/241 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L E E L++ D++K+ + VS+ELR+PLT+I G+ +L+ +G LNS Q + Sbjct: 391 RHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNSNQRRC 450 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E + + L L++D+LDL+ +++G +K + + + D++ +V S+ ++ E NI I Sbjct: 451 LEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEKNIEI 510 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 K + L + V D+ R+ Q+ ++ NA+ FS + + A RDN +K+ G Sbjct: 511 KCEIEENLTAKV-DKDRITQVLINLIENAIKFSPVKGVIEIHAFRDNNYAHIIIKDYGPG 569 Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP+ +F++F N + ++ G GLGL+I +S I HGG + + S T+ + + Sbjct: 570 IPKKDLDKIFDKFYQVNFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGTSFHVLL 629 Query: 789 P 789 P Sbjct: 630 P 630 >gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 992 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 663 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++ YS I LN +LNE+ S+ K+ Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 723 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ K ++ RL Q+ ++SNA+ F+++G R + F V Sbjct: 724 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 782 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D KS+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 783 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 840 Query: 785 NCRIPSK 791 +P K Sbjct: 841 WFTLPYK 847 >gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] Length = 992 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 663 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++ YS I LN +LNE+ S+ K+ Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 723 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ K ++ RL Q+ ++SNA+ F+++G R + F V Sbjct: 724 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 782 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP+D KS+F RFV Q G GLGLSI ++ + GG + + S + +T Sbjct: 783 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 840 Query: 785 NCRIPSK 791 +P K Sbjct: 841 WFTLPYK 847 >gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 442 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L +N+ L K + K+ ++ H+++ELR+PLT I+GF +L+ G LN KQ QY+ Sbjct: 198 KDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREELYGPLNEKQKQYING 257 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S LL LVND LDL+ ++A ++ TI + D+ + +K E I + +I Sbjct: 258 IAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINL-II 316 Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 G+ F D++R+ QI +LSNA+ F+ KGS V L D F + + G I Sbjct: 317 EIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVKSDREMLTFCIIDTGIGIK 375 Query: 732 EDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +D K +F F +H ++ +G GLGL++ LHGG ++++S + IP Sbjct: 376 QDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIP 435 Query: 790 SK 791 K Sbjct: 436 IK 437 >gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS278] Length = 774 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 105/405 (25%), Positives = 189/405 (46%), Gaps = 49/405 (12%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478 TV+ DL + + I+ +SE ++ + R+ L N F+ L K ++ ++PGT Sbjct: 370 TVEADLRLR---------DAIETISEAFVLWDSNNRLVLCNSHFQKLHKLPDSAVTPGTS 420 Query: 479 -----HIRNIAATCSRYYN---ESDGWDLFAAIITSFDD-------ERKSLQGTLELLS- 522 + + +R ++ ++ G F A DD ER++ G + Sbjct: 421 YETVIEVGKMPEIRTRLHDNSQQAQGGRTFEA---QLDDGSWLHISERRTKDGGYVSVGT 477 Query: 523 ---------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 D L ++I L +Q+ L + + AE+ EK A +A++ Sbjct: 478 DITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRA-EEANQ 536 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVND 626 K+ F+ ++S+ELR+PL IIGF++++ + GSL S++ Q Y I S LL ++ND Sbjct: 537 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVIND 596 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILD++ ++AG MKL+ + L L E + ++ + + ++ + +G + +ADR+ Sbjct: 597 ILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKSLVLDADIEGNI-PVIADRRA 655 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 QI +LSNA+ F+ +G V +++ + + + G IP + F V Sbjct: 656 TKQIMVNLLSNAVKFTPEGGRVTMRSRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQVE 715 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGL+I S LHGG + + S E T + +P Sbjct: 716 SQMTKTYHGSGLGLAIARSLAQLHGGSMRLRSRLEHGTVVRVTLP 760 >gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 676 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 11/252 (4%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E+ + E+ ALR A +++ F+ +S+EL +PLT +IG + L LG L+ Sbjct: 422 EQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ 481 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-- 662 +Q Y++ I S LL+++NDILDL+ ++AG LN + L + +S+ K Sbjct: 482 RQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALS 541 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+++ + D + F AD R+ QI +L+NA+ F+ +G V L+ + IF Sbjct: 542 EQVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRIWVEEDTSIFQ 601 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G IPE+ +F +F + +R + G GLGL++ + + LH G + + S+ Sbjct: 602 VEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGI 661 Query: 781 VTTINCRIPSKE 792 + IP +E Sbjct: 662 GSIFTVWIPYQE 673 >gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 851 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R + L KN L + + +K+ F+ +S+EL+SPLT ++G + LL K+G LN Sbjct: 327 DVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELN 386 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Y E I S L+ LVND+LDL ++ G +KL++ + + ++ SI K Sbjct: 387 TRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQ 446 Query: 664 ENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + L +AD RL Q+ +L NAM F+ V ++ +R Sbjct: 447 SKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWENWIA 506 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSS 777 F+V + G IPE+ +F +F + N + G GLGL + + HGG +S IS Sbjct: 507 FTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKE 566 Query: 778 DEG 780 +G Sbjct: 567 GQG 569 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 31/369 (8%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------Y 491 E ++ +G VF D + L N F + + + PGT + A RY Y Sbjct: 17 EAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGT----VFADFMRYNAMRGEY 72 Query: 492 NESDGWDLFAAIITSFDD------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545 D L A + + ER+ GT V+E PLP + T+ ++ Sbjct: 73 GPGDVEALVAERVERARNFAPHCFERERPDGT-------VVEVRGTPLPGGGFVTTYTDI 125 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 TD RAER L + + +K +F+ +S+E+R+P+ ++G LL S L Sbjct: 126 TDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGS---PLTPD 182 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++E +S+ LL ++NDILD + ++AG MKL + L+ LL E+ + + Sbjct: 183 QRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDK 242 Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFS 722 + + + I+D D RL Q+ + ++ NA+ F+ KG + D+ F Sbjct: 243 GLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFE 302 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I ++F+ FV RR G GLGLSI + + + GG + S Sbjct: 303 VADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGE 362 Query: 781 VTTINCRIP 789 TT + +P Sbjct: 363 GTTFHFTLP 371 >gi|295699600|ref|YP_003607493.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295438813|gb|ADG17982.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 1193 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +D +RA+ L E L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 472 SDLLRAQNDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRSGNLTDE 531 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKM 662 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ + L+E+ + IA Sbjct: 532 QVRYAETIHASNSDLLVLINDILDLSKVEAGQLTVEPETVSIEATLQSLDEMFRPIAATK 591 Query: 663 HENNIRIKVISD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 H ++V D G +FV D QRL QI +LSNA+ F+ G + A ++ Sbjct: 592 H-----LRVAFDKLPGTPDTFVTDGQRLTQILRNLLSNAVKFTEHGEVTLEVAKVEDNVL 646 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V+++G IP D +F+ F + Q G GLGLSI F L GG ++++S Sbjct: 647 RFDVRDSGIGIPADKLDMIFDAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 705 >gi|166365913|ref|YP_001658186.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166088286|dbj|BAG02994.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 795 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 9/269 (3%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 Y +I + +L ++T+ + + L KN L + +K+ F+ VS+E +SPLT + Sbjct: 250 YPLIEKTSGLWLLLATDITEQQQYCQELAVKNADLVHLNRLKDEFLACVSHEFKSPLTAV 309 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG ++LL+ K+G LN +QS+Y + I S L+ LVND+LDL ++ G +KL ++ + + Sbjct: 310 IGLSNLLREQKIGELNPRQSKYADLIYRSGRQLMALVNDLLDLTRLETGQLKLTFTRVKI 369 Query: 648 NDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L V I K + + R+ + + L +AD RL Q+ +L NA+ F+ Sbjct: 370 DRLCQRVYDIIVDKYPQRLDLPGSYRLDI--ESGLDYALADEARLQQMLVNLLDNAVKFT 427 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 G +K R F+V + G IPE+ +F +F + + Q G GLGL + Sbjct: 428 IDGGNFGIKVNRWENWLAFTVWDTGIGIPEESQHLIFQKFQQLESPFTRQFEGAGLGLLL 487 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 + HGG +S S D + +P Sbjct: 488 SQKLARCHGGDLSFVSKDREGSQFTLLLP 516 >gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS] gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS] Length = 612 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 20/265 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N + +A A+ K + L A + K+ F+ ++S+ELR+PL +++ LL +K G+LN Sbjct: 32 NQAEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLN 91 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ Y + I ++ + LL L+NDILDL+ V+AG M++N + L+DLL ++Q + Sbjct: 92 EKQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLAS 151 Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------- 709 E + K ++D D QRL QI + +LSNA F+S G V+ Sbjct: 152 EKGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFTSLGKIVLSIQRVTNIEDESY 211 Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 AR+N SV + G IP+D + +F F RR G GLGLSI Sbjct: 212 QLGKMEARENL-IAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQL 270 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 L GG +++ S + TT +P Sbjct: 271 ARLLGGEITLHSEEGSGTTFTLYLP 295 >gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 891 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 123/471 (26%), Positives = 207/471 (43%), Gaps = 63/471 (13%) Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396 EL D+ +A++ D++ + A K+ Y+S HK+ L Sbjct: 421 ELLGADILIMASSEEQDKIKRHMELA------------KQGETQTYESEFIHKEGERLFI 468 Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456 T I G + EN+T + + L ++ +SEG+ +G + Sbjct: 469 KMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSEGIVGLSTEGHV 528 Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQ 515 + NPA ++ + G I I R+ +E I + F DE+ S LQ Sbjct: 529 RFMNPAAVEMFGVGSAKPLHGACIDMI-----RHADE---------IGSHFPDEQSSILQ 574 Query: 516 GTLELLSDSVLE--------------YSIIPLPN----AQTMLTFVNVTDSVRAERALTE 557 S V E Y I PL + ++ FV+ T+ E+ + Sbjct: 575 AIRSGASYQVEEAVFWKKGGSSFLASYRISPLMDNGERKGAVMVFVDRTN----EKEIIR 630 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 E+ +AD K+ F+ +S+ELR+P+ IIG LL ++ L+ +Q Y++ I++SS Sbjct: 631 AKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTE---LDEEQRSYIDIITSSS 687 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+ ++N+ILDL+ ++AG M L + + VL++++ V + E I +K D ++ Sbjct: 688 GALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGIELKWHVDQEM 747 Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI-FSVKNNGSSI 730 G V D R+ Q+ ++SNA+ F+ +G I + N I FSV + G I Sbjct: 748 PGMLVGDHVRIRQVLVNLVSNAIKFTERGRVNIFVERKAYSRHKNRCLIEFSVTDTGIGI 807 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778 P D +F F S H R G GLGLSI ++ + L GG + + S + Sbjct: 808 PADRQHLLFQPF-SQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDE 857 >gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1162 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 138/242 (57%), Gaps = 8/242 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++D +AE L + EA A++ K+ F+ ++S+ELR+PL +I+GFT L+ S + Sbjct: 675 LIDISDRKQAELELRQAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLM--SYENN 732 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S + ++ I+ S LL+L+NDILDL+ +++G M LN S L +LL +++ + K Sbjct: 733 LTSSLQERLQIINRSGRHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVK 792 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716 + ++++ V + +L +FV D ++L Q+ +LSNA+ F+ +GS + A + + Sbjct: 793 VQSKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSNALKFTQQGSITLRVRAEQKEKHS 852 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F V++ G I +F FV + A +G GLGL+I + + L GG + + Sbjct: 853 CRLCFEVEDTGVGIAPTEIDKLFKVFVQAQAGNNLSQGTGLGLAISQKLVQLMGGQIQVQ 912 Query: 776 SS 777 S+ Sbjct: 913 ST 914 >gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 576 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G++ Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGNMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----AR---- 714 I++K+ ++ G DR++ QI +L+NA+ FS G V L AR Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFARTGVI 470 Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 +GD+ SV + G I + +F F S G R G GL Sbjct: 471 EGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 725 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 188/391 (48%), Gaps = 68/391 (17%) Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 + QV ET Y+ G+ L G+A+ +GR+ +NPA+ +W+ E Sbjct: 346 MAYQVAYETSYHL-----GQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQ------ 394 Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLEL---LSDSV 525 S +Y G DL ++T D ++S E+ L Sbjct: 395 ------PQRSSFYV---GIDLVEHLLTRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQPY 445 Query: 526 LEYSIIPLPNAQTMLTFVN----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 E ++ +P + V+D R R++D +K+ F+ VS+ELR Sbjct: 446 QELHVLSVPTRDSHHQLTGRLWVVSDRTRE-----------RESDRLKDEFIGIVSHELR 494 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PLT+I+G+T++L + L+S+ Q +++ +S + L +V D+LD++ ++AG++KL Sbjct: 495 TPLTSILGYTEILLNRQ--DLDSESQREFLLTVSNEADRLHKMVKDLLDVSRLEAGVVKL 552 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N + L ++ E+ + T++ ++ + I + + L ADR ++ QI +LSNA+ Sbjct: 553 NRWAVGLWQVIEELTLQLHTQLVQHKLLIDMRT--PLPPVFADRDKVKQIIVNLLSNAIK 610 Query: 701 FSSKGSTVI----------LKAARDNGDFIF-SVKNNGSSI-PEDMCKSVFNRF--VSNA 746 +S +G+ + L A G ++ +V++ G I PED + +F RF V N+ Sbjct: 611 YSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQDQGIGIEPEDQAR-LFERFHRVDNS 669 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + Q+ GVGLGL I + LHGG + + S+ Sbjct: 670 NTRQKSGVGLGLYITRLLVELHGGRIWVQST 700 >gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 627 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 3/258 (1%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL- 593 A + +VTD + E+AL E +AD K+ F+ +S+ELR+PL +IGF+D+ Sbjct: 339 EADVVAVMRDVTDRKQQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMI 398 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L +L ++ +Y + I+ S LL++VN ILD++ +++G ++ L Sbjct: 399 LHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLN 458 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +A K EN I + + L V D + QI ++SNA+ F+ +G TV + A Sbjct: 459 CCNLLALKARENGIDLVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDAM 518 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + V + G I + K + + F QRR G GLGLSIV+S + +HGG Sbjct: 519 VEGARLVLRVSDTGVGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGD 578 Query: 772 VSISSSDEGVTTINCRIP 789 + + S + TT+ +P Sbjct: 579 IEVKSEVDRGTTVTVSLP 596 >gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY] gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY] Length = 1137 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL K L +A + K+ F+ ++S+ELR+PL + + LL +K +L ++Q +Y Sbjct: 442 AQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYA 501 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + T LLNL+NDILDL+ ++AG + + + ++ V + + + + ++ Sbjct: 502 QTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVAKVVAGVMEPLRAQAQDKGLQFN 561 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + + +F+ +D QRL QI +LSNA+ F+++G + A DN F+V++ G Sbjct: 562 AVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTLRVFAGDNDTLCFAVRDTGIG 621 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I D + +F+ F R+ G GLGLSI L GG +++ S+ Sbjct: 622 IAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSA 671 >gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 456 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 137/251 (54%), Gaps = 4/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE A+ E A+ K+ F+ ++S+ELR+PL +IIGF+D+L G LN Sbjct: 201 DITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPLN 260 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y + + LL+++NDIL ++ ++ G M+L+ + +++D ++EV+ + Sbjct: 261 EYQKKYTSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILIAS 320 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E +I + D + + D + QI ++ NA+ F+ +G +V + + SV Sbjct: 321 EKDIDLTCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGKISDDLVHISV 380 Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 K++G + PED K +FN F R+ G GLGL++V+ F+ +HGG + + S Sbjct: 381 KDSGIGVSPEDQDK-LFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEVGK 439 Query: 781 VTTINCRIPSK 791 +T IP+K Sbjct: 440 GSTFTFIIPTK 450 >gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1171 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 5/252 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F+ + RA L NE L + DE+K F +VS+ELR+PLT ++ D L TS G Sbjct: 196 FLRAQEIQRANEQLRVANEQLSRLDELKTRFFSNVSHELRTPLTLMLCPIDELLTSAPGG 255 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q + VE ++ LL LVN +LD A ++A M+++Y + L+ L EV + Sbjct: 256 LTDRQRELVELARRNARRLLKLVNTLLDFARIEAARMQVSYEALDLSALTAEVVSAFRAA 315 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + +R+ V DR+ +I ++SNA F+ +G I A R GD + Sbjct: 316 VERAGLRLVVDCPPLPERVYVDREMWEKIVLNLVSNAFKFTLEGEIGI--ALRWAGDHVL 373 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G+ IP D +F+RF + AH G G+GL++V + H G V +S Sbjct: 374 LEVRDTGTGIPADELPRIFDRFHRIQGAHGRSHEGSGIGLALVRELVRFHMGEVHATSEV 433 Query: 779 EGVTTINCRIPS 790 +T RIP+ Sbjct: 434 GRGSTFTVRIPA 445 Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%) Query: 536 AQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 A L FV ++T+ R E AL + AD K+ F+ + +ELR+P+ I Sbjct: 745 AGAFLGFVGSSLDITERKRVEDALAD-------ADRRKDEFLAMLGHELRNPMAPICVAV 797 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +LL+ G Q++E I+ + L+ LV+D+LD++ + G ++L I + + Sbjct: 798 ELLRRRSHGG---PPDQHIEVIARQTRTLMRLVDDLLDVSRITRGKIELRKERIDVKAAV 854 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +S ++ +I+++ + D RL QI +L+NA ++ G + + Sbjct: 855 ARAVESTREQIEARRHQIRLVLPAAAVQVLGDDVRLEQILVNLLTNACKYTDPGGHIGVT 914 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768 + G V+++G I ++ VF F A R R G+G+GL+IV + LH Sbjct: 915 VEQRGGQVELRVRDDGIGISREVLPHVFELF-HQADRSLDRAPGGLGIGLTIVRDLVALH 973 Query: 769 GGHVSISSSDEG 780 GG + +S G Sbjct: 974 GGSIEATSPGPG 985 >gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 2153 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 23/294 (7%) Query: 512 KSLQGTLELLSDS------VLEYSIIPLPNAQTMLTFVN-------VTDSVRAERALTEK 558 + LQ L+ L+++ VLE +P P ML F + SV +T + Sbjct: 1849 EGLQQGLQALTETPKNHNRVLE---LPEPTQSIMLNFAPWVGPRNAIYGSVIVLHDITRE 1905 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 EA D K F+ VS+ELR+PLT+I G+ DL+ G LN +Q + + + ++ Sbjct: 1906 VEA----DRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPLNEEQKKSLGVVKNNAN 1961 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L++L+NDIL++ +D+ ++L + +V+ D+ +V+Q++ ++ + Sbjct: 1962 RLMDLINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIKRKRLSFTFDVAADTP 2021 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD++RL QI + SNA+ ++ V L+A + + V +NG I + + Sbjct: 2022 PVFADKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNPAGLLQVDVIDNGVGISPEQQQH 2081 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF N R + G GLGLSI +SF+ LHGG + + S +T + IP Sbjct: 2082 LFRRFYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGKGSTFSFIIP 2135 >gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium HP15] Length = 902 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 38/283 (13%) Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590 V + +R+E AL + LR A K+ F+ ++S+E+R+P+ +IG+ Sbjct: 515 VDERIRSENALRRSEDELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGY 574 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +DLL S + +Q Y++ I A S LL L+NDILDL+ ++AG M+L+YS + + L Sbjct: 575 SDLLSNS---VTDPQQRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRL 631 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++V+ + E I ++V D ++ G+ + D RL Q+ ++ NA+ F+ G + Sbjct: 632 LDDVRHIFDLRAREQGITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTV 691 Query: 710 LKAA------------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 A R I +V ++G IP D + +F+ F + R Sbjct: 692 RATAKPLKKRSAEAEQNPEAPERQYYKLIVTVSDSGIGIPPDQVERIFDAFEQQEGQNTR 751 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 R G GLGL+I + GG + + S + +P E Sbjct: 752 RYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTVTLPRVE 794 >gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 1045 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ L Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ GS + RD+ F Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLRDDNTLWFY 833 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885 >gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 847 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 9/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + + +RAER L E A+ K F+ +VS+ELR+PL +IGF++++ G L Sbjct: 583 EIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMAAEMFGPLG 642 Query: 604 SKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S ++YV Y++ AS LL ++NDILD+A ++AG M+ + + +++ + + + Sbjct: 643 S--ARYVGYVNDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVVAAAIRIVES 700 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + ADR+RLLQI +LSN++ F+ +G +V + GD + Sbjct: 701 RADAGGLVLGSHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEVT-VEVLGDMV 759 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F+V + G + +D F RR G GLGL +V +F+ LHGGH+ I S Sbjct: 760 GFTVSDTGIGMSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHGGHLDIVSR 819 Query: 778 DEGVTTINCRIPSK 791 T + R+P + Sbjct: 820 KGEGTQVTVRLPQE 833 >gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 576 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 30/279 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I SS LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714 I++K+ ++ G DR++ QI +L+NA+ FS G V L + Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGIL 470 Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 GD+ SV + G I + +F F + ++ + G GLG Sbjct: 471 GGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530 Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792 L++V+ LHGG V+++S D G V + R P+ E Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRPPATE 569 >gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 974 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 3/250 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 V + +AE +L + EA +A K+SF+ ++S+ELR+PL IIGFT L+ L Sbjct: 453 RVIERKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLP 512 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +E I ASS LL+L+N ILDLA V+AG M++ S L +L+ +++ + Sbjct: 513 VKQFENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVK 572 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +R+ D ++L QI +LSNA+ F+ GS + + D G F+V Sbjct: 573 NEGVRLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGSVTLRVRSVDEG-IEFAV 631 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP ++F F V N+ G GLGL+I L GG + + S + Sbjct: 632 MDTGIGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREGEG 691 Query: 782 TTINCRIPSK 791 +T IP + Sbjct: 692 STFTLTIPPR 701 >gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] Length = 1337 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 149/667 (22%), Positives = 289/667 (43%), Gaps = 73/667 (10%) Query: 173 GIYSELAETTLKCKKLSNHIS---VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229 G+ ++ E + L H + +F+ + D + + +D+ ++ N +++K T Sbjct: 343 GLRIDVTELKQREALLETHAAQNELFRAILDEMPVSSFVKDEDLRYVYVNRAHRKLT--- 399 Query: 230 GIVFQKAIGESR-KLFKEEIKK-RMISSSALEKN-FCETVSTLEHGNNKSYKIVRVLNSF 286 G+ + +G+ ++F ++ + R + +S + N E L + + +++ F Sbjct: 400 GLTPEDMLGKDDFRIFGDQGQALRDVDTSVMSGNGLVECEIELNATDGRPLQLIDRKVPF 459 Query: 287 GEA-------GIAIDVSK------EITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYL 328 + G IDVS+ E+ +L + IL + + + + D+N + Sbjct: 460 TDPSGQRFLLGTTIDVSERKRREEEVFEARRLAEIHRDDLESILETMHMGVIVLDKNLDV 519 Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSE 386 + N +F +W +D TN S E++E R N +P+ ++ + E S Sbjct: 520 KLINSAFYRIWNVDQDRDLTNASFKEVIELNRYNNIYDVPDN-DFDKYIETRLSEISGGF 578 Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 + +G+TL V S G + + ++T ++ L + +GE + + Sbjct: 579 AAPREFSRADGKTLIYSVRSLSEGKRMVTYFDVT-ELKQREHERDLARAEGERANEILRD 637 Query: 447 VAVFGPDG-------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW 497 A G RI+ SN AF + + + PG RY Y E+ G Sbjct: 638 AASAMAQGLLVVENNRIQFSNKAFCEILDLPQELVKPGE-------LADRYLDYCEARG- 689 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEY-----------SIIPLPNAQTMLTFVNVT 546 D S + R+ ++ T+E +E + + NA + TF ++T Sbjct: 690 DFGEGEKAS--ESREKIRRTIENGKPYAVERKSAKNRWLKVDAKVGSSNA-IIATFSDIT 746 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + + E L + AD K+ F+ ++S+E+R+P+ ++G +LL ++ L+++Q Sbjct: 747 ATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTE---LDTRQ 803 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + I S T LL ++NDILD + +DAG + L L + + +V I+++ E + Sbjct: 804 RTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKD 863 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721 I + V D L V D R+ Q+ + ++ NA+ F+ G +I A+ + D Sbjct: 864 IELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSPASEGSVDLTL 923 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V + G IP + +VF++F RR G GLGL+I + L G +S S+ Sbjct: 924 RVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAEST-P 982 Query: 780 GVTTINC 786 G ++ C Sbjct: 983 GEGSVFC 989 >gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str. 301020] Length = 576 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 I++K+ ++ G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 GD+ SV + G I + +F F S G R G GL Sbjct: 471 EGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E +I P+P L F+ ++T +AE L + EA A K++F+ +S+E+R+ Sbjct: 643 VELTITPVPQGSGFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRT 702 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ +IG T+LL + LNS Q +Y+ + S LL+++NDILD + ++AG L Sbjct: 703 PMNAVIGMTELLLDT---DLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEK 759 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 + L + L + +S+A + H ++ + D + + V DR RL QI ++ NA+ F Sbjct: 760 APFHLRENLGDTMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKF 819 Query: 702 SSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 + +G V+ +++ F V++ G IPED + +F F RR G G Sbjct: 820 TEEGEIVLDVNYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTG 879 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I + GG + ++S Sbjct: 880 LGLAIASRLIEMMGGKIWVNS 900 >gi|328544566|ref|YP_004304675.1| Sensor histidine kinase with a PAS domain [polymorphum gilvum SL003B-26A1] gi|326414308|gb|ADZ71371.1| Sensor histidine kinase with a PAS domain [Polymorphum gilvum SL003B-26A1] Length = 588 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 12/247 (4%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D++ AER+ E A R F+ + ELR+PL I+GF DLL+ S +S+ Sbjct: 331 DALAAERSAAEATSAAR------TRFLASIGQELRTPLNAILGFADLLRAGSSPSDDSRS 384 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y++ I S T LL +V D+LD++ ++AG L+ L L + +AT+ Sbjct: 385 RKYIDLIHQSGTHLLQMVEDLLDMSKIEAGRYDLSIEPFDLPQCLETCRHMLATEASGKG 444 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I I D LG+F ADR+ +QI +LSNA+ F + GS ++L A RD SV+++ Sbjct: 445 IEIVTEVDNGLGAFPADRRACMQIVLSLLSNAVKFGASGSRMVLCARRDRDRVELSVRDS 504 Query: 727 GSSIP----EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I + +S F + + G GLGLS+V++ L+GG +++ S T Sbjct: 505 GPGIAATDLPRLGQSYFR--TRDPALCEAPGTGLGLSVVKALAELYGGAMTVDSLPGTGT 562 Query: 783 TINCRIP 789 + +P Sbjct: 563 CVTVTLP 569 >gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 782 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 13/254 (5%) Query: 547 DSVRAERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 D+ R LTE N E A K +F+ ++S+ELR+PL I+GF+++++ Sbjct: 514 DAERKAVQLTEMNQNYAAEKERAETASSAKTTFLANMSHELRTPLNAILGFSEIMRQGTF 573 Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G + K +Y E I S LL L+NDILD+A ++AG + LN+ T+ L+++ E + I Sbjct: 574 GPIGCPKYGEYAEDIHQSGHYLLKLINDILDMAKIEAGRLVLNHETVDLSEIATETGKII 633 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + I + ++ DR+ QI +LSNA+ F+ G TV +K R GD Sbjct: 634 EVQADQKAICLDADVPERM-ELTVDRRATKQIVLNLLSNAVKFTDNGGTVKMK-LRTVGD 691 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + ++ +NG IP KS+ F + N +G GLGL+I S + L GG + IS Sbjct: 692 AALITIADNGMGIPRAALKSLGKPFEQIENELTRTNKGTGLGLAIARSLVALQGGRMRIS 751 Query: 776 SSDEGVTTINCRIP 789 S T + R+P Sbjct: 752 SQVGEGTIVAIRLP 765 >gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 654 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + S+Y Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 472 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILDL+ ++AG + I +N L E++QS+ ++ NN+ Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 532 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + D+ RL+Q+ + + NA+ F+ G+ + D+ F V + G Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C VF RFV + +G GLGLSI + ++ GG + + S + +T +P Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650 Query: 790 SKE 792 ++ Sbjct: 651 YRQ 653 >gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1118 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 17/252 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + + L KN L + + +K+ F+ +S+EL++PLT ++G + LL +LG LN Sbjct: 381 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELN 440 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVK---- 655 +Q++Y I S L++++NDILDL ++ G M+L S + V + L+EVK Sbjct: 441 ERQARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSEVKTLHN 500 Query: 656 -------QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 S + H + + + + L VAD RL Q+ +LSNA F+ + Sbjct: 501 QPSKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFTETSGEI 560 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 L+ R G F+V + G IPE +F +F + N Q G GLGL + + Sbjct: 561 GLRVNRWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALAR 620 Query: 767 LHGGHVSISSSD 778 LHGG VS S + Sbjct: 621 LHGGDVSFLSQE 632 >gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] Length = 775 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 135/240 (56%), Gaps = 9/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++TD ER L E +++ IK++F+ ++S+E+R+PL I+GF+ +L Sbjct: 518 LYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED- 576 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ IS ++ ILL L+NDILDL+ ++AG ++ Y+ I +N +L+E++Q Sbjct: 577 --VSEEERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQ-- 632 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 A +M + N + + + + + D++R+ Q+ + +SNAM F++ GS + Sbjct: 633 AARMRQPNANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNTGSITFGYEEPKD 692 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G F V + G+ IP + +FNRFV ++G GLGL+I ++ + G + + S Sbjct: 693 GYIRFFVTDTGTGIPPEKVADIFNRFVK--LDSFKQGTGLGLAISQNIVKELKGEIGVLS 750 >gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 389 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++T E LT E +A+ +K++ + ++++E+R+PL I+GF LL + Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S +VL+ L+ E++ + Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 K NN+ + + DR RL+QI +L NA+ F++KG+ ++NG Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F V + G IP D + +F RFV Q G+GLGLS+ + I G + + S Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 781 VTTINCRIPS 790 +T IP+ Sbjct: 374 GSTFWFTIPN 383 >gi|260684807|ref|YP_003216092.1| sensor protein [Clostridium difficile CD196] gi|260688465|ref|YP_003219599.1| sensor protein [Clostridium difficile R20291] gi|260210970|emb|CBA66243.1| sensor protein [Clostridium difficile CD196] gi|260214482|emb|CBE06962.1| sensor protein [Clostridium difficile R20291] Length = 391 Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618 +A+++A+ KN+ V ++++++R+PLT++IG+ LLK ++ ++ NS++S+Y E + Sbjct: 160 QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 217 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+N++ ++ ++ +K+N+ + L +L ++K + E R + ++ L Sbjct: 218 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 276 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + AD ++L ++F+ IL NA+ +S + +I+ A + + +N G +IPE+ ++ Sbjct: 277 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 336 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F +F + A + G GLGLSI + INLHGG +++ S DE VTT +P+ Sbjct: 337 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 389 >gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1156 Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 5/258 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L ++ RA+ L + L +A K+ F+ ++S+ELR+PL + + LL Sbjct: 442 QTQLMEAQRDEATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNSSLILAKLLAD 501 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ G+L ++Q +Y E I A+ LL L+NDILDL+ ++AG M++ + L L ++ + Sbjct: 502 NRDGNLTAEQVRYAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPVPLASLAEDLTR 561 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 E + V ++ G DRQRL Q+ +LSNA+ F+ G V L+A+ Sbjct: 562 VFQPIADEKKLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFTESGE-VALEASAA 620 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 GD I F+V++ G I E + VF F R+ G GLGLSI L GG + Sbjct: 621 PGDRIAFAVRDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIARELARLLGGDI 680 Query: 773 SISSSDEGVTTINCRIPS 790 ++S +T IP+ Sbjct: 681 HLASEPGRGSTFTVTIPT 698 >gi|255094248|ref|ZP_05323726.1| VanS [Clostridium difficile CIP 107932] Length = 296 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618 +A+++A+ KN+ V ++++++R+PLT++IG+ LLK ++ ++ NS++S+Y E + Sbjct: 65 QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 122 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+N++ ++ ++ +K+N+ + L +L ++K + E R + ++ L Sbjct: 123 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 181 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + AD ++L ++F+ IL NA+ +S + +I+ A + + +N G +IPE+ ++ Sbjct: 182 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 241 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F +F + A + G GLGLSI + INLHGG +++ S DE VTT +P+ Sbjct: 242 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 294 >gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 632 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + S+Y Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 450 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILDL+ ++AG + I +N L E++QS+ ++ NN+ Sbjct: 451 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 510 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + D+ RL+Q+ + + NA+ F+ G+ + D+ F V + G Sbjct: 511 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 570 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C VF RFV + +G GLGLSI + ++ GG + + S + +T +P Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628 Query: 790 SKE 792 ++ Sbjct: 629 YRQ 631 >gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 1167 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 3/244 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +R L ++ + L++A K+ F+ ++S+ELR+PL + + LL + G+L +Q ++ Sbjct: 468 RVQRDLEDRADELQRASRYKSEFLANMSHELRTPLNSALILAKLLGDNPQGNLTLEQVKF 527 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I +S LL L+NDILD+A V+AG +++ + L L ++ + + + N+ Sbjct: 528 AESIYSSGNDLLVLINDILDIAKVEAGKLEVVPEDVSLARLAESLESTFSPLAMQKNLSF 587 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ + G S V DRQR+ QI +LSNA+ F+ KG ++ +A +G F+V ++G Sbjct: 588 RLELQPGAPASLVTDRQRVEQILKNLLSNALKFTDKGEVALVVSATADGGAAFAVSDSGI 647 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + +F F RR G GLGLSI +L GG +++ S +T Sbjct: 648 GIDAQQHELIFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLGGTLTVQSEPGKGSTFVL 707 Query: 787 RIPS 790 ++P+ Sbjct: 708 QLPA 711 >gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 895 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 197/403 (48%), Gaps = 40/403 (9%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ T W F +++ ++ E++ L ++ T+++L G+ V K Sbjct: 346 VTTDDGEETFWSFTHDISERIRYESQIKRLNRIMDTTMENLPAGIVV-------KDIEND 398 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------------- 509 FR +++ E ++ R+I+A + N+ D + L A +D Sbjct: 399 FRYIYRNRE------SYNRDISAENAIGMNDFDYYPLEMAQQKRKEDMEIANTGKGMHWI 452 Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKAD 566 E K G L +L + I+ + ++ + ++T R L E E +D Sbjct: 453 MEGKDKNGNLLILDKQKI---IVESEDFSPIIVSIEWDITQLELMRRELMESKEKAETSD 509 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 ++K++F+ ++S+E+R+PL I+GF+ ++ S+ ++ +Y E + A++ LL L+N+ Sbjct: 510 KLKSAFLANMSHEIRTPLNAIVGFSRIISESENPE---ERKEYYEIVDANNERLLQLINE 566 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILDL+ +++GI++ Y + L+ L E+ + + + + +K S + S +D+ R Sbjct: 567 ILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCPQ-GVELKFDSPDEALSIHSDKNR 625 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 + Q+FS ++ NA F+++GS V ++ +F VK+ G I + VF RF Sbjct: 626 IFQVFSNLIGNAFKFTTQGS-VSYGYRQEAEKVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI ++ I GG +S+SS TT +P Sbjct: 685 NFAQ--GTGLGLSICKTIIERLGGEISVSSEVGTGTTFTFWLP 725 >gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343] Length = 389 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++T E LT E +A+ +K++ + ++++E+R+PL I+GF LL + Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S +VL+ L+ E++ + Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 K NN+ + + DR RL+QI +L NA+ F++KG+ ++NG Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIR 315 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F V + G IP D + +F RFV Q G+GLGLS+ + I G + + S Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 781 VTTINCRIPS 790 +T IP+ Sbjct: 374 GSTFWFTIPN 383 >gi|254976862|ref|ZP_05273334.1| VanS [Clostridium difficile QCD-66c26] gi|255316002|ref|ZP_05357585.1| VanS [Clostridium difficile QCD-76w55] gi|255518659|ref|ZP_05386335.1| VanS [Clostridium difficile QCD-97b34] gi|255651781|ref|ZP_05398683.1| VanS [Clostridium difficile QCD-37x79] gi|306521571|ref|ZP_07407918.1| sensor protein [Clostridium difficile QCD-32g58] Length = 371 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618 +A+++A+ KN+ V ++++++R+PLT++IG+ LLK ++ ++ NS++S+Y E + Sbjct: 140 QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 197 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+N++ ++ ++ +K+N+ + L +L ++K + E R + ++ L Sbjct: 198 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 256 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + AD ++L ++F+ IL NA+ +S + +I+ A + + +N G +IPE+ ++ Sbjct: 257 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 316 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F +F + A + G GLGLSI + INLHGG +++ S DE VTT +P+ Sbjct: 317 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 369 >gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 498 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 147/263 (55%), Gaps = 13/263 (4%) Query: 539 MLTFVNVTDSVRAE----RALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +L+F + D + AE ++L++K + +A+ K+ F+ +S+ELR+PL I+GF+++ Sbjct: 214 ILSFQSEKDDLIAELEVAKSLSDKTRQRAEEANLAKSRFLASMSHELRTPLNAILGFSEV 273 Query: 594 LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + +G LN++ +Y+ I S LLNL+N+ILDL+ ++AG +L+ S I L D+++ Sbjct: 274 IGLETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIMH 333 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 E + + E I I D L S AD + + Q+ +LSNA+ F+S G V +K Sbjct: 334 ECMIMLQLRAQEKYIEIFQQIDPTLSSVWADEKGMRQVILNLLSNAVKFTSIGGKVRVKV 393 Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLH 768 G +I S+K+NG I E +V + F S A + +GVGLGL IV+S + H Sbjct: 394 GWTAGGGQYI-SIKDNGPGISEGEMPTVLSSFGQGSIAIKSAEQGVGLGLPIVQSIMANH 452 Query: 769 GGHVSISSS-DEGVTTINCRIPS 790 GG I S EGV I +PS Sbjct: 453 GGQFRIKSKLQEGVEVIAI-LPS 474 >gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 973 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 126/492 (25%), Positives = 202/492 (41%), Gaps = 56/492 (11%) Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS-----NDELL--EFLRSANK 364 L N+ + + D + +Q NR +EL ++ AF+A P+ N +L EF S Sbjct: 335 LENMDQGLMMIDADDRVQVCNRRALELLDLPPAFMARKPTFTAVRNHQLAHNEFAHSDEA 394 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ-- 422 ++TW + + H PNG L + GG + + ++T + Sbjct: 395 ------FRTW---VATAGLEPREHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHG 445 Query: 423 -----VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLS 475 + E +Y L D++S+ + + DGR +P+ ++ + EE Sbjct: 446 AERARRESEARYKVLA-------DNVSDLIVLGHADGRRSYISPSVHAMLGYAVEE---- 494 Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYS 529 IR R D + +A S ER + L + Y Sbjct: 495 -AHRIR------VRDCLHPDDLNRVSAAAASLSRERPTASVVFRLKHKAGHYVWVEAAYK 547 Query: 530 IIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 I + T++T + +VT VR ER L K F+ ++S+ELR+PLT ++ Sbjct: 548 RIEDADEVTIVTAIRDVTQRVRQERHLERARVEAEAGARAKAEFLANMSHELRTPLTGML 607 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G DLL SL+ Q V + LL +VNDILD + ++AG M + L Sbjct: 608 GVHDLLAGD--ASLSDAQRHLVGLAQEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLR 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS- 706 L+ + +A + +R+ +G FV D RL QI + SNA+ F+ +G Sbjct: 666 ALVESCRALVAESAKDKPLRLVTDIEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRGEI 725 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 T+ + A G +V + G IP D +F RF RR G GLGL I + Sbjct: 726 TMRVGFAASTGRVRVAVTDTGIGIPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRL 785 Query: 765 INLHGGHVSISS 776 + L GG + + S Sbjct: 786 VELMGGTIGVES 797 >gi|4545094|gb|AAD22391.1|AF064527_1 PPH [Rhodospirillum centenum] Length = 884 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 4/243 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R R + E ++ L ++E K+ F+ ++S+ELR+PL IIGF+DL+ + G+L + Sbjct: 641 LRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTLPPRIQD 700 Query: 609 YVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 YV+ I AS LL + VND+LDL+ ++AG M+L+ ++ L E + + + Sbjct: 701 YVQSIHASGEHLLRMVVNDVLDLSRIEAGRMELSPESLDAGILAAECVGMLLPRAVRGEV 760 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNN 726 ++V ++ L AD RL QI I+ NA+ F+ G V ++A A G +F+V++ Sbjct: 761 LLEVQAESPL-PLTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDT 819 Query: 727 GSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G + + + F A R G GLGL I +S ++LH G+++I ++ TT+ Sbjct: 820 GPGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVT 879 Query: 786 CRI 788 I Sbjct: 880 IEI 882 >gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 600 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 136/243 (55%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AE+ +EK A A+ K+ F+ ++S+ELR+PL IIGF++++++ G L S K +Y Sbjct: 356 AEKYASEKTRA-EAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGELGSPKYKEY 414 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I AS T LL L+NDILD++ ++AG M L + L++++ E + ++ + + I Sbjct: 415 AGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGRAEVAKVHI 474 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 G L + AD++ + Q+ +LSNA+ F+ G ++ L+ +G F+ SV++ G Sbjct: 475 -ANEMGPLPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLR-GETSGRFVTISVEDTGI 532 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + F V + H +G GLGL++ S + LHGG + + S++ T ++ Sbjct: 533 GIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTEGVGTKVSF 592 Query: 787 RIP 789 +P Sbjct: 593 TLP 595 >gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1014 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 136/245 (55%), Gaps = 6/245 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E LT + +++ +K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 630 ITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 686 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++T+LL L++DILDL+ ++AG ++ YS + LN ++ E++ ++ K+ Sbjct: 687 EKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIKS 746 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++ + ++ R+ Q+ +++NA+ F+ KGS R + F V Sbjct: 747 EAVKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGSIRFGYELR-GKELYFYVA 805 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G I +D +S+F RFV Q G GLGLSI ++ +N GGH+ + S +T Sbjct: 806 DTGCGIAKDEQESIFGRFVKLNSFAQ--GTGLGLSICQTLVNHMGGHIGVESEKGKGSTF 863 Query: 785 NCRIP 789 +P Sbjct: 864 WFTLP 868 >gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] Length = 790 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 7/246 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 A++ E+N A A++ K+ F+ ++S+ELR+PL IIGF+D++ G L + K S Y Sbjct: 538 ADKYSEERNRA-ENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDY 596 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LLN++NDILD++ ++AG M + + + + + ++T E +I + Sbjct: 597 CHDIHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDV 656 Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + DG ADR+ L QI +L+NA+ F+ + TV LKA ++ F + + G Sbjct: 657 TCTVEDGI--QVRADRRALKQILLNLLANAVKFTPEHGTVSLKAHQEKNRICFEISDTGI 714 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + + FV N +G GLGL+I S I +HGG + ISS T + Sbjct: 715 GIADKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRF 774 Query: 787 RIPSKE 792 +PS + Sbjct: 775 LLPSSD 780 >gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 631 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 132/243 (54%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L+E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + +Y Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILD++ ++AG S I +N + E++QS+ ++ + + + Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D+ RL+Q+ S + NA+ F+ GS + +D F V + G Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + E+ C+ VF RFV + +G GLGLSI + I+ GG + + S + +T +P Sbjct: 570 MSEEQCRHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 Query: 790 SKE 792 ++ Sbjct: 628 YQQ 630 >gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 844 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 7/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + A A+ K+ F+ H+S+ELR+PL I+GF+ LL +LN +Q +Y++ I+ Sbjct: 365 LQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHD--STLNEEQQEYIDIIN 422 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ DILD+A ++AG + L ++ L+ L+ ++Q K + +++ V D Sbjct: 423 RSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEID 482 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730 + +++ D +L Q+ +LSNA+ F+ +G ++ + + + + +F V+++G I Sbjct: 483 PSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYLLFEVEDSGPGI 542 Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D +FN F + R + G GLGL+I F+++ GG + +S G T + +P Sbjct: 543 ECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLP 602 >gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 844 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 7/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + A A+ K+ F+ H+S+ELR+PL I+GF+ LL +LN +Q +Y++ I+ Sbjct: 365 LQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHD--STLNEEQQEYIDIIN 422 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ DILD+A ++AG + L ++ L+ L+ ++Q K + +++ V D Sbjct: 423 RSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEID 482 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730 + +++ D +L Q+ +LSNA+ F+ +G ++ + + + + +F V+++G I Sbjct: 483 PSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYLLFEVEDSGPGI 542 Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D +FN F + R + G GLGL+I F+++ GG + +S G T + +P Sbjct: 543 ECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLP 602 >gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 576 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711 I++K+ ++ G DR++ QI +L+NA+ FS G V L Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVSFAQAGVI 470 Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 + D F+ SV + G I + +F F S G R G GL Sbjct: 471 EGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D E L + N+ L +A +K+ F+ ++S+ELR+PL I+G T+ ++ G+L Sbjct: 1373 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 1432 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q ++ I S++ LL L+NDILDLA ++AG MKL+ + + L I + Sbjct: 1433 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 1492 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716 + I I V L D +RL Q+ +L+NA+ F+ + L+ D Sbjct: 1493 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 1552 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+V + G I E+ +F F + +A Q G GLGLS+V+ + +HGG V++ Sbjct: 1553 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 1612 Query: 775 SS 776 S Sbjct: 1613 IS 1614 >gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 815 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 39/382 (10%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 ++++ LE ++ L ++ T D +A+ DGR + +NPA + P Sbjct: 450 SLRLALELEHANLRRIFASTKDL----IALVSTDGRFEYANPAL-------VDTFGPVMG 498 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPL--P 534 +R I D F I + D+ + +G E +SD E+SI P+ P Sbjct: 499 VRTI--------------DYFQPAIANLGDDNTATRG--EWVSDLNGKTYEFSITPVDTP 542 Query: 535 NAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 + + +L ++T +AE A+ E EA ++ K F+ +S+ELR+PL IIGF++ Sbjct: 543 HGEMSALLALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLNAIIGFSE 602 Query: 593 LLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +++ LG + +KQ + Y I+ S LL L+NDILD+A ++ G L S + + + Sbjct: 603 IIENELLGPVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESEMDVGQTI 662 Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 Q + + +RI + I DG L + D +R+ Q + ILSNA+ F+S V + Sbjct: 663 RASVQLVGERAKAAGLRIGEQIPDG-LPWLMGDERRIKQTIANILSNAVKFTSADGRVTV 721 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 A D V + G I D + F RR G GLGL + F+++H Sbjct: 722 TAKTDENGLDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLARRFMDMH 781 Query: 769 GGHVSISSSDEGVTTINCRIPS 790 GG +SISS+ T +N P+ Sbjct: 782 GGTLSISSTPGQGTVVNLHFPA 803 >gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 396 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 23/273 (8%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 +L+ D VL E I PL N + +++ AE+ ++ + L+ A D + Sbjct: 119 DLMLDGVLHHYENRIFPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRL 178 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + +++QY E I +S +LLNL NDIL Sbjct: 179 KSAFLANMSHEIRTPLNAIVGFSKLIT---FATSTEEKNQYAEIIERNSEMLLNLFNDIL 235 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQR 686 DL++++A +K N I L D+ ++KQ H+ +K+I D A D R Sbjct: 236 DLSSLEADSLKFNIRPIKLTDICLQLKQQFC---HKTQNGVKLILDDVDADMYASGDWNR 292 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 ++QI S +LSNA F+ KG I R+ DF+ F VK++G IP + ++F RF Sbjct: 293 IIQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKV 350 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 351 NDFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 381 >gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1131 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 116/492 (23%), Positives = 220/492 (44%), Gaps = 42/492 (8%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363 IL +L V + I D + + + N F +WE+ L F+ N EL + Sbjct: 333 ILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY--DGT 390 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 + PE++ +++++F + E + W SN R + + ++T Sbjct: 391 QTPEEI--YDFRKHLFET-EEPEPIELGWAGGKSVIFDSRRISNDR--ILLTYADITAVR 445 Query: 424 DLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 + E + + L ++ + + +G+AV DG IK+SN A + + L P Sbjct: 446 EREKEIHEARAALERLGEMMRDATHAMPQGLAVV-QDGIIKMSNEALSDILQIPATYLEP 504 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPL 533 G + C+ D D I+ + D R + + + + Sbjct: 505 GEGWIGMFEFCA---ARGDFHDAAGEILQGWRDNIAARLPISTVFHVGGERWVNMDATVS 561 Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + F +VT+ E L + AD K+ F+ ++S+E+R+P+ ++G +L Sbjct: 562 KGQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAEL 621 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + +L+++Q +V+ I S LL ++NDILD + +DAG MKL + + + + + Sbjct: 622 LAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 678 Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 V +++ E NI + V + L + + D R QI + ++ NA+ F+ +G + Sbjct: 679 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVG 738 Query: 710 -LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 AA G+ + S++ + G IP + +SVF++F RR G GLGL+I Sbjct: 739 FQPAA--GGEIMASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGL 796 Query: 765 INLHGGHVSISS 776 ++L GG++++ S Sbjct: 797 VDLFGGYLNVES 808 >gi|159030650|emb|CAO88320.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 790 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 10/261 (3%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 Y +I + +L ++T+ + + L KN L + +K+ F+ VS+E +SPLT + Sbjct: 249 YPLIEKASGLWLLLATDITEQQQYCQELAVKNADLVHLNRLKDEFLACVSHEFKSPLTAV 308 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG + LL+ K+G LN +QS+Y + I S L+ LVND+LDL ++ G ++L S + + Sbjct: 309 IGLSSLLREQKIGELNPRQSKYADLIYRSGRQLMALVNDLLDLTRLETGQLQLTLSRVKI 368 Query: 648 NDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L V I K + ++ R+ + + L +AD RL Q+ +L NA+ F+ Sbjct: 369 DRLCQRVYDIIVDKYPQRLDLPSSYRLDI--ESGLDYVLADEARLQQMLVHLLDNAVKFT 426 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 G + +K R F+V + G IPE+ +F +F + + Q G GLGL + Sbjct: 427 IDGGNLGIKVNRWENWLAFTVWDTGIGIPEESQHLIFQKFQQLESPFTRQFEGAGLGLVL 486 Query: 761 VESFINLHGGHVS-ISSSDEG 780 + HGG +S +S + EG Sbjct: 487 SQKLARCHGGDLSFVSRAQEG 507 >gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 631 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 132/243 (54%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L+E E +A+++K++F+ ++S+E+R+PL I+GF+++L + + +Y Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILD++ ++AG S I +N + E++QS+ ++ + + + Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D+ RL+Q+ S + NA+ F+ GS + +D F V + G Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + E+ C+ VF RFV + +G GLGLSI + I+ GG + + S + +T +P Sbjct: 570 MSEEQCRHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627 Query: 790 SKE 792 ++ Sbjct: 628 YQQ 630 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D E L + N+ L +A +K+ F+ ++S+ELR+PL I+G T+ ++ G+L Sbjct: 1373 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 1432 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q ++ I S++ LL L+NDILDLA ++AG MKL+ + + L I + Sbjct: 1433 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 1492 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716 + I I V L D +RL Q+ +L+NA+ F+ + L+ D Sbjct: 1493 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 1552 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+V + G I E+ +F F + +A Q G GLGLS+V+ + +HGG V++ Sbjct: 1553 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 1612 Query: 775 SS 776 S Sbjct: 1613 IS 1614 >gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 958 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 18/236 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D+IK+ FV VS++L+SPLT I G+ L+ +G++N Q ++ + ++ + Sbjct: 729 KELDQIKSRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTVNEMQRDALQAVVRNTGAMTA 788 Query: 623 LVNDILDLATVDAGIMKLNYST---IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L++D+LDL ++AGI T +VL ++++E+K + KM + +++ ++ L Sbjct: 789 LISDLLDLGKIEAGIGISPQETDLAVVLREVIDELK--LRAKMGQISVQPEIPPSLPL-- 844 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 VAD R+ Q+F+ ILSNA+ ++ G V ++A + ++++G IPED +F Sbjct: 845 -VADPSRMRQVFTNILSNAIKYTPSGGQVQIRANNGDAKMHVQIQDSGLGIPEDSLPHIF 903 Query: 740 NRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +R +R G GLGL+I +S ++ HGG + + S TT N +P Sbjct: 904 ERF----YRVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLP 955 >gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R] Length = 389 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++T E LT E +A+ +K++ + ++++E+R+PL ++GF LL + Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAVVGFASLLS---II 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S +VL+ L+ E++ + Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 K NN+ + + DR RL+QI +L NA+ F++KG+ ++NG Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F V + G IP D + +F RFV Q G+GLGLS+ + I G + + S Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 781 VTTINCRIPS 790 +T IP+ Sbjct: 374 GSTFWFTIPN 383 >gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 583 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 146/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E +A +A D++K++F+ ++S+E Sbjct: 168 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 227 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 228 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 284 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 285 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 344 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG T+ + + +GD V++ G IPED VF+RF Q G GLGLS Sbjct: 345 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 401 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 402 ICKAIVEACRGEIGFESEFDKG 423 >gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] Length = 956 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 129/220 (58%), Gaps = 13/220 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D++K+ FV VS+ELR+PL +I+GFT+L+ +L KQ +Y+ I + L +L Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASILGFTELMLNRELKP--DKQKKYLTTIYNEARRLTSL 638 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGS-- 679 +ND LD+ ++AG + L ++ +V KQ I T +H +IK I D +G+ Sbjct: 639 INDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIH----KIK-IDDRSIGNDV 693 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D+ ++ Q+F+ ++SNA+ +S G +I++ +++ + V++ G IPED +F Sbjct: 694 ILGDKSKVEQVFTNLISNAVKYSPGGGDIIIRLYQEDKSVLAEVEDKGLGIPEDALDKLF 753 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F V N+ R + G GLGLSIV+ + H G +S++SS Sbjct: 754 TKFYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASS 793 >gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 838 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 136/259 (52%), Gaps = 11/259 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++T+ + E AL A+ K+ F+ ++S+E+R+PL ++G L++T+ Sbjct: 429 LLLLADITERKQVEAALRNAKRVAETANVAKSEFLANMSHEIRTPLNGVLGMLQLMRTT- 487 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 SL+++Q +Y+ S+ L L++DILDL+ ++AG + L + + DL + + Sbjct: 488 --SLDAEQREYLAAAILSTQRLTGLLSDILDLSRIEAGKLTLQEADFKVADLKASILEVF 545 Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---R 714 + +R++ +D + + +A D R+ QI ++ NA+ F++ G + A R Sbjct: 546 SLVARNKGLRLEFSTDAAMPARLAGDETRIRQILFNLVGNALKFTTTGGVDVAAFALPPR 605 Query: 715 DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770 +G +FSV++ G IP+ + FV A R G GLGLSIV + + GG Sbjct: 606 ADGRLPVVFSVRDTGVGIPDARLADIVEPFVQGLGAPYAPREGAGLGLSIVRRLVRMMGG 665 Query: 771 HVSISSSDEGVTTINCRIP 789 ++I + + G TTI C +P Sbjct: 666 ELAIDNREGGGTTIYCALP 684 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 141/258 (54%), Gaps = 14/258 (5%) Query: 530 IIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 I P+ N Q +T +V ++T+ R L E ++D +K F++++S+E+R+P+ Sbjct: 515 IAPVKNEQGDITNYVAVKEDITERKRLWSELVAAKEKAEESDRLKTCFLENMSHEIRTPM 574 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+GF++LLK L SK+ +Y+E I S +L+++ND++D++ ++AG + + Y+ Sbjct: 575 NGILGFSELLKEPLLD--GSKKDEYIELIHQSGKRMLSIINDLIDISKIEAGEIAIQYTE 632 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L+ + ++++ + + + V D+ RL+QI + ++ NA+ ++ Sbjct: 633 ASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNLVQNALKYT 692 Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759 + G I NGDF+ F V++ G IP+ + + +F+RF R GVGLGLS Sbjct: 693 ASGE--ICFGCTKNGDFLDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVREYEGVGLGLS 750 Query: 760 IVESFINLHGGHVSISSS 777 I +S + L GG + + SS Sbjct: 751 ISKSLVELLGGRIGVQSS 768 >gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1112 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 14/266 (5%) Query: 533 LPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 L + M+ FV + D + E + E +A+E K +F+ +S+E+R+P+ I+G Sbjct: 438 LSSLSAMVNFVRQKKLNDMISEE--MVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVG 495 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 ++LLK + LN +QS +V+ + SS LLN++ND+LDL ++AG M+L L D Sbjct: 496 MSNLLKET---DLNQQQSYFVDTLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTD 552 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L+++ K E ++R+ + D L + D R QI ++ NA+ F+ GS + Sbjct: 553 LVHDALVVFHAKAVEKSLRLHCLIDPHLPRWLILDPVRYTQIILNLVGNALKFTKHGSVM 612 Query: 709 I-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 + L + G D + VK++G IPED ++F F V N++ +G GLGL + Sbjct: 613 VHLSLVTEGGSDMLRLEVKDSGIGIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRK 672 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 FI L G + + S + TT +P Sbjct: 673 FIELMDGDIRVVSKEAVGTTFTADVP 698 >gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 632 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 133/222 (59%), Gaps = 13/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ ++VE I +++ Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 +LL L++DILDLA +++G M ++ + + +++NE+ S KM +N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +DR RL Q+ S L+NA+ ++S+G ++ A GD I FSV + G + +++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF ++G ++G GLGLSI E+ +N GG + ++S Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601 >gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 510 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 9/241 (3%) Query: 558 KNEALRK------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610 ++EA RK A++ K+ F+ VS+ELR+PL I+GF+D+L G L N++Q +YV Sbjct: 222 RDEADRKTAEAESANDAKSRFLAAVSHELRTPLNAILGFSDILSGEYFGKLENNRQREYV 281 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL++VN +LD++ ++AG +L + + + +A + E + + Sbjct: 282 GLIRQSGAHLLSVVNTMLDMSKIEAGRYELVPEPFPIEASIGACEAMLALQAKEKGLTLT 341 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 LG VAD++ + Q+ ++ NA+ F+ G V + AA +G SV + G I Sbjct: 342 SRVQRGLGDIVADQRAIQQVLINLVGNAIKFTDAGGAVTIDAAMADGMLKLSVCDTGIGI 401 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 D S+ FV + RR G GLGLS+V+ + LHGG +I+S+ T I I Sbjct: 402 AADRLASLGQPFVQIQNDYTRRYAGTGLGLSLVKGLVGLHGGSFAIASAPGEGTVITILI 461 Query: 789 P 789 P Sbjct: 462 P 462 >gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106] gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106] Length = 641 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 138/257 (53%), Gaps = 21/257 (8%) Query: 552 ERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGS-- 601 ER +TE+ +AL + A+ K+ F+ +S+ELR+PLT +IG + LL+ G+ Sbjct: 232 ERRVTERTQALHDALLAAQSANRAKSEFLATMSHELRTPLTCVIGISATLLRLYSNGAGI 291 Query: 602 ---LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 KQ +Y+ I S LL L+NDIL+L+ V+AG L S L L + S Sbjct: 292 KQISREKQQEYLHKIHDSGEHLLELINDILELSEVEAGKTILQISEFSLTKLAQKTLYSF 351 Query: 659 ATKMHENNI----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + E+N+ I+V D L F+AD++R+ ++ +LSNA+ F+ + V L+ Sbjct: 352 RERAQEHNVLLISDIQVKPDEDL--FIADQRRVEKVLFNLLSNAIKFTPESGQVTLRVGV 409 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + IF +++ G I E+ +F +F + +++R Q G GLGL++ + + LHGG + Sbjct: 410 NKNTAIFQIQDTGIGISEEQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQLVELHGGVI 469 Query: 773 SISSSDEGVTTINCRIP 789 ++S++ +T IP Sbjct: 470 KLTSTENVGSTFTVHIP 486 >gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 1021 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ L Sbjct: 633 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 690 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 691 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 749 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ GS + +D+ F Sbjct: 750 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 809 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S Sbjct: 810 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 861 >gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium] Length = 834 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 11/259 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++ D V E AL + A+ K F+ ++S+ELR+PL +IIGF+D+L G Sbjct: 573 TDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHELRTPLNSIIGFSDILVNQSFG 632 Query: 601 SLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + +YVEY I+++ + LL+L+NDILD++ ++ + LN I + N ++ Sbjct: 633 PMGV--PEYVEYARDINSAGSHLLSLINDILDVSRIEVEALSLNEQRIDAAHMANSCQRL 690 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + + + + AD +R+ Q+ +L+N++ F+ G TV LK D Sbjct: 691 VLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANSIKFTEPGGTVTLKGMLDE 750 Query: 716 NGDFIFSVKNNGSSI-PEDM--CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G F+F+V + G I PED+ S F + S+ R + G GLGL + + + LHGG + Sbjct: 751 EGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTR-RYEGAGLGLPLSKKLVELHGGGL 809 Query: 773 SISSSDEGVTTINCRIPSK 791 S+ S TT+ R P + Sbjct: 810 SLESQPGVGTTVTIRFPKE 828 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 544 NVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++T+ +AE+ L E NE L +A +K+ F+ +S+ELR+PL I+G + L+ Sbjct: 1291 DITERKQAEKQLRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQE 1350 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 GSL KQ + + I S LL+L+NDILDL+ +++G M L+ S + ++ L Sbjct: 1351 EVYGSLTPKQHKSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLT 1410 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 I + + NIR++ L D +R+ Q+ +LSNA+ F+ G V L+ D Sbjct: 1411 FIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDP 1470 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +G+ + SV + G I + +F FV RR G GLGL++V + L GG + Sbjct: 1471 DGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSI 1530 Query: 773 SISS 776 ++ S Sbjct: 1531 ALES 1534 >gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1388 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 10/251 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L A + K+ F+ ++S+ELR+PL +++ LL + G+L +KQ +Y Sbjct: 845 QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILAGLLARNPKGNLTAKQVEY 904 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M L+ + L ++++++ + E +R+ Sbjct: 905 AHVIHSAGSDLLQLINDILDLSKVEAGKMDLHVEPVALAAVVDDLRATFTPVTTEKGLRL 964 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKA---ARDNGDFI-F 721 KV I+ G + DR RL QI +LSNA+ F+ +G T+ + A R G+ + F Sbjct: 965 KVEIAPDVPGRLLTDRHRLAQILRNLLSNAVKFTEQGRVELTITMMAPASGRPGGEHVLF 1024 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I E+ +F F RR G GLGLSI L GG + S Sbjct: 1025 AVTDTGIGIAEENLDRIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLGGEIRARSVYG 1084 Query: 780 GVTTINCRIPS 790 +T +P+ Sbjct: 1085 SGSTFTLDLPT 1095 >gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 747 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 136/265 (51%), Gaps = 3/265 (1%) Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I L +L FV ++T + E L A++ K+ + +VS+ELR+PLT IIG Sbjct: 470 IDLGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIG 529 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F+D+L K G LN Q +Y+ I L N++N++LDL+ +D+G + ++ I +++ Sbjct: 530 FSDVLLKGKAGDLNDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHE 589 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L +K ++ + + I+ + ++ AD +L I +L N++ F+ GS I Sbjct: 590 LFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGSITI 649 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 +N ++ FSV ++G IP + +F F + + G GLGL++V+ + L Sbjct: 650 KLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVEL 709 Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792 HGG++ + S + IPS E Sbjct: 710 HGGNIWVESEVGTGSKFTFTIPSDE 734 >gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 576 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 142/280 (50%), Gaps = 32/280 (11%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------- 715 I++K+ ++ G DR++ QI +L+NA+ FS G V L A R Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTL-AVRQVSRAQVGI 469 Query: 716 -NGDFI----------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 +GD+ SV + G I + +F F + ++ + G GL Sbjct: 470 LDGDWPVHSFSLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792 GL++V+ LHGG V+++S D G V + R P+ E Sbjct: 530 GLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRTPATE 569 >gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG2J17] Length = 669 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 143/256 (55%), Gaps = 7/256 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++TD +AE +L + E A+ K F+ H+S+ELR+PL I+G++D+LK+ G Sbjct: 409 MIDITDRKQAEESLRKAMERAEFANRAKAEFLAHMSHELRTPLNAILGYSDILKSQVFGP 468 Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L N K S YVE ISA+ LL +++DILD++ V+AG + + S I + + E K + Sbjct: 469 LGNEKYSDYVENISAAGGHLLGILSDILDVSKVEAGELDIEDSEIDIAAAIKECKIMMLE 528 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + + G L ADR+RL QI +LSNA+ FS + V + A D G Sbjct: 529 RADIAKVSLASLVAGDLPRLRADRRRLRQILLNLLSNAVKFSHEKGKVSIAAETDAAGAI 588 Query: 720 IFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSIS 775 + V + G I PE+M K + F V ++ G+ G GLGLS+V S ++LHGG + I Sbjct: 589 VIRVADTGIGIAPENMGK-ILQPFGQVKESYVGKPGEGSGLGLSLVNSLMDLHGGTLDID 647 Query: 776 SSDEGVTTINCRIPSK 791 S+ TT+N P + Sbjct: 648 STPGEGTTMNIIFPPE 663 >gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1278 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 11/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ L E E +A K+ F+ ++S+E+R+PL IIGFTDLL +S + K++ Y+ Sbjct: 780 AEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS---FPSGKEASYL 836 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S LL L+NDILDL+ ++AG M L+YS + L + E+ T++ + Sbjct: 837 DAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFI 896 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVK 724 + L V D RL Q+ ++ NA+ F+ +G + L D SV+ Sbjct: 897 LDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDLTISVE 956 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +++F F ++ + R+ G GLGL+I + + + GG +S+ S T Sbjct: 957 DTGIGIRPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGT 1016 Query: 783 TINCRIP 789 T RIP Sbjct: 1017 TFTVRIP 1023 >gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 720 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 9/247 (3%) Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L EK E L + + K+ F+ ++S+ELR+PL +I+ + L+ + +LN Q + Sbjct: 28 AERNLEIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMSENTEENLNEDQIE 87 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I +S T LL+L+++ILDL+ ++AG M+L Y + L+D+ E+ A + E ++ Sbjct: 88 SAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVRLSDVTQELNSLFAPIVKEKSLD 147 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKN 725 + ++ L S + DR RL Q+ +LSNA+ F+SKGS I + + + +F+VK+ Sbjct: 148 LNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKD 207 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I E+ K +F F A RR G GLGLSI L GG + + S + + Sbjct: 208 TGIGIAEEKQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGS 266 Query: 783 TINCRIP 789 + IP Sbjct: 267 IFSLIIP 273 >gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 2607 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 184/389 (47%), Gaps = 37/389 (9%) Query: 424 DLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 +L T+ + L++ Q E ++EGV V P G++ L NPA + + RL Sbjct: 2226 ELATRNSILLEEQREESSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERL-- 2283 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--------VLEY 528 +R Y + D + T K +Q T ++ S S V+ Sbjct: 2284 ---LRQPLNRLHDYGEDDDQRKRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIAL 2340 Query: 529 SIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +I P+ P+ Q + + D R +ADE K F+ VS+ELR+PLT Sbjct: 2341 NIAPVIGPDGQGYGKVIVLRDITRE-----------IEADEAKRQFISDVSHELRTPLTA 2389 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I G+ D+L S +L S Q Y+ I ++ L L+ DIL+ + DA KLN++ + Sbjct: 2390 IKGYVDVLLLSGTQTLTSDQVSYLGIIKNNTNRLKALIEDILEFSRPDAS-KKLNFTRLS 2448 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 + ++++EV S+ + ++ ++V + L + +AD++R+ Q+ + SNA+ ++ +G Sbjct: 2449 IPEVIDEVVSSLRLEYQRKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGG 2508 Query: 707 TVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 + ++A + + F V++ G + + K +F F N R G GLGLSI ++ Sbjct: 2509 HIHVRAFLNRANMFQVDVEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKA 2568 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792 I HGG + ++S +T + +P ++ Sbjct: 2569 LIEQHGGEMWVTSEIGKGSTFSFILPLQQ 2597 >gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1045 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ L Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ GS + +D+ F Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 833 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885 >gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1] Length = 403 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 23/273 (8%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 +L+ D VL E I PL N + +++ AE+ ++ + L+ A D + Sbjct: 126 DLMLDGVLHHYENRIFPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRL 185 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + +++QY E I +S +LLNL NDIL Sbjct: 186 KSAFLANMSHEIRTPLNAIVGFSKLIT---FATSTEEKNQYAEIIERNSEMLLNLFNDIL 242 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQR 686 DL++++A +K N I L D+ ++KQ H+ +K+I D A D R Sbjct: 243 DLSSLEADSLKFNIRPIKLTDICLQLKQQFC---HKTQNGVKLILDDVDADMYASGDWNR 299 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 ++QI S +LSNA F+ KG I R+ DF+ F VK++G IP + ++F RF Sbjct: 300 IIQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKV 357 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 358 NDFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 388 >gi|84685778|ref|ZP_01013674.1| hypothetical protein 1099457000261_RB2654_13705 [Maritimibacter alkaliphilus HTCC2654] gi|84665871|gb|EAQ12345.1| hypothetical protein RB2654_13705 [Rhodobacterales bacterium HTCC2654] Length = 534 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 9/377 (2%) Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235 +E+ L+ + + D F +W D +G I W N +Y ++ Q Sbjct: 135 TEIGPDKYAVAALNRELDTLRAATDRTPFPIWQEDASGVITWCNRAYLDLADSMEEGGQS 194 Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID- 294 +LF + SS A + ++ +++ LN G+ AI Sbjct: 195 YKWPPTRLFAGPTAED--SSDAESRRERMALTPTGEETRHWFEVETRLNGDGQICTAIPA 252 Query: 295 ---VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351 V E++ + +T + +L + +AIF ++R L N + ++L + + FL + PS Sbjct: 253 DDLVKAEVSRTEFVTTLSKTFASLPIGLAIFSRSRELAMFNPALLDLTTLPVDFLVSKPS 312 Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPR 409 L+ LR +PE ++K+W++ I + ++ T++++W LP GQT V +P Sbjct: 313 LAAFLDRLREMQMMPEPKDYKSWRQRISDLVDAARNGTYEESWTLPGGQTYRVTGRPHPD 372 Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469 G ++FE+++ ++ L +Y ++ T+D L +AVF G + LSN + LW Sbjct: 373 GAVAFLFEDISAEIGLARRYRAEIETAQATLDALPSAIAVFSTSGVLTLSNSHYAGLWVP 432 Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529 E+ I S WD + R++++ + L L Sbjct: 433 EDGSDPSTMPIYEAVELWREAALPSAVWDQIKGAV-GHAGPRETVETGISLKDGRSLICR 491 Query: 530 IIPLPNAQTMLTFVNVT 546 ++PLP T++ F VT Sbjct: 492 VVPLPRGFTLIEFAQVT 508 >gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 420 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 179/336 (53%), Gaps = 30/336 (8%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E + Sbjct: 84 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMT 141 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ +R LT + E A+++K++F+ ++S Sbjct: 142 VTPCDVSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMS 201 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + ++ ++ LL LVNDI DL+ +++G Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SGEEERKMYADILAENNERLLRLVNDIFDLSQIESGT 258 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y+ +NDLL E+ K+ NN +K+I + + + ++R+R++Q+ S +L Sbjct: 259 IDFVYTEFDVNDLLRELDGIFKAKL--NNSSVKLICEAHVQPIIMYSERERIIQVLSNLL 316 Query: 696 SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 NAM F++ G I R G + F V + G IPE+ K +F+RF+ Q G Sbjct: 317 HNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEEQKKIFSRFIKLDREMQ--G 372 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL++ ++ I GG++ + S +T + +P Sbjct: 373 TGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408 >gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato Max13] gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato K40] gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] Length = 576 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 30/279 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714 I++K+ ++ G DR++ QI +L+NA+ FS G V L + Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGIL 470 Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 GD+ SV + G I + +F F + ++ + G GLG Sbjct: 471 DGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530 Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792 L++V+ LHGG V+++S D G V + R P+ E Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRTPATE 569 >gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 897 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 130/250 (52%), Gaps = 10/250 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ D + E AL + EA A K+ F+ +S+ELR+PL I+GFT L++ S N Sbjct: 397 DIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHSPN 456 Query: 604 ---SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S +++E I S LL L+ND+L+++ ++AG + LN + L LLN +++ + Sbjct: 457 IPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLEL 516 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715 + + D + +++ AD Q+L Q + +L NA+ F+ +G ++ K D Sbjct: 517 PASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHD 576 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F F + R ++G GLGLSI + FI L GG + + Sbjct: 577 LGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV 636 Query: 775 SSSDEGVTTI 784 SS+ G TI Sbjct: 637 -SSERGKGTI 645 >gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 632 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 133/222 (59%), Gaps = 13/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ ++VE I +++ Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 +LL L++DILDLA +++G M ++ + + +++NE+ S KM +N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +DR RL Q+ S L+NA+ ++S+G ++ A GD I FSV + G + +++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF ++G ++G GLGLSI E+ +N GG + ++S Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601 >gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 1045 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ L Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ GS + +D+ F Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 833 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885 >gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345] gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345] Length = 806 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 136/239 (56%), Gaps = 11/239 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E+ L E ++A+ K+SF+ ++S+E+R+PL IIG T++L SKL ++ Q Y Sbjct: 299 RMEKGLIFAREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI---QKDY 355 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I++SS LL L+NDILDL+ +++G ++ T + +++ + I K + NI + Sbjct: 356 LATINSSSQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIVL 415 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR-DNGDFIFSVK 724 ++I ++ +++ AD Q+L QI + SNA+ F+ GS +++KA +N +FSVK Sbjct: 416 RIIIGDEVPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSVK 475 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I ++ +F F G GLGLSI + + GG + I SSD+GV Sbjct: 476 DTGVGIDKNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMI-SSDKGV 533 >gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 542 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 3/231 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ ++S+ELR+PL IIG+TDLL G LN KQ +Y+ I++S LL+L+ Sbjct: 165 ANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKLNEKQLRYIGEINSSGKFLLSLI 224 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 ND+LD++ +DAG M+L + +++L+N + ++ + + I++K+I + +L +AD Sbjct: 225 NDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVKKKIKVKIIIEPELSVVMADL 284 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF- 742 ++ QI +L+NA+ F+ K V + A D + V++ G I ED +F+ F Sbjct: 285 RKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEVRDTGIGIAEDKIDKIFSEFY 344 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 N Q G G+GL++ + LH G + + S +T +P K+ Sbjct: 345 QAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKGSTFWFTLPLKK 395 >gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] Length = 774 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 13/242 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ AER L E +++ +K++F+ ++S+E+R+PL IIGF+ +L ++ Sbjct: 531 ITERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMTED---EE 587 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ ILL L+ND+LDL+ ++AG++ L YS LN +L +K + +++ + Sbjct: 588 EKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRLQD 647 Query: 665 NNIRIKVI-SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 R+ +I G +V +++ RL Q+ L+NA F+S GS RD D + Sbjct: 648 ---RVDLIFEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGSIRYGYEVRDK-DIYY 703 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 V + G+ IPED +F RF+ Q G GLGL I + I GG + ++S EG Sbjct: 704 YVTDTGTGIPEDKLHLIFERFIKLDSFKQ--GTGLGLPICQLIIQNMGGEIGVNSKLGEG 761 Query: 781 VT 782 T Sbjct: 762 ST 763 >gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 760 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 11/250 (4%) Query: 550 RAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R ER AL + +A A+ K+ F+ ++S+E+R+P+ +IG +L+ + L+ Q Sbjct: 219 RDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLDDDQK 275 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y E IS S + LL ++NDIL+ + ++AG M+L+ + L + +V ++ K E N+ Sbjct: 276 MYAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNV 335 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSV 723 + + D L F D R+ QI + I NA+ F+S G I + G D SV Sbjct: 336 EVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEVSGHTAGGYSDLRISV 395 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G+ IP D S+FN F V A G GLGL+I + + GG VS++S Sbjct: 396 KDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEG 455 Query: 782 TTINCRIPSK 791 +T +P K Sbjct: 456 STFTVELPLK 465 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 3/243 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + D + + L EK L +A++ K+ F+ ++S+ELR+PL + + LL Sbjct: 443 QTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLAD 502 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +K G+L+ +Q ++ + IS++ LL L+NDILDL+ ++AG + + + L L +E+ Sbjct: 503 NKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSA 562 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S A + + KV + G D QRL QI +LSNA+ F+ KG + Sbjct: 563 SFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDA 622 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G F+V++ G I ED + +F F R+ G GLGLSI +L GG + Sbjct: 623 GGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIR 682 Query: 774 ISS 776 ++S Sbjct: 683 VTS 685 >gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 870 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 121/510 (23%), Positives = 222/510 (43%), Gaps = 29/510 (5%) Query: 292 AIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350 A+D S+ E++ + T IL N+ I+++D + L N F EL + Sbjct: 368 ALDTSRRELSTKSRTLET--ILDNIAQGISVYDDDLRLVACNHRFGELLRLPPDMTRPGT 425 Query: 351 SNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409 + ++ L F R P + + ++ + H+ +G L VI P Sbjct: 426 ALEDYLRFNARRGEYGPGDPEAHVAER--MDLARNFQPHRFQRQRADGTALEVIGNPLPG 483 Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--W 467 GG + ++T E TL + ++ V + P G I NP F + + Sbjct: 484 GGFVATHTDITEARRAEEALRTLSRA----VEQSPVSVIITDPRGNIDYVNPKFMEVCGY 539 Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527 EE R G + R + + ++ +D W A T ++ E ++ + EL + Sbjct: 540 TLEEVR---GLNPRLLKSGLTQDAVYADLWRTITAGGT-WEGELQNRRKNGELYWERA-- 593 Query: 528 YSIIPL--PNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELR 581 SI P+ P+ +L ++ V + + AE AL +A A+ K F+ H+S+ELR Sbjct: 594 -SISPIRSPDG-AILHYLAVKEDITARKAAEDALVAAMQAAEDANRAKTVFLSHMSHELR 651 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT ++G+T++L++ G L S+ + +V IS S LL++++++LD++ ++ G ++ Sbjct: 652 TPLTAVLGYTEMLESGMAGPLPSQHADFVAAISDSGRHLLSIIDEVLDISRIELGSYRIA 711 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 L + E + + +I++ + G + V D + + Q+ +L NA+ + Sbjct: 712 TGPTDLRSIAQECVGMLRPQCVAKDIQLDLEEGGAM-PLVTDSRAVRQVLINLLGNAVKY 770 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 + G + + R V + G I D VF F V RGVGLGL+ Sbjct: 771 TEAGGRISVGLTRAGQTLRVVVADTGCGIATDKLAHVFEPFQRVDPLRADPARGVGLGLA 830 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 I + L G ++I S T + +P Sbjct: 831 ICRRIVELLHGDIAIQSEPGRGTAVTLTLP 860 >gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6] Length = 861 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 135/266 (50%), Gaps = 16/266 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592 LT NV E + ++ E LR A D K+ F+ +S+ELR+PL IIGF+ Sbjct: 593 LTIQNVQLYHNLEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFST 652 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L G L Q + + I+ + LL+L+N++LDLA ++AG + L+ + L L++ Sbjct: 653 VLIDELDGPLAPMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVS 712 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 EV ++ + + + L + AD R+ QI +LSNA+ F+ +G+ + Sbjct: 713 EVLDTMQGLLRSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTERGTITVSAN 772 Query: 713 ARD----NGD----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763 RD +G+ + +++ G IP + +F FV + R +RRG GLGL+IV Sbjct: 773 LRDEIGPDGNAQSMVVMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRRRGTGLGLAIVRR 832 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + H GH+ + SS +T + +P Sbjct: 833 LVEAHQGHIWVESSPNEGSTFSFSLP 858 >gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 527 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624 ++ K F+ VS+ELR+PL I+GF+D+L G L N +Q +YV I S T LL++V Sbjct: 243 NDAKTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVV 302 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N +LD++ ++AG +L + D + + ++ + E +R+ +G AD+ Sbjct: 303 NTMLDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQ 362 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + + QI ++ NA+ F+ KG V + A D +V + G I ED + + FV Sbjct: 363 RAVQQILINLVGNAVKFTDKGGLVTVDAEVDGAMLNLTVSDTGIGIAEDKLEKLGQPFVQ 422 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RR G GLGLS+V+ + LHGG +SI SS+ T + IP Sbjct: 423 IQNDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIP 469 >gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1613 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R + L+EKN+AL +A ++ K+ F+ ++S+E+R+P+ ++GF+DLL+ Sbjct: 1094 RRLKQLSEKNKALGRAKKEADIANKAKSEFLANMSHEIRTPMNAVLGFSDLLQDI---IT 1150 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y+E ISAS LL L+NDILDL+ ++AG + L+Y I L L+ E++Q + Sbjct: 1151 EPEAKEYLEAISASGKTLLRLINDILDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQA 1210 Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 E + +K D KL V D RL QI ++ NA F+ G I R N Sbjct: 1211 TEKGLNLKSEIDPKLPCGVELDEVRLRQILLNVVGNAFKFTDTGQIKITVNCRANPEHSE 1270 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 D SV++ G I D +FN F + + R+ G GLGL+I + + + GG V Sbjct: 1271 KIDLKISVEDTGIGISPDNQTKIFNAFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGTVH 1330 Query: 774 ISSS 777 + S Sbjct: 1331 LQSQ 1334 >gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419] gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419] Length = 525 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624 ++ K F+ VS+ELR+PL I+GF+D+L G L N +Q +YV I S T LL++V Sbjct: 237 NDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVV 296 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N +LD++ ++AG +L + + + + ++ + E +R+ +G AD+ Sbjct: 297 NTMLDMSKIEAGRYELLREPFRVAEAIAACEAMLSHQAREKGVRLASRVTRSVGEINADQ 356 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + + QI ++ NA+ F+ +G V + AAR+ +V + G I D K + FV Sbjct: 357 RAVQQILINLVGNAIKFTDRGGLVTVDAAREGALLKLTVSDTGIGIAADKLKMLGQPFVQ 416 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD----EGVTTINCRIPS 790 + RR G GLGLS+V+ LHGG VSI S++ E V +I C + S Sbjct: 417 IQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTEVVVSIPCDVSS 468 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 6/232 (2%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L N L +A K+ F+ ++S+ELR+PL +I+ ++ L G L +Q + Sbjct: 829 AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPLRDQQQK 888 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I AS LL L+ND+LDLA ++A ++L + +D+ + + + I Sbjct: 889 AIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQIH 948 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726 + + D FVAD +RL QI +LSNA+ F+ G V L+ D G F+V + Sbjct: 949 LSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSDT 1008 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I E+ +F FV + Q G GLGL +V + LHGG V + S Sbjct: 1009 GIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVES 1060 >gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 576 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 30/279 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L++LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714 I++K+ ++ G DR++ QI +L+NA+ FS G V L + Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVSIL 470 Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 GD+ SV + G I + +F F + ++ + G GLG Sbjct: 471 DGDWPVHSVPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530 Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792 L++V+ LHGG V+++S D G V + R P+ E Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRPPATE 569 >gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.] Length = 1019 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 15/254 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+R + +K L A + K+ F+ ++S+ELR+PL +I+ + LL +K G+L+ K ++ Sbjct: 312 AKRLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNLDQKNIEFA 371 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+ + LL L+N+ LDLA V+AG M+ ++ + + DL + +K+ E + Sbjct: 372 QTINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEKGLIFT 431 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------G 717 + DG FV+DRQ++ QI +LSNA F+ KG+ + DN Sbjct: 432 INQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEKGTISLDVFRPDNTVDLTLYGLVNKN 491 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSV + G IPED +S+F F R+ G GLGL+I L GG +++ Sbjct: 492 TIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGGEITLE 551 Query: 776 SSDEGVTTINCRIP 789 +++ T IP Sbjct: 552 TTEGKGTVFTLYIP 565 >gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] Length = 970 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 159/383 (41%), Gaps = 49/383 (12%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL-------------------WKTEEN---RLSP 476 T+D ++EG+A+FGPD R+KL N L W+ + P Sbjct: 351 TLDSVAEGIALFGPDDRLKLLNRRGYDLLAIPRTAEEEQWHLIQILEWQIAQGHFEEFPP 410 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536 GT ++ R +E G + F R VLE P + Sbjct: 411 GTPVQ-------RLIDEQYGGLGLKHSLPVFARHRAD---------GCVLEIRTYPSKDG 454 Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T T+ +VT+ R RAL EA + K FV +S+E+R+PL ++G LL Sbjct: 455 GTTRTYTDVTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSD 514 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + L+ +Q YV I LL++V+DILD + ++AG + L + +++ V Sbjct: 515 TP---LDDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSD 571 Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILK 711 + K E + I D D RL Q+ ++ NA+ F+ +G ++K Sbjct: 572 ILEPKAAEKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEATVVK 631 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D +SV + G IPE+ +F +F RR G GLGL+IV + G Sbjct: 632 GP-DGPRLRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFG 690 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S +T IP E Sbjct: 691 GELGVVSETGKGSTFWFEIPHVE 713 >gi|115376518|ref|ZP_01463751.1| two-component hybrid sensor and regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|115366451|gb|EAU65453.1| two-component hybrid sensor and regulator, putative [Stigmatella aurantiaca DW4/3-1] Length = 1090 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 25/347 (7%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++ +++GV + I + NPA R L + E ++A + E G+ Sbjct: 292 VEAMADGVLLTDEQNAIVVINPAARRLLRVTEE----------VSALTGQMLEERLGFQP 341 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 I + LQ +EL D ++ ++ P+ +A+ L V V R +TE+ Sbjct: 342 SELIRGWEYSGSQMLQEEVELF-DRHIQCTVTPVNDARGTLKGVCVV-----LRDVTEQ- 394 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + +E K+ FV VS+ELR+PLT+I G DL+ G +N KQ +Y+ S+ Sbjct: 395 ---KMLEERKDEFVSMVSHELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEK 451 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +LV+D+LDLA G +++N+ L++L+ + E +++ + Sbjct: 452 LNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLR 511 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736 +AD R+ Q+ + +L+NA+ F+ +G V L+ + G S N+G I E+ + Sbjct: 512 VLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLE 571 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F+RF R RG GLGL+I + HGGH+ S EGV Sbjct: 572 RIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV 618 >gi|310822048|ref|YP_003954406.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309395120|gb|ADO72579.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1097 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 25/347 (7%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++ +++GV + I + NPA R L + E ++A + E G+ Sbjct: 299 VEAMADGVLLTDEQNAIVVINPAARRLLRVTEE----------VSALTGQMLEERLGFQP 348 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 I + LQ +EL D ++ ++ P+ +A+ L V V R +TE+ Sbjct: 349 SELIRGWEYSGSQMLQEEVELF-DRHIQCTVTPVNDARGTLKGVCVV-----LRDVTEQ- 401 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + +E K+ FV VS+ELR+PLT+I G DL+ G +N KQ +Y+ S+ Sbjct: 402 ---KMLEERKDEFVSMVSHELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEK 458 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +LV+D+LDLA G +++N+ L++L+ + E +++ + Sbjct: 459 LNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLR 518 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736 +AD R+ Q+ + +L+NA+ F+ +G V L+ + G S N+G I E+ + Sbjct: 519 VLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLE 578 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F+RF R RG GLGL+I + HGGH+ S EGV Sbjct: 579 RIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV 625 >gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 632 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 133/222 (59%), Gaps = 13/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ ++VE I +++ Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 +LL L++DILDLA +++G M L ++ + + +++NE+ S KM +N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKM-PDNVALIAPQDSPE 505 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +DR RL Q+ S L+NA+ ++S+G + A GD I FSV + G + +++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF ++G ++G GLGLSI E+ +N GG + ++S Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601 >gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 488 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 8/239 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L + +E+K F HVS+ELR+PLT I LL G L+S Q + +E + + Sbjct: 241 EQLARLEELKADFTAHVSHELRTPLTAIREGIALLLEEIPGPLSSSQKEILEVVRGNGER 300 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L ++ ILDL+ ++ +M+ Y+ L L+ + Q + + NI ++ I G L Sbjct: 301 LFVSISSILDLSRMEGEMMEYQYAPCDLQTLIEKSVQGLDPIARKKNIGVETIRTGNLPL 360 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFI-FSVKNNGSSIPED 733 + D R+ Q+ ++SNA+ F+ +G +TV+ + R+ G + V + G IPE+ Sbjct: 361 LMLDESRMRQVIDNLMSNALKFTPEGGRISITTVLKRDDREKGRVVEVRVSDTGHGIPEE 420 Query: 734 MCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + VF RF S HRG+R +G GLGL+I + HGG + + TI +P+ Sbjct: 421 DVEKVFGRFYRSPHHRGKRHQGTGLGLAIARHIVTAHGGRIWAENEPASGATIVFTLPA 479 >gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei Go1] gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei Go1] Length = 854 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 10/270 (3%) Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 S++P+ T + +F++++D +AE L + A A+ + F+ +S+ELR+PLT Sbjct: 239 SVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSEFLATMSHELRTPLT 298 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 IIGF++L+ G + +++ IS S LL+L+N ILDL+ ++AG M+L Sbjct: 299 AIIGFSELMLGGSTGEFDELNKKFLGNISTSGKHLLSLINSILDLSKIEAGKMELQSDYF 358 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704 L D+ + K ++ + NI + + + G FV ADR R QI ++SNA+ F+ K Sbjct: 359 SLQDIFSNTKNILSPLALKKNISMDF--NVEPGFFVYADRTRFKQIMYNLVSNAVKFTQK 416 Query: 705 GSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 G +V +L + G + SV + G I +D K +F F + + + G GLGL + Sbjct: 417 GGSVEVLGIVSEKGVRV-SVSDTGIGISKDEIKQLFKPFKQIDSTLSRKYEGTGLGLVLS 475 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + F+ +HGG + + S +T +P K Sbjct: 476 KKFVEMHGGRIWVESEPGKGSTFTFEVPVK 505 >gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 935 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 20/252 (7%) Query: 549 VRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V E + E+ ++LR AD K F+ +S+ELR+PLT IIG + L G Sbjct: 545 VSLESCVIERTQSLRDALSAATAADRTKVEFLSTMSHELRTPLTYIIGMSATLLRWSFGE 604 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT- 660 L+ +Q Y+E I+ S LL ++NDIL+ A V++G LN S L++L+ +S+AT Sbjct: 605 LSERQRSYLETINRSGEHLLTVINDILEFAKVESGRSLLNVSNFPLSNLV----RSVATR 660 Query: 661 -----KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 K H+ ++ + + ++ +F AD +R+ QI S +++NA+ F+ G + L+ ++ Sbjct: 661 YQEDAKNHDVSLSVDCVLSPEVENFRADSKRIEQILSNLVNNAIKFTPAGGEITLRVQKE 720 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + V++ G IPE K +F +F + + + Q G GLGL++ + + LH G + Sbjct: 721 LDSILLQVEDTGIGIPESQQKFMFEKFKQLESPFQRQYAGTGLGLAMTKHLVELHNGTIQ 780 Query: 774 -ISSSDEGVTTI 784 IS+ +G T I Sbjct: 781 VISTVGKGSTFI 792 >gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 531 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%) Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556 D ER ++ LE S +++ I PL +A+ L + +V++ R + Sbjct: 174 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 233 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 K A++ K F+ VS+ELR+PL I+GF+D+L G L N +Q +YV I Sbjct: 234 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 293 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S T LL++VN +LD++ ++AG +L + + + + ++ + E +R+ Sbjct: 294 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 353 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 +G AD++ QI ++ NA+ F+ +G V + AA + +V + G I D Sbjct: 354 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 413 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + FV + RR G GLGLS+V+ LHGG VSI S++ T I IPS Sbjct: 414 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 470 >gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 1133 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 137/635 (21%), Positives = 275/635 (43%), Gaps = 61/635 (9%) Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGE-- 239 K N + + + + L V+ RD +++AN Y + +E G+ + G Sbjct: 188 KSVNELDALRTVLEDLPVAVFVRDDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEG 247 Query: 240 SRKLFKE-----------EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288 + +++E E++ M S+S V+ + + ++Y V+ SF + Sbjct: 248 AEPIYQENLLALRDGISVELESEMPSTSGHVYPVISRVNRVITADGRTY----VVGSFSD 303 Query: 289 AGIAIDVSKEITVN---DQLTHT--YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343 + K + + +++ H IL +L + + I D + + + N F +WE+ Sbjct: 304 ISPLKEREKALIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEFYSIWELPR 363 Query: 344 -------AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396 F+ N EL + + PE+L +++++F + E + W Sbjct: 364 EDRFDGRPFIDVIRRNHELGRY--DGTRTPEEL--YAFRKHLFEA-EEPEPIEVGWAGGK 418 Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQ--GETIDH----LSEGVAV 449 SN R + + +++ + E + + T ++ GE + +S+G+A+ Sbjct: 419 SVIFDSRRISNDR--ILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAI 476 Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509 DG IK+SN A + + + + G + C+ + D D + Sbjct: 477 V-QDGIIKMSNDAMADILQIPPHYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIA 535 Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569 R+ + + + + + F +VT+ E L + AD K Sbjct: 536 ARQPISTVFHVGGERWVNMEATVSSGQHWVALFTDVTELKSREEELRQLLSRAEAADRAK 595 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ ++S+E+R+P+ ++G +LL + +L+++Q +++ I S LL ++NDILD Sbjct: 596 SEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVKSGNALLTIINDILD 652 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688 + +DAG MKL + L + + +V +++ E NI + V + L + + D R Sbjct: 653 FSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFR 712 Query: 689 QIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFV 743 QI + ++ NA+ F+ +G + +AA G+ I S++ + G IP + SVF +F Sbjct: 713 QIVTNLVGNAVKFTERGHVFVDVGFQAAA-GGEIIASIRIEDTGIGIPREKLDSVFEKFS 771 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I ++L GG+++ S Sbjct: 772 QVDASSTRRHEGTGLGLAITAGLVDLFGGYINAES 806 >gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1297 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 136/268 (50%), Gaps = 15/268 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPL 584 N Q + F + TD + A+ E+ +A L +A+ +K+ F+ VS+ELRSPL Sbjct: 878 NGQMVKWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPL 937 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G+ LLK+ KL +L K +Q +E I ++ + L++D+LD++ + G + LN T Sbjct: 938 NPILGWAKLLKSRKLDAL--KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCT 995 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L + +++ +I I+ + D RL Q+ +LSNA+ F+ + Sbjct: 996 VDLVTTIEAALETVRLTAESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPE 1055 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 G + +K R V++ G I D VF RF R+ G+GLGL+IV Sbjct: 1056 GGEIEVKLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVR 1115 Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789 + LHGG V ++S EG+ TT ++P Sbjct: 1116 HLVELHGGSVQVTSPGEGLGTTFTVKLP 1143 >gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 608 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 48/347 (13%) Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI---------AATCSRYYNESDGW 497 VAVF PDG ++++ + + + PG+++ ++ A T + G Sbjct: 278 VAVFDPDGLVEIATESAERYFG-----MKPGSNVHDLGYPWMEELLAGTFRKGSGADSGK 332 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVR 550 + + I F D R+ + +I+P+P+ T L F Sbjct: 333 N--KSFIQHFADNREIF-----------FQPTIVPIPSGHPAEESSGTALIF-------- 371 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 R +T+ +E L E+K S + VS++LR+PLT + LL G LN +Q+ + Sbjct: 372 --RDVTQVHEQL----ELKRSVIATVSHQLRTPLTALRMSIHLLLEEHTGHLNGQQADLL 425 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 S L+++++D+LD+ +++G L+ S + + E + + + I+ Sbjct: 426 LAAREESERLVHILDDLLDINRIESGKAHLDLSALSPCRIGAEGMEPFLLPCRDQGVSIR 485 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L VADR+ L+ +F+ +LSNA+ F+S G ++ L A D+G+ FS+++ G+ I Sbjct: 486 NTIPETLPDIVADRESLMHVFANLLSNALRFTSAGGSITLNACEDDGNIRFSIEDTGTGI 545 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + + +F F + ++ G+GLGLSIV+ + HGG V S+ Sbjct: 546 DAEHMEHLFEPFYRVPGQREKNGIGLGLSIVKEIVEAHGGSVDAEST 592 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D E L + N+ L +A +K+ F+ ++S+ELR+PL I+G T+ ++ G+L Sbjct: 676 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 735 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q ++ I S++ LL L+NDILDLA ++AG MKL+ + + L I + Sbjct: 736 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 795 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716 + I I V L D +RL Q+ +L+NA+ F+ + L+ D Sbjct: 796 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 855 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+V + G I E+ +F F + +A Q G GLGLS+V+ + +HGG V++ Sbjct: 856 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 915 Query: 775 SS 776 S Sbjct: 916 IS 917 >gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1] gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1] Length = 553 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTS 597 F V D+ RA+RA + E R + E +N+ F+ ++S+ELR+PL I+GF+D+++ Sbjct: 284 FAAVRDA-RAQRAREHELEKARISAEQQNAGKSRFLANMSHELRTPLNAIMGFSDIMRQR 342 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G + + +Y E I S + LL L+ND+LD++ ++A +L D + V + Sbjct: 343 LFGPMGDRYGEYAELIHESGSHLLELINDVLDMSKIEAERFELAREDFDARDAVGAVLRL 402 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + ++ + + ADR+ + QI ++SNA+ F+ +G TV + A Sbjct: 403 MRGQAERAGVTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTPRGGTVTVTAQGAGE 462 Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V ++G I P D+ + R A Q+R G GLGLS+V +F LHGG ++I Sbjct: 463 TLELIVADSGVGIAPADLER--LGRPFEQAGDAQQRAAGSGLGLSLVRAFAALHGGEMAI 520 Query: 775 SSSDEGVTTINCRIP 789 S TT+ R+P Sbjct: 521 ESGVGEGTTVTVRMP 535 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K F+ VS+ELR+P+T+I G L+ G L + + + ++ L+ L+N Sbjct: 266 DRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEARELLTIARNNTDRLIRLIN 325 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILD++ ++AG M++ + + D++ + + + NI + L +AD Sbjct: 326 DILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEGLARVMADAD 385 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-- 742 RL Q+ ++SNA+ FS +GS V+++ AR+ GD + F V + G IP D +F RF Sbjct: 386 RLHQVLDNLISNAIKFSPQGSEVLIR-ARETGDGVRFDVIDRGPGIPADQTGLIFERFYR 444 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V NA + G GLGL+I ++ + HGG + + S+ +T + IP Sbjct: 445 VDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIP 491 >gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 883 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 2/229 (0%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD +K + S+ELR+P+T+I GF D+L G +++ Q + + I + L+ L+ Sbjct: 651 ADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLI 710 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +++LD++ V+AG +L + L ++L +V + ++ E I + V L VADR Sbjct: 711 DELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPHVVADR 770 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 QR+ QI ++ NA ++ +G TV + NG+ V++ G I E+ +F F Sbjct: 771 QRIEQIAVNLIGNACKYTPRGGTVWIGMHNGNGELRVDVRDTGVGISEEAKSHIFTPFYR 830 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 N R + G GLGLSI + + LHGG + S +T + +P K Sbjct: 831 ADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLPIK 879 >gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 867 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610 E AL + +AD++K++F+ ++S+E+R+PL I+GF+DLLK L + + ++ Q+V Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669 E I+ + T+LL L+NDILDL+ +++G M + L ++ EV +S M + +RI Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + I +G+ + D RL Q+ + +++NA F+ GS G V++ GS Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I ED K +F RF Q G GLGLSI ++ ++ G +S+SS T IP Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 389 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++T E LT E +A+ +K++ + ++++E+R+PL I+GF LL + Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S +VL+ L+ E++ + Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 K +N+ + + DR RL+QI +L NA+ F++KG+ ++NG Sbjct: 256 KAETDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F V + G IP D + +F RFV Q G+GLGLS+ + I G + + S Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 781 VTTINCRIPS 790 +T IP+ Sbjct: 374 GSTFWFTIPN 383 >gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 963 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 122/488 (25%), Positives = 209/488 (42%), Gaps = 72/488 (14%) Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKD 390 N+ +++W I A L T + ++L + PE K + +Y+ + + +D Sbjct: 342 NQRVIDMWRIPHALLETG-DDAQILTHVIDQLADPEPFVRK-----VRELYEHPDASSRD 395 Query: 391 TWHLPNGQTL----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH---- 442 T +G+ H + G +W F ++T Q E L + E ++ Sbjct: 396 TLLFRDGRVFARFSHPQRVGSAVVGRVWSFLDVTDQTRAEQNVRELSRQLSEELERSEQQ 455 Query: 443 ----------LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 + + V + P G NP F + G + I T Y Sbjct: 456 RYLLQCLLSAIPDAVWMKDPQGVFLSCNPEFAQML---------GQDVDRIIGTSDDDYF 506 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 + + F A D+R++ + T + + ++Y + +A+ +L + V +VRAE Sbjct: 507 PPEVAEAFRA------DDRRAAESTTPIRCEEWIDY----VSDARRVL-WATVKSAVRAE 555 Query: 553 RA---------------------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 L E A +A E K+ F+ H+S+ELR+PL IIGF+ Sbjct: 556 DGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRFLAHMSHELRTPLNAIIGFS 615 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +L L L ++Q V +I S LL L+NDILDLA +++G +LN I L+ L+ Sbjct: 616 QMLDMGALDPLTAQQQTAVSHIRDSGRHLLELINDILDLARIESGQSELNLDAIPLDPLI 675 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +EV ++ + RI + G+ G V ADR RL Q+ + SNA+ ++ G V + Sbjct: 676 DEVMA--LSRPAADGRRICIDRGGEAGLHVYADRTRLRQVLLNLTSNAIKYNRLGGRVTI 733 Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768 G+++ V + G+ I E + + +F F A + G G+GL I + I + Sbjct: 734 D-VEPAGEWVRIRVSDTGAGIDESLREEIFQPFQRLGAEKTAIEGTGIGLIICKHLIEVM 792 Query: 769 GGHVSISS 776 GG + S Sbjct: 793 GGSIDFDS 800 >gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 503 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E A +A D++K++F+ ++S+E Sbjct: 88 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHE 147 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 148 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 204 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 205 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 264 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG T+ + + +GD V++ G IPED VF+RF Q G GLGLS Sbjct: 265 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 321 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 322 ICKAIVEACRGEIGFESEFDKG 343 >gi|257790765|ref|YP_003181371.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474662|gb|ACV54982.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 572 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN F +S+ELR+PLT+I+ F +L+ + SL++K VE I A++T+LLN+VN+IL Sbjct: 335 KNEFFAIMSHELRTPLTSILAFARILR--GVDSLDAKTRSAVEEIEANATLLLNMVNNIL 392 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 ++ +A +L + DLL +++S+ I + +D + +AD ++L Sbjct: 393 TISKAEAHKNELVVEPVDFVDLLGFIRKSLEPVAKNKGIALTAKTDADVPVSMADWEKLR 452 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 +I ++ NA+ ++ G V ++A D + SV ++G I E + +F R+ Sbjct: 453 RIVENLVDNAIKYTHVGGRVDVRATFDGACIVVSVADDGMGIDEADQEGIFERYRQAGQS 512 Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R RG GLGL++V+ LHGG VS++S+ + +T RIP Sbjct: 513 PNRRYRGTGLGLAVVKELAELHGGSVSVASARKLGSTFTVRIP 555 >gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 531 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%) Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556 D ER ++ LE S +++ I PL +A+ L + +V++ R + Sbjct: 174 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 233 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 K A++ K F+ VS+ELR+PL I+GF+D+L G L N +Q +YV I Sbjct: 234 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 293 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S T LL++VN +LD++ ++AG +L + + + + ++ + E +R+ Sbjct: 294 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 353 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 +G AD++ QI ++ NA+ F+ +G V + AA + +V + G I D Sbjct: 354 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 413 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + FV + RR G GLGLS+V+ LHGG VSI S++ T I IPS Sbjct: 414 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 470 >gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 525 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%) Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556 D ER ++ LE S +++ I PL +A+ L + +V++ R + Sbjct: 168 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 227 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 K A++ K F+ VS+ELR+PL I+GF+D+L G L N +Q +YV I Sbjct: 228 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 287 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S T LL++VN +LD++ ++AG +L + + + + ++ + E +R+ Sbjct: 288 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 347 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 +G AD++ QI ++ NA+ F+ +G V + AA + +V + G I D Sbjct: 348 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 407 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + FV + RR G GLGLS+V+ LHGG VSI S++ T I IPS Sbjct: 408 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 464 >gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 631 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L+E E +A+++K++F+ ++S+E+R+PL I+GF+++L ++ + +Y Sbjct: 393 KAYSRLSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPV---EMREY 449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILDL+ ++AG S+I +N + E++QS+ ++ +++ + Sbjct: 450 ADIIETNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTL 509 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 F D+ RL+Q+ + ++NA+ F+ G+ + D F V + G Sbjct: 510 AFTERLPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCG 569 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C+ VF RFV + +G GLGLSI + + GG + + S + +T +P Sbjct: 570 MSNEQCEHVFERFVK--YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627 Query: 790 SKE 792 ++ Sbjct: 628 YRK 630 >gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 867 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610 E AL + +AD++K++F+ ++S+E+R+PL I+GF+DLLK L + + ++ Q+V Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669 E I+ + T+LL L+NDILDL+ +++G M + L ++ EV +S M + +RI Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + I +G+ + D RL Q+ + +++NA F+ GS G V++ GS Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I ED K +F RF Q G GLGLSI ++ ++ G +S+SS T IP Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492] Length = 867 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610 E AL + +AD++K++F+ ++S+E+R+PL I+GF+DLLK L + + ++ Q+V Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669 E I+ + T+LL L+NDILDL+ +++G M + L ++ EV +S M + +RI Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + I +G+ + D RL Q+ + +++NA F+ GS G V++ GS Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I ED K +F RF Q G GLGLSI ++ ++ G +S+SS T IP Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863 >gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E A +A D++K++F+ ++S+E Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHE 304 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG T+ + + +GD V++ G IPED VF+RF Q G GLGLS Sbjct: 422 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500 >gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] Length = 631 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L E E L++ D +K+ + VS+ELR+PLT+I G+ +L+ +G LN Q + +E Sbjct: 393 KELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNENQRRCLEI 452 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L L++++LDL+ +++G +K + I + D++NEV S+ E NI +K Sbjct: 453 AKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEKNIEVKCD 512 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + V D+ R++Q+ ++ NA+ FS + + A RD +K+ G IP+ Sbjct: 513 IEDNLTAKV-DKDRIIQVLINLIENAIKFSPVKGVIEIHAFRDKNYAHIIIKDYGPGIPK 571 Query: 733 DMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F++F N + +R G GLGL+I +S I HGG + + S Sbjct: 572 KDLERIFDKFYQVNFPKIKRDGAGLGLAICKSIIEAHGGKIWVES 616 >gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1177 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 131/245 (53%), Gaps = 5/245 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +RA+ ALT+K L A + K+ F+ ++S+ELR+PL + + LL +K G+L + Q + Sbjct: 456 LRAQGALTDKAHELELASQYKSEFLANMSHELRTPLNSTLILAKLLADNKPGNLQADQVK 515 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I A+ + LL L+NDILDL+ ++AG + + + + L + + + E + Sbjct: 516 YAQTIHAAGSDLLALINDILDLSKIEAGQVSVLVEPMTIATALQALMEPLRPIAREKGLE 575 Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + + G S D RL Q+ +LSNA+ F++KGS V L+ +R G + F+V++ Sbjct: 576 LTWTVDPGVPASMQTDPMRLAQVLKNLLSNALKFTAKGS-VGLQVSRVPGGMLAFAVRDT 634 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I E + +F+ F R+ G GLGLSI L GG +++SS+ + Sbjct: 635 GIGIAEQQQQFIFDAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGTLTVSSTPGQGSVF 694 Query: 785 NCRIP 789 +P Sbjct: 695 TLTVP 699 >gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] Length = 1348 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 136/263 (51%), Gaps = 5/263 (1%) Query: 533 LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 LPN V ++T RAE LT+ +A +K F+ +S+E+R+PL IIGF+ Sbjct: 1080 LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAIIGFS 1139 Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ K G + N + Y+ I+ S +L+LVND+LD++ ++AG ++ Y + LND Sbjct: 1140 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1199 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L E + + + + I+ +L VAD + + QI ILSNA+ ++ G VI+ Sbjct: 1200 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1259 Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 A + +GD + V++ G + + + F ++ RG+ G GLGL + ++ + Sbjct: 1260 STAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1319 Query: 768 HGGHVSISSSDEGVTTINCRIPS 790 + +I+S+ T + PS Sbjct: 1320 NRARFTINSTPGEGTLVEVAFPS 1342 >gi|254438509|ref|ZP_05052003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198253955|gb|EDY78269.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 477 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 2/237 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VN + + + + E+NE + A E+K+ F+ VS+ELR+PLT+IIG +L+K G Sbjct: 201 YVNQQERLEQMKLIQEENERTKAALEVKSQFLSTVSHELRTPLTSIIGSLELIKADPRGL 260 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + + ++ L L++D+LDL ++AG M ++ + NDL+ E +S A Sbjct: 261 LPDNLKPMIGIAARNAQRLAALIDDLLDLQKIEAGEMAFHFKPVDANDLVYEAVESTAGY 320 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + I + G+ DR RL+Q+ S +LSNA+ FS KG V ++ + Sbjct: 321 ASKLGIHVTTAPCGEDCQIAGDRNRLVQVMSNLLSNALKFSDKGGAVKVRVETLSTRIRI 380 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G IP VF +F V ++ + G GLGL+I + I H G V S Sbjct: 381 SVHDEGVGIPRGAKDCVFGKFSQVDSSDARKVGGTGLGLNITKQIIGRHNGTVDYVS 437 >gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483] Length = 654 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 129/243 (53%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L E E +A+++K++F+ ++S+E+R+PL I+G +++L + + S+Y Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNMLPHVEN---REEMSEY 472 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILDL+ ++AG + I +N L E++QS+ ++ NN+ Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + D+ RL+Q+ + + NA+ F+ G+ + D+ F V + G Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C VF RFV + +G GLGLSI + ++ GG + + S + T +P Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGATFWFTLP 650 Query: 790 SKE 792 ++ Sbjct: 651 YRQ 653 >gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 1050 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 10/246 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 M+ ++T AERAL + EA AD K++F+ H+S+E+R+PLT IIG + LL S Sbjct: 510 MVLVRDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESP 569 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 LN +Q + + I+A LL+L+ DILD++ ++AG + L L + + Sbjct: 570 ---LNPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLV 626 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA---A 713 H+ +R+ + I+ S + D RL Q+ +L NA+ F+ +G +I++ A Sbjct: 627 QQSAHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQGVVELIVRGHFQA 686 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771 + V + G IP D + +F FV H Q G GLGL+I + + L GG Sbjct: 687 EERYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGT 746 Query: 772 VSISSS 777 + +SS+ Sbjct: 747 LEVSST 752 >gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 768 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +RA+R+L +A +AD +K+ + VS+ELR+PL I G+ ++L+ + +L Sbjct: 371 LRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHAL--- 427 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q V+ I S+ L +V DILD +++ G ++L+ + + + L ++ + T Sbjct: 428 QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSA 487 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D D +RL Q+ S ++SNA+ F+ G +V + ARD G + +V + Sbjct: 488 GILLEFDCDASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVAD 547 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGV 781 G I + VF+ F ++ RRG+GLGLSIV LHGG V+++S+ D G Sbjct: 548 TGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGSVTVASAGRDRG- 606 Query: 782 TTINCRIPS 790 TT +P+ Sbjct: 607 TTFTVTLPA 615 >gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 389 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++T E LT E +A+ +K++ + ++++E+R+PL I+GF LL + Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S +VL+ L+ E++ + Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 K +N+ + + DR RL+QI +L NA+ F++KG+ ++NG Sbjct: 256 KAETDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIR 315 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F V + G IP D + +F RFV Q G+GLGLS+ + I G + + S Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373 Query: 781 VTTINCRIPS 790 +T IP+ Sbjct: 374 GSTFWFTIPN 383 >gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1160 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L E+ E L++A K+ F+ ++S+ELR+PL + + LL + G+L+ +Q ++ Sbjct: 469 RIQAQLEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQVKF 528 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ L +L ++ E + Sbjct: 529 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSF 588 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ +L + DRQR QI +LSNA F+ +G + + +D+ F+V++ G Sbjct: 589 QIEEQRELPQVLFTDRQRAEQILRNLLSNAFKFTDRGGVTLSVSRQDDHYLAFAVRDTGI 648 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +++F F RR G GLGLSI L GG +++SS +T Sbjct: 649 GIAADQQEAIFEAFRQADGTTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTL 708 Query: 787 RIPSK 791 +P + Sbjct: 709 LLPER 713 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 137/260 (52%), Gaps = 17/260 (6%) Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++D +A L + E LR KA K+ F+ +S+E+R+P+ I+G ++L+ Sbjct: 360 DISDRKKASELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQE 419 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + SLN Q +YV+ S++ +LL ++NDILD + ++ G +KL L +L+++V + Sbjct: 420 T---SLNEDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNK 476 Query: 657 SIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAA 713 + E +R+ K +S+G ++ D R+ QI ++ NA+ F+S G + ++ Sbjct: 477 LFVYRAEEKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESV 536 Query: 714 RDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D+G +F+VK+ G IP+ +VF F R G GLGL+I + + L G Sbjct: 537 MDDGAPCCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMG 596 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S TT ++P Sbjct: 597 GQIWVESEPGQGTTFFFKLP 616 >gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1021 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 123/215 (57%), Gaps = 7/215 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ FV VS+ELR+PL++I+GF++LL KL +++Y + I + L +L Sbjct: 607 EVDRMKSEFVSTVSHELRTPLSSILGFSELLLIKKLSE--EARTKYTKTIHKEAKRLTDL 664 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VND LDL ++ G + + DLL EV +S A +++I ++ + + AD Sbjct: 665 VNDFLDLQRMELGKQVYDKEDFIALDLLAEVVESFAASGVDHDITLQTVERFFIN---AD 721 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 ++R+ Q+ +LSNA+ FS KG+ + L D F +K+ G IP+D+ ++F++F Sbjct: 722 KERVTQVLINLLSNAVKFSPKGTKITLGVTPDEEYAKFFIKDQGLGIPKDVQDNLFSKFY 781 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V N+ R + G GLGLSI + + HGG + + S Sbjct: 782 RVDNSDRRKIGGTGLGLSICKEIVEAHGGKIWVES 816 >gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 936 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 132/235 (56%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E ++D +K++F+ ++S+E+R+PL I+GF+DLL S Sbjct: 681 DVTELKETEQRLIEAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSDLLAES---DDR 737 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y++ + ++ +LL L++DILDL+ ++AG K + + L NE+ +S + K+ Sbjct: 738 EERFGYLKIVQENNELLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIK 797 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + +++ + +D+ R++Q+ S ++NA+ F+S+G+ + N + V Sbjct: 798 NHQVKLIFDEQSPVYYITSDKNRVIQVLSNFINNALKFTSQGTITLGYELLPNHELKLYV 857 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G I E+ K +F+RFV Q G GLGLSI +S + GG + ++S + Sbjct: 858 CDTGQGIAEEKQKVIFDRFVKLNTFVQ--GTGLGLSICKSLVKQMGGQIGVNSKE 910 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ + E LTE A A++ K+ F+ +S+ELR+PL I+GF+++L G L Sbjct: 399 VDITEHKQLEVKLTEALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPL 458 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N KQ YV I S+ LL ++ND+LDLA ++AG T+ + LL + I + Sbjct: 459 NDKQQVYVNDILDSARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRA 518 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 NI +++ D + V D +R QI +LSNA+ F+ G + ++ RD G+++ Sbjct: 519 AAKNIAVELAVDAGVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVE-CRDAGEWLE 577 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV++ G I + +F F VS + G GLGL+I + LHGG + + S+ Sbjct: 578 ISVEDTGIGIAATHAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSE 637 Query: 779 EG 780 G Sbjct: 638 PG 639 >gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 1010 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +K A +AD +KN F VS+ELR+PLT+I+G+ +L+ ++G +N +Q++++ + Sbjct: 746 VAQKRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQARFLGIVE 805 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L LV D+L +A V+AG + L + L ++ + + + + + ++ Sbjct: 806 RNGKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETE 865 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + D RL Q+ ++SNA+ F+ G V + D + +V + G IP D Sbjct: 866 -PVPPIRGDADRLGQLVDNLISNALKFTPSGGDVTVTLRIDGDEVALAVADTGIGIPADE 924 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF S A G+ G+GLGLSI ++ HGG + + S TT +P Sbjct: 925 QARLFDRFFRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLP 981 >gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 732 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 148/271 (54%), Gaps = 22/271 (8%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIG 589 L A ML FV ++ R ++ + E + + +K EI K +F+ ++S+E+R+PL I+G Sbjct: 194 LMTAAGMLWFV-MSRIRRQQQLILELDRSEKKIREIAMIKENFMTNMSHEIRTPLNAILG 252 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 FT+LLK+ K L+ +++V I + LL ++NDILDL+ ++AG++++ + + Sbjct: 253 FTNLLKSRK---LDDSSTEFVGSIQKAGENLLTIINDILDLSKIEAGMVRIESNPFSVRG 309 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-----FVADRQRLLQIFSKILSNAMDFSSK 704 LL+ ++ + K+ E K++ G++ S + D RL Q+ ++ NA+ F+ K Sbjct: 310 LLHSIQTLFSEKVKEK----KLVLQGEIASDVPDTLIGDATRLTQVLVNLIGNALKFTEK 365 Query: 705 GSTVILKAARD-NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G VI + R +G+ I F++ + G I D S+F+RF R+ G GLGL Sbjct: 366 GGIVISVSNRQSDGNIIQLAFAITDTGIGIEPDKLGSIFDRFNQAEDSITRKYGGTGLGL 425 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SIV+ + L GG +S+ S TT IP Sbjct: 426 SIVKDLVILQGGDISVESEPGKGTTFRFFIP 456 >gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1027 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A++ K+ F+ ++S+ELR+PL I+GFT L++ SL + QY++ ++ Sbjct: 551 LKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDV--SLKADHQQYIKIVN 608 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ND+L+L+ ++AG LN + L LL ++ + K N+ ++ D Sbjct: 609 KSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNLSLRFEID 668 Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730 ++ F+ D +L Q+ +L NA+ F++KG+ VI + IF+V++ G I Sbjct: 669 SQVPPFIKNDENKLRQVLINLLGNAIKFTNKGNVTLRVINQELEQLNTLIFAVEDTGPGI 728 Query: 731 PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 P + + +F F + R + G GLGL I ++F+ + GG ++I S Sbjct: 729 PPEEVQDLFKAFKQTKTGRESQEGTGLGLRISQNFVQMMGGKITIES 775 >gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1410 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ ++ E+ L + E A + K+ F+ ++S+E+R+P+ IIGFT+LL Sbjct: 898 IDLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQ---VT 954 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y+ I A+ LL L+NDILDL+ ++AG M L+ + + L +E+ Q + Sbjct: 955 EPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINI 1014 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------ 715 + V D L + D RL QI +L NA+ F+ +G + +A D Sbjct: 1015 QRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSACDVDEHHS 1074 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 D + V + G IPED +FN F ++ ++ G GLGL+I + +N+ GG + Sbjct: 1075 KLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIW 1134 Query: 774 ISSSDEGVTTINCRI 788 + S+ TT N I Sbjct: 1135 VESTPGQGTTFNLLI 1149 >gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1366 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 17/244 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A+ K+ F+ ++S+ELR+PL I+GFT LL + L S+Q Y++ I Sbjct: 886 LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQN--SGLTSQQQDYLQIIQ 943 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+N++LDL+ ++AG + LN + L LL + + K N+ + + D Sbjct: 944 QSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQLD 1003 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNN 726 + +V D +L Q+ +L NA+ F+ G + G F+ F V++ Sbjct: 1004 QDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTL------RGSFVSSVSQLYFEVEDT 1057 Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G I D + +F FV ++ R ++G GLGL+I + ++NL GG ++I S +G Sbjct: 1058 GPGITPDEQERLFQPFVQTDVGRRHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFM 1117 Query: 786 CRIP 789 +P Sbjct: 1118 FNLP 1121 >gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 882 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 882 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 632 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 132/222 (59%), Gaps = 13/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ ++VE I +++ Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 +LL L++DILDLA +++G M ++ + + +++NE+ S KM +N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +DR RL Q+ S L+NA+ ++S+G + A GD I FSV + G + +++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF ++G ++G GLGLSI E+ +N GG + ++S Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601 >gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 882 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 882 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 882 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 595 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 7/220 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +E+K+ F+ +S+ELR+P+T + G D+L+ LG LN Q +E S LL Sbjct: 368 LEYLNELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKLNDSQLDLLETAGKSIERLL 427 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N VN++LD A ++ G +L YS +L+ E + + +++ + + V I G+ + Sbjct: 428 NQVNELLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKKKLELAVEIHAGENRTM 487 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 ADR+R+LQI +LSN++ F+ + + +KA ++ + V + G IP + K++F Sbjct: 488 RADRERILQILLNLLSNSIKFTPQRGKITIKAYMEDNEMTIEVIDTGIGIPVEKQKNIFT 547 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +F V+N Q G GLGL+I I +HGG +S S++ Sbjct: 548 KFYQVNN----QINGTGLGLAISRQLIEMHGGKISFESTE 583 >gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 635 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 163/329 (49%), Gaps = 20/329 (6%) Query: 474 LSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-LSDSVL 526 ++PGT + + R + DLF I D + K ++ LE+ S Sbjct: 180 MAPGTILLHPVEVLKGADGRSIYSPEVSDLFLCNIRECLKDGKLKEIEYPLEVDGSKHYF 239 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 + I P + ++ D +R L E AD +K+ F+ ++S+E+R+PL Sbjct: 240 QARIAPFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNA 299 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF++++ L ++ +Y+E I +S +LL L+NDILDL+ +++G ++++ + Sbjct: 300 IVGFSEIMA---LTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVE 356 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSK 704 + L++EV++ KM + N+ +KV+ G F DR R++Q+ LSNA+ + Sbjct: 357 IAGLVDEVEKVHQLKM-KLNVDLKVVRPQ--GEFWTSTDRNRVMQVLFNFLSNAIKNTET 413 Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 GS + + GD++ V + G IPE+ +F RF Q G GLGLSI +S Sbjct: 414 GSITL--GLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ--GTGLGLSICKS 469 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792 + GG + +SS +T +P +E Sbjct: 470 IVERLGGRIEVSSELGQGSTFALYLPYQE 498 >gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 704 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 4/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 N RA+ LT A +A K+ F+ +S+ELR+PL IIGF++ +K G L Sbjct: 441 NAVLEARADE-LTRALMAAEQASLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLG 499 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + K ++Y + I+ S T LL+LV+DILD++ V++G LN + + + V + A + Sbjct: 500 HGKYAEYAKDINNSGTHLLDLVSDILDISRVESGTDALNEEEVCIESVARAVLAATAAQA 559 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + ++ +D L AD +++ QI + ++ NA+ F+ G TV + ARD + + Sbjct: 560 GKAEVVCRLDADAGLPPVFADERKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGYRIA 619 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I + RF + + R + G+GLGL IV+ HGGH +I S+ Sbjct: 620 VADTGIGIVAEDIPKALARFGQLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGR 679 Query: 781 VTTINCRIPSK 791 TT+ +P + Sbjct: 680 GTTVTITLPRE 690 >gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622] gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 502 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L++ D +K++F+ VS+ELR+PL +IIG++++L G+LN +Q YV I Sbjct: 232 LAQANIRLKELDRLKSTFLGTVSHELRTPLASIIGYSEMLAEGLAGALNPEQLLYVRTIV 291 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 LLNL++ ILDL+ ++AG ++L + L ++ S+A + + ++V + Sbjct: 292 EKGESLLNLISSILDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLP 351 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGD-----FIFSVKNN 726 AD +L Q+ +L+NA+ F+S G +V++ A + + V++ Sbjct: 352 PLPQPRLAADADKLRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDT 411 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I ED +++F F V + + G GLGL+IV+S + HGG VS+ S Sbjct: 412 GMGIREDQFENIFQSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSVES 463 >gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 882 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +Y+ I++++ +LL L+NDILDLA ++AG ++ S + +N L ++++QS K Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++V K+ + + DR R+ Q+ + ++NA+ F+++GS + RD+ + F Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 VK+ G I +D VF RFV Q G GLGLSI + I GG + + S Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733 Query: 782 TTINCRIP 789 +T +P Sbjct: 734 STFWFTLP 741 >gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 506 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 139/257 (54%), Gaps = 12/257 (4%) Query: 539 MLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593 ML+F + D++ AE A + +EA R+A++ K+ F+ +S+ELR+PL I+GF+++ Sbjct: 226 MLSFRSEKDALIAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEV 285 Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + LG + N Y + S LL+L+N+ILDL+ ++AG +LN ++L +++ Sbjct: 286 MANEVLGPMSNPTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVE 345 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + K +IR+ + L AD + L QI +LSNA+ F++ G + ++ Sbjct: 346 DCCHMMELKARNKDIRVIQDFEQTLPRLFADERALRQITLNLLSNAIKFTATGGEIRVRV 405 Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 G +I S+K+NG IPED V + F S A + +G GLGL IV+ + +H Sbjct: 406 GWTAGGGQYI-SIKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMH 464 Query: 769 GGHVSISSS-DEGVTTI 784 GG + S EG I Sbjct: 465 GGEFELHSKLREGTEAI 481 >gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 1197 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 7/236 (2%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 D +RA+ L E L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 466 ADLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKM 662 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ L+ L E+ + +A Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSLDATLQSLEELFRPMAGAK 585 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 H N + ++ G S V+D QR+ QI +LSNA+ F+ +G + A D+ Sbjct: 586 HLNLVFDRL--PGAPDSIVSDGQRVTQILRNLLSNAVKFTERGEVALSVAPADDDMLRID 643 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V+++G I D + +F F + Q G GLGLSI F L GG ++++S Sbjct: 644 VRDSGIGIASDKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699 >gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 643 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 148/308 (48%), Gaps = 33/308 (10%) Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-A 551 E+ W L A D R+ + LLS S+ E I + +Q M DS+R A Sbjct: 328 ENKLWGLLIA--HQCDAPRQWTESEKALLS-SIAEQLAIAINQSQLM-------DSLREA 377 Query: 552 ERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 R LT++ + L + A I+N F+ +S+EL +PLT +IG + Sbjct: 378 TRKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLTYVIGMSST 437 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L LG L +Q +Y++ I S LL ++NDILDL+ + AG LN L L Sbjct: 438 LLRWPLGELTPRQREYLQTIHDSGERLLEMINDILDLSQIQAGKTVLNICEFSLTRLAEN 497 Query: 654 VKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S+ K + +K V + + F AD R+ QI +L+NA+ F+ +G +V L+ Sbjct: 498 IVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTPQGGSVTLR 557 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ IF V++ G IPE+ VF +F V ++ G G+GL++ + + LH Sbjct: 558 FWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALTKQLVELHR 617 Query: 770 GHVSISSS 777 G + + S+ Sbjct: 618 GRIEVEST 625 >gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 553 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 133/242 (54%), Gaps = 8/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611 RA TE +A+ K+ F+ +S+ELR+PL I+GF++LL T +++++ + Y Sbjct: 289 RARTEAE----RANLAKSRFLAAMSHELRTPLNTILGFSELLATDTEQRIDARRKEDYAR 344 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL +VNDILDL+ V+AG +L++ I + L++ + + NI++ Sbjct: 345 IIHESGQHLLGVVNDILDLSRVEAGAYELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTT 404 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + +L +AD++ + Q+ +LSNA+ FS G V + + NG SV+++G+ + Sbjct: 405 LLPARLPRPMADQRAVRQMTLNLLSNAVKFSEHGGLVEVNVSAQNGVVSLSVRDSGAGMS 464 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + F +A R + RG GLGL++V + + LH G ++SS G TT+ +P Sbjct: 465 PAEVERLGEPFFQAGDAER-RARGSGLGLAVVRALVKLHDGAFEVTSSVGGGTTVTISLP 523 Query: 790 SK 791 + Sbjct: 524 VR 525 >gi|16331424|ref|NP_442152.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1001594|dbj|BAA10222.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1178 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 137/559 (24%), Positives = 251/559 (44%), Gaps = 75/559 (13%) Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-- 337 VR++ GE I++D+S + + + I+H++T+ I Q + + R +E Sbjct: 628 VRLVKKSGEL-ISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQRENYFRRQLLEKM 686 Query: 338 ------LWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387 +E++ L F NP + + + E++N W E ++S + E Sbjct: 687 VEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQ------EEINQCGWYETLYSHGQPQEA 740 Query: 388 H--------------KDTWHL--PNG--QTLHV---IVTSNPRGGTIWMFENLTVQVDLE 426 K+ W + +G +T+ + ++TSN + + + +++T Q Sbjct: 741 VRVRMKAVALGVDMVKEEWQIIRRDGALRTVEISTALITSNNQTNILAVIQDITDQ---- 796 Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-----PAFRSL--WKTEENRLSP--- 476 + +++ T+ + E + +F I SN P+F SL + +E P Sbjct: 797 KRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFESLTGYTPDEMYEDPLLW 856 Query: 477 -GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535 H A + W +F+ D + T+E L D + + Sbjct: 857 QKIHREEYAENLEQARPNLGEWTIFS---MEKKDGTQIWAQTVEFLVDDLSD-------T 906 Query: 536 AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 A+ ++ ++TD RAE R+L ++ R+ +E K+ FV VS+E R+PLT+IIGF Sbjct: 907 ARVVVFGQDITDIKRAEIETLRSLVKE----RELNEAKSQFVDIVSHEFRTPLTSIIGFG 962 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +LL K+ QY+ I SS L L++D+L ++ DA +++ I L +L Sbjct: 963 ELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLA 1022 Query: 652 NEVKQSIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 N++ ++ + + E+N + S V D + L I ILSNA+ +S+ GST+ L Sbjct: 1023 NDLIENFSCGLGSEHNFELNYHLKPDEHSLV-DVRLLRHILENILSNAIKYSAPGSTITL 1081 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770 ++D +F V++ G IP + +F F ++ G G GLGLSIV+ ++ GG Sbjct: 1082 DISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQGG 1141 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S TT+ ++P Sbjct: 1142 TIEVISMPGKGTTMVIKLP 1160 >gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1023 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D ER + E +A ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 622 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 681 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + N + S+ Sbjct: 682 ---QADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 738 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 +M +R+ I+ + DR R+ Q+ + ++NA+ ++ KGS + D G Sbjct: 739 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGSIEMGYEVMDTGIR 798 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ VK+ G IPE+ VF+RF Q G GLGLSI ++ GG V S Sbjct: 799 LY-VKDTGIGIPEEKKNKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 852 >gi|218437602|ref|YP_002375931.1| histidine kinase [Cyanothece sp. PCC 7424] gi|218170330|gb|ACK69063.1| histidine kinase [Cyanothece sp. PCC 7424] Length = 843 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 5/252 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VT + + L KN L + + +K+ F +S+EL+SPLT++IG + LLK KLG L Sbjct: 314 LDVTQQQQFCQELALKNADLIQLNRLKDEFFTCISHELKSPLTSVIGLSSLLKEQKLGEL 373 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q Y E I S L+ LVND+LDL ++ +KL + + + + S+ K Sbjct: 374 NERQVHYTELIYHSGRQLMTLVNDLLDLTRLETRQLKLKLLPVEIKSVCQKAYHSLEEKY 433 Query: 663 H---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E I + D L VAD RL Q+ +L NA+ S + LK R Sbjct: 434 KGKIEPPIPFTLEIDPGLKEIVADELRLQQMLFHLLDNAVQLSESDGEIGLKVNRWENWI 493 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+V + G IP++ +F ++ S N R Q G GLGL + + HGG +S S Sbjct: 494 AFTVWDTGIGIPQESQTLLFQQWQSQENLLREQLEGTGLGLILTQRLAKAHGGDISFISR 553 Query: 778 DEGVTTINCRIP 789 E + +P Sbjct: 554 KERGSQFTLLLP 565 >gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1054 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 154/296 (52%), Gaps = 24/296 (8%) Query: 501 AAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTMLTF----------VNVTDSV 549 A + T FD+ +S QGT+E + + + P+ N L F ++T+ Sbjct: 710 AQLATKFDEIIQSECQGTIETVHQRK-DGTEFPVENFLQSLKFDEGYLLISSARDITEHK 768 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE AL + E A+ K+ F+ ++S+E+R+P+ +IGF+D+L SK+ + KQ Y Sbjct: 769 QAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGFSDIL-ASKV--TDKKQKTY 825 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + LL L+NDILDL+ ++AG + + Y + L + E++Q + KM E N+ Sbjct: 826 LDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLKMAEKNLEF 885 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG----DFIFS 722 + +D L + D RL Q+ ++ NA+ F+ G + K + +N D I + Sbjct: 886 ILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDSGYIKLCANKGSTENDHSQVDLILA 945 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V+++G IP + +F F + R+ G GLGL+I + + + GH+++ S Sbjct: 946 VEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGHITVES 1001 >gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 752 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD A+RAL E + A++ K+ F+ S+E R+PL IIG + LL + +L Sbjct: 208 DVTDRTEAKRALGEARDHANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLET---ALT 264 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ YV+ + AS LL+L+ ++LD + ++AG + L + +L+DL+ ++ + +A + Sbjct: 265 PEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQ 324 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 + I D L + + D RL Q+ + NA+ F+S G +I+ D F Sbjct: 325 ARQLAIASYIDETLPTEVIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRF 384 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I D +F F + R G GLGLSI + + GGH+++ S Sbjct: 385 MVRDTGIGIAPDAQARIFRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPG 444 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 445 SGSTFEVSVP 454 >gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 955 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D ER + E +A ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 554 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 613 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + N + S+ Sbjct: 614 ---QADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 670 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 +M +R+ I+ + DR R+ Q+ + ++NA+ ++ KGS + D G Sbjct: 671 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGSIEMGYEVMDTGIR 730 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ VK+ G IPE+ VF+RF Q G GLGLSI ++ GG V S Sbjct: 731 LY-VKDTGIGIPEEKKNKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 784 >gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 607 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 140/271 (51%), Gaps = 9/271 (3%) Query: 526 LEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 LE P +T + V ++T+ E+AL E +AD+ K+ F+ +S+ELR+P Sbjct: 308 LEPGAATAPTGETEVVAVMRDITERKLHEQALDEARAEADRADDAKSRFLATMSHELRTP 367 Query: 584 LTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 L IIGF+D++ +LG+ ++ +Y + I+ S LL++VN ILD++ +++G ++ Sbjct: 368 LNAIIGFSDMIVQEDELRLGA--ERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEI 425 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 L +A K ++ I + + L V D + QI ++SNA+ Sbjct: 426 VPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLVSNAVK 485 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 F+ +G TV + AA ++ + V + G I E+ K + + F QRR G GLGL Sbjct: 486 FTERGGTVTVSAAVESTRLVLCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGL 545 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SIV+S + +HGG + + S + TT+ +P Sbjct: 546 SIVKSLVRMHGGEIDVRSQIDCGTTVTVSLP 576 >gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 561 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 6/244 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L E + + K+ F+ ++S+ELRSPL +IGF+DL++ + +Y Sbjct: 176 RYREELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIEQDVEEKCFERIGEY 235 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I A+ LL ++ +ILDLA +D G M+L + L++LL + + E + I Sbjct: 236 AGLIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSI 295 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 ++ D F AD +RL Q+ +LSNA+ FSS+GS + + +A+ G+ + V + G Sbjct: 296 ELDCDPI--RFEADERRLHQVLHNLLSNAIKFSSEGSRIGV-SAQGQGEIVEIVVWDEGR 352 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +F F V + G GLGL+IV+ ++LHGG VS+ S + + Sbjct: 353 GIAPDWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSV 412 Query: 787 RIPS 790 R+P+ Sbjct: 413 RLPA 416 >gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 1007 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D E+ + E EA +A D++K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y L++ + S+ Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +I + I+ DR R+ QI + ++NA+ ++SKGS + A +D G + Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ G I +D VF RF Q G GLGLSI ++ GG V S Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844 >gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 631 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 131/238 (55%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+E E +A+++K++F+ ++S+E+R+PL I+GF+++L ++ + +Y + I Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPV---EMREYADIIE 454 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +LL L+NDILDL+ ++AG S+I +N + E++QS+ ++ +++ + Sbjct: 455 TNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTER 514 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 F D+ RL+Q+ + ++NA+ F+ G+ + D F V + G + + Sbjct: 515 LPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGMSNEQ 574 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 C+ VF RFV + +G GLGLSI + + GG + + S + +T +P ++ Sbjct: 575 CEHVFERFVK--YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630 >gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1625 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 144/653 (22%), Positives = 278/653 (42%), Gaps = 71/653 (10%) Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226 + L + G ++++ L + L ++ + +S++ V+ D GD+ + Sbjct: 511 KALRMIGTHTDITRRKLAEESLREQEFFYRSILESINDAVFLTDAQGDLTFV-------C 563 Query: 227 ETEGIVFQKAIGESRKLFKEE--IKKRMISSSALEKNF-------CETVSTLEHGNNKSY 277 ++F ++ E ++ E + R+I S L ++ C + H Sbjct: 564 PNAHVIFGRSRQELLEMANIEHVLGSRLIKSGELVEDEQEISNRECAIKDSRGHWRYLLV 623 Query: 278 KIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329 I R+ E G+ + DV+++ D T E I+ N I I D+ L Sbjct: 624 NIKRLPEQLHEKGLYLYCCRDVTEKKKTEDTFRQTLERYRLIVENANEGIRILDRQARLS 683 Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389 F NRS + L + ++ + +F+ ++ W+ K Y+ H+ Sbjct: 684 FANRSMALM----LGYSPEKVTDHSIWDFIHPEDQDKFNRIWENRKSGKAEKYELRLIHR 739 Query: 390 DTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443 NG T+ +V+S P G+ + ++T + LE + ++ Q E + + Sbjct: 740 ------NGSTVWTLVSSTPLFKDKEFNGSFALVADITEKKHLEEE----LRKQQEILTSM 789 Query: 444 SEGVAVFG----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE-----S 494 E V G D R + E N +P I+ + YY E S Sbjct: 790 EEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNH-NPTLSSELISKSLECYYKEDRSRVS 848 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT----FVNVTDSVR 550 + + A ++D E + L + + P+ ++ ++ +++T+ + Sbjct: 849 NAFQACAEKGVAYDQEFPFVSARGRRL---WVRTAAWPVYDSGRIVRVAGHIMDITELKQ 905 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 ++ L E + ++A K+ F+ ++S+E+R+P+ +IG TDLL ++ L +Q Sbjct: 906 SQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTE---LRPEQRSLA 962 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I +S LL L+NDILD + ++AG ++L L LL ++ +A + E + + Sbjct: 963 ESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELI 1022 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725 + D + + V D RL QI + ++ NA+ F+ +G V+ + + D+ +F+V++ Sbjct: 1023 CLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVRVQRSEVSADDVLLLFTVQD 1082 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IPED +FN+F R+ G GLGL+I + GG V + S Sbjct: 1083 TGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQS 1135 >gi|307151600|ref|YP_003886984.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981828|gb|ADN13709.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 855 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 5/243 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ +++T R + L KN L + + +K+ F +S+EL+SPLT++IG + LLK K Sbjct: 318 LVMALDITQHQRVCQDLALKNSELIQLNRLKDEFFTCISHELKSPLTSVIGLSSLLKEQK 377 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 LGSLN +Q +Y E I S L+ LVND+LDL ++ G +KL + + + + Q+ Sbjct: 378 LGSLNERQVRYSELIYHSGRQLMMLVNDLLDLTRLETGQLKLKPIPLDVKTICQQAYQTF 437 Query: 659 ATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + I + D + VAD R+ Q+ +L NA+ S+ + LK R Sbjct: 438 EERNKGKIDFPIPFTLEIDPGIEQIVADELRMQQMLFHLLDNAIKLSNSDGEIGLKVNRW 497 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F+V + G IPED +F ++ S N Q G GLGL + + HGG +S Sbjct: 498 ENWLAFTVWDTGLGIPEDSQNLLFQQWQSQENPLSEQLEGTGLGLVLTQRLAKAHGGEIS 557 Query: 774 ISS 776 S Sbjct: 558 FIS 560 >gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] Length = 1007 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D E+ + E EA +A D++K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y L++ + S+ Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +I + I+ DR R+ QI + ++NA+ ++SKGS + A +D G + Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ G I +D VF RF Q G GLGLSI ++ GG V S Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844 >gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 867 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 142/256 (55%), Gaps = 9/256 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q++ + N D + A R ++AL +AD++K++F+ ++S+E+R+PL I+GF+DLLK Sbjct: 619 CQSIQRYKNTEDELIAAR-----DKAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 672 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + G + + Q+VE I+ + T+LL L+NDILDL+ +++G M +S+ L ++ +V Sbjct: 673 DLE-GFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVY 731 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S M + +G S + D RL Q+ + +++NA F++KG ++ D Sbjct: 732 DSQRLSMPQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVED 791 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +G + V++ GS I ++ +F RF + Q G GLGLSI ++ + G ++++ Sbjct: 792 SGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQTIVERLNGTITVT 849 Query: 776 SSDEGVTTINCRIPSK 791 S T RI K Sbjct: 850 SKLGKGTRFEVRISDK 865 >gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] Length = 1116 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 133/245 (54%), Gaps = 5/245 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R + ALTEK L +A + K+ F+ ++S+ELR+PL + + LL +K G+L+++Q + Sbjct: 422 LRVQDALTEKARQLTQASQFKSEFLANMSHELRTPLNSTLILAKLLSDNKPGNLSTEQVK 481 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I A+ + LL L+NDILDLA ++AG + + + L + + + E + Sbjct: 482 YAQTIYAAGSDLLALINDILDLAKIEAGQATVEVEQVTIASTLQRLLEPMRPMAVEKGLV 541 Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 +++ D + + D +RL Q+ +LSNA+ F+ +GS V ++ +R D + F+V + Sbjct: 542 LELDIDAAVPATMQTDAKRLGQVLKNLLSNALKFTERGS-VAMRVSRSGRDRVRFAVHDT 600 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G +P + + +F F R+ G GLGLSI L GG ++++S+ + Sbjct: 601 GIGVPAEQQELIFEAFRQADGSTHRKYGGTGLGLSISRDLAELLGGKLTVTSTAGQGSVF 660 Query: 785 NCRIP 789 +P Sbjct: 661 TLEVP 665 >gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 664 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 130/240 (54%), Gaps = 5/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613 LT + E A K+ F+ ++S+ELR+PL ++GF+++LKT G L +K+ +Y + I Sbjct: 426 LTREKERAEAASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYADDI 485 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 AS LL+L+NDILD++ ++AG +L+ L ++ V + + + E ++ ++V + Sbjct: 486 HASGHHLLSLINDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQVEL 545 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D L V D + + Q+ +L+NA+ F+ G V L + V +NG IPE Sbjct: 546 PDPALVVNV-DVRAIKQVLINLLANAITFTPAGGRVRLGVRVHDDGVAMYVADNGIGIPE 604 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + F + A R R G GLGL++ + + LH G +++ S TT+ R+P+ Sbjct: 605 EELPRLLRPFEQIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRLPA 664 >gi|288958788|ref|YP_003449129.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911096|dbj|BAI72585.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 413 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 124/241 (51%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 L++ EA RKAD K F+ +S+ELR+PL +IIGF D+L +G L +YV+ I Sbjct: 170 LSDALEAARKADRAKLDFLAVMSHELRTPLNSIIGFADVLAGEGMGKLGHPDYLEYVKLI 229 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL +VN+ILD G +++ S + + LL +A K + + V Sbjct: 230 EESGRSLLTMVNNILDYTRGSTGSIEIQDSDVNIPQLLTGCADMLAPKAAGKGLALAVRP 289 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 DR+RL ++ +L NA+ F+ G TV + A D G F+ +V+++G IP Sbjct: 290 CPAF-RMRVDRRRLREMVLNLLDNAVKFTQPGGTVTV-AVEDRGAFVGLTVRDDGPGIPG 347 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D+ +FN F H RR GVGLGL IV F LHGG V + S+ T + +P Sbjct: 348 DLMGRIFNPFTQAEHSLVRRHEGVGLGLPIVRRFAELHGGGVELDSAPGRGTMVTILLPK 407 Query: 791 K 791 + Sbjct: 408 E 408 >gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 632 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 132/222 (59%), Gaps = 13/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ ++VE I +++ Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 +LL L++DILDLA +++G M ++ + + +++NE+ S KM +N+ + D Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKM-PDNVALIAPQDSPE 505 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +DR RL Q+ S L+NA+ ++S+G + A GD I FSV + G + +++ Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF ++G ++G GLGLSI E+ +N GG + ++S Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601 >gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1238 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 8/259 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +++++ AE+ L E+ E L A+ K+ F+ ++S+ELR+PL +I+ +D L+ + G Sbjct: 574 VIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAG 633 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L KQ+++ + + + + LL L+ND+LDLA V++G M+L I + D+L E+ S+ Sbjct: 634 NLTEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRP 693 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 +R+ + + + DR RL QI +LSNA+ F+ G + +++ + Sbjct: 694 MAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFTDHGDVTLSVSSQGRQED 753 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FSV+++G I + +F F RR G GLGL+I + G + Sbjct: 754 ERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQLVLALDGDI 813 Query: 773 SISSSDEGVTTINCRIPSK 791 S+ S+ +T R+P K Sbjct: 814 SLQSAPGLGSTFTVRLPVK 832 >gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 538 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 147/270 (54%), Gaps = 9/270 (3%) Query: 530 IIPLPNAQTMLT------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +I + A T LT F +T++ + + + + N +++ + +K+ F+ +S+ELR+P Sbjct: 255 LISIIIAATFLTVILLTYFAILTNARKMIKTMEQDNIKIKELERLKSEFLATMSHELRTP 314 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +IIGF ++ G +N +Q + + + +SS LLNL+NDILD++ ++AG M + Sbjct: 315 LNSIIGFVSMILQGISGDINEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGKMSFSKD 374 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + D+++EV Q+++ + + +++ ++ +D+ R+ QI ++SNA+ F+ Sbjct: 375 RFNIKDVISEVVQNVSPLISKKEVKLITEIPDEIPEVYSDKTRVFQILLNLVSNAIKFTE 434 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 KG + +K D SV + G I E+ +++F F +S + R + +G GLGL + Sbjct: 435 KGE-IRIKCEVDGDKLKISVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLS 493 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + + L GG + + S +T +P K Sbjct: 494 KKLVTLLGGEIWVESEYGKGSTFTFTLPLK 523 >gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1358 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 23/267 (8%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ AE L E A + K++F+ ++S+ELR+P+ ++G LL + L Sbjct: 929 MDITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATPL--- 985 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q YV+ A+ + L L+ D+LDLA V++G + + N L EV + + Sbjct: 986 DPEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAVLRPEA 1045 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 I ++ +DG G+ + D QR+ Q+ I+ NA+ F+ +G +L + Sbjct: 1046 DRKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDRGHVRLLARFEPSAGPSAT 1105 Query: 719 --------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 +V++ G IP DM ++F F V +A + G GLGLSIV Sbjct: 1106 AEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGLGLSIVR 1165 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 ++L G VS++S + TT+ R+P Sbjct: 1166 RIVDLMEGEVSMTSEEGRGTTVTLRLP 1192 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K F ++S+ELR+PLT ++G + L S + + + + ++ +L V+ Sbjct: 192 DVLKTRFFANISHELRTPLTLLLGPLERLLAET--SEDDEHRHSLFTMLRNARLLHQHVD 249 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LDL+ VDAG M+ ++ L+ L T + + V + +L + V D Sbjct: 250 DMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQRGMHYGVQAPLRLDAQV-DTD 308 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 + +I +LSN+ F+ G +V + R + + SV ++G +P + +VF R+ + Sbjct: 309 KYRRILLNLLSNSFKFTPDGGSVSVTLERQGDEALLSVSDDGPGVPAHLRGAVFERYRQS 368 Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RG G GLGL+IV+ F LHGG S+ EG R+P Sbjct: 369 GEGARGLHGGSGLGLAIVKEFAELHGGTTSVGQGAEGGALFQVRLP 414 >gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697] Length = 867 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 142/256 (55%), Gaps = 9/256 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q++ + N D + A R ++AL +AD++K++F+ ++S+E+R+PL I+GF+DLLK Sbjct: 619 CQSIQRYKNTEDELIAAR-----DKAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 672 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + G + + Q+VE I+ + T+LL L+NDILDL+ +++G M +S+ L ++ +V Sbjct: 673 DLE-GFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVY 731 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S M + +G S + D RL Q+ + +++NA F++KG ++ D Sbjct: 732 DSQRLSMPQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVED 791 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +G + V++ GS I ++ +F RF + Q G GLGLSI ++ + G ++++ Sbjct: 792 SGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQTIVERLNGTITVT 849 Query: 776 SSDEGVTTINCRIPSK 791 S T RI K Sbjct: 850 SKLGKGTHFEVRISDK 865 >gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 935 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 40/285 (14%) Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590 V + +R+E AL + LR A K+ F+ ++S+E+R+P+ +IG+ Sbjct: 546 VDERIRSENALRRSEDELRAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGY 605 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +DLL + + +Q Y++ I A S LL L+NDILDL+ ++AG M+L YS + + L Sbjct: 606 SDLLSNT---VKDPQQRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRL 662 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++V+ + E I ++V D K+ + + D RL Q+ ++ NA+ F+ +G + Sbjct: 663 LSDVRHIFDLRATEQGISLEVSVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTV 722 Query: 710 LKAA--RDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 A R + + + +V + G IP D + +F+ F + Sbjct: 723 RATATPRKSSEKQPVEETASEVDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQN 782 Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RR G GLGL+I + + GG + + S +T ++P E Sbjct: 783 TRRYGGTGLGLAISRKLVRMMGGELQVESEPGAGSTFTVKLPRVE 827 >gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 882 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 121/242 (50%), Gaps = 12/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R E L + A A K+ F+ +S+E+R+P+ ++G DLL + +L Sbjct: 379 DVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKT---ALT 435 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV+ S LLNL+NDILDL+ V+A + L + L+D L + + +A K Sbjct: 436 PEQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQ 495 Query: 664 ENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 E I I I+ V D RL Q+ +L NA+ F+ G V LK RD + Sbjct: 496 EKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAGQ-VSLKVERDADGSVPT 554 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSV + G I D VF RF RR G GLGL+I + + L GG + ++ Sbjct: 555 ALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGGRIGVT 614 Query: 776 SS 777 S+ Sbjct: 615 ST 616 >gi|325921438|ref|ZP_08183294.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548080|gb|EGD19078.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 291 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL++I+ T LL+ G LN++QS+ V ++S Sbjct: 44 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLSSILSITRLLEDGMDGPLNAEQSKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ L +V+D+LDLA ++AG + ++ L DL + ++ + + Sbjct: 104 ASARELTEMVDDLLDLAKIEAGRIAISPGWFDLMDLFSALRGMFRPLTDAGSTTLIFEDP 163 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + F V++ G IP ++ Sbjct: 164 PALPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAEL 223 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F FV Q+R G GLGL+I + F L GG V I+S Sbjct: 224 HEALFEDFVQVDSPLQKRLTGTGLGLAICKRFAELLGGRVGINS 267 >gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 923 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 137/261 (52%), Gaps = 10/261 (3%) Query: 542 FVNVTDSVRAE-RALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + ++ D +RA R L NE A +A + K++F+ ++S+ELR+PL IIG++++ Sbjct: 395 YGSMEDKIRARTRELQMANEELSVARVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEM 454 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ L +++ + ++ I + LL L+NDILDL+ ++AG M++ + + L+NE Sbjct: 455 LQEDALDKGDAEPLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNE 514 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 V + +N ++++ GSF +D ++ Q ++SNA F+SKG ++ Sbjct: 515 VMSIVQPLAEKNGNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFTSKGKVTLIVER 574 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 +F V + G + E+ +F F +R G GLGL+I + F N GG Sbjct: 575 DAQASVVFRVSDTGLGMTEEQLGRLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQ 634 Query: 772 VSISSSDEGVTTINCRIPSKE 792 +S+ S+ + +T +P ++ Sbjct: 635 ISVQSAPDAGSTFTITLPDQQ 655 >gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 1045 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 133/236 (56%), Gaps = 5/236 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ +L Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--NL 714 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ G RD+ F Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFY 833 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S + Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDSME 887 >gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 683 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ +++ F+ +S+EL +PLT +IG + L LG L+ +Q Y++ I S L Sbjct: 443 AAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIHDSGEHL 502 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVISDGKLG 678 L ++NDILDL+ ++AG LN S L ++ + +S+ K + N+ + + D Sbjct: 503 LEMINDILDLSQIEAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQIDPSRD 562 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F AD +R+ QI S +L+NA+ F+ + V L+ ++ IF V++ G I E+ + Sbjct: 563 RFTADAERVAQILSNLLTNAIKFTPESGNVTLRLWVEDDTAIFQVEDTGIGIREEQLPLL 622 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F +F + +R + G GLGL++ + + LH G + + S+ Sbjct: 623 FEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVEST 663 >gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 1007 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D E+ + E EA +A D++K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y L++ + S+ Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +I + I+ DR R+ QI + ++NA+ ++SKGS + A +D G + Sbjct: 731 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ G I +D VF RF Q G GLGLSI ++ GG V S Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844 >gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 385 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 2/251 (0%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VTD V A+R L+ A A + K++F+ +S+ELRSPL IIGF +++ LG Sbjct: 123 TVQDVTDRVSADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLG 182 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + +Y E I S T LL L++DILDL+ + AG M L+ + +++L + A Sbjct: 183 PTDPRYFEYAEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAA 242 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + AD RL QI +++NA+ F+ G T+ + A + Sbjct: 243 NLSTAQLELVNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTDAVL 302 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G + FV + R G GLGLSI +LHGG ++I S Sbjct: 303 IKVSDTGIGMTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVK 362 Query: 779 EGVTTINCRIP 789 TT+ +P Sbjct: 363 GTGTTVTIHLP 373 >gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca] Length = 1064 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 12/259 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R + LT KN L + + +K+ F+ +S+EL++PLT ++G + LLK LG L+ Sbjct: 327 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 386 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++Y + I S L+ +VNDILDL ++ G ++L + + + + +++ Sbjct: 387 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAVLHLHQ 446 Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + +I+ S G L + AD RL Q+ ++SNA F+ G ++ L+ Sbjct: 447 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGSMGLRVN 506 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R +F+V + G IPE +F +F + + Q G GLGL + + LHGG Sbjct: 507 RWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLVLCQRLARLHGGD 566 Query: 772 VSISSSDEGVTTINCRIPS 790 +S S T +P Sbjct: 567 ISFISHKGKGTEFTLLLPP 585 >gi|300867078|ref|ZP_07111745.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334909|emb|CBN56911.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1214 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 148/323 (45%), Gaps = 30/323 (9%) Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 IA + + + W AA ++ + QG D ++ PL T++ Sbjct: 338 IAQPLAFSTSTAPSWCAIAAKPDNYTCTSPAHQG-----KDRTWQFVKQPLSETLTLVLA 392 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +VT+ + L KN L + + +K+ F+ +S+EL++PLT ++G + LLK +G L Sbjct: 393 QDVTEEQLVAKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDRAIGEL 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---------- 652 N +Q++Y + I S L+ +VNDILDL ++ G M+L + + + + Sbjct: 453 NDRQARYAKLIHQSGRHLMTVVNDILDLTRMETGQMELIVEPVQIAAVCDRAFEGAKLLQ 512 Query: 653 --EVKQSIATKMHENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMD 700 E K + A N SD L VAD RL Q+ +LSNA+ Sbjct: 513 QQEDKPTAARDDPTNRDSTSGKSDSPIDFTLEIESGLAHIVADELRLRQMLVNLLSNALK 572 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 F++ G+ + LK G F+V + G IP D +F +F RR G GLGL Sbjct: 573 FTAPGAAIGLKVNHWEGWIAFTVWDTGIGIPADKQHLIFQKFQQLESPLTRRFQGTGLGL 632 Query: 759 SIVESFINLHGGHVS-ISSSDEG 780 + + LHGG VS ISS +G Sbjct: 633 VLTQRLARLHGGDVSFISSEGQG 655 >gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy] gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy] Length = 816 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 10/246 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+G ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA + R Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291 Query: 671 VISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 V S A D ++ + ILSNA+ F+ + + V ++ A+ N + +++NG Sbjct: 292 VFSMDLPDELQAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNG 351 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 S IP D+C+++F RF R G GLGLSI + F+ LHGG + ++ G Sbjct: 352 SGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFT 411 Query: 786 CRIPSK 791 +P K Sbjct: 412 IELPLK 417 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 ++KA++ + FV H S++L++PL + ++ LG + S+QS+ Y+ + ++ + Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674 L++ +L A +G + TI + L+ ++ Q++ ++ + + V++ Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +L L ++F+ +L N++ + I+ ++ F F V ++G I + Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + R + G+GLSI + + GG +S+ S Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794 >gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 1202 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 11/238 (4%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 D +RA+ L E L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 466 ADLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKM 662 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ ++ L E+ + +A Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVNVELETVSIDATLQSLEELFKPLAGAK 585 Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 H + + R+ + D + V+D QR+ QI +LSNA+ F++ G + A D+ Sbjct: 586 HLSLVFDRLPGVPD----TMVSDGQRVTQILRNLLSNAVKFTAHGEVALSVAPADDDMLR 641 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V+++G IP D + +F F + Q G GLGLSI F L GG ++++S Sbjct: 642 IDVRDSGIGIPADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699 >gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby] gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby] Length = 816 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 10/246 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+G ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA + R Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291 Query: 671 VISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 V S A D ++ + ILSNA+ F+ + + V ++ A+ N + +++NG Sbjct: 292 VFSMDLPDELQAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNG 351 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 S IP D+C+++F RF R G GLGLSI + F+ LHGG + ++ G Sbjct: 352 SGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFT 411 Query: 786 CRIPSK 791 +P K Sbjct: 412 IELPLK 417 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 ++KA++ + FV H S++L++PL + ++ LG + S+QS+ Y+ + ++ + Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674 L++ +L A +G + TI + L+ ++ Q++ ++ + + V++ Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +L L ++F+ +L N++ + I+ ++ F F V ++G I + Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + R + G+GLSI + + GG +S+ S Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794 >gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 511 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF+++LK G N Sbjct: 243 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHANPAYR 302 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I +S LL L+N+ILDL+ V+AG +L ++ L + E + + + + +I Sbjct: 303 DYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQKRDI 362 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 R+ + + L AD + + Q+ +L+NA+ F+ +G V +K G +I ++K+ Sbjct: 363 RMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYI-AIKD 421 Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 NG IPED V + F A + G GLGL IV+ + LHGG + S EG Sbjct: 422 NGPGIPEDEIAVVMSSFGRGMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVREGTD 481 Query: 783 TI 784 I Sbjct: 482 AI 483 >gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM 17393] Length = 1045 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 5/245 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E L E +++ +K++F+ ++S+E+R+PL I+GF+ +L + Sbjct: 662 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADT---EEQE 718 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I ++T+LL LV DIL+L+ +++G ++ +S + LN L E+++S + Sbjct: 719 EKEEYINIIENNNTLLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQKN 778 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + I+ I + + +R RL Q+ + +L+NAM F+ GS +D F V Sbjct: 779 EAVPIRYIPEMPDCTVNIERNRLTQVMTNMLNNAMKFTYSGSVTFGYRLKDTDSLYFYVT 838 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G I ED +VF RFV Q G GLGLSI +S + GG + + S +T Sbjct: 839 DTGCGIEEDKKDTVFGRFVKLDSFSQ--GTGLGLSICQSVVENLGGSIGVESEPGKGSTF 896 Query: 785 NCRIP 789 +P Sbjct: 897 WFTLP 901 >gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 586 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A++KAD+I+ FV +VS+ELR+P+T I G+ + L + L ++ +++ I + L Sbjct: 351 AMKKADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHADRL 410 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +LV D+L L+ +++G + + +++ D + + ++ + E I +++ S + S Sbjct: 411 SDLVRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPV-SA 469 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +ADR RL Q+ +L NA+ +S +G + ++AA + SV++NG IPE +F Sbjct: 470 MADRGRLDQVLINLLENAIKYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLPRLFE 529 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 RF V A +R G GLGLSIV+ + HGG V + S+ Sbjct: 530 RFYRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVEST 568 >gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1164 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L E+ E L+++ + K+ F+ ++S+ELR+PL + + LL + +L+ +Q ++ Sbjct: 476 AQTQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSPEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ + L++ ++ + + K Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENASVPRLVDGLRSLFQPLTQDKGLEFK 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V + G DRQR+ QI +LSNA+ F+ KG + +A+ F+V+++G Sbjct: 596 VELQPGAPQMLFTDRQRVEQILKNLLSNAVKFTEKGQVSLTVSAQPGAGIAFAVQDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +D +S+F F RR G GLGLSI L GG +S+SS Sbjct: 656 IAQDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSISVSS 704 >gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris] gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris] Length = 816 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 134/247 (54%), Gaps = 12/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+G ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667 I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA ++ E Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + +L + + D ++ + ILSNA+ F+ + + V ++ A+ N + +++N Sbjct: 292 VFSMDLPDELQAQM-DPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDN 350 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 GS IP D+C+++F RF R G GLGLSI + F+ LHGG + ++ G Sbjct: 351 GSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410 Query: 785 NCRIPSK 791 +P K Sbjct: 411 TIELPLK 417 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/223 (20%), Positives = 106/223 (47%), Gaps = 22/223 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 ++KA++ + FV H S++L++PL + ++ LG + S+QS+ Y+ + ++ + Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674 L++ +L A +G + TI + L+ ++ Q++ ++ + + +++ Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPILNT 699 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +L L ++F+ +L N++ + I+ ++ F F V ++G I + Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + R + G+GLSI + + GG +S+ S Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794 >gi|54294995|ref|YP_127410.1| sensor histidine kinase [Legionella pneumophila str. Lens] gi|53754827|emb|CAH16314.1| sensor histidine kinase [Legionella pneumophila str. Lens] Length = 816 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 12/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+G ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK--KLPSFVQNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667 +I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA ++ E + Sbjct: 235 RHIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + +L + + D ++ + ILSNA+ F+ + + V ++ + N + +++N Sbjct: 292 VFSMDLPDELQAQI-DPDKMQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP D+C+++F RF R G GLGLSI + F+ LHGG + + G Sbjct: 351 GPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGDARNGGAIF 410 Query: 785 NCRIPSK 791 +P K Sbjct: 411 TIELPLK 417 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 107/223 (47%), Gaps = 22/223 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 ++KA++ + FV H S++L++PL + ++ LG + S+QS+ Y+ + ++ + Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674 L++ +L A +G + TI + L+ ++ Q++ ++ + + V++ Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699 Query: 675 GKLGSFVADRQRLLQIFSKILSNAM-DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +L L ++F+ +L N++ SK +I+ + + F V ++G I + Sbjct: 700 CELP--------LREVFTALLDNSIRHHHSKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + R + G+GLSI + + GG +S+ S Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794 >gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1025 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 11/239 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD AE+AL + E A K F+ +S+E+R+P+ +IGFT LL L + Sbjct: 625 ITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLL----LQNPRE 680 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q +Y++ + S LL L+NDILD + ++AG ++ + L DL+ ++ ++ + E Sbjct: 681 DQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQRAIE 740 Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFI- 720 I++K++ D L + + D RL QI S ++SNA+ F+S G V+ + +R+N I Sbjct: 741 KGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSVGKVVVSASLVSRNNEYTIV 800 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F VK+ G IP + +++F F + R+ G GLGL+I + + + G + + S Sbjct: 801 SFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQLDS 859 >gi|182412780|ref|YP_001817846.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839994|gb|ACB74246.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 734 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L E+ A KN+F+ ++S+E+R+P+ I+GF+DLL T +SK Q V Sbjct: 214 ERLLAEQAIRAESAAREKNAFLANMSHEIRTPMNAILGFSDLLATEL--PADSKARQRVR 271 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+T LL L+NDILDL+ +DAG+++L+ L +L + + A + + ++ Sbjct: 272 AIRESATSLLQLINDILDLSKIDAGVVELHPEPTDLRELSDFMHTVFAQQAARKTLVLEC 331 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFIFSV 723 D L + + DR RL QI ++ NA+ F+ G TV L A R +G V Sbjct: 332 EIDPALPHALMLDRSRLRQIVVNLIGNAIKFTEHG-TVKLGIRWAHHPANRGSGTLEIEV 390 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + + +F FV + R G+++G GLGLSIVE GG V++ S Sbjct: 391 ADTGVGIPPEKQREIFQPFVQVDPQRAGEKQGSGLGLSIVERITQRMGGTVTLQS 445 >gi|13475583|ref|NP_107147.1| two-component sensor [Mesorhizobium loti MAFF303099] gi|14026335|dbj|BAB52933.1| two-component sensor [Mesorhizobium loti MAFF303099] Length = 638 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T + R +TE+ ++ ++KN F+ VS+ELR+PLT+I G L+ +G L Sbjct: 122 KITGVITYNREITEQ----KRNAQLKNDFISTVSHELRTPLTSIRGSLGLIAAGVVGELP 177 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K + V +S L+ L+NDILD+ +++G++ + + ++ + + + M Sbjct: 178 PKAANLVNIAHTNSERLVLLINDILDMEKIESGVIAFKIKQMPVRPIMEQAIAASSNYMA 237 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E+ IRI ++ D D RL Q+ + +LSNA+ FS TV++K R + D + S Sbjct: 238 ESRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSHADGTVMVKLQRRDRDMLRIS 297 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G+ IPE +F +F R+ G GLGLSIV++ + GG VS + +E Sbjct: 298 VIDQGAGIPEAFRSRIFGKFEQADASSTRKKGGTGLGLSIVKTIVEKLGGAVSFETEEEK 357 Query: 781 VTTINC 786 T+ + Sbjct: 358 GTSFHV 363 >gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 609 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 131/242 (54%), Gaps = 3/242 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L+ N+ L + +++KN F+ + S+E+R+PL++IIGFT+LL +Q +Y+ Sbjct: 217 QQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEPTIERQREYLNI 276 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S LL L+NDILDL+ ++A +++ + + + L + V + K ++R+ + Sbjct: 277 IQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEKAANKDLRLCLE 336 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D + + VAD RL Q+ +L NA+ F+SKGS V L+ F+V + GS I + Sbjct: 337 IDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS-VGLQVVAKGISVHFTVWDTGSGISQ 395 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F + ++ A G G GLGL++ +HGG V + S + + +P Sbjct: 396 EDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESEVDSGSRFTLVLPL 455 Query: 791 KE 792 ++ Sbjct: 456 QQ 457 >gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 358 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +NE L +A +K+ F+ ++S+ELR+PL I+G T+ L+ G +N +Q + ++ + S+ Sbjct: 98 RNEELIRAKRLKDEFLANMSHELRTPLNAILGMTEGLQEEVFGPVNDRQLKALQTVERSA 157 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LL L+NDILD+A +++G ++L S + L I + + I++ V KL Sbjct: 158 SHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKL 217 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARD-NGD---FIFSVKNNGSS 729 + D +R+ Q+ +L+NA+ F+ +G + VIL R+ G+ FSV++ G Sbjct: 218 PDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIG 277 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + K +F F + +A Q +G GLGL++ + + LHGG V ++S Sbjct: 278 ISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTS 326 >gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1041 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++D ER L E +++ +K++F+ ++S+E+R+PL I+GF+++L + + L Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDV--LEE 714 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ +Y E I ++ +LL L+NDILDL+ ++AG ++ YS + +N LL+++++S++ ++ Sbjct: 715 KQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVN 773 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 N+R+ K + RL+Q+ +L+NA+ F+ +GS + + F V Sbjct: 774 ENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVS 833 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I + +++F+RFV Q G GLGLSI ++ GG + + S Sbjct: 834 DTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICRMIVDHLGGEMGVES 883 >gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7] gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7] Length = 1118 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 137/245 (55%), Gaps = 18/245 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + AE+ L E E +A K+ F+ +S+E+R+P+ ++G +++K +KL + +Q+ Sbjct: 587 IEAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKL---DQQQAH 643 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIATKMHENN 666 ++E +S+ LLN++NDILD + ++AG KLN +I N LL EV +S A K+ +NN Sbjct: 644 HIELAQSSAESLLNIINDILDFSKMEAG--KLNIDSIQFNLPKLLGEVVESFALKVEQNN 701 Query: 667 IRIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-- 721 K+I D + ++D RL QI + ++ NA+ F+ G +I+ D+ D F Sbjct: 702 --TKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAFLE 759 Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 SV + G I ++ S+FN F R+ G GLGL+IV+ L G V+++S + Sbjct: 760 CSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNSVE 819 Query: 779 -EGVT 782 EG T Sbjct: 820 GEGST 824 >gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1041 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++D ER L E +++ +K++F+ ++S+E+R+PL I+GF+++L + + L Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDV--LEE 714 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ +Y E I ++ +LL L+NDILDL+ ++AG ++ YS + +N LL+++++S++ ++ Sbjct: 715 KQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVN 773 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 N+R+ K + RL+Q+ +L+NA+ F+ +GS + + F V Sbjct: 774 ENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVS 833 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I + +++F+RFV Q G GLGLSI ++ GG + + S Sbjct: 834 DTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICRMIVDHLGGEMGVES 883 >gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 1165 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 141/248 (56%), Gaps = 9/248 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A++ L ++ E L+++ + K+ F+ ++S+ELR+PL + + LL + +L+++Q ++ Sbjct: 475 QAQQELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 534 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENN 666 E I ++ LLNL+NDILD++ V+AG +++ N S L D L + + +A + Sbjct: 535 AESIYSAGNDLLNLINDILDISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLAAD-RKLG 593 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725 +++V D F DRQRL QI +LSNA+ F+ +G V L +R G+ I FSV++ Sbjct: 594 FQVQVQPDAPAMLFT-DRQRLEQILKNLLSNAIKFTEQGE-VSLSVSRAPGEGIAFSVRD 651 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G I D +S+F F RR G GLGLSI L GG++S++S+ +T Sbjct: 652 SGIGIAPDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVTSAPGKGST 711 Query: 784 INCRIPSK 791 +P + Sbjct: 712 FTLVLPEQ 719 >gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1118 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 126/525 (24%), Positives = 227/525 (43%), Gaps = 80/525 (15%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363 IL +L V + I D + + + N F +WE+ L F+ N EL + Sbjct: 320 ILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY--DGT 377 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 + PE++ +++++F + E + W SN R + + ++T Sbjct: 378 QTPEEI--YDFRKHLFET-EEPEPIELGWAGGKSVIFDSRRISNDR--ILLTYADITAVR 432 Query: 424 DLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 + E + + L ++ + + +G+A+ DG IK+SN A Sbjct: 433 ERENEVHEARAALEHLGELLRDATHAMPQGLAIV-QDGIIKMSNEAL------------- 478 Query: 477 GTHIRNIAATCSRYYNESDGW----DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 HI I AT Y GW D AA +D + LQG + ++ + +P Sbjct: 479 -AHILEIPAT---YIETGQGWLGMFDFCAARGDFHEDAAEILQGWRDNIA------ARLP 528 Query: 533 LPNA-------------------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 + A + F +VT+ E L + AD K+ F+ Sbjct: 529 ISTAFHVGGERWVNMDATVSKGQHWVALFTDVTELKGREEELRQLLSRAEAADRAKSEFL 588 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 ++S+E+R+P+ ++G +LL + +L+++Q +V+ I S LL ++NDILD + + Sbjct: 589 ANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSKI 645 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFS 692 DAG MKL + + + + +V +++ E NI + V + L + + D R QI + Sbjct: 646 DAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVT 705 Query: 693 KILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 ++ NA+ F+ +G + AA +++ G IP + +SVF++F Sbjct: 706 NLVGNAVKFTERGHVFVDVGFQPAAGGEIMACIRIEDTGIGIPSEKLESVFDKFSQVDAS 765 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS--SDEGVTTINCRIP 789 RR G GLGL+I ++L GG++++ S V TIN P Sbjct: 766 STRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTINLPFP 810 >gi|291515688|emb|CBK64898.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 499 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 134/234 (57%), Gaps = 9/234 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E ++D +K++F+ ++S+E+R+PL I+GF+ L+++ +L ++++Y Sbjct: 239 EGQLVVAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQSEELS--QEERAEYCA 296 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + ++S +LL L+NDILD+++++ G ++ NY++ D++ + + T H ++ Sbjct: 297 IVVSNSEMLLTLLNDILDISSLECGKIRFNYAS---EDIVQICQHVMMTTAHTRQRGVEG 353 Query: 672 ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728 +GSF+ D RL QI +L+NA F+S+GS T+ ++ + G+ +FSV + G Sbjct: 354 RFACPVGSFMLTTDAHRLSQILINLLTNAGKFTSEGSITLGVEIDEERGEVLFSVADTGP 413 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 IP D VFNRF +++G GLGL+I + GG + + S+ G T Sbjct: 414 GIPPDKQDLVFNRF-EKLDGNKKKGTGLGLAICRQIAMIVGGRIWVDSAYTGGT 466 >gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 549 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 6/246 (2%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSK 605 R +R L+E + R+AD K++F+ ++S+ELR+PL IIGF+D L G + S+ Sbjct: 298 RMDRTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGIPGHTCQSR 357 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y+ ++ SS LL+L+NDILDL+ ++AG ++ + L L+ E + + K Sbjct: 358 CQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEIVRAKAESK 417 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 NI + + + D +RL QI +LSNA+ F+ +G +IL+A D+G +V + Sbjct: 418 NISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAECDSGQLALTVND 477 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G + ++ F N RR G GLGL + + L GG +S++S TT Sbjct: 478 TGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVTSIPGRGTT 537 Query: 784 INCRIP 789 + +P Sbjct: 538 VTISLP 543 >gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 662 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 18/258 (6%) Query: 548 SVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 S+ E+ L + KNE L++ ++ K++F +S+ELR+PL IIG TDLL N Sbjct: 140 SIELEKELLQLKNEELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLEV---MTNPHH 196 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + Y++ I +S L+ +VND+LD++ +++G M+ + I L ++L + S K + Sbjct: 197 ADYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKG 256 Query: 667 IRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDF 719 I++ V++ + D+ RL QI ++ NA+ F+S+G V + D + Sbjct: 257 IQVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEITFVAPVPSADQAEQ 316 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 I F VK++G I ++ + +F + + + R G GLGLSIV I L GGH+S+ Sbjct: 317 IQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISV 376 Query: 775 SSS-DEGVTTINCRIPSK 791 +S EG T N +P K Sbjct: 377 NSRWGEG-TIFNFVLPLK 393 >gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 603 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L + +++KN F+ + S+E+R+PL++IIGFT LL + +Y+ I +S Sbjct: 223 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNIIQSSGK 282 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL L+NDILDL+ ++A +++ + + + +L V I K +++ + D + Sbjct: 283 HLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLELDPNIK 342 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 +FVAD RL Q+ +L NA+ F+++G TV LK + + F+V + GS I + + Sbjct: 343 TFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQQDSFIHFTVWDTGSGISPENLALL 401 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F + + N+ Q G GLGL + +H G V + S Sbjct: 402 FQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVES 441 >gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 507 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 9/246 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607 ER+ +EA R+A++ K+ F+ +S+ELR+PL I+GF++++ G L S Sbjct: 249 ERSRILSDEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGSPNYK 308 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I +S LL ++N+ILDL+ V+AG LN + L+ + + ++ + + I Sbjct: 309 EYLTDIHSSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAEDKRI 368 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I++ + L + D + L QI +LSNA+ F+ K +IL+ G ++ V + Sbjct: 369 AIQMHFEEGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYV-GVSD 427 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG+ IP+D +V F SNA + +G GLGL IV++ + LH G +SS + T Sbjct: 428 NGAGIPQDEIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGKGTD 487 Query: 784 INCRIP 789 + P Sbjct: 488 VIAIFP 493 >gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 606 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 16/269 (5%) Query: 529 SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 ++ P+ + Q +T V +VT + ER L EA AD K+ F+ +S+E+R+P Sbjct: 186 TVFPVRDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTP 245 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + ++G DL T+ SL+ +Q +Y+E + S+ LL+L+NDILD + ++AG+++L+ Sbjct: 246 MNGVLGMLDLAMTT---SLDEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQ 302 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L+ L+ + + E N+ + IS D RL QI +L NA F+ Sbjct: 303 VFRLSKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFT 362 Query: 703 SKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 +G V +L+ +N FSV++ G I E + +F+ F RR G GL Sbjct: 363 DQGQVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGL 422 Query: 757 GLSIVESFINLHGGHVSI-SSSDEGVTTI 784 GL+I + L GG + + S+ EG T + Sbjct: 423 GLAICKRLTGLMGGDIKVRSTPGEGSTFV 451 >gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 1323 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 15/254 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + + EK + L + + K+ F+ ++S+ELR+PL +++ LL +K G+L KQ +Y Sbjct: 622 ARKLIEEKAKDLELSSKYKSEFLANMSHELRTPLNSLLLLAKLLHENKNGNLTEKQVEYA 681 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I A+ LL L+N++LDL+ V+AG M LN + L L + V+Q+ A E ++++ Sbjct: 682 RTIHAAGADLLELINEVLDLSKVEAGKMVLNIEEMSLKGLASYVEQNFAHVAEEKGLKLR 741 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------- 720 + ++D G DRQR+ QI +LSNAM F+ +G + A G + Sbjct: 742 IELTDSLPGCIRTDRQRVEQIVKNLLSNAMKFTREGEVGVYIARPAAGVVLSHSGVLPHK 801 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 SV + G IPED + +F F R+ G GLGLSIV F L GG + + Sbjct: 802 AIAISVSDTGIGIPEDKQRLIFEAFQQADGTTSRKYGGTGLGLSIVREFTKLLGGEIHLR 861 Query: 776 SSDEGVTTINCRIP 789 S + T + +P Sbjct: 862 SEEGNGCTFSLYLP 875 >gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1599 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 12/256 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++++ +A++ L + E A+ K++F+ ++S+E+R+PLT I+G ++L S++ S Sbjct: 1029 IDISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEML-ASEISSE 1087 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N + + ++ S+ L +++DILDL+ V+AG M+L+ VL+ +L+ V+ A + Sbjct: 1088 NGR--RIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQA 1145 Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 N+R+ K + G + + D RL QI ++ NA+ F+S G + D+ D Sbjct: 1146 ENKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFTSHGQVTLRARPADSQDGSS 1205 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F V++ G IPED +F F ++ + +G GLGL+I L GG+++ Sbjct: 1206 KQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNIN 1265 Query: 774 ISSSDEGVTTINCRIP 789 + S+ +T IP Sbjct: 1266 VESAPGEGSTFVAEIP 1281 >gi|163794230|ref|ZP_02188202.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180398|gb|EDP64919.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 559 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 11/239 (4%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGS 601 RA L+E +R A K+SF+ +S+ELR+PLT IIGF+ +LK + G Sbjct: 300 RANEQLSENAAQVRSALQSAEHATRAKSSFLAGISHELRTPLTAIIGFSQILKIQHRPGK 359 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S++ +Y E I SS LLNLVNDILDL+ +++G +L+ + I L N V+ +A + Sbjct: 360 TKSREQEYAEIIHDSSQHLLNLVNDILDLSKIESGSYELDETWIDLVREANAVRALLAHE 419 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFI 720 I + + +L + D + + QI ++SNA+ F+ +G V L +G + Sbjct: 420 ASRRGIAVSLDLQDQLPALYGDIKGIRQIVINLVSNALKFTDRGGWVRLSMRVESDGGLL 479 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +NG+ IP D S++ F N G GLGL +V+ NLH V + S+ Sbjct: 480 LEISDNGAGIPTDEQSSIWEAFKRARNPGLSTAEGAGLGLHLVKILANLHDAEVGLEST 538 >gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1045 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 131/234 (55%), Gaps = 5/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E L + +++++K++F+ ++S+E+R+PL I+GF+++L ++ L Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ ++ + I ++++LL L+NDILDL+ ++AG ++ Y + +N +L +++QS K Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++I + DR RL Q+ +L+NAM F+ G RD+ F Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFY 833 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K +F RFV Q G GLGLSI E + G + + S Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885 >gi|148548085|ref|YP_001268187.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida F1] gi|148512143|gb|ABQ79003.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 978 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ N + + ++ N+TD +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G + + ++ G + Q+ E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689 +DA M L+Y L+ L + + + +I D KL VA D ++ + Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I +LSNA F+ G + L +R N + +V ++G IP + K +F RF + Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ RG GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I L L+ + + N++ + V++D +L D ++ Q+ + NA++ S+ Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884 Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + D GD + SVK+ G I E +FN F + ++ G+G+GL Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +I + +H G + + G IP+++ Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974 >gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] Length = 657 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + LR A+ K+ F+ ++S+ELR+PL +IIGF LL+ + G LN+ Q++Y E I S Sbjct: 407 DELRAANRHKSQFLANISHELRTPLNSIIGFASLLQENVAGDLNATQTRYAEIIIESGGH 466 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+L+NDIL L +D + KL S + + + + I E ++VI +L Sbjct: 467 LLDLINDILQLVKLDTSVDKLKLSRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDG 526 Query: 680 FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCK 736 + A D Q++ QI +LSNA+ FS G + +KA+ +F+F V +NG I DM + Sbjct: 527 YTAYWDEQKVHQILLNLLSNAVKFSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKE 586 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VF F N++ +G GLGL+I + + +H G + + + G Sbjct: 587 RVFLAFEQADNSYTRIYKGAGLGLAITKDLVEMHSGRIWLEDAPGG 632 >gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 636 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + + +K+ F+ ++S+ELR+PL +I+GF+D+L S + SLN KQ +YV+ I Sbjct: 342 LARVNVQLYEMNRVKSDFLANMSHELRTPLNSILGFSDVL--SDIDSLNDKQKRYVQNIQ 399 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S +LL+++NDILDLA +++G M++ S + ++ + + + E N+ ++ + Sbjct: 400 KSGRLLLDMINDILDLAKIESGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDVH 459 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 DG F D+ +L QI + +LSNA+ F+ +G + + +R+ +V++ G I E+ Sbjct: 460 DGGEPMF-QDQTKLQQILTNLLSNAIKFTPEGGRITCRVSREADMMKLAVEDTGVGIAEE 518 Query: 734 MCKSVFNRFVSNAHRGQR-------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + +F +F A + G GLGLSIV L G + + S +T Sbjct: 519 DREIIFEKFRQGAVSPRNDSLTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTI 578 Query: 787 RIP 789 RIP Sbjct: 579 RIP 581 >gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 600 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+AL + +A K+ F+ +S+ELR+PL IIGF++++ L+ Sbjct: 320 DVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKLD 379 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y I+ S LL++VN ILD++ +++G +L + L+ + K Sbjct: 380 AARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMVLKA 439 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +N I + L D + QI +LSNA+ F+ +G +V + A + + + Sbjct: 440 RDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVEGRELLLR 499 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I +D + N F +++G+R G GLGLSIV+S ++LHGG + + S + Sbjct: 500 VADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVESELDR 559 Query: 781 VTTINCRIP 789 TTI+ R+P Sbjct: 560 GTTISVRLP 568 >gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1057 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R + LT KN L + + +K+ F+ +S+EL++PLT ++G + LLK LG L+ Sbjct: 325 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 384 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++Y + I S L+ +VNDILDL ++ G ++L + + + + +++ Sbjct: 385 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCDRALEAVLHLHQ 444 Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + +I+ S G L + AD RL Q+ ++SNA F+ G + L+ Sbjct: 445 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYMGLRVN 504 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R +F+V + G IPE +F +F + + Q G GLGL + + LHGG Sbjct: 505 RWEDWVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLARLHGGD 564 Query: 772 VSISSSDEGVTTINCRIPS 790 +S S T +P Sbjct: 565 ISFISHQRKGTEFTLLLPP 583 >gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1307 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 135/263 (51%), Gaps = 5/263 (1%) Query: 533 LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 LPN V ++T RAE LT+ +A K F+ +S+E+R+PL IIGF+ Sbjct: 1039 LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFS 1098 Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ K G + N + Y+ I+ S +L+LVND+LD++ ++AG ++ Y + LND Sbjct: 1099 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1158 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L E + + + + I+ +L VAD + + QI ILSNA+ ++ G VI+ Sbjct: 1159 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1218 Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 A + +GD + V++ G + + + F ++ RG+ G GLGL + ++ + Sbjct: 1219 STAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1278 Query: 768 HGGHVSISSSDEGVTTINCRIPS 790 + +I+S+ T + PS Sbjct: 1279 NRARFTINSTPGEGTLVEVAFPS 1301 >gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] Length = 960 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 135/253 (53%), Gaps = 20/253 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N ++ R +T+++E +++K+ V VS+ELR+PL++I+GFT+L+ KL Sbjct: 561 NKVGTIFVHRDITKQHEV----EQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKP-- 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSI 658 KQ +Y++ I + L NL+ND LDL +++G ++ + DL++EV S Sbjct: 615 EKQEKYLKTIHKEANRLTNLINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSE 674 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 +H N+ K I G D +R+ Q+ + I+SNA+ FS G + A ++ Sbjct: 675 KHTLHFINLAEKTIIQG-------DSERIQQVITNIISNAIKFSPNGGDITTTLASNSTS 727 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SVK++G IPE+ K++F +F + N+ R + G GLGL I + + H G +S+ S Sbjct: 728 LFVSVKDDGLGIPENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVES 787 Query: 777 SDEGVTTINCRIP 789 + +T +P Sbjct: 788 KENEGSTFIIELP 800 >gi|74484333|gb|ABA10818.1| bZIP histidine kinase [Pseudomonas putida] Length = 978 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ N + + ++ N+TD +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDRKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G + + ++ G + Q+ E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689 +DA M L+Y L+ L + + + +I D KL VA D ++ + Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I +LSNA F+ G + L +R N + +V ++G IP + K +F RF + Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ RG GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I L L+ + + N++ + V++D +L D ++ Q+ + NA++ S+ Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884 Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + D GD + SVK+ G I E +FN F + ++ G+G+GL Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +I + +H G + + G IP+++ Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974 >gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010] gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010] Length = 929 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF ++T + AE+ L E +A+ K+ F+ ++S+ELR+PL +IG +LL + Sbjct: 265 TFEDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNLLAAT--- 321 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SLN++QS V S+ L L+ND+LDL+ +++G ++L Y L++LL EV + +A Sbjct: 322 SLNARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAEVARGMAG 381 Query: 661 KMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + E + + + + S VA DR RL QI + ++ NA+ F+ KGS ++K Sbjct: 382 RAEEKGLEL-LCPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEKGSITVDMTVIKKTM 440 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 FS+ + G I E +F RF + + + G GLGL+I + L GG + Sbjct: 441 PEATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGRI 500 Query: 773 SISSS 777 +SS+ Sbjct: 501 GVSST 505 >gi|319902902|ref|YP_004162630.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319417933|gb|ADV45044.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 735 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 4/236 (1%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSK 605 +S A + E A+ K+ F+Q++S+E+R+PL I+GF+D++ + + LG + Sbjct: 486 ESEAARKEAEHAREVAEYANRQKSIFLQNMSHEIRTPLNAIVGFSDVVNSEEDLGLTVEE 545 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 ++ Y+ I ++ +L LVND+LDL+ +++G L + ++DL + +SIA+++ + Sbjct: 546 RADYLSLIHTNTELLTTLVNDVLDLSKLESGSYALALAPTCISDLCHATLRSIASRVPDG 605 Query: 666 -NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ D SF+ D RL Q+ + L+NA ++ +GS + +++G +FSV Sbjct: 606 VQLKLDEPEDASFISFLTDAVRLQQVITNFLTNACKYTDRGSITLKYRIQEDGGIVFSVT 665 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I ED + VF RF ++G GLGLSI L GG V + ++ G Sbjct: 666 DTGCGISEDKAEIVFGRF--EKLDTFKQGTGLGLSICRHIAELVGGRVYLDTTYTG 719 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 13/256 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + E AL E E A+ +K F+ ++S+E+R+PL I+G LL+ + SL Sbjct: 677 IDITELKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQT---SL 733 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q +YVE S+ L L+ DILD++ ++AG M L + +L++ V + A Sbjct: 734 EPEQEKYVELSITSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPA 793 Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E +R++ I G V D R+ QI ++ NA+ ++ +G + ARD D Sbjct: 794 REKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGDITLELFARD-ADLCR 852 Query: 722 S------VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 S V + G IP M VF F V +H G GLGL+IV+ + L G +S Sbjct: 853 SECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEIS 912 Query: 774 ISSSDEGVTTINCRIP 789 + S T + +P Sbjct: 913 VQSEPGAGTAVLVSLP 928 >gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum gilvum SL003B-26A1] gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum gilvum SL003B-26A1] Length = 787 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 174/385 (45%), Gaps = 35/385 (9%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-------IRNIAATCSRY 490 + I+ +SE ++ D + + N ++SL E + PG RN T S Sbjct: 390 DAIETISEAFVLWNADNELVICNSNYQSLHNLPEQAVRPGAPYAEVMAAARNSHITTSPL 449 Query: 491 YNESDGWDLFAAIITSFDD-------ERKSLQG----------TLE------LLSDSVLE 527 + + G A+ DD ER++ G TL+ L S+ L Sbjct: 450 HGGTPGAGANASYEAQLDDGRWLQISERRTKDGGFVSVGTDITTLKRHEERLLDSERRLM 509 Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 ++ L ++ L AE+ EK A A+ K+ F+ ++S+ELR+PL I Sbjct: 510 ATVSDLRKSRQTLEMQAQQLVELAEKYAQEKTNA-ENANRAKSEFLANISHELRTPLNAI 568 Query: 588 IGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 IGF+D++ G + S++ ++Y I S T LLN++NDILD++ ++AG M++ + Sbjct: 569 IGFSDIMDRGMFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLG 628 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 + ++ E + I E I + + L + ADR+ L Q+ +LSN + F+ + Sbjct: 629 VEAVVEEAGRIIRAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSNGVKFTPEKG 687 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764 TV L R G F + + G I + + FV N +G GLGL+I S Sbjct: 688 TVRLSVHRAGGLARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGSGLGLAIARSL 747 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + L GG ++I+S T + +P Sbjct: 748 VELQGGTLTIASVPGQGTRVAFTLP 772 >gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 868 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 138/256 (53%), Gaps = 11/256 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VT+ R E L E +A +AD+ K++F+ VS+E+R+PL+ ++G ++L LG+ Sbjct: 339 LFDVTERARGEAILREARKAAEEADQAKSAFLAQVSHEIRNPLSTLLGLSELC----LGT 394 Query: 602 -LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q +++ I +ST +L + ND+LDL+ V+AG ++L L LL + +++ Sbjct: 395 PLQPRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLP 454 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718 + + + + + L + D R+ QI +L+NA+ F +G V L+A +D G Sbjct: 455 QGEAKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDRGR-VELRARKDPQGP 513 Query: 719 FI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ +V++ G I PED+ + VF F + +G+GLGL I GG++ SS Sbjct: 514 WLELAVEDTGQGIEPEDL-RRVFQPFWQASPSTSAQGMGLGLPIALQLTRSMGGNIEASS 572 Query: 777 SDEGVTTINCRIPSKE 792 TT R+P +E Sbjct: 573 LPGSGTTFLVRLPLEE 588 >gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 1141 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 17/255 (6%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT+ + +++++ +E L E+ E + +A+ K F+ +S+ELR+PL +I+ D L Sbjct: 465 QTVCSIIDISERKLSELRLREQAEQISRANRYKTEFLATMSHELRTPLNSILILADQLAE 524 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ G+L +KQ ++ I+ S LL L+NDILDL+ ++AG M LN +++NDL+ ++Q Sbjct: 525 NRQGNLTAKQVEHATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQ 584 Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + + + G + D RL QI +LSNA F+ GS V L+ + Sbjct: 585 NFLPVAENRQLTFQTTKEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGS-VHLRVYQP 643 Query: 716 NG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761 +V + G +P D +F F +G +R G GLGLSI Sbjct: 644 QSVPPGMDSLPQHTLAMAVTDTGCGMPSDKLDRIFEAF-EQLEQGSKRQFGGSGLGLSIS 702 Query: 762 ESFINLHGGHVSISS 776 +L GG + + S Sbjct: 703 RQLAHLLGGTIDVRS 717 >gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] Length = 756 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 7/272 (2%) Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 S+ L+ ++ L ++ +L S AE+ EK A A++ K+ F+ ++S+ELR Sbjct: 475 SEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRA-EAANQAKSEFLANISHELR 533 Query: 582 SPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL IIGF+D++ G L + + + Y + I +S T LLN++NDILD++ ++AG M + Sbjct: 534 TPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVINDILDMSKIEAGRMSI 593 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + ++ + + I E NI I L V D++ L Q+ +L+NA+ Sbjct: 594 ETEVVNASEAAEDAARIITGAASEKNIVISADVADNLHVDV-DKRALKQVLLNLLANAVK 652 Query: 701 FSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLG 757 F+ TV LK AR GD + F V + G I E + + FV N +G GLG Sbjct: 653 FTPDHGTVTLK-ARPRGDKVRFEVTDTGIGISERDIERLAKPFVQVENQFTKTHQGSGLG 711 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L+I S + LHGG ++I S + T ++ +P Sbjct: 712 LAIARSLVELHGGKLAIESEVKKGTVVSFSLP 743 >gi|13937003|gb|AAK50005.1|AF361475_1 double histidine kinase DhkD [Dictyostelium discoideum] Length = 1546 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 148/283 (52%), Gaps = 21/283 (7%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573 +++S++PL N + ++ + N+T+ E + KN LR + DE+K F Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PL I+G TD L + +N ++ +E ++ ++ LL +VN++LD++ + Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG M LNYS + L ++ + E ++ +I+ + D ++ ++ + Sbjct: 275 EAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334 Query: 694 ILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 ++SNA F+ G V IL+ + + F V + G IP+++ + +F RF V + Sbjct: 335 LISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGLSIV+ F+ LHGG V+I + G R+P Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 45/270 (16%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY----- 609 L ++ L ++ K+ F ++S+ELR+PL I+G+ LL +S Sbjct: 727 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGD 786 Query: 610 -------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +E I ++ L+ND+LD++ + L + L L+ SI Sbjct: 787 DSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTA 846 Query: 663 HENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAMDFS-SKG--------- 705 I + G+ L + V D+ RL Q+ +LSN++ F+ KG Sbjct: 847 QSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVV 906 Query: 706 ------------STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 S + +GD +F++ +NG IP+ SVF+RF R Sbjct: 907 NQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSSTR 966 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDE 779 G+G+GLSI ++ I+LH G V +S E Sbjct: 967 SYGGLGIGLSITQNIIHLHKGAVYANSEGE 996 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 13/248 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L V+VT+ A+R E EA +A++ K+ F+ ++S+E+R+P+ I+GF ++L + Sbjct: 514 LLMVVDVTEVAAAKRQAEEAREAAERANQAKSEFLANMSHEIRTPMNGILGFAEILLQT- 572 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +LNS+Q + V I LL+L+NDILDL+ +++G M L +T L L+ E I Sbjct: 573 --NLNSQQEESVRIIQQCGENLLDLINDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVI 630 Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716 K+ E + IK+ L F D R+ Q+ + +LSNA F+ +G V + +D+ Sbjct: 631 EPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQKDH 690 Query: 717 G------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 +FSV + G IP + +F F R+ G GLGL+I S INL Sbjct: 691 SVETDSFTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLINLM 750 Query: 769 GGHVSISS 776 GG +++ S Sbjct: 751 GGQITVES 758 >gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 635 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 14/289 (4%) Query: 508 DDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 D K ++ LE+ S + I P + ++ D +R L E AD Sbjct: 220 DGNLKEIEYPLEVEGSKHYFQARIAPFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDAD 279 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +K+ F+ ++S+E+R+PL I+GF++++ L ++ +Y+E I +S +LL L+ND Sbjct: 280 RMKSVFLANMSHEIRTPLNAIVGFSEIMV---LTENEEEKHEYLEIIQKNSNLLLQLIND 336 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VADR 684 ILDL+ +++G ++++ + + L++EV++ KM + N+ +KV+ G F DR Sbjct: 337 ILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKM-KLNVDLKVVRPQ--GEFWTSTDR 393 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ LSNA+ + GS + + GD++ V + G IPE+ +F RF Sbjct: 394 NRVMQVLFNFLSNAIKNTETGSITL--GLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFE 451 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 Q G GLGLSI +S + GG + +SS +T +P +E Sbjct: 452 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLPYQE 498 >gi|66812156|ref|XP_640257.1| histidine kinase [Dictyostelium discoideum AX4] gi|74855086|sp|Q54SP4|DHKD_DICDI RecName: Full=Hybrid signal transduction histidine kinase D gi|60468257|gb|EAL66266.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1546 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 148/283 (52%), Gaps = 21/283 (7%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573 +++S++PL N + ++ + N+T+ E + KN LR + DE+K F Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PL I+G TD L + +N ++ +E ++ ++ LL +VN++LD++ + Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG M LNYS + L ++ + E ++ +I+ + D ++ ++ + Sbjct: 275 EAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334 Query: 694 ILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 ++SNA F+ G V IL+ + + F V + G IP+++ + +F RF V + Sbjct: 335 LISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGLSIV+ F+ LHGG V+I + G R+P Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 45/270 (16%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY----- 609 L ++ L ++ K+ F ++S+ELR+PL I+G+ LL +S Sbjct: 727 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGD 786 Query: 610 -------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +E I ++ L+ND+LD++ + L + L L+ SI Sbjct: 787 DSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTA 846 Query: 663 HENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAMDFS-SKG--------- 705 I + G+ L + V D+ RL Q+ +LSN++ F+ KG Sbjct: 847 QSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVV 906 Query: 706 ------------STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 S + +GD +F++ +NG IP+ SVF+RF R Sbjct: 907 NQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSSTR 966 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDE 779 G+G+GLSI ++ I+LH G V +S E Sbjct: 967 SYGGLGIGLSITQNIIHLHKGAVYANSEGE 996 >gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 294 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 5/241 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608 R + L + NE + +++KN+F+ ++++E+R+PL I+GFT +L +++ +L+ + + Sbjct: 47 RRVKTLRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDNLDKATRMA 104 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +++ I+ + LL LVND+LD + ++A ++ N + +N L+ EV + T H I+ Sbjct: 105 FLKEINENKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQ 164 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ + V DR R Q+ ++ NA+ F+ KGS I N +F F V + G Sbjct: 165 VEFVEKLPQCRLVVDRVRFAQVVGNLVRNALKFTEKGSVKIGCRQLSNRNFYFYVADTGC 224 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 I E+ ++F RFV + +G GLGLSI +S + +GG + + S +T + Sbjct: 225 GIDEEGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTL 282 Query: 789 P 789 P Sbjct: 283 P 283 >gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328] gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328] Length = 1064 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R + LT KN L + + +K+ F+ +S+EL++PLT ++G + LLK LG L+ Sbjct: 327 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 386 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++Y + I S L+ +VNDILDL ++ G ++L + + + + +++ Sbjct: 387 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAVLHLHQ 446 Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + +I+ S G L + AD RL Q+ ++SNA F+ G + L+ Sbjct: 447 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYMGLRVN 506 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R +F+V + G IPE +F +F + + Q G GLGL + + LHGG Sbjct: 507 RWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLARLHGGD 566 Query: 772 VSISSSDEGVTTINCRIPS 790 +S S T +P Sbjct: 567 ISFISHQGKGTEFTLLLPP 585 >gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 880 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 135/250 (54%), Gaps = 30/250 (12%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD +KN F+ +S+ELR+P+T I GFT LL LG LN Q ++V I ++ ++NL Sbjct: 631 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQLNDTQREFVNTIYNNTERMINL 690 Query: 624 VNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 +ND+L++ +++G ++L + ++ L+ ++ E++ I+ + H+ I I L Sbjct: 691 INDVLEITKIESGSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIP----PGLPL 746 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDF---------------IFS 722 AD RL QI +L NA+ ++ G + + AAR+ N DF + S Sbjct: 747 IRADAMRLHQILYHVLLNAVKYTPAGGKITI-AAREILNVDFPEPVRSILHTNHRYLLLS 805 Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + + G I PED+ + +F+RF N + + G GLGLSIV+ + L GGH+ + S+ Sbjct: 806 ISDTGVGIRPEDLPR-IFDRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVG 864 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 865 QGSTFYIALP 874 >gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 713 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 129/251 (51%), Gaps = 2/251 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E AL + AD K+ F+ +S+ELR+PL +IIGF+ +L L Sbjct: 459 DITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSELT 518 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +YV I S LL+L+NDILD++ V+AG ++ ++ L +V+ I Sbjct: 519 NAHHKYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPLAS 578 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + NI I V + AD Q+ IL+NA F+++ V + A + SV Sbjct: 579 KKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAKSGEKETSISV 638 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+NG I ED + VF F + +A + G GLGL++V S++ +HGG+V + S + Sbjct: 639 KDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEEGKG 698 Query: 782 TTINCRIPSKE 792 +T IP ++ Sbjct: 699 STFIFTIPQQD 709 >gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] Length = 506 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 154/298 (51%), Gaps = 13/298 (4%) Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAE--RAL 555 L+A + T +++ L +LS Y L A ML +F + D++ AE A Sbjct: 185 LYAYVGTRLWMPVEAMMAGLLVLSLPFFVYVARQLNRASLMLLSFRSEKDALIAELETAK 244 Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVE 611 + +EA R+A++ K+ F+ +S+ELR+PL I+GF++++ LG + N Y Sbjct: 245 SMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAH 304 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S LL+L+N+ILDL+ ++AG +LN ++L +++ + + K +IR+ Sbjct: 305 DVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVVQ 364 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729 + L AD + + QI +LSNA+ F++ G + ++ G +I SVK+NG Sbjct: 365 DFEQTLPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYI-SVKDNGPG 423 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 IPED V + F S A + +G GLGL IV+ + +HGG + S EG I Sbjct: 424 IPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAI 481 >gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 547 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 2/228 (0%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ F+ VS+ELRSPLT+I G LL + G L SK +E ++ L+ ++N Sbjct: 303 ERMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPSKARALLEISHRNADRLVLIIN 362 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL + G ++ N + +LL E + ++ + +RI+V + D Sbjct: 363 DILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQRHGVRIQVENTDTPMQVTTDPN 422 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 R++Q+ + LSNA FS G + ++A ++ + SV + G IP VF RF + Sbjct: 423 RVIQVLTNFLSNAAKFSKPGERITIRAEENDHELRISVSDRGQGIPASEEHKVFQRFADL 482 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SN+ R ++ G GLGLS+ ++ + GG + S + TT +P K Sbjct: 483 SNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGFGTTFYFTLPKK 530 >gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1596 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 10/247 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V++ R AL +A +A K F+ +S+E+R+PL I+G+TDLL SL Sbjct: 1080 DVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLDDP--SLG 1137 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + E I ++ LL +VNDILD + ++AG ++L+ +L+ LL+ + Sbjct: 1138 GGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFAR 1197 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + I + V DG + V D+ RL QI +L+NA+ F+ GS + A Sbjct: 1198 KKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGSVTLAVACESPPGATAC 1257 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+V + G IP D + +F RF V N+ R G GLGL+I ++ + L GG + + S Sbjct: 1258 LRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVES 1317 Query: 777 -SDEGVT 782 EG T Sbjct: 1318 VVSEGTT 1324 >gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 953 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 13/247 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T ++ R +T ++E D++K+ V VS+ELR+PL++++GFT+LL +L K Sbjct: 562 TGTIFVHRDITREHEV----DKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKP--EK 615 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-MHE 664 Q +Y++ I + L NL+ND LDL +++G + +N+L+ E + T+ MH Sbjct: 616 QERYLKTIYKEAKRLTNLINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQNMHS 675 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 I I D DR+R+ Q+ ++ NA+ FS +G +V + D + ++K Sbjct: 676 ----IVFIDDASDVIVEGDRERIAQVLMNLVGNAIKFSPQGGSVTISMKNDLNNLSVTIK 731 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP + +F++F + N+ R + G GLGL+I + I H G + I S +E T Sbjct: 732 DEGIGIPTEDIPKLFSKFQRIDNSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGT 791 Query: 783 TINCRIP 789 ++ +P Sbjct: 792 AVHFELP 798 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 131/249 (52%), Gaps = 6/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ D ++ E L + E + A +K+ F+ ++S+E+R+PL ++G DLL + L+ Sbjct: 274 DIADRMQIEDELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDT---GLS 330 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + ++ + +S+ L L+ D+LD++ ++AG +++ + L +L+ E ++IA + Sbjct: 331 PEQRELLDALQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQ 390 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + + V ++ L + V D R QI +LSNA+ F+ G V+ R + S Sbjct: 391 EQGLELIVDAEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRVRQRADEHIELS 450 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G +PE+ +++F F + RR G GLGL+I GG + D+G Sbjct: 451 VRDTGVGVPEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQG 510 Query: 781 VTTINCRIP 789 + + +P Sbjct: 511 GSVFSVSLP 519 >gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 642 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 11/261 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N +++ ++ + D ++ L EK A+R +E+K+ F+ +S+E+R+P+ +IG TDLL Sbjct: 232 NNRSIGFYLLIKDITEQKKLLIEKETAVR-TNEVKSEFMAMMSHEIRTPMNGVIGMTDLL 290 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + L+ +Q +YV I S LL ++NDILD + V++G +L LN + E Sbjct: 291 LDT---PLDEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAET 347 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712 ++ K E N+ KV IS G + + D ++ QI ++ NA+ F+ +GS V + Sbjct: 348 FDTLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPRGSIGVSIDK 407 Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 A G + F+VK+ G +PED +F F H R+ G GLGL+I + L Sbjct: 408 AEAEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQL 467 Query: 768 HGGHVSISSSDEGVTTINCRI 788 G + + G T I Sbjct: 468 MDGQIYCEPNPGGGTIFRFHI 488 >gi|197122594|ref|YP_002134545.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172443|gb|ACG73416.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 729 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 3/219 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL AD K++F+ +VS+ELR+PL ++G+ DLL KLG L ++Q ++ +++S L Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLAEKLGPLAARQRTALQVVASSGRRL 543 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + ++L+L+ + ++ L D++ + ++A + E +R++ + Sbjct: 544 RAFIEELLELSRHELARPAEPFAPFPLADVITQAVVALAPRFAERGLRVRARVARGTPAA 603 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + R+R+LQ+ +L NA ++ +GS + L AA SV + G IPE+ +F Sbjct: 604 LGQRERVLQVLVNLLGNAERYAPEGSAIHLAAAAVGDRVAVSVTDRGPGIPEEHQALIFE 663 Query: 741 RFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R +A R + +G+GL+I + + HGG + + S Sbjct: 664 RLYQVRDDAPRREGGALGIGLAIAKGIVEAHGGEIGVRS 702 >gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1261 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 18/254 (7%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + EA A+ K++F+ ++S+ELR+PL I+GF+ LL S S + K S +E Sbjct: 751 EITLRQAKEAAEAANRSKSTFLANMSHELRTPLNAILGFSQLLSRSIYLSGDEKDS--LE 808 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S LL L+N +LDL+ ++AG MK+ L LL +++ K ++ N+ +K Sbjct: 809 VIHSSGQHLLTLINQVLDLSKIEAGRMKMQLRKFDLFHLLQSLERMFTQKANDKNLELKF 868 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------DNGD 718 + + D +L QI +LSNA+ F+ +G ++ R G Sbjct: 869 DCHPDIPQLIYTDETKLRQILINLLSNAIKFTPRGEIILRVYPRWSNLEAISSSRLPAGT 928 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G I D CK +F FV Q + G GLGL I + FI+L GG +S+ Sbjct: 929 YALSFEVKDTGVGIAPDECKYLFQAFVQTLSGQQAQEGTGLGLKISQQFIHLIGGEISVE 988 Query: 776 SSDEGVTTINCRIP 789 S TT IP Sbjct: 989 SDLGRGTTFQFMIP 1002 >gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 789 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 14/242 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYI 613 +A + A+ K+ F+ +S+ELR+PLT +IG + L LG SK Q +Y++ I Sbjct: 408 QATQAANHAKSEFLAAMSHELRTPLTCVIGLSATLLRWSLGEGGSKTVSIEKQRRYLQTI 467 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL L+NDILD + ++AG LN + L L + +S+ K ++++I Sbjct: 468 QENGEHLLALINDILDFSQLEAGKAVLNINEFSLRYLAQQTLRSLKEKASSG--QVELIL 525 Query: 674 DGKLGS----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D ++ + F AD +RL QI +L NA+ F+ G V L+ R+ +F +++ G Sbjct: 526 DWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAVFQIEDTGIG 585 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP++ +F +F QR G GLGL++ + + LHGG + + S+ + R Sbjct: 586 IPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTVR 645 Query: 788 IP 789 +P Sbjct: 646 VP 647 >gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 663 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/360 (26%), Positives = 179/360 (49%), Gaps = 31/360 (8%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGW 497 ++ +S+G A++ + R+ ++N AF L + E+ L PG ++ +T +R + Sbjct: 149 AVEAISDGFAIYDENDRLLIANEAFTKLHEGIEDALGPGASFEDLLRSTLARGLID---- 204 Query: 498 DLFAAIITSFDDER---KSLQGTLELLSDSVLEYS--------IIPLPNAQTMLTFVNVT 546 I D +R + L + S+ + ++ + N +T+ + +++ Sbjct: 205 ------IGCEDPDRWLDRQLTASKHAFSEIHMRFANGCWMSRRHKRMENNETVRIWTDIS 258 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R + L + AD K+ F+ ++S+E+R+P+ IIGF +LL G+L+ Q Sbjct: 259 SLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNELLLQ---GNLSDTQ 315 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I +SS L++L+++ILDL ++ G +++ + LN L++ + S+ E Sbjct: 316 RDYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLISAAR-SLQALADEKA 374 Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++KV S + + D +R+ QI +L NA+ F+ G + +A +NG FSV + Sbjct: 375 LQLKVSSTLPSQTIAIGDVERIRQILVNLLGNAIKFTETGEVTLSISAENNG-LAFSVND 433 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 G I D + +FNRF + G+ +G GLGL+I + L GG +++ S EG T Sbjct: 434 TGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTELMGGTITVESERGEGST 493 >gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 663 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 23/269 (8%) Query: 545 VTDSVR-AERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLT 585 + DS+R A R LT++ + L + A I+N F+ +S+EL +PLT Sbjct: 390 LMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLT 449 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG + L LG L +Q +Y++ I S LL+++NDILDL+ + AG LN Sbjct: 450 YVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLDMINDILDLSQIQAGKTVLNICEF 509 Query: 646 VLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L L + S+ K + +K V + + F AD R+ QI +L+NA+ F+ Sbjct: 510 SLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTP 569 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 +G V L+ ++ IF V++ G IPE+ VF +F V ++ G G+GL++ Sbjct: 570 QGGNVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALT 629 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + LH G + + S+ + IPS Sbjct: 630 KQIVELHRGRIEVESTVGVGSIFTVWIPS 658 >gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 625 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 130/257 (50%), Gaps = 23/257 (8%) Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKL 599 ER + E+ +AL A + K+ F+ +S+ELR+PLT++IG + L + Sbjct: 223 ERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPDNF 282 Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L KQ Y++ I S LL L+NDILDL+ V++G L +S L L + ++ Sbjct: 283 PALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQKLAQQCLHTL 342 Query: 659 ATKMHEN----NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 E N++IKV D F AD +R+ QI +LSNA+ F+ KG V L +R Sbjct: 343 RDFAKEKGVNVNLQIKVDQD----LFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSR 398 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + IF VK+ G I ++ +F +F + + +R Q G GLGL++ + + LHGG + Sbjct: 399 KDKTAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSI 458 Query: 773 SISSSDEGVTTINCRIP 789 S T IP Sbjct: 459 QFESEVGLGTKFTVYIP 475 >gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 467 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 4/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L L D + F+ +VS+ELR+PLT+I GF + + KQ Y+ Sbjct: 225 RTLDAMAAQLEAIDRERQEFLAYVSHELRTPLTSIRGFVQGMLDGTIPP--EKQQSYLAR 282 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + + L LV+D+L L + +G N+ L +L V++ ++ E ++++ Sbjct: 283 VFSETERLRRLVDDLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFR 342 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + G+L + AD RL+Q+F ++ NA+ FS G V+++A + +G V + G IP Sbjct: 343 TQGELPVY-ADEGRLVQVFMNLVDNAIKFSPPGGRVLVEAEKTDGLLRVQVTDEGPGIPP 401 Query: 733 DMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F+ F S R + G GLGL+I + HGGH+S+ + EG T +P+ Sbjct: 402 EELPRIFDSFYSGTARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLPA 460 >gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 821 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N+ L +AD +++ FV ++S+ELR+PL ++IGF+ +L ++ SL K +VE I Sbjct: 309 LEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSLLEKDLNFVEKIH 368 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL+L+NDILDL+ ++AG M++ +++ D++ + + + T+ N+ ++V Sbjct: 369 RNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNVALRVEGQ 428 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D +L Q+ ++ NA+ F+ +GS V LK ++ V + G I ED Sbjct: 429 LDLPYIQTDGDKLRQVLINLVGNALKFTERGS-VTLKVGVESQWLRIDVIDTGIGIAEDK 487 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +VF F A G R G GLGL+I S + + G V + S +T + +P Sbjct: 488 LMTVFEPF-RQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGSTFSVYLP 544 >gi|298682345|gb|ADI95406.1| TodS [Pseudomonas putida] Length = 978 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ N + + ++ N+TD +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVERIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G + + ++ G + Q+ E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689 +DA M L+Y L+ L + + + +I D KL VA D ++ + Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I +LSNA F+ G + L +R N + +V ++G IP + K +F RF + Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ RG GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I L L+ + + N++ + V++D +L D ++ Q+ + NA++ S+ Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884 Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + D GD + SVK+ G I E +FN F + ++ G+G+GL Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +I + +H G + + G IP+++ Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974 >gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] Length = 1272 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 11/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ L E E +A K+ F+ ++S+E+R+PL IIGFTDLL +S + K++ Y+ Sbjct: 774 AEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS---FPSGKEASYL 830 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S LL L+NDILDL+ ++AG M L+YS + L + E+ T++ + Sbjct: 831 DAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFI 890 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVK 724 + L V D RL Q+ ++ NA+ F+ +G + L D SV+ Sbjct: 891 LDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVE 950 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +++F F ++ + R+ G GLGL+I + + + GG +S+ S T Sbjct: 951 DTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGT 1010 Query: 783 TINCRIP 789 T IP Sbjct: 1011 TFTVNIP 1017 >gi|163753494|ref|ZP_02160618.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] gi|161327226|gb|EDP98551.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] Length = 510 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 140/253 (55%), Gaps = 14/253 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +SV + L KN+ L++ ++ KN+F+ + S+ELR+PLT + F +L+ + S+ ++Q Sbjct: 116 ESVINSQILELKNKYLKEKEDFKNTFIANFSHELRNPLTGVTAFCSVLEKT---SMTTEQ 172 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YVE I +S+ L N++ DIL+++ ++ G + + ++L+ ++ + + K + N Sbjct: 173 QDYVEVIKSSADHLKNMIGDILEMSKIEVGKLTIEEELFNFHELVEMLEFTYSVKAKQKN 232 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFI 720 I +V D K+ ++ +D+ R+ QIF ++ NA F+S G + + AR + Sbjct: 233 IEFEVDFDEKIPKYIESDKTRIKQIFENLIENAFKFTSTGKVTLSIHENQRRAR-KVNLN 291 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 SVK+ G IP + +FN F + + G GLGLSIV+ ++L G +++ S ++ Sbjct: 292 ISVKDTGIGIPPEKLDIIFNSFTQLNNSQKYSGTGLGLSIVKGLVDLMDGKITVESEEKV 351 Query: 781 VTT----INCRIP 789 +T IN + P Sbjct: 352 GSTFKMNINFKYP 364 >gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1120 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 10/240 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T + E+ L + EA A E K++F+ ++S+E+R+P+ IIGF+D++ T+ Sbjct: 514 IMDITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTT---D 570 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + Q +YV I+AS+ LL+L+NDILD A ++ G ++L L ++++ V +++ + Sbjct: 571 LVAAQRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQ 630 Query: 662 MHENNIRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + I++ +L + ADR R Q+ I+ NA+ F+ KG + +G Sbjct: 631 TRKKRLDIELSLAPELAEYYYGAADRLR--QVLMNIVGNAVKFTEKGQVHLSIKPTQDGK 688 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +FSV++ G I D + +F F RR G GLG SI + +NL GG + SS Sbjct: 689 VLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASS 748 >gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1049 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 140/249 (56%), Gaps = 15/249 (6%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T R E+ L + +++ +K++F+ ++S+E+R+PL I+GF+ +L + Sbjct: 667 ITPRKRLEQDLRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAET---DEEQ 723 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I ++ +LL L+ DILDL+ ++AG ++ N+S LN+L++E + I K E Sbjct: 724 EKREYISIIENNNALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTAE 783 Query: 665 NNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +++I + L + F +DR RL Q+ +L+NA F++KGS I R G + F Sbjct: 784 G---VELIFEPGLDACLFHSDRNRLSQLLINLLTNAAKFTAKGS--IRFGYRAEGSRLRF 838 Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP + + +F+RFV N+ ++G GLGL I +S + GG + + S + Sbjct: 839 YVSDTGCGIPPEGQRRIFDRFVKLNSF---KQGTGLGLPICKSIVEHLGGEIGVKSEEGR 895 Query: 781 VTTINCRIP 789 TT +P Sbjct: 896 GTTFWFTLP 904 >gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 597 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 3/258 (1%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A + +VT + RAE L E A K F+ +VS+ELR+PL IIGF+D+L Sbjct: 297 GAGVICFLADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDML 356 Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + +L + SK+ +Y E I S LL +VN ILD++ +++G M++ +L ++ Sbjct: 357 ASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQ 416 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + K + I + L V D++ QI +LSNA+ F+ V ++ Sbjct: 417 CVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLY 476 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 D +V ++G I + + F S A+ G GLGLS+V + LHGG Sbjct: 477 PDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGA 536 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S+ + T + R+P Sbjct: 537 IAVESAPQRGTCVTVRLP 554 >gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1314 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 14/259 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKL 599 TF ++T E AL + A K+ F+ ++S+E+R+P+ I+G + L L+ +K Sbjct: 558 TFTDITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQAK- 616 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++Q ++E I+ S L+ L+NDILDL+ ++A M L L++LL ++ ++ Sbjct: 617 ---EARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVL 673 Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---- 714 M + + I+ G + V D RL Q+ +LSNAM F+ +G I A Sbjct: 674 PAMRNKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTAEPYVQ 733 Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ F F VK++G IP ++ +F F+ R+ G GLGL+I + + G Sbjct: 734 LTDHYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHG 793 Query: 771 HVSISSSDEGVTTINCRIP 789 +++ SS +T CR+P Sbjct: 794 KITLQSSLGQGSTFTCRLP 812 >gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 885 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ D + E AL + EA A K+ F+ +S+ELR+PL I+GFT L++ + N Sbjct: 385 DIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHNPN 444 Query: 604 SK---QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++E I S LL L+ND+L+++ ++AG + LN + L LLN +++ + Sbjct: 445 IPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLEL 504 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718 + + D ++ +++ AD Q+L Q +L NA+ F+ KG ++ +K + N D Sbjct: 505 PASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIKFTVKGGVILRVKLGKFNHD 564 Query: 719 F---IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F F V++ G I +F F + R ++G GLGLSI + FI L GG + + Sbjct: 565 FGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV 624 Query: 775 SSSDEGVTTI 784 SS+ G TI Sbjct: 625 -SSERGKGTI 633 >gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1260 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 5/263 (1%) Query: 533 LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 LPN V ++T RAE LT+ +A K F+ +S+E+R+PL IIGF+ Sbjct: 992 LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFS 1051 Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ K G + N + Y+ I+ S +L+LVND+LD++ ++AG ++ Y + LND Sbjct: 1052 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1111 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L E + + + + I+ +L VAD + + QI ILSNA+ ++ G VI+ Sbjct: 1112 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1171 Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 A + +GD + V++ G + + F ++ RG+ G GLGL + ++ + Sbjct: 1172 STAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1231 Query: 768 HGGHVSISSSDEGVTTINCRIPS 790 + +I+S+ T + PS Sbjct: 1232 NRARFTINSTPGEGTLVEVAFPS 1254 >gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 592 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 25/338 (7%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 + EG+ V G I L NPAFR L TEE P I A S Y Sbjct: 260 MGEGLMVTDAKGTITLVNPAFRDLLAITEEVEGRPLIDITRHPALHSAYKT--------- 310 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 II S + + + TL+ + + +PL + + V V + Sbjct: 311 -IIASKSERLEEI--TLDAKGEKTILTHWVPLLDGDRLQGVVAVFHDI----------SN 357 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +++ ++I+ FV +VS+ELR+P+T I G+ + L + L S + ++VE I + S L Sbjct: 358 IKRLEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALASDPERAVRFVEIIHSHSERLT 417 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L+ D+L L+ +++G + L S + + + + K + I I + + Sbjct: 418 SLIGDLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPIL 477 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 DR RL Q+ +L NA+ ++ + T+ +KAA + SV + G IP +F R Sbjct: 478 GDRGRLEQVLINLLDNAIKYTPEKGTITVKAADEEKMLKISVTDTGMGIPPKDLPRIFER 537 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V A ++ G GLGLSIV+ + HGG +S+ S+ Sbjct: 538 FYRVDEARSREQGGTGLGLSIVKHIVQAHGGALSVEST 575 >gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1259 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 18/263 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++D AE L + EA A++ K+ F+ ++S+ELRSPL I+GFT ++ S +L Sbjct: 756 IDISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVINGS--SNL 813 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++Q + I S LL L+N+ILDL+ ++AG + L L L+ E++ K Sbjct: 814 TTQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKA 873 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + N+++ VI + L ++ DR +L QI +LSNA+ F+ KG TV L+A + Sbjct: 874 SQKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQKG-TVCLEADLSETSPVC 932 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINL 767 F V + G I D ++F+ FV Q ++G GLGL+I + +I L Sbjct: 933 LIGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQQGTGLGLAICKGYIKL 992 Query: 768 HGGHVSISSSDEGVTTINCRIPS 790 GG + + S T + +P+ Sbjct: 993 FGGKIEVHSQPRVGTVFDLEMPA 1015 >gi|288962304|ref|YP_003452599.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288914570|dbj|BAI76055.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 385 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 7/272 (2%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPL 584 L I P P +L D+ E A + EA L + K+ ++ H+S+ELR+PL Sbjct: 103 LTVRIDPAPGRGLLLVEGLADDTAHRELARLKAREAELADTNRRKSDYINHLSHELRTPL 162 Query: 585 TNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 T +IGF ++L+ LG +S + + I A+ +L L+N++LDLA ++AG + L+ Sbjct: 163 TAVIGFAEILRDQLLGPPDSPRYGEAAAQIVAAGDYMLELINNLLDLARIEAGRLDLHEE 222 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L +++ +A + + + + AD + Q+ + +++NA+ F++ Sbjct: 223 ECPLALIVDATLSMMAVRAERGGVAMSARLPADSPTLWADPSLVRQMLTNLVANALKFTA 282 Query: 704 KGSTVILKAARD-NGDFIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLS 759 +G V + A RD +G I +V ++G + PE + +++ F + A + RG GLGL Sbjct: 283 EGGHVTVSAERDADGGLILAVADDGRGMAPEQIPRALTAFTQLHDPATVAE-RGSGLGLP 341 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + + I LHGG ++I S+ TT+ R P + Sbjct: 342 LTAALIALHGGGIAIDSAPGRGTTLRLRFPPE 373 >gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1207 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 105/411 (25%), Positives = 192/411 (46%), Gaps = 47/411 (11%) Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQVDLETKYN---TLVKVQGETIDHLS 444 P+G+ + + + S P G ++ F ++T + + E + TL++ Q E Sbjct: 549 PSGELIWISINSQPLCDEHGNVYAAVASFHDITARRNAEQELRFQKTLLECQTEAS---P 605 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 +GV V PD R +N FR +WK G+ I ATC+ +L A + Sbjct: 606 DGVLVVSPDRRCLYANQRFREMWKIT------GSPIEQ--ATCAA------SMELMLAQV 651 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE--------RAL 555 + R ++ EL ++ L I L + +T + S + R + Sbjct: 652 CDPERVRNEIE---ELYANPNLTGKTEIELKDGRTFERYSAPVISSEGDYYGRVWFFRDV 708 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TE+ R + +KN FV VS+ELR+PLT+I G L+ G L + + ++ Sbjct: 709 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLIAGGVAGELPPRAAAMIDIALK 764 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S L+ L+NDILD+ +++G M +VL++L+ + ++ + N++I++ + Sbjct: 765 NSERLVRLINDILDIEKIESGKMVFKMQPVVLDELVRQTIEANRGFGQQYNVQIELTATL 824 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734 D R+ Q+ + ++SNA+ FS G V + R+ G +V ++G IP + Sbjct: 825 PGVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEF 884 Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F +F +++ Q+ G GLGLSI + + HGG + ++++ G T Sbjct: 885 RDRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERHGGQIGFVTATGVGTT 935 >gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 962 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 6/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++V+ VR E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T S Sbjct: 454 LLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---S 510 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S ++ VE + SS +LL +++DILD + +++ +K+ S +++N + + Sbjct: 511 LPSDANRLVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPL 570 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + D ++ + D RL Q+ S +LSNA+ F+ G V D G + Sbjct: 571 VVKKRLELYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVVCSDEGYLV 630 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G I +F+ F QR +G GLGL+I E ++L G ++I S Sbjct: 631 FKVRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEP 690 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 691 GLGSEFGIRIP 701 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 9/227 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L +A +K+ F+ ++S+ELR+PL I+G T+ L+ G +N+KQ + +E I SS+ Sbjct: 889 NQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKALETIERSSS 948 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+NDILD+A ++AG +KL+ +TI + +L I + + I++++ L Sbjct: 949 HLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLP 1008 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIP 731 D +R+ Q+ +L+NA+ F+ + + L+ + + D +V + G I Sbjct: 1009 DLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIM 1068 Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ +F F+ +A Q G GLGL++V+ + LHGG V ++S Sbjct: 1069 QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTS 1115 >gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1086 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 123/531 (23%), Positives = 216/531 (40%), Gaps = 66/531 (12%) Query: 292 AIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFL 346 A+D+S E+ +++ ++ N+ + FD+ F +R+ +EL + AFL Sbjct: 445 AMDISGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFL 504 Query: 347 ATNPS----NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLH 401 ++EL F W E+I V+++ E +H+ G++ H Sbjct: 505 GKTSRELGIDEELCRF---------------WDEHIRRVFETGEPQAAEFHMNWRGRSSH 549 Query: 402 V---IVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSE--------G 446 + G + + ++T Q LE +Y L +D + G Sbjct: 550 FDWRLFPERDESGEVQSVFSLSRDITRQRSLEKEYELLFH---RMLDGFASHEIICDEAG 606 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 V V D R NPAF + + G + + RY+ E+ G Sbjct: 607 VPV---DYRFLRVNPAFERITDVTAADIV-GRTLLEVFPGTERYWIETYGKVALTGEPIH 662 Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 F+ D S Q F ++T+ V RAL E + A Sbjct: 663 FEHYAAE--------QDKFFNVSAFRPAPGQFACIFSDITERVLTSRALVEAKDLAESAS 714 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +K+ F+ ++S+E+R+PL I+G LL+ G L +Q++Y Y +S L L+ D Sbjct: 715 RVKSEFLANMSHEIRTPLNGIMGMLQLLRA---GDLTEEQAEYAAYGIKASRRLTRLLTD 771 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685 ILDL+ ++AG + + + L D L+ ++Q A + + + D D Sbjct: 772 ILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLPDRLFGDDT 831 Query: 686 RLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 R+ Q+ ++ NA+ ++ G T + + D +F+V + G IP+D +VF Sbjct: 832 RIQQVLVNLIGNAIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGIGIPDDKLGTVFE 891 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F VS+ +G GLGL+I + I L GG +++ S T +P Sbjct: 892 HFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGLCVP 942 >gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61] gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61] Length = 470 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ V VS+ELR+PL I+G +LL L +Q +Y+ I + L+ L Sbjct: 238 EVDRMKSELVSTVSHELRTPLAGILGLAELLLNKPLAP--ERQRKYLTAIGQEAERLMAL 295 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV 681 +ND LD+ ++AG + + L ++ ++ + + T +H ++ ++ K Sbjct: 296 INDFLDVQRMEAGRQTYRWEPVDLVPIMEKIIDAEKMGTDIHTFSVSVET----KRTMIR 351 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 DR+RL Q+F+ ++ NA+ +S G V+++ +G V++ G IP + +F + Sbjct: 352 GDRERLRQLFTNLVHNAVKYSPNGGAVVIRLYEHSGCLCVDVQDEGLGIPAEALPHIFEK 411 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V N+ R + G GLGL+IV+ HGG V++ S ++ +T R P Sbjct: 412 FFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFP 461 >gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 647 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 133/253 (52%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE L EA A + K F+ ++S+E+R+P+ +IIG T LL ++L + Sbjct: 153 DITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTEL---S 209 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +YVE I SS LL ++NDILDL+ V+AG ++L L +NE+ ++ H Sbjct: 210 AEQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAH 269 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719 E +++KV I + + V DR RL Q+ I+ NA+ F++ GS TV L ++ Sbjct: 270 EKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAAR 329 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I FSV + G I + +F F RR G GLGLSI + L GG + S Sbjct: 330 ITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAES 389 Query: 777 SDEGVTTINCRIP 789 +T + IP Sbjct: 390 RKNAGSTFHFEIP 402 >gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1159 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 10/237 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L A + K+ F+ ++S+ELR+PL +++ LL + +L +KQ +Y Sbjct: 698 QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRNLTAKQVEY 757 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + + LL L+NDILDL+ V+AG M ++ +VL DL ++K + + E +R Sbjct: 758 AHVIHTAGSDLLQLINDILDLSKVEAGKMDIHLERVVLRDLAEDLKSTFSPITVEKGLRF 817 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------IF 721 V ++ G + D+ RL Q+ +LSNA+ F+ +GS + A GD F Sbjct: 818 TVDLAPGIPADLLTDQHRLAQVLRNLLSNAVKFTERGSVELAIVATLGGDLSPATPSVTF 877 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G I E+ + +F F RR G GLGLSI L GG + S Sbjct: 878 KVTDTGVGIAEENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVAALLGGEIEARS 934 >gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 12/257 (4%) Query: 539 MLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593 ML+F + D++ AE A + +EA R+A++ K+ F+ +S+ELR+PL I+GF+++ Sbjct: 226 MLSFRSEKDALIAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEV 285 Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + LG + N Y + S LL+L+N+ILDL+ ++AG +LN ++L ++ Sbjct: 286 MSNEVLGPMSNPTYRDYAHDVHESGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLGIVE 345 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + +IR+ + +L AD + + QI +LSNA+ F++ G + ++ Sbjct: 346 DCCHMMELRARNKDIRVVQDFEHELPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRV 405 Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 G +I S+K+NG IPED V + F S A + +G GLGL IV+ + +H Sbjct: 406 GWTAGGGQYI-SIKDNGPGIPEDEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMH 464 Query: 769 GGHVSISSS-DEGVTTI 784 GG + S EG I Sbjct: 465 GGEFELHSKLREGTEAI 481 >gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1390 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A+ K+ F+ ++S+ELR+PL I+GFT LL + L S+Q +Y++ I Sbjct: 910 LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQIIQ 967 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+N++LDL+ ++AG + LN + L LL + + K N+ + + Sbjct: 968 QSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQLQ 1027 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPE 732 + +V D +L Q+ +L NA+ F+ GS T+ + F V++ G I Sbjct: 1028 QDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGITP 1087 Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D + +F FV ++ R ++G GLGL+I + +++L GG ++I S +G IP Sbjct: 1088 DEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIP 1145 >gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 640 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ ++++N FV VS+ELR+PLT I G L+ LG++ Q +E ++S L + Sbjct: 407 KRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPENMQQMLEIAQSNSQRLRH 466 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++D+LD+ + AG M+ + + L LL + +R+++++ G +A Sbjct: 467 LIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYAERQQVRLQLLA-GSDCQVLA 525 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +R+ Q+ + +L+NA FSS G V L AA +G SV++ G IP +F++F Sbjct: 526 DAKRVEQVLANLLANAAKFSSPGQPVELSAAPRDGWVRISVRDQGLGIPTSFKPRIFSKF 585 Query: 743 VSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + A G Q+ G GLGL+I + I GG + S + +T +P Sbjct: 586 -AQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEGQGSTFWFELP 634 >gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 580 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 12/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 F +VT+ R L E A A+E K+ F+ ++S+ELR+PL ++IGF+++L+ Sbjct: 327 AFRDVTE----RRKLRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDE 382 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G +N KQ +YV I S LL+L+NDILDL+ V++G M+L S L D+L + Sbjct: 383 LYGPMNEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAM 442 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 K + + I + D + + +AD+++L QI +LSNA+ F+ G T+ + +AR Sbjct: 443 FKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQV-SARRM 501 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 DF+ +V + G I +F F + + + G GLGL++ + + LHGG + Sbjct: 502 PDFVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIR 561 Query: 774 ISS 776 + S Sbjct: 562 VKS 564 >gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] Length = 1057 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 136/249 (54%), Gaps = 9/249 (3%) Query: 532 PLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 PL N + + V ++T+ E+ L E +D +K++F+ ++S+E+R+PL I Sbjct: 658 PLNNDPSKIEMVCVNYDITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAI 717 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +GF++L+ ++ ++ +YV + ++ +LL L++DILDL+ ++AG ++ N + Sbjct: 718 VGFSNLIAETEDPD---ERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDV 774 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 N + E+ +S++ K+ + + ++ V D+ R+ Q+ ++NA+ F+ +GS Sbjct: 775 NQMCQEIVRSLSLKVLDKPVELRFGDHLPECRLVGDKTRITQVLINFINNALKFTREGSV 834 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + D F V++ G+ IPE +SVF RFV Q G GLGL+I +S + Sbjct: 835 TLGYRCDDGMMLTFYVEDTGTGIPEQEQESVFERFVKLNSFVQ--GTGLGLAISKSIVEQ 892 Query: 768 HGGHVSISS 776 GG + ++S Sbjct: 893 MGGRIGLNS 901 >gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 779 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 21/244 (8%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E+ + E+ +ALR A+ K+ F+ +S+ELR+PLT +IG L G +S Sbjct: 377 EQRVIERTQALRDALQAAQAANLAKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSS 436 Query: 605 ------KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 KQ +Y++ I + LL L+NDILDL+ V+AG + L S L+ L N++ S+ Sbjct: 437 QRLPVEKQQRYLKTIQENGQHLLELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSL 496 Query: 659 ATKMHENNIRIKVISDGKLGS----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ + +++ D ++ F AD++R+ QI +LSN + F+ +G VIL+ Sbjct: 497 NEQAYQQQVTLQL--DWRVPPERDCFSADQRRVKQILFNLLSNGIKFTPEGGKVILRVWP 554 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +N +F V++ G I +D +F +F + +R + G GLGL++ + I LH G + Sbjct: 555 ENHLVVFQVEDTGIGIAQDQLPLLFQKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKI 614 Query: 773 SISS 776 + S Sbjct: 615 EVES 618 >gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 853 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 153/295 (51%), Gaps = 13/295 (4%) Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 DDE++ L+ E L+ ++ + + Q V + ++ L + ++ A+ Sbjct: 420 DDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQD---LYDAVQSAESANR 476 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYISASSTILL 621 K+ F+ +S+ELR+PLT +IG + L G+ +K Q Y++ I S LL Sbjct: 477 AKSEFLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLL 536 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGS 679 L+NDILDL+ V+AG L S L+ + E+ Q+ K +N +++ + + +L Sbjct: 537 ELINDILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDL 596 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F AD++R+ QI +LSN + F+ G +V LK R IF V++ G I ++ +F Sbjct: 597 FAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVEDTGMGISQEQKPLLF 656 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F +++ + Q+ G GLGL++ + + LH G + + S+ +T ++P+++ Sbjct: 657 KKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQ 711 >gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1188 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 3/234 (1%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +D +RA+ L L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ ++ L +++ Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAAR 585 Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++R+ G +F++D QR+ QI +LSNA+ F+ G + A D G V+ Sbjct: 586 HLRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPTDGGMLRIDVR 645 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++G I D +F F + Q G GLGLSI F L GG ++++S Sbjct: 646 DSGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699 >gi|302864826|ref|YP_003833463.1| ATP-binding region ATPase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501111|ref|YP_004079998.1| histidine kinase [Micromonospora sp. L5] gi|302567685|gb|ADL43887.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407730|gb|ADU05847.1| histidine kinase [Micromonospora sp. L5] Length = 448 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 1/236 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR A E K+ F+ +VS+ELR+P+T IIG LL S L +Q++ V I Sbjct: 211 LDEKSAQLRAASESKSRFLANVSHELRAPVTAIIGLARLLADSASDPLTGEQARQVGLIR 270 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S+ LL LVN++LDLA ++G ++ ++S + L + +++ ++ + + V Sbjct: 271 SSAGDLLGLVNELLDLAKAESGRIEPDWSDVDLRAVFGQLRGTLRALAARPEVELVVEEP 330 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +D L Q+ +L N + F+ +G V L+A R G + SV + G IP ++ Sbjct: 331 PAPATVRSDEVLLAQVLRNLLHNGLKFTERGE-VRLRAERRGGQWTLSVTDTGVGIPPEL 389 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + VF F + G GLGL I L GG + ++S +T +P+ Sbjct: 390 HERVFEEFYQVPGTTRVGGTGLGLPYARRLITLLGGTLELTSEPGRGSTFTVVLPA 445 >gi|307610980|emb|CBX00603.1| sensor histidine kinase [Legionella pneumophila 130b] Length = 773 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 12/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+G ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK--KLPSFVQNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667 I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA ++ E + Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + +L + + D ++ I ILSNA+ F+ + + V ++ + N + +++N Sbjct: 292 VFSMDLPDELQAQI-DPDKIQHILINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP D+C+++F RF R G GLGLSI + F+ LHGG + ++ G Sbjct: 351 GPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410 Query: 785 NCRIPSK 791 +P K Sbjct: 411 TIELPLK 417 >gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1658 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 9/259 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ AE AL E EA A+ K++F+ ++S+ELRSPL I+GF L+ S Sbjct: 1162 TNTDITERKLAEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSV-- 1219 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + + I S LL L+N +LDL+ ++AG + LN +T L+ LL EV+ Sbjct: 1220 TLPQQYQDNLRIIHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFRL 1279 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718 K++E ++++ + + + D +L Q+ ++SNA+ F+S GS V+ + R N D Sbjct: 1280 KVNEKGLQLRFNWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTNDD 1339 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +K+ G I D +S+F F S + + G GLGL I FI L GG + Sbjct: 1340 GRMTLYFEIKDTGCGIAADELESIFEAFVQSQSGVQSQSGTGLGLPITRKFIQLMGGEIR 1399 Query: 774 ISSSDEGVTTINCRIPSKE 792 + S TT I +KE Sbjct: 1400 VESQVSQGTTFTFDIQAKE 1418 >gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 891 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 8/246 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L + + K+ F+ ++S+ELR+PL +++ +++L T+ G+LN Q +Y I Sbjct: 480 LEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSNILATNTEGNLNDHQVKYAYTIH 539 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+NDILDLA V+AG + L + + L+++ +Q + + K + D Sbjct: 540 QSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEISEFAEQQFLPVARQKGLSFKTVVD 599 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNNGS 728 L + D QRL+QI +LSNA F+ +G +R G FS+ + G Sbjct: 600 ADLPQTLYTDEQRLMQIIKNLLSNAFKFTERGEVKFHIHHAQSGSRAKGGIAFSIIDTGI 659 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP++ + +F F R+ G GLGLSI + L GG + ++S + Sbjct: 660 GIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISINMAQLLGGAIHVTSVPGKGSVFTL 719 Query: 787 RIPSKE 792 +PS+E Sbjct: 720 TLPSEE 725 >gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] Length = 513 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 7/246 (2%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF++++K G+ + Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPAYR 297 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LLNL+N+ILDL+ ++AG L + L + E + + + Sbjct: 298 EYATDIHDSGMHLLNLINEILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQ 357 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 + D L AD + L QI +LSNA+ F+ G + +K +G SVK++ Sbjct: 358 TFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVKDS 417 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPED +V + F S A + +G GLGL IV+ I+LHGG + S T + Sbjct: 418 GPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEV 477 Query: 785 NCRIPS 790 P+ Sbjct: 478 IVTFPA 483 >gi|2213649|gb|AAC45438.1| bZIP histidine kinase [Pseudomonas putida] Length = 978 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 25/284 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ N + + ++ N+TD +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G L ++ G + Q+ E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGHWKPLWRAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689 +DA M L+Y L+ L + + + +I D KL VA D ++ + Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I +LSNA F+ G + L +R N + +V ++G IP + K +F RF + Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ RG GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I L L+ + + N++ + V++D +L D ++ Q+ + NA++ S+ Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884 Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + D GD + SVK+ G I E +FN F + ++ G+G+GL Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +I + +H G + + G IP+++ Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974 >gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 838 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++ F +++ E+ EA +A + K+ F+ +S+E+R+P+ +IG T LL + Sbjct: 324 ALIVFKDISRRKMVEQEWIRAREAALEASQKKSDFLAAMSHEIRTPMNGVIGMTTLLADT 383 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LN +Q+ YV I S+ LL L+ND+LD + ++AG ++L+ + L L+ +V + Sbjct: 384 ---HLNPEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGKIRLDPQPLDLQFLVEDVLEM 440 Query: 658 IATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + E NI ++ DGK L + AD RL QI ++ NA+ F+ KG + ++R + Sbjct: 441 FKPTVAEKNIGLECRFDGKNLWHYRADAGRLRQILVNLMGNAVKFTEKGFVRLEVSSRGD 500 Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D +F VK+ G + E +S+F ++ + G GLGLSI + ++L GG + Sbjct: 501 KDGKTALLFEVKDTGQGLQEHEKRSLFQKYFQAKAGMKFGGTGLGLSICKQLVDLMGGDI 560 Query: 773 SISS 776 + S Sbjct: 561 GVES 564 >gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3] gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3] Length = 759 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 160/312 (51%), Gaps = 23/312 (7%) Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 S + G + AA IT+ E + +E LS +V + L +Q ML+ + Sbjct: 448 SERFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVAQ-----LEASQQMLSQL---- 498 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + + E A+T + EA A++ K+ F+ ++S+ELR+PL I GF++++ G + K Sbjct: 499 ARKYEIAMT-RAEA---ANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGEKYK 554 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LL+L+NDILD+A ++AG M L+Y + L D+ + + + K+ E+ + Sbjct: 555 GYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGKVLESGL 614 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFS 722 ++ I G L AD + + Q+ ++SNA+ F+ +G TV L K A + Sbjct: 615 TLE-IEAGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTVTLSLTPFKGAAGEDRVRVA 673 Query: 723 VKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + G I PE M + F + V H +G GLGL++ +S I +HGG ++I S Sbjct: 674 CADTGIGIAPEHMVRLARPFEQ-VEGQHSKTTQGTGLGLALTKSLIEMHGGRLNIESEPG 732 Query: 780 GVTTINCRIPSK 791 T ++ +P++ Sbjct: 733 VGTVVSFDLPTR 744 >gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 510 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 3/250 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 +VT+ R R + K A++ K+ F+ VS+ELR+PL ++GF+D+L G L Sbjct: 213 DVTEMERLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLE 272 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +YV I S LL++VN +LD++ ++AG +L + +++ + + + + Sbjct: 273 NDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELLMESFPISETIASCEAMLGLQA 332 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + + +G AD++ + Q+ + NA+ F+ G V + AAR+ G + Sbjct: 333 KEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGGMLKLT 392 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I D + + F V N + + G GLGLS+V+ + LHGG I+S Sbjct: 393 VSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFVITSKPAE 452 Query: 781 VTTINCRIPS 790 T + +P+ Sbjct: 453 GTVVTITLPA 462 >gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1044 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 162/305 (53%), Gaps = 15/305 (4%) Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAE 552 G L A+ TSF ER+ + + L + L +S+IP + ++ ++ V++T+ V + Sbjct: 538 GLLLIASGETSFSFEREHVTLAGQNLK-TQLYWSVIPGYEVDYSRVLVCIVDITELVNIQ 596 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 L + E A++ K+ F+ ++S+ELR+P I+G +L+ + L+ +Q ++V Sbjct: 597 EELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQNT---DLDDEQQEFVNL 653 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 SS L++DIL+L+ ++AG M + + L +LL + + + H+ + ++ + Sbjct: 654 SIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSGLFSAEGHQKGLALEFL 713 Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD--FIFSVKNN 726 D + + D R+ Q+ ++ NA+ F+ +GS + +A GD FSV + Sbjct: 714 MDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLSATKGGDVRVQFSVFDT 773 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPED +FN FV ++ + +G GLGLS+V+ ++L G++S+ S + TT+ Sbjct: 774 GIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLMNGNISVESEVDRGTTV 833 Query: 785 NCRIP 789 + +P Sbjct: 834 HVVLP 838 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607 E A + +E ++A+E K+ F+ +S+ELR+PL I+GF+++++ +G LN++ Sbjct: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I S LLNL+N+ILDL+ ++AG +L+ S I L D++ E + + E NI Sbjct: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I D L S AD + + Q+ +LSNA+ F++ G V + G +I S+K+ Sbjct: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKD 407 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 NG I E +V F S A + +GVGLGL I +S + HGG I S EGV Sbjct: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467 Query: 783 TI 784 I Sbjct: 468 VI 469 >gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1158 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 132/230 (57%), Gaps = 3/230 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L E+ E L +A K+ F+ ++S+ELR+PL + + + LL ++ G+L+++Q ++ Sbjct: 468 QAQIQLEERAEELSRASRYKSEFLANMSHELRTPLNSSLILSKLLSDNQKGNLDAEQVKF 527 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ LLNL+NDILD++ V+AG ++L+ TI+L DL + + + N+ Sbjct: 528 AQSIYSAGNDLLNLINDILDISKVEAGKLQLSPETILLGDLAASLNSTFGPLAGQKNLAF 587 Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V+ + G + V+DRQR QI +LSNA+ F+ G + + + G F+V+++G Sbjct: 588 EVVVEPGTPATLVSDRQRAEQILKNLLSNAIKFTEAGRVSLSVSPQPGGMIGFAVQDSGI 647 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ + +F F RR G GLGLSI L GG +++ S Sbjct: 648 GIRQEQQQIIFEAFRQADGTTSRRYGGTGLGLSISRDLTALLGGSITVQS 697 >gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1237 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 17/297 (5%) Query: 510 ERKSLQGTLELLSDS------VLEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNE 560 E++ + G EL LE + P+ + L +++++ AE+ L E+ E Sbjct: 533 EQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDISERRAAEQKLREQAE 592 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 L A+ K+ F+ ++S+ELR+PL +I+ +D L+ + G+L KQ+++ + + + + L Sbjct: 593 QLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLTEKQTKHADIVHRAGSDL 652 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+ND+LDLA V++G M+L I + D+L E+ S+ + + D + Sbjct: 653 LQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLSLHTQIDAGVPRV 712 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDM 734 + +DR RL QI +LSNA+ F+ +G + ++ + FSV++ G I Sbjct: 713 IHSDRVRLHQILRNLLSNALKFTDQGEVTLTVSSEGRQEDERELLCFSVRDTGIGIDPAQ 772 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF F RR G GLGL+I + G + + S+ +T R+P Sbjct: 773 HEQVFQAFQQIDGSTSRRFGGTGLGLAITRQLVLALDGDIGLQSTPGQGSTFTVRLP 829 >gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 657 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 113/491 (23%), Positives = 207/491 (42%), Gaps = 31/491 (6%) Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL----PEQL 369 ++ + +FD + L N+ F +L +I +F + E + + + P +L Sbjct: 179 HMPQGVCLFDNDLNLVVANKIFFDLTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAEL 238 Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429 + + + + E H P+G + V P G I F ++T + E Sbjct: 239 ANRRLE-----IARRMEPHAFDRIRPDGTVIEVRGNPIPGRGFISTFTDITARAKAEESL 293 Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488 + +D V + DG I L+ A L T++ + Sbjct: 294 REAATMARAMLDAPGLLVLLIRMDGTIVDLNQEAATGLSSTKDAMIGANIFTVMPPKVAE 353 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFV 543 R + + +F F+DER E ++ P P Q M+ Sbjct: 354 RRFAYAQ-QAVFEGHAVYFEDERDG----------RWFETTMTPYPMDQDGVHRVMIIAH 402 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT AE+ L E + A+ K F+ +S+ELR+PL I+GF++++ G + Sbjct: 403 DVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPVG 462 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y + I+++ LL ++NDILD++ ++ G L + ++L++ + + T+ Sbjct: 463 DRYRIYGQDINSAGQHLLAMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTRAE 522 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFS 722 IR++ L S + D +R QI +L NA+ F+ G +V L+ A + +G F Sbjct: 523 AAGIRLREDLPETLPSLMIDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMAFH 582 Query: 723 VKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V + G + E + S F + + R + G GLGL + +S LHGG + I S+ Sbjct: 583 VADTGIGMSEADIAIALSPFGQVDTGLDR-RFEGAGLGLPLAKSLAELHGGSLEIISTPG 641 Query: 780 GVTTINCRIPS 790 TT++ P+ Sbjct: 642 EGTTVSVYFPA 652 Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust. Identities = 56/286 (19%), Positives = 102/286 (35%), Gaps = 40/286 (13%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 +L +L I++F + L NR F +L + FL +++ F + + Sbjct: 23 VLDHLDQGISVFSADLRLILWNRRFTDLHDFPEGFLTHGLGFADIIRFNAQRGEYGSDCD 82 Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV--QV----- 423 + + + H+ PNG L +I P GG + + ++TV QV Sbjct: 83 VEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQVAENLR 142 Query: 424 ------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465 D E ++ + T+ H+ +GV +F D + ++N F Sbjct: 143 DSNDRLDQMVERRTQALQDSEERHRAYGEFLEATVKHMPQGVCLFDNDLNLVVANKIFFD 202 Query: 466 LWKTEENRLSPGTHIRNIAATCSRY--YNESDGWDL------FAAIITSFDDERKSLQGT 517 L + + G + ++ Y D +L A + +R GT Sbjct: 203 LTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAELANRRLEIARRMEPHAFDRIRPDGT 262 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563 V+E P+P + TF ++T +AE +L E R Sbjct: 263 -------VIEVRGNPIPGRGFISTFTDITARAKAEESLREAATMAR 301 >gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222] gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222] Length = 1067 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 143/281 (50%), Gaps = 16/281 (5%) Query: 508 DDERKSL----QGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 DD R SL QG EL L +E I +A+ LT D+ RA+ E + Sbjct: 338 DDTRPSLDKLIQGKDELSLFAQQVERLTIEREHAKEKLTIAK-EDAERAKEDAEEAKDHA 396 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A + K+SF+ ++S+E+R+PL +IG +++L + L Q YV+ I SS +LL+ Sbjct: 397 IQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQRDYVDTIETSSQLLLS 453 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 L+NDILD + +++G++ ++ + + + + ++ +A K E I + V IS + Sbjct: 454 LINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVM 513 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QI +SNA+ F+++G + L A +N FSV++ G I + K Sbjct: 514 IDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQ 573 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLGL+I + L GG + + S Sbjct: 574 IFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 614 >gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 771 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 182/407 (44%), Gaps = 52/407 (12%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 TV+ DL + + I+ L E ++ D R+ L N F+ L K ++ ++PGT Sbjct: 370 TVEADLRLR---------DAIETLPEAFVLWDSDNRLVLCNSHFQRLHKLPDSAIAPGTS 420 Query: 480 IRNI----------AATCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELLS 522 + C G F A DD ER++ G + Sbjct: 421 YETVIEVGQMPEIRTRQCDVGAGSPPGARTFEA---QLDDGSWLHISERRTKDGGYVAVG 477 Query: 523 DSV----------------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 ++ L ++ L +Q L + + A + EKN A +A+ Sbjct: 478 TNITRIKAHEQKLVDNDLRLRATVADLKISQVKLERQAIELADLARKYSEEKNRA-EEAN 536 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVN 625 + K+ F+ ++S+ELR+PL IIGF++++ + G+L S++ Q Y I S LL ++N Sbjct: 537 QAKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVIN 596 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684 DILD++ ++AG M+L + L L E + +A + ++ ++ I DG VADR Sbjct: 597 DILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGI--PIVADR 654 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + + QI +LSNA+ F+ G V +++ + + ++G I + + F Sbjct: 655 RAIKQILINLLSNAVKFTPDGGRVTVRSRTLEDSIVMMIADSGIGIAPQSLRRLGQPFEQ 714 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + G GLGL+I +S LHGG + + S+ T + +P Sbjct: 715 VESQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32] gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32] Length = 1067 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 143/281 (50%), Gaps = 16/281 (5%) Query: 508 DDERKSL----QGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 DD R SL QG EL L +E I +A+ LT D+ RA+ E + Sbjct: 338 DDTRPSLDKLIQGKDELSLFAQQVERLTIEREHAKEKLTIAK-EDAERAKEDAEEAKDHA 396 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A + K+SF+ ++S+E+R+PL +IG +++L + L Q YV+ I SS +LL+ Sbjct: 397 IQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQRDYVDTIETSSQLLLS 453 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 L+NDILD + +++G++ ++ + + + + ++ +A K E I + V IS + Sbjct: 454 LINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVM 513 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QI +SNA+ F+++G + L A +N FSV++ G I + K Sbjct: 514 IDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQ 573 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLGL+I + L GG + + S Sbjct: 574 IFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 614 >gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 572 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RK ++++ F+ +S+ELR+PLT + G+T+ L L + +Y+ I + L Sbjct: 343 RKLEDLRKEFLGDISHELRTPLTYLQGYTEAL-LDGLVENREEHDRYLNVILEETLRLRR 401 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 LV+++L L+ ++AG + + + + DL+ V + + + NI +K+ I D + S Sbjct: 402 LVDELLQLSHIEAGHLNIKKDRVSIKDLIERVSKKVLPICDDKNIELKIEIED--IPSIT 459 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD R+ Q+ ++ NA+ +SS S +I+KA I SVK++GS IPED ++ R Sbjct: 460 ADEDRIEQVMINLIDNAVRYSSNDSKIIIKAQSCKEGIIISVKDSGSGIPEDELPFIWER 519 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + Q+ G GLGL+IV+ + LHGG V + EG + +P Sbjct: 520 FYKVDKSRTRQKSGTGLGLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569 >gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 928 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A+ K+ F+ ++S+ELR+PL I+GFT LL + L S+Q +Y++ I Sbjct: 448 LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQIIQ 505 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+N++LDL+ ++AG + LN + L LL + + K N+ + + Sbjct: 506 QSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQLQ 565 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPE 732 + +V D +L Q+ +L NA+ F+ GS T+ + F V++ G I Sbjct: 566 QDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGITP 625 Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D + +F FV ++ R ++G GLGL+I + +++L GG ++I S +G IP Sbjct: 626 DEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIP 683 >gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1] gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1] Length = 716 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 53/387 (13%) Query: 422 QVDLETKYNTLVKVQGETIDHLS---EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 +V+LE + Q D L+ +G A+F D R+ +NPAF ++ + T Sbjct: 67 EVELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLIFDGISDVTEGAT 126 Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 + R E DL Q + + + V + +P+PN Sbjct: 127 Y-----EAILRVATEEGIVDLQG-------------QNADDWVEEMVARWEKVPIPNVDV 168 Query: 539 ML--------------------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 L V++T ++R ER L+E +A A+ K+ F+ ++S+ Sbjct: 169 KLWNGAYIRLNDKQTPQGDFVSLSVDITPNIRRERELSEARDAAEAANRAKSHFLANMSH 228 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+P+ ++ +LL+ + +L+ +Q Y + I +S LL ++NDILD + ++AG + Sbjct: 229 EIRTPMNGVVSMAELLRDT---ALDEEQQMYADTIRSSGEALLVIINDILDFSKIEAGKL 285 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697 +L+ T LN ++ E+ + I + ++ +++ D L + DR R+ QI + ++ N Sbjct: 286 ELHEETFDLNAMVGEIFRLIQPGIASKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGN 345 Query: 698 AMDFSSKGST---VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 A+ F+ KG V+ D D + V+++G I D + VF F R Sbjct: 346 AVKFTEKGHVTVRVLSVPPMDQPDALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANR 405 Query: 752 R--GVGLGLSIVESFINLHGGHVSISS 776 R G GLGL+I + I+L GG + + S Sbjct: 406 RHDGTGLGLAITKRLISLMGGKMWLES 432 >gi|226357739|ref|YP_002787479.1| histidine kinase, classic [Deinococcus deserti VCD115] gi|226319982|gb|ACO47975.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 872 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 176/389 (45%), Gaps = 49/389 (12%) Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTH--IRNI 483 +++N LV ++ L EGV GR L+NPA + L T E+ + H I + Sbjct: 507 SRFNELV------LNSLGEGVTTIDAQGRSTLANPAALKMLGYTAEDFMGRPQHALIHHS 560 Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----------LEYSIIPL 533 S + E+ +++AA + G + +D V +EY+ P+ Sbjct: 561 YPDGSPFPREA--CEIYAAFV----------DGQVHRANDEVFWRKDGSSFPVEYTSTPI 608 Query: 534 PNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 N ++L F +VT+ RAE L + N+ LR+++ F S++L+ PL + Sbjct: 609 LNESGEIEGSVLVFRDVTERQRAEATLRQANDELRRSNAELEQFAYVASHDLQEPLRTVT 668 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI---MKLNYSTI 645 F+ LL G +++ YV I+ + + L+ D+L + V G +++N I Sbjct: 669 SFSQLLAKKYAGQTDARGQMYVRLITEGTQRMTQLLQDLLAFSRVAKGAADPVRVNTGVI 728 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--S 703 L +V Q +A ++ ++ + G++ + D +L Q+F ++ NA+ FS Sbjct: 729 -----LAQVSQDLAAQIQHTGAQLHI---GEVPDVLGDASQLRQLFQNLIGNALKFSHPE 780 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 +G V + A D G F V++NG I + + +F F R Q G G+GLSI Sbjct: 781 RGPVVWVGAECDGGLVRFRVQDNGVGIAPEYFERIFTIFQRLHTREQYEGSGIGLSIARK 840 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792 + HGG + + S+ TT +P+ E Sbjct: 841 IVERHGGRIWLESTPALGTTFYFTLPAVE 869 >gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1098 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 13/259 (5%) Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 S+ PL + + ++T + E AL + E A+ K+ F+ ++S+ELR+PL I+ Sbjct: 586 SVSPLSDNTVLWVARDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIIL 645 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GFT LL ++ SLNS+Q +Y++ I+ S LL L+ND+L+++ ++AG + L+ + L Sbjct: 646 GFTQLLLRNR--SLNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLY 703 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 LL+ ++Q A K +++ + + ++ AD +L Q+ +L NA+ F+ G Sbjct: 704 GLLDRLQQMFALKAQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIGQ- 762 Query: 708 VILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGL 758 V L+ N + FSV++ G I + +F FV + A + + G GLGL Sbjct: 763 VTLRVETPNQNITPDEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQKAQEGTGLGL 822 Query: 759 SIVESFINLHGGHVSISSS 777 I + F+ L GG + ++S+ Sbjct: 823 PISQRFVQLMGGDIRVNST 841 >gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1305 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 6/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A++ K+ F+ ++S+ELR+PL I+GFT LL ++ SLN KQ +V I Sbjct: 822 LKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLL--ARDSSLNQKQQDFVGIIG 879 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+ND+L+++ ++AG + LN + L LLN +++ K N+++ D Sbjct: 880 RSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLIFHCD 939 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKNNGSSIP 731 + ++ D +L Q+ ++ N + F+ GS ++ ++ + +N I F V++ G I Sbjct: 940 PDVPQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEVEDTGPGIG 999 Query: 732 EDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F FV + R + G GLGL I + F+ L GG++S++S+ +T + IP Sbjct: 1000 TEELDILFQAFVQTVSGRKSQEGTGLGLPISQKFVELMGGNISVNSTLHKGSTFSFEIP 1058 >gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] Length = 930 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL KA IK+ F+ ++S+E+R+PL IIGFT LL S L +++Q +Y+ I S+ Sbjct: 281 RKEAL-KASHIKSEFLANMSHEIRTPLNGIIGFTKLLHRSPL---SARQEEYLSTIHKSA 336 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGK 676 LL ++ND+LD + ++AG + L+++ + L+DL+ +V+ +A E + + +I Sbjct: 337 ESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASIIYSDV 396 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPE 732 + + D R+ Q+ + +LSNA+ F+ GS V+ L+ R I +V + G + + Sbjct: 397 PVALLGDPLRIRQVLTNLLSNAIKFTDHGSVVVRAMLEEDRGAEAIIKITVTDTGHGLSQ 456 Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + K++F F + R Q G GLGL+I + + GG + I S +E +T Sbjct: 457 ENQKNLFRAFTQTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGST 509 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 16/226 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ + R DE FV VS+ELR+PLT+I G +L + L + +S+Q + + Sbjct: 706 RDVTERKQIERMKDE----FVSVVSHELRTPLTSIYGSLGMLASGLLPT-DSEQGKRLLQ 760 Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIR 668 I+A ST L+ L+NDILD+ +++G K+ + DL+ + V Q +A K + Sbjct: 761 IAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVT-LS 819 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I +S G +AD R++Q + +LSNA+ FSS GSTV L A ++ + + ++K+ G Sbjct: 820 ISALS----GQVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQEGDEVLLTIKDTGR 875 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 IP D +S+F RF V ++ G GLGL+I +S + HGG + Sbjct: 876 GIPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRI 921 >gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6] Length = 717 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/372 (27%), Positives = 180/372 (48%), Gaps = 62/372 (16%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 G+ +L G+A+ +G++ SNPA+ W G H +R+ Sbjct: 359 GQVFSNLPTGLALLDINGKVLRSNPAWDLHW---------GLH------GVARHETFHVT 403 Query: 497 WDLFAAIITSFDDERK--------------SLQGTLELLSDSV-LEYSIIPLPNAQTMLT 541 DL ++ D K L T+ L++ LE +P +++ +T Sbjct: 404 LDLIEHLLPRLQDPHKLTTFFEQMQRTPGNDLLTTVHLMNPRQDLELRSVPTRDSKDRIT 463 Query: 542 --FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 V+D R R+AD +KN FV VS+ELR+PLT+I+G+T+LL+T + Sbjct: 464 GRLWAVSDVTRE-----------READRLKNEFVSIVSHELRTPLTSILGYTELLRTREF 512 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ Q++ + + L LV D+L ++ ++AG +KLN I L +++ E+ + Sbjct: 513 AP--EERQQFITTVFNEAERLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLN 570 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715 T + ++ + I + G++ ADR ++ QI +L+NA+ +S G + L RD Sbjct: 571 TSLIKHRLLIDIT--GEIPPIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRD 628 Query: 716 -NGD------FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 GD + SV++ G + PED+ + ++ RF V N + + G GLGLSI + + Sbjct: 629 LPGDHPLGQWIVVSVRDEGIGMAPEDLPR-IWERFYRVDNTNTRKIGGTGLGLSISRALV 687 Query: 766 NLHGGHVSISSS 777 LHGG + ++S+ Sbjct: 688 ELHGGRIWVTST 699 >gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas aromatica RCB] gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas aromatica RCB] Length = 856 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 179/384 (46%), Gaps = 26/384 (6%) Query: 404 VTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 V + P G GTI F ++ + E K + + I+ + + A+F + R+ L N Sbjct: 333 VAARPDGEGTIISFRDIADRHAAEIKLQRFQQRLVDAIEAMDDAFALFDGEDRLILHNLR 392 Query: 463 FRSLWKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT- 517 F L+ E + + G I +IA Y +DG + + A T + R++ + Sbjct: 393 FAELFSPESSTIRIGMSFSEFIHDIAVQ-GLYPQTTDGGNDWLA--TRMEMHRQAAGSSE 449 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + L + S L + T++ + +V++ RA A + ++A K+ F+ +S Sbjct: 450 IPLANGSWLRITERHTREGGTVVIWSDVSNLKRALIAADQGSQA-------KSEFLARMS 502 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +ELR+PL I+GF +L+ LN Q +YV +I LL L+N+ILDL+ +++G Sbjct: 503 HELRTPLNAILGFARVLEKDAASPLNDAQQEYVHHILHGGQHLLGLINEILDLSAIESGK 562 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 +K+ I L +L+E I I +K IS + + ADR+RL Q+ +LSN Sbjct: 563 LKVEIEDIDLPSVLHECLALIKPLASNREITLK-ISGSESATVAADRKRLKQVLLNLLSN 621 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRG 753 A+ ++ G V + + + G IP ++ + VF F + N+ G Sbjct: 622 AIKYNRHGGEVQVNIGATPSGIRLDISDTGQGIPPELAQRVFQPFDRLGLENSE-----G 676 Query: 754 VGLGLSIVESFINLHGGHVSISSS 777 G+GL+I + L GG + S+ Sbjct: 677 TGIGLAITRRLVELMGGSICFEST 700 >gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 1152 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + L +A K+ F+ ++S+ELR+PL + + LL ++ G+L +Q ++ I +S Sbjct: 473 KAQELEQASRYKSDFLANMSHELRTPLNSSLILAKLLADNRDGNLTEEQVKFARTIQSSG 532 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+NDILDL+ ++AG M +N + L +++ + E + +V + L Sbjct: 533 NDLLALINDILDLSKIEAGQMDINAEPVSFRRLASDLTRMFEPLAGEKGLTFRVEAHDTL 592 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 F +DRQRL Q+ +LSNA+ F+ +GS V+L+ + N F+V + G I + + Sbjct: 593 PDLFDSDRQRLEQVLKNLLSNALKFTERGS-VVLRMSAANNKVHFAVSDTGIGISAEQQQ 651 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEG 780 S+F F R+ G GLGLSI L GGH+ + S DEG Sbjct: 652 SIFEAFRQADSTISRKYGGTGLGLSISRELSRLLGGHIELKSEPDEG 698 >gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 463 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 134/239 (56%), Gaps = 9/239 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ D +++SF+ VS+ELR+PL +II +++LL G LN +Q Q V+ I+ LL Sbjct: 204 LREMDRLQSSFLGTVSHELRTPLASIIAYSELLSEGITGMLNPEQLQCVQSITEMGRTLL 263 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF 680 +L+ ILD++ ++AG ++L ++ + + +++ S+ + ++++V+ + + Sbjct: 264 DLITSILDISQLEAGKLRLAFAPVDMAEVVVSAVSSVTPQSRRKGLKLEVVLPELRQPRV 323 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGSSIPEDM 734 +AD+ RL Q+ +L+NA+ F+ +G S V + + F V++ G I +D Sbjct: 324 LADKGRLYQVLVNLLANALKFTPEGHVRVRLSEVGPQEELGTLGYRFCVEDTGVGIRQDQ 383 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F F V ++ + GVGLGLSIV+ F+ HGG V ++S + +PS+ Sbjct: 384 LERIFQTFYQVDSSSTREFGGVGLGLSIVKRFVEGHGGKVLVTSQPGQGSCFTAVLPSR 442 >gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 513 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 7/246 (2%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF++++K G+ + Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPAYR 297 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LLNL+N+ILDL+ ++AG L+ + L + E + + + Sbjct: 298 EYATDIHDSGMHLLNLINEILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSKGQ 357 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 + D L AD + L QI +LSNA+ F+ G + +K +G SVK++ Sbjct: 358 TFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDS 417 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPED +V + F S A + +G GLGL IV+ I+LHGG + S T + Sbjct: 418 GPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEV 477 Query: 785 NCRIPS 790 P+ Sbjct: 478 IVTFPA 483 >gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1168 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L E+ E L++A K+ F+ ++S+ELR+PL + + LL + G+L+ +Q ++ Sbjct: 479 RIQAQLEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENARGNLDEEQVKF 538 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ L +L + E + Sbjct: 539 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLAGMLESLSDVFEPLARERGLSF 598 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ +L + DRQR QI +LSNA F+ +G + + D F+V ++G Sbjct: 599 EIERQAELPQTLFTDRQRAEQILRNLLSNAFKFTDRGGVTLRVSRHDEQTLAFAVSDSGI 658 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +F F RR G GLGLSI L GG + +SS +T Sbjct: 659 GIAPDQQAVIFEAFRQADGTTNRRYGGTGLGLSISRDLAGLLGGSIGVSSVPGEGSTFTL 718 Query: 787 RIPSK 791 +P + Sbjct: 719 LLPER 723 >gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 899 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E +D++K++F+ ++S+E+R+PL I+GF+ ++ S ++ +Y E Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + A++ LL L+N+ILDL+ +++GI++ Y + L+ L E+ + + + + ++ Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCPQ-GVELRFD 611 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + S +D+ R+ Q+FS ++ NA F+++GS V ++ +F VK+ G I Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI ++ I GG +++SS TT +P Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 559 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 142/255 (55%), Gaps = 3/255 (1%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F +T++ + + + + N +++ + +K+ F+ +S+ELR+PL +I GF ++ Sbjct: 291 LIHFTILTNARKMIKTIEQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGI 350 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G +N +Q + + + +SS LLNL+NDILD++ ++AG M + + D+++EV Q++ Sbjct: 351 SGEINEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNV 410 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + +++ ++ +D++R+ QI ++SNA+ F+ KG V +K D Sbjct: 411 SLLISKKEVKLITEIPDEIPEIYSDKRRVFQILLNLVSNAIKFTEKGE-VRIKCEVDGNK 469 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G I E+ +++F F +S + R + +G GLGL + + + L GG + + S Sbjct: 470 LKISVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVES 529 Query: 777 SDEGVTTINCRIPSK 791 +T +P K Sbjct: 530 EYGKGSTFTFTLPLK 544 >gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1053 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 14/252 (5%) Query: 544 NVTDSVRAERAL-TEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +VTD + AERA TE AL R+A K+ F+ +S+++R+P+ I+G T L K + Sbjct: 643 DVTDMLAAERAAKTELERALKLSREASLAKSDFLSAMSHDIRTPMNAIMGMTTLAKANSG 702 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + + ++ ISA+S LLNL+ND+LD+ ++ + LN I L DL+ ++ + IA Sbjct: 703 DPV--RVLDCLQKISAASGHLLNLINDVLDMNKIERAQITLNREKIYLPDLIKQIGEIIA 760 Query: 660 TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + +++ G + F D R+ QI IL NA+ F+ +G +V A G Sbjct: 761 PQAEQAGLCCEILPGGIRNPCFYGDTLRISQILINILGNAVKFTPRGGSVRFLAEEIPGA 820 Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + F+V++ G + ++ +F FV + + G GLGLSIV+ ++L GG Sbjct: 821 AGSGQACYRFTVRDTGIGMAKETLDHLFEPFVRSRAVSRVEGTGLGLSIVKGLVDLMGGS 880 Query: 772 VSISSSDEGVTT 783 VS+ S E TT Sbjct: 881 VSVQSEPEKGTT 892 >gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 568 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 141/263 (53%), Gaps = 10/263 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNII 588 A+ + +++T V E+AL E AD +K++F+ +S+ELR+PL +II Sbjct: 301 AEILSIGIDITQLVHTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNSII 360 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GFT +L G +N +Q++ + + S+ LL+L++D+LD++ ++AG +K+ + L Sbjct: 361 GFTGILLQGLSGPINDEQAKQLGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPFDLR 420 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + + +V QS+ + + + ++G+ D +R+ Q+ +LSNA+ F+ +G V Sbjct: 421 ESILKVVQSVRPLAEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQGG-V 479 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 + R+ F+ SV+++G I ++ + +F F V + G GLGLSI + + Sbjct: 480 RVSCGREGDAFLTSVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVE 539 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + + SS +T +P Sbjct: 540 LMGGEIRVESSPGKGSTFAFTLP 562 >gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 784 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 11/248 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 A++ EK A A++ K+ F+ ++S+ELR+PL IIGF+D++ G + + + S Y Sbjct: 538 ADKYQEEKTRA-EAANKAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPVGTDRYSDY 596 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S T LLN++NDILD++ ++AG M + T+ ++ + + + E NI + Sbjct: 597 CKDIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAEDASRIVTGAATEKNITV 656 Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 V+ + S AD++ L QI +L+NA+ F+ TV LK AR GD + F V + Sbjct: 657 TTDVVEN---VSVHADKRALKQILLNLLANAVKFTPDNGTVTLK-ARPRGDKLHFEVIDT 712 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I E + + FV N +G GLGL+I S + LHGG + I S + TT+ Sbjct: 713 GIGISERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGGALVIKSEVKKGTTV 772 Query: 785 NCRIPSKE 792 + +P E Sbjct: 773 SFTLPLAE 780 >gi|21112215|gb|AAM40473.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574704|gb|AAY50114.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 304 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 56 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 115 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ L +V+D+LDLA ++AG + ++ L DL ++ N + Sbjct: 116 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDP 175 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + + FSV++ G IP ++ Sbjct: 176 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 235 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 236 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 279 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + IK+ F+ +S+ELRSPL I+G++ LL+ KL +KQ+ V I ++ + + L+ Sbjct: 1060 NRIKDEFLAVLSHELRSPLNPILGWSRLLQNGKLDEAKAKQA--VNIIERNAKLQVELIE 1117 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD++ + G + L S I L ++ +++ N+IRI+V DG++G D Sbjct: 1118 DLLDISRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDST 1177 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+ +LSNA+ F+ G V ++ + SV + G I D VF+ F Sbjct: 1178 RLQQVMWNLLSNAVKFTPTGGLVEIRLEQVGNQAQISVSDTGKGISPDFIPYVFDYFRQA 1237 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV + LHGG + S EG+ T ++P Sbjct: 1238 DSATTRKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLP 1284 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 5/235 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ E L + D K +F +VS+E R+PLT ++ + L T+ L+ +Q Q + I + Sbjct: 319 KRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLTAD--DLSQEQRQEMTLIHRN 376 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVN +LD + ++AG ++ Y L+ E+ + + + ++ V + Sbjct: 377 GLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQFSVTCEPL 436 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 DRQ +I +LSNA F+ G+ + L + +V + G IP+ Sbjct: 437 PELVYVDRQMWEKIILNLLSNAFKFTFSGA-IALTLRQVQHQVEITVTDTGIGIPQAELP 495 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V A + G G+GL++V+ + LHGG V + S + TT +P Sbjct: 496 HLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTITVP 550 >gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009] gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris CGA009] Length = 779 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609 A + EK A +A++ K+ F+ ++S+ELR+PL IIGF++++ + G+L S++ Q Y Sbjct: 530 ARKYADEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEY 588 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S LL ++NDILD++ ++AG M+L + L + E + +A + ++ + Sbjct: 589 CHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLEL 648 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + ++ VADR+ + QI +LSNA+ F+ V ++ G + + + G Sbjct: 649 RSELNDQI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRGHLAGGSIVLMIADTGIG 707 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + + F V + G GLGL+I +S +NLHGG + + S+ T + Sbjct: 708 IPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVS 767 Query: 788 IP 789 +P Sbjct: 768 LP 769 >gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 818 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 34/317 (10%) Query: 484 AATCSRYYNESDGWD----------------LFAAIITSFDDERKSLQGTLELLSDSVLE 527 A+ R Y+ES G+ LF I D KS+ G + ++ S++E Sbjct: 238 ASMKRRGYSESLGYHGTLRQNVHSVERSLETLFNTIPLKVD---KSVSGLV--ITQSIVE 292 Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 ++ L F ++T R E+ L E +A+ K+SF+ ++S+E+R+PL I Sbjct: 293 ILLVLLIVGILYYIFYSIT---RMEQGLIFAREKEEQANSAKSSFLANMSHEIRTPLNGI 349 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG T++L SKL ++ Q Y+ I++SS LL L+NDILDL+ +++G +++ T + Sbjct: 350 IGMTEILTDSKLTAI---QKDYLATINSSSQTLLMLINDILDLSKIESGHLEICPHTCNI 406 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 +++ + IA K + +I +++ D + +V AD Q+L Q+ + SNA+ F+ GS Sbjct: 407 KEVIYDTVALIAPKAQQRSIEMRITIDQNIPCYVRADEQKLRQVLMNLASNAVKFTHSGS 466 Query: 707 TVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSI 760 L+ + D I FSVK+ G I E+ VF F + G GLGLSI Sbjct: 467 VSFKLQLEVETTDTICILFSVKDTGIGIDENKHMQVFEEFQQEERNTSVEYGGTGLGLSI 526 Query: 761 VESFINLHGGHVSISSS 777 + + GG ++I+SS Sbjct: 527 STKLVRMMGGEIAINSS 543 >gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 436 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 133/248 (53%), Gaps = 2/248 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE +L + + L A IK++F+ +VS+ELR+PL +IIGF+ +LK + +L Sbjct: 183 DISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPLNSIIGFSHILKENNENNLT 242 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y + S LL L+ND+LD++ +++G + LN L++EV +S+A + Sbjct: 243 ENQLKYCSNVEISGKHLLALINDVLDISKIESGEARFEPELFKLNLLIHEVVESLAPFAN 302 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + +I +++ K ADR ++ QI +L+N++ F+ ++L D + S+ Sbjct: 303 KKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPACGKIMLTVGVDEENINISI 362 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +NG I + +F F Q G GLGLSI + ++ +H G + + S Sbjct: 363 SDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAKKYVEMHKGQIWVKSELGVG 422 Query: 782 TTINCRIP 789 TT N +IP Sbjct: 423 TTFNIKIP 430 >gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1255 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 11/257 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L E + AD K+ F+ ++S+E+R+P+ ++G +LL S +L+ Sbjct: 679 DITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLD 735 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + + I S LL ++NDILD + +DAG + L+ + L + + +V ++T+ Sbjct: 736 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 795 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719 E ++ + V + +LGS F+ D R+ QI + +L NA+ F+ +G ++ + R Sbjct: 796 EKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERMPTGTKL 855 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G IPE+ K VF +F RR G GLGL+I + L GG + + S+ Sbjct: 856 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESA 915 Query: 778 DEGVTT--INCRIPSKE 792 + +T +PS E Sbjct: 916 EGKGSTFWFEVTLPSAE 932 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 18/142 (12%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 FE + + D + +LV ++ +D + GV V G D R ++ N AF W+ + NR Sbjct: 157 FEEMAPKQDEDVSSQSLVNLR-TMVDSMPIGVVVLGADMRAEVINSAFHDFWRIDPNRAG 215 Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--------RKSLQGTLELLSDS--V 525 G+ R + S D F A T++ R + G+ +L + Sbjct: 216 IGSSFREL-------MEASRAIDPFGADETAWQRHVAEREAEIRAGVAGSRQLPHNDGRT 268 Query: 526 LEYSIIPLPNAQTMLTFVNVTD 547 L S+ L + ++++V+VTD Sbjct: 269 LVASLASLAGGKRLISYVDVTD 290 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/396 (27%), Positives = 183/396 (46%), Gaps = 67/396 (16%) Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-------------- 467 Q++ E + +LV + + GV V G D +IK NP F + Sbjct: 633 QIEDELRMMSLVAAETDN------GVVVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPGD 686 Query: 468 -----KTEENRLSP-GTHIR---NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 KTE++ +S GT IR +A + Y + + L I+ D+ Sbjct: 687 FLHGPKTEQDAVSCLGTAIRKQERVATDITNYGKNGEPYILHIEIMPIRDE--------- 737 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 S V+E+ I L + NVT+ RA++ + E EA A+ K+SF+ +S+ Sbjct: 738 ---SGEVVEF--IALES--------NVTEQRRADKEIKEAKEAAELANRAKSSFLAAMSH 784 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+PL ++G DLL+ ++L S Q V SS L+ +++D+LD + ++AG + Sbjct: 785 EIRTPLNGVVGTIDLLEHTRL---ESNQRDMVRTARDSSLTLMGIIDDVLDFSKIEAGKL 841 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +L+ + + L ++ +S+ +NNI + V + + + D RL QI + NA Sbjct: 842 ELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNLTGNA 901 Query: 699 MDFSS-----KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 + FS+ + V + AA ++ + SVK+NG + D + +F FV Sbjct: 902 IKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQAESS 961 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGV 781 RR G GLGL+I + + GGH+ + S D+G Sbjct: 962 TTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGA 997 >gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora sp. 8437] Length = 585 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 4/231 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A+R+ ++++ FV +VS+EL++P+T++ GF + L + ++ +++E I A S L Sbjct: 356 AIRRLEKMRTEFVANVSHELKTPVTSLRGFAETLLDGAAEDPDMRK-EFLEIIQAESLRL 414 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ D+LDL+ +++ M L+ TI + +LL +++ +M + + +V S+ + Sbjct: 415 ERLIADLLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFPVQ 474 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 V D R QI +LSNAM ++ G VIL A R D+ V + G IP + +F Sbjct: 475 V-DPDRFSQILLNLLSNAMTYTPAGGEVILSAGRGETDWWIRVADTGIGIPGEDLPRIFE 533 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A + G GLGL+IV+ + H G + ++S T I P Sbjct: 534 RFYRVDKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFP 584 >gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] Length = 914 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 24/356 (6%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWK----TEENRLSPGTHIRNIAATCSRYYNESD 495 ID+++EG+ + G L N A + T E + +++ CS +E Sbjct: 459 IDNVNEGIQLVSVTGDTILINRALCGIVNFFNLTTETSIPKEDWLQHFQK-CSAQPDELI 517 Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555 + L A+I+ SF+D RK E+ I A + ++ R + Sbjct: 518 EF-LEASIMESFEDTRKYRYCM-------TAEHEIFVEVYATCLFDGQEKVGTIFVHRDI 569 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T + E D++K+ V VS+ELR+PL++++GFT+LL T + +Q++Y++ I Sbjct: 570 TREYEV----DQMKSELVSTVSHELRTPLSSVLGFTELLLTKNIKP--ERQNKYIDTIHR 623 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L NL+ND LDL +++G + N T+ LN++ E+ + HE + +I Sbjct: 624 EAVRLTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEI---VNRFRHEQKHNVHLIDKA 680 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + AD+ RL+Q+F ++ NA+ FS +G V + N S+K+ G I + Sbjct: 681 REVYVNADQDRLVQLFINLIGNAIKFSPQGGDVEILLENKNNSIQVSIKDEGIGISKQDI 740 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F + N+ R + G GLGLSI I H G + I S + TT+ +P Sbjct: 741 AQLFQKFKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLP 796 >gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 553 RALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R L+E+ N AL +A +K+ F+ +S+ELR+PLT IIG ++L+ GSLN KQ + Sbjct: 168 RQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSLNPKQLK 227 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V I S LL +ND++DL+ +++G + L + ++ L+ + + + NI Sbjct: 228 SVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQNIT 287 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + L D RL Q+ ++SNA+ F+ +G V ++A D V + G Sbjct: 288 LSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQVQVRVTDTGI 347 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 I ++F FV R G GLGL++V+ I+LHGG V + S Sbjct: 348 GIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVES 397 >gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 636 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 11/265 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +AQ+ L N + ++ L + N L + + +K F+ ++S+ELR+PL +IIGF++ Sbjct: 328 LTDAQSELKEANYDLDAKVDQ-LAQLNMRLHEMNRLKGEFLANMSHELRTPLNSIIGFSE 386 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + + SL KQ +Y + I S LL ++NDILDLA ++AG M + S ++ +L+ Sbjct: 387 VL--AGIDSLTDKQKRYAQNIQKSGRSLLEMINDILDLAKLEAGKMDVRLSEFRIDSILS 444 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + NI + + + L + D+ +L QI + +LSNA+ F+ +G + + A Sbjct: 445 AHCDMVRSLTEDKNIDLVLDIENDLPALYQDQAKLQQILTNLLSNAIKFTPEGGRITVGA 504 Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-------RGVGLGLSIVESF 764 D+ FI V + G I + + +F +F R G GLGLSIV+ Sbjct: 505 KGDSRGFIEMYVSDTGVGIADADKEIIFEKFRQGTAVLGRDNLTREYSGTGLGLSIVKEL 564 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 L GG VS+ S +T IP Sbjct: 565 CKLLGGEVSVESELGRGSTFRVTIP 589 >gi|300769974|ref|ZP_07079853.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300762450|gb|EFK59267.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 542 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 37/305 (12%) Query: 498 DLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 ++ A ++T+ E K L QG L+ ++Y PL T+ + V + + Sbjct: 78 EIIAIMVTAISKEDKYLIQG----LNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIK 133 Query: 557 EKN-----------------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 EKN E RK+ EI F+ ++S+E+R+P+ I+G T +L++S Sbjct: 134 EKNAELEQSKQELIRSKEEAEQARKSKEI---FLANMSHEIRTPINGIMGITQMLRSS-- 188 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +L+S+Q +V + ++S LL ++NDILD++ +D+G+MKL + +V DL +++ + Sbjct: 189 -TLSSEQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFK 247 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K N+ ++ D L ++V D RL QI S +SN + F+ KG + + +D Sbjct: 248 IKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKD 307 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 N FI FSVK+ G I + +F F A G + G GLGL+IV+ +L G Sbjct: 308 NSYFIRFSVKDTGIGIRAESLNKIFLAF-EQADDGITKKFGGTGLGLAIVKRLADLFNGS 366 Query: 772 VSISS 776 V +S Sbjct: 367 VDATS 371 >gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 926 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 137/239 (57%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ DG L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 792 KE---EVELVFDGHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901 >gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 1126 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 117/501 (23%), Positives = 227/501 (45%), Gaps = 40/501 (7%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363 IL +L + + I D + + + N F +WE+ F+ N EL + Sbjct: 328 ILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRY--DGT 385 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 + PE+L +++++F + E + W SN R + + +++ Sbjct: 386 RTPEEL--YAFRKHLFEAAEP-EPIEVGWAGGKSVIFDSRRISNDR--ILLTYADISAVR 440 Query: 424 DLETK-YNTLVKVQ--GETIDH----LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 + E + + T ++ GE + +S+G+A+ DG IK+SN A + + + + Sbjct: 441 EREKEIHETRAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNEAMADILQIPPHYIEA 499 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPL 533 G + C+ D D A I+ + R+ + + + + Sbjct: 500 GQGWLGMFEFCA---ARGDFHDAAADILEGWRANIAARQPISTVFHVGGERWVNMDATVS 556 Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + F +VT+ E L E AD K+ F+ ++S+E+R+P+ ++G +L Sbjct: 557 TGQHWVALFTDVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAEL 616 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + +L+++Q +++ I S LL ++NDILD + +DAG MKL + + + + + Sbjct: 617 LAKT---NLDTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 673 Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V +++ E NI + V + L + + D R QI + ++ NA+ F+ +G + Sbjct: 674 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVG 733 Query: 713 ARD--NGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 G+ + +++ + G IPE+ +SVF++F RR G GLGL+I ++ Sbjct: 734 FETVAGGEIMANIRIEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVD 793 Query: 767 LHGGHVSISSS-DEG-VTTIN 785 L GG++ + S EG V T+N Sbjct: 794 LFGGYIKVESQWGEGSVFTVN 814 >gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] Length = 720 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 135/242 (55%), Gaps = 13/242 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ AER L E +++ +K++F+ ++S+E+R+PL IIGF+ +L ++ Sbjct: 477 ITERKVAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILTMTED---EE 533 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ ILL L+ND+LDL+ ++AG++ L YS LN +L +K + +++ Sbjct: 534 EKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFALNGVLMTLKGVVESRLQS 593 Query: 665 NNIRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +++I + + + +++ RL Q+ L+NA F+S GS R+ + + Sbjct: 594 S---VELIFEPGMPDYYVVCSEKNRLQQLVLNFLTNACKFTSTGSIRYGYEVREK-EIYY 649 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 V + G+ IPED +F RF+ ++G GLGL I + I GG + ++S EG Sbjct: 650 YVTDTGTGIPEDKLHLIFERFIK--LDSFKQGTGLGLPICQLIIQNMGGEIGVNSKLGEG 707 Query: 781 VT 782 T Sbjct: 708 ST 709 >gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1117 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 10/246 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T ER L E EA + K+ F+ +S+E+R+P+ +IG T LL ++ Sbjct: 450 VLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTR 509 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L + +Q + E I S LL ++NDILD + ++AG + L+Y+ L L+ V + Sbjct: 510 L---SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDIL 566 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A + H I I + D +L V +D RL Q+ + NA+ F+ KG I + D Sbjct: 567 APRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGP 626 Query: 718 DFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 D F V++ G IP + +F+ F RR G GLGL+I L GG Sbjct: 627 DAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGE 686 Query: 772 VSISSS 777 V + S+ Sbjct: 687 VGVESA 692 >gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413] gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413] Length = 603 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L + +++KN F+ + S+E+R+PL++IIGFT LL + +Y+ I +S Sbjct: 223 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNIIQSSGK 282 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL L+NDILDL+ ++A +++ + + + +L V I K +++ + D + Sbjct: 283 HLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLELDPHIK 342 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 +FVAD RL Q+ +L NA+ F+++G TV LK + F+V + GS I + + Sbjct: 343 TFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQRESFIHFTVWDTGSGISPENLALL 401 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 F + + N+ Q G GLGL + +H G V + S D G Sbjct: 402 FQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVDHG 446 >gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 877 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 13/279 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSY 578 L+ ++PL + + +VTD V AE+AL ++ E L A +K+ F+ H+S+ Sbjct: 474 LKAHLVPLGPEELLGVVEDVTDLVEAEKALWKRTEELSAASADLTRTARMKDEFLAHMSH 533 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+PL ++ + L LG+LN Q + ++ I L+L+ DILDL+ V+AG + Sbjct: 534 ELRTPLGAMLNLAEALAEESLGTLNEAQRRILQSIEECGRHFLSLIGDILDLSKVEAGRL 593 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 L S + + L +++ + I + + + L D +R+ QI +LSNA Sbjct: 594 DLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLLSNA 653 Query: 699 MDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RG 753 + F+ +G V ++ RD +V + G I PED+ + +F FV R G Sbjct: 654 VKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDR-LFVPFVQGEGGLSRSFSG 712 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GLGLS+V + LHGG + + S+ + R+P E Sbjct: 713 TGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLPLAE 751 >gi|1825465|gb|AAD12184.1| utilizing regulatory protein tutC [Thauera aromatica] Length = 979 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 21/282 (7%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEAL-------RKADEIKNSF 572 V++YSI+P+ + + F+ N+TD AE L KNE L R+ DE KN F Sbjct: 125 VVDYSILPIRDCNGKVVFLLPEGRNITDKKLAEAELARKNEELQHLLEKIRQLDEAKNEF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 ++S+ELR+PL+ I+G + L G + Q ++ I ++ LL VND+LDLA Sbjct: 185 FANLSHELRTPLSLILGSVESLLADS-GDYSGVQRVDLDVIQRNAITLLKYVNDLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQI 690 + A ++L+YS + DL + A + E VI D ++ +I Sbjct: 244 LQAEKLQLHYSRV---DLAAVTRMICAHFEALAEYKCLSYVIDAPAFMEAEVDVEKYERI 300 Query: 691 FSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 +LSNA FS G + +A G + S++++G IP D +F RF Sbjct: 301 VLNLLSNAFKFSPDGGRIRCSLSATGTGRILLSIQDSGPGIPADQQSEIFGRFRQGGDIK 360 Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+IV+ F+ LHGG V +S + G +P Sbjct: 361 SRQFGGTGLGLTIVKDFVCLHGGVVVVSDAPGGGALFQIELP 402 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/363 (21%), Positives = 156/363 (42%), Gaps = 25/363 (6%) Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503 + G+ + DG I +N AF+ + E+ L I ++ R S +L + Sbjct: 620 AAGIVLTNLDGLILSANQAFQKMVGYAEDELRV-IEISDLVPEHDREKIRSRVSNLISGR 678 Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLT--FVNVTDSVRAERALTEKNE 560 + + +R+ + ++ +V S+IP L N M+ F ++T+ ++ E L E Sbjct: 679 VDDYQVQRQCRRKDGRMMWANV-RASLIPGLANQSPMVVRIFDDITEKIQTEAELARARE 737 Query: 561 ALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 L + + +++EL PL I+ + L L S+ +E + A Sbjct: 738 KLTRVMRVTAMGELAASIAHELNQPLAAIVTNGH----ASLRWLGSEPCNLLEAVEAVRR 793 Query: 619 ILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 I+ + N ++ G ++ S + + ++ +V ++ + I ++ + G Sbjct: 794 IIHD-ANRASEIIKRIRGFLQRGEGRRSAVDIFQVVADVAAIVSDMARSHCIDMRYQAVG 852 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDF-----SSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +L +AD+ +L Q+ + N ++ S +G I D SV ++G + Sbjct: 853 QLSLVIADKVQLQQVILNLCINGIESIVGGNSERGELSITVTQSDKRFLTVSVHDSGPGL 912 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINCRIP 789 ++VF+ F ++ + G+G+GL+I S I HGG + + S S EG T +P Sbjct: 913 APGEAENVFDAFYTS----KVEGLGMGLAISRSIIEAHGGRLDVLSPSTEGGCTFCFTLP 968 Query: 790 SKE 792 ++E Sbjct: 969 TEE 971 >gi|197105542|ref|YP_002130919.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478962|gb|ACG78490.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 1952 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 18/257 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL EK E L + K+ F+ ++S+ELR+PL +++ + LL + G+L+ KQ ++ Sbjct: 1247 QAKLALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNAQGNLSDKQVEF 1306 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + LL L+NDILDL+ +++G + L+ + L ++V ++ A + + Sbjct: 1307 ARNIHDAGADLLGLINDILDLSKIESGTVTLDIGEMAFAGLKDQVDRTFAQIAADKKLEF 1366 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 +V DG L S D +RL QI +LSNA F+ KG V LK AR +G Sbjct: 1367 QVELDGALPRSMYTDDKRLQQIIKNLLSNAFKFTEKGH-VKLKIARAHGGWSSTNDHLNT 1425 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FSV++ G IPED + +F F R+ G GLGLSI L GG + Sbjct: 1426 AGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLGGEL 1485 Query: 773 SISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 1486 KVESKPGKGSTFTLYLP 1502 >gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 769 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609 A + EK A +A++ K+ F+ ++S+ELR+PL IIGF++++ + G+L S++ Q Y Sbjct: 520 ARKYADEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEY 578 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S LL ++NDILD++ ++AG M+L + L + E + +A + ++ + Sbjct: 579 CHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLEL 638 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + ++ VADR+ + QI +LSNA+ F+ V ++ G + + + G Sbjct: 639 RSELNDQI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRGHVAGGSIVLMIADTGIG 697 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + + F V + G GLGL+I +S +NLHGG + + S+ T + Sbjct: 698 IPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVS 757 Query: 788 IP 789 +P Sbjct: 758 LP 759 >gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 511 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 15/244 (6%) Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612 +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ + LG LN+ Y EY Sbjct: 249 DEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNNPL--YKEYSGD 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL+L+N+ILDL+ ++AG LN +I + ++ + I + NIRI Sbjct: 307 IHRSGQHLLDLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRARAKNIRISQQ 366 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSI 730 + L AD + + Q+ +LSNA+ F+ +G +++KA G ++ S+++NG I Sbjct: 367 FEASLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYV-SIRDNGPGI 425 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787 PED V + F S A + +G GLGL IV++ + H G + S EG I Sbjct: 426 PEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAI- 484 Query: 788 IPSK 791 +P+K Sbjct: 485 LPAK 488 >gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 899 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E +D++K++F+ ++S+E+R+PL I+GF+ ++ S ++ +Y E Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + A++ LL L+N+ILDL+ +++GI++ Y + L+ L E+ + + + + ++ Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + S +D+ R+ Q+FS ++ NA F+++GS V ++ +F VK+ G I Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI ++ I GG +++SS TT +P Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 899 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E +D++K++F+ ++S+E+R+PL I+GF+ ++ S ++ +Y E Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + A++ LL L+N+ILDL+ +++GI++ Y + L+ L E+ + + + + ++ Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + S +D+ R+ Q+FS ++ NA F+++GS V ++ +F VK+ G I Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI ++ I GG +++SS TT +P Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 899 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E +D++K++F+ ++S+E+R+PL I+GF+ ++ S ++ +Y E Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + A++ LL L+N+ILDL+ +++GI++ Y + L+ L E+ + + + + ++ Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + S +D+ R+ Q+FS ++ NA F+++GS V ++ +F VK+ G I Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI ++ I GG +++SS TT +P Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] Length = 512 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYIS 614 +E+ R+A+ K+ F+ +S+ELR+PL I+GF++++K LG + ++Q + Y I Sbjct: 254 DESRRRAEAANMAKSRFLATMSHELRTPLNAILGFSEVMKDEVLGPMQNEQYKSYAADIH 313 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLNL+N+ILDL+ ++AG +L I + +++ E + + + NI + + Sbjct: 314 GSGQHLLNLINEILDLSRIEAGRHELQEEEISVTEIVEECLNMMQIRADDRNITLHNHLE 373 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPED 733 ++ AD + + Q+ +LSNA+ F+ G V + +G + SVK+NG IPED Sbjct: 374 KEMPKVWADERAVRQVVLNLLSNAVKFTPIGGDVRITVGWTSGGGQYVSVKDNGPGIPED 433 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V F S A + +G GLGLSIV++ +N+HGG ++ S Sbjct: 434 EIPVVMEAFGQGSMAIKSAEQGTGLGLSIVQALVNMHGGKFTLRS 478 >gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 892 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E +D++K++F+ ++S+E+R+PL I+GF+ ++ S ++ +Y E Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + A++ LL L+N+ILDL+ +++GI++ Y + L+ L E+ + + + + ++ Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + S +D+ R+ Q+FS ++ NA F+++GS V ++ +F VK+ G I Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI ++ I GG +++SS TT +P Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725 >gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 657 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 4/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L +A +K+ F+ ++S+ELR+PL I+G ++L G +N +Q + V +S Sbjct: 255 LMVANAELERASRLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPINQEQHEAVRSMS 314 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+NDILDL+ ++AG ++L S + + L + +A + IR+ Sbjct: 315 ESGRHLLALINDILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSIS 374 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732 ++ AD +RL QI +LSNA+ F+ G V L+ D F+V + G I E Sbjct: 375 PQVDVIYADERRLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAE 434 Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV Q G GLGL +V+ HGG V++ S + ++ R+P Sbjct: 435 ADMARLFQPFVQIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLP 493 >gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] Length = 400 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L+ + K+ ++ HVS+ELR+PL I+GF+ +L+ G+LN KQ QYV I S Sbjct: 163 NQKLQSYSDHKSDYLSHVSHELRTPLAGILGFSKMLREEIYGTLNDKQKQYVNGIRISGE 222 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL LVND LDL+ ++A +L T+ + D+ + K E N+ + + ++ Sbjct: 223 HLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVD 282 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D++++ QI +LSNA+ F+ KGS V L+ + + F V + G I E+ + + Sbjct: 283 FCKVDQRKIKQILINLLSNAIKFTEKGS-VTLEVDKIDCLLTFCVVDTGIGIKEEDQQKL 341 Query: 739 FNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F F SN R + +G GLGL++ + LH G +++ S + +P +E Sbjct: 342 FQPFQQIHSNLSR-KHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPLRE 397 >gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1195 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 3/234 (1%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +D +RA+ L L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ ++ L ++++ Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEETFKPLAGAR 585 Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++ + G +F+ D QR+ QI +LSNA+ F+ +G + A + G F V+ Sbjct: 586 HLSLAFDRLPGTPDTFITDGQRVTQILRNLLSNAVKFTERGEVALSVAPAEGGMLRFDVR 645 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++G I D +F F + Q G GLGLSI F L GG ++++S Sbjct: 646 DSGIGIAADKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699 >gi|295690558|ref|YP_003594251.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295432461|gb|ADG11633.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 574 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 V V V AER E R E + F+ ++S+ELR+PL I+GF+D+++ Sbjct: 285 LVGVLRDVTAERDRAAALEQARADAEGLAAGRARFLANMSHELRTPLNAIMGFSDIMRAR 344 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L+ + ++Y E I S LL+L+ND+LD++ ++A +L + + + Sbjct: 345 MFGPLSDRYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAIQAAMRL 404 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + ++++ V+ G+L ADR+ L QI ++SNA+ F+ +G V + + Sbjct: 405 LRVQSDSAGVQLRGVLPPGEL-EVDADRRALKQIVLNLVSNALKFTPRGGQVTVTLDGYD 463 Query: 717 GDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 G V + G I PED+ + R A ++ RG GLGLS+V +F LHGG ++ Sbjct: 464 GVLEIVVADTGVGISPEDLER--LGRPYEQAGGAEQRARGTGLGLSLVRAFAKLHGGEMA 521 Query: 774 ISSSDEGVTTINCRIP 789 I S TT++ R+P Sbjct: 522 IESRLGAGTTVSVRLP 537 >gi|227538423|ref|ZP_03968472.1| signal transduction histidine kinase [Sphingobacterium spiritivorum ATCC 33300] gi|227241705|gb|EEI91720.1| signal transduction histidine kinase [Sphingobacterium spiritivorum ATCC 33300] Length = 542 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 37/305 (12%) Query: 498 DLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 ++ A ++T+ E K L QG L+ ++Y PL T+ + V + + Sbjct: 78 EIIAIMVTAISKEDKYLIQG----LNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIK 133 Query: 557 EKN-----------------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 EKN E RK+ EI F+ ++S+E+R+P+ I+G T +L++S Sbjct: 134 EKNAELEQSKLELIRSKEEAEQARKSKEI---FLANMSHEIRTPINGIMGITQMLRSS-- 188 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +L+S+Q +V + ++S LL ++NDILD++ +D+G+MKL + +V DL +++ + Sbjct: 189 -TLSSEQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFK 247 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K N+ ++ D L ++V D RL QI S +SN + F+ KG + + +D Sbjct: 248 IKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKD 307 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 N FI FSVK+ G I + +F F A G + G GLGL+IV+ +L G Sbjct: 308 NSYFIRFSVKDTGIGIRAESLNKIFLAF-EQADDGITKKFGGTGLGLAIVKRLADLFNGS 366 Query: 772 VSISS 776 V +S Sbjct: 367 VDATS 371 >gi|77747790|ref|NP_636549.2| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761272|ref|YP_244134.2| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 292 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ L +V+D+LDLA ++AG + ++ L DL ++ N + Sbjct: 104 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDP 163 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + + FSV++ G IP ++ Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 223 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 224 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 267 >gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002] gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002] Length = 1430 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 8/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N +A + L E A+ KN F+ +S+ELR+PL ++GFT +++ S L+ Sbjct: 1079 NYYQRQQANKQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMERSP--DLS 1136 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Y+ I S LL L+NDIL+LA + G ++LN + L+DLL+++ Q A ++ Sbjct: 1137 TDHQEYLSIIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQ 1196 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI 720 NI++ + D ++ ++ AD+ +L + +L+NA+ F+ G + A++ Sbjct: 1197 HKNIQLDIHWDEQVPRYINADQAKLHSVLLHLLNNALKFTDSGCVQLTVKTLAQNPLRLR 1256 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 FSV + G I E +F+ FV G R +G GLGL++ + F+NL GG + +SS Sbjct: 1257 FSVTDTGIGIAETDFTRLFDNFV-KLEAGDRMGQGSGLGLALSQKFVNLMGGEIVVSSQ 1314 >gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426] gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 542 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ E+ + E KA++ K++ + +S+E+R+PL ++GF LL+ SL Sbjct: 145 IDITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLEMDP--SL 202 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q ++V+ I + LLNL+N++LDLA ++ G + L Y + +D++ E + + Sbjct: 203 KGRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLA 262 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++ NI I+ S ++ D R+ Q+ +L NA+ ++ G TV+++ D + Sbjct: 263 NKKNIDIQARSSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEKVVI 322 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 VK+NG IP++ +++F F + H G G+GL+ V+ I L GG + + S Sbjct: 323 HVKDNGIGIPDEEQENIFEPFYRIKGTHVD---GNGIGLAFVKQIIRLLGGTIEVKSK 377 >gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 453 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N+ L+ + K+ + HVS+ELR+PL I+GF+ +L+ G+LN KQ QYV I S Sbjct: 201 ENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTLNEKQKQYVNGIRVSG 260 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDL+ ++A +L T+ + D+ + K +E N+ + + ++ Sbjct: 261 EHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLSEQV 320 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D++++ QI +LSNA+ F+ KGS V L+ + F V + G I E+ + Sbjct: 321 DFCTVDQRKIKQILINLLSNAIKFTEKGS-VTLQVKKIESLLTFCVIDTGIGIKEEDQQK 379 Query: 738 VFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F SN +R + +G GLGL++ LH G+++++S Sbjct: 380 LFQPFQQIHSNLNR-KHKGTGLGLALSRKLAQLHQGNLTLTS 420 >gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E +A +A D++K++F+ ++S+E Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG + + + +G+ V++ G IPED VF+RF Q G GLGLS Sbjct: 422 KYTSKG-MIEMGYEKIDGNIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500 >gi|9957556|gb|AAG09417.1|AF180147_9 bZIP histidine kinase TobS [Pseudomonas putida] Length = 978 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 25/284 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ N + + ++ N+T+ +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITEKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G + + ++ G + Q+ E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689 +DA M L+Y L+ L + + + +I D KL VA D ++ + Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I +LSNA F+ G + L +R N + +V ++G IP + K +F RF + Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ RG GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 I L L+ + + N++ + V++D +L D ++ Q+ + NA++ S+ Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884 Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + D GD + SVK+ G I E +FN F + ++ G+G+GL Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +I + +H G + + G IP+++ Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974 >gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 1301 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 5/234 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ D+IK F +VS+ELR+PLT I+G + + +L + + ++ ++ ++ + Sbjct: 206 EKTRELDDIKTQFFANVSHELRTPLTLILG--PVTSRQEDPTLAPAEKRVLDMVARNARL 263 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL VND+LD+A ++AG M++ Y + L + E I + + L + Sbjct: 264 LLRHVNDLLDIAKLEAGQMRMQYVRTDVTRLCRFALSHFDSLAEERAIAFTLEAPAVLWA 323 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D ++ ++ +LSNA F+ + + D I V +NG IPE M +VF Sbjct: 324 EI-DPEKFRRVLLNLLSNAFKFTPNQGEITVSLIDRGDDVILRVSDNGPGIPESMWTAVF 382 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF RR G GLGL+IV F++LHGG VSI + EG +P K Sbjct: 383 ERFRQVDGGSDRRHGGTGLGLAIVREFVDLHGGEVSIGQASEGGAAFTVVLPKK 436 >gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 776 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 142/241 (58%), Gaps = 15/241 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ERA K EA A+E K+SF+ +S+E+R+PL I G LLK +++ SL QS YV+ Sbjct: 127 ERA---KREA-EDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEI-SLT--QSMYVD 179 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ +S +L+++NDILD + ++AG ++L ++ ++ ++ +V ++ K+ E I ++ Sbjct: 180 RITQASNNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRL 239 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDF--IFSVKNN 726 D + + F D++R+ QI IL+NA F+S G S + A++N + FSV++ Sbjct: 240 SKDPLIPNWFFGDQKRIEQILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDT 299 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTT 783 G + E+ K++F F+ RR G GLGLSIV++ + + GG + + S+ EG T Sbjct: 300 GIGMTEEQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTF 359 Query: 784 I 784 I Sbjct: 360 I 360 >gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] Length = 768 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +RA+R+L +A +AD +K+ + VS+ELR+PL I G+ ++L+ + +L Sbjct: 371 LRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHAL--- 427 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q ++ I S+ L +V DILD +++ G ++L+ + + + L ++ + T Sbjct: 428 QHQAIDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSA 487 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ S ++SNA+ F+ G +V + ARD G + +V + Sbjct: 488 GILLEFDCAASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVAD 547 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGV 781 G I + VF+ F ++ RRG+GLGLSIV LHGG+V+++S+ D G Sbjct: 548 TGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGNVTVASAGRDRG- 606 Query: 782 TTINCRIPS 790 TT +P+ Sbjct: 607 TTFTVTLPA 615 >gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 813 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 18/248 (7%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ ++E+ L A ++ F+ +S+E+R+PL IIG D+LK S L N +Q + Sbjct: 409 EQRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLKGSPL---NDEQRHNLN 465 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRI 669 I S LLNL+NDILD + ++AG M + ++ L +LLNE K +H N + + Sbjct: 466 VIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNALTL 525 Query: 670 KV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI-FSV 723 V +S+ LG D RL QI ++SNA+ F+ G T+ ++A RD N D++ F V Sbjct: 526 DVAPNVSERCLG----DPVRLRQILVNLISNAVKFTDNG-TITVRAQRDPANSDYLYFEV 580 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 +++G+ I E+ + +F+ F RR G GLGL+I + + GG + + S + Sbjct: 581 QDSGTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQG 640 Query: 782 TTINCRIP 789 + R+P Sbjct: 641 SRFWFRLP 648 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 10/259 (3%) Query: 540 LTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +T ++T+ R E++L T KNEAL KA + K+ F+ +S+E+R+P+ I+G +LLK ++ Sbjct: 725 VTTQDITELRRVEQSLITTKNEAL-KASQAKSEFLAQMSHEIRTPMNAIMGMAELLKETR 783 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ Q YV + +L++L+NDILDL+ ++AG + + + L+ +V+ + Sbjct: 784 ---LDVDQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMM 840 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD 715 + E + I I+ G + D +L Q+ ++ N++ F++KG VI K Sbjct: 841 KPRALEKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPSK 900 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + S+ + G IPED +F +F + R+ G GLGL+I +S + L GG + Sbjct: 901 KDTLLISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIW 960 Query: 774 ISSSDEGVTTINCRIPSKE 792 S TT IP +E Sbjct: 961 FKSRPGTGTTFFFTIPYRE 979 >gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 2161 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD K F+ +VS+ELR+PLT+I G+ DLL + LN +Q Y+ + +++ L+NL Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKLNEEQLSYLSVVKSNTHRLMNL 1976 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +NDIL++ +D + L + I + + EV +++ ++ + + +AD Sbjct: 1977 INDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMAD 2036 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 RL Q+ + SNA+ ++ +V L+A + + V +NG I + + +F RF Sbjct: 2037 ETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRRF 2096 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N R + G GLGLSI +S++ +HGG + + S +T + IP Sbjct: 2097 YRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIP 2145 >gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 755 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 7/247 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAE L E A K+ F+ +S+ELR+PL IIGF + + + LG + + +Y Sbjct: 501 RAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMPERYREY 560 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ISAS LL ++ DILDLA ++AG M+L+ + + +++ + + + + Sbjct: 561 AGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAG--L 618 Query: 670 KVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 +ISD L +AD +R+ Q+ +L+NA+ F+ G V + A+ +G V + Sbjct: 619 NLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDT 678 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G + E+ V FV R RR G GLGL +V + + +HGG ++I+S + T + Sbjct: 679 GIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRV 738 Query: 785 NCRIPSK 791 P + Sbjct: 739 TVTFPPR 745 >gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 509 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 143/264 (54%), Gaps = 13/264 (4%) Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593 +L+F + D + AE A + +EA R+A+E K+ F+ +S+ELR+PL I+GF+++ Sbjct: 225 ILSFQSEKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEV 284 Query: 594 LKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + +G LN+ + Y EY I S LLNL+N+ILDL+ ++AG +LN I L D+ Sbjct: 285 MSAEVMGPLNN--ATYREYTTDIHRSGQHLLNLINEILDLSRIEAGKYELNEEAISLLDV 342 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + + NI I + +L S AD + + Q+ +LSNA+ F+ +G + + Sbjct: 343 AEDCIGMVQLRARGKNISISPQFELQLPSVWADEKSIRQVILNLLSNAVKFTPQGGEITV 402 Query: 711 KAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 K +G + ++++NG IPE+ V + F S A + +G GLGL IV++ + Sbjct: 403 KVGWTSGGGQYVAIRDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAK 462 Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791 H G + S T + +P+K Sbjct: 463 HDGQFMLKSKLREGTEVIAILPAK 486 >gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 460 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 107/381 (28%), Positives = 174/381 (45%), Gaps = 49/381 (12%) Query: 415 MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 M Q+D LE + N L + + + EG+ V P G I L NPAF+ L+ Sbjct: 93 MAAKANAQLDRLEAEKNRLDAI----LRGMGEGIMVADPQGCITLVNPAFKGLF------ 142 Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLF-----AAIITSFDDERKSLQGTLELLS-DSVLE 527 G H +E +G L A+ SF D S Q +E L S E Sbjct: 143 ---GLH------------DEVEGRLLIDISRHPALHESFRDILSSRQERVEELQLHSPKE 187 Query: 528 YSI----IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 S+ +PL + V V + LR+ ++++ FV +VS+ELR+P Sbjct: 188 RSLLVHWVPLVECGVVTGVVAVFHDI----------SDLRQMEKMRRDFVANVSHELRTP 237 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T I G+ + L L ++ +++V + + + L +LV+D+L L+ +++G + L Sbjct: 238 ITIIKGYAETLLAGAL-EHPTQATKFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEAR 296 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++ + ++ V + K+ E I + + S +AD RL Q+ +L NA+ ++ Sbjct: 297 SVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTP 356 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 G +V L AA +V++ G IP +F RF V +A G GLGLSIV Sbjct: 357 AGGSVTLSAADREESVTIAVQDTGIGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIV 416 Query: 762 ESFINLHGGHVSISSSDEGVT 782 + + L GG VS SS +G T Sbjct: 417 KHIVQLQGGTVSAQSSGQGST 437 >gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1315 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 172/361 (47%), Gaps = 55/361 (15%) Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513 G I NP + +W+ TC Y+ W L + + + Sbjct: 736 GEILYINPVYEQIWQR----------------TCQSLYDNPRSW-LDSVFPEDYPSTVAA 778 Query: 514 LQGTLELLSDSVLEYSI--------------IPLPNAQTMLTFV----NVTDSVRAERAL 555 ++ L+ +D Y I P+P+ +T FV ++TD + E AL Sbjct: 779 MERQLQDSTDFDQVYRITRPNGEIRWIRARSFPVPHQKTY-RFVGIAEDITDRKQIELAL 837 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TE +A A+ K++F+ ++S+ELR+PL I+GFT L++ S + + + ++ I Sbjct: 838 TEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRS--STFPADYQENLQIIYR 895 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 SS LL L+N +LDL+ ++AG + LN + L LL +V+ K + +++ Sbjct: 896 SSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARDKGLQLLFDYSD 955 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD-----------FIF 721 ++ +V D +L Q+ +LSNA F+ +G + +K +R D G+ F Sbjct: 956 QVPQYVQTDAVKLRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGETPTANKPEEITLQF 1014 Query: 722 SVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779 +++ G+ + + +S+F+ F+ S + + G GLGLSI F+ L GG ++++S D+ Sbjct: 1015 EIEDTGAGMAAEELESIFDAFIQSKTGKQHQEGTGLGLSISRKFVQLMGGDLTVASQVDQ 1074 Query: 780 G 780 G Sbjct: 1075 G 1075 >gi|163800705|ref|ZP_02194605.1| hypothetical protein 1103602000593_AND4_00543 [Vibrio sp. AND4] gi|159175054|gb|EDP59851.1| hypothetical protein AND4_00543 [Vibrio sp. AND4] Length = 567 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++ E L ++ EA KA + FV +++ELR+PL ++G DLL + +L+ +Q Sbjct: 187 SLQREVKLRKRAEASEKATK---EFVAMINHELRTPLNGVLGSADLLDKT---ALDGEQQ 240 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY+ ++ S +L ++ND+LD + ++AG+M++ DL N + A K E I Sbjct: 241 QYLSNLTHSGDLLRVIINDLLDFSKMNAGMMEIINKVFAWKDLENALTGVFAAKAAEKRI 300 Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + D KLG + D +R+ QI ++ NA+ F++ G V+L+ NG F V+ Sbjct: 301 HFSI--DKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGG-VVLRVEWQNGYANFEVE 357 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP K++F+ FV A R +R G GLGL+I ++ ++L G +S S Sbjct: 358 DTGIGIPLGAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMEGEISFVSEPRKG 416 Query: 782 TTINCRIPSKE 792 T RIP K+ Sbjct: 417 TIFKLRIPLKQ 427 >gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 680 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627 K++F+ +S+ELR+PL IIGF+D++ G L S + + YV ++ S LL+L+ND+ Sbjct: 441 KSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRHLLDLINDV 500 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ ++AG L+ S + D + + A + ++V L +AD + L Sbjct: 501 LDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCPPCLPKLLADERAL 560 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 Q+ +LSNA+ F+ +G V + A R ++G +V++ G IP D + F Sbjct: 561 RQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTGIGIPADALARILEPFQQAD 620 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + G GLGLSI + LHGG +S+ S T R P Sbjct: 621 SSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAATIRFP 665 >gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 420 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 160/294 (54%), Gaps = 27/294 (9%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQT------------MLTFVNVTDSVRAERALTEKN 559 K+L+ +++LLS+ E ++ P + + +LT +VT+ A+R L + Sbjct: 126 KNLEASMKLLSED--EMTVTPCDVSVSGTYLNIHGKDYMVLTVYDVTELKNAQRLLAIEK 183 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E A+++K++F+ ++S+E+R+PL I+GF+ L+ ++ S ++ Y + I+ ++ Sbjct: 184 EHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSA---SGEEERKMYADIIAENNER 240 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL LVNDI DL+ +++G + Y NDLL E+ K+ NN +++I + + Sbjct: 241 LLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKL--NNSPVELICEAHVQP 298 Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735 + ++R+R++Q+ S +L NAM F++ G I R G + F V + G IPE+ Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEDQ 356 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K +F+RF+ Q G GLGL++ ++ I GG++ + S +T + +P Sbjct: 357 KKIFSRFIKLDREMQ--GTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408 >gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 633 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + + E +A+++K++F+ ++S+E+R+PL I+GF++LL S+ + + Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445 Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +EY I ++ +LL L+NDILD++ +++G+ + + + N L++EV+Q ++ + Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + F D+ RL+Q+ + ++ NA+ F+S+G I +D F V + Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + + C+ VF RFV + +G GLGLSI + I GG + + S Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613 >gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 485 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 21/245 (8%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL A K+ F+ VS+ELR+PL I+GF+ +L+ G LN+KQ QYV I S L Sbjct: 220 ALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLNTKQKQYVNDILESGKHL 279 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG-KLG 678 L+L+NDILDL+ V++G MKL ++++ +L I K ++ I I V +SD + Sbjct: 280 LDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKAFKHGIEITVDVSDEIREM 339 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFI-FSV 723 + +AD +L QI +LSNA F+ + + A DN +I V Sbjct: 340 AILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVDGGGSQDLDDNPGWIEVFV 399 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +++G I D K VF+ F VS G+ G GLGL + + + LHGG + + S EG Sbjct: 400 RDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLVELHGGRIWVES--EGR 457 Query: 782 TTINC 786 +C Sbjct: 458 HQGSC 462 >gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 493] gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493] Length = 630 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L E +D K+ F+ ++S++LR+P+ I+G + + Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +SAS+ +LL LV DILD A ++ G ++L YST L L+ + ++ + + Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I+I V D L S V++ + +IF ++ NA+ F+ KG + N + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409 Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 VK+ G IP+D ++F+RF + + + G+GLGLSI++ ++ GG V +SS Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIE 469 Query: 778 DEGVT---TINCRIPS 790 +EG T TI C I S Sbjct: 470 NEGSTFTLTIPCEIAS 485 >gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 837 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 139/275 (50%), Gaps = 23/275 (8%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRK 564 D + +G L L + L++S P+ Q+ + TF +VT+ L + Sbjct: 560 DPQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTE--------------LAE 605 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 D +K+ FV VS+ELR+PLT+I+G+ L+ G L +Q +++ ++ ++ L NL+ Sbjct: 606 LDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQEQQREFLNIVARNTNRLANLI 665 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 ND+LD+ +++G M ++ S L ++ +V ++ + + + V ++ AD Sbjct: 666 NDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLINADP 725 Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL QI + ++SNA+ ++ +G TV + A D + V + G I K +F +F Sbjct: 726 DRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVE--LEVADTGIGISPADQKRIFEKFY 783 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 H R G GLGL IV++ + HGG + + S Sbjct: 784 RAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLES 818 >gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 646 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +TE+N A +AD++K++F+ +S+ELR+PL +IIGFT ++ G LN +Q + + + Sbjct: 406 ITERNRA-EEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPLNKEQEKQLGMVQ 464 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL L+ND+LD++ ++AG + ++ + + + V ++ + + + V Sbjct: 465 DSARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKSAEDKGLSLHVDIS 524 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G + D++R+ QI +++NA+ F+ +G + + R+ + SV + G I E+ Sbjct: 525 PDTGFIIGDQRRIEQILINLINNAIKFTERGYVCVKSSLREK-NVCISVSDTGIGISEEE 583 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 K +F F + + G GLGLSI + + LHGG + ++S + +P+ E Sbjct: 584 MKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEPGKGSEFTVILPAGE 643 >gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 553 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 9/249 (3%) Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607 E A +EA R+A+ + K+ F+ +S+ELR+PL I+GF+++++ LG + S Sbjct: 259 EEASAISDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGSDTYR 318 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL ++N+ILDL+ ++AG L+ T+ L D+ + ++ I K + Sbjct: 319 EYAHNIYESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKADAKTL 378 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKN 725 I L AD + + QI +LSNA+ F+ +G +++ D G F+ ++ + Sbjct: 379 HIVEDFAPDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFV-TISD 437 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP+D V F S AH+ G GLGL IV++ I+LHGG + S T Sbjct: 438 TGPGIPKDEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRKGTE 497 Query: 784 INCRIPSKE 792 + +P + Sbjct: 498 VTVTLPRQR 506 >gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya zeae Ech1591] gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591] Length = 955 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 6/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++V+ VR E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 444 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 500 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL S ++ V + SS +LL +++DILD + +++ +K+ S +++N + + Sbjct: 501 SLPSDANRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLP 560 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D + S + D RL Q+ S +LSNA+ F+ G V A D G Sbjct: 561 LVVKKRLELYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACSDEGYL 620 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 +F V++ G I +F+ F QR +G GLGL+I E ++L G ++I S Sbjct: 621 VFKVRDTGVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESE 680 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 681 PGLGSEFGIRIP 692 >gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 1209 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/411 (24%), Positives = 186/411 (45%), Gaps = 48/411 (11%) Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQ--VDLETKYN-TLVKVQGETIDHLS 444 P+G+ + + S P G ++ F ++T + + E ++ TL++ Q E Sbjct: 549 PSGELTWLSINSQPLCDEQGNVYAAVASFHDITARRLAEQELRFQKTLLECQTEAS---P 605 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 +GV V P+ R SN FR +W + + ++ TC +++ Sbjct: 606 DGVLVVSPERRCLYSNRRFREMWNLSDR------EVDHVMCTC------------MESLL 647 Query: 505 TSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE--------RAL 555 D + EL ++ L + I L + +T + S E R + Sbjct: 648 AQVCDPERVRNEIEELYANPSLSGKAEIELKDGRTFERYSAPVISAEGEYYGRVWFFRDV 707 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TE+ R + +KN FV VS+ELR+PLT+I G LL +G L + + ++ Sbjct: 708 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGELPPRAASMIDIALK 763 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S L+ L+NDILD+ +++G M + +VL++L+ + ++ + ++ I++ + Sbjct: 764 NSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATL 823 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734 D R+ Q+ + ++SNA+ FS G V + R+ G +V ++G IP + Sbjct: 824 PGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEF 883 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F +F RR G GLGLSI + + HGG + +++S G T Sbjct: 884 RDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTT 934 >gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 738 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D RAE+AL E A K+ F+ ++S+E+RSP+ I+G L++ ++L Sbjct: 236 DISDRKRAEQALATAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLMEYTEL---T 292 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y+ I +SS LL+L+N+ILDL+ ++AG ++L S L ++++ ++ +++H Sbjct: 293 DEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIH 352 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I+ I + + D+ RL QI +L NA+ F+ +G I A + D Sbjct: 353 DKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVR 412 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G IP D + +F F R+ G GLGLSI L G +++ S Sbjct: 413 LRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVES 472 Query: 777 SDEGVTTINCRIP 789 + +T + +P Sbjct: 473 REGSGSTFSVHLP 485 >gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101] gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101] Length = 529 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 16/260 (6%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 PN + ++ ++TD + ER ++AD FV VS+ELRSPLT+I G L Sbjct: 267 PNGRFLIMLNDITDRMAEER---------KQAD-----FVSMVSHELRSPLTSIKGAMGL 312 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + G L+ + +E ++ L+ ++NDILD+ + +G + + ++++++E Sbjct: 313 LLSRAAGELSPQAVGLLEIAHRNADRLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHE 372 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +S A + + I+ I D R++Q+ ++SNA FS G+T+ + Sbjct: 373 ALRSNAATQQRSGVNIRCIGLDVPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVE 432 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R SV++ G+ IPE +F RF ++N+ RG + G GLGLSI ++ + GG Sbjct: 433 RLASGVRVSVRDEGTGIPEKDHHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGT 492 Query: 772 VSISSSDEGVTTINCRIPSK 791 +S S + TT +P+K Sbjct: 493 ISFESREGEGTTFMFTLPTK 512 >gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] Length = 630 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L E +D K+ F+ ++S++LR+P+ I+G + + Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +SAS+ +LL LV DILD A ++ G ++L YST L L+ + ++ + + Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I+I V D L S V++ + +IF ++ NA+ F+ KG + N + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409 Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 VK+ G IP+D ++F+RF + + + G+GLGLSI++ ++ GG V +SS Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIE 469 Query: 778 DEGVT---TINCRIPS 790 +EG T TI C I S Sbjct: 470 NEGSTFTLTIPCEIAS 485 >gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 804 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 16/251 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + E KA ++K++F+ ++S+E+R+P+ ++G LL T+KL N +Q +YVE Sbjct: 402 EWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL---NDEQKEYVE 458 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S S+ LL ++NDILD + ++AG + L + +L+E+ + + I ++ Sbjct: 459 VLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL 518 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725 ++ +V D RL QI + N + F+S+G V+LK + N F+V + Sbjct: 519 EGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGE-VVLKVTQKNISKSSVSIEFTVMD 577 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG-- 780 +G IP + K VF F N R+ G GLGLSI + + L GG + + S D EG Sbjct: 578 SGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSK 637 Query: 781 -VTTINCRIPS 790 TI+ IPS Sbjct: 638 FTFTIDYDIPS 648 >gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 633 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + + E +A+++K++F+ ++S+E+R+PL I+GF++LL S+ + + Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445 Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +EY I ++ +LL L+NDILD++ +++G+ + + + N L++EV+Q ++ + Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + F D+ RL+Q+ + ++ NA+ F+S+G I +D F V + Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + + C+ VF RFV + +G GLGLSI + I GG + + S Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613 >gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 957 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D++K+ FV VS+ELR+PL +++GFT+L+ L +Q +Y+ I + L +L Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLKE--ERQKKYLTTIYQEAQRLTSL 638 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVA 682 +ND LD+ ++AG K Y D+L +KQ I K+ + +ISD + + + Sbjct: 639 INDFLDVQRMEAG--KQTYDK-KYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVMG 695 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ +LLQ+F+ ++SNA+ +S G V +K + +++ G IP + +F +F Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPSEALGQLFTKF 755 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N+ + G GLGL+IV+ + HGG +++ S + TT +P Sbjct: 756 YRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804 >gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] Length = 927 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 135/241 (56%), Gaps = 14/241 (5%) Query: 546 TDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +DSVR +RA+ E EA + + K+ F+ +S+E+R+P+ I+G TDLL+ + S+ Sbjct: 405 SDSVR-DRAIAEM-EAFKAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRT---SMT 459 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+QYV I S+ LL ++NDILD + +++G ++L+Y I L +++++ + A + Sbjct: 460 HQQAQYVGTIYQSTQSLLTVINDILDYSKIESGKLELDYQPIALENIVDDCVRLFALRSS 519 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD- 718 E ++ + + D ++ + D RL QI + +LSNA F+ +G + LK +N Sbjct: 520 EKSLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAFKFTDRGHVALHVNLKQPVNNKGM 579 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G + E S+F F + +G+ G GLGL I + I L GG + +SS Sbjct: 580 CVLMIEVVDTGIGLDEGQQSSLFQAFSDLSAKGKHNGAGLGLVICKRLIELLGGDIGVSS 639 Query: 777 S 777 S Sbjct: 640 S 640 >gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1209 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/411 (24%), Positives = 186/411 (45%), Gaps = 48/411 (11%) Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQ--VDLETKYN-TLVKVQGETIDHLS 444 P+G+ + + S P G ++ F ++T + + E ++ TL++ Q E Sbjct: 549 PSGELTWLSINSQPLCDEQGNVYAAVASFHDITARRLAEQELRFQKTLLECQTEAS---P 605 Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 +GV V P+ R SN FR +W + + ++ TC +++ Sbjct: 606 DGVLVVSPERRCLYSNRRFREMWNLSDR------EVDHVMCTC------------MESLL 647 Query: 505 TSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE--------RAL 555 D + EL ++ L + I L + +T + S E R + Sbjct: 648 AQVCDPERVRNEIEELYANPSLSGKAEIELKDGRTFERYSAPVISAEGEYYGRVWFFRDV 707 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TE+ R + +KN FV VS+ELR+PLT+I G LL +G L + + ++ Sbjct: 708 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGELPPRAASMIDIALK 763 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S L+ L+NDILD+ +++G M + +VL++L+ + ++ + ++ I++ + Sbjct: 764 NSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATL 823 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734 D R+ Q+ + ++SNA+ FS G V + R+ G +V ++G IP + Sbjct: 824 PGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEF 883 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F +F RR G GLGLSI + + HGG + +++S G T Sbjct: 884 RDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTT 934 >gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] Length = 630 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L E +D K+ F+ ++S++LR+P+ I+G + + Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +SAS+ +LL LV DILD A ++ G ++L YST L L+ + ++ + + Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I+I + D L S V++ + +IF ++ NA+ F+ KG + N + Sbjct: 350 QKQIKINIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409 Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 VK+ G IP+D ++F+RF + + + G+GLGLSI++ ++ GG V +SS Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 469 Query: 778 DEGVT---TINCRIPS 790 +EG T TI C I S Sbjct: 470 NEGSTFTLTIPCEIAS 485 >gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 456 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 2/234 (0%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L + +++KN F+ +++LR+PL + G+ DLL+ LG LN Q + + ++ + Sbjct: 212 ERLMELNDLKNRFLGVAAHDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVAER 271 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+LD++ +++G ++L + LN L + +IRI + L + Sbjct: 272 MSALVEDLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPT 331 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D +RL Q+ +++NA+ FS + ST+ L D+ SV + G IP + +F Sbjct: 332 VAVDSRRLGQVLDNLIANAVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQLF 391 Query: 740 NRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F SNA + GLGLSIV+ + HGG V++ ++ G +P + Sbjct: 392 QPFRRGSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPRQ 445 >gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 389 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 10/245 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++++ E LT E +A+ +K++ + ++++E+R+PL I+GF LL Sbjct: 139 SLMSISKRKALEEELTAAKERAEEANRLKSALIANMNHEIRTPLNAIVGFASLLSIV--- 195 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I +++ LL L+ND++DL+ +++G+M + S ++L+ L+ E++Q Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRP 255 Query: 661 KMHENNIRIKVISDG-KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K N+ + DG +LG+ + DR RL+QI +L NA+ F+ KG+ + ++ G Sbjct: 256 KAESRNLVLA--WDGEQLGAHIYTDRGRLIQILEHLLCNAIKFTLKGTVRLGYRKKEEGR 313 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSS 777 F V + G IPE+ + +F RFV Q G+GLGL + + ++ LHG S Sbjct: 314 IWFYVTDTGCGIPEEKKELIFERFVKLDDFVQ--GLGLGLPLCKIIVDRLHGTIGVDSKV 371 Query: 778 DEGVT 782 EG T Sbjct: 372 GEGST 376 >gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 633 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + + E +A+++K++F+ ++S+E+R+PL I+GF++LL S+ + + Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445 Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +EY I ++ +LL L+NDILD++ +++G+ + + + N L++EV+Q ++ + Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + F D+ RL+Q+ + ++ NA+ F+S+G I +D F V + Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + + C+ VF RFV + +G GLGLSI + I GG + + S Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613 >gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] Length = 600 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ ++S+ELR+PL I+GF+D+++ G L+ + ++Y E I S LL+L+ND+L Sbjct: 332 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 391 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D++ ++A +L + + + + + ++++ V+ G+L ADR+ L Sbjct: 392 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 450 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI ++SNA+ F+ +G V + A +G V + G I PED+ + R A Sbjct: 451 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 508 Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ RG GLGLS+V +F LHGG + I S TT++ R+P Sbjct: 509 GGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 553 >gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM 17393] Length = 870 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 7/239 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + +++AL +AD +K++F+ ++S+E+R+PL +I+GF+DLLK S + Q+V+ Sbjct: 634 EELIAARDKAL-QADTLKSAFLANMSHEIRTPLNSIVGFSDLLKDIDAFS-PEEVKQFVD 691 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ + T+LL L+NDILDL+ +++G M ++ L ++ ++ S M + +K Sbjct: 692 TINTNCTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDSQRLSMPPGVELVMK 751 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + + K S V D RL Q+ + ++NA F+++GS D G +F V++ GS I Sbjct: 752 LPEESK--SIVTDSIRLKQVINNFINNAKKFTTQGSITFGFQTEDPGYTVFFVEDTGSGI 809 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ + +F RF Q G GLGLSI ++ + G +++SS T R+P Sbjct: 810 SEENQRRIFERFYKVDSFTQ--GAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 866 >gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1158 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 3/240 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E L +A + K+ F+ ++S+ELR+PL + + LL ++ G+L+ +Q ++ + I Sbjct: 475 LRERAEDLERASQYKSEFLANMSHELRTPLNSSLILAKLLADNREGNLSEEQVKFAQTIY 534 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 ++ LLNL+NDILD++ V+AG ++L + + L N ++ + + + IS Sbjct: 535 SAGNDLLNLINDILDISKVEAGKLELKPQELAVQHLANSLQAVFEPLAQQKKLDFSIDIS 594 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + DRQRL QI +LSNA+ F+ KGS + + + F+VK++G I Sbjct: 595 PQTPDTIYTDRQRLEQILKNLLSNAIKFTDKGSISLHISNNAHDQISFTVKDSGIGIDPS 654 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 M +++F F RR G GLGLSI + L GG +++ S+ ++ +P + Sbjct: 655 MHEAIFAPFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSINVESARGEGSSFTLLVPRQ 714 >gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 822 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 16/251 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + E KA ++K++F+ ++S+E+R+P+ ++G LL T+KL N +Q +YVE Sbjct: 420 EWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL---NDEQKEYVE 476 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S S+ LL ++NDILD + ++AG + L + +L+E+ + + I ++ Sbjct: 477 VLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL 536 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725 ++ +V D RL QI + N + F+S+G V+LK + N F+V + Sbjct: 537 EGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGE-VVLKVTQKNISKSSVSIEFTVMD 595 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG-- 780 +G IP + K VF F N R+ G GLGLSI + + L GG + + S D EG Sbjct: 596 SGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSK 655 Query: 781 -VTTINCRIPS 790 TI+ IPS Sbjct: 656 FTFTIDYDIPS 666 >gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 420 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/336 (27%), Positives = 177/336 (52%), Gaps = 30/336 (8%) Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529 R+ H RN IAA + + + A+I +F + K+L+ +++LLS+ E + Sbjct: 84 RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMT 141 Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + P + + +LT +VT+ +R LT + E A+++K++F+ ++S Sbjct: 142 VTPCDVSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMS 201 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL I+GF+ L+ ++ S ++ Y + ++ ++ LL LVNDI DL+ +++G Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SGEEERKMYADILAENNERLLRLVNDIFDLSQIESGT 258 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695 + Y NDLL E+ K+ NN +++I + + + ++R+R++Q+ S +L Sbjct: 259 VDFVYKEFDANDLLRELDGIFKAKL--NNSPVELICEAHVQPIMMYSERERIIQVLSNLL 316 Query: 696 SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 NAM F++ G I R G + F V + G IPE+ K +F+RF+ Q G Sbjct: 317 HNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEDQKKIFSRFIKLDREMQ--G 372 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL++ ++ I GG++ + S +T + +P Sbjct: 373 TGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408 >gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM 17393] Length = 712 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 6/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E ++D +K++F+ ++S+E+R+PL I+GF+ LL + + Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEAD----D 380 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y+ + ++ +LLNL++DILD++ ++AG ++L + + L L EV + + K H Sbjct: 381 DERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTCSHKKH 440 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E + + AD+ R++Q+ S ++NA+ F++KGS + ++ F V Sbjct: 441 EEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTKGSVTLSYRLENDTQVRFCV 500 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP + +FNRFV Q G GLGLSI +S + GG + + S + Sbjct: 501 TDTGKGIPAEQQHEIFNRFVKLDSFSQ--GAGLGLSICQSLVERMGGEIGVESRE 553 >gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 976 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + ++AL + EA A+ K+ ++ +S+ELR+PL +I+GFT +L+ Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + I SS+ LL+L+N +LD+A ++AG +KL + I+ + L+++++ Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A+ E N+ ++ +G++ V D +R+ QI +L NA++F+ G V+L+ + Sbjct: 768 MFASTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 IF + + G I + + +F F GVGLGL+I L GG +S+S Sbjct: 827 RETAIFDIVDTGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886 Query: 776 SSDEGVTTINCRI 788 S+ T R+ Sbjct: 887 STPGEGTHFKVRL 899 >gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 421 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 137/254 (53%), Gaps = 5/254 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F ++T+ AE+ L + + L++ D +K+ F +S+E+R+P+T+I G+T+LL +G Sbjct: 170 AFQDITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMG 229 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN+ Q + I + L LV+D+LD++ ++ LN + + D+L V +A Sbjct: 230 KLNNNQKMCLNTILENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAP 289 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + +I++ + + + AD+ RL Q+F+ I NA+ FS + V + N D Sbjct: 290 IALKKHIKLSL--EIPNITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDI 347 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + S+K+NG I ++ + +F+RF + +++R ++ G GLGL I + I H G + + S Sbjct: 348 LISIKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESE 407 Query: 778 DEGVTTINCRIPSK 791 +T +P K Sbjct: 408 LNQGSTFYISLPKK 421 >gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 899 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 12/265 (4%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEI 568 E + Q L L D VL S P+ + T + V V + AE A+ D+ Sbjct: 609 ENGATQRDLYRLGDRVLRLSHAPVTTDEGTQIGEVVVLHDISAEVAV----------DQA 658 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+ELRSPLT I G+TDLL +G L+ +Q +E + ++ N+V +++ Sbjct: 659 KTDFIATISHELRSPLTVIYGYTDLLLRGMVGELSGEQRDLLEAVRNRVELMNNIVRNVI 718 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 +A+++A ++ +++ + +++E + + + + V + L ADR++LL Sbjct: 719 MVASIEANTLQTDFAAQDVRRMIDEAVAPMRKSFEKKGLALTVTTPDDLPPVRADREQLL 778 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747 I +++ NA ++ +G I RDNG V + G IP D +F RF + Sbjct: 779 IILGQVIDNARRYTQQGEVTITAHQRDNGMVQIDVSDTGPGIPADAMNRLFTRFFRVEGN 838 Query: 748 RGQRRGVGLGLSIVESFINLHGGHV 772 RG GLGL I + HGG V Sbjct: 839 NSPERGSGLGLVITRQLVERHGGKV 863 >gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1391 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 129/241 (53%), Gaps = 9/241 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L+E + AD K+ F+ ++S+E+R+P+ ++G +LL S +L+ Sbjct: 815 DITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLD 871 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + + I S LL ++NDILD + +DAG M L+ + L + + +V ++T+ Sbjct: 872 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAK 931 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719 E ++ + V + +L S FV D R+ QI + +L NA+ F+ +G ++ + R Sbjct: 932 EKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRL 991 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G IPE+ K VF +F RR G GLGL+I + L GG + + S+ Sbjct: 992 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESA 1051 Query: 778 D 778 + Sbjct: 1052 E 1052 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D + GV V D R ++ N AF W+ + R G+ R + SR + G D Sbjct: 316 VDEMPIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELM-EASRAIDPY-GADE 373 Query: 500 FAAIITSFDDE---RKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTD 547 A + + E R + G+ +L + L S+ PLP + ++++V+VTD Sbjct: 374 LAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTD 426 >gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 595 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 171/353 (48%), Gaps = 32/353 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ + I A NE L Sbjct: 265 MADGVITFNRDGEILITNPPAERFLQAWYFEQGNDA------EIIAPLPPQVNE-----L 313 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ +++ +S++ +L+ + +L + PL + NV +V R +TE+ Sbjct: 314 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDK------TNVRGAVAVLRDMTEE- 361 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P+ + G+++ + + + + ++ + + I S Sbjct: 362 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 417 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA ++AG + LNY T+ L + + + E I + D + Sbjct: 418 MGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIR 477 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ + + TV + A ++ G V+++G+ IPE+ VF Sbjct: 478 IRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVF 537 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A R G GLGL+I ++ + H G +S+ S TT +P+ Sbjct: 538 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLPN 590 >gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 815 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 12/250 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 VT+ + A R ++ E D +K+ FV +VS+EL++PLT I G+++LL L Sbjct: 447 VTNFILALRDISLAKEL----DRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP--E 500 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + Y + I S L LVND+L+++ +++G ++L + + ++ E T+ + Sbjct: 501 RVRNYYQIIYKESERLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSK 560 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + I V+ + +FV D RL Q+F +L NA+ +S G V ++ A D + V Sbjct: 561 HTI---VLQFPEYPTFVLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMEDILIEV 617 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G IP + +F+RF V ++ R G GLGLSIV+S + HGG +S +S Sbjct: 618 QDQGVGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEG 677 Query: 782 TTINCRIPSK 791 TT R+P + Sbjct: 678 TTFTIRLPRR 687 >gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1054 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A++ L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 326 QTNVQLEERTQALEAQKQALLVAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+ +Q +Y + I +S+ LL L+NDILDL+ ++AG ++L TI + Sbjct: 386 ILAKLLADNKDGTLSPEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETIATS 445 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++++ + + +++ +D + V D QRL QI +L+NA+ F+ GS Sbjct: 446 SVLQRLRETFEPLARQKGLALQITADADAPTQLVMDSQRLQQILKNLLANAIKFTEHGSV 505 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A+ G +F V++ G I + + +F F +RR G GLGLSI Sbjct: 506 SLSLQAQAPGRVLFKVQDTGIGIAREQTEIIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG + + S + +P+ Sbjct: 566 QRMGGSIRVDSEPGRGSCFTLELPT 590 >gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus DSM 14838] Length = 709 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 131/235 (55%), Gaps = 6/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L E ++D +K++F+ ++S+E+R+PL I+GF+ LL + + Sbjct: 325 DITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEAD----D 380 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y+ + ++ +LLNL++DILD++ ++AG ++L + + + L EV + + K H Sbjct: 381 DERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTCSHKKH 440 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E + ++ AD+ R++Q+ S ++NA+ F++KGS + D+G F V Sbjct: 441 EEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTKGSVTLSYRLEDDGLLHFCV 500 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G IP + +F+RFV Q G GLGLSI +S + GG + ++S + Sbjct: 501 TDTGKGIPAEQQHEIFSRFVKLDSFSQ--GAGLGLSICQSLVERMGGQIGVNSRE 553 >gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15] gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15] Length = 597 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ ++S+ELR+PL I+GF+D+++ G L+ + ++Y E I S LL+L+ND+L Sbjct: 329 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 388 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D++ ++A +L + + + + + ++++ V+ G+L ADR+ L Sbjct: 389 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 447 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI ++SNA+ F+ +G V + A +G V + G I PED+ + R A Sbjct: 448 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 505 Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ RG GLGLS+V +F LHGG + I S TT++ R+P Sbjct: 506 GGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 550 >gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519] gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii] Length = 965 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 137/241 (56%), Gaps = 11/241 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ++ L + + +A+E K+ F+ +S+E+R+PL I G LLK + ++ QS YV+ Sbjct: 307 QKDLKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKT---DISLTQSMYVD 363 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ +S +L+++NDILD + ++AG +++ ++ ++D++ V ++ K+ E I ++ Sbjct: 364 RITQASNNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEIGFRL 423 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNN 726 D +L + F+ D +R+ Q+ IL+NA F+ KG ++ D F++K+ Sbjct: 424 SKDSQLPNWFIGDPKRIEQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFNIKDT 483 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTT 783 G + + + +F+ FV RR G GLGLSIV++ + + GG +++ S+ DEG T Sbjct: 484 GIGMTQQQVEKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDEGSTF 543 Query: 784 I 784 I Sbjct: 544 I 544 >gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum] gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum] Length = 1400 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 23/284 (8%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573 +++S++PL N + ++ + N+T+ E + KN LR + DE+K F Sbjct: 159 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGEIEIERKNNELRSLYEKIKELDELKTQFF 218 Query: 574 QHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 +VS+ELR+PL I+G TD LLK L S N ++ ++ ++ +S LL +VN++LD++ Sbjct: 219 ANVSHELRTPLALIVGPTDKLLKEENL-SENVRKD--LDIVARNSRSLLKIVNNLLDISR 275 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 ++AG M LNYS + L+ ++ + E ++ +I+ D ++ ++ + Sbjct: 276 LEAGKMNLNYSMVNLSQTVHLIASCFEILAREKSLDFSIITPSIPLMAAIDADKMQRVIT 335 Query: 693 KILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 +LSNA F+ G +V IL+ + F V + G IPE + + +F RF V Sbjct: 336 NLLSNAFKFTPSGGSVKCILEKFDISPTVPGFQIIVSDTGPGIPEKLHEIIFERFRQVDG 395 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + G GLGLSIV+ F+ LHGG VSI + + RIP Sbjct: 396 TNTRKHGGTGLGLSIVKEFVTLHGGTVSIHNGSKCGAQFTLRIP 439 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 31/256 (12%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ L ++ K+ F ++S+ELR+PL I+G+ LL S +S ++ I Sbjct: 734 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDLDSSDDSTIRTGLQTIE 793 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMH---ENNIR 668 ++ L+ND+LD++ + L + L L+ SI A H + NI Sbjct: 794 RCASSQNQLINDLLDMSLIIGDKFSLIMGEVDLPLLIQNAIASILVSAQSKHITIDTNIE 853 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------- 713 L + D+ RL Q+ +LSN++ F+++ + + A Sbjct: 854 EPPQDPQVLQNLRGDKSRLQQVIWNLLSNSIKFTNENGKIEIHAKVLNQIPINELGFCSN 913 Query: 714 ------RDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 + GD + ++ +NG IP +VF+RF R G+G+GLSI ++ Sbjct: 914 PMFNPIQRQGDRWILLTISDNGKGIPHQFLPNVFDRFKQADCSSTRSYGGLGIGLSITQN 973 Query: 764 FINLHGGHVSISSSDE 779 I+LH G V +S E Sbjct: 974 IIHLHKGAVFANSQGE 989 >gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8] gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter aquaeolei VT8] Length = 922 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 32/279 (11%) Query: 543 VNVTDSVRAERALTEKNEALRKAD--------------EIKNSFVQHVSYELRSPLTNII 588 + V + +R+E AL + LR A K+ F+ ++S+E+R+P+ +I Sbjct: 540 LEVDERIRSENALRRSEDELRAAKLEAERLAREAEAASRAKSEFLANMSHEIRTPMNAVI 599 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G++DLL S + +Q Y+ I A S LL L+NDILDL+ ++AG M+L++ + + Sbjct: 600 GYSDLLYNS---VTDPQQRNYLNAIRAGSRSLLMLINDILDLSRIEAGKMRLDFGPVSVR 656 Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 LL++V+ + E I ++V + G + + D RL Q+ ++ NA+ F+ +G Sbjct: 657 RLLSDVRHIFDLRATEQGITLEVSVGSGMPSAMMLDETRLRQVLFNLVGNAIKFTHEGGV 716 Query: 708 VILKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 + A+ G+ + +V + G I D + +F F + RR G Sbjct: 717 TVRAVAKPLGEPADADSEVCYYRLVVTVADTGIGIAPDQQERIFEAFEQQEGQSSRRYGG 776 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GLGL+I + + GG +++ S +T +P E Sbjct: 777 TGLGLAISRKLVEMMGGRLTVKSEANVGSTFKVVLPRVE 815 >gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 554 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 5/244 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L E N LR + K+ F+ +S+ELR+PLT+II FT+LL + + + K+++ Sbjct: 305 RQRAQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELLNRNSEPA-DEKEAET 363 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I A+S LL ++NDIL+++ +DAG +++N T+ L D+ V+ + + I Sbjct: 364 RREIEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAF 423 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727 D + AD ++L + + NA+ F+ +G V L + + G V + G Sbjct: 424 ACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTG 483 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I + + +F+RFV RR G GLGLS+ + + +HGG +S+ S + Sbjct: 484 IGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFT 543 Query: 786 CRIP 789 RIP Sbjct: 544 VRIP 547 >gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 595 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 171/353 (48%), Gaps = 32/353 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ + I A NE L Sbjct: 265 MADGVITFNRDGEILITNPPAERFLQAWYFEQGNDA------EIIAPLPPQVNE-----L 313 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ +++ +S++ +L+ + +L + PL + NV +V R +TE+ Sbjct: 314 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDK------TNVRGAVAVLRDMTEE- 361 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P+ + G+++ + + + + ++ + + I S Sbjct: 362 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 417 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA ++AG + LNY T+ L + + + E I + D + Sbjct: 418 MGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIR 477 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ + + TV + A ++ G V+++G+ IPE+ VF Sbjct: 478 IRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVF 537 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A R G GLGL+I ++ + H G +S+ S TT +P+ Sbjct: 538 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLPN 590 >gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1105 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 140/255 (54%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + E+ L ++ E L++A++ K+ F+ +S+ELRSPL I+G++ LLK+ K Sbjct: 706 LDLTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRSPLNPILGWSSLLKSRKFDEA 765 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +E I ++ + + L++++LD++ + G + L ++T+ L +++ +++ Sbjct: 766 TTNRA--LETIERNTQLQIKLIDELLDVSRIIRGKLNLTFATVNLASVIDAALETVRLIA 823 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--- 719 +I+IK+ D +G D RL Q+ +LSNA+ F+ +V + + +G+ Sbjct: 824 ESKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKFTPPNGSVEVSLS-SSGELASH 882 Query: 720 --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + VK+ G I + VF F R+ G+GLGL+IV + + LHGG V+ + Sbjct: 883 SALIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLGLGLAIVRNLVELHGGTVTAA 942 Query: 776 SSDEGVTTI-NCRIP 789 S EG I R+P Sbjct: 943 SPGEGQGAIFTVRLP 957 >gi|213969639|ref|ZP_03397775.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213925735|gb|EEB59294.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1161 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + ++AL + EA A+ K+ ++ +S+ELR+PL +I+GFT +L+ Sbjct: 688 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 747 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + I SS+ LL+L+N +LD+A ++AG +KL + I+ + L+++++ Sbjct: 748 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 805 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A E N+ ++ +G++ V D +R+ QI +L NA++F+ G V+L+ + Sbjct: 806 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 864 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 IF + ++G I + + +F F GVGLGL+I L GG +S+S Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 924 Query: 776 SSDEGVTTINCRI 788 S+ T R+ Sbjct: 925 STPGEGTHFKVRL 937 >gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1516 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 9/247 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+AL ++ E +++K F+ VS+E R+PLT+I+G+ +LL+ K++ Y Sbjct: 1269 KIEKALIKEKEL----NQLKTQFIDVVSHEFRTPLTSILGYAELLERHSDKLSEQKKNNY 1324 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665 + I + L +L+ D+L ++ ++G ++LN + L DL+ E++ I K HE Sbjct: 1325 LHKIRIAGQRLSDLIEDVLCISRAESGKLQLNPHPLNLEVFCQDLIEEIQIGIG-KNHEM 1383 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + S L + D + L I S +LSNA+ +SS GS V L N IF + + Sbjct: 1384 IFTRQPDSFNSLNGILLDEKLLRHILSNLLSNALKYSSLGSRVELSLYYKNEQVIFEISD 1443 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G IP + +F+ F ++ G G GLGL IV ++ LHGG + SS TT Sbjct: 1444 QGIGIPAEAHPKLFDSFYRASNVGNIPGTGLGLHIVYKYVTLHGGTIDFSSKISVGTTFR 1503 Query: 786 CRIPSKE 792 +IP E Sbjct: 1504 VKIPISE 1510 >gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1142 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E AL +K L +A K+ F+ ++S+ELR+PL + + LL +K +L ++Q +Y + Sbjct: 471 EVALRQKATELERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNLTAEQVKYAQ 530 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+++ LL L++DILDL+ ++AG + L I + L N +++ E + +++ Sbjct: 531 SITSAGNDLLALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELRI 590 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D + + AD QRL QI S +LSNA+ F+ G + D F+V++ G I Sbjct: 591 IVDPRCPETIEADGQRLHQILSNLLSNAVKFTEAGRVRLTVEPHDERRLAFTVQDTGIGI 650 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 D + +F F R+ G GLGLSI F L GG + + S+ Sbjct: 651 AADQHEVIFQAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSA 699 >gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 810 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 144/268 (53%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL ++ S N +Q +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLL--AETDSRNERQ-EYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ E+ +S++ K+ + +++I + D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPFPECYIYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +GS + + F V++ G IPE+ KSVF RFV Q G Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EG+ Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796 >gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] Length = 1410 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 14/250 (5%) Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VTD + AER AL +A+ K+ F+ +S+++R+P+ IIG T L Sbjct: 994 LVQADVTDMLAAERKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAIIGMT-TLA 1052 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + LG + + + + IS SS LL+L+NDILD++ +++ + LN I L D+L ++ Sbjct: 1053 VAHLGD-SGRVADCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLPDMLEKLS 1111 Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712 IA + E IR + ++G + F D R+ QI ILSNA+ ++ +G +V+ A Sbjct: 1112 AIIAPQAGEAGIRFDIRTEGIRHNYFYGDALRIDQILINILSNAVKYTREGGSVMFAAEE 1171 Query: 713 ---ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 R G + F+V + G + E+ + +F+ F +A + G GLGLSI + ++L Sbjct: 1172 IPSVRQAGWLRYRFTVSDTGIGMTEEFLEHIFDPFARSAGTQRIEGTGLGLSITKGLVDL 1231 Query: 768 HGGHVSISSS 777 GG +S+ S+ Sbjct: 1232 MGGEISVQST 1241 >gi|28871222|ref|NP_793841.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854472|gb|AAO57536.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1161 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + ++AL + EA A+ K+ ++ +S+ELR+PL +I+GFT +L+ Sbjct: 688 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 747 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + I SS+ LL+L+N +LD+A ++AG +KL + I+ + L+++++ Sbjct: 748 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 805 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A E N+ ++ +G++ V D +R+ QI +L NA++F+ G V+L+ + Sbjct: 806 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 864 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 IF + ++G I + + +F F GVGLGL+I L GG +S+S Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 924 Query: 776 SSDEGVTTINCRI 788 S+ T R+ Sbjct: 925 STPGEGTHFKVRL 937 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 129/249 (51%), Gaps = 18/249 (7%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ E L + +A A++ K+ F+ +S+E+R+P+ IIG T+L + + Sbjct: 434 LDITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTEL---ALMQEP 490 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K Y++ + S+ LL+++NDILDL+ ++AG ++L ++ L D+L+ + +++ Sbjct: 491 KAKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGA 550 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARD 715 + D + ++ D RL QIF ++ NA+ ++ G + + A+D Sbjct: 551 ERKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGVEDGRGAQD 610 Query: 716 NGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 G + SVK+ G IP+D +F F + A + G GLGL+I + + L Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTGARSAKYDGTGLGLAITKRLVEL 670 Query: 768 HGGHVSISS 776 GG +++ S Sbjct: 671 MGGRITVQS 679 >gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 962 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 14/232 (6%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D++K+ FV VS+ELR+PL++++GFT+L+ T +L +Q +Y+ I + L L Sbjct: 584 EVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKP--ERQKKYLTTIYQEAKRLTAL 641 Query: 624 VNDILDLATVDAGIMKLN--YSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGS 679 +ND LD+ +++G + Y IV ++ V Q + TK+H+ +++ + + LG Sbjct: 642 INDFLDVQRMESGKQTYDKKYEDIV--SIIENVIETQKVNTKIHQFHVQKETNNTTVLG- 698 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 DR +L Q+F+ ++SNA+ +S +G + ++ V++ G IPE+ ++F Sbjct: 699 ---DRDKLAQVFTNLISNAIKYSPEGGNITVRIYERGTRLCVDVQDEGLGIPEEAIPNLF 755 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F V N+ R + G GLGL+IV+ + H G VS++S + +T +P Sbjct: 756 TKFYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLP 807 >gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1198 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 135/245 (55%), Gaps = 8/245 (3%) Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L +K E L + + K+ F+ ++S+ELR+PL +I+ + L+ + +LN +Q + Sbjct: 506 AERNLEIQKKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMAENTEHNLNEEQIE 565 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 I +S LL L+++ILDL+ ++AG MKL + I ++ +++ +K + E N+ Sbjct: 566 SANVIQSSGASLLELIDEILDLSKIEAGKMKLEFQKIEISGIVSALKALFLPIIKEKNLD 625 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + +G + D+ R+ Q+ ++SNA+ F+S+GS + L+ +R+N + +F+VK+ G Sbjct: 626 FDIKIGADVGQIIETDKMRVEQVMKNLMSNAIKFTSRGS-IGLQISRENNNILFAVKDTG 684 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP + K +F F A RR G GLGLSI L GG + + S + + Sbjct: 685 IGIPAEQQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIAKLLGGEIRLLSKESEGSIF 743 Query: 785 NCRIP 789 +P Sbjct: 744 TLVVP 748 >gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 660 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E +A +A D++K++F+ ++S+E Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVTNAI 421 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG T+ + + + + V++ G IPED VF+RF Q G GLGLS Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500 >gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] Length = 815 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D +K+ FV +VS+EL++PLT I G+++LL K+ K Y + I S L Sbjct: 462 KELDRMKSEFVANVSHELKTPLTAIKGYSELL--IKMNLPPEKVRNYYQIIYKESERLTQ 519 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+ND+L+++ +++G ++L + + ++ E T+ ++ I V+ + +F+ Sbjct: 520 LINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKHTI---VLQFPEYPTFIL 576 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+F +L NA+ +S G + ++ + D + V++ G IP + +F+R Sbjct: 577 GDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMEDIVIEVQDQGIGIPPEHLPHIFDR 636 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V ++ R G GLGLSIV+S I HGG +S++S TT R+P + Sbjct: 637 FYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPRR 688 >gi|331017298|gb|EGH97354.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1123 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + ++AL + EA A+ K+ ++ +S+ELR+PL +I+GFT +L+ Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + I SS+ LL+L+N +LD+A ++AG +KL + I+ + L+++++ Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A E N+ ++ +G++ V D +R+ QI +L NA++F+ G V+L+ + Sbjct: 768 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 IF + ++G I + + +F F GVGLGL+I L GG +S+S Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886 Query: 776 SSDEGVTTINCRI 788 S+ T R+ Sbjct: 887 STPGEGTHFKVRL 899 >gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 752 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E AL E + A+ K+ F+ S+E+R+PL IIG + LL + SL Sbjct: 208 DVTNRTETEYALGEARDHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDT---SLT 264 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ YV+ + AS LL+L+ ++LD + ++AG + L +L+DL+ ++ + +A + Sbjct: 265 PEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQ 324 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF 721 + I D +L + D RL QI + NA+ F+ S G +I++ + G F Sbjct: 325 ARQLEIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRF 384 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I D VF F + R G GLGLSI + + GG +++ S Sbjct: 385 MVQDTGIGITPDAQARVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPG 444 Query: 780 GVTTINCRIP 789 +T IP Sbjct: 445 AGSTFEVSIP 454 >gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 870 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 146/257 (56%), Gaps = 15/257 (5%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 AQ++ + + D++ +T ++ A+ +AD++K++F+ ++S+E+R+PL I+GF+DLLK Sbjct: 622 AQSIQRYKDTEDAL-----ITARDHAM-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 675 Query: 596 TSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 L + + ++ Q +V I+ + T+LL L+NDILDL+ ++AG M+ N + LN ++ ++ Sbjct: 676 --DLNAFSKEEVQEFVGLINTNCTLLLALINDILDLSRIEAGTMEFNLAEFNLNYIMQDI 733 Query: 655 KQSIATKMHEN-NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 S M + +RI+ + +GK S D RL Q+ + +++NA F+ +GS I Sbjct: 734 YDSQYLSMPQGVELRIECPVEEGK--SIHTDIVRLKQVVNNLVNNAKKFTVQGSITIGYT 791 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + V++ G IPE+ K +F RF + Q G GLGLSI ++ + G + Sbjct: 792 VDEPEYTTVYVEDTGKGIPEEAAKHIFERFYKVDNFVQ--GAGLGLSICQTIVEHLRGTI 849 Query: 773 SISSSDEGVTTINCRIP 789 S+ S T R+P Sbjct: 850 SVFSQVGRGTRFEVRMP 866 >gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 593 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 8/243 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + E A++ K+ F+ ++S+ELR+PL IIGF D+L + G K ++Y+ Sbjct: 353 RRLQSEKELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGPAPPKHAEYLTA 412 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-- 670 I S LL+LVN++LD+A ++AG ++L + I L+D L + + + + Sbjct: 413 IHQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALALRKGVTLTGD 472 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728 I+ G L AD R+ Q +LSNA+ F+ G TV L+A D + +V+++G Sbjct: 473 AIAPGLL--VTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTVITVRDSGI 530 Query: 729 SI-PEDMCKSVFN-RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + E+M ++ R V N G GLGL + F+ HGG +++ S TT+ Sbjct: 531 GMNAEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRPGAGTTVTI 590 Query: 787 RIP 789 R+P Sbjct: 591 RLP 593 >gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483] Length = 810 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 143/268 (53%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSK 693 G Y+ + +N+ E+ +S++ K+ + +++I + L D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCTEIIKSMSMKVSKG---VELIFEEPLLECYLYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +GS + + F V++ G IPE+ KS+F RFV Q G Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EG+ Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796 >gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 960 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 17/253 (6%) Query: 551 AERALTEKNE---ALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 A R +TE+ + ALRKA ++ K F+ ++S+E+R+P++ I+G D+L G Sbjct: 566 AARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMGLMDMLLD---G 622 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 Q +++E I S+ L+++VNDILD + V+AG + ++ L+ EV Sbjct: 623 EATPAQRRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEY 682 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718 + +R+ D + + V+D +RL QI + ++ NA+ F+ +G +V L+A + Sbjct: 683 MAEQKELRLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQGEVSVRLRADTTDKL 742 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV ++GS IP+D +F RF + ++ + G GLGL+I + + GG + + S Sbjct: 743 LTLSVSDSGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGLVQALGGDIRVES 802 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 803 ELGAGSVFTVRIP 815 >gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 627 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 18/246 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L N L A K+ F+ H+S+ELR+PL I+GF++LL+ +GSLN +Q++++ + Sbjct: 360 RELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSLNEQQARHLTH 419 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I A LL + ND+LDLA V+AG ++L+ ++ + I + ++ + + Sbjct: 420 IQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTLTLH 479 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDN--------G 717 +D L AD R QI +LSNA+ F+ +G + + A AR N G Sbjct: 480 ADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGARLNPIPDTLYPG 539 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F+ +V + G I + +F F + Q G GLGL++ + + LHGG + Sbjct: 540 EFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGRIWA 599 Query: 775 SSSDEG 780 +S G Sbjct: 600 ASDGAG 605 >gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERAL----TEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++ D R+E AL EK EA A+ +K+ F+ +S+ELR+PL I+G++ LLKT Sbjct: 594 DIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLKT 653 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 KL K + ++ I ++ + ++L++D+LD++ + G + LN +T+ L D+++ + Sbjct: 654 GKLD--KDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGKLTLNVTTVNLADIISAALE 711 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 +++ I ++ + + +G D RL QI +LSNA+ F+ +G V+++ + Sbjct: 712 TMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSNAIKFTPQGGEVVVQLEQIG 771 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V + G I +F F R+ G+GLGL+IV + LHGG V Sbjct: 772 SMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGLGLGLAIVRHLVELHGGTVEA 831 Query: 775 SSSDEGV-TTINCRIP 789 S EG TT+ +P Sbjct: 832 DSPGEGQGTTLKVILP 847 >gi|301384781|ref|ZP_07233199.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060725|ref|ZP_07252266.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130813|ref|ZP_07256803.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1123 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + ++AL + EA A+ K+ ++ +S+ELR+PL +I+GFT +L+ Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + I SS+ LL+L+N +LD+A ++AG +KL + I+ + L+++++ Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A E N+ ++ +G++ V D +R+ QI +L NA++F+ G V+L+ + Sbjct: 768 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 IF + ++G I + + +F F GVGLGL+I L GG +S+S Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886 Query: 776 SSDEGVTTINCRI 788 S+ T R+ Sbjct: 887 STPGEGTHFKVRL 899 >gi|153831971|ref|ZP_01984638.1| para-aminobenzoate synthase [Vibrio harveyi HY01] gi|148871969|gb|EDL70792.1| para-aminobenzoate synthase [Vibrio harveyi HY01] Length = 566 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++ E L ++ EA KA + FV +++ELR+PL ++G DLL + L+ +Q Sbjct: 187 SLQREVELRKRAEASEKATK---EFVAMINHELRTPLNGVLGSADLLDKT---VLDDEQQ 240 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY+ + S +L ++ND+LD + ++AG+M++ DL N + A K E I Sbjct: 241 QYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 300 Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + D KLG + D +R+ QI ++ NA+ F++ G V+L+ NG F V+ Sbjct: 301 HFSI--DKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGG-VVLRVEWHNGYANFEVE 357 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP + K++F+ FV A R +R G GLGL+I ++ ++L GG +S +S Sbjct: 358 DTGIGIPLEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMGGDISFASVPRQG 416 Query: 782 TTINCRIPSKE 792 T +IP K+ Sbjct: 417 TIFKLKIPLKQ 427 >gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 580 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 14/238 (5%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E + E+ AL+ KA+E K+ F+ ++S+E+R+P+ +IG LL + SL+ Sbjct: 50 EAQVEERTAALKTAMSDAVKANEAKSQFLANISHEIRTPMNGVIGMATLLLDT---SLSD 106 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q Y I SS LL ++NDILDL+ ++AG ++L+ L D+++ V + +A Sbjct: 107 NQRHYATTIRESSDALLTIINDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPAAIS 166 Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS 722 ++ + +L S V D RL QI + NA+ F+ KG+ + + A+ +G F Sbjct: 167 RSLDLVSFLPMELQTSVVGDAGRLRQILLNLAGNALKFTDKGTVAVRVSEAKSSGKVRFE 226 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +++ G IP+D ++F++FV R+ G GLGL+I I+L GG + + S + Sbjct: 227 IEDTGIGIPQDQLPTLFDKFVQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQSEE 284 >gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 633 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + + E +A+++K++F+ ++S+E+R+PL I+GF++LL S+ + + Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445 Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +EY I ++ +LL L+NDILD++ +++G+ + + + N L++EV+Q ++ + Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + F D+ RL+Q+ + ++ NA+ F+S+G I +D F V + Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + + C+ VF RFV + +G GLGLSI + I GG + + S Sbjct: 566 GCGMSVEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613 >gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1037 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 13/255 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R ++ L + E A++ K+ F+ ++S+ELR+P I+G LL+T+ +L+ Sbjct: 635 DITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQLLQTT---TLD 691 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV+ SS L++DILDL++V+ G M + S L + L + Sbjct: 692 EEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHDIFDASAR 751 Query: 664 ENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 E + ++ + D + D R+ QI ++SNA+ F+ KG I L AA+ GD Sbjct: 752 EKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVVEIRLDALCAAK-GGD 810 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+V + G IPED K++F F + ++ + +G GLGLSIV+ + L G++ I Sbjct: 811 VRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNIDI 870 Query: 775 SSSDEGVTTINCRIP 789 S TT++ +P Sbjct: 871 DSLPGEGTTVHVVLP 885 >gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1194 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 3/234 (1%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +D +RA+ L L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L + Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRAGNLTEE 525 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q +Y E I AS++ LL L+NDILDL+ V+AG + + T+ ++ L +++ Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAAR 585 Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +R+ G +F++D QR+ QI +LSNA+ F+ G + A + G V+ Sbjct: 586 QLRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPAEGGMLRIDVR 645 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++G I D +F F + Q G GLGLSI F L GG ++++S Sbjct: 646 DSGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699 >gi|2599570|gb|AAB84171.1| hybrid histidine kinase [Dictyostelium discoideum] Length = 709 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 146/283 (51%), Gaps = 21/283 (7%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573 +++S++PL N + ++ + N+T+ E + KN LR + DE+K F Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PL I+G TD L + +N ++ +E ++ ++ LL +VN++LD++ + Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +AG M LNYS + L + + E ++ +I+ + D ++ ++ + Sbjct: 275 EAGKMNLNYSMVNLGQTAHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334 Query: 694 ILSNAMDFSSKGST--VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 ++SNA F+ G IL+ + + F V + G IP+++ + +F RF V + Sbjct: 335 LISNAFKFTPSGGAGKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGLSIV+ F+ LHGG V+I + G R+P Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437 >gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 1068 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 18/249 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + + L KN L + + +K+ F+ +S+EL++PLT ++G + LL LG LN Sbjct: 348 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGELN 407 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------- 654 +Q++Y I S L+++VNDILDL ++ G M+L S + + ++ + Sbjct: 408 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVEARSVHN 467 Query: 655 ---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ + HE ++ I + L VAD RL Q+ +L NA F+ V L+ Sbjct: 468 QTGRKGESLPSHEFSLSI----EPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLR 523 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 R G F+V + G IP+ +F +F + N Q G GLGL + + LHG Sbjct: 524 VNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHG 583 Query: 770 GHVSISSSD 778 G VS S + Sbjct: 584 GDVSFLSRE 592 >gi|329934254|ref|ZP_08284333.1| histidine kinase [Streptomyces griseoaurantiacus M045] gi|329305850|gb|EGG49705.1| histidine kinase [Streptomyces griseoaurantiacus M045] Length = 460 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K L++A E K F ++S+ELR+P+ ++G + LL T L+ +Q + VE I+ Sbjct: 205 LEDKRRQLQEASEAKTRFWTNISHELRTPVNAVVGLSRLLLTPGPSPLSPEQQEQVELIA 264 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS +L LV+D+LD+A +AG ++++ + + ++ + + + E +R+ + Sbjct: 265 ASGHTMLALVSDLLDVAKAEAGHLEIHAEPVDIRLVVTHLGGLLRSHA-EGGVRLVLPPL 323 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--FIFSVKNNGSSIP 731 + V D L++I +LSNAM F+ +G + + A D D IF+V + G IP Sbjct: 324 DDAPALVTDETLLVRILRNLLSNAMKFTERGEVRLDVTADPDVHDRAVIFTVTDTGVGIP 383 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF F V H+ R G GLGL + L GG +S++S+ T + R+P Sbjct: 384 AEEIDRVFEAFYQVRGPHQRGRPGTGLGLPYARTLAELLGGSLSLTSTVGEGTRVRVRVP 443 >gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 660 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579 V+E P+ N Q + + V D + + E +A +A D++K++F+ ++S+E Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+DLL ++ ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++ Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L Y L NE+ S+ ++ +R+ ++ + + D+ RL QI + ++NA+ Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 ++SKG T+ + + + + V++ G IPED VF+RF Q G GLGLS Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478 Query: 760 IVESFINLHGGHVSISSS-DEG 780 I ++ + G + S D+G Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500 >gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 584 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 174/358 (48%), Gaps = 37/358 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWD 498 ++ + EGV V D + L NPAF +++ T E + P I +R+ D Sbjct: 253 LNGMGEGVMVTDRDAVVTLVNPAFCTMFATGAELQGRPLLQI-------TRHP------D 299 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERAL 555 L+AA E+LS ++ I L +T+L + D ++ A+ Sbjct: 300 LYAA--------------CREVLSARQEQHQEIALAGGKTVLVHWVPLRDGDGLQGAVAV 345 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 A ++ ++I+ FV +VS+ELR+P+T I G+ + L + L + + +++ I Sbjct: 346 FHDISAFKRVEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPERAERFLLIIQN 405 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L LV D+L L+ +++G M + + L++ + + + + E ++++ + G Sbjct: 406 HADRLSGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPA-G 464 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 + G V ADR RL Q+ +L NA+ +S G +V ++ AR+ GD + SV+++G IPE Sbjct: 465 EAGLTVQADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEK 523 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V A G GLGLSIV+ + HGG + + S + + +P Sbjct: 524 DLPRLFERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLP 581 >gi|75907244|ref|YP_321540.1| histidine kinase [Anabaena variabilis ATCC 29413] gi|75700969|gb|ABA20645.1| histidine kinase [Anabaena variabilis ATCC 29413] Length = 1109 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 136/272 (50%), Gaps = 20/272 (7%) Query: 525 VLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +L+ + + LPN + + +VT+ + + L KN L + + +K+ F+ +S+EL++ Sbjct: 353 LLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKT 412 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PLT ++G + LL +LG LN +Q++Y I S L+++VNDILDL ++ G M+L Sbjct: 413 PLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTP 472 Query: 643 STI----VLNDLLNEVKQ----------SIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 + V + L+E K + AT+ + + D L VAD RL Sbjct: 473 VPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSIELD--LDQIVADELRLR 530 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 Q+ +LSNA F+ + L+ + G F+V + G IPE +F +F + N Sbjct: 531 QMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENP 590 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL + + LHGG VS S + Sbjct: 591 LTRQFEGTGLGLVLTRALARLHGGDVSFLSRE 622 >gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 920 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 2/232 (0%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E LR+ D K+ FV VS+ELR+P+ +I+G+T+LL+ + +Q +E I+ + Sbjct: 686 ERLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPMLESIARNGQR 745 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ L +D+L L+ +D+G + T+ L LL +++I ++ ++ + ++++ Sbjct: 746 LILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAEPAPVL 805 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + DR +L + +L NA+ F+ G + + R + + S+ + G IP + +F Sbjct: 806 VLGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGIPVEEQNGLF 865 Query: 740 NRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF S A +G GLGLSIV + + HGG + + S+ TT R+P Sbjct: 866 QRFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLP 917 >gi|307154390|ref|YP_003889774.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984618|gb|ADN16499.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 561 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + L A + + F+ H +ELRSPLT I+ F+ +L GSLN+KQSQYV+ I Sbjct: 325 LEAQKQQLEFAKKKTSEFLDHTIHELRSPLTGILSFSQILHEQIYGSLNAKQSQYVDVIV 384 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +L+LVND LDL+ + A ++ + + D+ + + + + +K+ Sbjct: 385 SSGQYMLSLVNDFLDLSKISAQREEIVLEAMAVEDVCLAALAMVEVRAVASQLTLKLDIA 444 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + AD++R+ QI +L+NA+ F+ KGS V LK R FSV + G I + Sbjct: 445 PDVDFCKADQRRIKQILVNLLTNAIKFTEKGS-VTLKVERKQDYLDFSVIDTGIGIKTED 503 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F + N + +G GLGL++ LHGG +++ S + + +P Sbjct: 504 QNKLFQPFQQIKNHLSRKHKGTGLGLALSRQLAQLHGGDITLVSQEGQGSCFTLHLP 560 >gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 822 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 144/269 (53%), Gaps = 13/269 (4%) Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 +LE + + + + +F+ +T+ ER L +A KA+ K+ F+ +S+E+R+PL Sbjct: 279 LLEVTPMQGESGGAVASFIEITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPL 338 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 IIG TDL S+ L++KQ++ +E + S+ LL L+NDILDL+ V+A ++ L S Sbjct: 339 NAIIGLTDLTLRSE---LSTKQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESD 395 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L++ + +V +S+ + + + + + + D + D+ RL QI ++ N++ F+ Sbjct: 396 FSLSEAMRDVVRSMEQQARDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTE 455 Query: 704 KGSTVI----LKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 G + L+ +D+ + + SV++ G IP++ VF F R+ G G Sbjct: 456 NGGVFVQVSKLEDRKDSDEAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTG 515 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTI 784 LGL+I + + GG + + SS EG ++ Sbjct: 516 LGLAISRELVEMMGGRIGVKSS-EGFGSV 543 >gi|153869355|ref|ZP_01998987.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074121|gb|EDN71011.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1314 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 40/280 (14%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A A K L A+ K+ F+ ++S+ELR+PL +++ LL +K G+LN KQ +Y Sbjct: 594 KARTAAELKARELELANRYKSEFLANMSHELRTPLNSLLILAQLLVDNKHGNLNDKQVEY 653 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S LL L+N+ILDLA V+AG ++++ I L DL+ ++ + E ++ Sbjct: 654 AKTIHSSGADLLKLINEILDLAKVEAGKIEIHNEDISLADLVETLEHKFHPLIEEQDLNF 713 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------------------- 709 ++ L + DRQRL QI + +LSNA F+S+G + Sbjct: 714 QITVANDLPDILHTDRQRLTQILNNLLSNAFKFTSQGEVRLKIQSASSLSGPHPSPLPEG 773 Query: 710 ------------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 L R G IFS+ ++G IP D + +F F R Sbjct: 774 EGENIGPFLLGEGQLPRPLGEGRGEGLIIFSITDSGIGIPNDKQQVIFEAFQQADGTTSR 833 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R G GLGLSI L GG + + S + +T +P Sbjct: 834 RYGGTGLGLSISRQLARLLGGDILLHSEENKGSTFTLCLP 873 >gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 499 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 3/250 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE AL K A + K+ F+ VS+EL++PL +IIGF+DLL G L+ Sbjct: 225 DITERQRAEDALL-KVRIAEDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLS 283 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++Y+ IS S LL ++DILDL+ ++AG L + ++++ ++ Sbjct: 284 ERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFEFTKIFKDIEKVFRPRVS 343 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + D + SF AD+ QI ++SNA+ F+ + ++ + AA+ V Sbjct: 344 GKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEGSITVSAAKIGNMVRICV 403 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G I + S F F +RR GLGL +V+ F+ +HGG++ S Sbjct: 404 KDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKRFVEMHGGNIQAESVPGEG 463 Query: 782 TTINCRIPSK 791 ++ +P K Sbjct: 464 SSFIIELPLK 473 >gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07] gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07] Length = 995 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V ERA + EA R+A E K+ F+ +S+E+R+P+ ++G +LL+ ++L Sbjct: 352 VTVERAQADALEAARQAAESALRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTRL---ER 408 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q + V S LL++++D+LD A ++AG + + + L +L + +A++ HE Sbjct: 409 EQQRMVTLAQESGRALLHILDDVLDHAKIEAGHLAITPAPTDLRELFDSTVGLLASRAHE 468 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719 ++ ++V D + + V+ D RL Q+ S +LSNA+ F+ +G S ++AA D Sbjct: 469 RSLAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKFTERGSVRLSAACVEAAADTVRL 528 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I V + G I + ++F FV R R G GLGL+I L GG + + S+ Sbjct: 529 IIRVSDTGIGIAPEAQATLFTPFVQADSRTTHRHGGTGLGLAISRQLARLMGGSLDMDST 588 Query: 778 DEGVTTINCRI 788 TT+ R+ Sbjct: 589 PGVGTTLTLRL 599 >gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 1056 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 18/249 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + + L KN L + + +K+ F+ +S+EL++PLT ++G + LL LG LN Sbjct: 336 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGELN 395 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------- 654 +Q++Y I S L+++VNDILDL ++ G M+L S + + ++ + Sbjct: 396 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTEARAVHT 455 Query: 655 ---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ + HE ++ I + L VAD RL Q+ +L NA F+ V L+ Sbjct: 456 QTGRKGESLPSHEFSLTI----EPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLR 511 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 R G F+V + G IP+ +F +F + N Q G GLGL + + LHG Sbjct: 512 VNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHG 571 Query: 770 GHVSISSSD 778 G VS S + Sbjct: 572 GDVSFLSRE 580 >gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 910 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ IK+ F+ VS+ELR+PL I+G+T +L+ KL + Q++ +E I + L Sbjct: 669 EANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDA--ESQARALETIERNGRAQNQL 726 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + DILD++ + G +KL+ + L ++ E S+ +I + D + S D Sbjct: 727 IEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIALHCTLDAEAASVSGD 786 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+ +LSNA+ F+ +G + ++ A D + SV+++G I + +F RF Sbjct: 787 PARLQQVVWNLLSNAIKFTPEGGRIDVRLAADGASALLSVRDSGVGITPEALPYIFERFR 846 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791 R G+GLGL+IV + LHGG V+ S G + R+P + Sbjct: 847 QADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAVRLPRR 897 >gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 759 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 11/239 (4%) Query: 546 TDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 T S R ER AL E +A A+ K+ F+ ++S+E+R+P+ +IG +L+ + L+ Sbjct: 215 TFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLD 271 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q+ Y E IS S + LL ++NDIL+ + ++AG M+L + L + +V ++ K Sbjct: 272 EDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAA 331 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 E N+ + + D L + D R+ QI + + NA+ F+ KG I + + D Sbjct: 332 EKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTAL 391 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G+ IPED +FN F A G GLGL+I + L GG +S+ S Sbjct: 392 RISVTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQS 450 >gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39] Length = 959 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 102/393 (25%), Positives = 176/393 (44%), Gaps = 49/393 (12%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E KY ++ ++ +EG+ PDGR +NPA + + SP I N+ Sbjct: 557 EAKYRSI-------FENAAEGICQTTPDGRYISANPALARILGYD----SPEDLIANLTD 605 Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 ++ Y + F A +I+ F+ + GT +S+ NA+ + Sbjct: 606 VSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISE-----------NARAV 654 Query: 540 L-----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 T ++T+ RA AL EA A+ K++F+ ++S+ELR+PL II Sbjct: 655 FDAIGELVCYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 714 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G++++L +E I + LL L+NDILD++ ++AG M L ++ Sbjct: 715 GYSEILLEEAEELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVS 774 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 LL V + M +NN + V +G AD ++ QI +LSNA F++ G Sbjct: 775 GLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTDGKIK 834 Query: 709 I-------LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 I L ++++G + F V + G + + + +F F RR G GLGL Sbjct: 835 IEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLGL 894 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +I + F + GG++ + S+ +T IP++ Sbjct: 895 AISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTR 927 >gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 581 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 161/353 (45%), Gaps = 30/353 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFA 501 + EGV V G I L NPAFR + PG R + C R+ + Sbjct: 253 MGEGVMVTDTKGNIILVNPAFRKQFGL------PGEVEGRPLVEVC-RHPD--------- 296 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSV-RAERALTEKN 559 ++ +F+++R+S D V IP+ N M +V +T DS R A+ Sbjct: 297 -LLQAFEEQRES--------GDEVSCEITIPITNLVLMAHWVPLTRDSGNRGTVAVFHDI 347 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 L++ + ++ FV +VS+ELR+P+ I G+ + L L + ++VE I + + Sbjct: 348 SDLKRVETMRRDFVANVSHELRTPVAVIKGYGETLLDGALEESPERSRRFVEIIVSHAER 407 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L NL+NDIL L+ ++A L + L + + + + IRI + Sbjct: 408 LTNLINDILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPK 467 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD+ +L Q+ +L NA+ ++ G V + A + + +V + G IP +F Sbjct: 468 VLADQGQLEQVLLNLLDNAIKYTPDGGDVTVAARLEQERVVVAVSDTGIGIPARDLPRIF 527 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF V ++ G GLGL+IV+ + LHGG V ++S +T +P+ Sbjct: 528 ERFYRVDEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLPT 580 >gi|319778144|ref|YP_004134574.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171863|gb|ADV15400.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 811 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 7/240 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ ++ ++KN F+ VS+ELR+PLT+I G L+ G L K + V Sbjct: 306 RDITEQ----KRTAQLKNDFISTVSHELRTPLTSIRGSLGLIAAGVAGELPPKAANLVNI 361 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S L+ L+NDILD+ +++G++ + + +L + + + M ++ IRI ++ Sbjct: 362 AHTNSERLVLLINDILDMEKIESGVITFKIKQMPVRQVLEQAIAASSNYMADSRIRIVLV 421 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731 D D RL Q+ + +LSNA+ FS TV +K R + D + SV + G+ IP Sbjct: 422 DDAPRAEANIDPDRLHQVMANLLSNAIKFSQTDGTVTVKFQRRDRDMLRISVVDQGAGIP 481 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E +F +F R+ G GLGLSIV+S GG VS + + T+ + +P Sbjct: 482 EAFRSRIFGKFEQADASSTRKIGGTGLGLSIVKSITEKLGGAVSFETEEGQGTSFHVDLP 541 >gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 1029 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 6/254 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VT+ V AER L E +A +K++F+ ++S+E+R+PLT I+GF +LL Sbjct: 773 MADVTELVEAERQLKAAKERAEEASRLKSAFLANMSHEIRTPLTGILGFAELLDEELETR 832 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ I S+ LL L+NDILDL+ ++A ++L + D+ + Q + Sbjct: 833 QQEDLREFTHIIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQLMQPL 892 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E +++++ ++ L + AD RL Q+ +LSNA+ F+ +G V ++ + G + Sbjct: 893 AEEKGLKLELHAEENL-TARADPNRLHQVLVNLLSNAIKFTDEGH-VRVELGQKKGWVLL 950 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V++ G I + +F F H G + +GVGLGL+IV+ I+L G +++ S Sbjct: 951 AVEDTGCGISPEFLPHLFEPF-RQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEV 1009 Query: 779 EGVTTINCRIPSKE 792 T +PS E Sbjct: 1010 GRGTRFEILLPSVE 1023 >gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1352 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 12/246 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N AL++ D +K F+ +VS+ELR+PL +I+G+T LL G++N Q + + + Sbjct: 843 LGEANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQQKSLLRVE 902 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL L+ND+LDL+ + AG ++LN L+++L+E Q + I +KV + Sbjct: 903 KASNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAKEISLKV-EE 961 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVI----LKAARDNG---DF-IFSVKN 725 ++ + DR +++Q+ +LSNA+ F+ S G I + +G D+ + + Sbjct: 962 SEVPPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIKDYAAVRISD 1021 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I ED +++F FV RR G GLGL I + +HGG + + S +T Sbjct: 1022 TGIGIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWVESEYGKGST 1081 Query: 784 INCRIP 789 +P Sbjct: 1082 FTFILP 1087 >gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] Length = 630 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L E +D K+ F+ ++S++ R+P+ I+G + + Sbjct: 233 DITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILGIAQIFN---MHEHT 289 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +SAS+ +LL LV DILD A ++ G ++L YST L L+ + ++ + + Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I+I V D L S V++ + +IF ++ NA+ F+ KG + N + Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409 Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 VK+ G IP+D ++F+RF + + + G+GLGLSI++ ++ GG V +SS Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 469 Query: 778 DEGVT---TINCRIPS 790 +EG T TI C I S Sbjct: 470 NEGSTFTLTIPCEIAS 485 >gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] Length = 551 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L E +D K+ F+ ++S++LR+P+ I+G + + Sbjct: 154 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 210 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + +SAS+ +LL LV DILD A ++ G ++L YST L L+ + ++ + + Sbjct: 211 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQ 270 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I+I V D L S V++ + +IF ++ NA+ F+ KG + N + Sbjct: 271 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 330 Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 VK+ G IP+D ++F+RF + + + G+GLGLSI++ ++ GG V +SS Sbjct: 331 ILVKDTGLGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 390 Query: 778 DEGVT---TINCRIPS 790 +EG T TI C I S Sbjct: 391 NEGSTFTLTIPCEIAS 406 >gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1105 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 178/361 (49%), Gaps = 31/361 (8%) Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 +Q + +++++EGV + G + L+N ++ +EN L G H+ +I + S N Sbjct: 487 IQAKILENMAEGVNLTTESGLMLLTNRLLTRMFGYDENELI-GQHV-SILNSLSPEENMV 544 Query: 495 DGWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 + A + T F++++K GT + Y+ I + FV V + Sbjct: 545 FVNHVIADLQTKEIWEGEFNNQKKD--GT------HFISYAYISALDISGQHYFVTVQED 596 Query: 549 V----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + +AE AL + E A+ K+ F+ +S+E+R+P+ ++GF++LL S+L + N Sbjct: 597 ITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELL--SELVT-NK 653 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q Y++ I + LL L++DILDLA ++AG + + Y + ++ E+KQ K+ + Sbjct: 654 QQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQIFVLKIVD 713 Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK-----GSTVILKAARDNGD 718 + V D L + + D RL Q+ ++ NA+ F+ K G+ I K + D Sbjct: 714 KQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKGYIKLGAQKIDKMDKSKID 773 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + SV++ G IP + +F F + R+ G GLGL+I + + G +S++ Sbjct: 774 LLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMMNGDISVTG 833 Query: 777 S 777 + Sbjct: 834 T 834 >gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1099 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T ER L E EA + K+ F+ +S+E+R+P+ +IG T LL +K Sbjct: 433 VLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTK 492 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q + E I S LL ++NDILD + ++AG + L+Y+ L L+ V + Sbjct: 493 L---TEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDIL 549 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + H I I + D +L V +D RL Q+ + NA+ F+ KG I L+ Sbjct: 550 APRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERP 609 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G IP + +F+ F+ RR G GLGL+I L GG Sbjct: 610 GAQPMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGE 669 Query: 772 VSISS 776 V + S Sbjct: 670 VGLES 674 >gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1068 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 137/265 (51%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A++ L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+V Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTG 456 Query: 649 DLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++ + + + +++ + G V D QRL QI +L+NA+ F+ G Sbjct: 457 SVLQRLRDTFEPLARQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 +L A G F+V + G I + + +F F +RR G GLGLSI Sbjct: 517 GLLVQASAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG +S+ S + +P+ Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601 >gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 957 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D++K+ FV VS+ELR+PL +++GFT+L+ L +Q +Y+ I + L +L Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLKE--ERQKKYLTTIYQEAQRLTSL 638 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVA 682 +ND LD+ ++AG K Y D+L +KQ I K+ + +ISD + + + Sbjct: 639 INDFLDVQRMEAG--KQTYDK-KYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVMG 695 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ +LLQ+F+ ++SNA+ +S G V +K + +++ G IP +F +F Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPNKALGQLFTKF 755 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N+ + G GLGL+IV+ + HGG +++ S + TT +P Sbjct: 756 YRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804 >gi|294633343|ref|ZP_06711902.1| sensory box histidine kinase/response regulator [Streptomyces sp. e14] gi|292831124|gb|EFF89474.1| sensory box histidine kinase/response regulator [Streptomyces sp. e14] Length = 604 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 8/243 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K L +AD K+ F +VS+ELRSP+ ++I LL S L +Q + V + Sbjct: 173 LEDKTRQLERADAYKSRFWANVSHELRSPVNSVIALARLLLDSAADPLTDEQRRQVSLVQ 232 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS + LL LV+++LD+A ++G ++ + + + L LL++++ + + + +++ Sbjct: 233 ASGSTLLALVDELLDIAKAESGRLEPHPAEVDLRSLLHQLR-GMLQGTAQPGVDLRIPDH 291 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD-FIFSVKNNGSSI 730 L V D L +I +LSNA+ F+ G V L+ A R++GD F+F V++ G I Sbjct: 292 IPLRPLVTDEVMLTRILRNVLSNALKFTV-GGRVALEVAEEEREDGDRFVFRVQDTGVGI 350 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + VF F V H+ R G GLGL L GG +++ S T + I Sbjct: 351 PAEELERVFEEFYQVRGPHQRGRAGTGLGLPYARRLTELLGGRLTLDSEVGRGTRVIIEI 410 Query: 789 PSK 791 P++ Sbjct: 411 PAR 413 >gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 810 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ +E+ +S+ K+ + +++I + D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +GS + + F V++ G IPE+ KSVF RFV Q G Sbjct: 712 FINNALKFTQQGSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EGV Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796 >gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 505 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 133/248 (53%), Gaps = 2/248 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ AE+A+ E N L D IK+ F+ ++++ELR+PL +I GFT+L+ +G +N Sbjct: 257 DITERKIAEKAMEEANRELELLDNIKDQFLTNLTHELRTPLISIKGFTELMLEDHMGPIN 316 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + + +S L +LV +L ++ +K N + L + E+ ++ + Sbjct: 317 DAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKNIKYNMDVLSLTKITEEILETFTAPIL 376 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + I+ L + + D+ L ++ + +L NA+ F+ +G + + A D+ I ++ Sbjct: 377 KKGLTIERNIQTDLPTILGDKDHLKRMINHLLDNAIKFTPEGGKIGISALHDSESVIINI 436 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G IPE++ ++F+RF V + R + G G+GL I + I H G +S+SS Sbjct: 437 EDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGTGVGLHICKKIIEAHKGSLSVSSKIGEG 496 Query: 782 TTINCRIP 789 T I+ ++P Sbjct: 497 TIISVKLP 504 >gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 26/280 (9%) Query: 537 QTMLTFVNVTDSVRAE-RALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNII 588 +++LT S+R R L++KN E L++ D +K++F+ VS+ELR+PLT+I+ Sbjct: 240 KSLLTSTMHVASIRESFRELSQKNAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIM 299 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G++++L G L +Q ++++ I + S LL L+ +LDL+ +++G + ++ + + + Sbjct: 300 GYSEMLAEGIGGPLTDEQREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVG 359 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +L E +IA + + +++ ++ L + D RL Q+F ++ NA+ F+ G V Sbjct: 360 PVLVEAASTIAPAASKKGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEV 419 Query: 709 ILKA---ARDNGDFI-------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750 +L A + D D V + G IP VF+ F + + + Sbjct: 420 LLVARAVSEDMDDLPGLVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTRE 479 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSIV+ + H G V I +D T ++P+ Sbjct: 480 HGGTGLGLSIVKRLVEAHSGTVRIEPNDPRGTVFVVKLPT 519 >gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 779 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 137/270 (50%), Gaps = 5/270 (1%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 D L ++I L Q L + + A++ EKN A A+ K+ F+ ++S+ELR+ Sbjct: 492 DLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRA-EDANRAKSKFLANMSHELRT 550 Query: 583 PLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 PL IIGF++++ G+L S K S+Y I S LL ++ND+LD++ ++AG L+ Sbjct: 551 PLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRTNLD 610 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 T+ L +L+E + ++ + + + V SD + S +ADR+ + QI +LSNA+ F Sbjct: 611 METLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRRAVKQIMVNLLSNAVKF 669 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 + ++ ++ ++ + G I + + F V + G GLGL+ Sbjct: 670 TPASGRIMARSKVFENSVTLTIADTGIGIAPHALRRLGKPFEQVESQLTKTHAGSGLGLA 729 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 I +S +NLH G + I S T + +P Sbjct: 730 IAKSLVNLHSGSMRIRSKPGAGTVVRVTLP 759 >gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] Length = 960 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 16/295 (5%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RK 564 ++ + G LS ++ Y P + + V V DS RAE+A E+ +AL + Sbjct: 387 QKMGMDGKYHWLSVQII-YVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKA 445 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ +S+++R+P+ I+G + + + KL S Q + + I ASS LL+L+ Sbjct: 446 ANQAKSDFLSRMSHDIRTPMNAIVGMSTIGQL-KLDDRRSVQDCFCK-IDASSRYLLSLI 503 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683 NDILD++ ++ G M+L + +L++EV Q I + E I + L F + D Sbjct: 504 NDILDMSKIETGKMELAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGD 563 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNG--DFIFSVKNNGSSIPEDMCKSV 738 RL QI +LSNA+ F+ G + I + R NG F VK+ G + + + Sbjct: 564 PLRLKQILMNLLSNALKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRL 623 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F F A R G GLGLSIV + + L GG + + S E + +P K Sbjct: 624 FMPFEQEAPETARNNIGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPFK 678 >gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1295 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA R L K L + K+ F+ ++S+ELR+PL +I+ + LL +K G+L +Q ++ Sbjct: 549 RARRELETKARDLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNLQPRQLEF 608 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S + LL+L+N++LDL+ ++AG M++N T+ L ++++ + + +N +R+ Sbjct: 609 ANTIHNSGSDLLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQNGLRL 668 Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------D 715 I+ + D RL QI +LSNA+ F+ +G + L+ R Sbjct: 669 SGEITPEAPATIFTDETRLRQILKNLLSNALKFTQQGE-ITLRCGRPARAELPTGLRLVP 727 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V ++G I D + VF F R+ G GLGLSI L GG +S Sbjct: 728 ERAVYFAVSDSGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELS 787 Query: 774 ISSSDEGVTTINCRIP 789 +SS + TT +P Sbjct: 788 VSSCEGEGTTFTLWLP 803 >gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 3470 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD K FV VS+ELR+PLT I GF DLL +G L+ Q + + + ++ ++ L Sbjct: 3228 EADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDPQREMLNTVKTNAMRMVGL 3287 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V D+L++ ++AG + LN + +N L+ ++ + ++ + N+ +K+ D L D Sbjct: 3288 VEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDTLPLIEYD 3347 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 +R+ Q+ + ++SNA+ ++ G VI++ + I VK+ G + + KS+F RF Sbjct: 3348 SKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQKSMFKRF 3407 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + R + G GLGLSI +SFI LH G + + S +T + +P Sbjct: 3408 YRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456 >gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 464 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + L++ D +K++F+ +S+ELR+PLT++IG+++++ G L ++Q +Y+ Sbjct: 204 RELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGI 263 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I LL L+ ILD++ ++AG ++L S + D ++ +IAT + + +KV Sbjct: 264 IMEKGENLLQLITSILDISKIEAGRVRLVLSDV---DATQIMRDAIATVLPLARKKGLKV 320 Query: 672 ISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSS 729 D G + ADR +L Q + SNA+ F+ G T+ + A GD V + G Sbjct: 321 ACDAGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVADTGIG 380 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ VF+ F V + + G GLGL+IV+SF+ HGG V + S TT Sbjct: 381 IGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGTTFTVI 440 Query: 788 IP 789 +P Sbjct: 441 LP 442 >gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 576 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 131/260 (50%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L +LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715 I++K+ ++ G DR++ QI +L+NA+ FS G V L +A Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVI 470 Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 GD+ SV + G I + +F F S G R G GL Sbjct: 471 EGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|83944788|ref|ZP_00957154.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851570|gb|EAP89425.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 577 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA+ K+ F+ ++S+E+R+PL ++G LL+ ++L + +Q YV +++S T L L Sbjct: 200 KANAAKSRFLANMSHEIRTPLNGVMGMAQLLEQTEL---DDRQRDYVRMLNSSGTALRGL 256 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682 ++D+LD++ ++AG ++L+ + DLL +IA++ + +++ +L + VA Sbjct: 257 IDDVLDISRIEAGELELDDTPYRPADLLRNTADTIASQAASKKLTVELDIAPELEALVAG 316 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D R+LQI + NA+ F+ G+ I + G SV + G I D KS+F RF Sbjct: 317 DATRVLQILTNFAGNAVKFTDVGAIAISGRVLETGQMELSVSDTGPGIAPDQVKSIFERF 376 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + ++ Q G GLGL+I + L GG + + S + R+P + Sbjct: 377 SQLDDSVGRQHEGAGLGLTIAQEIAVLAGGDIGVESELNAGSRFWVRLPHR 427 >gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 936 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 743 -SERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 802 KE---EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911 >gi|297582973|ref|YP_003698753.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141430|gb|ADH98187.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 457 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 11/251 (4%) Query: 549 VRAERALTEKNEAL-RKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +R + E E L R A E+ + + + ++S++LRSPLT++ GF L+ + Sbjct: 205 IRTRDEIGELGETLNRMASELATIESTRKTILANISHDLRSPLTSVKGFLIALEDGTIPV 264 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 K+ Y E I + + ++ LVNDIL+L +++G + L+ T L D LNE +S Sbjct: 265 --EKRFSYYERIRSETDRVITLVNDILELTRIESGGITLDRETYDLTDQLNEQIRSFEKP 322 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 M + I++ + G S AD RL +++ +L NA+ ++ +G +V + A Sbjct: 323 MADKGIQLHFEPAARDGLSVYADYNRLNRVWQNLLENALRYTPEGQSVTVSAVHSVHLVT 382 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V N+G+ IPE+ ++ RF ++ R + G G+GLSIV+S LHGG V + S++E Sbjct: 383 VHVTNSGTVIPEETLPLIWERFYKADDSRSGKGGSGIGLSIVKSITGLHGGTVDVDSNEE 442 Query: 780 GVTTINCRIPS 790 TT + +PS Sbjct: 443 SGTTFSVTLPS 453 >gi|108763603|ref|YP_632616.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467483|gb|ABF92668.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1109 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 25/347 (7%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++ +++GV + I + NPA R L EN P +R E G+ Sbjct: 315 VESMADGVVLTDEKNDIVVMNPAARRLLHAGEN---PEEQ-------TTRLMEERLGFQP 364 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F + + L+ ++L D ++ ++ P+ +A+ L V V R +TE+ Sbjct: 365 FHLVRGWEYGGGQVLREEVKLF-DRHVQTTVTPVTDARNTLRGVCVV-----LRDITEQ- 417 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 ++ +E K+ FV VS+ELR+PLT+I G DL+ G +N +Q +Y+ S+ Sbjct: 418 ---KRLEERKDEFVSMVSHELRTPLTSISGALDLVLNFMAGDINERQRRYLSLARDSTEK 474 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +V+D+LDL+ G +++N+ L++L+ V + E + +K + Sbjct: 475 LNAIVDDLLDLSKFAKGRLRMNFEVSYLDELVQRVVEKYGPAFGEKRVLVKPVLPRHPLR 534 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMCK 736 +AD RL Q+ + +L+NA+ F+ +G V I + G + S N+G I E+ + Sbjct: 535 VLADPNRLDQVLNNLLNNAVKFTPEGGEVRVEIHATSSLPGYVVVSCWNSGDPISEESLE 594 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F+RF + R RG GLGL+I + + HGG + +GV Sbjct: 595 RIFDRFEQARTKANRTVRGTGLGLAICRNIVEAHGGRIWCEPCTDGV 641 >gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum] Length = 1223 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 24/285 (8%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573 +++S++PL + + + N+T+ AE + KN LR + DE+K F Sbjct: 136 IDFSLMPLFDENGAVKLILPEGRNITEKKLAEDEIARKNNELRSLYEKIKELDELKTQFF 195 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PLT I T+ K K +++ + +E ++ ++ LL VN++LD++ + Sbjct: 196 ANVSHELRTPLTLISHPTE--KLLKDPGVSADAKKLLEVVARNTRGLLKHVNNLLDISKL 253 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIF 691 +AG M +NYS + + + + + I DG L + + DR ++ ++ Sbjct: 254 EAGKMNVNYSMADVGKTITTIGLCFELLAKDKKLEYIINAPKDGLLMAAI-DRDKIERVV 312 Query: 692 SKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 + ++SNA F+ G + + D N F+ +V + G +PED +F RF Sbjct: 313 TNLISNAFKFTPTGGKIRISVEPDQLNQNPAFLVTVADTGPGVPEDQYDIIFERFRQVDG 372 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN-CRIP 789 RR G GLGLSIV+ F+ LHGG+V +++ EG + RIP Sbjct: 373 SSSRRHGGTGLGLSIVKEFVQLHGGNVQVTAQKEGTGAVFLIRIP 417 Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 40/254 (15%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +A+ K+ F+ ++S+ELR+PL I G++ LL+ G++++ + +E I + Sbjct: 683 LDRANRSKDEFLMNLSHELRTPLNGIFGWSQLLRYD--GNISTDVRRGLEAIERCAHAQN 740 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSF 680 LVND+LD++ V +G L+ + D+ ++ + T ++++ + K++ D G L Sbjct: 741 QLVNDLLDMSLVISGKFSLSNEVV---DIREVIRLAAETFINKDKAKTKIVVDVGDLPLI 797 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------------------- 712 V D RL Q ++SN++ FS++G +V ++ Sbjct: 798 VCGDPVRLEQSIWNLVSNSIKFSNQGGSVTVRTSIPSQTGTTPLTLPPGVCGQSEEKLNL 857 Query: 713 ----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 A + + ++ + G I D VF RF N+ G+GLGLSIV + + Sbjct: 858 LRNHASNKNWCLVTISDQGCGITHDFLPHVFERFRQADNSSTRGHGGLGLGLSIVNNIVE 917 Query: 767 LHGGHVSISSSDEG 780 LH G++ S EG Sbjct: 918 LHNGYLFAFSEGEG 931 >gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 589 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 98/340 (28%), Positives = 153/340 (45%), Gaps = 31/340 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EG+ V +G I L NPAF L+ E+ G HI IA R+ +D F A Sbjct: 260 MGEGLMVTDANGLITLVNPAFLGLFSLNES--VEGRHIIEIA----RHPVLNDA---FKA 310 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEK 558 I+ S D+ + + TL + + + +PL + + F ++TD R E Sbjct: 311 IVASGDERVEKM--TLTMGEEKHVLTHWVPLVDNGELQGVVAVFHDITDLTRLE------ 362 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 I+ FV +VS+ELR+P+T I G+ + L + + + ++V I + S Sbjct: 363 --------NIRRDFVANVSHELRTPVTVIKGYAEALIDGAMETDPERARKFVGIILSHSE 414 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ D+L L+ ++AG M L +T+ + + + K I I Sbjct: 415 RLAALIGDLLTLSQLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQ 474 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S +AD RL Q+ +L NA+ ++ +G + AA VK+ G IP + Sbjct: 475 SVLADPGRLEQVLVNLLDNAIKYTPEGGAISFSAAVKENMVRIGVKDTGVGIPPKDLPRI 534 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V A G GLGLSIV+ + LHGG V + S Sbjct: 535 FERFYRVDTARSRDEGGTGLGLSIVKHIVQLHGGAVGVES 574 >gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 1127 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 2/242 (0%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q L D R ALT K L +A + K+ F+ ++S+ELR+PL +++ + LL Sbjct: 429 QAQLLETQRDDLERGASALTLKARELEQASQYKSDFLANMSHELRTPLNSLLILSKLLAD 488 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + G+L+ Q Y I +S LL L+NDILDL+ ++AG ++ + + L +V+Q Sbjct: 489 NPEGTLSEDQVNYARTIQSSGNDLLALINDILDLSKIEAGHIQARPEAVSMQRLTEDVRQ 548 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + D DRQRL QI +LSNA F+ G + +A+ Sbjct: 549 LFQPVADDRGLAFDIELDAGADLMETDRQRLEQILKNLLSNAFKFTESGKVKLSISAQPG 608 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I + K VF+ F RR G GLGLSI L GG + + Sbjct: 609 DRIAFAVSDTGIGISPEQQKGVFDAFQQADGTISRRYGGTGLGLSISRELARLLGGRIRL 668 Query: 775 SS 776 S Sbjct: 669 ES 670 >gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 173/365 (47%), Gaps = 35/365 (9%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 TV D+ T+ N + +D +++GV +G++ L NPA ++ E +P Sbjct: 104 TVITDITTEKNRARAI----LDSMADGVIALDREGKVLLVNPAVEDIFAIE----NPADQ 155 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNA 536 ++NI Y E LF A+ + + L++L+ V + PL ++ Sbjct: 156 VKNILGIIRNYELEQL---LFHAL-----KRNEPMVKVLKILTSEEPRVFRVHLTPLRSS 207 Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V R +T++ RK ++++ FV +VS+ELR+PLT+I GF L+T Sbjct: 208 DT-----KTEGIVAVLRDITDR----RKLEQMRTEFVANVSHELRTPLTSISGF---LET 255 Query: 597 SKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 G+L + +++E++S + L L+ND+L+L+ ++ N+ + + +L++ V Sbjct: 256 LLDGALEEPEIARRFLEHMSDETERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRV 315 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + E + + V L + D L+Q+ + ++ NA+ ++ + +KA Sbjct: 316 APVYEPRAREKGLTLMVTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARA 375 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + V + G IP + +F RF V A + G GLGLSIV+ + HGG + Sbjct: 376 SEQEMKVIVTDTGIGIPTESLARIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSL 435 Query: 773 SISSS 777 ++S+ Sbjct: 436 EVTST 440 >gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 417 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 163 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 204 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 205 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 261 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ +E+ +S+ K+ + +++I + D+ R Q+ S Sbjct: 262 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 318 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +GS + + F V++ G IPE+ KSVF RFV Q G Sbjct: 319 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 376 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EGV Sbjct: 377 TGLGLSICKSIVSQMGGEIGVEST-EGV 403 >gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 641 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 138/239 (57%), Gaps = 5/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E L++ D +K+ + VS+ELR+PLT+I G+ +L+ +G++N Q + ++ Sbjct: 396 LKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTINESQRKCLQVAD 455 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L L+ +LDL+ ++ G +++ + + D +++V + + E NI++K D Sbjct: 456 DNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKNIKLK--QD 513 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 K AD+ R+ Q+F+ ++ NA+ FS + S +I+ +NGD +VK+NG+ IP+ Sbjct: 514 IKDLLINADKDRITQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKDNGAGIPKK 573 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F++F V ++ + ++ G GLGL++ +S I HGG + + S +T + +P+ Sbjct: 574 DLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGSTFHIVLPA 632 >gi|17230375|ref|NP_486923.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17131977|dbj|BAB74582.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 1131 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 16/270 (5%) Query: 525 VLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +L+ + + LPN + + +VT+ + + L KN L + + +K+ F+ +S+EL++ Sbjct: 373 LLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKT 432 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PLT ++G + LL +LG LN +Q++Y I S L+++VNDILDL ++ G M+L Sbjct: 433 PLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTP 492 Query: 643 STI----VLNDLLNEVKQ--------SIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690 + V + L+E K S ++ + + L VAD RL Q+ Sbjct: 493 VPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQM 552 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748 +LSNA F+ + L+ + G F+V + G IPE +F +F + N Sbjct: 553 LVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLT 612 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL + + LHGG VS S + Sbjct: 613 RQFEGTGLGLVLTRALARLHGGDVSFLSRE 642 >gi|153004716|ref|YP_001379041.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028289|gb|ABS26057.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1111 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 14/266 (5%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 L D L + P+ A L V + A R +TE+ ++ +E K FVQ +S+EL Sbjct: 379 LLDRTLSSIVSPVAEADGRLAGVAI-----ALRDVTEQ----KRLEERKEEFVQVMSHEL 429 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 RSPLT++ G DL+ + G L KQ++Y+ S+ L LV+D+LDLA + G +++ Sbjct: 430 RSPLTSVTGALDLVLSGLAGQLEPKQARYLRMARESTEKLNGLVDDLLDLARLAKGKLQM 489 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 L++L+ + E + V + VAD R+ Q+ S +L+NA+ Sbjct: 490 EPEVTSLDELVRATVERYQPAAAERGQEVAVETPPASVRMVADPARVGQVLSNLLTNAIK 549 Query: 701 FSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-RGVG 755 F+ + S + ++ R G SV N G +I E + +F +F + + R +R RG G Sbjct: 550 FAPENSVIRVRLFRSPALPGMLGLSVWNAGEAISEPDLERIFEKFEQARSDRNRRVRGTG 609 Query: 756 LGLSIVESFINLHGGHVSISSSDEGV 781 LGLSI + HGG + S +GV Sbjct: 610 LGLSICRGIVEAHGGAIWAESPGDGV 635 >gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1006 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 5/248 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R + +L + L +A K+ F+ ++S+ELR+PL + + LL + G+L+ +Q Sbjct: 305 DLARTKLSLQHQAADLERASRYKSDFLANMSHELRTPLNSSLILAKLLADNPQGNLSEEQ 364 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ + I ++ LLNL++DILDL+ ++AG M+L + + L++EV +++ + Sbjct: 365 VKFAKTIQSAGNDLLNLISDILDLSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLARQKE 424 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R + I+ DRQRL Q+ +LSNA+ F+ +G + N +V + Sbjct: 425 LRFETQIAPDCPKIIFTDRQRLEQVLKNLLSNAIKFTEQGEVKLSVTPLSNQRLALAVSD 484 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I E+ + VF F S++HR + G GLGLSI + F L GG + + S + Sbjct: 485 TGIGISEEQQQIVFEAFRQADSSSHR-KHGGTGLGLSISKEFSRLLGGELRLESKPGDGS 543 Query: 783 TINCRIPS 790 T IP+ Sbjct: 544 TFTLIIPA 551 >gi|218780204|ref|YP_002431522.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761588|gb|ACL04054.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 917 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 6/255 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++T+ E+AL +N L + +++K+ + S++L+SPL I G+ L+K + + Sbjct: 658 MADITERRNLEKALESQNIKLERLNQLKSDLMAVTSHDLKSPLNVIAGYAGLIKETAGFA 717 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++Y++ I S ++ + ILD +++G + + + LN+LL E +++AT Sbjct: 718 SPETIAKYLDNIIFSVNRMVKFIGQILDAQKIESGKLDVEMEPLFLNELLQEHVENMATA 777 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + + RI G AD +R++Q+F +LSNA+ FS G V + D GD + Sbjct: 778 LQNGDKRIIFQDKGGRRKVNADPERMIQVFDNLLSNALKFSPDGGAVEVHYKDDGGDRVE 837 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVSIS 775 + + G IPE + +F+R+ +G + G GLGL I + +HGG +S+ Sbjct: 838 IFISDEGPGIPESDMEKIFDRYFQVKKQGTHSTERTYGSGLGLYISREILRMHGGSISVR 897 Query: 776 SSDEGVTTINCRIPS 790 + EG +P+ Sbjct: 898 NQAEGGCQFILSLPA 912 >gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 705 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 102/395 (25%), Positives = 181/395 (45%), Gaps = 53/395 (13%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E KY ++ ++ +EG+ PDGR +NPA + + SP I N+ Sbjct: 303 EAKYRSI-------FENAAEGICQTTPDGRYISANPALARILGYD----SPEDLIANLTD 351 Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 ++ Y + F A +I+ F+ + GT +S+ NA+ + Sbjct: 352 VSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISE-----------NARAV 400 Query: 540 L-----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 T ++T+ A AL EA A+ K++F+ ++S+ELR+PL II Sbjct: 401 FDAMGELVCYEGTVEDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 460 Query: 589 GFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 G++++L + +LG + +E I + LL L+NDILD++ ++AG M L Sbjct: 461 GYSEILSEEAEELGYEDIVPD--LERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFD 518 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ LL V + M +NN + V +G AD ++ QI +LSNA F++ G Sbjct: 519 ISSLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTNGK 578 Query: 707 TVI-------LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 + L ++++G + F V + G + ++ + +F F RR G GL Sbjct: 579 IKLEVSRVSSLPYSQESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGL 638 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GL+I + F + GG++ + S+ +T IP++ Sbjct: 639 GLAISDRFCQMMGGNIQVESTLGEGSTFKVVIPTR 673 >gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 611 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 VTD + E AL A +AD K F+ +S+ELR+PL IIGF++++ L+ Sbjct: 325 EVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMIVQEATLPLD 384 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y + I+ S LL++VN ILD++ +++G ++ ++L +A K Sbjct: 385 ATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKA 444 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +N I + L + D + QI ++SNA+ F+ +G V + A + + Sbjct: 445 RDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLR 504 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I ++ K + + F QRR G GLGLSIV++ + LH G + + S E Sbjct: 505 VMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEE 564 Query: 781 VTTINCRIP 789 TT+ +P Sbjct: 565 GTTVTVMLP 573 >gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1199 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 14/245 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LTE +AL+ A E K F+ ++S+E+R+P+ +IG T LL+ S LN +Q QYVE Sbjct: 679 RKLTE--QALQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQES---GLNPEQQQYVEV 733 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671 I AS +LL+++NDILD + ++AG ++L + ++ +LNEV ++T+ + + + Sbjct: 734 IRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALERH 793 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726 + + D RL QI +L NA+ F+ GS V L+A + G + V++ Sbjct: 794 LELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGS-VTLQARVEPGQDRRSMLLCQVRDT 852 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I E +++F+ F R+ G GLGL+I L G + + S TT Sbjct: 853 GIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQGTTF 912 Query: 785 NCRIP 789 IP Sbjct: 913 RLSIP 917 >gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] Length = 617 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 4/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ E KA KN F+ ++S+E R+PL IIGF+ + S +L+ ++ +++ IS Sbjct: 277 LSLAKEEAEKASRAKNVFLANMSHEFRTPLNAIIGFSSHIAQS--AALDPEERKHLSIIS 334 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+N +L ++ ++AG ++N T L DLL ++ + K E + +I Sbjct: 335 NSGNHLLTLINSVLAMSKIEAGKTEVNERTTNLQDLLADIHAMFSLKAAEKALSFDLICH 394 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + V D +L QI +++NA+ F+++G ++ D + +F +++ G + +D Sbjct: 395 PDLPAIVQVDDVKLWQILINLINNAIKFTARGGVKVIVEKNDTPEILFKIRDTGPGMAKD 454 Query: 734 MCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F+ FV A +G G GLGL+I S+I+L GG V + S +T IP K Sbjct: 455 EQAMIFDPFVQLATDQGINEGTGLGLAICRSYIHLMGGEVKVDSVRGKGSTFFFSIPLK 513 >gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] Length = 819 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 187/381 (49%), Gaps = 40/381 (10%) Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476 EN V+ DL L + + + +G AVF R+ L+NPA+ S++ E+ ++P Sbjct: 62 ENFQVRSDLRRAEQRLWT----SFETIEDGFAVFDASRRLVLANPAYVSIFDGLED-VAP 116 Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPN 535 G + C+ II + R+ +E+ + + +E +++ L N Sbjct: 117 GIGYAELLRLCAEE-----------GIIDTEGLSRQDWCAQMEMRWNGAQIEPAVVRLWN 165 Query: 536 AQTMLTF-------------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 ++ +N+TD+++ E+ LT A+ K++F+ ++S+ELR+ Sbjct: 166 GFSIKLVERRGEDGDIVSLCLNITDTIKREQELTLARTRAEAANRAKSAFLANMSHELRT 225 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ ++ ++LL S +L+ +Q+ YVE I S LL ++ND+LD + ++A ++L+ Sbjct: 226 PMNGVVAMSELLNES---ALDEEQALYVETIRKSGEALLVIINDVLDYSKMEAEKLQLHP 282 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701 + L L+++V E ++ + + D L S F+ D+ RL Q+ + +L NA+ F Sbjct: 283 APFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNLLGNAVKF 342 Query: 702 SSKGSTVI--LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755 + +G +I + ++G + I S+++ G I +M +F F R G G Sbjct: 343 TLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDERNRAFEGTG 402 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I + I+L GG + + S Sbjct: 403 LGLAITKQLIDLMGGEIWVDS 423 >gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 982 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 130/237 (54%), Gaps = 12/237 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VTD RA E +D++K++F+ ++S+E+R+PL +I+GF+D+L T L Sbjct: 743 TLTDVTDMHRARLKAEE-------SDQLKSAFLANMSHEIRTPLNSIVGFSDILVTEDLS 795 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + ++ + + I +++ LL L+NDILDL+ +++G ++ + + +LL E+ S Sbjct: 796 PEDKRE--FGKIIRSNNEQLLTLINDILDLSKLESGCVEFTETDFGVEELLGEIFSSYQP 853 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + E ++ + GK DRQRL+++ + ++NA+ ++S+GS + D G Sbjct: 854 RFRELPTKLVYVPKGKSIRLHQDRQRLIEVLTNFVNNAIKYTSEGSITLDYEKVDQG-VK 912 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+V + G +P + +FNRF +G GLGLSI + + G + + S+ Sbjct: 913 FTVTDTGVGMPPEALDKIFNRFEKLG--SMVKGTGLGLSICKMLADRMHGKIGVDST 967 >gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1290 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 15/268 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPL 584 N + + F + TD + A+ E+ +A L +A+ +K+ F+ VS+ELRSPL Sbjct: 879 NGRILKWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPL 938 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G+ LLK+ KL +L K +Q +E I ++ + L++D+LD++ + G + LN T Sbjct: 939 NPILGWAKLLKSRKLDAL--KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCT 996 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L + +++ +I I+ + D RL Q+ +L+NA+ F+ + Sbjct: 997 VDLVTTIEAALETVRLTAESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPE 1056 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 G + + R V++ G I D VF RF R+ G+GLGL+IV Sbjct: 1057 GGQIEVSLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVR 1116 Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789 + LHGG V ++S EG+ TT ++P Sbjct: 1117 HLVELHGGAVQVTSPGEGLGTTFTVKLP 1144 >gi|255013294|ref|ZP_05285420.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 547 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 136/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 322 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 378 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ +++G M+ Y+T+ L+++ +Q+ A ++ + +KVI SDG V Sbjct: 379 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPD---VKVIFESDGNDYCIV 435 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 436 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 494 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 495 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 542 >gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1126 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 136/632 (21%), Positives = 271/632 (42%), Gaps = 61/632 (9%) Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQKAIG--ESRK 242 N + + + + L V+ RD +++AN Y+ ++ G+ + G E Sbjct: 186 NEGDLLRTIMEDLPVAVFVRDDKHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPEEGEA 245 Query: 243 LFKE-----------EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291 +++E EI+ +M V+ + + ++Y V+ SF + Sbjct: 246 IYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTY----VVGSFSDIAP 301 Query: 292 AIDVSK---EITVNDQLTHT--YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346 + K E ++ H IL +L + + I D + + N F +WE+ L Sbjct: 302 LKEREKALIEAKKQEEALHRDIESILRSLPIGVLILDNDHRILSANDEFYSIWELPL--- 358 Query: 347 ATNP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYK------SSETHKDTWHLPNGQT 399 +P ++ +R N+L +T E I++ K E + W Sbjct: 359 -DDPFDGRHFVDVIRRNNELGRYDGTQT-AEEIYAFRKHLFETDEPEPIELGWAGGKSVI 416 Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQ--GETIDH----LSEGVAVFGP 452 SN R + + +++ + E + + T ++ GE + +S+G+A+ Sbjct: 417 FDSRRISNDR--ILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIV-Q 473 Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512 DG IK+SN A ++ + + G + C+ + D D + R+ Sbjct: 474 DGIIKMSNEAMAAILQIPPAYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQ 533 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572 + + + + + + F +VT+ E L AD K+ F Sbjct: 534 PISTVFHVGGERWVNMDAMVSEGQHWVALFTDVTELKSREEELRHLLSRAEAADRAKSEF 593 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + ++S+E+R+P+ ++G +LL + +L+++Q +V+ I S LL ++NDILD + Sbjct: 594 LANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSK 650 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIF 691 +DAG MKL + + + + +V +++ E NI + V + L + + D R QI Sbjct: 651 IDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIV 710 Query: 692 SKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNA 746 + ++ NA+ F+ +G + +AA G+ + S++ + G IP + +SVF++F Sbjct: 711 TNLVGNAVKFTERGHVFVDVGFEAAA-GGEIMASIRIEDTGIGIPAEKLESVFDKFSQVD 769 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I ++L GG++++ S Sbjct: 770 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 801 >gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 798 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQ 608 RAE L + E A+ K F+ ++S+ELR+PL IIGF++++ G L S + + Sbjct: 539 RAEEGLRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGPLGSDRYRE 598 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I S LLN+++DILD++ ++AG L I + +L + + + E Sbjct: 599 YTNDIHGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRARTLEKRQN 658 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727 + + + + AD++ + QI +LSNA F+ + L +R D GD + SV ++G Sbjct: 659 VNLHLPEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDLMVSVADSG 718 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP + V F V + Q G GLGL I +S I +HGG ++ S+ TT Sbjct: 719 IGIPRNKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLESTLGAGTTAT 778 Query: 786 CRIPS 790 P+ Sbjct: 779 MIFPA 783 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L+ N+ L +A K+ F+ ++S+ELR+PL I+ ++ + G LN +Q Sbjct: 963 AERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEGMLEQLRGPLNERQIA 1022 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I +S LL L+NDILDL+ ++AG M L I+++D+ I + + + Sbjct: 1023 ALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCAASMIFIKEQASKKQQK 1082 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNN 726 I +I + F AD++RL Q+ +L+NA+ F+ G + I+KA G +V + Sbjct: 1083 INLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIVKADASQGVLAITVADT 1142 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I ++ + +F F+ + Q G GLGL++V LHGG VS+ S+ Sbjct: 1143 GIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELHGGSVSLEST 1195 >gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 681 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 132/237 (55%), Gaps = 2/237 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + L++AD+IK+ F+ ++S+ELR+PL+ II +++LK G LNSKQ ++V I Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHVTNIL 489 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+N++LD++ ++AG MKL ++D+ E + + + NI I + + Sbjct: 490 NSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNIE 549 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 D +L QI ++SN++ F+ +G + + ++ +++NG I ++ Sbjct: 550 PSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKKED 609 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K +FN F V N++ + G GLGL + + + +HGG + + S+ T I IP Sbjct: 610 QKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIP 666 >gi|221641014|ref|YP_002527276.1| hypothetical protein RSKD131_2915 [Rhodobacter sphaeroides KD131] gi|221161795|gb|ACM02775.1| Hypothetical Protein RSKD131_2915 [Rhodobacter sphaeroides KD131] Length = 520 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L + L+ + + ++W G+++WAN +Y + K + R Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297 L R+ +A + +E G ++ + + + G A+ V Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255 Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357 E T+ D + + +L + +AIFDQ+R L N + ++L + LA PS LE Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315 Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415 LR +PE ++ +W+ I + K++ + + DTW LP+GQT VI +P G M Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYADTWSLPSGQTYRVIGRPHPNGALALM 375 Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 FE+++ ++ +Y +++ +D + + +AVF P G + ++N A+ +LW Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNTAYGALW 427 >gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 565 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 149/260 (57%), Gaps = 16/260 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ ++ ER L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ + Sbjct: 307 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 366 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ + I Sbjct: 367 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 419 Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713 +M + N R +V ++ + G + DR RL Q+ +++NAM F+S+GS T+ + Sbjct: 420 CLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 479 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 R + F VK+ G IP D VF RFV N +G GLGL+I I GG + Sbjct: 480 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---VKGTGLGLAICRVIIERLGGTI 536 Query: 773 SISSSDEGVTTINCRIPSKE 792 + + + + R+P +E Sbjct: 537 GVETREGKGSCFWFRLPVRE 556 >gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] Length = 821 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 125/240 (52%), Gaps = 3/240 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVE 611 R +E+ E +A K++F+ ++S+ELR+PL +IGF++++ G L +Y + Sbjct: 566 RKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEYAK 625 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+++NDILD+A ++AG M ++ I D ++ + I K E I + + Sbjct: 626 DILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDLVL 685 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 ++ L AD + + Q+ +LSNA+ F+ + T+ ++ + D F V + G IP Sbjct: 686 EAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTDIYFGVTDTGIGIP 745 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + F A R G GLGLS+ +SF +HGG + +SS TT+ +P Sbjct: 746 AEDLPRLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAFVLP 805 >gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 1198 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 129/236 (54%), Gaps = 13/236 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +RA+ L E L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L +Q + Sbjct: 469 LRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR 528 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHEN 665 Y E I AS++ LL L+NDILDL+ V+AG + + T+ ++ L E+ + +A H Sbjct: 529 YAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSIDATLQSLEELFKPMAGAKH-- 586 Query: 666 NIRIKVISD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + ++ D G + V+D QR+ QI +LSNA+ F+ +G + + D+G Sbjct: 587 ---LSLVFDRLPGAPETIVSDGQRVTQILRNLLSNAVKFTERGEVALSVSPADDGMLRID 643 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V+++G I D + +F F + Q G GLGLSI F L GG ++++S Sbjct: 644 VRDSGIGIAADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699 >gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii DSM 18315] Length = 794 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + + ++D +K++F+ ++S+E+R+PL I+GF++LL + ++ +Y+ Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLT---IAENEEERDEYIN 465 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS+++ +LL L+NDILD+A ++AG ++ S I +N LL++++QS K E +++ Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQVSF 524 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + ++D+ RL Q+ + ++NA+ F+ +GS +D+ +F VK+ G I Sbjct: 525 VEKLPYCIIMSDKNRLAQVMTNFINNAIKFTKEGSIRFGYEHKDD-KLLFYVKDTGCGIE 583 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + VFNRFV Q G GLGL+I + I GG + + S Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIIKKLGGEIGVES 626 >gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 1782 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 16/257 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A RA+ EK E L + K+ F+ ++S+ELR+PL +++ + LL ++ G+LN KQ+++ Sbjct: 1210 ARRAVEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNQQGNLNEKQTEFA 1269 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + T LLNL+NDILDL+ +++G + ++ + + + V+++ E + + Sbjct: 1270 RTIHGAGTDLLNLINDILDLSKIESGTVSIDIGDMSIPGMKQHVERTFRQVASEKGLAFE 1329 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN--------GDFI 720 + D L S D +RL QI +LSNA F+++G T+ ++ AR GD Sbjct: 1330 IDFDDSLPASIQTDEKRLQQIVLNLLSNAFKFTARGRVTLNVRPARHGWSPTHPVLGDLD 1389 Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 SV + G IPED K +F F R+ G GLGLSI L GG + + Sbjct: 1390 RALEISVSDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELQV 1449 Query: 775 SSSDEGVTTINCRIPSK 791 S +T +P K Sbjct: 1450 RSVPGEGSTFTLYVPMK 1466 >gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 810 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ +E+ +S+ K+ + +++I + D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +GS + + F V++ G IPE+ KSVF RFV Q G Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EG+ Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796 >gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 810 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ E+ +S++ K+ + +++I + L D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPLPECYLYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +G + + F V++ G IPE+ KS+F RFV Q G Sbjct: 712 FINNALKFTQQGCITLGYKQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EGV Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796 >gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 655 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 11/257 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++TD R E L E A++ K+ F+ ++S+E+R+PL I+ LL T+ SL Sbjct: 254 VDLTDRRRMEHDLRAAKEGAEAANQAKSEFLANMSHEVRTPLNGILSTLQLLGTT---SL 310 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++Q + + SS L L++DILDL ++AG + S L V + A Sbjct: 311 DAEQQECLFAAIKSSHRLTQLLSDILDLTKIEAGKLPCRESRFEFGQLRRAVLELFAKAA 370 Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716 + ++ + ISD V D RL QI ++ NA+ F+ +G + + A D Sbjct: 371 SDKDVGLVFTISDDMPRWLVGDEVRLRQILFNLVGNAVKFTLQGQVTVEAKALPSAGGDR 430 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F V + G IP+D + VF F + ++ + +G GLGLSIV + + GG +++ Sbjct: 431 LHVLFVVSDTGIGIPDDQLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLVRMLGGELAV 490 Query: 775 SSSDEGVTTINCRIPSK 791 ++ G TT+ C IP K Sbjct: 491 DGTEGGGTTMYCSIPLK 507 >gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R ER L E +A + A++ K++F+ ++S+ELR+PL IIG++++L Sbjct: 537 DITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHGL 596 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ ++ I ++ LL L+N++LD + ++G + L L++LL V I + Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLP 656 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI- 720 E R+ V ++ +LG+ D RL QI +LSNA F+ KG + + RD G+++ Sbjct: 657 ERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVE 716 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +++ G I E+ K +F F RR G GLGL+I F + GG +++ S+ Sbjct: 717 IDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTP 776 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 777 GQGSTFTVSLP 787 >gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 900 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 32/291 (10%) Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 +E+ GW L I + SLQG+ + + + T ++T+ A Sbjct: 216 DETYGWMLIQGQIMTL-----SLQGSAQ-----------------KVIGTLQDITEQKNA 253 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYV 610 E A + EA + A++ K+ F+ ++S+E+R+P+ I+G T L L+T L + Q Y+ Sbjct: 254 EAASRQAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLCLETD----LTADQRDYI 309 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 +S++ LLN++N+ILD + ++AG + LN + L+ E+ + + K E NI + Sbjct: 310 NMAHSSASALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEITRPLMPKFSEKNIELL 369 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNG 727 V I D RL Q+ + ++ NA+ F+ G V IL +FS+ ++G Sbjct: 370 VDIHPDVAIEIHGDPLRLRQVLTNLIGNALKFTLHGEVVLRILPVPDALHRLLFSLHDSG 429 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IPED K +F F + R+ G GLGL+I + GG + ++S Sbjct: 430 IGIPEDKQKVIFESFSQADNSTTRKYGGTGLGLTISSRLVEKMGGELHLTS 480 >gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 882 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 18/245 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ AE AL + +A +A+ K+ F+ ++S+E+R+P+ +IG T LL+ L LN Sbjct: 479 DVTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLE---LTELN 535 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +YV + + LL L+NDILD++ ++AG+M L L + +V + Sbjct: 536 AEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAR 595 Query: 664 ENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714 E +R++V + D LG D+ R QI +L NA+ F+ KG I L+ Sbjct: 596 EKALRLQVEVAPDVPDAVLG----DQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPV 651 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F +V++ G I + + +F FV R+ G GLGLSI + GG + Sbjct: 652 APPLFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSI 711 Query: 773 SISSS 777 SI S+ Sbjct: 712 SIEST 716 >gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 745 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 13/253 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD ERAL E + A+ K+ F+ S+E+R+PL I+G + LL ++ L Sbjct: 209 DVTDRTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQ---LT 265 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y + + +S L++L+N++LD + ++AG + L L L+ E+ + +A + Sbjct: 266 PEQTTYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQ 325 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718 + I D +L ++V D RL Q+ + NA+ F+SKG ++ + G + Sbjct: 326 GKQLEIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIA---EPGIWPNE 382 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I D + +F F R G GLGL+I + + GG +++ S Sbjct: 383 ISFQVRDTGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQS 442 Query: 777 SDEGVTTINCRIP 789 +T +P Sbjct: 443 QPGAGSTFEVSVP 455 >gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 625 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+ +K F VS+ELR+PLT I+G+ +L+ +++ +Q +Y++ + ++ LL Sbjct: 367 REAERVKEEFFALVSHELRTPLTAILGYVELVLGEDGATIDEEQHRYLQIVERNAQRLLR 426 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+L A V++G + L ++ L + E ++ + + I + L V Sbjct: 427 LVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTA-QIAPLVPCVG 485 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+ ++SNA+ F+ G V ++ + +G+ + + G +P + +F+RF Sbjct: 486 DRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEARIDISDTGVGVPAEEHARLFDRF 545 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SNA GVGLGL IV + + HGG + + S TT R+P Sbjct: 546 FRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLP 594 >gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 531 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 548 SVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +++++R L E N L++ D IK+ F+ + S+ELRSPLT +I FT+LL G LN Q Sbjct: 276 TLKSQREMLAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELNDLQ 335 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YV I+ S LL ++N LDL+ + AG L +++L+ ++ + + Sbjct: 336 RDYVHEINDSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFNNKG 395 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNG-DFIFSVK 724 I ++V + ADR + Q+ + +LSNA+ F++ G V++++ + D+G D I +V+ Sbjct: 396 ITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVIITVR 455 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +F F V G+G+GL++ + + LHGG + +SS + Sbjct: 456 DTGIGIDIRDQEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQNAGS 515 Query: 783 TINCRIPSKE 792 +P++E Sbjct: 516 IFTFTLPTEE 525 >gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 723 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 8/238 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A E E L + ++ + + V VS+ELR+PL+N+ G+ L+ ++ G + + + + + Sbjct: 470 AFNEMAEHLERLEKQRRAMVSDVSHELRTPLSNLRGW---LEAAQDGVADLDR-ERMGML 525 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + +L ++V+D+ DLA DAG ++L+ + L+ +V S ++ +++++ Sbjct: 526 VGETLLLQDIVDDLQDLALADAGKLRLSPEPVDAGALVEQVVDS--QRLRAAGAGLRLVA 583 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + VADR RL+Q+ +L NA+ + TV ++A R G+ + V + G IP + Sbjct: 584 EAGDVVVVADRTRLVQVVGNLLGNALRHTPAPGTVTVRARRSGGEAVVEVADTGVGIPAE 643 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+RF RR G GLGL+IV + + LHGG V++ S TT R+P Sbjct: 644 DLPHVFDRFWRADKSRNRRTGGSGLGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLP 701 >gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 681 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 132/237 (55%), Gaps = 2/237 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + L++AD+IK+ F+ ++S+ELR+PL+ II +++LK G LNSKQ +++ I Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHITNIL 489 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+N++LD++ ++AG MKL ++D+ E + + + NI I + + Sbjct: 490 NSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNIE 549 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 D +L QI ++SN++ F+ +G + + ++ +++NG I ++ Sbjct: 550 PSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKKED 609 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K +FN F V N++ + G GLGL + + + +HGG + + S+ T I IP Sbjct: 610 QKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIP 666 >gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 1037 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 7/240 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ + E L +++++K++F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 652 ITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 708 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH- 663 ++ +YV I ++T+LL L++DILDL+ ++AG M+ + LN ++ E++ + K+ Sbjct: 709 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLSP 768 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E N+ + ++R RL Q+ +++NA+ F+ +GS +D+ F V Sbjct: 769 EKNVTLSFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQEGSIRFGYKLQDDKMLYFYV 828 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 + G IPED +S+F RFV + Q G GLGLSI + + GG++ ++S EG T Sbjct: 829 SDTGCGIPEDKQESIFGRFVKLNNFAQ--GTGLGLSICQMLVQHMGGNIGLTSKPGEGST 886 >gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1039 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 11/244 (4%) Query: 542 FVNVTDSVRAER---ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +++TD +AE+ L E+ +A R A+ +K+ F+ +S+ELR+PL I+G+T LL Sbjct: 629 MLDITDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLL 688 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + K + ++ +E I ++ L L+ D+LD++ + G + L+ I L L+ Sbjct: 689 RNRKFDEATTARA--LETIERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAA 746 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 ++ I IK D ++G V D RL Q+ +LSNA+ F+SKG +V ++ R Sbjct: 747 IDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLER 806 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 V + G I + VF RF R G+GLGL+IV + LHGG V Sbjct: 807 IESSVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTV 866 Query: 773 SISS 776 S+ S Sbjct: 867 SVES 870 >gi|188992558|ref|YP_001904568.1| Putative two-component system sensor protein [Xanthomonas campestris pv. campestris str. B100] gi|167734318|emb|CAP52528.1| Putative two-component system sensor protein [Xanthomonas campestris pv. campestris] Length = 292 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ L +V+D+LDLA ++AG + ++ L DL ++ + + Sbjct: 104 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDASRTTLIFEDP 163 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + + FSV++ G IP ++ Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 223 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 224 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 267 >gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 893 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 142/256 (55%), Gaps = 28/256 (10%) Query: 545 VTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIGF 590 V + +R+E AL + E LR A++ K+ F+ ++S+E+R+P+ +IG+ Sbjct: 357 VAERIRSEEALRKSEERLRAAMKHAEHLAKAADSANKAKSEFLANMSHEIRTPMNAVIGY 416 Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 T+LL+ G + ++KQ Y++ I S LL ++NDILDL+ V++G +++ Y+ + + Sbjct: 417 TELLE----GLIHDAKQKSYLDAIKKGSRALLTIINDILDLSKVESGKLRIEYAPLDPHR 472 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-T 707 LL +V Q + ++ + + ++++ D +L S V D RL Q+ ++ NA+ F+ +G + Sbjct: 473 LLQDVAQIFSARISQKKLDLRIVLDDQLPHSLVLDEVRLRQVIFNLVGNAIKFTHEGYIS 532 Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + KA+ GD +V+++G I +D +FN F + + R+ G GLGL+I Sbjct: 533 LCAKASSIPGDDDHIELEIAVEDSGIGIAQDQQARIFNAFEQHEGQSNRQYGGTGLGLAI 592 Query: 761 VESFINLHGGHVSISS 776 + + + G + + S Sbjct: 593 SKKLVEMMNGEIGLKS 608 >gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 1049 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 13/237 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R E+ L + +++ +K +F+ ++S+E+R+PL I+GF+ +L ++ Sbjct: 666 ITERKRMEQELLSARDRAEESNRLKTAFLANMSHEIRTPLNAIVGFSAILAST---DEEQ 722 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +YV I ++ +LL L+ DILDL+ ++AG + ++ LN+L+ E + I K+ E Sbjct: 723 EKQEYVSIIENNNALLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMKVRE 782 Query: 665 NNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++++ + K S DR RL Q+ +L+NA F+ GS RD + F Sbjct: 783 G---VELLFEQKYEQCSVCTDRNRLSQVIINLLTNAAKFTQTGSIRFGYEMRDR-ELYFW 838 Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + GS IP D + VF RFV N ++G GLGLSI + + GG + + S + Sbjct: 839 VSDTGSGIPADKTEQVFERFVKLNTF---KQGTGLGLSICKMIVEHLGGRIGVESEE 892 >gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 757 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 507 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 565 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ +++G M + LN+LL+ + ++ M Sbjct: 566 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 625 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 626 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 684 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 685 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 742 Query: 781 VTTI 784 T I Sbjct: 743 STFI 746 >gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1075 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 105/435 (24%), Positives = 200/435 (45%), Gaps = 34/435 (7%) Query: 374 WKENIFSVYKSSETHKDTWH----LPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVD 424 W E+I + + KD L +G ++V ++ N + + + +++T ++ Sbjct: 367 WAEDIPCLEANLNQAKDVTRSRHCLKDGTLINVDISGRDILYNNQAARLVLIQDVTEKLK 426 Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484 E + + ++ G+ + ++ L+NP F ++ P ++ + Sbjct: 427 AENELQLTSSRLKALLQNMQAGILLEDAQRKVALANPVFCDMFDVP----VPPEELKGL- 481 Query: 485 ATCSRYYNESDGW----DLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTM 539 C+ + S G+ D F ++I R + G LEL+ V E IP+ + + Sbjct: 482 -DCAPFAELSKGFFTNSDTFISVINDILTARNIVLGEELELVDGRVYERDYIPVFSNEEY 540 Query: 540 L----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L + +V++ +A++ L + + ++ K F+ ++S+E+R+PL IIG LL Sbjct: 541 LGHLWQYRDVSNKKKAQKVLIQARKKAEESSLAKERFLANMSHEIRTPLNAIIGMQRLLS 600 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + SL +Q +Y++ I S+ LL ++NDILD++ ++AG ++L L L+ + Sbjct: 601 KT---SLEERQQRYLDAIGTSADNLLVIINDILDISKIEAGKLELENVGFDLCKLIRHLV 657 Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVIL 710 ++ K E I + D + V D RL QI +L+NA+ F+ G ST ++ Sbjct: 658 FTLGYKAEEKGIGLYANIDDNMHPIVLGDSVRLHQILLNLLNNAIKFTDVGKVIISTSLV 717 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 +A D F V + G I + ++VF F R+ G GLGL+I + L Sbjct: 718 EANPDTQTVCFEVSDTGRGIKAENIEAVFESFTQEDASITRKFGGSGLGLAIGRQLVELF 777 Query: 769 GGHVSISSSDEGVTT 783 GG ++++S TT Sbjct: 778 GGKLTVTSEYSKGTT 792 >gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis NCTC 9343] gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis NCTC 9343] Length = 543 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 151/261 (57%), Gaps = 18/261 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597 +L F ++T+ ++ ER L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ +T Sbjct: 285 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 344 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ + Sbjct: 345 DV----EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----ED 396 Query: 658 IATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712 I +M + N R +V ++ + G + DR RL Q+ +++NAM F+S+GS T+ + Sbjct: 397 ICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRL 456 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771 R + F VK+ G IP D VF RFV N +G GLGL+I I GG Sbjct: 457 TRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGT 513 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + + + + R+P +E Sbjct: 514 IGVETREGKGSCFWFRLPVRE 534 >gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] Length = 849 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 129/231 (55%), Gaps = 4/231 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLN 622 +A+ K+ F+ ++S+ELR+PL I GF++++ G L ++ Q YV I +S LL+ Sbjct: 593 EANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLLS 652 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD++ ++AG M+L ++ +++ + + + + E +I + V +L A Sbjct: 653 LINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTV-EGSELPEITA 711 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + L Q+ ++SNA+ F+ +G V L+ + + V + G I ED + V F Sbjct: 712 DPRALKQVILNLMSNAVKFTPEGGKVKLRGFQAADGVVLQVSDTGIGISEDDLQRVGRPF 771 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + + H + +G GLGL++ +S I +HGG + I S TT++ +P++ Sbjct: 772 EQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLPAE 822 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 9/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E +A+ K++F+ +S+ELR+PL IIG ++LL +S L+ + +Y I Sbjct: 350 LKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSS---GLSGELVEYARTIQ 406 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+NDILD++ +++G +K+ L +L V +++ + N+R + Sbjct: 407 TAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVLEVA 466 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730 ++ + V +D RL Q+ ++ NA+ F+S+G V+ ++ + +F V++ G I Sbjct: 467 SEIPAVVISDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEEEGRAELVFQVRDTGIGI 526 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + VF RF RR G GLGLSI + + L GG + + S + + RI Sbjct: 527 PREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCFTVRI 586 Query: 789 P 789 P Sbjct: 587 P 587 >gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 418 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 4/246 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+++ L E+N L +++ K +F+ +S+ELR+PL I+G++++L +G LN KQ +Y Sbjct: 162 RSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYSEVLLDGMMGELNPKQLEY 221 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S + LL ++ND+LDL+ ++AG ++L + L+N V I K + I + Sbjct: 222 CKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEILVNSVIGIIKEKASRHGIIL 281 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728 +G D R+ QI +LSNA+ F+ G V LK + D+ + + V + G Sbjct: 282 LTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGLKVSLHDDQELLIQVFDQGC 341 Query: 729 SIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E + +F F S+ + G GLGL++V + LHGG + + S ++ Sbjct: 342 GVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVLLHGGSIDVKSELGQGSSFF 401 Query: 786 CRIPSK 791 R+P + Sbjct: 402 IRLPYR 407 >gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 768 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ +++G M + LN+LL+ + ++ M Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753 Query: 781 VTTI 784 T I Sbjct: 754 STFI 757 >gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 768 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ +++G M + LN+LL+ + ++ M Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753 Query: 781 VTTI 784 T I Sbjct: 754 STFI 757 >gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1110 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 16/250 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + N L +A+E+K F+ + S+ELR+PL +IIGF+++L G L KQ +Y+ I Sbjct: 419 ALEKMNRELVRANELKGRFIANASHELRTPLHSIIGFSEILLQKTFGDLTEKQQRYLNTI 478 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL LVN+ILDLA +DAG +++Y T + +++EV I I + + Sbjct: 479 FGSAKHLLYLVNNILDLAKIDAGKAEISYQTFPVKSVIDEVLVVIRPLADRKMIVPETVV 538 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF--------- 721 + F AD+ + QI ++SNA+ F++ V I K D F + Sbjct: 539 HHDV-YFTADKIKFKQILYNLISNAIKFTADSGNVGIAIEKIISDKKTFPWVTESQEFLK 597 Query: 722 -SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 SV + G I PED + +F F G GLGLS+ + + +HGGH+++ Sbjct: 598 VSVWDTGIGIKPEDR-ERIFEEFEQIDSSKSTEGTGLGLSLTKKLVEIHGGHITVEGIYG 656 Query: 780 GVTTINCRIP 789 + N +P Sbjct: 657 QGSVFNVYMP 666 >gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46] gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 626 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 151/261 (57%), Gaps = 18/261 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597 +L F ++T+ ++ ER L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ +T Sbjct: 368 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 427 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ + Sbjct: 428 DV----EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----ED 479 Query: 658 IATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712 I +M + N R +V ++ + G + DR RL Q+ +++NAM F+S+GS T+ + Sbjct: 480 ICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRL 539 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771 R + F VK+ G IP D VF RFV N +G GLGL+I I GG Sbjct: 540 TRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---VKGTGLGLAICRVIIERLGGT 596 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + + + + R+P +E Sbjct: 597 IGVETREGKGSCFWFRLPVRE 617 >gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 768 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ +++G M + LN+LL+ + ++ M Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753 Query: 781 VTTI 784 T I Sbjct: 754 STFI 757 >gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 764 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L E AD K F+ +S+E+R+P+ I+G DL+ + + Q QY+E Sbjct: 371 ERELALAKERAEAADRAKTDFLAGMSHEIRTPMNTILGMADLMLETDPTPV---QRQYIE 427 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S +LL ++ND+LDL+ ++AG ++L + + D LN ++ +A + + + ++ Sbjct: 428 VFQSSGAMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIVAGRAAQKGLAFRI 487 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGS 728 +D F+ D RL Q+ ++ N + F+ G+ + +AA G F+V + G Sbjct: 488 EQADHAPRRFLGDPVRLRQVLVNLIDNGIKFTESGTVRLAVGQAADPPGRLTFAVTDTGI 547 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I + + +F RF R+ G GLGL+I + L GG + + S+ Sbjct: 548 GIAPESQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEIRLESA 598 >gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 842 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EA +A++ K+ F+ +S+E+R+P+ ++G +L + L + KQ +Y++ I +S Sbjct: 442 EKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASILADTPL---SEKQRKYLDTIVSSG 498 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LLN++NDILD + ++AG + L+ L++LL+ + + + H NI I ISDG Sbjct: 499 ESLLNIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRAHSKNIELICAISDGI 558 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPE 732 + + D RL QI + ++ NA+ F+ +GS I+ D N SV + G IP Sbjct: 559 PETLIGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDEDARNMKLKISVIDTGIGIPL 618 Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 + +F F S A R G GLGLSI +S + L GG + + S Sbjct: 619 GKQQKIFESF-SQADGSTTRTYGGTGLGLSISKSLVELMGGELGVES 664 >gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 375 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 121/210 (57%), Gaps = 2/210 (0%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KNSF+ ++S+ELR+PL ++IGF+DLL G LN+KQS+YV I S LL ++N++L Sbjct: 151 KNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPLNTKQSKYVNNILISGKNLLEIINNLL 210 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG L Y + + L+ +V+ S+ + I +++ D +G+ AD +L Sbjct: 211 DISRLEAGEKTLKYENVDIASLIGDVRMSLLSPASVKRITVELKIDPSVGNVRADITKLR 270 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI ++SNA+ F+ V++ A + G V + G + +D + +F F ++ Sbjct: 271 QILYNLVSNAIKFTPAKGKVVISACKKEGVLEVKVSDTGIGLSKDSHEKIFMPFTQADSS 330 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL IV +F++LHGG + + S Sbjct: 331 AARGYGGAGLGLYIVRNFVDLHGGKIWVDS 360 >gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] Length = 1425 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 15/244 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QY 609 ALT+ ++A++ K+ F+ +S+ELR+PLT+I GF +L++ L +QS Q Sbjct: 1175 ALTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQSALIRQG 1234 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E+++A L+ +ILDLA ++AG M + +VL+DL++EV + ++ + Sbjct: 1235 AEHLNA-------LLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLAL 1287 Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727 +SD + V DR +L QI S +LSNA+ F+ G + + A D F V + G Sbjct: 1288 TAAVSDAAPQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTG 1347 Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP + +F +F R Q G GLGLS+ + L GG +++ S+ +T Sbjct: 1348 PGIPASLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFT 1407 Query: 786 CRIP 789 +P Sbjct: 1408 LSLP 1411 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 14/234 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY----ISASSTI 619 +A K+ FV ++S+ELR+PL +I+GF S+LG L +Q + + I A+ Sbjct: 599 EASRSKSEFVANISHELRTPLQSILGF------SELGMLRGRQHEKLAAMFSDIHAAGQR 652 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 +L LVND+LD+A +++ + ++ I + DL+++V + + + +++ + L Sbjct: 653 MLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLI 712 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 + V D R Q+ +L+NA+ FS KGS + + A+ + DFI V + G IP ++ Sbjct: 713 AKV-DPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELEA 771 Query: 738 VFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 VF FV ++ R G GLGL+I I HGG ++ ++ G + +P+ Sbjct: 772 VFEAFVQSSQTRDGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLPT 825 >gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 565 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 149/260 (57%), Gaps = 16/260 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ ++ ER L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ + Sbjct: 307 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 366 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ + I Sbjct: 367 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 419 Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713 +M + N R +V ++ + G + DR RL Q+ +++NAM F+S+GS T+ + Sbjct: 420 CLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 479 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 R + F VK+ G IP D VF RFV N +G GLGL+I I GG + Sbjct: 480 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGTI 536 Query: 773 SISSSDEGVTTINCRIPSKE 792 + + + + R+P +E Sbjct: 537 GVETREGKGSCFWFRLPVRE 556 >gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 633 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 18/311 (5%) Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTMLT 541 +A + +R NE II++F+D KS L+G L +++ + +P+ Sbjct: 328 VAISITRPINE---------IISNFEDISKSALKGDLNRRAEADVGVDFRKIPSGLN--- 375 Query: 542 FVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++ DS++ L + N+ L+ D++K+ F+ +VS+ELR+PLT+I G+T L LG Sbjct: 376 --DILDSLQIYSNDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLG 433 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +N Q +E + ++ L LV+ +L ++ A I++ ++ + +++ Sbjct: 434 DINGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTIM 493 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + EN++ I+ L + AD RL+ + + I+ NA+ F+ G +IL D Sbjct: 494 LVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGVFDDENYLH 553 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V + G IP+++ ++F +F + ++ R + G GLGL I + ++ H G + I S Sbjct: 554 LTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIESEP 613 Query: 779 EGVTTINCRIP 789 TT++ R+P Sbjct: 614 HKGTTVHIRLP 624 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 47/367 (12%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 E ++ EG+ P+G +NPA + + S I+N+A + Y D Sbjct: 462 EIFENAVEGIYQTTPEGFFVTANPALARMLGYP-DLASLRDDIKNVA---TDVYVNRDRR 517 Query: 498 DLFA------AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 D F ++ +F+ E + GT +S++ S N + V D Sbjct: 518 DEFVDEIHQNGVVFNFESEIRRGDGTFAWISENA---SARRNQNGDVLYYEGTVED---- 570 Query: 552 ERALTEKNEALRKADEIK---------NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +TE +AL+ DEIK ++F+ +S+E+R+PL +IGF DLL T+KL Sbjct: 571 ---ITEHRKALQLTDEIKAAEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTTKL--- 624 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q ++VE +S++ LL+L+NDILDL+ ++AG ++L + VL DL+ V + A + Sbjct: 625 DDQQGRFVELAKSSASSLLHLINDILDLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQC 684 Query: 663 HENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717 + + V +D + + D +R+ Q+ + +NA+ F+ G V L+ R+ Sbjct: 685 RMTGLELNSSVATDVPQAA-IGDCERIRQVLVNLFANAVKFTETGG-VYLRVERERSVAS 742 Query: 718 --DFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 D I FSV++ G +P + +F F V + G GLGL+I + + L G Sbjct: 743 SHDAIARIRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQLVELMG 802 Query: 770 GHVSISS 776 G + + S Sbjct: 803 GEIGVES 809 >gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 657 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%) Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D + K ++ LE+ D L Y I P + + ++ D ++ + L E Sbjct: 242 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 299 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K+ F+ ++S+E+R+PL I+GF++++ ++ ++ +Y+E I +S +LL L+ Sbjct: 300 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 356 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ +++G ++++ + + L+ EV++ KM ++N+ +KVI DR Sbjct: 357 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 415 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ LSNA+ + KGS + + G ++ V + G I ++ +F RF Sbjct: 416 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 473 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 Q G GLGLSI +S + GG + ++S +T +P +E Sbjct: 474 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 520 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L +A +K+ F+ ++S+ELR+PL I+G T+ L+ G +N KQ + +E I SS+ Sbjct: 877 NQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINDKQFKALETIERSSS 936 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+NDILD+A ++AG +KL+ + I + L I + + I++++ L Sbjct: 937 HLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSSLVFIKQQALQKRIQVEIKIPLNLP 996 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIP 731 D +R+ Q+ +L+NA+ F+ + + L+ + + D +V + G I Sbjct: 997 DLFVDERRIRQVLINLLNNAVKFTPETGRISLEVTQVSPDISTVQNFLQIAVIDTGIGIM 1056 Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ +F F+ +A Q G GLGL++V+ + LHGG V ++S Sbjct: 1057 QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTS 1103 >gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 781 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 134/236 (56%), Gaps = 16/236 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E L E +A+ K+ F+ ++S+E+R+P+ I+G T LL+ SKL +Q V Sbjct: 390 TETKLKAAKEEAERANSAKSQFLANMSHEIRTPMNGIMGMTSLLEFSKL---TDEQIDIV 446 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669 + I SS LL ++NDILDL+ +D G ++L I + +L+NE +++ T + EN +++ Sbjct: 447 KMIETSSKHLLQIINDILDLSVMDVGKIELKPERINIFNLMNE-SRNLFTYLAENKGLKL 505 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724 ++I D L + D+ RL+Q+ S ++ NA+ F+ KG + ++ + +FSVK Sbjct: 506 EIIVDNNLPNEIILDKGRLMQVLSNLIGNAIKFTEKGKIQVSVDKVEDKENKVKLMFSVK 565 Query: 725 NNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I E+ +FN F +S + + Q G GLGL+I ++ + L GG +S+ S Sbjct: 566 DTGIGIKEEDIPRLFNYFTQLDISASKKFQ--GTGLGLAISKNIVELMGGEISVES 619 >gi|114706954|ref|ZP_01439853.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114537504|gb|EAU40629.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 490 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVND 626 + + + VS+ELR+PL IIGF+ +L+ G+LNS KQ +YV I +S LL++VND Sbjct: 230 LSEAMLATVSHELRTPLNAIIGFSGILENELFGALNSDKQREYVGLIQSSGRHLLSVVND 289 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILD++ ++AG +L+ +L++++ E + + + + I++ + DR+ Sbjct: 290 ILDVSKIEAGAYQLHCEHFLLDEVVEEASAMVRCQADQKGVSIEIACPPGGTTIHGDRRA 349 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L + +L+NA+ F+ G TV L R D +V + G IP D + FV + Sbjct: 350 LNHMLVNLLANAVKFTDAG-TVTLSWERAGRDLRLNVADTGIGIPADQIGKLGKPFVQAS 408 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+ V LHGG ++I S++ T + +P Sbjct: 409 CGMSRRYEGTGLGLAYVRGMCELHGGAMTIESTEGEGTRVMLDMP 453 >gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 738 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 6/254 (2%) Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 S+IP N + + ++T+ E L EA A K F+ +S+ELR+PL Sbjct: 319 SVIPDSNGEPEFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATMSHELRTPLN 378 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+G + LL+ +GSLN KQ++YV I +S LL L+NDILDL+ V+ G +L S + Sbjct: 379 AIMGLSQLLQQEIVGSLNEKQNEYVSCIYSSGEHLLALINDILDLSKVEEGKEELLLSPL 438 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 ++DL N ++ + E +++ D + +AD +R+ Q+ +L+NA+ F+ G Sbjct: 439 PVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLTNAIKFTPVG 498 Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 + ++ G F+V + G I + + +F F R R+ G GLGL++ Sbjct: 499 NVSLVVKKVPQG-ITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGTGLGLALTRK 557 Query: 764 FINLHGGHVSISSS 777 LHGG V+++S+ Sbjct: 558 LARLHGGDVTVTST 571 >gi|262381423|ref|ZP_06074561.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296600|gb|EEY84530.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 533 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 308 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 364 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ +++G M+ Y+T+ L+++ +Q+ A ++ +KVI SDG V Sbjct: 365 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 421 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 422 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 480 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 481 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528 >gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 1138 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + +T+K + +A + K+ F+ ++S+ELR+PL +I+ LLK +K +LN+ Q +Y Sbjct: 465 KARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKY 524 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL+L+N++LDLA +++G + L I ++ L ++ E +I Sbjct: 525 ATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINF 584 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 K D + S F+ D RL Q+ +LSNA F+ G + L NG+ F V+++G Sbjct: 585 KTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHVNGNIHFIVQDDGI 644 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + K +F F R+ G GLGLSI L GG +S+ S + +T Sbjct: 645 GIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTF 704 Query: 787 RIPSK 791 +P + Sbjct: 705 ILPYR 709 >gi|21107426|gb|AAM36144.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 468 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 221 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 280 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + Sbjct: 281 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFEDP 340 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + F V++ G IP ++ Sbjct: 341 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 400 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 401 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 444 >gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42] gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42] Length = 593 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V +V R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + + S Sbjct: 344 HVRGAVAVLRDMTEE----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASTE 398 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + + I S + LVND+LDLA +++G L+Y T+ L++ L ++ + + Sbjct: 399 EEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAK 458 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E + + V D ++ Q+F+ ++ NA+ + G +V + A + Sbjct: 459 EKGVSLTEDISVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDGLKIDI 518 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K++GS IPE+ +F RF A R G GLGL+IV++ + HGG +++ SS + Sbjct: 519 KDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKG 578 Query: 782 TTINCRIPSK 791 TT IP+K Sbjct: 579 TTFTFYIPTK 588 >gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] Length = 1302 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T SV+ + L + A + K+ F+ ++S+E+R+PL +IGF+DLL + LN Sbjct: 648 NITTSVKINKELKNAKKMADIASQAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PLN 704 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q+QY+ YI+ S LL+++NDILD + +++G M+L+ + D++++V I + Sbjct: 705 EIQTQYLNYINESGENLLSIINDILDFSKIESGKMELSIEKANVYDIVSQVINVILYQSQ 764 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + NI + + I G + D RL QI +L NA+ F+ +G + L N Sbjct: 765 KKNIELLLNIEPGLPETIWLDESRLKQILINLLGNAVKFTQEGEIELKVEKLSIESKNIT 824 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G IP++ K +FN F ++ G GLGL+I + +N G +S+ S Sbjct: 825 LRFSVRDTGIGIPKEKQKHIFNAFTQENSSISKKYGGTGLGLTISNNILNYMGSSLSLVS 884 >gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon] Length = 476 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +R + L NE L++ D +K+ FV VS+EL++PLT + +L+ + G + Sbjct: 230 DLIRTNKELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLEAA--GIATETK 287 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + ++ I + NLVND+LDL+ +++G MKL + ++ L+ L+ + +S+ E Sbjct: 288 REMLDIILRNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKG 347 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I++ V L S DR++L Q+ +L+NA+ F+ + + +KA NG V + Sbjct: 348 IKLNVKLPEGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDT 407 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G IP + + VF++F V + + G GLGL+I + I H GH+ Sbjct: 408 GIGIPPEDLEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHI 455 >gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 421 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 165/350 (47%), Gaps = 27/350 (7%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EGV V ++L NP+F SL+ + P + + R E+ F Sbjct: 90 MEEGVMVVDTHHNLRLVNPSFLSLFDL---KCDP------VGQSVLRTLRET----AFEE 136 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 IIT+ + +G +E SD +++ +P + F V R +T L Sbjct: 137 IITAALRTGQPQRGDVERTSDK-RHFAVHAVPVKE----FSGGPGIVAIIRDITR----L 187 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ +E++ FV +VS+ELR+PL+ G+ + L + S+ K Q++ E + S L Sbjct: 188 RQLEEVRREFVANVSHELRTPLSIFHGYLENLLDAP--SMPRKDQTEIFEILRKHSRRLN 245 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ D+L LA +++ K+ ++ L LL + + K+ + +++ + L Sbjct: 246 ALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQKLANKKLALQIEAHDDLPRIS 305 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD QRL Q+ +L NA+ ++ G + L+AA NG V+++G IP +F R Sbjct: 306 ADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQNGHVEVRVEDSGQGIPPADLPHIFER 365 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F A ++ G GLGLSIV+ I LHGG V+ S TTI +P Sbjct: 366 FYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESKYGKGTTIILHLP 415 >gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 556 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + ++K+ F+ +S+E+R+PLT I+G D+L+ +G L+ +Q + I Sbjct: 160 LARINAGLLRVTKLKDEFLASMSHEVRTPLTAILGLVDVLRAQLVGPLSEEQMGAINGIK 219 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 LL L+ND LD+A ++AG ++L+ + + ++D+ ++ IA +++ D Sbjct: 220 QGGQHLLALINDYLDIAKIEAGRLELDLTPVSVHDICQSLRPMIADMAKRAGLQLVYDLD 279 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPE 732 + +AD +RL QI +LSNA+ F+ G V L+ D G F+V + G I Sbjct: 280 PTVQVMLADARRLRQILINLLSNAIKFTPAGGKVGLEVRGDAERGAVRFTVWDTGIGISA 339 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F F + + + + G GLGL++V LHGG VS+ S Sbjct: 340 EDAARLFEPFQQIESERQKEVTGSGLGLALVAKLARLHGGSVSLES 385 >gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 682 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 544 NVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++T+ V AE L E E LR+ D++K++FV VS+ELR+P+T+I+G+T++L+ Sbjct: 423 DITERVEAEGRLVEALETERQAVERLREVDQVKDAFVSSVSHELRTPITSILGYTEMLED 482 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G L +Q V ++A+ST LL+L+ND+L L+ V + + L +++ Sbjct: 483 GVYGDLGREQLDAVRRVAANSTRLLSLINDLLTLSRVQEDEIGIVDRVFDLRSVVSAGTA 542 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 +A + ++ + + F+ DR L ++ + NA F+ +G + ++ Sbjct: 543 VVAPTLERRSLELTAELPDEPVPFLGDRDMLERVVINLAGNAAKFTPEGGRIGVRLLVGP 602 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 + + V + G IP + +F+RF ++ +R G GLGLSI + + HGG +S+ Sbjct: 603 EESVIEVSDTGIGIPHQEQERLFSRFFRSSLAQERAIPGSGLGLSIAHAIVEKHGGTMSV 662 Query: 775 SSSDEGVTTINCRIPS 790 S TT +P+ Sbjct: 663 DSEPGEGTTFRVHLPA 678 >gi|256840816|ref|ZP_05546324.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738088|gb|EEU51414.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 555 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 330 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 386 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ +++G M+ Y+T+ L+++ +Q+ A ++ +KVI SDG V Sbjct: 387 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 443 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 444 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 502 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 503 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 550 >gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 768 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ +++G M + LN+LL+ + ++ M Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753 Query: 781 VTTI 784 T I Sbjct: 754 STFI 757 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 4/258 (1%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T +VT AE L + N AL A K+ F+ +S+ELR+PL I+G ++ L Sbjct: 609 LATLRDVTTEKHAEEKLRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGV 668 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G LN +Q + I AS LL L+NDILDL+ V+AG + L + + ++ + Sbjct: 669 RGPLNERQLDALHNIEASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFV 728 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--N 716 + + ++R+ D ++ AD +RL Q+ +LSNA+ F+ V L D Sbjct: 729 KEQALKKSLRLSFHLDDQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEA 788 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774 +F V++ G I +D +F F R Q G GLGL++V +HGG V + Sbjct: 789 EQIVFVVEDTGIGIAQDDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMV 848 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + ++P ++ Sbjct: 849 ESELGKGSRFSIQLPYRQ 866 >gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 634 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 11/265 (4%) Query: 532 PLPNAQTMLTFVN---VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 P+P ++ V+ V +V R ++++ E R +K+ F+ VS+ELR+PLT+I Sbjct: 365 PVPIEMSVAPIVSGDEVHGAVTTFRDISQRTEVER----LKDEFISVVSHELRTPLTSIK 420 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G LL +G + + Q ++ ++ L LV+DILDL ++AG M L + Sbjct: 421 GSLSLLTNGVMGPVPAAQQPLLDMARRNAERLGELVDDILDLDRLEAGRMPLRPVETDAD 480 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 +L +V S+ + + V G + V D R+ Q+ + ++ NA+ FSS G Sbjct: 481 ELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRMNQVLTNLVGNAIKFSSPGCP 540 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765 V + +R + +V++ G IPED +VF RF H G R G GLGL I + Sbjct: 541 VTVSVSRAGDEVCLAVRDRGPGIPEDQHAAVFERF-RQVHEPGGARTGTGLGLPIARGIV 599 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + GG + ++S +T +P+ Sbjct: 600 DRSGGRIELTSEPGKGSTFTVVLPA 624 >gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 576 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 28/260 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R ER L EKN L A +K+ F+ +S+ELR+PL +IGF++ LK +G + Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S LL+L+NDILDL+ V+AG+M L + L +LL+ + + Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAA 410 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711 I++K+ ++ G DR++ QI +L+NA+ FS G V L Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAHAGVI 470 Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 + D F+ SV + G I + +F F S G R G GL Sbjct: 471 EGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529 Query: 757 GLSIVESFINLHGGHVSISS 776 GL++V+ LHGG V+++S Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549 >gi|332519219|ref|ZP_08395686.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045067|gb|EGI81260.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 507 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +SV + L KN L++ + KN+F+ + S+ELR PLT I+ F+D+L ++L + +Q Sbjct: 114 ESVINSQILELKNTYLKEKEAFKNTFIANFSHELRDPLTGILTFSDILSKTQL---DPQQ 170 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y++ +++SS+ L +++DILD++ ++AG ++L L +LL E+K + K + + Sbjct: 171 KDYIQILNSSSSFLKQMIDDILDISKIEAGKLELTIDPFNLKELLEEIKLNYIIKAQQKS 230 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-F 721 I D L V D +RL Q+ + +L NA+ F+ GS + L R I F Sbjct: 231 IDFNYKFDENLPEIVGGDSKRLRQVITNLLDNAIKFTHTGSVTLAVSLNQIRAQKASIHF 290 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +K+ G I E+ +F+ F +G GLGL+IV+ + L +++ S Sbjct: 291 EIKDTGIGIKEEHFNDIFSSFTQVNENDNYKGTGLGLAIVKHLVELSNSKINVES 345 >gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 160/339 (47%), Gaps = 29/339 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EG+ V G + L NPAF L+ ++ G I IA R+ + + F A Sbjct: 260 MGEGLMVSDAGGTVTLVNPAFLDLFGLTQS--VEGRQIIEIA----RF---PELHETFRA 310 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKN 559 +++S + +E +PL + + +LT + D +R A+ Sbjct: 311 VVSSRSEH---------------VEEMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDI 355 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 L++ + ++ FV +VS+ELR+P+T I G+ + L + + +++E I + S Sbjct: 356 SDLKRLEVVRRDFVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSER 415 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+L L+ +++G ++L + I L+ ++ + K I I + + Sbjct: 416 LADLIRDLLTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPP 475 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD RL Q+ ++ NA+ ++ G T+ L A +G SV + G IP +F Sbjct: 476 VLADPGRLEQVLINLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIF 535 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A G GLGLSIV+ I LHGG++++ S Sbjct: 536 ERFYRVDAARSRDEGGTGLGLSIVKHIIQLHGGNITVES 574 >gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 763 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 22/258 (8%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602 E+ + E+ + LR A+ K+ F+ ++S+ELR+PLT IIG + L +++ SL Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421 Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ QY++ I S LL ++N+IL+ + ++AG Y + L + Q+I K Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAG----KYVLSIQQFSLQKAAQNIHKK 477 Query: 662 MHEN------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N+++++ + + F AD +RL QI +L+NA+ F+ +G TVIL+ R+ Sbjct: 478 LRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWRE 537 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + IF V++ G I ++ +F F + + R G GLGL++ + + LHGG + Sbjct: 538 GNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIE 597 Query: 774 ISSSDEGVTTINCRIPSK 791 + S + + R+P++ Sbjct: 598 VESVLQEGSIFTVRLPNQ 615 >gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R ER L E +A + A++ K++F+ ++S+ELR+PL IIG++++L Sbjct: 537 DITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHGL 596 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ ++ I ++ LL L+N++LD + ++G + L L++L+ V I + Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDIIRPLLP 656 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI- 720 E R+ V ++ +LG+ D RL QI +LSNA F+ KG + + RD G+++ Sbjct: 657 ERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVE 716 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +++ G I E+ K +F F RR G GLGL+I F + GG +++ S+ Sbjct: 717 IDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTP 776 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 777 GQGSTFTVSLP 787 >gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 807 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 132/244 (54%), Gaps = 14/244 (5%) Query: 540 LTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 LT VN +T E L E E AD +K++F+ ++S+E+R+PL I+GF+ L+ + Sbjct: 560 LTSVNYDITQLKETECKLMEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSGLVSET 619 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + ++ +Y+ + A++ +LL L++DILDL+ ++AG I +N L ++ S Sbjct: 620 ED---PDERKEYISIVEANNNLLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTS 676 Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K+ ++++ D L + V+DR RL Q+ S ++N++ F+ KGS + D Sbjct: 677 LQMKLKPG---VELVFDRNLPEYHIVSDRNRLYQVLSNFVNNSVKFTFKGSIKVGYEKVD 733 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F V + G I D K+VF+RFV N+ G GLGLSI +S I GG + + Sbjct: 734 GMRLRFYVSDTGLGIAPDKQKAVFDRFVKLNSFVP---GTGLGLSICKSIIQQLGGTIGV 790 Query: 775 SSSD 778 S + Sbjct: 791 DSEE 794 >gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 573 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 8/258 (3%) Query: 526 LEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 L S+IP + + + ++T+ + E L A K+ F+ +S+ELR+ Sbjct: 302 LSVSVIPGSSGEPEYFLAIIDDITERKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRT 361 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+G + LL+ +GSLN KQ +Y+ I +S LL L+NDILDL+ V+AG +L Sbjct: 362 PLNAIMGLSQLLQQEIVGSLNEKQQEYINCIYSSGEHLLALINDILDLSKVEAGKEELFL 421 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 +++ D+ N+V ++ + +++ D + +AD +R+ Q+ +L+NA+ F+ Sbjct: 422 IPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFT 481 Query: 703 SKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 S G ++I+K + +FI S + G I + +F F R R+ G GLGL+ Sbjct: 482 SVGEVSLIVKRVPEGINFIIS--DTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLA 539 Query: 760 IVESFINLHGGHVSISSS 777 + LHGG V+++S+ Sbjct: 540 LTRKLARLHGGDVTVTST 557 >gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1288 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 137/246 (55%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ +N T+S+ ++ L E ++ +A+ K+ F+ ++S+E+R+PL +IGF+DLL + Sbjct: 636 VIVSALNNTESIAIQKELKEAMKSAEQANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKT 695 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LN+ Q QY+ YI+ S + L+ ++NDILD + V+AG M+L+ + + DL ++V Sbjct: 696 ---PLNATQRQYLNYINESGSSLMQIINDILDFSKVEAGKMELDEAFHSIYDLSDQVINV 752 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAAR 714 + + NI + + + G + + D R+ Q+ +L NA+ F+ +G + + +R Sbjct: 753 VMYQAQVKNIELLLDVQHGLPAAVLLDEARVKQVLVNLLGNAVKFTEEGEVELAVRQISR 812 Query: 715 DNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + + F V++ G IPE+ + +F+ F +R G GLGL+I S + G Sbjct: 813 TDKEIGLRFLVRDTGIGIPEEKKERIFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGS 872 Query: 771 HVSISS 776 + + S Sbjct: 873 KLYLES 878 >gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1177 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 20/253 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ + + E A+ KN+A+ A++ KN F+ +S+E+R+P+T IIG T+LL + L Sbjct: 530 DIEERKQHEAAILAKNQAV-AANQEKNRFLAALSHEMRTPMTAIIGMTELLNET---GLT 585 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+QY++ + +++ LL+LV+D++D++ VDAG +KL L +L+ + +++A K H Sbjct: 586 QQQAQYIKLMKSANEQLLSLVSDVMDISRVDAGRLKLETIPFNLLELVEKACETMAEKAH 645 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E N+ + +S + D RL Q+ + ++ NA+ F+ KG V+ GD Sbjct: 646 EKNLELACSVSPKTPIHLLGDPYRLKQVLNNLMQNAVKFTEKGEVVVTVRDAAEGDKKDG 705 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSN-----AHRGQRRGVGLGLSIVESFINLHGG 770 F V + G IP S+F+ + H G G G+GLSI + + G Sbjct: 706 QAVIEFCVSDTGIGIPSKRLASLFDHMAKDNDVDFHHYG---GTGVGLSISRKLVEMMKG 762 Query: 771 HVSISSSDEGVTT 783 ++SS E +T Sbjct: 763 DFTVSSKLEQGST 775 >gi|209808886|ref|YP_002264424.1| membrane associated response regulator,histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010448|emb|CAQ80807.1| membrane associated response regulator,histidine kinase [Aliivibrio salmonicida LFI1238] Length = 818 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 11/247 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++L V V S +R L +N+ + KA++ K+SF+ ++S+E+R+PL IIG T++L S Sbjct: 293 SVLIAVVVMTSRLEKRILRSQNQEI-KANKAKSSFLANMSHEIRTPLNGIIGMTEILSVS 351 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L ++ Q Y+ I+ASS LL L+ND+LDL+ +++G +++N + + +++ + Sbjct: 352 TLTAI---QKDYLATINASSQTLLMLINDVLDLSKIESGNIEVNTHSCKIKEVIFDTAAL 408 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 IA K + + IK+I ++V AD Q++ Q+ + SNA+ F+ GS + + Sbjct: 409 IAPKAQQKGVNIKIIMSENFPTYVKADEQKIRQVLMNLASNAIKFTEAGSISFELSLIEE 468 Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D + FSVK+ G I E + VF F + G GLGL+I I + G Sbjct: 469 TDTSYRYFFSVKDTGLGIEESKHEQVFEEFKQEDDDTSKNYGGTGLGLAISSKMIKMMGN 528 Query: 771 HVSISSS 777 + + SS Sbjct: 529 EIKLKSS 535 >gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 413 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 27/289 (9%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKADE---I 568 G + S+ EY + P+ M ++F + D R + +EA ++A+E + Sbjct: 129 GGIHRFSEQETEYRL-PVQGHDEMASLAISFNQMAD--RIGESFVRLDEARKRAEEASRM 185 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL IIGF++L++ + + + + + I SS LL LVN IL Sbjct: 186 KSEFLANMSHELRTPLNGIIGFSELIRDE---AADDETRENADIIEKSSRHLLELVNSIL 242 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682 D+A ++AG M L + L L+ E A +H + + K I SD + A Sbjct: 243 DIAKIEAGAMTLAVQDVKLAPLVAE-----AASVHHSAAQAKGITLSSQVSDNCPETIRA 297 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QI +LSNA+ F+ KG V L + G IF V + G+ IPE M ++F +F Sbjct: 298 DPLRLRQIIHNLLSNAVKFTEKGE-VSLSVELEPGHLIFRVSDTGAGIPEGMLHAIFEKF 356 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + G GLGL++ + L GG + + S+ T + +P Sbjct: 357 RQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLP 405 >gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 609 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 30/261 (11%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N +L + +++KN F+ +S+ELR+PL +I+GF+D+L ++ +LN KQ +Y+ IS Sbjct: 293 LARANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVLGSAD--NLNDKQKRYLGNIS 350 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL L+NDILDLA +++G M+L+ + +++ ++ SI+ NI + + Sbjct: 351 SSGQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMCS 410 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------------AARDN 716 + D ++ QI + +LSNA+ F+ G V ++ AARD Sbjct: 411 PDMPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARDL 470 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-------RGVGLGLSIVESFINLH 768 SV + G IP + +F +F S+A GQ G GLGLSIV+ L Sbjct: 471 --VQISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLL 528 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG V + S +T RIP Sbjct: 529 GGEVKVESEFGKGSTFVVRIP 549 >gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 456 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 9/245 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A+ K+ F+ +S+ELR+PL +IGFTD+L + G + Q++++ Y+ Sbjct: 202 LQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLSRIYGEVTDIQAEFLGYVL 261 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVIS 673 SS LL+L+NDILDL+ ++A M+L S + + L + + + ++ IR+ + ++ Sbjct: 262 QSSRHLLSLINDILDLSKIEADRMELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVA 321 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728 + AD ++L QI +L+NA+ F+ G +V L A G + +V++ G Sbjct: 322 PAVPPTITADERKLKQIVFNLLANAVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGI 381 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 + + +F+ FV RR G GLGL + + LHGG + S G+ +T Sbjct: 382 GLAAGDLERIFDPFVQADGSATRRYEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFR 441 Query: 786 CRIPS 790 IP Sbjct: 442 VIIPP 446 >gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 859 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 142/246 (57%), Gaps = 12/246 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + +E L + A +A+ K+ F+ ++S+E+R+P+ I+G TDL + + L Sbjct: 476 DITKRMESEDELKKAKIAAEEANIEKSRFLANMSHEIRTPINGIMGMTDL---TLMTELT 532 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +Y+ + ASS+ LL+++NDILD++ +++G KL+ L + ++++ ++I+ + Sbjct: 533 NEQREYLNMVKASSSHLLDIINDILDISKIESGKFKLDLVPFNLEERISKMVKNISVLAY 592 Query: 664 ENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 + I + D + G+ + D +L QI +LSNA+ F+ +G+ ++ ++ +D Sbjct: 593 KKFIEVMYFIDPNISEGNIIGDPSKLDQILMNLLSNAIKFTDRGNIIVCAKKVEGPKDKI 652 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 FSV + G IPED +F F + +++ + G GLGLSI + +N+ G + ++ Sbjct: 653 KIQFSVSDTGIGIPEDKMDKLFKTFSQIDDSYTKKYGGTGLGLSISKHLVNMMNGDIWVT 712 Query: 776 SS-DEG 780 S +EG Sbjct: 713 SKHNEG 718 >gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 731 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 22/250 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L N L A K +F+ ++S+ELR+PL I+GF+DLL G L +KQ++Y + Sbjct: 459 RELQIANGHLADASRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFGPLTAKQARYANH 518 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL L+ND+LDL+ V+AG + L L++ L I + I Sbjct: 519 IQTSGRHLLALINDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQPVADAKRLTIVPD 578 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------------- 713 D + AD R QI +LSNA+ F+ +G T+ + A+ Sbjct: 579 IDTAPITLTADPVRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRESGVEAPPHPIPTTL 638 Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 +GDF+ +V + G I + +F RF + Q +G GLGL++ + + LHGG Sbjct: 639 HHSGDFVEIAVTDTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLGLALTKQLVELHGG 698 Query: 771 HVSISSSDEG 780 ++++S+ G Sbjct: 699 TITVTSAGPG 708 >gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 981 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 32/269 (11%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L N+ L A K+ F+ ++S+E R+PL +IIGF+D+L+ G L KQ+++ + Sbjct: 703 RTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSDILRDPAFGPLTEKQARFAQN 762 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL+L+ND+LDL+ V+AG + L+ + + + + + + Sbjct: 763 IQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAIRAALAEVQPQADLKQLELTPQ 822 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAAR-DNGD---------- 718 +D + +AD R QI +LSNA+ F+ +G + + +AAR + GD Sbjct: 823 TDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVTVRRAARQEEGDTSQGAAGQGL 882 Query: 719 ---------------FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIV 761 +V + G I D +F F +A +R +G GLGL++ Sbjct: 883 EILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEFTRLDAAIAKRTKGTGLGLALT 942 Query: 762 ESFINLHGGHVSISSSDEGV-TTINCRIP 789 + + LHGG ++ S EG +T R+P Sbjct: 943 KRLVELHGGEIAAVSDGEGRGSTFTVRLP 971 >gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 587 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 27/338 (7%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 ++EGV G++ L+NP RSL K E L+ G I S + + LF Sbjct: 260 MNEGVMAIDGQGKVILANPQARSLLKLSETDLT-GKEI-------SSLLPQEEMNQLFMD 311 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 +I S + Q + VL I PL V + V TE + Sbjct: 312 VIASSEVHSAEYQ----VFGGKVLSLQIAPLYRNNQTWGAVGILQDV------TE----V 357 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++++ FV +VS+ELR+P+T+I GF + L L Q +Y+ I + L Sbjct: 358 RHLEQMRRDFVANVSHELRTPMTSIQGFVEAL-LDGLAEDKESQDRYLNVILDETVRLNR 416 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV+D+LDL+ ++ G + TI L L +V + ++ + + + + + + + Sbjct: 417 LVSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTG 476 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 +R R+ Q+ +L NA+ F+ G + L +A+D GD + V + G IP + ++ R Sbjct: 477 NRDRIQQVLINLLGNAISFTPPGGKITL-SAKDVGDKVEVQVTDTGMGIPPEEQDKIWER 535 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V A G GLGLSIV+ ++ HGG V + S+ Sbjct: 536 FHKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLEST 573 >gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 936 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 743 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 802 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911 >gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 576 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 3/217 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ + +K+ FV +S+ELR+PL++I+G+ +LL+ + G L ++Q+QY++ ++ LL Sbjct: 343 REFERLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAEQTQYLDVAERNAQRLLR 402 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LV D+L A V+AG + + + L +L Q+ ++R++V+ D L + V Sbjct: 403 LVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMDESLSTVVR 462 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q +LSNA+ FS G V L + +V++ G IP+ + R Sbjct: 463 GDATRLGQAVDNLLSNAVKFSPAGGQVTLSLVAHDERATITVRDTGIGIPDTELDQLTTR 522 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F S A G+GLGL+I ++ + H G + ++S Sbjct: 523 FFRASTATSASVPGIGLGLAITKAIVVAHRGRLDVTS 559 >gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 1149 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V+A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+ +Q + Sbjct: 461 VQAQEELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSDEQVK 520 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + E I ++ LLNL+NDILD+A V+AG +++ + + L+ ++ + Sbjct: 521 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTQVERLVEGLRGMFEPLAGHKGLA 580 Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V ++ ++ + DRQRL QI +LSNA+ F+ +G + + +F+V++ G Sbjct: 581 FEVTAEAQVPATLFTDRQRLEQILKNLLSNAIKFTERGKVSLNIGYQPGTGIVFAVRDTG 640 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I D +++F F RR G GLGLSI +L GG +++ SS Sbjct: 641 IGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSS 692 >gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 936 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 743 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 802 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911 >gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1068 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 130/251 (51%), Gaps = 9/251 (3%) Query: 549 VRAERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R + L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + LL +K G+L Sbjct: 351 ARKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTL 410 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+V +L ++++ Sbjct: 411 SAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLA 470 Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + +++ + G V D QRL QI +L+NA+ F+ G + A G F Sbjct: 471 RQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVGLTVQAHAPGRVRF 530 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I + + +F F +RR G GLGLSI GG +S+ S Sbjct: 531 AVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPG 590 Query: 780 GVTTINCRIPS 790 + +P+ Sbjct: 591 RGSCFTLELPT 601 >gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 497 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 136/247 (55%), Gaps = 16/247 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E + A+ K+ F+ ++S+E+R+P+ ++GF DLL+++ + + S Y++ I+ Sbjct: 169 LKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST---ITDPQASSYIKAIA 225 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ ++AG ++L+Y + + ++NE++ K E NI+++V I+ Sbjct: 226 SSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKTKEKNIKLQVYIA 285 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKN 725 S + D RL QI I+ N++ F+ GS I+ + ++ + ++ + Sbjct: 286 PEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSINLKIAITD 345 Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I PED K +F+ F + + R+ G GLGL+I E ++L GG + + S + Sbjct: 346 TGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESQINQGS 404 Query: 783 TINCRIP 789 T P Sbjct: 405 TFTFDFP 411 >gi|150008008|ref|YP_001302751.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936432|gb|ABR43129.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 508 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 283 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 339 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ +++G M+ Y+T+ L+++ +Q+ A ++ +KVI SDG V Sbjct: 340 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 396 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 397 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 455 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 456 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503 >gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 635 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%) Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D + K ++ LE+ D L Y I P + + ++ D ++ + L E Sbjct: 220 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 277 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K+ F+ ++S+E+R+PL I+GF++++ ++ ++ +Y+E I +S +LL L+ Sbjct: 278 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 334 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ +++G ++++ + + L+ EV++ KM ++N+ +KVI DR Sbjct: 335 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 393 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ LSNA+ + KGS + + G ++ V + G I ++ +F RF Sbjct: 394 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 451 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 Q G GLGLSI +S + GG + ++S +T +P +E Sbjct: 452 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 498 >gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 400 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 146/272 (53%), Gaps = 21/272 (7%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 EL+ D VL E I PL + +++ AE+ ++ + L+ A D + Sbjct: 123 ELMLDGVLHHYENRIFPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 182 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + + +++QY E I +S +LLNL NDIL Sbjct: 183 KSAFLANMSHEIRTPLNAIVGFSKLITYA---TSAEEKNQYSEIIERNSEMLLNLFNDIL 239 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 DLA+++A +K N I L D+ +++Q K +N +++ ++ D + + D R+ Sbjct: 240 DLASLEADSLKFNIRPIKLIDICLQLEQQFWHKT-QNGVKL-ILDDVDTDMYTSGDWNRI 297 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 +QI S +LSNA F+ KG I R+ DF+ F VK++G IP ++F RF Sbjct: 298 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVD 355 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 356 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 385 >gi|209966659|ref|YP_002299574.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] gi|209960125|gb|ACJ00762.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] Length = 710 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 7/225 (3%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDL 630 F+ V +ELR+PL IIGF+++L+ LGSL N++ Y + I LL L ND++DL Sbjct: 474 FLSAVGHELRTPLNAIIGFSEILRDELLGSLGNNRYRDYAQDIHDGGLHLLRLTNDLVDL 533 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690 A ++AG + L S + L++ + AT+ + + +AD RL QI Sbjct: 534 ARIEAGQLDLRESWTDVQGLVDRCLRLGATRAAGLGVTLGADIRPPGLRVLADEARLRQI 593 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 + +L NA+ S +GS V ++A+ + G F V + G + E ++ F G+ Sbjct: 594 LANLLDNAIRHSERGSHVQVRASGEGGIFTLQVADQGVGMTEKEVRAALRPFGEAPAAGE 653 Query: 751 RRGV------GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL +V ++ HGGH++I+S TT+ +P Sbjct: 654 AEGTARQTAPGLGLPLVRGYVEAHGGHLAIASDPGAGTTVTVTLP 698 >gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. ORS278] gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Sbjct: 243 EQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 300 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + Sbjct: 301 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRASSR 360 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + K+ AD + + Q+ +LSNA+ F+ +G + LKA +G SVK Sbjct: 361 GITIHEVFEQKMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVK 420 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS IPE+ V F SN+ + +G GLGL I ++ I +HGG ++ S Sbjct: 421 DTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKS 474 >gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s] Length = 607 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E + A+ K+ F+ ++S+E+R+P+ ++GF DLL+++ + + S Y++ I+ Sbjct: 301 LKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST---ITDPQASSYIKAIA 357 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ ++AG ++L+Y + + ++NE++ K E NI ++V I+ Sbjct: 358 SSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKAKEKNIELQVYIA 417 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKN 725 S + D RL QI I+ N++ F+ GS I+ + ++ + ++ + Sbjct: 418 PEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSINLKIAITD 477 Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGV 781 G I PED K +F+ F + + R+ G GLGL+I E ++L GG + + S ++G Sbjct: 478 TGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESQINQGS 536 Query: 782 T 782 T Sbjct: 537 T 537 >gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1056 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L L A K+ F+ ++S+ELR+PL + + + LL +K G+L+ Q +Y Sbjct: 348 AQGQLVRNGNELATASRYKSEFLANMSHELRTPLNSALILSKLLADNKDGTLSPDQVKYA 407 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S+ LL L+NDILDL+ ++AG ++L T+ + +L ++ + + + ++ Sbjct: 408 QAILSSNNDLLALINDILDLSKIEAGHVELADETVATSSVLQRLRDTFEPLARQKGLTLE 467 Query: 671 VISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + +D G V D QRL QI +L+NA+ F+ +G+ + A G +F V + G Sbjct: 468 IGADAGAPTQLVVDNQRLQQILKNLLANAIKFTERGTVSLAIQAGAPGRVLFKVNDTGIG 527 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + + +F F +RR G GLGLSI GG +S+ S + Sbjct: 528 IAREQTEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 587 Query: 788 IPS 790 +P+ Sbjct: 588 VPT 590 >gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 573 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 8/258 (3%) Query: 526 LEYSIIP--LPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 L S+IP + L ++ +TD + E L A K+ F+ +S+ELR+ Sbjct: 302 LSVSVIPGSYGEPEYFLAIIDDITDRKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRT 361 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+G + LL+ +GSLN KQ +Y+ I +S LL L+NDILDL+ V+AG +L Sbjct: 362 PLNAIMGLSQLLQQEIVGSLNEKQQEYISCIYSSGEHLLALINDILDLSKVEAGKEELFL 421 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 +++ D+ N+V ++ + +++ D + +AD +R+ Q+ +L+NA+ F+ Sbjct: 422 IPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRRIKQMLLNLLTNAIKFT 481 Query: 703 SKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 S G ++ +K + +FI S + G I + +F F R R+ G GLGL+ Sbjct: 482 SVGEVSLTVKRVPEGINFIIS--DTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLA 539 Query: 760 IVESFINLHGGHVSISSS 777 + LHGG V+++S+ Sbjct: 540 LTRKLARLHGGDVTVTST 557 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N+ L +A +K+ F+ ++S+ELR+PL I+G T+ L G +N +Q + ++ + S+ Sbjct: 1365 RNQELIRATRLKDEFLANMSHELRTPLNAILGMTEGLHEEVFGPVNDRQLKALQTVERSA 1424 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LL L+NDILD+A +++G ++L S + L I + + I++ V L Sbjct: 1425 SHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNL 1484 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARD-NGD---FIFSVKNNGSS 729 + D +R+ Q+ +L+NA+ F+ +G + VIL R+ G+ FSV++ G Sbjct: 1485 PDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIG 1544 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + K +F F + +A Q +G GLGL++ + + LHGG V ++S Sbjct: 1545 ISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTS 1593 >gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1066 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 11/244 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +T E R+ D +K +F +VS+ELR+PLT I+G +LG+ + Sbjct: 132 ANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGSL----AKRLGAAETPPEARR 187 Query: 611 EY--ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +Y + ++ +LL V D+LD+A +DAG M+L Y+ + + + E I Sbjct: 188 DYRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGIS 247 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V + L + V D +++ +I +LSNA F+ G V ++ AR +G F +V ++G Sbjct: 248 LTVDAPRALTAEV-DVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTDGHFRLTVADDGP 306 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP+D + VF RF G+ R G GLGL+I + F LHGG V+++++ G Sbjct: 307 GIPDDQKQVVFERF-RQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFT 365 Query: 786 CRIP 789 +P Sbjct: 366 VTLP 369 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 29/274 (10%) Query: 542 FVNVTDSV----RAERALTEKNEALRKADE--------------IKNSFVQHVSYELRSP 583 F++V + + RAE AL + L +A E K+SF+ ++S+E+R+P Sbjct: 651 FISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMSHEIRTP 710 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L ++G LLKT+ +L+ +Q QY + S L L+ DILDL+ ++A + L+ + Sbjct: 711 LNGLMGMMQLLKTT---ALDDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAARLTLHVA 767 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702 L D+ + ++ A E + + +++ L + + D RL QI + NAM F+ Sbjct: 768 PFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLAGNAMKFT 827 Query: 703 SKGSTVI-----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 G + L +F+V + G IP+D +V F V + + ++G G Sbjct: 828 VAGEVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTYTRDQQGAG 887 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL+I L GG ++I S TT+ +P Sbjct: 888 LGLAICRELTRLMGGSLTIESELGVGTTVWLMLP 921 >gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC 43183] Length = 906 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 132/246 (53%), Gaps = 7/246 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R +R L E +D++K++F+ ++S+E+R+PL I+GF+ ++ S + Sbjct: 488 DITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDA 544 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + + A++ LL L+N+ILDL+ ++AGI++ + + L+ L E+ ++ + Sbjct: 545 EERQNYYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCP 604 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E + SD ++ + D+ R+ Q+ S ++ NA F+++GS V R + F V Sbjct: 605 EGVELVYEASDEEI-TVEGDKNRIFQVISNLIGNAFKFTTRGS-VGYGYRRKGNEIEFYV 662 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G I D VF RFV Q G GLGLSI ++ I GG +S+ S TT Sbjct: 663 SDTGIGIQTDKLAKVFERFVKVNTFAQ--GTGLGLSICKTIIERLGGTISVCSEVGKGTT 720 Query: 784 INCRIP 789 +P Sbjct: 721 FTFTLP 726 >gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 779 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 22/294 (7%) Query: 498 DLFAA-----IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRA 551 DLFA + T+ DDER + SD +L ++ L A ++ F + V Sbjct: 158 DLFAQPMLVRVRTAMDDERHLADAS----SDRLLLWASGILFAALAIVAFWIFRPMEVAI 213 Query: 552 ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 RA E E+L KA D K+ F+ ++S+E+R+P+ ++G +LL + L +Q Sbjct: 214 RRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---DLTPRQKT 270 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + + I S LL ++NDILD + ++AG + L+ + L++ + +V ++ ++ E N+ Sbjct: 271 FTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLE 330 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVK 724 + V D +L + V D R QI + +L NA+ F+ KG +I D + V+ Sbjct: 331 LIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEKGHVLIDVGGEIVNDVVQLKIRVE 390 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IP + ++VF +F RR G GLGL+I ++L G + + S Sbjct: 391 DTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 444 >gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] Length = 906 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 30/357 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GTHIRNIAATCSRYYNESD 495 I +L GV V D R+ L N F +++ + P G ++A + S+ Sbjct: 270 IANLQAGVLVEDDDCRLTLVNQTFCTIFGLS---MPPDALIGMDCYDVARMIAPSLEHSE 326 Query: 496 GW-DLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT----MLTFVNVTDSV 549 + F I+ ++R+ + G + ++D LE +P+ + + +V++ V Sbjct: 327 SFFTHFQQIL----EQRQPVTGYMVRMADGRSLECDFVPVFEDDGYHGHLWLYRDVSERV 382 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L EA A K+SF+ +S+E+R+P+ +IG T L+ + L +Q QY Sbjct: 383 RGTAELVRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLMLDT---DLTREQRQY 439 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S +LL L+N+ILD + +++G M+L L+ + EV + + K E I + Sbjct: 440 AETIRTSGDMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVNELLGPKAAEKGIVL 499 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI---F 721 + G++ + ++ D R+ QI ++SNA+ F++ G + +AR + G+ + Sbjct: 500 TGMVSGQVPAMISGDSTRVRQILVNLISNAIKFTNVGEVTVRASARPDEALSGEHLIITI 559 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G IPED +F F RR G GLGL+I L GG +++ S Sbjct: 560 TVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRLSELMGGSITVQS 616 >gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 618 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 3/211 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+ELR+PL +IIGFT++L+ G+LN KQ +Y++ I S+ LLNL+ Sbjct: 384 ANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTLNEKQLEYLKDIHDSAKHLLNLI 443 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 NDILDL+ ++ G +L S ++D++N K ++ I++ IS + AD Sbjct: 444 NDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKASKHGIKLDAEISKEADITVTAD 503 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 +++ Q+ ++SNA+ F+ G +V + A R V++ G I ++ +F F Sbjct: 504 ERKIKQVLFNLVSNAVKFTPDGGSVKITAERKEDMIEIVVEDTGIGIKKEDRDKLFQPFS 563 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + + +G GLGL++ +S + LHGG + Sbjct: 564 QLETTYTKKYQGTGLGLALSKSLVELHGGKI 594 >gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1287 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/356 (27%), Positives = 166/356 (46%), Gaps = 32/356 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ID + GV V G + LSN +R P R I +T + GWD Sbjct: 795 IDQMPAGVGVSDMSGTMVLSNAIM--------DRFVP----RAIPSTLADRMPRWKGWDD 842 Query: 500 FAAIITSFD-DERKSLQGT-----LELL--SDSVLEY----SIIPLPNAQTMLTFVNVTD 547 I + +++L+G LE+L D E+ S PL + L + Sbjct: 843 KGQPIAPENWPGKRALRGEVVMPGLEMLHTDDDGREWWMRVSCAPLRDDDGQL--IGTCS 900 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ++ L + L++AD K+ F+ +++ELR+PL I +LK + G + + S Sbjct: 901 VIQDITELKQAEHHLKEADRRKDEFLATLAHELRNPLAPISHGLQILKRTASGDDSVRHS 960 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 E + ++ +V+D+L+++ + G ++L + LND+L V + M + Sbjct: 961 H--EMLERQVNHMIRMVDDLLEVSRITTGKVQLRKELVDLNDVLQGVVAASGAVMEAGSH 1018 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++++ S +AD RL Q+ S +L+NA +S G ++L A D + SV++NG Sbjct: 1019 QLRLELPAAPVSLLADPMRLAQMVSNLLNNAAKYSHSGGHIVLAAWTDGAQAVVSVRDNG 1078 Query: 728 SSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP + VF+ F+ N RGQ G+G+GL++V S + +HGG V S +G Sbjct: 1079 IGIPPALLGKVFDLFMQVDRNGRRGQ-GGLGIGLTLVRSLVEMHGGSVQALSEGKG 1133 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYIS 614 + +AL + D K F ++S+ELR+PLT I+G D L+ G + + Q+Q I Sbjct: 355 ARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHG-GQVPAGQTQM---IH 410 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ L LVN +LD + ++AG M+ +Y L E+ + + + +R++V Sbjct: 411 RNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGLRLRVDCP 470 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI----------FSV 723 G DR +I +LSNA F+ +G V L+ D D SV Sbjct: 471 PLDGPVHVDRDMYEKIVLNLLSNAFKFTLQGEIAVALRDVPDVHDAHGAGGANGAVELSV 530 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + GS I +F RF + R G G+GL++V+ LHGG V++SS++ Sbjct: 531 TDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVTVSSTEGEG 590 Query: 782 TTINCRIP 789 + R+P Sbjct: 591 SRFTVRLP 598 >gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 620 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 141/264 (53%), Gaps = 18/264 (6%) Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT--EKNEALRKADEIKNSFVQH 575 LELLS+S M + +++ +RAL EKN L+K D++K+ + Sbjct: 352 LELLSNSF-----------DKMAEKIAISNKELEKRALELEEKNTELKKLDDLKSDLIAI 400 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VS+E+R+PLT+I G+ +L+ +G +N+ Q + + + L L++ +LDL+ + Sbjct: 401 VSHEIRTPLTSIKGYVELVLDEAVGKINNSQRKCLTTARENVVRLNRLISSMLDLSKLAK 460 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G ++++ I + ++EV + E NI I + D + AD+ R+ Q+F ++ Sbjct: 461 GELEMHREEINIKKTIDEVIDDLKPISAEKNINITLEIDDII--INADKDRMKQVFINLI 518 Query: 696 SNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752 NA+ FS + + +K + +GD +VK+NG IP+D + VF+RF +R + Sbjct: 519 ENAIKFSPENEIIEIKGKEEYHGDVSITVKDNGEGIPKDKLEKVFDRFYQADLSPKRKGK 578 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL++ +S I HGG + + S Sbjct: 579 GTGLGLAVCKSIIQAHGGSIWVKS 602 >gi|298376642|ref|ZP_06986597.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266520|gb|EFI08178.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 533 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 136/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 308 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 364 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ +++G M+ Y+T+ L+++ +Q+ A ++ + +KVI SDG V Sbjct: 365 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVVPD---VKVIFESDGNDYCIV 421 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 422 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 480 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 481 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528 >gi|119494078|ref|ZP_01624621.1| Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452180|gb|EAW33383.1| Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1139 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 30/265 (11%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R + L KN L + + +K+ F+ +S+EL++PLT ++G + LLK LGSLN Sbjct: 343 ITEQHRIAQELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQALGSLND 402 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q++Y + I S L+ +VNDILDL ++ G ++L + + + + IA + H Sbjct: 403 RQARYAKLIHQSGRHLMMVVNDILDLTRMETGQLELIPEPVQIRAICQRAFE-IAGQHHS 461 Query: 665 N--------------------------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 N R + + L + VAD RL Q+ +LSNA Sbjct: 462 NADNNSKSSSSTQKNASDSPSPNPPKPQERFILDIEPSLETIVADELRLRQMLVNLLSNA 521 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 + F+ S + L+ + F++ + G IPED +F +F R+ G GL Sbjct: 522 LKFTPDDSQIGLQVSYWENWIGFTIWDKGIGIPEDKQHLIFQKFQQLESPLTRKFEGTGL 581 Query: 757 GLSIVESFINLHGGHVS-ISSSDEG 780 GL + + LHGG VS IS D+G Sbjct: 582 GLVLTQRLARLHGGDVSFISKQDQG 606 >gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E N L +A K+ F+ +S+ELR+PLT+II FT+LL L +Q + + Sbjct: 283 RELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLNDP--RLAPEQRESLSE 340 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + SS LL ++ ++LD + ++AG +KL + L DL+ + ++I + I + + Sbjct: 341 VLESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMD 400 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ++ AD R+ Q+ +LSNA+ F+ +G V ++ D + +V++ G +PE Sbjct: 401 CAPEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPE 460 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + +F F +G+ G GLGL++ S + H G + + S Sbjct: 461 EEQELIFQPFRQGREKGRPEGWGLGLALSASLVRAHDGRIWVES 504 >gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501] gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501] Length = 796 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 136/248 (54%), Gaps = 16/248 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK++ A++ K +F+ ++S+E+R+PL I+GF+DLL + N Q + + Sbjct: 509 LQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGFSDLLSQKIIDPENVNHLQSIIF-- 566 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS LL L+NDI +L +++GI+K+ T+ L +++ ++ + K ++ NI++ V + Sbjct: 567 -SSNNLLALINDIFELIRLESGIVKVESETVNLTEIIRQIYYKFSEKANQKNIKLIVNLN 625 Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFIFSV 723 + + D+ +L QI + +LSNA+ F+ GS + LK ++N + + Sbjct: 626 KNIPDILEFDKLKLYQIINNLLSNAIKFTKLGSVKVDVWANYFQSDLKTRQENCSIVIRI 685 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G I ++ K +F+RF VS + G+GLGL++ + I L G++ + S E Sbjct: 686 KDTGIGISQEKQKIIFDRFTQVSQETNREYEGIGLGLTLTQKMIQLLEGNLKLESELEKG 745 Query: 782 TTINCRIP 789 TTI +P Sbjct: 746 TTITVTLP 753 >gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1184 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ IK+ F+ +S+ELRSPL I+G++ +L+T +L +K Q +E I ++ + L+ Sbjct: 812 ANRIKDEFLAVLSHELRSPLNPILGWSRILRTKQLSP--TKVDQALETIERNAKLQAQLI 869 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G M LN + + L + +++ NI I+ G+ V D+ Sbjct: 870 EDLLDVSRILQGKMTLNVAPVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQ 929 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +LSNA+ F+ G + ++ A+ N VK++G I + VF F Sbjct: 930 NRLQQVIWNLLSNAVKFTPSGGQIEVQLAQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQ 989 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV F LHGG V +SS + + T R+P Sbjct: 990 EDGATTRKFGGLGLGLAIVRHFTELHGGTVHVSSLGQDLGATFTVRLP 1037 >gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54] Length = 744 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 4/235 (1%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E ALR A+E K+ F+ +++ELR+PL + LL+ S++ + + + E ++ Sbjct: 348 ETQAALRDANERKDEFLAMLAHELRNPLAPLHNGLHLLRHSEVDAAGTVRVH--EMLARQ 405 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + LV+D+LD+A +++G + L +++ L +LL ++ + + V + Sbjct: 406 VSHIARLVDDLLDIARINSGKILLRKASVDLVELLRNALEASRGPIEAAGHTVSVTLPEQ 465 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMC 735 AD RL Q+ S +L+NA ++ +G +ILK +D G+FI SV++NG IP DM Sbjct: 466 PVMMQADAVRLTQVVSNLLNNAAKYTDRGGHIILKGTQDAAGEFILSVRDNGRGIPVDML 525 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-INCRIP 789 VF FV R G+G+GL++V + LHGG V +S G I R+P Sbjct: 526 TRVFEPFVQVDGRRGSGGLGVGLTLVARLVALHGGSVRAASQGPGTGCEIVVRLP 580 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 16/181 (8%) Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVN +LD + ++ G M L E + + M + + V D + + Sbjct: 7 LQKLVNSLLDFSRIEGGGMVARLQPTDLARATQEHASAFRSAMEGAGLALSVQCD-AVPT 65 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738 + DR +I +LSNA ++ +GS + A RD+GD + SV++ G I ++ Sbjct: 66 VLIDRDWYERIVLNLLSNAFKYTLRGSIDV--ALRDSGDEVVLSVRDTGVGIARSDLANI 123 Query: 739 FNRFVSNAHRGQ------RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791 F RF HRGQ G G+GL++V + L GG +S+ S+ GV ++ +P K Sbjct: 124 FQRF----HRGQSPAARSHEGSGIGLALVRELVKLLGGAISV-DSEPGVGSVFTVTLPKK 178 Query: 792 E 792 + Sbjct: 179 Q 179 >gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] Length = 463 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612 EA R+A+E K F+ +S+ELR+PL I+GF++++K LG ++++ Y++Y Sbjct: 197 QEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLGPMHNQ--TYLDYSKD 254 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S LLNL+N+ILDL+ ++AG +L + L D+ K + + NI I + Sbjct: 255 INQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMHMRAAAKNIEIHEV 314 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730 + L AD + L Q+ +L+NA+ F+ + + D G +I SV + G+ I Sbjct: 315 YEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGGQYI-SVSDTGAGI 373 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE+ V F + A + +G GLGLSIV++ ++H G ++S T + Sbjct: 374 PEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLASKLREGTQATISL 433 Query: 789 PSK 791 P+K Sbjct: 434 PAK 436 >gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36] gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36] Length = 742 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +T++ + KA+ K++F+ ++S+E+R+PL IIG ++LK S L + Q Y+ I Sbjct: 244 ITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKDSPLSPI---QKDYLMTID 300 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +SS LL L+ND+LDL+ +++G + ++ T + +++ + IA K E NI + + D Sbjct: 301 SSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTASLIAVKAQEKNIELDIQID 360 Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSS 729 +L V D +L Q+ + SNA+ F++KG T+ L++ + D I FSVK+ G Sbjct: 361 PELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSKVVDADHIALSFSVKDTGIG 420 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +F F + R G GLGLSI ++L GG+++I+S Sbjct: 421 IESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLMGGYIAITS 469 >gi|332527608|ref|ZP_08403655.1| sensor histidine kinase/response regulator [Rubrivivax benzoatilyticus JA2] gi|332112011|gb|EGJ11988.1| sensor histidine kinase/response regulator [Rubrivivax benzoatilyticus JA2] Length = 752 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 18/256 (7%) Query: 550 RAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R AL E E LR+A K++F+ ++S+E+R+P ++G LL+ + L Sbjct: 211 RRRAALEELAEHLRQARRDAEAASEAKSAFLANMSHEIRTPFHGLLGMLSLLRET---GL 267 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q Y+ + S+ LL ++NDILD++ +++G M L + + L LL +V+ + + Sbjct: 268 NQQQVSYLRTATESADHLLAILNDILDMSQLESGRMVLMPAPVELRALLRDVEALMRPQA 327 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 H ++ + + +D L V D R+ Q+ +LSNA+ FS +G+ V+L + GD Sbjct: 328 HAKSLALHIAADPALPERVLCDATRVKQVLFNLLSNAIKFSDQGA-VVLDVQAEGGDGAA 386 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 +F+V + G I E ++F+RFV +++ R +R G GLGL I + L GG ++++ Sbjct: 387 ELVFTVSDQGVGIDEATLATLFHRFVQADSSRSRRHGGAGLGLEISRNLARLMGGDITVT 446 Query: 776 SSDEGVTTINCRIPSK 791 S ++ R+P K Sbjct: 447 SQPGQGSSFRLRMPLK 462 >gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis 638R] Length = 543 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 148/260 (56%), Gaps = 16/260 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ ++ ER L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ + Sbjct: 285 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ + I Sbjct: 345 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 397 Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713 +M + N R +V ++ + G + DR RL Q+ +++NAM F+S+GS T+ + Sbjct: 398 CLQMQQKNQRPEVQIMFTEKESGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 457 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 R + F VK+ G IP D VF RFV N +G GLGL+I I GG + Sbjct: 458 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGTI 514 Query: 773 SISSSDEGVTTINCRIPSKE 792 + + + R+P +E Sbjct: 515 GVETREGKGACFWFRLPVRE 534 >gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B] gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B] Length = 465 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 51/367 (13%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 K + ++ ++EG+ V +GRI+ N + + L HI + Sbjct: 140 KFMSDVLNSINEGIFVLNENGRIEFLNDFAKEI-------LDSAPHINEFLKS------- 185 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 + +DERK L ++++ + ++TF NVT + E+ Sbjct: 186 ------------AINDERKILTKEFNNHYYTIVKVKFNFSNETKYVVTFNNVTYEIELEK 233 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L++ D++K FV ++S+ELR+PLT I +T+ L ++ Q +++E + Sbjct: 234 --------LKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNMEVDR--ESQREFLETV 283 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L +L+ND+LD +++G M+L YS L +L+ EV +++ + ++I V Sbjct: 284 YEQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSC 343 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730 + S AD++R+ Q ++ N++ FS K V + + + +++NG I Sbjct: 344 ES--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSIIIEDNGIGI 401 Query: 731 PEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 ++ + +F +F +RG R G GLGL+IV+ I LHGG ++++S+ TT Sbjct: 402 SQEDKEKIFEKF----YRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTF 457 Query: 785 NCRIPSK 791 IP + Sbjct: 458 ELVIPYR 464 >gi|77748572|ref|NP_641608.2| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 290 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 43 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFEDP 162 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + F V++ G IP ++ Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266 >gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1486 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 169/375 (45%), Gaps = 22/375 (5%) Query: 419 LTVQVDLETKYNTLVKVQ------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 + ++ D+ + T + V+ T++ G+ V DG I +N F LW + Sbjct: 541 IAIRADITERKRTEIAVKEALSLMNATLESTDNGILVTSIDGEILRTNCQFSHLWGVAKE 600 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 L G + R I + + + + ++D T+ L+ V E + P Sbjct: 601 LLDKGVNDRVILKQIKVLLKKPETF--LKRVEEIYEDRELEAFDTIALIDGRVFERASSP 658 Query: 533 LPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 + +F ++T+ + AL + E A + K+ F+ +S+E+R+P+ +I Sbjct: 659 MEVDGEYFGRVWSFRDITERTENQNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGVI 718 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G LL SK L Q++ V +S+ LL+L+NDILD + +DAG ++L L Sbjct: 719 GMLGLLSNSK---LTEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNLR 775 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 +L + + IA + + + + G S V D RL Q + + NA+ F+ +G Sbjct: 776 GMLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQGEV 835 Query: 708 VI---LKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 V+ LK A + + I SV + G IP D +F F R+ G GLGL+IV Sbjct: 836 VVRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAIV 895 Query: 762 ESFINLHGGHVSISS 776 + L GG VS+SS Sbjct: 896 KKISRLMGGDVSVSS 910 >gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1057 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 150/296 (50%), Gaps = 20/296 (6%) Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRK 564 +++R+SLQ S S LE L QT + T ++ A+R L +N+ +R Sbjct: 303 LEEQRRSLQQ-----SQSDLEVQQAEL--EQTNVQLEERTQALEAQRQALLIAQNQLVRN 355 Query: 565 ADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 ++E+ K+ F+ ++S+ELR+PL + + LL +K G+L+++Q +Y + I +S+ Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSTEQVKYAQAILSSNN 415 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGK 676 LL L+NDILDL+ ++AG ++L T+ +L ++++ + + +++ ++D Sbjct: 416 DLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLARQKGLALEIAAVADAP 475 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D QRL QI +L+NA+ F+ G + A G F+V + G I + + Sbjct: 476 T-QLVVDNQRLQQILKNLLANAIKFTEHGKVSLSVQAHAPGRVRFAVTDTGIGIAREQSE 534 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F F +RR G GLGLSI GG +S+ S + +P+ Sbjct: 535 VIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELPT 590 >gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 623 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 19/242 (7%) Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKL 599 ER + E+ +AL A + K+ F+ +S+ELR+PLT++IG + L + Sbjct: 223 ERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPENF 282 Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L KQ Y++ I S LL L+NDILDL+ V++G L S L + + ++ Sbjct: 283 PALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGKMAQQCLHTL 342 Query: 659 ATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 E N+ +K+ D L F AD +R+ QI +LSNA+ F+ KG V L +R + Sbjct: 343 RDFAKEKGVNLYLKMKVDQDL--FRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKD 400 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 IF VK+ G I ++ +F +F + + +R Q G GLGL++ + + LHGG + Sbjct: 401 KMAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQF 460 Query: 775 SS 776 S Sbjct: 461 ES 462 >gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 759 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 11/239 (4%) Query: 546 TDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 T S R ER AL E +A A+ K+ F+ ++S+E+R+P+ +IG +L+ + L+ Sbjct: 215 TFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLD 271 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q+ Y E IS S + LL ++NDIL+ + ++AG M+L + L + +V ++ K Sbjct: 272 EDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAA 331 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 E N+ + + D L + D R+ QI + + NA+ F+ KG I + + D Sbjct: 332 EKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTAL 391 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G+ IP+D +FN F A G GLGL+I + L GG +S+ S Sbjct: 392 RISVTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQS 450 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 102/366 (27%), Positives = 159/366 (43%), Gaps = 35/366 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYY 491 +D +EG+ PDG I+ +NPA ++++ L P + A T Sbjct: 299 VDTAAEGIITTRPDGVIEAANPAAHAIFRHAPGELVGRSVVELLPADRREDAARTLDEIA 358 Query: 492 NESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFV 543 + D A A+ + D E G E L YS+ + A L Sbjct: 359 HGRRHLDPTARGEAIALRPAVDGEAGGESGKTESFP---LAYSMALVKTAAGPLYAAILR 415 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + E IK F+ +S+E+R+P+ +IG LL + +L Sbjct: 416 DLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDT---ALQ 472 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q Y E I S+ LL ++NDILD + +DAG ++L L L+ V + +A + Sbjct: 473 ADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILAPRAV 532 Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDN--G 717 + + + G G+ + D RL QI + NA+ F+ GS IL +A DN G Sbjct: 533 AKGLDLASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFTDSGSVTILLNEEAPIDNDSG 592 Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D F V++ G IPE+ +F F RR G GLGL+I + L GG Sbjct: 593 DGGGVRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICKRLTELMGG 652 Query: 771 HVSISS 776 + + S Sbjct: 653 RIGLDS 658 >gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 845 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 19/240 (7%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E+ +TE+ E L+ AD+IK++F+ +S+ELR+PL +IIGFT ++ G LN+ Sbjct: 582 EKRVTERTEELQTALIRAEAADKIKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPLNN 641 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q++ + + S+ LL L+ND+LD++ ++AG +++N T L L+ V S+ + + Sbjct: 642 EQTKQLGMVRGSARHLLELINDVLDISKIEAGQLEVNSETFNLVALIERVVNSLTPMIEK 701 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNG 717 + + +LG V+DR+RL QI +++NA F+ KGS I LK + D Sbjct: 702 KGLVLHTSISKELGEIVSDRRRLEQILINLVNNAAKFTEKGSITITAEIVNDLKDSLDTT 761 Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F SV + G I D +F F + + G GLGL+I + L GG + Sbjct: 762 PTRFLKLSVIDTGIGIKPDDLDLLFKPFHQIDSGLSRLHEGTGLGLAICRRLLELMGGQI 821 >gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 926 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 792 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901 >gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 835 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 14/235 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 + RAL ++ R + K+ F+ +S+E+R+PL+ +IG ++LL G L+ +Q ++ Sbjct: 258 SRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLG---GRLSGEQREFA 314 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E ++ S+ LL+L+NDILD + ++G ++L L L +V Q + ++ + I + Sbjct: 315 ETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRIDLI 374 Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723 D L FV D R+ QI ++ NA+ F+ +G +L A NGD F V Sbjct: 375 ARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTERGH--VLLAVHHNGDSDDKIRLHFEV 432 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G IPE+ +F+RF+ RR G GLGL+I + G +S+SS Sbjct: 433 EDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSS 487 >gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 637 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%) Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D + K ++ LE+ D L Y I P + + ++ D ++ + L E Sbjct: 222 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 279 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K+ F+ ++S+E+R+PL I+GF++++ ++ ++ +Y+E I +S +LL L+ Sbjct: 280 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 336 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ +++G ++++ + + L+ EV++ KM ++N+ +KVI DR Sbjct: 337 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 395 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ LSNA+ + KGS + + G ++ V + G I ++ +F RF Sbjct: 396 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 453 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 Q G GLGLSI +S + GG + ++S +T +P +E Sbjct: 454 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 500 >gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 962 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 16/234 (6%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D++K+ FV VS+ELR+PL +++GF +LL T KL +Q +Y+ I +T L L+N Sbjct: 585 DQMKSEFVSTVSHELRTPLASVLGFAELLLTKKLKP--ERQQRYIATIYQEATRLTALIN 642 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRI---KVISDGKLGSF 680 D LDL +++G + ++ ++ ++ + + + +H + + K + G Sbjct: 643 DFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVSG----- 697 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D+ +L Q+F ++SNA+ +S G V + +D + V++ G IP + +F Sbjct: 698 --DQAKLHQVFLNLISNAVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFT 755 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F V N+ R + G GLGL+IV+ +++H G VS+ S +T +P E Sbjct: 756 KFYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLPLAE 809 >gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] Length = 957 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 707 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 763 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 764 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 822 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 823 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 878 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 879 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 932 >gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 647 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE L EA A + K F+ ++S+E+R+P+ +IIG T LL ++L + Sbjct: 153 DITDRKGAEMELIVAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTEL---S 209 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +YV+ I SS LL ++NDILDL+ V+AG ++L L +NE+ ++ H Sbjct: 210 AEQKEYVDGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQNINEIIRTQTAAAH 269 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD 718 E +++KV I + + V DR RL Q+ + NA+ F++ GS + A D Sbjct: 270 EKGLQLKVFIPEEIPDALVGDRLRLKQVLLNTIGNAIKFTASGSIAVTVALAEKQEDAAR 329 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FS+ + G I + +F F RR G GLGLSI + L GG + S Sbjct: 330 LTFSIADTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAES 389 Query: 777 SDEGVTTINCRIP 789 +T + IP Sbjct: 390 RKNTGSTFHFEIP 402 >gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 732 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 7/238 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + +T+ R E L + +++ +K++F+ ++S+E+R+PL I+GF+ +L T+ Sbjct: 484 LRITERKRIEEELLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTT---DD 540 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V I +++ +LL L+ DILDL+ ++AG ++ + + LN L+NE++ S+ K+ Sbjct: 541 EEEKKQFVSIIESNNVLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKI 600 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + ++ D+ RL Q+ +L+NAM F+ +G D F Sbjct: 601 A-DTVELRFTDRMPSCRLYVDKNRLSQVLINLLTNAMKFTKEGYIHFGYRLVDEDTLEFY 659 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP++ +++F RF+ + G GLGLSI + + GG + + SDEG Sbjct: 660 VSDTGCGIPKEQLRNIFERFIKLNNFVS--GTGLGLSICQVIVERMGGRIWV-ESDEG 714 >gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 407 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 145/272 (53%), Gaps = 21/272 (7%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 EL+ D VL E I PL + +++ AE+ ++ + L+ A D + Sbjct: 130 ELMLDGVLHHYENRIFPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 189 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + +++QY E I +S +LLNL NDIL Sbjct: 190 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 246 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 DLA+++A +K N I L D+ +++Q K +N +++ ++ D + + D R+ Sbjct: 247 DLASLEADSLKFNIRPIKLIDICLQLEQQFWHKT-QNGVKL-ILDDVDTDMYTSGDWNRI 304 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 +QI S +LSNA F+ KG I R+ DF+ F VK++G IP ++F RF Sbjct: 305 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVD 362 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 363 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 392 >gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 843 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT+ A KAD+ K+ F+ ++S+E+R+P+ I+G D+L + L+++Q Q V+ + Sbjct: 448 LTQAKLAAEKADQAKSEFLANMSHEIRTPMNGIVGMADILANT---DLSAEQQQCVDTVR 504 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS+ LL ++NDILDL+ ++AG M+++ L ++ V ++ +M E + Sbjct: 505 ESSSALLKIINDILDLSRLEAGKMEISPIDFDLRKCVDGVVDTLRPRMVEKGLTFTQTYT 564 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730 L D RL QI +L NA+ F+ +GS V L +RD D F VK+ G I Sbjct: 565 ADLPELAHGDNGRLRQILLNLLGNAVKFTKEGS-VGLHVSRDKSDPYRMCFEVKDTGIGI 623 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 ED + +F RF S A R G GLGL+I GG ++++S Sbjct: 624 SEDQAEHIFERF-SQADAATTRHFGGTGLGLTISNILAERMGGQITLAS 671 >gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 741 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 7/254 (2%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 ++ V++T+ RA AL E A+ K F+ +VS+E+R+PL ++G +L +KL Sbjct: 340 ISLVDITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKL 399 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Q ++++ I S +LL + D+LDL+ V+AG M L L + L + + Sbjct: 400 ---DEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFS 456 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E I + + + D + D R Q+ ++SNA+ F+ G+ I A +NG Sbjct: 457 ARAKEKGIGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTETGAVTISAAPAENGS 516 Query: 719 FIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + V + G IP + +F F V + G GLGLSI +L GG + ++ Sbjct: 517 ILLVRVSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVA 576 Query: 776 SSDEGVTTINCRIP 789 + T R+P Sbjct: 577 DDEPQGATFEIRLP 590 >gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 763 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 22/258 (8%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602 E+ + E+ + LR A+ K+ F+ ++S+ELR+PLT IIG + L +++ SL Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421 Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ QY++ I S LL ++N+IL+ + ++AG Y + L + Q+I K Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAG----KYVLSIQQFSLQKAAQNIHKK 477 Query: 662 MHEN------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N+++++ + + F AD +RL QI +L+NA+ F+ +G TVIL+ R+ Sbjct: 478 LRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWRE 537 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + IF V++ G I ++ +F F + + R G GLGL++ + + LHGG + Sbjct: 538 GNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIE 597 Query: 774 ISSSDEGVTTINCRIPSK 791 + S + + R+P++ Sbjct: 598 VESILQEGSIFTVRLPNQ 615 >gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1068 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 137/265 (51%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A++ L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+V Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTG 456 Query: 649 DLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++++ + + +++ + G V D QRL QI +L+NA+ F+ G Sbjct: 457 SVLQRLRETFEPLARQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A G F+V + G I + + +F F +RR G GLGLSI Sbjct: 517 GLTVQAHAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG +S+ S + +P+ Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601 >gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1040 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 135/245 (55%), Gaps = 8/245 (3%) Query: 535 NAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N QT++ + + +T+ + E L +++ +K++F+ ++S+E+R+PL I+GF+ + Sbjct: 645 NPQTLVGSSLVITERKKMEDDLISAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGI 704 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + + ++ +YV I ++ +LL L++DILDL+ ++AG M+ YS LN ++ E Sbjct: 705 LASIEE---EKEKQEYVSIIENNNALLLQLISDILDLSKIEAGTMEFIYSDFELNKIMAE 761 Query: 654 VKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 ++ S+ K+ N NI + + A+ RL QI +++NA+ F+ GS + Sbjct: 762 LESSLRLKLPPNKNISLTFEPQLPVCYIHAEHNRLSQIIINLVTNAIKFTDAGS-IRFGY 820 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + N F V + G IP+D + +F RFV + Q G GLGLSI + + GG + Sbjct: 821 EKRNKILYFYVSDTGCGIPKDKKEEIFGRFVKLNNFAQ--GTGLGLSICRTLVQHMGGEI 878 Query: 773 SISSS 777 + S+ Sbjct: 879 GLDSA 883 >gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 926 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 792 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901 >gi|302557886|ref|ZP_07310228.1| His Kinase A (phosphoacceptor) domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475504|gb|EFL38597.1| His Kinase A (phosphoacceptor) domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 594 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +E + DE + V +++ELR+PLTNI G+ D + L S + + Sbjct: 361 ALNDLSERRERTDEQRRVMVSDIAHELRTPLTNIRGWLDAAQDG----LAETDSALLTSL 416 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + +L ++V+D+ LA DAG ++L + L DL+ ++ + + I V + Sbjct: 417 QEEAELLQHIVDDLQVLAAADAGTLRLRPEDLDLRDLIKQIVSAHRATAQAGGVEIAVHA 476 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L S AD RL Q+ +LSNA+ + V L A R G VK+ GS I E Sbjct: 477 PDGL-SVHADPVRLRQVLGNLLSNAIRHTPPAGRVTLSARRVAGAVAIEVKDTGSGIREA 535 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 VF+RF RR G GLGLSIV + HGG VS++S T R+PS Sbjct: 536 DLPRVFDRFWRAEQSRSRRTGGSGLGLSIVRQLVRAHGGDVSVASRPHVETVFLVRLPS 594 >gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1055 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 183/362 (50%), Gaps = 24/362 (6%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 G+A+ P G++ N F L EE+ L +I R +D L A + Sbjct: 467 GIALGTPSGQLIRVNQRFCDLVGYEESELL-QLSFPDITHPDDRAAELNDLTQLLAGQRS 525 Query: 506 SFDDERKSLQ--GTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 ++ E++ ++ G + ++ +V L + + PN + ++ + E AL + +A Sbjct: 526 TYSREKRFIRKDGQWQWVNVAVSLVRTWMDTPNY-IIGVVEDIQQRKQTEVALQQALDAA 584 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A+ K+ F+ ++S+ELR+PL I+GFT L+ ++ SLN Q Y+ I+ S LL+ Sbjct: 585 EAANHGKSEFLANMSHELRTPLNAILGFTQLM--ARDASLNQDQQDYLGIITRSGEHLLD 642 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681 L+N++L+++ ++AG + L+ ++ L L++ + + + K +++ V + ++ + Sbjct: 643 LINNVLNMSKIEAGRISLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGM 702 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNGD----FIFSVKNNGSS 729 AD +L QI ++ NA+ F+S+G VIL+ A N D F V++ G Sbjct: 703 ADEGKLRQILINLVGNAVKFTSQGR-VILRVQEISDRITAPTNTDTQSRLFFEVEDTGVG 761 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP D ++F FV + R Q G GLGL+I F+ L GG ++I+S+ T + Sbjct: 762 IPPDELDTLFQAFVQTKTSQRSQ-SGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFD 820 Query: 788 IP 789 IP Sbjct: 821 IP 822 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 7/238 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +T+ R E L E E + K +FV H+S+E+R+P+ ++G +++L S Sbjct: 370 MTEITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMNAVVGLSEMLLDS---C 426 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + + +E I +S L ++ DILDLA V+AG ++L S+ + DL V + + Sbjct: 427 EDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAE 486 Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + DG G FV D+ R+ Q+ +LSNA+ F+ GS V + + G + Sbjct: 487 AKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTPSGS-VSARISASEGGVL 545 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V + G I E+ +F+ F RR G GLGL++ + ++L GG + + S Sbjct: 546 FEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRS 603 >gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1568 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 22/246 (8%) Query: 550 RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R + LTE+N AL KA + K+ F+ +S+E+R+P+ +IG T LL ++L Sbjct: 882 RQRQQLTEQNVALEKARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEL--- 938 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S Q + E I S LL ++NDILD + +++G M+L L + E + TK Sbjct: 939 TSDQRYFAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKA 998 Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARD 715 E N+ + + D + +++A D RL QI ++SNA+ F+ G + IL D Sbjct: 999 AEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFTPTGEVLVSVTAQILADEED 1058 Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 GD F+VK+ G IP D +F F V ++ Q G GLGL+I + + GG Sbjct: 1059 RGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMGG 1118 Query: 771 HVSISS 776 + + S Sbjct: 1119 QMWVES 1124 >gi|52842360|ref|YP_096159.1| response regulator TutC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|19880987|gb|AAM00615.1| response regulator TutC-like protein [Legionella pneumophila] gi|52629471|gb|AAU28212.1| response regulator TutC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 816 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 12/247 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E N+ L + D+IK F +VS+ELR+PL I+ ++L K L S + Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILDPLEMLLAEK--KLPSFVQNTL 234 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667 I ++ ILL VND+L+++ +DAG M L+Y+ I DL+ ++Q+IA ++ E + Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + +L + + D ++ + ILSNA+ F+ + + V ++ + N + +++N Sbjct: 292 VFSMDLPDELQAQI-DPDKIQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP D+C+++F RF R G GLGLSI + F+ LHGG + ++ G Sbjct: 351 GPGIPSDLCETIFERFFQIEESTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410 Query: 785 NCRIPSK 791 +P K Sbjct: 411 TIELPLK 417 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 ++KA++ + FV H S++L++PL + ++ LG + S+QS+ Y+ + ++ + Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674 L++ +L A +G + TI + L+ ++ Q++ ++ + + V++ Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +L L ++F+ +L N++ + I+ ++ F F V ++G I + Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + R + G+GLSI + + GG +S+ S Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 8/222 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ + R DE FV VS+ELR+PLT+I G +L + L + + + + +E Sbjct: 1110 RDVTERKQIERMKDE----FVSVVSHELRTPLTSIHGSLGMLASGLLSADSEQGKRLLEI 1165 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S+ L+ L+NDILD+ +++G +K+ + L+DL+ + ++ +++ V Sbjct: 1166 ATDSTERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVS 1225 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D R++Q + +LSNA+ FS+ TV L A + + +VK+NG IP Sbjct: 1226 SPSI--QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDELLLTVKDNGRGIPA 1283 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D S+F RF V ++ G GLGL+I +S I HGG + Sbjct: 1284 DKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRI 1325 >gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 592 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 152/349 (43%), Gaps = 27/349 (7%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 GV G G I NPA R L E ++ H+ +R Y +D D + Sbjct: 262 GVIFIGQGGDILYINPAARRLLDVGEKDVTGKHHVE-----VTRSYALADSVDF---VFQ 313 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 +K L L +E +I+P+ + + V + + L++ Sbjct: 314 EGQPLKKEF--VLHNLGGKAVETNIVPVKQEAGLQGVLVVLNDI----------SELKRL 361 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + I+ FV +VS+ELR+PL I GF + L S N Q+ I + + +VN Sbjct: 362 ETIRKDFVANVSHELRTPLAAISGFAETLMMEN--SDNPAVQQFARIIYDEAQRMTRMVN 419 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +L L+ +++ +L+ L L+ V Q ++ E ++++V ADR Sbjct: 420 SLLQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRD 479 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 R++Q+ +L NA FS TV ++ G+ + V + G IPE+ VF RF V Sbjct: 480 RIVQVLMNLLDNATRFSPPDGTVTVRGTLLPGEILVEVIDEGPGIPEEEAARVFERFYRV 539 Query: 744 SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 A RGQ GVGLGL+IV+ + HGG V + S + +P K Sbjct: 540 DKARTRGQ--GVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLPGK 586 >gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 1003 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 17/261 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F ++TD E+ + E +AD+ K F+ +S+ELR+P+ IIG +LL T++ Sbjct: 741 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE 796 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ Q Y+ + SS LL+++N+ILD + ++ G M LN+ I L LL V Sbjct: 797 ---LDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLF 853 Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716 + K + + + I+ + + D RL Q+ ++SNA+ F+ +GS T+ ++ R Sbjct: 854 SAKAKQKGLSLSFINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITMSVEGLRRT 913 Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769 G F VK+ G I ++ +F F S H R G GLGL+I + + L G Sbjct: 914 GTQEFTLAFQVKDTGIGIAPELQHQLFTSF-SQLHPSLNRKYGGTGLGLAISKKLVELMG 972 Query: 770 GHVSISSSDEGVTTINCRIPS 790 G + + S + ++ IP+ Sbjct: 973 GVIGVESRENAGSSFYFTIPT 993 >gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 752 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 10/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E +AD K++F+ +S+ELR+PL IIG ++LL +S L+ + +Y I Sbjct: 350 LKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSS---GLSGELVEYARTIQ 406 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + LL L+NDILD++ +++G +K+ L +L V +++ + ++R + ++ Sbjct: 407 TAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVLEVA 466 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729 V+D RL Q+ ++ NA+ F+S+G V+ +A +F V++ G Sbjct: 467 SEVPAVVVSDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEAEEGRAKIVFQVRDTGIG 526 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + VF RF RR G GLGLSI + L GG + + S + + R Sbjct: 527 IPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSCFTVR 586 Query: 788 IP 789 IP Sbjct: 587 IP 588 >gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 642 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 11/238 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++ D +R + EK EA K ++ K+ F+ +S+E+R+P+ +IG TDL+ ++ Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q +YV+ I S T LLN++NDILD + +++G +L T L L+E I K Sbjct: 295 LDEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPK 354 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD--NG 717 + NI + ++ D +L Q+ +LSNA+ F+ G+ I ++ RD N Sbjct: 355 ALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCVRDQANS 414 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + I FSV + G +P + +F F H R+ G GLGL+I + + L GG + Sbjct: 415 ELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDI 472 >gi|294665317|ref|ZP_06730609.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604910|gb|EFF48269.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 290 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 43 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFEDP 162 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + F V++ G IP ++ Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266 >gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 29/257 (11%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK EA +A K++F+ ++S+ELR+PL I+GF+ LL K +L KQ Q + I+ S Sbjct: 412 EKAEAANRA---KSAFLANMSHELRTPLNAILGFSQLLNRDK--NLTPKQKQTLTSINRS 466 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LLNL+ND+L+++ ++AG + LN+ L LL+ +++ K+ +++ V Sbjct: 467 GSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLLVDKALD 526 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI---- 720 L ++ D RL Q+ +L+NA+ F+ +GS + L D+G+ + Sbjct: 527 LPPYIRTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPLRSPNLVPTHDDGNAVTEEH 586 Query: 721 -------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772 V++ G I ++F F ++A R G GLGL+I + I L GG++ Sbjct: 587 QPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNSTEGAGLGLAICQHCIELMGGNI 646 Query: 773 SISSSDEGVTTINCRIP 789 I S + TT+ ++P Sbjct: 647 LIDSKEGQGTTVQIKVP 663 >gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 852 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 130/261 (49%), Gaps = 27/261 (10%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T+L F ++T AER +K+ F+ +S+ELR+PL++I GFT+L+ Sbjct: 602 TLLVFRDITSETEAER--------------LKSEFISTISHELRTPLSSIYGFTELMVKK 647 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNE 653 +L N KQ++Y+E I + + L +LVND LD+ +++G + + V+ D+L Sbjct: 648 QLP--NEKQAKYLETIHSETERLTHLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTF 705 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + S + HE + + D + D Q+ Q+ S +LSNA+ +S +G + ++ A Sbjct: 706 YEAS--SLKHEFEL---IADDARPYELFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELA 760 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 VK+ G IP D +F++F V N+ + G GLGL I + + H G Sbjct: 761 HHEQIVSIKVKDEGIGIPSDALDRLFDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQ 820 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + S +T IPS E Sbjct: 821 IHVESIQHEGSTFIVEIPSYE 841 >gi|166713061|ref|ZP_02244268.1| putative two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 295 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 48 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 107 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + + + D Sbjct: 108 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGTTTLIFDD 166 Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ +G + + F V++ G IP + Sbjct: 167 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAE 226 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 227 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 271 >gi|196228932|ref|ZP_03127798.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227213|gb|EDY21717.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 958 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 524 SVLEYSIIP--LPNAQTMLTFV--NVTDSVRAERALTEKNEA---LRKADEIKNSFVQHV 576 SV ++P +P MLT + + +RA E N A +++ D++K +F +V Sbjct: 116 SVTTAVVLPPLIPRVLEMLTAARRSAEHGDKLQRAYAELNFAHARVKQLDQLKTNFFANV 175 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDA 635 S+ELR+PL I G + L L + + ++ + + +LL+ VND+LD++ ++ Sbjct: 176 SHELRTPLALIFGPIERL----LAEIRDEGARRELAVVRRNALLLHKYVNDLLDVSKLEV 231 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G M+L+YS + + + V + + E I + V + G+ + V D +L ++F +L Sbjct: 232 GKMELHYSRLDVATMARTVAGMFESMVSERGIAVAVKATGEAMAEV-DGDKLQRVFMNLL 290 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 SNA ++ GSTV L D+ +V++ G +P D+ K +F RF QRR G Sbjct: 291 SNAFKYAPDGSTVRLTLTGDDDHLTLTVEDAGPGVPVDLRKEIFERFQQGDRETQRRYGG 350 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLSIV+ F+ +H G + S G ++P Sbjct: 351 TGLGLSIVKEFVEMHRGSIVAGESSLGGALFRVQLP 386 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 25/283 (8%) Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----ERALTEKNEAL------------- 562 LL D +Y + P A+ N + RA +R L +++ L Sbjct: 524 LLQDGAQDYVMKPFSVAELRARVRNQLQTKRARDVLQRTLDTRSQDLAAMVSELARARSV 583 Query: 563 -RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 A+ K+SF+ +S+ELR+PLT + T L S S +++ I + + Sbjct: 584 AESANSAKDSFLAVLSHELRTPLTPALAATSAL-ISAPPSDPEVLREFLAVIRRNIELEA 642 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGS 679 LV+D+LD+ ++ +++ +T+ L+ +L + A + E I ++++G + Sbjct: 643 RLVDDLLDVTRINRDKLRIQPTTVDLHSILRDALSMAAPVLREKEIATVADLMAEGP--A 700 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL Q+FS +L+NA F+ + V L++ VK+ G I ++ +F Sbjct: 701 IHGDAARLAQVFSNLLTNAAKFTPESGQVTLRSEVVGSMVRVMVKDTGIGISGEVLPHIF 760 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 F RR G+GLGLSI + + HGG + S G Sbjct: 761 EPFRQGEAAKARRFGGLGLGLSIAKGLVEAHGGTIRAYSDGPG 803 >gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] Length = 622 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 135/255 (52%), Gaps = 10/255 (3%) Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +VL + +P N ML ++T ER L + E ++D +K++F+ ++S+E+R+ Sbjct: 361 NVLVRNYLPQDNIIEMLCINFDITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRT 420 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 PL I+GF+ +L+ + N ++ QYV I ++ LL L++DILDL+ ++AG Sbjct: 421 PLNAIVGFSSMLQEAD----NPEEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFT 476 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + + L NE+ Q++ + + +++ D +D+ RL Q+ S + NA+ F Sbjct: 477 FEKVNAKRLCNELYQAMQMRTSP-QVELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKF 535 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 +S+GS I + + FSV++ G I + +VFNRFV G GLGLSI Sbjct: 536 TSEGSITISYQIK-GKEAKFSVEDTGIGIEPEKQTAVFNRFVK--LNNFIPGTGLGLSIC 592 Query: 762 ESFINLHGGHVSISS 776 +S I GG + + S Sbjct: 593 QSIITQLGGKIGVDS 607 >gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1186 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RKA+E ++N F+ VS+ELR+PLT+I G L+ + +G NSK+ + V ++ L Sbjct: 953 RKANERLQNEFISMVSHELRTPLTSIHGSLKLM-SMMIGDSNSKEKELVAIALKNTDRLG 1011 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ND+LDL +++G + + L +L+ Q++A E N+ K++ + + Sbjct: 1012 RLINDVLDLERIESGRVSMTRQDCNLAELMQHTAQAMAPMALELNV--KLVVEPIDITIS 1069 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R++Q + +LSNA+ FS + VIL A D + K++G IP D + +F R Sbjct: 1070 LDPDRIIQTLTNLLSNAIKFSPSRANVILSATEREQDVLLCTKDSGPGIPADKTELIFER 1129 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 F R RR G GLGL+I + + HGG + + S E Sbjct: 1130 FQQVDSRESRRLGGTGLGLAICKQIVLQHGGKIWVESELE 1169 >gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 536 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V AERAL E A A+ K+ F+ ++S+E+R+PL +IG D L + L+ Sbjct: 130 DVTAKVAAERALVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALARTP---LS 186 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++ VE + +SS L LV DILD++ +++G M L LND L + Sbjct: 187 PQQAEMVELVRSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAE 246 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E + ++ ++ G F D R+ QI +LSNA+ F+++G + D GD Sbjct: 247 EKGLTFRLERAESACGVFNGDVVRVRQILGNLLSNAVKFTAQGQVSVHVDLLDRGDGAVL 306 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V++ G D +F RF RR G GLGLSI + + GG + S Sbjct: 307 LTLEVRDTGIGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAES 366 Query: 777 S 777 + Sbjct: 367 A 367 >gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response regulator, SSF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1323 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K++F+ +S+ELR+PL I+G+ +LK +L Q Q +E + LL+L+ Sbjct: 861 ANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD--NLTDAQRQQLEIVRGCGEHLLSLI 918 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 ND+LD+ ++A M+L + L+ LL +V K E ++ K +L V D Sbjct: 919 NDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRLPRAVRGD 978 Query: 684 RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 +++L QI +LSNA+ ++ +G TV ++ G F + + G+ IP D +F F Sbjct: 979 QRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIPRDKLGIIFEPF 1038 Query: 743 VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V A GQ R G GLGLSI ++L G V++ S +T +P Sbjct: 1039 VQLADGGQIREGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELP 1086 >gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1637 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 163/720 (22%), Positives = 314/720 (43%), Gaps = 79/720 (10%) Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173 SFE+++ H I+ + E++R Q+ D E + + + + + + +LR ++G Sbjct: 796 SFESFI---HPIQDDQFLERVR---QARDERVELEWEVSCRDSSYLVRALPYLRNSEING 849 Query: 174 IYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKNTETEGIV 232 + + + ++ + FK + D ++D LV DQ G I +AN +K + G Sbjct: 850 VVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVL-LDQKGKISYAN---RKMCDQLGYS 904 Query: 233 FQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287 ++ +G+ FK E R+ + A N E S L+ + + + L Sbjct: 905 NEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQQRDGTEFPVEVALTPVF 962 Query: 288 EAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVEL 338 G + D+S T Q+ E + + I I D ++ + F N+ F ++ Sbjct: 963 LQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDCSSEDHPITFVNKGFTDM 1022 Query: 339 -----WEI---DLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETH 388 EI + FL +++E + +R A E + K +++N + ++ + Sbjct: 1023 TGFSEQEIIGRNCRFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFW--NDLY 1080 Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448 H NG H + N ++T +++ + T + +D +EG+ Sbjct: 1081 ITPVHDENGILTHFVGVQN----------DVTERIEAARQTETNERTIRLLLDSTAEGLF 1130 Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAI--- 503 DG+ SN L E G + +A C N E D + A+ Sbjct: 1131 GLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVRAG 1190 Query: 504 --ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTE 557 I +D+ G +EY P+ ++TFV++ ++ E L E Sbjct: 1191 EAINRYDERFCRKDG-----ESFPVEYWCHPIQEDGKIVGAVVTFVDIETRLQVENELRE 1245 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEYISAS 616 A A+E K+ F+ ++S+ELR+PL+ I+GFT +L+ G++ +Y+ I + Sbjct: 1246 AKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQ----EYLSTIQRN 1301 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISD 674 LL L+ D+LDL+ ++A S++ L +LL ++ +++ T+ ++N + V S+ Sbjct: 1302 GDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFDV-SE 1360 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSIP 731 + D RL QI +++NA+ F+ KG V++++ + D+ + V ++G I Sbjct: 1361 PLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGIGIA 1420 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +++F FV R G GLGLSI + N GG + +SS++ + R+P Sbjct: 1421 DEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFTIRLP 1480 >gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii DSM 18315] gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii DSM 18315] Length = 502 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 135/243 (55%), Gaps = 14/243 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + VRA+R E +D +K++F+ ++S+E+R+PL I+GF+ LL + ++ Sbjct: 267 EDVRAKRLAEE-------SDRMKSAFIANMSHEIRTPLNAIVGFSTLLAQA---DTEEEK 316 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y+ I +S+ LL L+ DILD++ +++G ++ Y++ LN++ +++ + + E Sbjct: 317 QEYLRIIQSSNEFLLQLIGDILDISKIESGKLEFIYTSFRLNEIFQPQERAFSFRA-EPG 375 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +RI +DG +++ RL Q+ + LSNA+ F+S GS + G +++ V + Sbjct: 376 VRIIFETDGNDYYIESEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTETGIYVY-VTDT 434 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 GS I + +VF+RFV Q G GLGLSI ++ I++ G + + S + +T Sbjct: 435 GSGIAKKHLSTVFDRFVKLDMFKQ--GTGLGLSICKTIISILKGEIGVESEEGKGSTFWF 492 Query: 787 RIP 789 IP Sbjct: 493 TIP 495 >gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242] gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 883 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 129/239 (53%), Gaps = 6/239 (2%) Query: 560 EALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614 EA R A E K+ F+ VS+E+R+PL IIGF +++ + G + S++ +Y++ + Sbjct: 640 EAARVAAEHASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFGPIGSERYKEYLKDVH 699 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS T +L+LVND+LDL+ ++AG ++L++ + N +++E + T+ ++ + +++ Sbjct: 700 ASGTHVLSLVNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQTQANQGRVVVRLALA 759 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPED 733 +L AD + L QI +LSNA+ F+ G VI+ A + G + VK+ G + +D Sbjct: 760 QRLPPIRADERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGYVVIRVKDTGVGMSDD 819 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++ F A + RG GLGL + ++ I + +I S T I P + Sbjct: 820 EVETALEPFKQIATSRKVRGTGLGLPLTKALIEANHASFTIKSRKNEGTLIEVAFPPPQ 878 >gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1265 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A+ K+ F+ ++S+E+R+PL ++G LL+T+ LG+ ++ +YV+ Sbjct: 876 LMKSKEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLETAPLGA---EEKEYVDEAI 932 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S L NL++DILDL+ ++AG + + L D+ + V +A + ++ ++ D Sbjct: 933 TASKRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELRFFLD 992 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFIFSVKNN 726 +L SFV D RL QI ++ NA+ FS +G+ + K A++ +F V + Sbjct: 993 EQLPSFVLGDEVRLRQILFNLVGNAIKFSDQGTISVQAYLLPFAKIAQER--ILFMVSDE 1050 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I +++ +F F RR G GLGLSIV+ + L G ++I S+ TT+ Sbjct: 1051 GIGISDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLGTTV 1110 Query: 785 NCRIP 789 +P Sbjct: 1111 YLSLP 1115 >gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] Length = 514 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 3/250 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 +VT+ R + K A++ K+ F+ VS+ELR+PL ++GF+D+L G L Sbjct: 218 DVTEMELLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLE 277 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +YV I S LL++VN +LD++ ++AG +L + + + ++ + + + Sbjct: 278 NDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAMLGLQA 337 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + + +G AD++ + Q+ + NA+ F+ G V + AAR+ + Sbjct: 338 KEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGRMLKLT 397 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I D + + F V N + + G GLGLS+V+ + LHGG +I+S Sbjct: 398 VSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFAITSQPGA 457 Query: 781 VTTINCRIPS 790 T + +P+ Sbjct: 458 GTVVTIMLPA 467 >gi|238854408|ref|ZP_04644750.1| two-component system histidine kinase [Lactobacillus jensenii 269-3] gi|282931812|ref|ZP_06337297.1| two-component system histidine kinase [Lactobacillus jensenii 208-1] gi|238833030|gb|EEQ25325.1| two-component system histidine kinase [Lactobacillus jensenii 269-3] gi|281304119|gb|EFA96236.1| two-component system histidine kinase [Lactobacillus jensenii 208-1] Length = 387 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 130/232 (56%), Gaps = 6/232 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ LLK SL + Q +YV+ + + Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ D T+++ K+N++ + L +L +V + E NI + V ++ A Sbjct: 206 LANDLFDYTTLNSTKTKVNFAPLHLTSMLEQVAAGFELEAEEKNISLNVNTNPDDLVIDA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ ++SNA+ + S + L A + + + V+NNG +IP+ + +F R Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENNGEAIPKAALQKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V + + G GLGL+IV+ I+LH G ++ S+E +T+ +P K Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKIT-CESNERITSFIIHLPFK 376 >gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 662 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 3/236 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++E AL EA A + K+ F+ S+ELR+P++ IIGF +L+ L Sbjct: 390 DITERKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQVLELDH-DDLA 448 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + I ++ LL+L+ND+LD+++++AG L + L D+L E A + Sbjct: 449 PRHQTATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVLEEAYSLAAPIVK 508 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N+ + + + DR+R +Q+ +L+NA ++ +G+ V L D D + SV Sbjct: 509 AANLSFQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALTVQPDGNDVVVSV 568 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++G+ IP++ +F F QRR G GLGL++ +S + GG + ++ Sbjct: 569 TDDGAGIPDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNA 624 >gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 754 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 141/258 (54%), Gaps = 9/258 (3%) Query: 544 NVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++T+ RAER L E NE L+ D++K+ F+ +VS+EL++PLT+I G+++++ Sbjct: 496 DITERKRAERKLNEYANELAKANEELKSLDKMKDEFLSNVSHELKTPLTSIKGYSNIIYE 555 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 LG LN +Q + + I +S L LV+ ++ ++ AG ++ ++ + ++ ++++ + Sbjct: 556 ETLGKLNDEQKKTMNTIVRNSERLRRLVDSLIYMSMSQAGKIEYSFEPVQISKVIDDAIE 615 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++++ + + + D+ +L + + +L NA F+S G + ++A ++ Sbjct: 616 DTNFEINKKGLILNKNVSENIPQINGDKAKLTDMLTNLLDNATKFTSSGGEITVEAFEED 675 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 V + G IPED+ +F RF + ++ R + G GLGL I + ++ H G++ I Sbjct: 676 EHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSSIRRKYGGTGLGLYICKLIVDAHYGNIWI 735 Query: 775 SSSDEGVTTINCRIPSKE 792 S + TT++ ++P E Sbjct: 736 DSIEGKGTTVHVKLPETE 753 >gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 853 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 14/253 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + ER LT + A++ K+ F+ ++S+E+R+PL ++G LL+ + L Sbjct: 452 DVTARIEMERTLTAARNEAQAANQTKSEFLANMSHEIRTPLNGVLGMLQLLRDT---PLT 508 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +Y + SS L L+ DILDL+ V+AG M + + L + E + Sbjct: 509 AEQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCESFELARAVTEAVELFRPSAR 568 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGD- 718 + + ++V D L + VA D R Q+ + ++ NA+ F++KGS + R G+ Sbjct: 569 QAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFTAKGSVAVEAYPLPPRREGET 628 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 +FSV + G I + +F FV + RG R G GLGLSI +S + L GG++++ Sbjct: 629 RALFSVADTGCGIADADLTRLFEPFVQGS-RGYSRNAQGAGLGLSICKSLVELMGGNIAV 687 Query: 775 SSS-DEGVTTINC 786 S G T C Sbjct: 688 DSEVGRGTTIFFC 700 >gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 575 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 15/249 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L + +++K+ F+ +S+ELR+PL +I+GF+DLL SK LN KQ +YV I Sbjct: 284 LAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLANSK--DLNEKQKRYVSNIQ 341 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL +ND+LDLA +++G M+L S I + DL+ ++ + NI + D Sbjct: 342 MSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSEID 401 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730 K+ D ++ QI + +LSNA+ F+ +G V + AAR G+ V++ G I Sbjct: 402 PKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHV-AARLCGENPKLMDLIVEDTGIGI 460 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--------GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 P D + +F +F + R G GLGLSI+ L G V + S + Sbjct: 461 PLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRGS 520 Query: 783 TINCRIPSK 791 R+P + Sbjct: 521 KFTARLPVR 529 >gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 810 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 29/268 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL I+GF+ LL + S++ +Y++ + ++ +LL L++DILDL+ ++A Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693 G Y+ + +N+ E+ +S++ K+ + +++I + D+ R Q+ S Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPFPECYIYTDKNRFTQVISN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +G + + F V++ G IPE+ KSVF RFV Q G Sbjct: 712 FINNALKFTQQGCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781 GLGLSI +S ++ GG + + S+ EGV Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796 >gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1092 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 10/260 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L V++ + E L + + +A+ K+ F+ VS+E+R+PL +G +LL S Sbjct: 483 LLGLVDINEHKANEMLLIQAKQTADEANRAKSIFLAIVSHEIRTPLHGAMGHLELLARSP 542 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 LG +Q+++V+ I S LL+LVND+LD ++A +K+N + N++ +S Sbjct: 543 LGF---EQAEWVDMIRRSFDALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSF 599 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 + +N++ ++D L V D QRL QI +L NA+ F+ +GS +I + + Sbjct: 600 GASILQNDVAFYCMTDPDLDGVVEGDDQRLAQILQNLLGNAVKFTERGSIMISSRCLKQQ 659 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 GD I F V + G IP M ++F RR G GLGL + + L GG Sbjct: 660 GDTIWARFEVADTGIGIPASMQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGR 719 Query: 772 VSISSSDEGVTTINCRIPSK 791 +S+SS + +P K Sbjct: 720 ISVSSEPGKGSVFRVDLPFK 739 >gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 933 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 18/234 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILL 621 R+ + +K+ FV VS+ELR+PLT+I G DLL SK+ S+ +Q + I+A++T L+ Sbjct: 424 REVERLKDEFVSVVSHELRTPLTSISGALDLL-ASKVVPAGSEDAQRMLNIAANNTDRLV 482 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDILD+ +++G +++ DL+ + + + + I++ + L + + Sbjct: 483 RLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAM---SPLSAHL 539 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIP 731 AD R++Q+F+ ++SNA+ FS G+TV + A N +F VK+ G IP Sbjct: 540 WADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRGIP 599 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 D +S+F RF V + Q+ G GLGL+I S + HGG + S+ EG T Sbjct: 600 ADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGST 653 >gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1095 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 132/248 (53%), Gaps = 11/248 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ D AE+ L + E +A++ K++F+ ++S+E+R+PL IIG LLK +L Sbjct: 377 LNINDKKVAEQELIKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNE---NL 433 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +YV++++ +S LL+L+NDI D + +++G MK+ L D +NEV + + + Sbjct: 434 PKHVVEYVKHLNMASHHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRA 493 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717 E NI + V D + S + D R+ QI + +L NA+ F+ G I + + Sbjct: 494 KEKNIELTVFVDPLIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSV 553 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-I 774 D +F +K+ G I D + +F F ++ G GLGL+IV+ I+ G ++ I Sbjct: 554 DILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFI 613 Query: 775 SSSDEGVT 782 S +G T Sbjct: 614 SEPGKGTT 621 >gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 962 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 162/361 (44%), Gaps = 21/361 (5%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I+ + +GV++ D I N A W + L C Y++ D Sbjct: 608 IESIKDGVSILDADMNIVRVNDAMNK-WYEKNTPLE--------GKKCYEAYHDRDSPCT 658 Query: 500 FAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFV-NVTDSVR 550 +I + ER +QG L E PL ++ T + FV ++TD R Sbjct: 659 PCPVIRCMETGETERNIVQG-LPDPEPQWFELLAYPLKDSTTGEITGTVEFVKDITDHKR 717 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE L E R+ + + ++ +ELR+ L NIIGFT +L + G LN KQ +++ Sbjct: 718 AEAELAEARLHGREVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNIYGRLNPKQQKHI 777 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I S+ L+NL++DIL+++ V+AG M+LN + +LLNE+ + + N+ I Sbjct: 778 QGIQKSAEHLMNLIDDILEISDVEAGKMELNIEMFSIIELLNEILIFLKPFAEDRNVEIT 837 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + D+ ++ Q ++ NA+ F+ +G V + + D F V ++G I Sbjct: 838 TDIPEYIPEINVDKAKIKQAIYNLIINAIHFTPEGRNVHISMEYSSYDLKFEVNDSGIGI 897 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + +F F + + + LGLS+ + +I LHGG + + S + I Sbjct: 898 SPTQLEELFRPFKEIYSESGVKPPDSNLGLSLAKEYIELHGGEIEVESESGAGNSFVFTI 957 Query: 789 P 789 P Sbjct: 958 P 958 >gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1079 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ +S+E+R+P+ IIG T+L S + + Q +Y+E + +S+ LL L+ Sbjct: 403 ANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPI---QQEYLEMVRSSAETLLELL 459 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 NDILD + ++AG ++L + L DLL + Q++ + H + + + + I + D Sbjct: 460 NDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLELALQIRPDVPDALTGD 519 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 RL Q+ ++ NA+ F+ +G +L +GD F V++ G IP + +F Sbjct: 520 PHRLRQVVVNLVGNALKFTERGEVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEAQARIF 579 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 N F RR G GLGL+I + + GG +++ S Sbjct: 580 NAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVES 618 >gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 803 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L K EA +A++ K+ F+ ++S+E+R+P+ I+G ++L + +L KQ +Y+ Sbjct: 294 LAAKTEA-EQANQAKSRFLANMSHEIRTPMNTILGMGEILLNAP--NLTPKQHRYLSISQ 350 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+NDILDL+ ++AG + L ++ L+D L + + + + ++ + D Sbjct: 351 RAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMARDKGLSMQCVID 410 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +L + V D QR QI +LSNA+ F+ +GS + + G F+V + G +PE Sbjct: 411 PQLPTHVHGDPQRFRQIVLNLLSNALKFTDQGSITLHAKPIETGRLQFTVSDTGIGMPEQ 470 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F FV RR G GLGLSI + + G + +S Sbjct: 471 VITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANS 515 >gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] Length = 400 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 145/272 (53%), Gaps = 21/272 (7%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 +L+ D VL E I PL + +++ AE+ ++ + L+ A D + Sbjct: 123 DLMLDGVLHHYENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKVEESDRL 182 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + +++QY E I +S +LLNL NDIL Sbjct: 183 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 239 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 DLA+++A +K N I L D+ +++Q K +N +++ ++ D + + D R+ Sbjct: 240 DLASLEADSLKFNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVNTDMYTSGDWNRI 297 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 +QI S +LSNA F+ KG I R+ DF+ F VK++G IP ++F RF Sbjct: 298 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVN 355 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 356 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 385 >gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297] gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297] Length = 767 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 11/246 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E+ + + E ++ F+ +S+E+R+PL ++G DLL ++L + +Q +Y+E Sbjct: 383 RVLREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQL---DEEQKKYIET 439 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S LLNLVND+LD + ++AG M + I + DL + + ++ ++ K+ Sbjct: 440 IQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKLT 499 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS--VKNNGS 728 D + ++ +D QR+ QI + ++SNA+ F+ +G V+ L + R NG S V++ G Sbjct: 500 IDPNVPEWILSDAQRIRQIATNLISNAIKFTDQGQVVVSLSSTRRNGHPYLSIQVRDTGI 559 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I +F+ + G+RR G GLGL+I + ++L GG +++ S + Sbjct: 560 GIASHEIAHLFDAY-QQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEFT 618 Query: 786 CRIPSK 791 ++P K Sbjct: 619 VQLPLK 624 >gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 546 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Sbjct: 258 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 315 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + Sbjct: 316 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRASSR 375 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + + AD + + Q+ +LSN++ F+ +G + LKA +G SV+ Sbjct: 376 GITIHEVFEQAMPRLWADERAIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLSVR 435 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS IPED V F SN+ + +G GLGL I ++ I+LHGG ++ S Sbjct: 436 DTGSGIPEDEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKS 489 >gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 1248 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF D++ T + G + Sbjct: 991 DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADMMATERFGPIG 1050 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +YVEY I S +L++VND+LD++ ++AG M +++ + LN+ + E + Sbjct: 1051 --HPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQP 1108 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ A + NG Sbjct: 1109 QANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSV 1168 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISS 776 +++ G + + F A G+R G GLGL + ++ ++ + + SI+S Sbjct: 1169 ALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITS 1228 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1229 TPNEGTLVEITFPSQ 1243 >gi|294627017|ref|ZP_06705607.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598679|gb|EFF42826.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 290 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 43 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFEDP 162 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + + F V++ G IP ++ Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266 >gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 768 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 137/244 (56%), Gaps = 6/244 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ S E L + +AD++K++F+ ++S+E+R+PL I+GF++LL TS + Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ ++++ IS +S +LL L+NDILDL+ + +G M + LN+LL+ + ++ M Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLM 636 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + + +K+ AD RL Q+ + +++NA F+++G +I + +I Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780 SV + G IP D VF RF N +G GLGL+I + I GG++++ S + EG Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753 Query: 781 VTTI 784 T I Sbjct: 754 STFI 757 >gi|86158093|ref|YP_464878.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774604|gb|ABC81441.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 730 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL AD K++F+ +VS+ELR+PL ++G+ DLL KLG L +Q ++ +++S L Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLAEKLGPLAPRQRTALQVVASSGRRL 543 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + ++L+L+ + + L D++ + +A + E +R++ + Sbjct: 544 RAFIEELLELSRHELARPAEPLAPFPLVDVITQAVVGLAPRFAERGLRVRARVARGTPAA 603 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + R+R+LQ+ +L NA ++ +GS + L AA SV + G IPE+ +F Sbjct: 604 LGQRERVLQVLVNLLGNAERYAPEGSAIHLAAAAIGDRVAVSVTDRGPGIPEEHQALIFE 663 Query: 741 RFVS----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R A R + +G+GL+I + + HGG + + S Sbjct: 664 RLYQVRDDRAPRREGGALGIGLAIAKGIVEAHGGEIRVRS 703 >gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium] Length = 1248 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 138/276 (50%), Gaps = 23/276 (8%) Query: 533 LPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 LP+ Q+ + + +VTD L + A + K+ F+ ++S+E+R+P+ I+G Sbjct: 641 LPDGQSRIYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGM 700 Query: 591 TDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 T+LL LG+ LN KQ ++ + + S LL ++NDILD A ++AG ++L VL Sbjct: 701 TELL----LGTPLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRT 756 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708 L+ + + +A + HE + + L S + D RL QI + +++NA+ F+ G V Sbjct: 757 LVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHGEIV 816 Query: 709 I-------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 + + + + F V++ G IP ++ +F+ FV RR G Sbjct: 817 VDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANGGMARRYGG 876 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + + L GG + ++S+ + R+P Sbjct: 877 TGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVP 912 >gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii] gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii] Length = 589 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 26/260 (10%) Query: 549 VRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAERAL ++ L++ A+ K+ F+ +S+E+R+P+ IIG DLL Sbjct: 38 LRAERALQRVSKELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMNAIIGMADLL 97 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + +L +Q +Y+ + LL+L+NDILDL+ V++G + L+ L++L+++ Sbjct: 98 WET---TLTPEQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDLSELIDKT 154 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710 + +A + +E + + +++ + D RL QI +L NA+ F+ KGS V+ Sbjct: 155 SEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKGSVVMSITN 214 Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFIN 766 R G FS+ + G +P D K++F F + AH Q G GLGLSI + Sbjct: 215 DPELRTPGAIRFSISDTGIGVPHDKIKTIFETF-TQAHSTIARQYGGTGLGLSISQQLAA 273 Query: 767 LHGGHVSISSSDEGVTTINC 786 L GG + + S +T +C Sbjct: 274 LMGGRIWVESRLGEGSTFHC 293 >gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 771 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 7/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L EK A A++ K+ F+ ++S+ELR+PL I+GF+++L+ G L +S+ ++Y + I Sbjct: 533 LAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSSRYNEYAKDI 591 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672 S LLN++NDILD++ ++AG +KL+ I L L+ E + + NI + + I Sbjct: 592 HDSGKHLLNVINDILDMSKIEAGHIKLSCEKIDLAPLIEECLRLTSIPAACKNIHVEQSI 651 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S G ADR+ + QI +LSN++ F++ G + ++ + + + ++ + G IP+ Sbjct: 652 SSGI--KLTADRRAMKQILLNLLSNSVKFTNNGGRIAVRTRKVDDAVVLTIADTGIGIPK 709 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + F V + + + G GLGL+I S LH G + I S + T I RIP Sbjct: 710 SALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTLLHHGRMRIRSREGIGTVIAIRIPD 769 Query: 791 K 791 + Sbjct: 770 R 770 >gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 754 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD +ERAL E + +A + K+ F+ S+E R+PL IIG + LL + L Sbjct: 210 DVTDRTDSERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMSGLLLET---LLT 266 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ YV+ + AS LL+L+ D+LD + ++AG ++L VL+DL+ ++ + +A + Sbjct: 267 PEQTTYVKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQ 326 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIF 721 + I D L + + D RL Q+ + NA+ F SS G +I+ GD F Sbjct: 327 ARQLEIASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRF 386 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I D +F F + R G GLGLSI + + GG +++ S + Sbjct: 387 MVRDTGIGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPD 446 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 447 SGSTFEVLVP 456 >gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] Length = 396 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 148/272 (54%), Gaps = 21/272 (7%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 +L+ D +L E I PL N + ++++ AE+ ++ + L A D + Sbjct: 119 DLMLDGILHHYENRIFPLDNEYLLCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRL 178 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ ++ +++ QY E I +S ILLNL NDIL Sbjct: 179 KSAFLANMSHEIRTPLNAIVGFSKLVIDAEC---TNEKEQYAEIIERNSEILLNLFNDIL 235 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 DL++++A + N I L D+ +++Q K+ +N ++ ++ D +V+ D R+ Sbjct: 236 DLSSLEADSLSFNIRPIKLIDICLQLEQQFCYKV-KNGTKL-ILDDVDTELYVSGDWNRI 293 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 +QI S +LSNA F+ KG I R+ DF+ F VK++G IP + ++F RF Sbjct: 294 IQIISNLLSNAAKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRFGKIN 351 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 352 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 381 >gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1187 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + +K E L ++ K F+ ++S+ELR+PL +I+ + L + +LN Q + Sbjct: 502 QEIQQKAEELEQSTRYKTEFMANMSHELRTPLNSILLLSRYLAENTEQNLNPDQVESASV 561 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LLNL++++LDL+ ++AG M+L Y + + +LN++K A E + + Sbjct: 562 ILNSGNGLLNLIDELLDLSKIEAGKMELEYQQVSVEGVLNDIKSLFAPIAKEKKLDFIIK 621 Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-FSVKNNGSS 729 ++ ++ DR RL QI +LSNA+ F+SKG ++ L+ G+ + F+V + G Sbjct: 622 NELSEITQLETDRMRLEQILKNLLSNALKFTSKGQVSLTLRQPELTGNLLQFAVTDTGIG 681 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP++ + VF+ F +R+ G GLGLSI L GG +S+SS Sbjct: 682 IPQNKQQLVFDAFQQADGSTKRKFGGTGLGLSISRELARLLGGEISLSS 730 >gi|77462061|ref|YP_351565.1| hypothetical protein RSP_1521 [Rhodobacter sphaeroides 2.4.1] gi|77386479|gb|ABA77664.1| conserved hypothetical [Rhodobacter sphaeroides 2.4.1] Length = 520 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L + L+ + + ++W G+++WAN +Y + K + R Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297 L R+ +A + +E G ++ + + + G A+ V Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255 Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357 E T+ D + + +L + +AIFDQ+R L N + ++L + LA PS LE Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315 Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415 LR +PE ++ +W+ I + K++ + + +TW LP+GQT VI +P G M Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375 Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 FE+++ ++ +Y +++ +D + + +AVF P G + ++N A+ +LW Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427 >gi|329940075|ref|ZP_08289357.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329300901|gb|EGG44797.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 594 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +E + DE + V +++ELR+PLTNI G+ D + L + + + Sbjct: 361 ALNDLSERRERTDEQRRVMVSDIAHELRTPLTNIRGWLDAAQD----GLAEPDADLLASL 416 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + +L ++V+D+ LA DAG ++L+ + L +L+ + + + V++ Sbjct: 417 QEEAGLLQHIVDDLQVLAAADAGTLRLHPRVLDLRELVEQTMSAHRATARAGGVETAVLA 476 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 G+L + AD RL Q+ +LSNA+ + G V L A R G V++ G I E+ Sbjct: 477 PGRL-TVTADPVRLRQVLGNLLSNAIRHTPPGGRVTLGARRVPGAVAIEVRDTGCGIGEE 535 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+RF RR G GLGLSIV + HGG V + S T R+P Sbjct: 536 DLPRVFDRFWRAERSRSRRTGGSGLGLSIVRQLVRAHGGDVLVRSRPYEETVFTVRLP 593 >gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 621 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 20/259 (7%) Query: 545 VTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + DSV A + N+A +A + K F+ +S+ELR+PL IIGF+ LL ++ Sbjct: 360 IADSVGAVIKKEKANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLNAIIGFSQLLSSN 419 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + G++N K+ +Y I LLNL+NDILD + + + M+LN TI L ++ +E+K Sbjct: 420 RYGNMNEKELKYSFSILKGGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTF 479 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 I + I ++ + + D+ + +QI S +LSNA+ F+ V + Sbjct: 480 ITPLATKKGITVEYNNKFDI-DINLDKLKFIQIMSNLLSNAVKFTPDKGKVSVDI----- 533 Query: 718 DFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 DF+ SV ++G IPE +F+ F+ R+ G GLGL++V+ ++ +HGG Sbjct: 534 DFVAEYVQVSVTDSGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGG 593 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S +T IP Sbjct: 594 TIWVESELGKGSTFTFTIP 612 >gi|238062152|ref|ZP_04606861.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149] gi|237883963|gb|EEP72791.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149] Length = 453 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 1/235 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR A E K+ F+ +VS+ELR+P+T IIG + LL S L ++Q + V I Sbjct: 216 LDEKSAQLRTASESKSRFLANVSHELRAPVTAIIGLSRLLADSASDPLTAEQVRQVGLIR 275 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL LVND+LDLA ++G ++ N++ + L + +++ ++ + +++ V Sbjct: 276 DSAVDLLGLVNDLLDLAKAESGRLEPNWTEVDLRAVFGQLRGTLRALSNRPGVQLVVEDP 335 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G+ +D L Q+ +L N + F+ +G V L+A +G + +V + G+ I ++ Sbjct: 336 PPPGTVRSDEVLLAQVLRNLLHNGLKFTERGE-VRLRAEVRDGRWWLAVSDTGAGIAPEL 394 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F F + G GLGLS +L GG + ++S +T +P Sbjct: 395 HERIFEEFYQVPGNTRVGGTGLGLSYARRVTHLLGGTLELTSEPGRGSTFTVTLP 449 >gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 7894] Length = 771 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 124/514 (24%), Positives = 218/514 (42%), Gaps = 81/514 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685 LD +++ G ++L+ + L ++N+V ++ + I + V + LG+ + D + Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4] Length = 599 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 3/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L + + L+ A+E K+ F+ VS+ELR+PL I+GF+D+L G + + + +YV I Sbjct: 262 LVKLDADLQTANEAKSRFLAAVSHELRTPLNAILGFSDILMGDYFGRMEDERHREYVRLI 321 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL++VN +LD+ ++AG +L L+ +++ + +A + E +++ Sbjct: 322 RQSGGHLLSVVNTMLDMCRIEAGRYELLVEPFSLSQAIHDCENMLALQAQEKGVKLTSRI 381 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + AD + + QI ++ NA+ F+ G V + AAR D + SV + G I +D Sbjct: 382 GRDVSELTADPRAVRQILINLVGNAIKFTEPGGVVTVDAARFGKDLVISVSDTGIGIAQD 441 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + FV R+ GVGLGLS+V+ + LHGG ++S + T ++ +P Sbjct: 442 RILLLGQPFVQVDSDYNRKFDGVGLGLSLVKGLVALHGGTFLLTSREGEGTVVSITLP 499 >gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51] gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 564 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N LR+ ++ K+ F+ +S+ELR+PLT+II F ++L+ + K+ + + I Sbjct: 314 LEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKC-PKEQKITQEIR 372 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+S +LL ++N+IL++A ++AG +L I L D++N V+ I + + +I+ + Sbjct: 373 ANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLH 432 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732 + DR+ L +I +LSNA+ F+ +G + + A D + + +V++NG I + Sbjct: 433 SDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRK 492 Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 + +F +FV S+ HR Q G GLGL++ + LHGG + + S D+G Sbjct: 493 EDQPYIFEKFVQSDSSIHR-QYNGSGLGLALAKELAELHGGWIKVVSELDKG 543 >gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 421 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + +++KN FV VS+ELR+PLT I G ++L T L + Q ++ ++S LL L Sbjct: 192 EVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREAEQMLKIAVSNSERLLRL 251 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682 VN+IL+L +D+G M+LN +N ++ + +++ + + I + D +A Sbjct: 252 VNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDVHNSKILA 311 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + ++Q+ + +LSN++ FS G+ V + + + I +VK+ G IP D K++F RF Sbjct: 312 DEETIIQVLTNLLSNSVKFSHAGTKVEIYTKMGDKEIIIAVKDYGKGIPADKLKTIFERF 371 Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VS+A Q G GLGL+I ++ + H G + I S+ + +T +P Sbjct: 372 EQVDVSDAR--QNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420 >gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1155 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++A++ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+++Q + Sbjct: 467 MQAQQELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSAEQVK 526 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + E I ++ LLNL+NDILD+A V+AG +++ T L L+ ++ + Sbjct: 527 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQLERLVEGLRGMFLPLAEHKGLA 586 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V + + + DRQRL QI +LSNA+ F+ G + + + +F+V+++G Sbjct: 587 FEVNVEPHVPVTLFTDRQRLEQILKNLLSNAIKFTDHGQVSLTISHQAGTGIVFAVRDSG 646 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I D +++F F RR G GLGLSI +L GG +S+ S+ + + Sbjct: 647 IGIAADQQQAIFGAFHQVDGSSNRRYGGTGLGLSISRDLAHLLGGQISVDSNPGQGSVFS 706 Query: 786 CRIPSK 791 +P + Sbjct: 707 LTMPER 712 >gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 1190 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 934 DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 993 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S+YVEY I S +L++VND+LD++ ++AG M L ++++ LN+ + E + Sbjct: 994 --HSRYVEYATDIGRSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQP 1051 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1052 QANSQRVIIRTALSQAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSV 1111 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +++ G + + F VS R + G GLGL + ++ ++ + +I+SS Sbjct: 1112 VMRIRDTGVGMTRSELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSS 1171 Query: 778 DEGVTTINCRIPSK 791 T + PS Sbjct: 1172 PNEGTLVEVTFPSP 1185 >gi|301309905|ref|ZP_07215844.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831479|gb|EFK62110.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 508 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 134/231 (58%), Gaps = 13/231 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K++F+ ++S+E+R+PL I+GF+ LL S ++ +Y+ I +S+ LL L Sbjct: 283 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 339 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681 + DILD++ + +G M+ Y+T+ L+++ +Q+ A ++ +KVI SDG V Sbjct: 340 IGDILDISKIKSGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 396 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +++ RL Q+ + LSNA+ F+S GS D+G +++ V + G I ++ S+FNR Sbjct: 397 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 455 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV N+ ++G GLGLSI ++ I G + + S + +T IP + Sbjct: 456 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503 >gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1165 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 3/218 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L +Q +Y E I AS++ LL Sbjct: 481 LEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVRYAETIHASNSDLL 540 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L+NDILDL+ V+AG + ++ + + +L +++ +++ V + G Sbjct: 541 VLINDILDLSKVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQFSVERAPGVPDMI 600 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D QR+ QI +LSNA+ F+ +G + AA D F V++ G I D + +F Sbjct: 601 FTDGQRITQILRNLLSNALKFTERGEVALTVAASDADTLRFDVRDTGIGIAADKLELIFE 660 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R G GLGLSI F L GG VS++S Sbjct: 661 AFQQADGSTSRNYGGSGLGLSISREFARLLGGRVSVAS 698 >gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1135 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + + L + EA A+ K+ +V +S+ELR+PL +I+G+ +L Sbjct: 650 QTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELRTPLNSILGYAQILLR 709 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++ + + I S LL+L++ +LD+A ++AG + L S I + L +++Q Sbjct: 710 DE--AMAPRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNLEQSEIAFPEFLQQLRQ 767 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 IA + E +R S G++ + V D +R+ QI +L NA+ ++ GS + L+A+ Sbjct: 768 MIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAVRYTDAGS-ITLRASYL 826 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F + + G IP + + +F F Q G+GLGL+I L GG +S+ Sbjct: 827 RETATFEIADTGIGIPAEQIERLFQPFERGNPLRQDNGLGLGLTITRMLTALMGGELSVK 886 Query: 776 SSDEGVTTINCRI 788 S + T R+ Sbjct: 887 SQEGQGTVFQLRL 899 >gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1271 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 143/259 (55%), Gaps = 15/259 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++T +A+ A + E +A+ K+ F+ +S+E+R+P+ ++G +D+L Sbjct: 866 LLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTPMNVVVGMSDIL---- 921 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L SL + Q+Q +++ I + T LL+L+NDILDL+ ++AG ++L ++ V N +L ++ + Sbjct: 922 LESLPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEHA--VFNPIL-LIEDT 978 Query: 658 IATKMHENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 IA + ++ ++ G + + DR RL QI +L NA+ F+ KGS V ++A Sbjct: 979 IAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNAIKFTEKGS-VEVQAG 1037 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 N F ++V ++G I D +F++F RR G GLGL+I ++ + L GG Sbjct: 1038 YANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSGLGLAICKNLMELMGGT 1097 Query: 772 VSISSSDEGVTTINCRIPS 790 + S+ + C IP+ Sbjct: 1098 IETQSTLGQGSRFYCAIPA 1116 >gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 488 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 1/229 (0%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A K ++ + F+ +VS+ELR+PLT I G+T+ L + + + ++++ I + L Sbjct: 247 AYNKREQNRREFLANVSHELRTPLTIIQGYTEAL-LDGIVTDEKIREEHLKNILQEAERL 305 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + N++LDLA+++ G KL + I L + + + T+ E I +++ + + G Sbjct: 306 KAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNAFKTQFFEKGIELELEVNVQDGKV 365 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 V DR +LL++ +LSNA+ F+ G V + D+ VK++G IPE + +F Sbjct: 366 VGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEGEKDYQIHVKDSGPGIPEQDLEKIFE 425 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +G GLGL+I +S + HGG + ++ EG +P Sbjct: 426 RFYKVDKARSSKGFGLGLAITKSIVEAHGGQIFARNNPEGGAKFTVVLP 474 >gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 484 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627 K+ F+ +S+ELR+PL I+GF++LL T L+ ++++ Y I S LL LVNDI Sbjct: 233 KSHFLAAMSHELRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDI 292 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ V+AG +L + + L+ + +A + +K + +L + ADR+ Sbjct: 293 LDLSRVEAGAYELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAF 352 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI +LSNA+ F+ +G V + + V++ G + PED+ + F + Sbjct: 353 KQIVLNLLSNAVKFTPEGGRVQVSVRSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAGD 412 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RG GLG+++V+ + LHGG + S+ T++ +P Sbjct: 413 CTQRARGSGLGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLP 455 >gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2] gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 406 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 145/272 (53%), Gaps = 21/272 (7%) Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568 +L+ D VL E I PL + +++ AE+ ++ + L+ A D + Sbjct: 129 DLMLDGVLHHYENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 188 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+PL I+GF+ L+ + +++QY E I +S +LLNL NDIL Sbjct: 189 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 245 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 DLA+++A +K N I L D+ +++Q K +N +++ ++ D + + D R+ Sbjct: 246 DLASLEADSLKFNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVDADMYTSGDWNRI 303 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 +QI S +LSNA F+ KG I R+ DF+ F VK++G IP ++F RF Sbjct: 304 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVN 361 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 Q G GLGL++ + GG + + S + Sbjct: 362 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 391 >gi|224539553|ref|ZP_03680092.1| hypothetical protein BACCELL_04458 [Bacteroides cellulosilyticus DSM 14838] gi|224518834|gb|EEF87939.1| hypothetical protein BACCELL_04458 [Bacteroides cellulosilyticus DSM 14838] Length = 288 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVE 611 + L + NE +++++KN+F+ ++++E+R+PL I+GFT++L +T L ++ +++ Sbjct: 50 KTLQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAETDNLSR--EERMIFLK 107 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + L+ ++ND+LD + ++A M+ + +N L+ E+ + + I+I+ Sbjct: 108 EINDNKNFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEICAAENAHPRPSGIQIEF 167 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + DR R Q+ + ++ NA+ F+ +GS I N F F V + G I Sbjct: 168 VEKLPQCRLMIDRVRFAQVINNLVKNALKFTEQGSVRIGYRRLSNDSFYFYVADTGCGID 227 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG------VTTIN 785 E+ +++F RFV + RG GLGLSI +S + +GG + + S G T Sbjct: 228 EESRRAIFERFVKMNY--NIRGTGLGLSITKSIVEHYGGGIGVESKKRGGIYFLLYFTCQ 285 Query: 786 CRI 788 CR+ Sbjct: 286 CRV 288 >gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 747 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +AE AL + A+ K++F+ +VS+ELR+PL ++GF LL +L Sbjct: 258 DITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLANDN--NLT 315 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I+ S LL L+N++LDLA ++AG N + + + L+ +V+ + Sbjct: 316 PTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIEDVQLLFRNRAE 375 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + V G + + ++D +L QI +LSNA+ F+ GS V L R+ +F+ Sbjct: 376 AKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVGS-VHLHVIREEQRLLFT 434 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G IP + +F F G+ GVGLGLSI L GG +S+ S Sbjct: 435 VEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLIGGDLSVYSEGR 494 Query: 780 G 780 G Sbjct: 495 G 495 >gi|256391987|ref|YP_003113551.1| histidine kinase [Catenulispora acidiphila DSM 44928] gi|256358213|gb|ACU71710.1| histidine kinase [Catenulispora acidiphila DSM 44928] Length = 583 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 8/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K+ LR+A E K F +VS+ELRSPL ++IG + LL S L +Q V I+ Sbjct: 209 LEDKSRQLREASETKTRFWANVSHELRSPLNSVIGLSQLLADSTPEELGEQQRHQVGLIA 268 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS L LV+D+LD+A +AG + + + L LL +++ + + + Sbjct: 269 ASGETLRVLVDDLLDVAKAEAGQLIPQLAPVDLALLLAQIESVVQPSAPSPEVAVLFPDP 328 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI 730 L + V D L ++ ++SN++ F+S G S L+ G F+V++ G I Sbjct: 329 AGLPTLVTDEMMLTRVLRNLISNSLKFTSSGHVRLSVRCLE--EPPGTVEFTVEDTGIGI 386 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P VF F V AH+ + G GLGL S + L GG +S++S TT+ + Sbjct: 387 PPQEQTKVFEEFHQVRGAHQRGKAGTGLGLPYARSLVILLGGTISLASEVGHGTTVTVTL 446 Query: 789 P 789 P Sbjct: 447 P 447 >gi|126460950|ref|YP_001042064.1| hypothetical protein Rsph17029_0173 [Rhodobacter sphaeroides ATCC 17029] gi|126102614|gb|ABN75292.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029] Length = 520 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L + L+ + + ++W G+++WAN +Y + K + R Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297 L R+ +A + +E G ++ + + + G A+ V Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255 Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357 E T+ D + + +L + +AIFDQ+R L N + ++L + LA PS LE Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315 Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415 LR +PE ++ +W+ I + K++ + + +TW LP+GQT VI +P G M Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375 Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 FE+++ ++ +Y +++ +D + + +AVF P G + ++N A+ +LW Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427 >gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 743 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 26/254 (10%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL K + L A + K+ F+ ++S+ELR+PL +++ LL +K G+L+ KQ +Y Sbjct: 17 AQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLSDKQMEYA 76 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669 I +S LL L+NDILDL+ V+AG M++N + L DL+ V+Q T ENN+ Sbjct: 77 RTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDDEENNLAF 136 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG------------STVILKAARDN 716 +V ++ + D RL QI + +LSNA F+ +G T + + R++ Sbjct: 137 QVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQGDIKLMVQRLELPPTPLEEGRRED 196 Query: 717 ----GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 GD SV + G IP+D K +F F R G GLGLSI Sbjct: 197 WLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGLGLSISRQL 256 Query: 765 INLHGGHVSISSSD 778 L GG + + S + Sbjct: 257 ARLLGGDLQLYSEE 270 >gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 561 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N LR+ ++ K+ F+ +S+ELR+PLT+II F ++L+ + K+ + + I Sbjct: 311 LEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKC-PKEQKITQEIR 369 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+S +LL ++N+IL++A ++AG +L I L D++N V+ I + + +I+ + Sbjct: 370 ANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLH 429 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732 + DR+ L +I +LSNA+ F+ +G + + A D + + +V++NG I + Sbjct: 430 SDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRK 489 Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 + +F +FV S+ HR Q G GLGL++ + LHGG + + S D+G Sbjct: 490 EDQPYIFEKFVQSDSSIHR-QYNGSGLGLALAKELAELHGGWIKVVSELDKG 540 >gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 616 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 133/229 (58%), Gaps = 13/229 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++++K++F+ ++S+E+R+PL I+GF+ ++ ++ N+++ QY + + ++ L Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+N+ILDL+ +++G+M+ NY+ + L L +VK + + + ++++ + S V Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR RL Q+FS ++ NA F++KGS ++ + +F V + GS I +D +F+ Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGSISFGYKLKEK-EIVFHVADTGSGISDDKIDKIFD 422 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF+ Q +G GLGLSI + + GG +++ S E TT +P Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] Length = 885 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 136/248 (54%), Gaps = 7/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD +R L E +D++K++F+ ++S+E+R+PL IIGF+ ++ S+ Sbjct: 487 DITDMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIIGFSRIIAESE---NT 543 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y + A++ LL L+N+ILDL+ ++AGI++ + + + L L E+ + + Sbjct: 544 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCP 603 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + I SD + +D+ R+ Q+ S ++ NA F++ GS + ++ + IF V Sbjct: 604 SDVELIFEPSDEDI-RIDSDKNRIFQVISNLIGNAFKFTTHGS-ISYGYHQEGENIIFHV 661 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G+ I + VF RFV + Q G GLGL+I ++ I GG +S++S E TT Sbjct: 662 TDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGLAICKTIIERLGGTISVTSELEKGTT 719 Query: 784 INCRIPSK 791 +P+K Sbjct: 720 FTFNLPAK 727 >gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 909 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 15/269 (5%) Query: 533 LPNAQTM-LTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 LPN + LTFV ++TD + AE+AL E E KA + K+ F+ +S+E+R+PL I Sbjct: 487 LPNRTSKDLTFVFVCTDITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAI 546 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG TD+L S L +QSQ V + + LL L+NDILD++ ++A ++L L Sbjct: 547 IGITDILAES---DLKPEQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDL 603 Query: 648 NDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + + K E +++ + + + + D RL QI ++ NA+ F+ + Sbjct: 604 ESTTTNICDILKQKATEKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQE 663 Query: 705 GS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 G V+L + F+ F++++ G+ IP+D +F FV R+ G GLGL+I Sbjct: 664 GEIAVLLDFDSSSQKFVRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTI 723 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + L GG + S + ++ +P Sbjct: 724 SKNLVELMGGRIWFQSEEGSGSSFYFTVP 752 >gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1208 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E EA A +K+SF+ ++S+E+R+P+ I+G +LL+T++L N +Q +++ +S Sbjct: 546 LVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL---NPQQQDFIKTLS 602 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++NDILD + ++AG M+L + + D + V + +A + + + D Sbjct: 603 QSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLAIQAQTKQVELITTID 662 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSS 729 +LG V D RL QI + ++ NA+ F+ +GS VI L A D + F V + G Sbjct: 663 PQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAEDEASVLVKFEVIDTGIG 722 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + +F F V + + G GLGL+I + ++L G + + SS Sbjct: 723 IDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDIGLESS 772 >gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 461 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 130/243 (53%), Gaps = 14/243 (5%) Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 VTDS R L +KN+ L ++ D +K++F+ +S+ELR+PLT++IG+++++ Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L ++Q +Y+ I LL L+ ILD++ ++AG ++L S + L+ + + Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVAT 307 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + +++ L ADR +L Q + SNA+ F+ G ++ + A G Sbjct: 308 LLPIARKKGLKVSC-DPSPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEVLQG 366 Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + V ++G IPE+ VF+ F V + + G GLGL+IV+SF+ HGG + + Sbjct: 367 ERLAIHVVDSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRV 426 Query: 775 SSS 777 S+ Sbjct: 427 RSA 429 >gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] Length = 1315 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 14/249 (5%) Query: 540 LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VT+ + AER ++ E AL A+E K+ F+ +S+++R+P+ I+G T L Sbjct: 886 LVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TLA 944 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ LG + + + Y++ I SS LL+L+NDILD++ ++ + LN S + + LL+++ Sbjct: 945 SAYLGD-DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQLS 1003 Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 I ++ E + + + ++G F D R+ QI +LSNA+ F++KG V L A Sbjct: 1004 VMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMVELLAEE 1063 Query: 715 DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + + F+V++ G +PE+ +F F + + G GLGLSI + I+L Sbjct: 1064 VETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHIEGTGLGLSITKGLIDL 1123 Query: 768 HGGHVSISS 776 GG +S+ S Sbjct: 1124 MGGKISVES 1132 >gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] Length = 771 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 124/514 (24%), Positives = 218/514 (42%), Gaps = 81/514 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685 LD +++ G ++L+ + L ++N+V ++ + I + V + LG+ + D + Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 641 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 17/248 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EA +A K++F+ H+S+E+R+PL+ I+G+TDL++ S + +E I AS Sbjct: 376 DQAEAAHRA---KSAFLAHMSHEVRTPLSAILGYTDLIRLDLTRRGQSVYQEELEAIHAS 432 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL ++N+ILDL+ +DAG M L + L++ V Q+ N + VI Sbjct: 433 AQHLLTMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARNGNSLTVIRAPD 492 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVK 724 +D+ ++ Q+ +LSNA F+ G+ + +KA D D+I F + Sbjct: 493 ADLMTSDKTKIRQVLLNLLSNAAKFTENGAISLRIWRELSLSPAMKAIDDGADWIVFEIA 552 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +F F + +A + G GLGL+I F L GG ++++S+ T Sbjct: 553 DTGIGIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGGDITVASAPGKGT 612 Query: 783 TINCRIPS 790 T R+P+ Sbjct: 613 TFTVRLPA 620 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 545 VTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 V + +R + AL E+ N L KA +K+ F+ ++S+ELR+PLT IIGF++ L G+L Sbjct: 213 VEERLRQQSALLEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALG 272 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + V+++ + LL L+NDILDLA + AG + L ++++D EV + Sbjct: 273 DAQQRAVQHVFDNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQ 332 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721 + + S AD R+ QI +LSNA F+ +G + L+ D + F Sbjct: 333 SKKQQFTYTACEAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQF 392 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + ++G I + +F FV R R G GLGL++V + LHGG + + S Sbjct: 393 CIWDHGIGIAANQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVES 449 >gi|28898650|ref|NP_798255.1| hypothetical protein VP1876 [Vibrio parahaemolyticus RIMD 2210633] gi|260364916|ref|ZP_05777487.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030] gi|260879684|ref|ZP_05892039.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034] gi|260898843|ref|ZP_05907284.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466] gi|28806868|dbj|BAC60139.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086698|gb|EFO36393.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466] gi|308093405|gb|EFO43100.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034] gi|308111679|gb|EFO49219.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030] Length = 566 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G DLL ++LG Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSADLLSKTQLGE---DQRQYLGN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S +L ++ND+LD + ++AG+M++ +DL + A K E I + Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG + D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422 Query: 788 IPSKE 792 IP KE Sbjct: 423 IPLKE 427 >gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] Length = 1576 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 126/258 (48%), Gaps = 16/258 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TD + E+ L + +A + K+ F+ + S+E+R+PL I+G T LL SL Sbjct: 807 NITDRLAFEQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 863 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + V+ I S LL +VND+LDL+ ++A M L + L + L EV +T+ Sbjct: 864 ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAE 923 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713 N+ K+ L +V AD RL QI + +LSNA+ F+S G I K A Sbjct: 924 AKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALHAEVIDKFIWKGA 983 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 N FS+ + G I E+ K +F F RR G GLGLSIV + L G Sbjct: 984 EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGK 1042 Query: 772 VSISSSDEGVTTINCRIP 789 + + SS+ +T +P Sbjct: 1043 IGVESSEGQGSTFWTEMP 1060 >gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] Length = 586 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 6/218 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +R+ ++++ FV +VS+EL++PLT+IIGF D LK + ++ + +++ IS S L Sbjct: 346 IRRLEQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADTAR-HFLDIISIESGRLY 404 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ DIL L+++++ +N S + L ++ +V Q + K + + ++ + L F Sbjct: 405 RLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLPPFA 464 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +R R+ Q+ I+ NA+ ++ GS VI + + V + G IP D VF R Sbjct: 465 CNRDRISQMLINIIENAVKYTEHGS-VITTIEKRGDNLKICVSDTGIGIPADQLDRVFER 523 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 F +G+ R G GLGLSIV+ + L+ G VS+SS Sbjct: 524 FY-RVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSS 560 >gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 762 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 135/254 (53%), Gaps = 18/254 (7%) Query: 552 ERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGF--TDLLKTSKLGSL 602 E+ + E E LR + + K+ F+ ++S+EL +PLT +IG T L + + SL Sbjct: 362 EKRVFECTEELRSSIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSL 421 Query: 603 NS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + KQ +Y+E I + L++L+NDILD +++ +G +LN L ++N V + A++ Sbjct: 422 SPEKQRKYIESIQKNGKKLMDLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASE 481 Query: 662 MHENNIRIKVISDGKL----GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + +I +I D ++ F ADR+R+ QI S ++SNA+ F+ V L+ R+ Sbjct: 482 AQKKSI--DLILDFQVQKEENDFYADRERIKQILSHLISNAIKFTPDQGKVTLRIWREKS 539 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F V++ G I ++ +F +F + A + G GLGL++ + + LH G + + Sbjct: 540 QVFFQVEDTGIGISQEQLPLLFEKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVE 599 Query: 776 SSDEGVTTINCRIP 789 S+ E + RIP Sbjct: 600 STPEQGSLFTVRIP 613 >gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.] Length = 701 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 127/234 (54%), Gaps = 3/234 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E AD IK +F+ +S+ELR+PL +IIGFT ++ G LN +Q + + + +SS Sbjct: 464 ERAESADRIKPAFLATMSHELRTPLNSIIGFTGIMLQELAGPLNEEQRKQLTMVQSSSRH 523 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+L+ND+LD++ ++AG ++L+ ++ L + ++ + + + + ++V + + Sbjct: 524 LLSLINDVLDISKIEAGQLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINT 583 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D++RL Q+ +L+NA+ F+ KG V + +N ++ SV + G+ I + +F Sbjct: 584 AATDQRRLEQVVLNLLNNAVKFTEKG-YVHISCRIENDKYLLSVSDTGTGIRPEELSGLF 642 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F + + G GLGLSI + +++ GG + + S +T R P K Sbjct: 643 QPFHQIDTGLTRKYEGTGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFPGK 696 >gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 593 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 132/250 (52%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V +V R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + + S Sbjct: 344 HVRGAVAVLRDMTEE----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASTE 398 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + + I S + LVND+LDLA +++G L+Y T+ L++ L ++ + + Sbjct: 399 EEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAK 458 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E + + V D ++ Q+F+ ++ NA+ + G +V + A + Sbjct: 459 EKGVSLTEDIAVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDGLKIDI 518 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K++GS IPE+ +F RF A R G GLGL+IV++ + HGG +++ SS + Sbjct: 519 KDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKG 578 Query: 782 TTINCRIPSK 791 T IP+K Sbjct: 579 TAFTFYIPTK 588 >gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] Length = 420 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 5/231 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNL 623 A++ K+ F+ ++S+ELR+PL I GF++++ G L ++ + Y I S LL+L Sbjct: 170 ANQAKSEFLANMSHELRTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHLLSL 229 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +NDILD+A ++AG + L+Y + L+ L E + + K E + + + L AD Sbjct: 230 INDILDMAKIEAGKLTLHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HIEAD 288 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 ++ L Q+ ++SNA+ F+ +G V +K A RD SV + G I + + F Sbjct: 289 QRGLKQVLLNLISNAVKFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLAQPF 348 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V H +G GLGL++ +S I LHGG ++I S TT+ +P++ Sbjct: 349 EQVEGQHSKSTQGTGLGLALTKSLIELHGGAMTIESEPGRGTTVWFDLPTR 399 >gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 909 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 13/226 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + LR+A+E K+ F+ ++S+E+R+P+ I+G T+LL ++L +Q++YV + Sbjct: 380 QELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQL---TPEQAEYVRICRGAGDT 436 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 LL L+NDILDL+ V++G M+L + L +L+ + + +A + H+ + + I G Sbjct: 437 LLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLELVCHIFPGVPS 496 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732 V D RL QI ++ NA+ F+ +G ++L+ RD G F+V + G I Sbjct: 497 QVVGDPGRLQQILINLMGNAVKFTERGE-IVLQVERDPDQPGEAGAIRFAVSDTGIGIAA 555 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 D + +F RF RR G GLGL+I + + G + + S Sbjct: 556 DKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVES 601 >gi|78046879|ref|YP_363054.1| putative two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924816|ref|ZP_08186251.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] gi|78035309|emb|CAJ22954.1| putative two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544746|gb|EGD16094.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] Length = 291 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR+ E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + + + D Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDVGTTTLIFED 162 Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ +G + + F V + G IP + Sbjct: 163 PPVLPLLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVHDTGIGIPAE 222 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 267 >gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 797 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 45/396 (11%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 +++ QV E K L+ ++ + +G+ +GR+ + NPA + + + L Sbjct: 419 DISEQVQAEGKLRNLIDQSNSILESVGDGIYGLDLEGRVTVVNPAAAQMLGYKPHELLG- 477 Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSV---LEYSIIP 532 RN+ + D + D +++ + E+ D +EY P Sbjct: 478 ---RNMHEVIHHTRADGSAHDFHDCAVMRAIDALDTMRVSDEVFWRKDGTCFPVEYVARP 534 Query: 533 LPNAQTMLTFVNVTDSVRAERAL---------TEKNEALRKADEIKNSFVQHVSYELRSP 583 A D +R RA+ TE+ R+ D +K+ F+ VS+ELR+P Sbjct: 535 QIEASE--------DGIRPGRAVGVVVAFADTTER----RQLDRMKDEFISTVSHELRTP 582 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 LT++ L+ L + K Q ++ A++ L+ LVNDILD+ + +G +L Sbjct: 583 LTSLRAALGLVTGGALATRPDKMKQMLQIAIANTDRLVRLVNDILDIERIGSGSSELRPV 642 Query: 644 TIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 DLL ATK+H+ +N+R +V S+ AD R+LQ S ++SNA Sbjct: 643 MSAAEDLLER-----ATKIHQGATFKHNVRFRVESNDV--RVWADPDRILQALSNLISNA 695 Query: 699 MDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + FS + L A D + F + + G IP+D +++F RF V + G G Sbjct: 696 IKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFERFQQVDASDTRAMGGTG 755 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL+I S I HGG + SS T + +P+K Sbjct: 756 LGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTK 791 >gi|186683169|ref|YP_001866365.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465621|gb|ACC81422.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1118 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 16/251 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + + L KN L + + +K+ F+ +S+EL++PLT ++G + LL +LG LN Sbjct: 364 DVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELN 423 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVK---- 655 +Q++Y I S L+++VNDILDL ++ G M L + + V + L+E K Sbjct: 424 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMDLTLTPVKISAVCDRALSEAKAIHT 483 Query: 656 --QSIATKMHENN----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ EN+ + + + L VAD RL Q+ +LSNA F+ + Sbjct: 484 QTTKTTSQTQENDRSSAPQFCLSIELGLDEMVADELRLRQMLVHLLSNAFKFTEISGEIG 543 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 L+ +R G F++ + G IPE +F +F + N Q G GLGL + + L Sbjct: 544 LRVSRWEGWIAFTIWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARL 603 Query: 768 HGGHVSISSSD 778 HGG VS S + Sbjct: 604 HGGDVSFLSRE 614 >gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1340 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE AL EA A+ K+ F+ +S+E+R+P+ I+G DLL + L N Q +YV Sbjct: 696 AETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSETPL---NEDQREYV 752 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + LL+L+ND+LDL+ ++AG + L+ LNDL+ + +A + E N+ + Sbjct: 753 QIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRASEKNLELA 812 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVK 724 I S V D RL Q+ +L NA+ F+ +G V+L+ RD G +F+V+ Sbjct: 813 YQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEGE-VVLRVERDPQADGPGTILFTVR 871 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP D ++F RF V ++ G GLGL+I + GG + + S Sbjct: 872 DTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWVDS 925 >gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 661 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 32/371 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 + + GV GR+ NP L W + P + N+ +E+ G Sbjct: 39 LQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLNLV-------DEASGR 91 Query: 498 DLFAAII-TSFDDERKSLQGTLELLSDSVLEY----SIIPLPNAQTMLTFVNV-TDSVRA 551 L A + D E G L L S Y ++ P+ + ++ V V D++R Sbjct: 92 PLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSGIIGCVFVFRDTIRE 151 Query: 552 ---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R L E +A + K+ F+ +S+E+R+PLT I+G DLL + LG ++Q Q Sbjct: 152 REIQRNLLSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLG---AEQRQ 208 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YV A+ LL+L+N ILDL+ ++AG +++ L+ LL + + +A + H+ + Sbjct: 209 YVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAHQKGLE 268 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFI 720 + V D R+ QI ++ NA+ F+ +G V ++A R +N F Sbjct: 269 FTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERGK-VTVEAVRWPAEESAENTWFG 327 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F V + G IP D + VF F RR G GLGL+I + + GG + ++S + Sbjct: 328 FVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTIRLASRE 387 Query: 779 EGVTTINCRIP 789 + IP Sbjct: 388 GEGSRFTVEIP 398 >gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 875 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 16/253 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592 LT NV ER + ++ E LR A D K+ F+ +S+ELR+PL IIGF+ Sbjct: 592 LTIENVQLYNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFST 651 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L L Q + V+ I+ + LL+L+N++LDLA ++AG + L ++ L + Sbjct: 652 VLLDDTEQPLTPTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTA 711 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STV 708 EV ++ T + + ++ L VAD RL QI +LSNA+ F+ +G S Sbjct: 712 EVCDTVQTLLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTERGTITVSAQ 771 Query: 709 ILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763 +L ++G SV + G IP + + +F FV + R + G GLGL+I Sbjct: 772 VLDEVNEDGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQIHGRRSRLGGTGLGLAITRK 831 Query: 764 FINLHGGHVSISS 776 + GG + + S Sbjct: 832 LVEAQGGRIWVDS 844 >gi|260575777|ref|ZP_05843773.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2] gi|259021930|gb|EEW25230.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2] Length = 526 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 37/373 (9%) Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE----IKKRMISSSALE 259 ++W +GD+ WAN +Y S+KL + R+ +A+ Sbjct: 168 LMIWREAASGDVTWANATYLDQA-------------SQKLEPGQDLSWPLPRLFERTAVA 214 Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAID--VSKEITVNDQLTHTYEILH 313 + L+ ++ + + GE G+ D V E ++ D + + Sbjct: 215 QGVNGQRQRLDQPTGPAHWYDLIGFAEGEGRLMFGLPADAAVQAETSLRDFMQTLTKTFA 274 Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373 +L + +AIFD+ R LQ N + ++L + FL+ P+ L+ +R N +PE +++ Sbjct: 275 HLPIGLAIFDRQRQLQLFNPALLDLSGLQPDFLSLRPTLFAFLDAMRDRNMIPEPKDYRF 334 Query: 374 WKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431 W++ + + K SS +++TW LP+GQT VI +P G MFE+++ ++ +Y Sbjct: 335 WRKQMTELEKAASSGLYEETWSLPSGQTYRVIGRPHPNGALALMFEDISTEMSRTRRYRA 394 Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSR 489 +++ +D + +G+AVF G + +SN A+ LW + P + + +A C+ Sbjct: 395 DLELGQAVVDAMDQGLAVFSESGVLVMSNTAYTELWGHD-----PASTLGESGVATLCAH 449 Query: 490 YYNESDG---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNV 545 + S W I + ERK+ G L +L+ P+ T+ TF + Sbjct: 450 WRENSAPSPIWSEVEDFIATM-GERKAWGGEARLNDGRLLDCRFTPIQGGSTLATFRLAA 508 Query: 546 TDSVRAERALTEK 558 + R+ R K Sbjct: 509 PEKARSPRLAASK 521 >gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii Ech703] gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703] Length = 934 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 130/252 (51%), Gaps = 6/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++V+ VR E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 422 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK--- 478 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL+ ++ VE + SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 479 SLSRDANRLVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLP 538 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + S + D RL Q+ S +LSNA+ F+ G V+ R +G Sbjct: 539 LVVKKRLTLYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQVQRRHDGYL 598 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G I +F+ F QR +G GLGL+I E ++L G +SI S Sbjct: 599 AFQVRDTGVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESE 658 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 659 PGLGSLFGVRIP 670 >gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 891 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 15/273 (5%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586 P + V V D+ RAE+A E+ +AL + A+ K+ F+ +S+++R+P+ Sbjct: 339 PFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASAKAANRAKSDFLSRMSHDIRTPMNA 398 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 IIG + + + KLG S Q + + I ASS LL+L+NDILD++ ++ G M+L+ Sbjct: 399 IIGMSTIGQL-KLGDDRSVQDCFRK-IDASSRYLLSLINDILDMSKIETGKMELSQEYFD 456 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705 +L+ E+ Q + + E IR ++ + L +V D R+ QI +LSNA+ F+S Sbjct: 457 FAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYYVGDSLRVKQILLNLLSNALKFTSAD 516 Query: 706 STV---ILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 + I + R NG +I F V+++G + ++ +F F + R G GLGL Sbjct: 517 GLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFRSRIFQPFEQESPEAARNNVGSGLGL 576 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SIV + + L GG + + S IP K Sbjct: 577 SIVYNLVQLMGGTIEVESEKNKGAAFTVTIPLK 609 >gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] Length = 997 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 133/248 (53%), Gaps = 7/248 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + E L E +++ +K++F+ ++S+E+R+PL I+GF+ +L + Sbjct: 613 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADA---EEPE 669 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +Y+ I ++T+LL LV DILDL+ +++G ++ YS I LN L E+++S + Sbjct: 670 EKEEYINIIENNNTLLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQKN 729 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723 + + I+ + + ++ RL Q+ + +++NAM F+ GS + N DF+ F + Sbjct: 730 DAVVIRYLPEMPDCFVNIEKNRLTQVVTNMMNNAMKFTPSGS-ITFGYHLKNTDFLYFYI 788 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G I +D +VF RFV Q G GLGLSI +S + GG + + S +T Sbjct: 789 TDTGYGIEKDKKDTVFGRFVKLDSFSQ--GTGLGLSICQSIVENLGGEIGVESEPGKGST 846 Query: 784 INCRIPSK 791 +P + Sbjct: 847 FWFTLPYR 854 >gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 510 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 11/248 (4%) Query: 539 MLTFVNVTDSVRAERALTEK--NEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL 593 ML F D + AE + + +EA R+A+E K+ F+ +S+ELR+PL I+GF+++ Sbjct: 226 MLGFQTEKDDLIAELEVAKSVSDEARRRAEESNLAKSRFLASMSHELRTPLNAILGFSEV 285 Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + LG + N +YV I S LLNL+N+ILDL+ ++AG LN S + L+D+ Sbjct: 286 MSGEVLGPVGNESYKEYVGDIHRSGQHLLNLINEILDLSRIEAGRYDLNESALALSDIAQ 345 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + I K +I I + L AD + + Q+ +LSNA+ F+ G + +K Sbjct: 346 DCIGLIQLKARSKSITINEAFEEDLPMVWADEKSIRQVVLNLLSNAVKFTPSGGEIRVKL 405 Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 G +I ++K+NG I E+ V + F S A + +G GLGL IV++ + H Sbjct: 406 GWTAGGGQYI-AIKDNGPGIAEEEIPVVLSAFGQGSVAIKSAEQGTGLGLPIVQAILAKH 464 Query: 769 GGHVSISS 776 GG + S Sbjct: 465 GGEFVLKS 472 >gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 514 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQS 607 E+A +EA R+A+E K+ F+ +S+ELR+PL I+GF+++LK G + Sbjct: 241 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKNELFGVHAVAAYK 300 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I +S LL L+N+ILDL+ V+AG +L ++ L ++ + + + + + I Sbjct: 301 DYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLATMVEDCRHLLTIRAQKRGI 360 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 + +++ L AD + + QI +L+NA+ F+ +G V LK G ++ ++++ Sbjct: 361 EMIEMTEPDLPRLWADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYV-AIRD 419 Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 G IPE+ V + F A + G GLGL IV+ I+LHGG ++S EG Sbjct: 420 TGPGIPEEEIAVVMSSFGRGTLAQKNAEEGTGLGLPIVKGLIDLHGGLFKLASKVREGTE 479 Query: 783 TINCRIPSK 791 I P + Sbjct: 480 AIVVFPPER 488 >gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 796 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 140/260 (53%), Gaps = 11/260 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V+VT+ AE A+ +A A+ K+ F+ ++S+ELR+PL+ +IG++++L Sbjct: 247 TCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSEMLGEELED 306 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + I A++ LL+L+ND+LD++ ++AG M + T ++DLL +V S + Sbjct: 307 IGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSDSTGS 366 Query: 661 KMHENNIRIKVISDGK-----LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714 + + R V+ G LGS D+ ++ Q ++ NA F+ +G+ T+ ++ R Sbjct: 367 LVEKKGNRF-VLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTERGTITLTVRRHR 425 Query: 715 DNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + G D++ F+V + G + E+ +F RFV R+ G GLGL+I +F GG Sbjct: 426 EEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCRTMGG 485 Query: 771 HVSISSSDEGVTTINCRIPS 790 + ++S+ T R+P+ Sbjct: 486 DIGVASTPGAGATFTIRLPA 505 >gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1955 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 14/260 (5%) Query: 529 SIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 ++ P+ M V VTD + E L + E A E K +F+ ++S+ELRSPL Sbjct: 1453 AVKPIYIGDQMFHLVRVTDISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLN 1512 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+GF+ LLK + SL+ +++ E I S LLNL+N +LDLA ++A + + + + Sbjct: 1513 AILGFSRLLKNNSQISLDERKN--AEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDL 1570 Query: 646 VLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L+ L++++ K E N ++ SD S D +L Q+F +LSNA+ F+ Sbjct: 1571 NLDQLIDDIYNMFYLKAQEQGLNFNVQKTSDVPC-SICTDEIKLRQVFINLLSNALKFTK 1629 Query: 704 KGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLG 757 +G +V K + +N F V++ G I + +F F S A + + G GLG Sbjct: 1630 RGFITLNISVKSKKSDNNVMLNFEVEDTGVGIAPEEQTDIFEAFNQSQAGKQVKEGTGLG 1689 Query: 758 LSIVESFINLHGGHVSISSS 777 L+I FI L GG +S+ S Sbjct: 1690 LAISREFIKLMGGEISVESQ 1709 >gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] Length = 817 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 138/248 (55%), Gaps = 7/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +R L E +D++K++F+ ++S+E+R+PL I+GF+ ++ S+ Sbjct: 416 DITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAESE---NT 472 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y + A++ LL L+N+ILDL+ ++AGI++ + + + L+ L E+ + + Sbjct: 473 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRC- 531 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ ++ + +D+ R+ Q+ S ++ NA F++KGS + R+ +F V Sbjct: 532 PSDVELRFDPSDEDILIDSDKNRIFQVISNLIGNAFKFTTKGS-ISYGYHREGETIVFHV 590 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G+ I + VF RFV + Q G GLGL+I ++ I GG +S++S E TT Sbjct: 591 TDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGLAICKTIIERLGGKISVTSELEKGTT 648 Query: 784 INCRIPSK 791 +P+K Sbjct: 649 FIFTLPAK 656 >gi|163794992|ref|ZP_02188961.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179811|gb|EDP64338.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 417 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+ +K F+ +S+ELR+PL IIGF ++L G+L KQ +Y I A+S LL Sbjct: 167 REAERVKADFMARMSHELRTPLNAIIGFGEMLSAGIGGTLVGKQLEYCASIQAASAQLLE 226 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKV-ISDGKLGS 679 + DILDL + AG D L + +Q +A+ E + +R V S+ G Sbjct: 227 QITDILDLEHLSAG-----------ADALAQERQDLASVCTEVIDRLRSTVQASEVPAGM 275 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 V ADR+ L I + ++SNA+ +S KG++V+++A D + V + G + + Sbjct: 276 QVWADRRSLATILNSLISNALKYSPKGTSVVIRAEHDADGTLIRVVDRGYGVGASDLSRI 335 Query: 739 FNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F F +R R G GLGLS+V +N HGG + S TT+ +P++E Sbjct: 336 FEPF----YRAHERELPAVGGSGLGLSLVRMLVNAHGGRLDFESRLNEGTTVTVWLPAEE 391 >gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 616 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 13/229 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++++K++F+ ++S+E+R+PL I+GF+ ++ ++ N+++ QY + + ++ L Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+N+ILDL+ +++G+M+ NY+ + L L +VK + + + ++++ + S V Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR RL Q+FS ++ NA F++KGS + + +F + + GS I +D +F+ Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFD 422 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF+ Q +G GLGLSI + + GG +++ S E TT +P Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855] gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 616 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 13/229 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++++K++F+ ++S+E+R+PL I+GF+ ++ ++ N+++ QY + + ++ L Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+N+ILDL+ +++G+M+ NY+ + L L +VK + + + ++++ + S V Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR RL Q+FS ++ NA F++KGS + + +F + + GS I +D +F+ Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFD 422 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF+ Q +G GLGLSI + + GG +++ S E TT +P Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469 >gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 622 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L +Q+ Y+ Sbjct: 382 EEDLISAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 438 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E I + Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLD 498 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 D F DR RL QI +L+NA+ + KGS D G + F V + G Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCG 555 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGLGL+I + + GG++S+ S + +T +P Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 613 Query: 790 SK 791 K Sbjct: 614 MK 615 >gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC 43184] Length = 794 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + + ++D +K++F+ ++S+E+R+PL I+GF++LL + ++++Y+ Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLT---MAEDEEERNEYIN 465 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS+++ +LL L+NDILD+A ++AG ++ S I +N LL++++QS K E ++I Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQISF 524 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + ++D+ RL Q+ + ++NA+ F+ +GS +D+ + V++ G I Sbjct: 525 VEKMPYCIIMSDKNRLAQVITNFINNAIKFTKEGSIRFGYRHKDD-KLLLYVRDTGCGIE 583 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + VFNRFV Q G GLGL+I + + GG + + S Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIVKKMGGEIGVES 626 >gi|325914837|ref|ZP_08177172.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325538928|gb|EGD10589.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 291 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR+ E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNTEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ L +V+D+LDLA ++AG + ++ L DL ++ + + + + D Sbjct: 104 ASTRELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDVGTTTLIFED 162 Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ +G +L FSV++ G I + Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVLAQLEGTDHVRFSVQDTGIGIAPE 222 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + ++F FV Q+R G GLGLSI + F L GG V I+S Sbjct: 223 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 267 >gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] Length = 509 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 136/235 (57%), Gaps = 8/235 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +S+ A++ L KN+ L + + KN F+ ++S+E+R+PLT I+GF++LLK + +LN +Q Sbjct: 112 ESIIAKQMLVLKNQQLEQQNRFKNKFLANISHEIRTPLTAIVGFSELLKKT---NLNFEQ 168 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ I+ +S L +ND+LD+A ++ G +K++ I L +++ ++ + K Sbjct: 169 LGLLDVITNASEQLTATINDMLDIAKIELGELKISNEEINLKEVILDIAKVYKEKAKSKG 228 Query: 667 IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---F 721 I V D + L + + D+ R+ Q+ +L NA+ F++ G+ ++++K + + I F Sbjct: 229 INFSVEYDEEILSNTIGDKLRIQQVLGNLLENAIKFTNVGNVSLVVKKSFQRANKIGVDF 288 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPED +SVF F +++G GLGL+I ++ + G + + S Sbjct: 289 YVEDTGQGIPEDHLRSVFESFHQVNASEKQKGTGLGLAITKTLVEALEGKIQVES 343 >gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 843 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 14/249 (5%) Query: 540 LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VT+ + AER ++ E AL A+E K+ F+ +S+++R+P+ I+G T L Sbjct: 414 LVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TLA 472 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ LG + + + Y++ I SS LL+L+NDILD++ ++ + LN S + + LL+++ Sbjct: 473 SAYLGD-DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQLS 531 Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 I ++ E + + + ++G F D R+ QI +LSNA+ F++KG V L A Sbjct: 532 VMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMVELLAEE 591 Query: 715 DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + + F+V++ G +PE+ +F F + + G GLGLSI + I+L Sbjct: 592 VETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHIEGTGLGLSITKGLIDL 651 Query: 768 HGGHVSISS 776 GG +S+ S Sbjct: 652 MGGKISVES 660 >gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] Length = 652 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 100/378 (26%), Positives = 187/378 (49%), Gaps = 25/378 (6%) Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464 + NP+ + N+T Q + ET+ + + + + I L E + +F D L++ Sbjct: 140 SGNPKSLLCYTV-NVTGQCERETRISRMEERNRKIIQALPEFIFIF--DENFFLTD---- 192 Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-- 520 L ++ L P +R R + DLF I D E K ++ L++ Sbjct: 193 VLMSSDTILLHPVEQLRGADG---RTIYSPEVSDLFLRNIRQCLEDGELKEIEYPLDVDD 249 Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 + I P + + M ++ D V+ L E + +AD +K+ F+ ++S+E+ Sbjct: 250 CERHYFQARIAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEI 309 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL I+GF++++ L ++++Y+ I +S +LL L+NDILDL+ +++G ++ Sbjct: 310 RTPLNAIVGFSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEM 366 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N+ + + L++EV++ KM + IR+ VI + + DR R+ Q+ LSNA+ Sbjct: 367 NFQLVEMTGLIDEVEKVHRLKM-KTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIK 425 Query: 701 FSSKGS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + +G+ T+ L+ G+++ V + G I ++ +FNRF Q G GLGL Sbjct: 426 NTHEGTITLGLEVC---GEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ--GTGLGL 480 Query: 759 SIVESFINLHGGHVSISS 776 I +S + GG +S+ S Sbjct: 481 PICQSIVERLGGKISVES 498 >gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492] gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492] gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 5/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611 + L NE +++++KN+F+ ++++E+R+PL I+GFT +L +++ +L+ + + +++ Sbjct: 50 KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDNLDRETRMAFLK 107 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + LL LVND+LD + ++A ++ N + +N L++EV + + H I+++ Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + V DR R Q+ ++ NA+ F+ GS I N +F F V + G I Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 E ++F RFV + +G GLGLSI +S + +GG + + S +T +P+ Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284 >gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 878 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD +KN F+ +S+ELR+P+T I GFT LL LG LN Q ++V I +++ ++NL Sbjct: 629 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQLNDTQREFVNTIYSNTERMINL 688 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+L++ +++G + L + ++ L + L+ V + ++ ++ ++ + L AD Sbjct: 689 INDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRHQLTISIPPGLPLIRAD 748 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------------DNGDF-IFSVKNNG 727 RL QI +L NA+ ++ G ++ + A DN + + S+ + G Sbjct: 749 AMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRSTLSDNRRYLLLSISDTG 808 Query: 728 SSI-PEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I PED+ + +F+RF N + + G GLGLSIV+ + L GG + + S+ Sbjct: 809 VGIRPEDLPR-IFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLGGRIWVEST 860 >gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 788 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 11/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +R E L ++ A+E K+ F+ ++S+ELR+P + I+G LL+ + L+ Sbjct: 388 DVTAQIRMEEGLIAAKKSAESANEAKSEFLANMSHELRTPFSGIMGMMRLLQGT---GLD 444 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV +S L+ D+LD++ ++AG + ++ +DL + V + A Sbjct: 445 DEQRRYVCLAIKASDRFTRLLTDLLDISRIEAGKLDIHEQEFSTSDLHDSVMEIFALASQ 504 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDF 719 E I ++ D + + V D R+ QI ++ NA+ F+ KG +IL + D Sbjct: 505 EKGISLEFFIDPSVPARLVGDEMRVRQILFNLVGNAIKFTEKGCVCVEIILLSPVKGADL 564 Query: 720 --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775 +F+V + G IP DM +F FV R +G GLGL+IV+ + L GG + Sbjct: 565 RVLFTVSDTGIGIPVDMLSGIFGSFVQVDGASSRAFQGAGLGLAIVKRLVKLMGGQIFAD 624 Query: 776 SSDEGVTTINCRIPSK 791 S + T ++ +P K Sbjct: 625 SIEGEGTNMHVELPFK 640 >gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 1163 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L E+ E L+++ + K+ F+ ++S+ELR+PL + + LL + +L+++Q ++ Sbjct: 475 QAQVQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 534 Query: 610 VEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 E I ++ LLNL+NDILD++ V+AG +M N S L D L + + +A + + Sbjct: 535 AESIYSAGNDLLNLINDILDISKVEAGKLEVMPENTSVARLADGLRGMFEPLAA-VKQLA 593 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +++ D + DRQRL Q+ +LSNA+ F+ G+ + A + + F V+++ Sbjct: 594 FSVQLQPDAP-STLFTDRQRLEQVIKNLLSNAVKFTEHGTVSLTIAGQPDDRIAFIVRDS 652 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I D +S+F F R+ G GLGLSI L GG +S+SS+ Sbjct: 653 GIGIAADQQESIFEAFRQADGTTNRKYGGTGLGLSISRDLATLLGGSISVSSA 705 >gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 294 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 130/239 (54%), Gaps = 5/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611 + L NE +++++KN+F+ ++++E+R+PL I+GFT +L +++ L+ + + +++ Sbjct: 50 KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDDLDRETRMAFLK 107 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + LL LVND+LD + ++A ++ N + +N L++EV + + H I+++ Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + V DR R Q+ ++ NA+ F+ GS I N +F F V + G I Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 E ++F RFV + +G GLGLSI +S + +GG + + S +T +P+ Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284 >gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1084 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L + D +++ F+ VS+ELR+PLT+I F+++L ++ K+ ++V I+ Sbjct: 814 LEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYEVDD-PEKRRKFVAIIA 872 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + + L ++ND+LDL+ ++AG ++L+ + L+ + + M E ++ +V + Sbjct: 873 SEAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIE 932 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPED 733 L +AD R+ Q+ + +LSN++ FS +G T+ L R G+F + SV + G IP D Sbjct: 933 AGLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRL-GGRRQGEFALISVTDQGPGIPAD 991 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF V + G GLGL+I + GG + + S + +P Sbjct: 992 RLEQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVP 1049 >gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] Length = 1184 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 5/231 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L ++ E L+++ + K+ F+ ++S+ELR+PL + + LL + +L+++Q ++ Sbjct: 494 QAQLELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 553 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD++ V+AG +++ + L++ ++ + + Sbjct: 554 AESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAADRKLGF 613 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +V + +G DRQRL QI +LSNA+ F+ +G V L +R G+ I F+V+++G Sbjct: 614 QVDVQEGSPTMLFTDRQRLEQILKNLLSNAIKFTEQGD-VSLSVSRAPGEGIAFTVRDSG 672 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I D +S+F F RR G GLGLSI L GG++S++S Sbjct: 673 IGIAPDQQESIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVAS 723 >gi|260665099|ref|ZP_05865949.1| phosphate regulon sensor kinase PhoR [Lactobacillus jensenii SJ-7A-US] gi|260561153|gb|EEX27127.1| phosphate regulon sensor kinase PhoR [Lactobacillus jensenii SJ-7A-US] Length = 387 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 6/232 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ + K+ + +VS+++R+PLT+IIG+ LLK SL + Q +YV+ + + Sbjct: 148 RQIERSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ D T+++ K+N++ + L +L +V + E NI + V ++ A Sbjct: 206 LANDLFDYTTLNSTKTKVNFAPLHLTSMLEQVAAGFELEAEEKNISLNVNTNPDDLVIDA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ ++SNA+ + S + L A + + + V+NNG +IP+ + +F R Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENNGEAIPKAALQKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V + + G GLGL+IV+ I+LH G ++ S+E +T+ +P K Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKIT-CESNERITSFIIHLPFK 376 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ ++ +++K+ FV VS+ELR+PLT+I G +L + L S + + + ++ Sbjct: 796 RDITER----KQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQGKRLLQI 851 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRI 669 + S+ L+ L+NDILD+ +++G +K+ L DL+N + Q +A K Sbjct: 852 ATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKA--GVSLS 909 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 S+ AD R++Q + + SNA+ FS GSTV L + +V++ G Sbjct: 910 IHNSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRG 969 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +S+F RF V ++ G GLGL+I +S + HGG + + S Sbjct: 970 IPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKS 1018 >gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] Length = 575 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 135/237 (56%), Gaps = 10/237 (4%) Query: 547 DSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLN 603 + ++ +RA E+ NE L++ ++ K F+ VS+ELR+PLT+II F DLL T + G + Sbjct: 312 EQLQEQRAHVERVNERLKRDNQYKTDFLAIVSHELRTPLTSIIAFADLLDTHVPRDGGES 371 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ I + ILL +V+++L+ A + +G +++ I ++DL+ V QS+A Sbjct: 372 RRQ---LDEIEKNGQILLEMVDNVLETARIQSGRDEVSIELIDVSDLVGMVVQSLAPLAS 428 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721 + I + ++ ++D ++L +I S +++NA+ F+ +G +V + ARD G Sbjct: 429 KKGIALTSDVSSEVPLVMSDWEKLRRILSNLVNNAIKFTGEGGSVAVAVARDAEEGFVRI 488 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V++ G IP D + +F RF RR G GLGLS+V+ + GG VS++S Sbjct: 489 EVRDTGIGIPADKHELIFERFTQENMSTARRFGGSGLGLSLVKDLAGILGGDVSLTS 545 >gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1364 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R R L ++ + L +A +K+ F+ ++S+ELR+PL +++ + +L L+ ++ Y Sbjct: 570 RRNRVLDQQKQLLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGAARLSVEERGY 629 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + LL+L+NDILDLA +++G L + + + + EV +A E I + Sbjct: 630 LGIIEKNGKHLLSLINDILDLAKIESGRQDLFFEAVAPDKVAAEVVDGLAVLASEKGITL 689 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + L S V D ++L Q+ ++ NA+ F+++G+ V L+ A+ + +F V++ G Sbjct: 690 ALSAPQALPSMVIDVKKLRQMLQNLVGNAVKFTAEGA-VTLRLAQLGNELLFEVEDTGIG 748 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I S+F F R G GLGL+IV+ L GG V++ S + + R Sbjct: 749 IAPQYLDSIFQEFRQADGSTSRSYEGTGLGLAIVKKSARLLGGEVAVVSELGKGSVFSLR 808 Query: 788 IP 789 +P Sbjct: 809 LP 810 >gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 753 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 15/266 (5%) Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVS 577 D LE + +P L N ++++ + + A + ++ E R A E K+ F+ +S Sbjct: 326 DVWLETNQVPILGNQGGEMSYIAIERDMTAAKQNAQQLEEARLAAEEGGRAKSDFLATMS 385 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+P+ +IG LL+ + L+ Q Y I +S+ LL L+NDILDL+ +DAG Sbjct: 386 HEIRTPMNGVIGMAQLLEET---DLDGDQRLYTNTILSSAKTLLALINDILDLSKLDAGQ 442 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696 + LN L+ L E Q + T+ + ++V D L + V D RL QI + ++ Sbjct: 443 ISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLEVERDVDLPRYLVGDDHRLRQILNNLVG 502 Query: 697 NAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 NA+ F+ KG +V ++ A+D G + ++ + G IP+DM +F RF RR Sbjct: 503 NAIKFTEKGRVKVSVEMEPAQDGGVLLNCAIIDTGIGIPKDMLTGIFERFSQADAAISRR 562 Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I GG ++++S Sbjct: 563 FGGSGLGLAISRRLAEAMGGRITVTS 588 >gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 780 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 25/311 (8%) Query: 485 ATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543 A R++ DG +A+ I+TS DE L+G +++ D T Sbjct: 333 AEDERWHIRKDGSRFWASGILTSLQDE-AGLRGFAKIMRD----------------FTER 375 Query: 544 NVTDSVRAERALTEKNEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + RA+ + E+N + A+ +K+ F+ +S+ELRSPL ++G+ LL T K Sbjct: 376 KQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPLNAMLGWLRLLNTRKFDE 435 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + ++ +E I S+ LV D+LD++ + G ++LN + L ++ ++ Sbjct: 436 KTTAKA--METIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVELVTVIEAALDTVRPA 493 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 IR++ I D G D RL QI +LSNA+ F+ KG V + R N Sbjct: 494 AEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQVQVYLERVNSHVEI 553 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779 SV++ G I D VF+RF R G+G+GL+IV + LHGG V S E Sbjct: 554 SVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLAIVRHLVELHGGSVRAQSEGE 613 Query: 780 GV-TTINCRIP 789 G T ++P Sbjct: 614 GKGATFTIKLP 624 >gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 923 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 138/256 (53%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F +++ +A+ AL+ +A A++ K++F+ +S+E+R+PL ++G +LL + Sbjct: 419 LCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT- 477 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 SL+++QSQY+ I +SS++LL L++D+LD++ +++G + L + +L V +S Sbjct: 478 --SLDARQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSF 535 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 A ++I V +D +L + V D R+ Q+ +LSNA+ F+ G ++ ++ + Sbjct: 536 AASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVMLRVRQVQRE 595 Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 G+ + V + G I + +F F +G GLGLSI + + L G + Sbjct: 596 GESSVLAWQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQ 655 Query: 774 ISSSDEGVTTINCRIP 789 + S ++ + R+P Sbjct: 656 VVSEPGLGSSFSVRLP 671 >gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 791 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 104/393 (26%), Positives = 181/393 (46%), Gaps = 46/393 (11%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 ++T +V E + L +D + +G+ DG + NPA S+ L G Sbjct: 420 DITEKVRAEESLSALTLQSNSILDSVGDGIFATSLDGVATVVNPAAASM-------LGYG 472 Query: 478 TH----------IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----S 522 TH +R A + Y ++ + I +R++++ + +L S Sbjct: 473 THEILGRKISDLLRLTRADGTEYADDE-------SPIERSLHQREAVRASTDLFWRKDGS 525 Query: 523 DSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 +EY P+ + + V TD+ TE+ R D++K+ F+ VS+ELR Sbjct: 526 SFPVEYVACPIVKDGRATGIVVAFTDT-------TER----RALDKMKDEFISTVSHELR 574 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT++ L+ + L S KQ Q +E ++ L++LVNDIL+L + +G +L+ Sbjct: 575 TPLTSMRASLGLIASGALASRPEKQKQMLEIAIGNTERLVSLVNDILELERIGSGKAELH 634 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + +DL + + I+ ++ + G + D R+LQ + +LSNA+ F Sbjct: 635 STLSSADDLFRRATGLLTGTAAKAGIKFEIEARGV--NVWGDPDRILQTITNLLSNAIKF 692 Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 S +G + L+A +GD V ++G IP D +S+F RF V + G GLGL Sbjct: 693 SPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDASDSRAMGGTGLGL 752 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +I S ++ HGGH+ S +T +P+K Sbjct: 753 AICRSIVSQHGGHIWAESKYGRGSTFFFTLPTK 785 >gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1233 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T AE AL + EA A K F+ ++S+E+R+P+ IIG T+L ++L Sbjct: 575 TNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTEL- 633 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 NS+Q +Y+ + +S+ LL ++NDILD + +++G + + L +L E +S+A Sbjct: 634 --NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAV 691 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + H+ + + + ++ + D RL Q+ ++ NA+ F++ G + LK A + Sbjct: 692 RAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQCLKGAPE 751 Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FSV++ G I D +++F F RR G GLGL+I ++L GG + Sbjct: 752 GQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGLTISAQLVSLMGGSI 811 Query: 773 SISS 776 ++ S Sbjct: 812 ALES 815 >gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1162 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L+ K E L ++ K+ F+ ++S+ELR+PL +++ LL+ +K +L+SKQ Y Sbjct: 481 ARQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILARLLEENKDRNLSSKQVDYA 540 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S + LL L+NDILDL+ ++AG +++ + ++ ++++++Q E +I Sbjct: 541 GIIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFS 600 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGS 728 I+ G + DRQRL Q+ +LSNA F+ K + L+ A +G +I +V +NG+ Sbjct: 601 TEIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAADGVYI-AVSDNGT 659 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 IP + + +F F R+ G GLGLSI + + GG + + S + Sbjct: 660 GIPVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRLESKE 711 >gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 490 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 174/382 (45%), Gaps = 31/382 (8%) Query: 431 TLVKVQG----------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 TL+KVQ E ++ +G+ + P G I ++N L+ L G + Sbjct: 117 TLIKVQRDAKLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLR-GRSV 175 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------SDSVLEYSIIPL- 533 + R+ + + F ++++ L+L ++ +E S+ PL Sbjct: 176 DQLLPERYRHAHVAHRSQYF------LQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLR 229 Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 A M ++++ R ERAL EKN L A+E K F+ ++S+ELR+PL IIGFT Sbjct: 230 TEDGAFVMSAIRDISERKRFERALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFT 289 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L G L Q + + + AS LL L+ND+LD+A ++AG +++ + + LL Sbjct: 290 GTLLMRLPGPLTPDQERQLRTVQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALL 349 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +EV ++ + + + + +DR+ L QI ++ NA+ F+ GS + Sbjct: 350 HEVVSTLHPQAVAKGLALTLSVPEPALQCESDRRMLNQIVINLIGNAIKFTDAGSIHVGL 409 Query: 712 AARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 AR G F V + G I +D K F+R VS+ R G GLGL + + L Sbjct: 410 RARAGG-FEIEVTDTGIGIGTDDQAKLFGAFSRVVSSQGR-VAEGTGLGLHLSQKLAALL 467 Query: 769 GGHVSISSSDEGVTTINCRIPS 790 GG + + S + + R+P Sbjct: 468 GGTIDVRSEAGRGSCFSLRVPG 489 >gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] Length = 1586 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 126/257 (49%), Gaps = 14/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TD + E+ L + +A + K+ F+ + S+E+R+PL I+G T LL SL Sbjct: 817 NITDRLAFEQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + V+ I S LL +VND+LDL+ ++A M L + L + L EV +T+ Sbjct: 874 ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAE 933 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718 N+ K+ L +V AD RL QI + +LSNA+ F+S G + D NG Sbjct: 934 AKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRVEVIDKFSWNGA 993 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FS+ + G I E+ K +F F RR G GLGLSIV + L G + Sbjct: 994 EKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKI 1053 Query: 773 SISSSDEGVTTINCRIP 789 + SS+ +T +P Sbjct: 1054 GVESSEGQGSTFWAEMP 1070 >gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 710 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 10/220 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A + K F+ V++E+R+PL IIGF+ L+ T +L + ++ + V+ I +SS ILL L Sbjct: 328 EAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRL---DGQEKESVDAIQSSSRILLTL 384 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682 VND+LD + +++G + L Y D +NEV + E NI I+ I+ G + Sbjct: 385 VNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVCLLG 444 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737 D R+ Q+ +LSNA+ F+ V+++A+ D + VK++G I + K Sbjct: 445 DEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEHLKE 504 Query: 738 VFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F A + G GLGL+I + + LHGG +S+ S Sbjct: 505 IFEDFKQIGAASAGKPGTGLGLAICKRIVELHGGKISVES 544 >gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 970 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +A A++ K++F+ ++S+ELR+P+ IIG++++L + ++ I Sbjct: 464 LEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEAADLEPEEFVPDLQKIQ 523 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+ LL+L+NDILDL+ ++AG M L T L LL+ V +I + +N+ ++V + Sbjct: 524 AAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNTLEVKAP 583 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 LGS AD ++ Q +LSNA F+ +G T+ L R + F V + G + D Sbjct: 584 TDLGSMHADLTKVRQSLFNLLSNACKFTDRG-TITLTVTRQDDAINFKVSDTGIGMTPDQ 642 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F R+ G GLGL+I F + GG++++ S+ TT +P Sbjct: 643 MARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTFTVSLP 699 >gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 507 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 2/243 (0%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++T+ + E AL A+ K+ F+ ++S+ELR+PL IIGF+++L K Sbjct: 263 ILAGEDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIGFSEILIEKK 322 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G LN KQ +Y+ I S LL ++N IL+++ +++G +++NY TI L DL+ ++K+ I Sbjct: 323 FGDLNDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLGDLIEDLKEDI 382 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K+ + + + + + D ++ + ++ NA+ FS K V + + Sbjct: 383 KEKLPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHVEVSLESVDEM 442 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 F V + G I E+ K +F F R G+G+GL I++ LHGG ++I S Sbjct: 443 IAFKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAELHGGGLAIKS 502 Query: 777 SDE 779 E Sbjct: 503 ELE 505 >gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 622 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L +Q+ Y+ Sbjct: 382 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 438 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E I + Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLD 498 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 D F DR RL QI +L+NA+ + KGS D G + F V + G Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCG 555 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGLGL+I + + GG++S+ S + +T +P Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 Query: 790 SK 791 K Sbjct: 614 MK 615 >gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 523 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 3/230 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNL 623 AD+ K+ F+ +S+ELR+PL I+GF++++ G LN ++ S YV+ I S LL+L Sbjct: 280 ADQAKSQFLATMSHELRTPLNAILGFSEIMAAETFGPLNNARYSDYVQDIFKSGKHLLSL 339 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+LD VDAG + L+ I L + + + + I+ + NI + L +AD Sbjct: 340 INDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQAKAQNIALDYEIAADLPHLIAD 399 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 +R+ Q+ +LSNA+ F+ G V + A +G + V + G I + RF Sbjct: 400 HRRIRQVLLNLLSNAVKFTPDGGEVHIGALVADGAMLLRVTDTGIGIAAENIPLALERFG 459 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + + + G GLGL + + + HGG + I+S TT+ P + Sbjct: 460 QIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELGRGTTVTVTFPPE 509 >gi|325681059|ref|ZP_08160591.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324107288|gb|EGC01572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 470 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A E L+ D ++NSF+ +VS+ELR+P+T+I GF D + + S+Q Y+ I Sbjct: 229 AFNEMAANLKSYDTMRNSFLANVSHELRTPMTSIGGFVDGILDGTIPK--SQQGYYLRII 286 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L LV +L+LA ++AG ++ N ++ + + + + + +++E I I+ + Sbjct: 287 SSEVGRLTRLVKSMLNLAKIEAGELEPNKTSFAVTEPILDTLLTFEPRINEKEIDIRGLD 346 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 ++ + AD + Q+ ++ NA+ F KG + A DN S++N+G + ED Sbjct: 347 VQRINMY-ADIDLIHQVMYNLIENAIKFVDKGGYIEFNFAEDNDQTTVSIRNSGEGLEED 405 Query: 734 MCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF+RF ++ RG +G+GLGL+I S + +HGG + + S T IP Sbjct: 406 ELPLVFDRFYKTDKSRGIHAQGLGLGLNIARSIVEIHGGKIMVKSVKGEFTEFTFNIPKN 465 Query: 792 E 792 E Sbjct: 466 E 466 >gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 925 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 137/256 (53%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F +++ +A+ AL+ +A A++ K++F+ +S+E+R+PL ++G +LL + Sbjct: 421 LCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT- 479 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ +QSQY+ I +SS++LL L++D+LD++ +++G + L + +L V +S Sbjct: 480 --TLDPRQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSF 537 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A ++I V +D +L + V D R+ Q+ +LSNA+ F+ G V+ ++ Sbjct: 538 AASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQVQRE 597 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 ++ ++ V + G I + +F F +G GLGLSI + + L G + Sbjct: 598 AESSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQ 657 Query: 774 ISSSDEGVTTINCRIP 789 + S ++ + R+P Sbjct: 658 VVSEPGLGSSFSVRLP 673 >gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 642 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 11/238 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++ D +R + EK EA K ++ K+ F+ +S+E+R+P+ +IG TDL+ ++ Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q +YV+ I S T LLN++NDILD + +++G +L T L L+E I K Sbjct: 295 LDEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPK 354 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718 + NI + ++ D +L Q+ +LSNA+ F+ G+ I ++ RD + Sbjct: 355 ALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCVRDQANS 414 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FSV + G +P + +F F H R+ G GLGL+I + + L GG + Sbjct: 415 KLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDI 472 >gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 511 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 8/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ T LG L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LLNL+N+ILDL+ ++AG +L+ + L +++ + + + NI Sbjct: 302 EYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARGKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I + + S AD + + Q+ +LSNA+ F+ G V +K G S+++N Sbjct: 362 TIGHQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDN 421 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783 G IPE+ V + F S A + +G GLGL IV++ + HGG + S EG Sbjct: 422 GPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLREGTEA 481 Query: 784 INCRIPSK 791 I P + Sbjct: 482 IAILPPRR 489 >gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1407 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F N R E AL E A A+ K+ F+ ++S+E+R+P+ +IG T LL + S Sbjct: 861 FTNAEVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDT---S 917 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q Y + + S+ LL L+NDILD + ++AG +L L ++L++V +A + Sbjct: 918 LSDEQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVR 977 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG 717 + + + ++ F+ D RL Q+ + + NA+ F+ +G +V L + Sbjct: 978 ARDKELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALVSGSAQE 1037 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 D + FSV++ G IPE +F+ F R+ G GLGL+I + L GG + + Sbjct: 1038 DLLRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISRQLVELMGGEIGV 1097 Query: 775 SSSDEGVTTINCRIPSKE 792 SS + + IP K+ Sbjct: 1098 SSRENEGSEFWFTIPFKK 1115 >gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] Length = 2370 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 6/241 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT +N A A+ IK+ F+ +S+ELR+PL I+G+T L+++ KL S ++ +E Sbjct: 1982 EAELTARNAA-ESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQATSDRA--LE 2038 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ + L+ D+LD++ + G + LN+ I L ++ +++ +I I+ Sbjct: 2039 TIERNAKLQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQT 2098 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I + +GS + D RL Q+ ILSNA+ F+ V +K + V + G I Sbjct: 2099 IFEFGVGSVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQVGSQVQICVTDTGKGIA 2158 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRI 788 + VF+ F A Q G+GLGL+IV + LHGG V S +E T R+ Sbjct: 2159 PEFLPYVFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGGTVQAESLGEEQGATFTVRL 2218 Query: 789 P 789 P Sbjct: 2219 P 2219 >gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 637 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 146/273 (53%), Gaps = 14/273 (5%) Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D + K ++ LE+ D L Y I P + + ++ D ++ + L E Sbjct: 222 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 279 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD++K+ F+ ++S+E+R+PL I+GF++++ ++ ++ +Y+E I +S +LL L+ Sbjct: 280 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 336 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ +++G ++++ + + L+ EV++ KM ++N+ +KVI DR Sbjct: 337 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 395 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ LSNA+ + KGS + + G ++ V + G I ++ +F RF Sbjct: 396 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFE 453 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGLSI +S + GG + ++S Sbjct: 454 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTS 484 >gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483] Length = 936 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 135/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T +L Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 743 -SERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKA 801 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + +D G+ Sbjct: 802 KG---EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911 >gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 1143 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 3/243 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA AL K L +A + K+ F+ ++S+ELR+PL +++ + LL + G+L+ +Q +Y Sbjct: 456 RAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSDEQIKY 515 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S LL L+NDILDL+ ++AG +++ T+ L L +++++ + + Sbjct: 516 ANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAEKKGLGF 575 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +SD + +DR RL QI +LSNA F+ +G + D+ F+V + G Sbjct: 576 DISLSDDCARTIESDRMRLEQILKNLLSNAFKFTERGQVSLAIERVDDAFIRFAVSDTGI 635 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + S+F F R+ G GLGLSI L GG +++ S +T Sbjct: 636 GISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPGEGSTFTL 695 Query: 787 RIP 789 IP Sbjct: 696 TIP 698 >gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 537 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 159/339 (46%), Gaps = 29/339 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EG+ V G + L NPAF L+ ++ G I IA R+ + + F A Sbjct: 208 MGEGLMVSDAGGTVTLVNPAFLELFGLTQS--VEGRQIIEIA----RF---PELHETFRA 258 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKN 559 +++S + +E +PL + + +LT + D +R A+ Sbjct: 259 VVSSRSEH---------------VEEMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDI 303 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 L++ + ++ FV +VS+ELR+P+T I G+ + L + + +++E I + S Sbjct: 304 SDLKRLEVVRRDFVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSER 363 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+L L+ +++G ++L + I L+ ++ + K I I + + Sbjct: 364 LADLIRDLLTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPP 423 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD RL Q+ ++ NA+ ++ G T+ L A +G SV + G IP +F Sbjct: 424 VLADPGRLEQVLINLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIF 483 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A G GLGLSIV+ I LHGG +++ S Sbjct: 484 ERFYRVDAARSRDEGGTGLGLSIVKHIIQLHGGSITVES 522 >gi|220917378|ref|YP_002492682.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955232|gb|ACL65616.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 729 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 3/219 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL AD K++F+ +VS+ELR+PL ++G+ DLL KLG L +Q ++ +++S L Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLADKLGPLAPRQRTALQVVASSGRRL 543 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + ++L+L+ + ++ L D++ + ++A + E +R++ Sbjct: 544 RAFIEELLELSRHELARPAEPFAPFPLADVITQAVVALAPRFAERGLRVRARVARGTPPA 603 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 R+R+LQ+ +L NA ++ GS + L AA SV + G IP + +F Sbjct: 604 QGQRERVLQVIVNLLGNAERYAPAGSAIHLAAAAVGDRVAVSVTDRGPGIPVEHQALIFE 663 Query: 741 RFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R +A R + +G+GLSI + + HGG + + S Sbjct: 664 RLYQVRDDAPRREGGALGIGLSIAKGIVEAHGGEIGVRS 702 >gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1559 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 9/255 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V +T + ++ LTE EA + AD K+ F+ +S+ELR+PL +IGF++LL++ + Sbjct: 1147 VEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQSGPMP-- 1204 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q + I+ + LL L+NDILDL+ ++AG M + + + L V Sbjct: 1205 DQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTA 1264 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----G 717 + + V + DR+RL Q+ +L NA F+ G V+L+AA + G Sbjct: 1265 RTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGG-VLLEAAFETVNDHFG 1323 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I V + G + + + +F+ F + H G GLGL+I + + GG + ++S Sbjct: 1324 TLILKVSDTGIGMSPETVRQLFDPFRQH-HTRDYEGTGLGLAISQRLVARMGGSIEVTSE 1382 Query: 778 DEGVTTINCRIPSKE 792 E +T +P E Sbjct: 1383 PEHGSTFRIVLPGVE 1397 >gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] Length = 1117 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L + A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 861 DITQWKRTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 920 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + Y+EY I S +L++VND+LD++ ++AG M+L++S + LN+ ++E + Sbjct: 921 NPR--YIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQP 978 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ G + VAD + + QI IL+NA+ F+ G +++ + + NG Sbjct: 979 QANSQRVIIRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSV 1038 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I +++ G + + F V+ R + G GLGL + ++ + ISS+ Sbjct: 1039 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSA 1098 Query: 778 DEGVTTINCRIPSK 791 T + PS+ Sbjct: 1099 PNEGTLVEISFPSQ 1112 >gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 1275 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ T + G + Sbjct: 1018 DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMATERFGPIG 1077 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + YVEY I S +L++VND+LD++ ++AG M +++ + LN+ + E + Sbjct: 1078 NPR--YVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQP 1135 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ A + NG Sbjct: 1136 QANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSV 1195 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISS 776 +++ G + + F A G+R G GLGL + ++ ++ + + SI+S Sbjct: 1196 SLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITS 1255 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1256 TPNEGTLVEITFPSQ 1270 >gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 640 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 8/218 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +++ F+ +S+EL +PLT +IG + L LG L+ +Q Y++ I S LL ++N Sbjct: 409 NRLRSEFLATISHELLTPLTYVIGMSSTLLLWPLGELSKRQRDYLQTIHDSGEHLLEMIN 468 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG----SFV 681 DILDL+ V+AG LN + L S+ K + +K+ D ++ SF Sbjct: 469 DILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKL--DLQINPSHDSFT 526 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ QI +L+NA+ F+ +G V L+ ++ IF V++ G IPE+ +F + Sbjct: 527 GDSTRVEQILWNLLTNAIKFTPEGGNVTLRLWVEDATAIFQVEDTGIGIPEEQLPLLFEK 586 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + +R + G G+GL++ + + LH G + + S+ Sbjct: 587 FQQLDTPYRRRYEGTGVGLALTKQLVELHRGRIEVEST 624 >gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium] Length = 595 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 9/268 (3%) Query: 532 PLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSPLTN 586 P+ N + ++T FV V + + + + +A R+ EI N + ++S+ELR+PL Sbjct: 319 PVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANRAKTELLANMSHELRTPLNA 378 Query: 587 IIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 IIGF++ +K G L S K +Y E I+AS LL L+NDILD++ ++AG L + Sbjct: 379 IIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQHLLKLINDILDVSAIEAGKTTLQEELL 438 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + ++ + + + + ++ + + + L +AD +R+ QI +LSNA+ F+ +G Sbjct: 439 NVVEIAETSLRLVRARAEKGSVSLFLEASDGLPPLLADGRRIKQILLNLLSNAVKFTPEG 498 Query: 706 STVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 V LKA D G +V + G + E F V + G GLGL + + Sbjct: 499 GRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLAMTEFGQVDGGLDRRHEGTGLGLPLTK 558 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790 + +HGG S+ S TT + P+ Sbjct: 559 GLVEIHGGIFSVESKKGHGTTASAIFPA 586 >gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1127 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 132/264 (50%), Gaps = 17/264 (6%) Query: 526 LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 ++ +I+P N + ++TD AE L E NE ++ + K+ F+ +S+E+ Sbjct: 504 VDTTIVPFMNENNKPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEI 563 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ +IG LL +KL +Q+ E S+ LL L+NDILD + ++A M+L Sbjct: 564 RTPMNGVIGMLGLLMNTKLDETQRRQASLAE---GSAKALLTLINDILDFSKLEAEKMEL 620 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699 + L D L + +IA K E I + + SD K AD R+ QI I+ NA+ Sbjct: 621 DNIDFNLRDELETFRDTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAV 680 Query: 700 DFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 F+SKG V++KA+ + N I + + G IP D +F F R+ Sbjct: 681 KFTSKGH-VLIKASLTLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYG 739 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV+ +L GG + + S Sbjct: 740 GTGLGLAIVQKLCSLMGGKIDVKS 763 >gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 793 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA L++ EA A + K+ F+ +VS+E+R+P+ ++G LL + L +KQ +Y Sbjct: 267 RAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLET---DLQAKQREY 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I +S +L+ ++ND+LD + +++G +K+ ++ E+ + + + + Sbjct: 324 AEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFL 383 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKN 725 + G++ + DR RL Q+ +L NA+ F+ KG+ T+ ++ + + G S V + Sbjct: 384 EYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSD 443 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IP+DM +F+ F RR G GLGL+IV + L GG VS S Sbjct: 444 TGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDS 496 >gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 894 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 112/443 (25%), Positives = 210/443 (47%), Gaps = 48/443 (10%) Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI--------VTSNPRGGTIWMF-ENLTVQ 422 K+WKE SV + H P V+ VTS+ GT+W F ++T + Sbjct: 306 KSWKEFAESVKRGDTAQGYIVHNPLPLCPEVLAIEGNAYWVTSDKGEGTVWTFGRDVTSR 365 Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482 + E + ++ + I++L G+ V +SN F+ +++ E ++ R Sbjct: 366 IRHEQQVKRFNRILDKIIENLPAGIVV------KDISN-NFKYIYRNRE------SYNRG 412 Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDER-----KSLQGTLE---LLSDSV-LEYSIIPL 533 I T + ++ D + L A D + K + T E + S+ L+ + + Sbjct: 413 IKMTEALGKDDFDFYPLETAKRKREQDIKIAETGKEMHWTAEEHDINGKSIYLDKRKMKI 472 Query: 534 PNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 +++ + ++T+ R +R L E +D++K++F+ ++S+E+R+PL I+G Sbjct: 473 ESSEFSPILLSIEWDITEMERMKRELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVG 532 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F+ ++ S + ++ Y E ++ ++ LL L+N+ILDL+ ++AGI++ + + L+ Sbjct: 533 FSRIIAES---TDADERLNYYEIVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHS 589 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST 707 L E+ + + + +++I + V D+ RL Q+ S ++ NA F++ G Sbjct: 590 LCKEIYDAHVFRCPQG---VELIYESSDEGIVIDGDKNRLFQVVSNLIGNAFKFTTNGK- 645 Query: 708 VILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766 I GD+ +F V + GS I D +F RFV Q G GLGLSI ++ I Sbjct: 646 -ISYGYHREGDYVVFHVNDTGSGIAADKLDRIFERFVKVNTFAQ--GTGLGLSICKTIIE 702 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 GG++S+SS TT +P Sbjct: 703 RMGGNISVSSEIGKGTTFTFILP 725 >gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1182 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V A+ AL+ L ++ K+ F+ ++S+ELR+PL + + LL+ ++ G+L +Q + Sbjct: 468 VTAQEALSANAARLEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR 527 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E I AS++ LL L+NDILDL+ V+AG + + T+ L+ LL ++++ + Sbjct: 528 YAETIHASNSDLLVLINDILDLSKVEAGQITIEPETVSLDALLQSLRETFEPMAAAKGLA 587 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + + + G + V+D QR+ QI +LSNA+ F+ G+ + +A V+++G Sbjct: 588 LALERTPGTPATLVSDGQRVTQILRNLLSNALKFTEHGAVTLTISAEGQRMVRLDVRDSG 647 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I D + +F F + Q G GLGLSI F L GG + ++S Sbjct: 648 IGIAADKLELIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRIGVAS 698 >gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 769 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 127/236 (53%), Gaps = 5/236 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISA 615 EK A +A++ K+ F+ ++S+ELR+PL IIGF++++ + G+L S++ Q Y I Sbjct: 526 EKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMT 584 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S LL ++NDILD++ ++AG M+L + L+ + E + +A + ++ ++ Sbjct: 585 SGHYLLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRAEVGD 644 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 ++ VADR+ + QI +LSNA+ F+ V +++ + + + G IP Sbjct: 645 QI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRSRIAGDSIVLMIADTGIGIPPQSL 703 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + F V + G GLGL+I +S +NLHGG + + S+ T + +P Sbjct: 704 RRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSLP 759 >gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 978 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 133/248 (53%), Gaps = 8/248 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R E AL E +++D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 593 ITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATE---NET 649 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +++ I ++ +LL LV+DILDL+ ++A ++ NY + LN L +V+ ++ ++ + Sbjct: 650 ERKEFISIIETNNQLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL-Q 708 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++ + + + + RL Q+ +L NA F+ KG + R + F VK Sbjct: 709 TGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEKGEIMFGYKIRGE-ELYFYVK 767 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TT 783 + G I + K +F RF Q G GLGLSI ++ + G + + S EG +T Sbjct: 768 DTGIGISLENQKKIFERFTKVNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGST 825 Query: 784 INCRIPSK 791 IP K Sbjct: 826 FWFTIPYK 833 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+ELR+PLT I+G ++ L+ G L +KQ Q + I S LL L+ND+LDL+ Sbjct: 599 FLANMSHELRTPLTAILGLSEALRDEVFGPLTAKQHQKLATIEQSGQHLLELINDVLDLS 658 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 +++G M+L+ S + L + + + H+ I++ ++G D +R+ Q+ Sbjct: 659 KIESGKMELHLSNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLL 718 Query: 692 SKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHR 748 +LSNA+ F+ + V ++ D + F V + G I PE++ K +F FV Sbjct: 719 INLLSNAVKFTPESGAVWIEVKGDLEHETLQFIVADTGIGIAPENIGK-LFQPFVQVDSS 777 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RR G GLGL++V I LHGG VS+ S + +P K+ Sbjct: 778 FTRRYAGTGLGLALVRQVIELHGGSVSLESELGSGSRFTVSLPWKQ 823 >gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 511 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ LG LN+ Sbjct: 242 EVANSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNNPL-- 299 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LL+L+N+ILDL+ ++AG LN + + ++ + I + Sbjct: 300 YKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRARAK 359 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723 IRI + L AD + + Q+ +LSNA+ F+ +G +++KA G ++ S+ Sbjct: 360 TIRISQQFESSLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYV-SI 418 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 K+NG IPE+ V + F S A + +G GLGL IV++ + H G + S EG Sbjct: 419 KDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREG 478 Query: 781 VTTINCRIPSK 791 I +P+K Sbjct: 479 TEGIAI-LPAK 488 >gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1545 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 9/241 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L E + AD K+ F+ ++S+E+R+P+ ++G +LL S L+ Sbjct: 968 DITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---DLD 1024 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ + + I S LL ++NDILD + +DAG + L+ + L + + +V ++T+ Sbjct: 1025 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 1084 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719 E ++ + V + +L S F+ D R+ QI + +L NA+ F+ +G ++ + R Sbjct: 1085 EKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKL 1144 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G IPE+ K VF +F RR G GLGL+I + L GG + + S+ Sbjct: 1145 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESA 1204 Query: 778 D 778 + Sbjct: 1205 E 1205 >gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1373 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 140/262 (53%), Gaps = 17/262 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +AE L + +A A+ K+ F+ ++S+ELR+PL I+GF+ L+ SL Sbjct: 876 DITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNRDP--SLT 933 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q + I++S LL L+N ILDL+ ++AG M LN ++ L+ LL+ +++ + K+ Sbjct: 934 SEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVE 993 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAAR 714 + + D + F+ D +L Q+ +L NA+ ++ KG + L+ + Sbjct: 994 TKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGGVSLKVKQQSYPLEKSP 1053 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + + +F V + G+ I + ++F+ FV + R ++G GLGL I F+ + GG + Sbjct: 1054 ETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQQGTGLGLPISRKFVQMMGGDIR 1113 Query: 774 ISSSDEGVTT---INCR-IPSK 791 + S+ G T N R IP+K Sbjct: 1114 -AKSELGTGTSFEFNLRVIPTK 1134 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 13/232 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ ++ +++K+ FV VS+ELR+PLT+I G +L TS L S S+Q + + Sbjct: 804 RDITER----KQVEKMKDEFVSVVSHELRTPLTSIHGSLGML-TSGLLSTTSEQGKRLLQ 858 Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATK--MHENN 666 I+ ST L+ L+NDILD+ +++G +K+ L DL+N + Q++A K + + Sbjct: 859 IATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSI 918 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 S+ AD R++Q + + SNA+ FS GSTV L + +V++ Sbjct: 919 QNSNSSSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDT 978 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IPED +S+F RF V ++ G GLGL+I +S + HGG + + S Sbjct: 979 GRGIPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKS 1030 >gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 989 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 + QT V + D + A +AL + EA A+ K+ F+ ++S+ELR+PL I+G+ Sbjct: 503 SGQTSHVIVIIQD-ISARKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGY 561 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ + L+++Q V I S LL L+NDILD A + AG ++L + L Sbjct: 562 AQMLQ--RDARLDARQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGF 619 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L + + +A + + + + ++ L + V D +RL Q+ +L+NA+ F+ +G + Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRGEVTL 679 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768 + G F V++ G + D +++F F + H + G GLGL+I + + Sbjct: 680 SVSRGAAGRVRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISRQLVRMM 739 Query: 769 GGHVSISSS 777 GG + ++SS Sbjct: 740 GGEIEVTSS 748 >gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 810 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA L++ EA A + K+ F+ +VS+E+R+P+ ++G LL + L +KQ +Y Sbjct: 284 RAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLET---DLQAKQREY 340 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I +S +L+ ++ND+LD + +++G +K+ ++ E+ + + + + Sbjct: 341 AEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFL 400 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKN 725 + G++ + DR RL Q+ +L NA+ F+ KG+ T+ ++ + + G S V + Sbjct: 401 EYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSD 460 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IP+DM +F+ F RR G GLGL+IV + L GG VS S Sbjct: 461 TGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDS 513 >gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116] Length = 1054 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E A K++A+ KA + K+SF+ ++S+E+R+PL +IG +++L + SL + Q YV+ Sbjct: 380 EDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDYVD 435 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS +LL+L+NDILD + +++G++ ++ + + + + ++ ++ K E I +KV Sbjct: 436 TIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGINLKV 495 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726 IS + D RL Q+ +SNA+ F+ KG S + N FSV+++ Sbjct: 496 SISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDS 555 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 G I E K++F F + R+ G GLGL+I + L GG + + S E Sbjct: 556 GIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKE 610 >gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] Length = 1042 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 7/242 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F ++T E+ L +A++ K++F+ +S+E+R+PL IIG +LL+ + Sbjct: 446 LCAFTDITIQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENT- 504 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ KQ +++ +S +S +L++L+ DILD++ ++A + + + + L DL+ Q Sbjct: 505 --ALSPKQKHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLY 562 Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + I D + + + D RL QIF +LSNA+ F+ G + N Sbjct: 563 QGLAQQKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTHNGKVTVELRNGTNN 622 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + I V + G I ++ + +F F AH GQ G GLGL I + L GG +S++ Sbjct: 623 NIILFVNDTGVGISQEQQEKLFEPFY-QAHSGQHTYGGTGLGLFICAELVKLMGGEISVT 681 Query: 776 SS 777 S+ Sbjct: 682 SN 683 >gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 498 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L +K LR+ DE + FV VS+ELR+PLT I G+T+ L ++ K+ +Y+ Sbjct: 249 KELNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEAL-LDEVVETPEKKEEYLHS 307 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + L LVND+LDL ++ G +KLN + L DL + V Q + E + +K+ Sbjct: 308 ILEETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKLA 367 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 K D R+ Q+ ++ NA+ + G +++K + + V ++G IP+ Sbjct: 368 LPEKPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDNEITVKVTDSGPGIPK 427 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + K ++++F + + G GLGL+IV+ + +HGG +++ S TT + +P Sbjct: 428 EEQKLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486 >gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1239 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 148/278 (53%), Gaps = 17/278 (6%) Query: 526 LEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E + PL + L ++++ AER L E+ + L A+ K+ F+ ++S+ELR+ Sbjct: 558 VEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRT 617 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL +I+ +D L+ + G+LN KQ ++ + I + LL L+ND+LDLA +++G M+L Sbjct: 618 PLNSILILSDQLRQNGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKL 677 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 + L DLL +++ S+ + + + + + D + + +DR RL QI + +L+NA+ F Sbjct: 678 EPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKF 737 Query: 702 SSKG----STVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQR 751 + KG + +L A +D + V+++G I +D + +F F + H G Sbjct: 738 TEKGQVELTASLLPADQDGRQMLQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYG-- 795 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I + + GG V ++S T +P Sbjct: 796 -GTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLP 832 >gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4] Length = 511 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 142/265 (53%), Gaps = 15/265 (5%) Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593 +++F + D + AE A + +EA R+A+E K+ F+ +S+ELR+PL I+GF+++ Sbjct: 227 LISFQSEKDDLIAELEVAKSMSDEARRRAEEANMAKSRFLASMSHELRTPLNAILGFSEV 286 Query: 594 LKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + LG LN+ Y EY I S LLNL+N+ILDL+ ++AG L+ +I L ++ Sbjct: 287 MAQEVLGPLNNPL--YREYSGDIHRSGQHLLNLINEILDLSRIEAGKYDLSEESISLLEV 344 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + + +I+I + L + AD + L Q+ +LSNA+ F+ G +++ Sbjct: 345 AEDCVGMVQLRAKAKDIKISQQYEINLPALWADEKALRQVVLNLLSNAVKFTPPGGEILV 404 Query: 711 KAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 K G ++ S+K+NG I E+ V + F S A + +G GLGL IV++ + Sbjct: 405 KVGWTVGGGQYV-SIKDNGPGIAEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILA 463 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 HGG + S T + +P+K Sbjct: 464 KHGGEFKLKSKLREGTEVIAILPAK 488 >gi|89097844|ref|ZP_01170731.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087346|gb|EAR66460.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 463 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 10/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R RA + + +++K DE K F+ +S+ELR+P++ I G++D + L + K +Y Sbjct: 224 RLARAFNQMSSSIQKEDERKKEFLADISHELRTPISYIKGYSDAI----LKGIADKDDKY 279 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S + LV D+LDL+ +D +L + L ++ + + E + + Sbjct: 280 LHLINRESVRMERLVGDLLDLSRLDTDEYQLVRMPLPLAQVIEDSLVRYTPALREKRVEL 339 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGS 728 + + D + + D R+ QI I+ N++ ++ KG + LKA+ N D I ++ + GS Sbjct: 340 RTMLDPDI-IIMGDEGRIGQIVQNIMDNSIRYTGKGYIEITLKAS--NRDCILTIIDTGS 396 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + +S+ RF V+ A G GLGL+I E I LH G +SI+SS TT+ Sbjct: 397 GIPPEDLESIKQRFYRVNKARTRDDGGTGLGLAIAEKLIQLHHGSISIASSPGEGTTVTI 456 Query: 787 RIP 789 ++P Sbjct: 457 KLP 459 >gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 829 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 18/237 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------ISAS 616 ++A K+ FV ++S+ELR+PL +I+GF S+LG + ++Q Y +Y I A+ Sbjct: 590 QEASRTKSEFVANISHELRTPLQSILGF------SELGMVRARQ--YEKYAAMFQDIHAA 641 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 +L LVND+LD++ +++ + ++ + DLL +V + + + +++ + Sbjct: 642 GQRMLGLVNDLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLRLDLGRV 701 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDM 734 L S V D R Q+ +LSNA+ FS +G T+ + A+ D + V+++G IP Sbjct: 702 PLVSKV-DSTRFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAE 760 Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 ++VF+ FV S+ R + G GLGL+I + HGGH+ +++ +G T + +P+ Sbjct: 761 LEAVFDAFVQSSKTRDESGGTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLPT 817 >gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 929 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 4/236 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T A RAL EA A K+ F+ VS+ELR+PL I+G+T +L+ L L Sbjct: 447 IDITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTPLNGILGYTQILRRDPL--L 504 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ + + I S+ LL L+ND+LDL+ ++AG ++L+ L + ++ A + Sbjct: 505 GEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHPGDFALAEFAAGAERVFAPRA 564 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E N+ ++ L FV D RL Q+ +L NA+ F+++G V ++ G F Sbjct: 565 REKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKFTAQGGVVFSISSSAGGGLRF 624 Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G I +F F G G GLGL+I S + GG + + S Sbjct: 625 SVSDTGRGIAAADLSRIFEPFTQVGESTGAATGTGLGLAISRSLVERMGGRLQVES 680 >gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 614 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 131/233 (56%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ D++K+ + VS+ELR+PLT+I+G+ LLK G LN KQ ++V IS +S Sbjct: 382 DELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKLNEKQKEFVSVISENSER 441 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L + +++ DL +VD ++ ++ + ++ N V++ I++ H + R ++ + S Sbjct: 442 LKRITDNMSDLVSVDDDVLDGEFNKL---NIKNAVEEIISSLQHFADSRNIILLEDVDDS 498 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 ++ D+ ++ Q+ + ++ NA+ FS K + V + DNG+ + + G IP++ + Sbjct: 499 YIKGDKSKIHQVLANLIENAVKFSKKQTKVTVTGFEDNGNIHLEITDQGPGIPKEHLDKI 558 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF + ++ + + G GLGL++ + + HGG + + S T ++ P Sbjct: 559 FDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLFP 611 >gi|115373794|ref|ZP_01461087.1| periplasmic sensor hybrid histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310817567|ref|YP_003949925.1| putative response regulator/receiver [Stigmatella aurantiaca DW4/3-1] gi|115369193|gb|EAU68135.1| periplasmic sensor hybrid histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309390639|gb|ADO68098.1| putative response regulator/receiver [Stigmatella aurantiaca DW4/3-1] Length = 682 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 9/242 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL EK E+L++A E+K V +VS+E R+PL +I+G + +L G L S+Q + V+++ Sbjct: 165 ALDEKAESLQRAAEVKGRVVANVSHEFRTPLHSILGLSKVLLNPLNGPLTSEQEKQVQFV 224 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVI 672 S+ L +LVND+LDL+ ++AG L + V + ++ ++ + + E++ I Sbjct: 225 RTSAEALYDLVNDLLDLSKMEAGKAVLRPNRFVAGEFISALRGMMRPLLPPESSTEILFP 284 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSI 730 D +L Q+ ++SNA+ F+ KGS I + RD FI VK+ G I Sbjct: 285 EIPSTVELETDEAKLSQVLRNLVSNAVKFTEKGSIAINVAQGPRDTVSFI--VKDTGIGI 342 Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 P + + +F F+ + H+ + +G GLGL + + GG +++ S + +T Sbjct: 343 PPEYHERIFEEFIQVETPLHK-KVKGTGLGLPLARRLTEMLGGTLTVQSVEGQGSTFTVT 401 Query: 788 IP 789 IP Sbjct: 402 IP 403 >gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1239 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 147/278 (52%), Gaps = 17/278 (6%) Query: 526 LEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E + PL + L ++++ AER L E+ + L A+ K+ F+ ++S+ELR+ Sbjct: 558 VEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRT 617 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL +I+ +D L+ + G+LN KQ ++ + I + LL L+ND+LDLA +++G M+L Sbjct: 618 PLNSILILSDQLRQNGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKL 677 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 + L DLL +++ S+ + + + + + D + + +DR RL QI + +L+NA+ F Sbjct: 678 EPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKF 737 Query: 702 SSKGS----TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQR 751 + KG +L A +D + V+++G I +D + +F F + H G Sbjct: 738 TEKGQVELMASLLPADQDGRQMVQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYG-- 795 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I + + GG V ++S T +P Sbjct: 796 -GTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLP 832 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV--------TDSVRAERALTEKN--- 559 R + T++ L+ EY + P +A+ +L V +VRAERA E Sbjct: 722 RAGEEATIQGLNSGADEYLVKPF-SAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRF 780 Query: 560 -EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASS 617 E R+A ++ + VS++LRSPLT I +LL+ G ++ + + I S+ Sbjct: 781 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 840 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L++D+LDLA++DAG + + +++L+ + ++ E +++ + L Sbjct: 841 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 900 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735 D++R+LQ +LSNA+ F+ G +++L+A + G D SV + G IP Sbjct: 901 -ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQ 959 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F+R+ +R G GLGLSI + + HGG + + + +T + +PS + Sbjct: 960 PHIFDRYWHGVQ-NKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 1015 Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 124/245 (50%), Gaps = 8/245 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S RA ++ E L D+ K +F +VS+E R+PLT I+G + + +L ++ Sbjct: 1354 SARAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK- 1412 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ + ++ L +VN +LD + ++AG + +Y + L+ + + + + + + Sbjct: 1413 --LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGL 1470 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNN 726 R+ V D + ++ +LSNA+ ++ +G V+L+ D+ + +V++ Sbjct: 1471 RLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHA--VLTVQDT 1528 Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE+ VF RF A +G+ G G+GL++V+ + LHGG +S+ S+ T Sbjct: 1529 GVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAF 1588 Query: 785 NCRIP 789 R+P Sbjct: 1589 TLRLP 1593 Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615 ++ EAL + D K +F +VS+ELR+PL ++G D L+ ++ L KQ + E + Sbjct: 357 KRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEY-PLPPKQRERQEVVHR 415 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L LVN +LD A ++AG + ++ L+ L E+ + + M + + V Sbjct: 416 NGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPV 475 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734 + D ++ +LSNA+ F+ +G I A R GD + +V++ G+ +PE Sbjct: 476 LPEAVYVDPAMWEKVVLNLLSNALKFTLQGEVRI--ALRWLGDRVELTVQDTGTGMPEAE 533 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GL++V+ + LHGG V++ S +T +P+ Sbjct: 534 LPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPA 591 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 12/291 (4%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE---KNEALRKADE 567 R + T+E L +Y + P + ++ D R R + + + LR++ Sbjct: 1738 RAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEIEKKVLRESVR 1797 Query: 568 IKNSFVQHVSYELRSPLTNI-IGFTDLLKT--SKLGSLNSKQSQYVEYISASSTI--LLN 622 +++ F+ VS+ELR+P++ + + F L+++ + G S ++ V+ + + L Sbjct: 1798 VRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLAR 1857 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV +LD + G +KL + L+ + + V + +K + + + + + Sbjct: 1858 LVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLNAPSPVMGYC- 1916 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNR 741 DR RL Q+ +L NA+ F + G + + RD+ + +V ++G+ I PED + +F R Sbjct: 1917 DRARLHQLLEGLLDNALKFGA-GKPIEVAVWRDSDHALLTVMDHGAGIEPEDE-ERIFGR 1974 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F G GLGL I H G + + ++ G T +P E Sbjct: 1975 FERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 2025 >gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1300 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 12/247 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +L F + + RAE A+ A A K+ F+ ++S+E+R+P+ I+G LL+ + Sbjct: 462 AVLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQT 521 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L +Q+ YV+ + S+ LL ++NDILD + V+AG ++L + L+DLL + Sbjct: 522 EL---TGRQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVI 578 Query: 658 IATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKA 712 + + E +I + V D L V D RL QI + NA+ F+ G V+ L+ Sbjct: 579 VGSAAQEKDIDVLFSVAPDVPL-ELVGDPLRLQQILINLAGNAIKFTETGEVVVSVRLRT 637 Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D+G + FSV++ G I + + +F F RR G GLGL+I + L Sbjct: 638 LADDGAVLDFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMN 697 Query: 770 GHVSISS 776 G + + S Sbjct: 698 GAMDVES 704 >gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1205 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 15/238 (6%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLNLV 624 + +KN F+ VS+ELR+PLT I G +LL T L + S + Q+V I+A ST L+ LV Sbjct: 963 ERMKNEFISVVSHELRTPLTAIHGALNLLSTG-LVAPESPRGQHVIKIAAESTERLVRLV 1021 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDIL+L ++ G +KL + LL + + + I+++++ F AD Sbjct: 1022 NDILELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEILPQDI--EFEADG 1079 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------IFSVKNNGSSIPEDMC 735 R++Q+ + ++SNA+ FS GST+ L + F +F V++ G IP + Sbjct: 1080 DRMIQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQGRGIPLEKM 1139 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +S+F RF V + Q+ G GLGL+I S + HGG + + S + + IP K Sbjct: 1140 ESIFERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFYFSIPVK 1197 >gi|224535633|ref|ZP_03676172.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus DSM 14838] gi|224522754|gb|EEF91859.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus DSM 14838] Length = 224 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K++F+ ++S+E+R+PL +I+GF+DLLK + S + Q+V+ I+ + T+LL L+NDI Sbjct: 2 LKSAFLANMSHEIRTPLNSIVGFSDLLKDIEAFS-PEEVKQFVDTINTNCTLLLALINDI 60 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ +++G M ++ L ++ ++ S M + + +G+ S V D RL Sbjct: 61 LDLSRIESGSMDFRFAGYNLTFVMQQIYDSQRLSMPRGVELVMKLPEGEGKSIVTDSVRL 120 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ + ++NA F+++GS + G +F V++ GS I E+ + +F RF Sbjct: 121 KQVINNFINNAKKFTTQGSITFGFQTEEPGYTVFFVEDTGSGISEENQRRIFERFYKVDS 180 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 Q G GLGLSI ++ + G +++SS T R+P Sbjct: 181 FTQ--GAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 220 >gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 916 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 8/249 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL E+ L + + K+ F+ ++S+ELR+PL +++ +L +K G+L+ KQ +Y Sbjct: 489 KAKTALEEQASHLALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGNLSPKQVEY 548 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I +S LLNL+NDI DLA ++AG + + I L +L+ +++ + + Sbjct: 549 AETILSSGNDLLNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPIARQKLLDF 608 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSV 723 + D + +F D+ RL+QI +LSNA F+++G + K + +FSV Sbjct: 609 TIQLDNDIPKTFFTDKNRLMQILKNLLSNAFKFTNEGCVNLHVQRATKISEKGTQIVFSV 668 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I +D +F F R+ G GLGLSI L GG + + S Sbjct: 669 SDTGIGIAKDKQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIELQSIKGKG 728 Query: 782 TTINCRIPS 790 +T + IP+ Sbjct: 729 STFSVYIPT 737 >gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 936 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T + Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 743 -AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKA 801 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E+ ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + ++ G+ Sbjct: 802 KED---VELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYELKE-GELE 857 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 858 FYVKDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911 >gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 934 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 133/237 (56%), Gaps = 15/237 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T E L + D +K++F+ ++S+E+R+PL I+GF+DLL +T+ + Sbjct: 686 DITKLKETEAELIHARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETADI--- 742 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y++ + ++ +LL L++DILDL+ ++AG + ++ + +N L ++ +S+ K Sbjct: 743 -EERREYMKIVRENNDLLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKT 801 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E N+++ + + +DR R+ Q+ S ++NA+ F+S+G+ + +D G F Sbjct: 802 KE-NVKLVFEPNFSICHITSDRNRIYQVISNFVNNAIKFTSEGNIRVGYVLKDEG-LEFY 859 Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +F RFV S H G GLGLSI +S + GGH+ + S Sbjct: 860 VQDTGIGIEKKQLPHIFERFVKLDSFVH-----GTGLGLSICQSIVEQLGGHIGVDS 911 >gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN] gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN] Length = 844 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 27/265 (10%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EKN+ L++ ++K+ F+ ++S+ELR+PL IIGF+++LK +G + KQ ++V I Sbjct: 308 LAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFSEVLKDGLVGEITPKQHEFVSDIF 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS LL+L+NDILDL+ ++AG M L+ T ++ +L + K + I ++ Sbjct: 368 ASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAMLRNSLSIVKEKASAHAILLQFDVA 427 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------------ 716 LG + D ++ QI +LSNA+ FS+ V L+A + Sbjct: 428 EPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTLQARKVQRAAIETWATQQPTSLRMP 487 Query: 717 ------GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 DF+ +V + G I +F F + ++ G GLGL++V + L Sbjct: 488 LPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQLDSSLSRVSEGTGLGLALVLKLVQL 547 Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792 HGG V+++S+ +T +P ++ Sbjct: 548 HGGTVALASTPGHGSTFTVWLPWRK 572 >gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 641 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 124/498 (24%), Positives = 211/498 (42%), Gaps = 41/498 (8%) Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKL----- 365 + ++ + +FD L N+ F +L +I +F N EF L +A + Sbjct: 161 VQHMPQGVCLFDNALNLVVANKIFFDLTQIPDSF---NVKGINFYEFMLYNAQRGEYGPG 217 Query: 366 -PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424 PE+L + + + E H P+G + V P G I F ++T + Sbjct: 218 DPEELARQRQE-----IAARMEPHAFDRTRPDGTVIEVRGNPIPGRGFISTFTDITERAK 272 Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNI 483 E + ++ V + DG I L+ A L ++ + GT+I N Sbjct: 273 AEEALREAATMARAMLEAPGLLVLLIRMDGTIVDLNEEAAVGLGSHKDAMI--GTNIFNA 330 Query: 484 AAT--CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---- 537 T R + + L A I F+DER E ++ P P Q Sbjct: 331 MPTKVAERRFALAQQAILEARAIY-FEDERDG----------RWFETTMTPYPMDQDGIP 379 Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 M+ +VT AE+ L E + A+ K F+ +S+ELR+PL I+GF++++ Sbjct: 380 RVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIISR 439 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G + + Y + I+A+ LL ++NDILD++ ++ G L + ++L + Sbjct: 440 EMFGPVGERYRTYGQDINAAGQHLLAMINDILDISRIEIGAFTLCIEPVDPHELAYSCLR 499 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARD 715 + ++ N+ + L + D +R QI +L NA+ F+ G V L+ RD Sbjct: 500 LVGSRAEAGNVDLSEDMPESLPHLMIDSRRTKQILINLLGNAVKFTPPGGKVTLRGETRD 559 Query: 716 NGDFIFSVKNNGSSIPE-DMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +G F V + G + E DM S F + + R + G GLGL + +S LHGG + Sbjct: 560 SGGIAFHVIDTGIGMSEADMAVALSPFGQVDTGLDR-RFEGAGLGLPLAKSLAELHGGSL 618 Query: 773 SISSSDEGVTTINCRIPS 790 I+S TT++ P+ Sbjct: 619 EITSIPGKGTTVSVYFPA 636 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 57/286 (19%), Positives = 108/286 (37%), Gaps = 40/286 (13%) Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 +T +L +L I++F + L NR F +L E FL + + ++++ F + Sbjct: 1 MTMMQGVLDHLDQGISVFSADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGE 60 Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV--Q 422 + + + + H+ PNG L +I P GG + + ++TV Q Sbjct: 61 YGGHYDVEDMVRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQ 120 Query: 423 V-----------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 + D E ++ + T+ H+ +GV +F + ++ Sbjct: 121 IAENLRGSNDRLDQMVERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVA 180 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGWDL------FAAIITSFDDER 511 N F L + ++ G + ++ Y D +L AA + +R Sbjct: 181 NKIFFDLTQIPDSFNVKGINFYEFMLYNAQRGEYGPGDPEELARQRQEIAARMEPHAFDR 240 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 GT V+E P+P + TF ++T+ +AE AL E Sbjct: 241 TRPDGT-------VIEVRGNPIPGRGFISTFTDITERAKAEEALRE 279 >gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365] gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] Length = 1035 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765 NGD + V++ G + + + F NA G++ G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|253566766|ref|ZP_04844218.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265763189|ref|ZP_06091757.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|251944329|gb|EES84818.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263255797|gb|EEZ27143.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 639 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R++ AL E + +++ +K++F+ ++S+E+R+PL I+GF+D+L + GS Q Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I ++S +LL L+NDILDL+ ++A + L + L + S+ E+ Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 R + + K SFV D QRL Q+ +L+NA F+ G+ T+ + ++ +F+V Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G IP++ K VF RF Q G GLGLSI + ++ GG + I EG Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYEG 629 >gi|167645203|ref|YP_001682866.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167347633|gb|ABZ70368.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 579 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+ELR+PL I+GF+D+++ G L + +Y E I S LL+L+ND+LD++ Sbjct: 326 FLANMSHELRTPLNAIMGFSDIMRARMFGPLTDRYGEYAELIHESGRHLLDLINDVLDMS 385 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 ++A +L + + + + + ++++ + ADR+ L QI Sbjct: 386 KIEAERFELQRGEFDAREAVTAAMRLLRVQADAAGVQLRGVLPPTDLEVDADRRALKQIV 445 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQ 750 ++SNA+ F+ +G V + A +G+F V + G I PED+ + R A Sbjct: 446 LNLVSNALKFTPRGGQVTVTADGHDGEFELVVADTGVGISPEDLER--LGRPYEQAGGVD 503 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +R G GLGLS+V +F LHGG + I S T+++ R+P Sbjct: 504 QRAKGTGLGLSLVRAFAKLHGGEMHIESRMGAGTSVSVRMP 544 >gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 885 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 26/283 (9%) Query: 518 LELLSDSVLEYSIIPLPNAQTML-----------TFVNVTDSVRAE---RALTEKNEALR 563 LE L SVL S+ NAQ + +F ++T RAE + L E+ R Sbjct: 442 LERLDGSVLWLSV----NAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLAAAESAR 497 Query: 564 K----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + A +K+ F+ +S+ELR+PLT ++G+ +L+T KL ++ + +E + ++ Sbjct: 498 QEAEAASHLKDEFLATMSHELRTPLTAVLGWVRMLRTGKL--PEERRDKALETVERNAQA 555 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L++D+LD++ + AG ++L+ I L +++ + + +R+ + + +G+ Sbjct: 556 QAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEPGVGA 615 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL Q+ +L+NA+ F+ +G V ++ R +G +V + G I VF Sbjct: 616 VAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAEITVSDTGQGIEPAFLPYVF 675 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 +F RR G+GLGL+IV+S + +HGG S EG Sbjct: 676 EQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEG 718 >gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] Length = 941 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD++KN V VS+ELR+PL +++G+T+LL +L +Q +Y+ I + L L Sbjct: 581 EADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP--ERQKKYLNTIYQEANRLTVL 638 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFV 681 +ND LD+ +++G L LL EV + I T +H+ I+ +SD + Sbjct: 639 INDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHD----IQFVSDADDDMVL 694 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 DR +LLQ+F ++ NA+ +S G + +K + S+ + G +PE+ ++F + Sbjct: 695 GDRDKLLQVFQNLIQNAVKYSPAGGNITIKLHSAPKELHVSIIDEGLGVPEEAMPNLFTK 754 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V N+ R + G GLGL+I + I H G + +SS +T +P Sbjct: 755 FFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILP 804 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ + R DE FV VS+ELR+PLT+I G +L + L + + + + +E Sbjct: 1112 RDITERKQIERMKDE----FVSVVSHELRTPLTSIHGSLGMLASGLLPADSEQGRRLLEI 1167 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S+ L+ L+NDILD+ +++G +K+ + L DL+ + ++ +++ V Sbjct: 1168 ATDSTERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSV- 1226 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + +V D R++Q + +LSNA+ FS+ TV L A + + + +VK+NG IP Sbjct: 1227 SHPSIQLWV-DPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQQYGDELLVTVKDNGRGIPA 1285 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D S+F RF V ++ G GLGL+I +S + HGG + Sbjct: 1286 DKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRI 1327 >gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 775 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 100/402 (24%), Positives = 180/402 (44%), Gaps = 43/402 (10%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 TV+ DL + + I+ + E ++ + R+ L N F+ L K ++ ++PGT Sbjct: 371 TVEADLRLR---------DAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTS 421 Query: 480 IRNIAATCS---------RYYNESDGWDLFAAIITSFD----DERKSLQGTLELLS---- 522 + + + G F A + + ER++ G + Sbjct: 422 YETVVEVGTMPEARTRLPEAGHHPPGARTFEAQLDNGKWLHISERRTKDGGYVAVGTDIT 481 Query: 523 ------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 D L +++ L +Q L V A++ EKN A A++ K+ Sbjct: 482 RIKEHEQKLVENDLRLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRA-EDANQTKS 540 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILD 629 F+ ++S+ELR+PL IIGF++++ + GSL S++ Q Y I S LL ++NDILD Sbjct: 541 KFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILD 600 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689 ++ ++AG MKL+ L L+E + ++ + + ++ D + +ADR+ + Q Sbjct: 601 MSKIEAGRMKLDLEPFDLATTLSESLRVVSGRADNKQLMLRADIDNDI-PVLADRRAIKQ 659 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747 I +LSNA+ F+ G V ++ + + + G I + + + F V + Sbjct: 660 ILVNLLSNAVKFTPDGGRVTVRGRVFEEQIVLLIADTGIGIAKQSLRRLGQPFEQVESQL 719 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I +S NLHGG + + S T + +P Sbjct: 720 TKTYHGSGLGLAIAKSLTNLHGGSMRLRSQLGVGTVVRVALP 761 >gi|239909171|ref|YP_002955913.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239799038|dbj|BAH78027.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 840 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 11/258 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +L + T +AE L + A K++F+ ++S+ELR+PL + G +LL T Sbjct: 416 HALLLINDATVRKQAEDELRQAKHQAEAASRAKSAFLANMSHELRTPLGGVAGMLELLLT 475 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +L+ +Q +YV S+ L +L++DILDL+ ++AG + L + +L + + Sbjct: 476 T---ALDGEQHEYVTAALKSTRRLSDLLSDILDLSRIEAGKLDLRLAPFETANLRAAILE 532 Query: 657 SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKA 712 A E + ++ + G +D RLLQI ++ NA+ F+ G + Sbjct: 533 VFALAAREKGLILEFTLHPGLPARIESDEARLLQILFNLVGNAVKFTGLGFVRVDLWSLP 592 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLH 768 AR +G +FSV ++G IP+ +F F H Q R GVGLGLSIV I L Sbjct: 593 ARPDGRTPLVFSVADSGVGIPDGRLGEIFEPFAQGDHPRQQSRFGVGLGLSIVSRLIALL 652 Query: 769 GGHVSISSSDEGVTTINC 786 GG +++ ++ G T C Sbjct: 653 GGELAVDNAPGGTTVYGC 670 >gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365] gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365] Length = 397 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 133/256 (51%), Gaps = 20/256 (7%) Query: 555 LTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 LT KNE L +A D +K+SF+ VS+ELR+PLT++IG+ ++L G LN +Q Sbjct: 129 LTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEMLFEGLAGPLNKEQR 188 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y++ I + + LL L+ +L+ + +++G + + + + +N ++ V S+ + I Sbjct: 189 DYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIERVLSSLGPQARARTI 248 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARDNGD-- 718 ++ I L + D +R+ Q+ +++NA+ F+++ + + L D GD Sbjct: 249 EVRPIP-ADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEVRVAPLSRYADEGDTP 307 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 V + G IP + +S+F F RR G GLGL++ +S+I +GGH+ + Sbjct: 308 GVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTLAKSYIEANGGHIWVE 367 Query: 776 SSDEGVTTINCRIPSK 791 S+ + +P++ Sbjct: 368 SAPGEGASFTFTVPAE 383 >gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS] gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS] Length = 1610 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 34/267 (12%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + AL K L A K+ F+ ++S+ELR+PL +++ LL ++ G+L KQ +Y Sbjct: 885 KTQVALETKARELELASRYKSEFLANMSHELRTPLNSLLILAQLLTENRAGNLTDKQVEY 944 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+N+ILDL+ V+AG ++++ + DL+ ++Q E + Sbjct: 945 AKTIHSAGSDLLTLINEILDLSKVEAGRIEVHAEAVSFTDLVEMIEQKFRHVAAEQKLEF 1004 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------------LK 711 ++ L + DRQRL QI + +LSNA F+S+G+ + ++ Sbjct: 1005 QITVANDLPPILHTDRQRLKQILNNLLSNAFKFTSQGAVKLDIQFLGENTPGYSQQEGVR 1064 Query: 712 AARDNGDF-------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 GDF FSV + G IP D ++VF F RR G GL Sbjct: 1065 GRTTPGDFQPDGIKGREKSQIAFSVTDTGIGIPTDKQETVFEAFQQVDGSTSRRYGGTGL 1124 Query: 757 GLSIVESFINLHGGHVSI-SSSDEGVT 782 GLSI L GG + + S +D+G T Sbjct: 1125 GLSISRQLARLLGGDILLHSEADKGST 1151 >gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 2107 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 13/252 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L EK E L K+ F+ ++S+ELR+PL +++ + L T++ +L+ KQ +Y Sbjct: 1391 ARQELEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLATNRDNNLSDKQVEYA 1450 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL+L+N+ILDLA +++G M + S++ + L + V++ E+ + + Sbjct: 1451 STIHQSGADLLSLINEILDLAKIESGTMAVEVSSVSFSQLSDYVERLFRQVADESGVVYQ 1510 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGD----F 719 + +D + D QRL Q+ +LSNA F+ KG STV +A D GD Sbjct: 1511 IECADELPAAIETDEQRLRQVLRNLLSNAFKFTKKGEVMLRMSTVKPEADGDYGDEPFLV 1570 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 FSV + G IP+D + +F F RR G GLGLSI L GG + + S Sbjct: 1571 AFSVSDTGIGIPKDKQRIIFEAFQQADGGTSRRFGGTGLGLSISREIAELLGGELDVESE 1630 Query: 778 DEGVTTINCRIP 789 +T +P Sbjct: 1631 PGRGSTFTLYLP 1642 >gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 926 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 136/239 (56%), Gaps = 19/239 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L + + D +K++F+ ++S+E+R+PL I+GF+DLL +T + Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV--- 732 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K Sbjct: 733 -AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKA 791 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E+ ++++ D L ++DR R+ Q+ S ++NAM F+S+GS + ++ G+ Sbjct: 792 KED---VELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYELKE-GELE 847 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F VK+ G I ++ +F RFV S H G GLGLSI +S + GG + + S Sbjct: 848 FYVKDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901 >gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] Length = 1400 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A + E L + D K +F ++S+E R+PLT I+G + L+ G ++++ Sbjct: 336 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIVGPLEELRARPDG-VDARAR 394 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + +E I S+ L LVN +LD + ++AG M+ Y + L ++ E+ + + + + Sbjct: 395 EELELIHRSALRLGKLVNSLLDFSRLEAGRMQAQYEPVDLAAVVAELASVFRSAVEKAGL 454 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V DR ++ +LSNA+ F+ GS + A D G + +V + G Sbjct: 455 TFEVDCPPLPEPVYIDRGLWEKVVLNLLSNALKFTFDGSVRVAVRA-DEGHAVVAVADTG 513 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +PE +F RF + NA G G+GL++V+ + LHGG +S +S ++ TT Sbjct: 514 IGVPEQEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTISAASVEKQGTTFT 573 Query: 786 CRIP 789 RIP Sbjct: 574 LRIP 577 >gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 923 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K+EA A + K+ F+ +VS+E+R+P+ IIG DL + L+SKQ ++++ I +S Sbjct: 267 KDEA-EAASKSKSEFMANVSHEIRTPMNAIIGMADLTMET---DLSSKQREFIKIIISSG 322 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 +LL L+NDILD + ++AG + L L+ L++++ +M + + + I G Sbjct: 323 KVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGV 382 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPE 732 + D RL Q+ I +NA F+SKG +I +A + +F++K+ G IPE Sbjct: 383 PQRIIGDPLRLRQVLVNITANAFKFTSKGEIIITVSADQINATKTEIVFAIKDTGIGIPE 442 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 ++ +F F R+ G GLGLSI + +NL GG++ S E +T Sbjct: 443 EVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGST 495 >gi|119504432|ref|ZP_01626512.1| sensory box sensor histidine kinase/response regulator [marine gamma proteobacterium HTCC2080] gi|119459940|gb|EAW41035.1| sensory box sensor histidine kinase/response regulator [marine gamma proteobacterium HTCC2080] Length = 718 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 17/281 (6%) Query: 523 DSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHV 576 DS L S P + Q M T ++ D ++A A L + + +A+E + + HV Sbjct: 118 DSALTMSDFPAHDVQMDQLFFMSTQQSMVDDLQALNAQLKSAKQEVDRANEARQKYFHHV 177 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+PL +I L+ KL K +Y E S S+ LL ++N LD A++++ Sbjct: 178 SHEMRTPLNGVISSLSLMSDFKL---EGKLLEYAELASKSADRLLEVINFTLDTASLESH 234 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL-QIFSKIL 695 + + + S L+DL+NE + E + + + + R +LL Q+ S +L Sbjct: 235 VSEADNSAFCLDDLINECLMLARPRALEKGLELGRSGERGFSKNYSSRLKLLRQVLSNLL 294 Query: 696 SNAMDFSSKGSTVI----LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748 SNA+ FS G+ + L + GD + F+V + G IP D +S+F F + +A Sbjct: 295 SNAVKFSQSGTITVGALSLGSDYPQGDMVEFTVSDQGPGIPADAIESLFEPFSTGLSAAT 354 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +G GLGL+IVE F+ GG VS+ SS T + IP Sbjct: 355 QHAQGTGLGLNIVERFVEALGGEVSVESSVGSGTIFSFTIP 395 >gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Sodalis glossinidius str. 'morsitans'] gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str. 'morsitans'] Length = 958 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ VR E +L + +A++ K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 445 VLVDVSARVRMEESLQDMAAVAEQANQAKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 501 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V +S SS +LLN+++DILD + +++ +K+ + ++ + S + Sbjct: 502 ALPDGVDRLVMAMSNSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLS 561 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D + S D RL Q+ S +L+NA+ F+ G+ V+ RD G Sbjct: 562 LVVKKRLGLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFTRSGNIVVTVYCRD-GYL 620 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 +FSV++ G + +F+ FV GQR +G GLGL+I E +NL G +++ S Sbjct: 621 LFSVRDTGVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESE 680 Query: 778 DEGVTTINCRIP 789 + R+P Sbjct: 681 RGLGSRFTIRLP 692 >gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 485 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 28/304 (9%) Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS------IIPL--- 533 I++ + Y+ S G +F I+ SF + KS+ ++ LL + E + I P+ Sbjct: 177 ISSQVLKVYSASAGLVIFLGIMISFFNT-KSINRSIRLLQEQTKEIARGKFATIQPISSP 235 Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P + + NV +E L++ DE+K F+ HVS+ELR+PLT I T + Sbjct: 236 PEIKELADHFNVM------------SERLQELDEMKIDFISHVSHELRTPLTVIKEATGM 283 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L Q + + L++ VN ILDL+ ++A +M+ + L+ L+ E Sbjct: 284 LLDGTYADSRESQQELLTITQQECDRLIDSVNRILDLSRMEAKMMEYVFVPCQLSPLIQE 343 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +A IR+++ L D R+ Q+ ++SNA+ FSSKG TV ++ A Sbjct: 344 TVLKLAPIAIREEIRLQLKLQDHLPLVKMDEARIKQVLENLISNALKFSSKGDTVSVRTA 403 Query: 714 --RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 R+ D I SV + G+ I ++ + +F+RF RG+ RG GLGLSI + + H Sbjct: 404 VQRNGQDCIQISVADTGTGIQKENLERIFDRF-KRIERGKETARGTGLGLSIAKHIVTEH 462 Query: 769 GGHV 772 GG++ Sbjct: 463 GGNI 466 >gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium etli IE4771] Length = 570 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 9/249 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 187 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 246 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 247 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 306 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 307 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 365 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 366 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 425 Query: 784 INCRIPSKE 792 + +P+K Sbjct: 426 VIAILPAKR 434 >gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 587 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 171/348 (49%), Gaps = 31/348 (8%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 K+Q + + EGV D RI L NPAF ++ +++ T I I Sbjct: 251 KIQA-ILTSMVEGVIAVDKDTRILLVNPAFEKIFNVVADQVIGLTVIEGI---------- 299 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 ++L ++ + R ++ +E++ +++PL + ++ V V Sbjct: 300 -RNYELEKILLKALKKGR-TINQEIEIVPLRRAFRVNVVPLMRKEKIVGVVAVF------ 351 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYV 610 R +TE +R+ +++++ FV +VS+ELR+PLT+I GF + L G++ ++ +++ Sbjct: 352 RDITE----IRELEKMRSEFVANVSHELRTPLTSIKGFVETLLD---GAMEDREVARRFL 404 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I+ + L L+NDIL L++++A +++ S + N+++ +V + E NI ++ Sbjct: 405 EIINVETNRLSRLINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVE 464 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L +A+ + Q+ ++ NA+ ++ + V+L A G SVK+ G I Sbjct: 465 TDIHPDLPVIMANEDLIKQVLINLVDNAIKYTPENGRVVLSATPSGGGLKVSVKDTGIGI 524 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 P + +F RF V A + G GLGL+IV+ + HGG + + S Sbjct: 525 PPESMSRLFERFYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVES 572 >gi|149377907|ref|ZP_01895635.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149357797|gb|EDM46291.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 640 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +TE +K D +KN F+ VS+ELR+PLT+I G LL + +G L K S+ Sbjct: 402 ITEDISERKKVDHLKNEFISTVSHELRTPLTSISGSLGLLANNAVGELPEKASKLAHIAY 461 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S L L+ND+LD+ + AG M VL DL++E ++IAT + +I ++V S+ Sbjct: 462 RNSQQLTFLINDLLDMEKLVAGKMPFRSEHYVLQDLVHESVENIATFAQQRDIDLQV-SE 520 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + DRQRL Q + +LSNA+ FS GS+V + A++ ++++G + Sbjct: 521 LPAVTVHVDRQRLNQAITNLLSNAIKFSPAGSSVDIFASQREESVRLCIRDHGEGVAPHF 580 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 + +F +F S A RR G GLGL+I + G V S EG T Sbjct: 581 REHIFQKF-SQADASDRRASGGTGLGLAITRELMTRMDGTVDYESIPGEGAT 631 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV--------TDSVRAERALTEKN--- 559 R + T++ L+ EY + P +A+ +L V +VRAERA E Sbjct: 685 RAGEEATIQGLNSGADEYLVKPF-SAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRF 743 Query: 560 -EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASS 617 E R+A ++ + VS++LRSPLT I +LL+ G ++ + + I S+ Sbjct: 744 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 803 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L++D+LDLA++DAG + + +++L+ + ++ E +++ + L Sbjct: 804 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 863 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735 D++R+LQ +LSNA+ F+ G +++L+A + G D SV + G IP Sbjct: 864 -ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQ 922 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F+R+ +R G GLGLSI + + HGG + + + +T + +PS + Sbjct: 923 PHIFDRYWHGVQ-NKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 978 Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 124/245 (50%), Gaps = 8/245 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S RA ++ E L D+ K +F +VS+E R+PLT I+G + + +L ++ Sbjct: 1317 SARAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK- 1375 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ + ++ L +VN +LD + ++AG + +Y + L+ + + + + + + Sbjct: 1376 --LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGL 1433 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNN 726 R+ V D + ++ +LSNA+ ++ +G V+L+ D+ + +V++ Sbjct: 1434 RLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHA--VLTVQDT 1491 Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE+ VF RF A +G+ G G+GL++V+ + LHGG +S+ S+ T Sbjct: 1492 GVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAF 1551 Query: 785 NCRIP 789 R+P Sbjct: 1552 TLRLP 1556 Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615 ++ EAL + D K +F +VS+ELR+PL ++G D L+ ++ L KQ + E + Sbjct: 320 KRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEY-PLPPKQRERQEVVHR 378 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L LVN +LD A ++AG + ++ L+ L E+ + + M + + V Sbjct: 379 NGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPV 438 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734 + D ++ +LSNA+ F+ +G I A R GD + +V++ G+ +PE Sbjct: 439 LPEAVYVDPAMWEKVVLNLLSNALKFTLQGEVRI--ALRWLGDRVELTVQDTGTGMPEAE 496 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GL++V+ + LHGG V++ S +T +P+ Sbjct: 497 LPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPA 554 Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 12/291 (4%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE---KNEALRKADE 567 R + T+E L +Y + P + ++ D R R + + + LR++ Sbjct: 1701 RAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEIEKKVLRESVR 1760 Query: 568 IKNSFVQHVSYELRSPLTNI-IGFTDLLKT--SKLGSLNSKQSQYVEYISASSTI--LLN 622 +++ F+ VS+ELR+P++ + + F L+++ + G S ++ V+ + + L Sbjct: 1761 VRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLAR 1820 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV +LD + G +KL + L+ + + V + +K + + + + + Sbjct: 1821 LVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLNAPSPVMGYC- 1879 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNR 741 DR RL Q+ +L NA+ F + G + + RD+ + +V ++G+ I PED + +F R Sbjct: 1880 DRARLHQLLEGLLDNALKFGA-GKPIEVAVWRDSDHALLTVMDHGAGIEPEDE-ERIFGR 1937 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F G GLGL I H G + + ++ G T +P E Sbjct: 1938 FERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 1988 >gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 899 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 134/250 (53%), Gaps = 26/250 (10%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD +K F+ +S+ELR+P+T I GFT LL LG LN Q ++V I +++ ++ L Sbjct: 650 EADRLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPLNDTQREFVNTIHSNTERMIAL 709 Query: 624 VNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 +ND+LD+ +++G + L + ++ VL+ +++EV+ +++ + HE I I + Sbjct: 710 INDVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIP----PGMPL 765 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS------------V 723 AD RL QI +LSNA+ ++ KG + ++A A + D++ S + Sbjct: 766 VRADAHRLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNI 825 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G I + +F+RF N + + G GLGLS+V+ + L G + + S+ Sbjct: 826 RDTGVGIDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQG 885 Query: 782 TTINCRIPSK 791 +T + +P+ Sbjct: 886 STFSLLLPTP 895 >gi|229017311|ref|ZP_04174215.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273] gi|228744012|gb|EEL94110.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273] Length = 392 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618 + + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + Sbjct: 167 DKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTDEEIKQGMGI--ISGETD 224 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L++LV ++LD + + + L + L D+L E + K E +I+++++ + Sbjct: 225 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEK--QIQLVANLERV 282 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 V DR RL Q+F I+ NA+ +S++ T+ ++AA+ G + V + G I ++ + Sbjct: 283 ELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQGIGIAKEHLPFI 342 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F N+H G G+GL+IV+ + LHGG +SI+S + TTI ++P Sbjct: 343 EQSFYQINSH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 391 >gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 583 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 6/263 (2%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A + + +++ R E+ L A A++ K+ F+ ++S+ELR+PL IIGF+++L Sbjct: 283 QAMIIGVYRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEML 342 Query: 595 KTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 +L + KQ +Y I +S LL++VN ILD++ + +G L IVL L+ Sbjct: 343 ADPQLCPQDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIAS 402 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILK 711 + + I + I VAD+Q QI +LSNA+ F+ + T+ + Sbjct: 403 CCAMLRPQAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVD 462 Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 D D I +V++ G I D + F R +R G GLGLSIV + LH Sbjct: 463 CVVDCLDDIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELH 522 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG + I S + T++ R+P + Sbjct: 523 GGTLLIESEPDQGTSMIVRLPRE 545 >gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 511 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 14/251 (5%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ T LG LN+ Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLNNPT-- 299 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + Sbjct: 300 YKEYTVDIHRSGEHLLNLINEILDLSRIEAGRYELNEEAVNLVEIAEDCIGMVQLRARGK 359 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723 NI I+ + + S D + + Q+ +LSNA+ F+ G + +K G +I S+ Sbjct: 360 NITIEPQFEQAMPSVWIDEKAMRQVALNLLSNAVKFTPAGGEITVKVGWTAGGGQYI-SI 418 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 K+NG IPE+ V + F S A + +G GLGL IV++ + H G + S EG Sbjct: 419 KDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLREG 478 Query: 781 VTTINCRIPSK 791 I P + Sbjct: 479 TEAIAILPPRR 489 >gi|124266005|ref|YP_001020009.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124258780|gb|ABM93774.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 975 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 27/287 (9%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA-------DEIKNSF 572 +++YS++P+ + + F+ N+TD RAE + KN L++ D+ K+ F Sbjct: 125 LIDYSLLPIRDNSGKIVFLLPEGRNITDKKRAEAEIARKNRELQRLLDKIQRLDDAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 +VS+ELR+PL I+G ++ LL TS+ L+ Q + + I ++ +L+ VND+LDLA Sbjct: 185 FANVSHELRTPLALILGPSESLLATSE--GLSDAQRRDLRVIQRNAAMLMKHVNDLLDLA 242 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLL 688 DAG M L Y+ + DL EV+ A E ++ V + L V D+Q Sbjct: 243 KFDAGKMALRYTRV---DLAAEVRTLAAHFEAVAAERSLSYVVQAPAALEVEV-DQQMFE 298 Query: 689 QIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 +I +LSNA F+ G A + V+++G + D+ + +F RF A Sbjct: 299 RILLNLLSNAFKFTPDFGRIRCSLEANPDHSIQLVVEDSGCGVRADLREEIFERF-HQAQ 357 Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G R G GLGL+I + F++LH G +S+S + G +PS+ Sbjct: 358 SGTTRSFSGTGLGLAIAKEFVDLHTGTISVSDAIGGGAQFRVELPSR 404 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 59/280 (21%), Positives = 124/280 (44%), Gaps = 29/280 (10%) Query: 529 SIIP----LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELR 581 S+IP LP T++T V ++T RAE L + +AL + + +++E+ Sbjct: 705 SLIPGTSDLP--PTLITVVEDITTQKRAEVELAQTKDALARVSRVTTMGELAASIAHEVN 762 Query: 582 SPLTNII--GFTDL--LKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAG 636 PLT ++ G L L T L + + Q + + ++ ++ + L + D Sbjct: 763 QPLTAVVVNGHACLRWLSTEPRNDLEVQDAIQRIVRDANRASEVIARIRGFLKRSKTDRT 822 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 ++ ++ V+ D++ + S+ + +++ D L AD +L Q+ ++ Sbjct: 823 MVCMDN---VVEDVIGLARDSLRSA----GVQLIKHVDSDLPRVFADSVQLQQVILNLMM 875 Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 N ++ +T+ L+ + GD SV ++G+ + + +F F + + Sbjct: 876 NGIEAMGSCATLERQLELRVVKHGGDIDVSVSDSGTGLVTADFERIFEAFYTT----KPD 931 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G+G+GL+I S + HGG + ++ T+ R+P E Sbjct: 932 GMGMGLAICRSIVEAHGGRLWAQANKTQGLTLQFRLPIAE 971 >gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] Length = 1406 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 20/260 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA R+L ++ L+ + + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 939 RARRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNLTPKQVEF 998 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + + LL L+N+ILDL+ V+AG M+LN S + ++ L++ V+ S E + Sbjct: 999 AQTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEKGLAF 1058 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-----------RDN 716 V +S D QRL Q+ +LSNA+ F+S G ++++ A D Sbjct: 1059 AVEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDTFTDP 1118 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + I FSV + G IPED + +F F RR G GLGLSI + L GG + Sbjct: 1119 DEVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIR 1178 Query: 774 ISSS-DEGVT---TINCRIP 789 +SS+ EG T + R+P Sbjct: 1179 VSSTVGEGSTFTLLLPVRLP 1198 >gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 1120 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 14/243 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + E+ L E +A K+ F+ +S+E+R+P+ ++G +++K +KL + +Q Sbjct: 587 IETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTKL---DQQQMH 643 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++E +S+ LLN++NDILD + ++AG + + L LL EV +S A K +NN Sbjct: 644 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKAEQNNTI 703 Query: 669 IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFS 722 + I D L V+D RL QI S ++SNA+ F+ G V+ + D + S Sbjct: 704 L--ILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFDGKIVVTAKIDETTDGTSLVCS 761 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779 + + G I + ++F+ F R+ G GLGL+IV+ L GG VS++S +E Sbjct: 762 IIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTSMLNE 821 Query: 780 GVT 782 G T Sbjct: 822 GST 824 >gi|60681363|ref|YP_211507.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] gi|60492797|emb|CAH07571.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] Length = 637 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R++ AL E + +++ +K++F+ ++S+E+R+PL I+GF+D+L + GS Q Sbjct: 397 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 454 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I ++S +LL L+NDILDL+ ++A + L + L + S+ E+ Sbjct: 455 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 514 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 R + + K SFV D QRL Q+ +L+NA F+ G+ T+ + ++ +F+V Sbjct: 515 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 572 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G IP++ K VF RF Q G GLGLSI + ++ GG + I EG Sbjct: 573 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYEG 627 >gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 894] Length = 468 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 199 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 258 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 259 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 318 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 319 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 377 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 378 NGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 437 Query: 784 INCRIPSK 791 + +P+K Sbjct: 438 VIAILPAK 445 >gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 736 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 128/229 (55%), Gaps = 2/229 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E +L E +A+ K+ F+ ++S+ELR+PL ++IGF+ +L+T+ L+ K+ +Y Sbjct: 493 KGEESLIEGRIVAEEANRTKSEFLANMSHELRTPLNSVIGFSQVLETNSSNHLDDKEQKY 552 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I S + LL L+N+ILD++ V++G M T+ L +++++ + + ++ + Sbjct: 553 VKNIYESGSHLLELINNILDISKVESGKMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDL 612 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + DR + +I +LSNA+ F+ + TV + + N +F SV + G Sbjct: 613 HLNIKSEDLEIHVDRLKFKEIMYNLLSNAIKFTPEKGTVSVNSKCVNKNFQISVSDTGIG 672 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +P++ +S+F+ F R G GLGL++V ++ +HGG + + S Sbjct: 673 VPKEKFESIFDPFKQVDSTSSRSFGGTGLGLALVRKYVEMHGGEIWVES 721 >gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 548 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N LR+A+ +K+ F+ +S+E+R+PL+ I+G +LL+ +G LN +Q + + I Sbjct: 152 LARTNAELRRANRLKDEFLAGISHEVRTPLSAILGLAELLRAKIVGPLNDEQVEMLSRIE 211 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKV 671 AS LL ++ND+LDLA ++AG +L + + + + + +A + H+ R+ + Sbjct: 212 ASGRHLLAVINDLLDLAKIEAGRFELEPRLVAAHQVCRSSLLMVKELALRKHQ---RVHI 268 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSS 729 D K+ AD +RL Q +LSNA+ F+ G V L D I +V + G Sbjct: 269 NLDPKVEVLHADERRLRQALINLLSNAVKFTPPGGDVGLDLEGDPEQEIVRITVWDTGIG 328 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + +F F + N ++ + G GLGL +V LHGG VS+ S Sbjct: 329 IAAEDIPRLFQPFSQIQNKYQHDQAGSGLGLVMVARLAELHGGGVSLVS 377 >gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 775 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 100/402 (24%), Positives = 178/402 (44%), Gaps = 43/402 (10%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478 TV+ DL + + I+ + E ++ D R+ L N F+ L K E+ ++ GT Sbjct: 371 TVEADLRLR---------DAIETIPEAFVLWDADDRLVLCNSHFQRLHKLPESAVAAGTS 421 Query: 479 --------HIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKSLQGTLELLSDSV 525 + I A + G F A + + + R G + + +D Sbjct: 422 YETVIEVGRMHEICARPPETGTTAPGARTFEAQLDNGCWLNISERRTKDGGYVSVGTDIT 481 Query: 526 ---------------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 L ++I L Q L + + A++ EK+ A A+ K+ Sbjct: 482 RIKEHEQKLVDNDLRLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRA-EDANRAKS 540 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILD 629 F+ ++S+ELR+PL IIGF++++ G+L S K S+Y I S LL ++ND+LD Sbjct: 541 KFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVINDVLD 600 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689 ++ ++AG MKL+ + L+ L E + + + + + V D + + AD + + Q Sbjct: 601 MSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADHRAVKQ 659 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747 I +LSNA+ F+ G V+ ++ ++ + G I + + F V + Sbjct: 660 IIVNLLSNAVKFTPDGGRVMARSQVFANSVALTIADTGIGIAPHSLRKLGKPFEQVESQL 719 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I +S +NLHGG + + S T + +P Sbjct: 720 TKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLP 761 >gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1] gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1] Length = 1085 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 9/247 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F +++ V ERAL A +A E K++F+ +S+E+R+PL ++G +LL ++ Sbjct: 473 LCAFTDISTRVEIERALERARSAADEASEAKSTFLSTMSHEIRTPLYGVLGTLELLTATR 532 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+S+Q QYV I SS ILL L++DILD++ ++AG +KL +L+ + S Sbjct: 533 ---LDSQQRQYVNRIEGSSQILLQLISDILDVSKIEAGQLKLERLAFSPRELVQDCTGSY 589 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARD 715 A + + + G S D R+ QI S ++SNA+ F++ GS ++ L + Sbjct: 590 AAMAQQKGLLFFSAVDTGIPDSVFGDPVRVRQILSNLISNAIKFTNVGSVIVRCLVVDQP 649 Query: 716 NGDFIFS--VKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G V ++G I + +F F + + R RG GLGLSI L G + Sbjct: 650 PGHVTLQIEVADSGVGIDREEQNRLFTPFYIVDGSRHVVRGAGLGLSICARLAELMGSSM 709 Query: 773 SISSSDE 779 + S + Sbjct: 710 QVKSEKQ 716 >gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1380 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 11/265 (4%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQH 575 ++V E I P N + ++ N+T+ R E+ L ++ N L KA +K+ F+ Sbjct: 840 NTVFEARIAPSANDEVVMVIRNITERKRIEQTLQQQTDELSIANAELAKAARLKDEFLAS 899 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+ELR+PLT I+ FT+ L+ + G+LN Q+Q ++ I +S LL+L+NDILDL+ ++A Sbjct: 900 MSHELRTPLTGILAFTEALRYDQYGALNQAQAQALQQIDENSRHLLDLINDILDLSKIEA 959 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G + +N+ +++++++ + + + + AD +RL Q+ +L Sbjct: 960 GKLTINHQSMLIDEICQASIRMVQKLAQNKQLELLYEPCAADAMLCADSRRLKQMLVNLL 1019 Query: 696 SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 SNA+ F+ G + L D+ +V + G I +F F + + Q Sbjct: 1020 SNAVKFTPAGGRIGLSVKLDSQFHQVELTVWDTGIGINTQDIPKLFRPFSQLDSKLSRQY 1079 Query: 752 RGVGLGLSIVESFINLHGGHVSISS 776 G GLGL++V NLHGG V + S Sbjct: 1080 AGTGLGLALVYHMANLHGGRVELQS 1104 >gi|332559988|ref|ZP_08414310.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N] gi|332277700|gb|EGJ23015.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N] Length = 520 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 16/292 (5%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242 L + L+ + + ++W G+++WAN +Y K + R Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLHEA-------AKRLPPDRD 197 Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297 L R+ +A + +E G ++ + + + G A+ V Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255 Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357 E T+ D + + +L + +AIFDQ+R L N + ++L + LA PS LE Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315 Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415 LR +PE ++ +W+ I + K++ + + +TW LP+GQT VI +P G M Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375 Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 FE+++ ++ +Y +++ +D + + +AVF P G + ++N A+ +LW Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427 >gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 623 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K F+ +VS+ELR+PL IIGF+++L +L + KQ +Y E IS S LL +VN I Sbjct: 359 KTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTI 418 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ +++G M++ L L+++ + K ++ + + + VAD++ Sbjct: 419 LDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRAC 478 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI +LSNA+ F+ V ++ A + SV ++G I P D+ + F ++A Sbjct: 479 KQILLNLLSNAVKFTPANGKVKIRLAPEGNHLGISVIDSGIGIAPADLARLGDPFFQASA 538 Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 H G GLGLS+V + LHGG +++ S+ T++ R+P Sbjct: 539 SHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLP 582 >gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 595 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 32/354 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV DG I ++NP F W E+N N+ A + + +L Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNM--------NVQADD---HLPPEAKEL 310 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F + + ++ + ++ TL+ S +L + PL AQ+ +V +V R +TE+ Sbjct: 311 FQNTVNT--EKEQMIEMTLQGRSWVLL---MSPL-YAQS-----HVRGAVAVLRDMTEE- 358 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + + + I S Sbjct: 359 ---RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEDDRKEIAQIIYDESLR 414 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA +++G L+Y + L++ L ++ + + E NI + Sbjct: 415 MGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNISLTDDISLNETE 474 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F D ++ Q+F+ ++ NA+ + G TV + VK++GS IPE+ +F Sbjct: 475 FAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDGLKIDVKDSGSGIPEEDLPFIF 534 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF A R G GLGL+IV++ + H G +++ S + TT IP+K Sbjct: 535 ERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588 >gi|229023488|ref|ZP_04179984.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272] gi|228737756|gb|EEL88256.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272] Length = 438 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618 + + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + Sbjct: 213 DKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTDEEIKQGMGI--ISGETD 270 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L++LV ++LD + + + L + L D+L E + K E +I+++++ + Sbjct: 271 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEK--QIQLVANLERV 328 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 V DR RL Q+F I+ NA+ +S++ T+ ++AA+ G + V + G I ++ + Sbjct: 329 ELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQGIGIAKEHLPFI 388 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F N+H G G+GL+IV+ + LHGG +SI+S + TTI ++P Sbjct: 389 EQSFYQINSH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 437 >gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 920 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 179/396 (45%), Gaps = 27/396 (6%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 ++T QV+ E ++ +D++ E + VF +G+ + N R + E L G Sbjct: 499 DVTEQVNYEKHIKEQKELFEAILDNMQESIYVFDKNGKYIIKNKVARKRFSGEFKELGEG 558 Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLP 534 + + Y E + + I ++ D + Y+II P+ Sbjct: 559 YKVTEL------YDLEGNKMPIDETPIYRVKSGEIVRNNIVKFKKDDMEYYNIISGTPIY 612 Query: 535 NAQT-----MLTFVNVTDSVRAERALTE-----------KNEALRKADEIKNSFVQHVSY 578 + +++F++VTD +++++ L E KNE L +A E+K+ F+ +S+ Sbjct: 613 DNSGDFLYGVVSFLDVTDMIKSQQDLQEVQEKLLAVEREKNEGLEQAMEMKDEFLSFISH 672 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E R+PL I L + K Y+ I ++ L LVN+ILD+ V+AG + Sbjct: 673 EFRTPLNVINTAIQTLNLVYSNQMTEKIKAYMGTIKQNTNRQLRLVNNILDITRVNAGRI 732 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +N I + L + +S+ + +R+ +S D ++ +I +LSNA Sbjct: 733 TINKKNIDIVFLTKAITESVYEFASKKGVRLTFVSKLTKKIIGVDDEKYERIILNLLSNA 792 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 + F+ G ++I+ + VK+NG IP + +F RF V ++ Q G G+ Sbjct: 793 IKFTPAGKSIIVNLHSAKTNICIEVKDNGIGIPRNKIDVIFERFGQVESSLSRQAEGTGI 852 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GLS+V+ F+ GG VS+ S+ TT +P+++ Sbjct: 853 GLSLVKRFVEALGGSVSVKSNLGKGTTFKILLPNEK 888 >gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 494 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L +Q+ Y+ Sbjct: 254 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 310 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E I + Sbjct: 311 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQLRKPEGVEITLD 370 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 SD F DR RL QI +L+NA+ + KGS G + F V + G Sbjct: 371 ACSD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEAEGKMVKFYVSDTGCG 427 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGLGL+I + + GG++S+ S + +T +P Sbjct: 428 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 485 Query: 790 SK 791 K Sbjct: 486 MK 487 >gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1480 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 44/354 (12%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTE--------ENRLSPGTHIRNIAATCSR---YYNES 494 G+ V DG+I N ++ +LW E E L I + R Y+E Sbjct: 576 GILVTSLDGKILQFNESYAALWDIEVKTGLDHREFELKNRDKILDYQGVIERIASLYSEP 635 Query: 495 D--GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDS 548 D G+D+ LEL + E +P+ + + +L +F +++ Sbjct: 636 DFEGFDI------------------LELTDGRIYERVSLPMKSDEGLLGRVWSFHDISKR 677 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++ + L E A + K+ F+ +S+E+R+P+ ++G LL ++L Q + Sbjct: 678 MKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL---TDYQKR 734 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V +S+ LL L+NDILD + +DAG ++L L +L E + +A + ++ Sbjct: 735 RVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQNKSLE 794 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVK 724 + + G S V D RL Q + ++ NA+ F+SKG +I RD+GD F + Sbjct: 795 LVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKGEVLIEAGLRDSGDEWCFWCVIT 854 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I D S+F+ F R+ G GLGL+IV+ L GG VSI+S Sbjct: 855 DTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITS 908 >gi|53713096|ref|YP_099088.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215961|dbj|BAD48554.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 639 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R++ AL E + +++ +K++F+ ++SYE+R+PL I+GF+D+L + GS Q Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSYEIRTPLNAIVGFSDVLASG--GSSEEDQ 456 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I ++S +LL L+NDILDL+ ++A + L + L + S+ E+ Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 R + + K SFV D QRL Q+ +L+NA F+ G+ T+ + ++ +F+V Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + G IP++ K VF RF Q G GLGLSI + ++ GG + I E Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYE 628 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 175/371 (47%), Gaps = 33/371 (8%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-------NRLSPGT-HIRNIAATCSRY 490 D + + + GP+G I NP S+ + EE N L+P H +++ A ++ Sbjct: 282 DSAQDAIVLMGPEGEIAYWNPMAESIFGYTAEEIVGKDLHNILAPARYHEQHLKAF--QH 339 Query: 491 YNESDGWDLFAAII--TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTD 547 + ++ D I ++ D + + +L L S + L N + V ++T Sbjct: 340 FQQTGRGDAIGKTIELSALDRDGREFPISLSL--------SAVSLQNRWHAVGIVRDITR 391 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 AE + + + A+ K+ F+ ++S+E+R+P+ I+G LL+ + SL+ +Q+ Sbjct: 392 QKDAEEKIVKARDEAEAANRAKSEFLANMSHEIRTPINGIMGMMQLLEAT---SLDVEQA 448 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QYV+ S+ L L++DILDL+ ++AG M++ + L V + E NI Sbjct: 449 QYVQMGLTSARRLTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNI 508 Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 ++ D +L + D RL QI ++ NA+ F+ +G + +K + + + Sbjct: 509 ALEYSLDPQLPEILLGDETRLQQILFNLVGNALKFTEQGRVQVNWHLMKRRERDIQVLLT 568 Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G + +F FV NA+ + +G GLGLSIV+ + L G V++ S + Sbjct: 569 VSDTGIGMTPHRAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDA 628 Query: 781 VTTINCRIPSK 791 +T N +P K Sbjct: 629 GSTFNILLPLK 639 >gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] Length = 1018 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L E E +A++ K+ F+ +S+ELR+PL +I+GF LL TS+ L+ +Q +VE Sbjct: 607 EQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLSPRQQGFVE 666 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 +I + LL+L+ND+L+LA ++AG + + + L LL E + +A E +++ ++ Sbjct: 667 HIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLLE 726 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSV 723 + D L V D R QI +LSNA+ ++ G V++++ A ++ Sbjct: 727 TLGDDPLWVCV-DLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAI 785 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP D +F F G G G+GL I + + GG + S + T Sbjct: 786 SDTGIGIPADRQHRLFRPFERLGQENGPIEGTGIGLMITKELVERMGGEIRFESREGEGT 845 Query: 783 TINCRIPS 790 T +P+ Sbjct: 846 TFFVFLPA 853 >gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1002 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S +++ L EK A+ K+ F+ +S+ELR+PL I+GFT ++ ++ SL+S+Q Sbjct: 509 SKQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQ 566 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I+ S LL+L+ND+L+++ ++AG + LN + L++L+ VK+ + K + Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720 + V D +L ++ D +L QI ++ NA+ F+ G + + + + Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQ 686 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779 VK+ G I +D +++F F + Q + G GLGLSI F L GG +++ S Sbjct: 687 LEVKDTGIGINQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLG 746 Query: 780 GVTTINCRI 788 +T C I Sbjct: 747 QGSTFTCTI 755 >gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 511 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480 Query: 784 INCRIPSK 791 + +P+K Sbjct: 481 VIAILPAK 488 >gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1102 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ E+ L +A + K+ F+ ++S+ELR+PL +IG T+LL+ + L N Sbjct: 427 NIQRRKETEQKLKAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQGTHL---N 483 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q ++V+ +S LLNL+NDILD + ++AG + L+ L ++L + ++ + + Sbjct: 484 QHQQEFVDACRSSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTN 543 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI 720 E N+ + D + + D RL QI ++ NA+ F+ G V+ +R+NG+ Sbjct: 544 EKNLELPCFVDPESRLTLKGDSYRLRQILVNLIGNAIKFTDSGEVVVRTRTVSRENGNIR 603 Query: 721 --FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 FSV + G I E +F F V + G GLGL I ++ + L GG + I S Sbjct: 604 IHFSVTDTGIGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIES 663 Query: 777 SDEGVTTINCRIP 789 D +T IP Sbjct: 664 QDGVGSTFWFEIP 676 >gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1046 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 3/218 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L A K+ F+ ++S+ELR+PL + + LL ++ G+LN +Q +Y I +++ LL Sbjct: 360 LAAASRYKSEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVKYARAIHSANNDLL 419 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L+NDILDL+ ++AG ++L T+ L+ ++++ + + +++ I+ G F Sbjct: 420 ALINDILDLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQF 479 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +AD QRL Q+ +L+NA+ F+ GS + G F+V + G I + + +F Sbjct: 480 LADGQRLQQVLKNLLANAVKFTEHGSVALCIEGHGEGRIRFAVSDTGIGIAREQTEVIFE 539 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I GG +++ S Sbjct: 540 AFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLTVES 577 >gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 682 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE A E EA R IK+ F+ +S+ELR+PL IIGFT LL+ +L ++ ++ + Sbjct: 349 AESARQEAEEANR----IKDEFLATLSHELRTPLNPIIGFTQLLRKGQLDEASAARA--L 402 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ ++ D+LDL+ + G ++L + L ++ + ++ NI ++ Sbjct: 403 ETIERNARAQSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELR 462 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D + D RL Q+ +LSNA+ F+ + ++ ++ R + + +V+++G I Sbjct: 463 ARLDPNVVLPFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLERGRAEAVLTVRDSGVGI 522 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS--SDEGVTTINC 786 D VF RF R G+GLGL+IV + LHGG V + S SD+G T Sbjct: 523 AGDFLPHVFERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQG-ATFTV 581 Query: 787 RIP 789 R+P Sbjct: 582 RLP 584 >gi|317476223|ref|ZP_07935474.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907634|gb|EFV29337.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 138/256 (53%), Gaps = 10/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F++++ S + AL NE ++ +++N+F+ ++++E+R+PL I+GFT +L ++ Sbjct: 37 IMIFISISKSKHVQ-ALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTIL--AE 93 Query: 599 LGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L+ +Q +++ I+ + +LL LVND+LD + ++A M+ N + +N L+ E Sbjct: 94 TDNLDKEQRVAFLKEINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILET--C 151 Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 IA H I+ + + DR R Q+ ++ NA+ F+ +G + Sbjct: 152 IAENAHSRLPGIQAEFVEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLS 211 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 N +F F V + G I E+ +++F RFV + RG GLGLSI +S I +GG + + Sbjct: 212 NQNFYFYVADTGCGIEEESRRAIFERFVKMNY--NIRGTGLGLSICKSIIEHYGGGIGVE 269 Query: 776 SSDEGVTTINCRIPSK 791 S +T +PSK Sbjct: 270 SKKGEGSTFYFTLPSK 285 >gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus Length = 596 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ ++S+ELR+PL I+GF+D+++ G L+ + ++Y E I S LL+L+ND+L Sbjct: 328 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 387 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D++ ++A +L + + + + + ++++ V+ G+L ADR+ L Sbjct: 388 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 446 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI ++SNA+ F+ +G V + A +G V + G I PED+ + R A Sbjct: 447 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 504 Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ RG GLGLS+V +F L GG + I S TT++ R+P Sbjct: 505 GGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLP 549 >gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 762 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E +++AD +K F+ VS+ELR+PLT IIG+TD+L+ LG L+ + + + Y+ +S Sbjct: 517 EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPEVQETLHYMRQASLN 576 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ L++DIL+ + ++AG + ++ + ++ ++ V + ++ E+ + + V L Sbjct: 577 LMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLPM 636 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 A+ RL Q+ +LSNA+ F+ + +K A G+++ SV++ G I + + Sbjct: 637 IQANAGRLEQVLINLLSNAIKFNRPQGLIEIK-AETRGEWVRISVRDTGIGIAPADQERI 695 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F F V + GVGLGL+I I GG + + S+ +T C +P Sbjct: 696 FEEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLP 748 >gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 938 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ V VS+ELR+PL++++GFT+LL ++ +Q +Y+E I + L NL Sbjct: 575 EVDMMKSELVSTVSHELRTPLSSVLGFTELLLAKEIKP--ERQKKYIETIHKEAKRLTNL 632 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND LD+ +++G + + I L L+ +V ++ N I+ + + AD Sbjct: 633 INDFLDIQRIESGQQVYSMNKISLTALIEDVLKNFQIDPQHN---IRFVDESTNAIVSAD 689 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 +R++Q+ ++ NA+ FS G +I++ N S+++ G IPE S+F +F Sbjct: 690 EERIIQLLFNLIGNAIKFSPNGGEIIIRMQNINETVQVSIQDCGIGIPESAIPSLFQKFK 749 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 V N+ R + G GLGL++ + I+ H G + + S+EG+ TTI +P Sbjct: 750 RVDNSSRRKIGGTGLGLALSKEIISKHKGDIWL-ESEEGIGTTIFFTLP 797 >gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 589 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + V +VS+ELR+PLT+I GF + + + S Q Y++ I + L L+ ++L Sbjct: 362 RRDLVANVSHELRTPLTSIRGFIEAILDGTI-SDPEAQRHYLKVIHQETVRLTRLIRELL 420 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA ++AG + I +++L++ V + ++ ++ I +KV L +A+ R+ Sbjct: 421 DLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRME 480 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 Q+ + ++ NA+ +S G TV +KA DNG V + G IPE+ +++RF V + Sbjct: 481 QVLTNLVENAIRYSPPGKTVTVKAGSDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVEKS 540 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGL+IV+ + HGG V + S +T IP+ Sbjct: 541 RSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPA 584 >gi|256851856|ref|ZP_05557244.1| two-component system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260661883|ref|ZP_05862793.1| two-component system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|282931966|ref|ZP_06337430.1| two-component system histidine kinase [Lactobacillus jensenii 208-1] gi|256615814|gb|EEU21003.1| two-component system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260547352|gb|EEX23332.1| two-component system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|281303908|gb|EFA96046.1| two-component system histidine kinase [Lactobacillus jensenii 208-1] Length = 387 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 130/232 (56%), Gaps = 6/232 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ LLK SL + Q +YV+ + + Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ D T+++ K+N + + L +L +V + E NI + V + A Sbjct: 206 LANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAGFELEAEEKNISLNVNTKPDDLVIDA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ ++SNA+ + S + L A + + + V+N+G +IP++ + +F R Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENDGEAIPKEALQKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V + + G GLGL+IV+ I+LH G ++ S+D+ +T+ +P K Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITCESNDQ-LTSFIIHLPFK 376 >gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 165/356 (46%), Gaps = 9/356 (2%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDL 499 + EG A++ D R+ ++N + + + + G + + +ESD D Sbjct: 280 MQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQVAARRDESDAEADLDH 339 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A I + R+S T + L+ + + T+ +++TD + E L + Sbjct: 340 DAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGGTVTLVMDITDLKQREIELDQAR 399 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A+++K+ F+ ++S+ELR+PL IIG++ +L+ N + I + Sbjct: 400 AEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLREDAADDGNDGAVADLTKIEGAGKH 459 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+L+NDILDL+ ++AG M + I + +LL +V+ I N+ R+ V Sbjct: 460 LLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLLIEPVAARNDNRLVVACAAGASR 519 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736 V D +L Q +LSNA F +KG + L D G+ F+V + G + + Sbjct: 520 MVTDVTKLKQSLLNLLSNAAKF-TKGGLLTLSVDPDPDRAGNLCFAVSDTGIGLSPEQVG 578 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F F + R+ G GLGL+I SF + GG ++++S+ +T +P+ Sbjct: 579 RLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDIAVTSALGAGSTFVITLPA 634 >gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1098 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 129/245 (52%), Gaps = 6/245 (2%) Query: 550 RAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +AE+ + + N E L+K D++K+ F+ S+ELR+PL +IG + + G + Sbjct: 406 QAEQEVIKSNLRALENLKKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKMTQS 465 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +++ I +S L +L+NDILD + + M L+ + L +L++ V + ++E Sbjct: 466 MKKHLSMIISSGKRLSHLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSLLNEK 525 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 NIRI D + + D RL Q+F ++ NA+ ++ +G TV++ A D + + Sbjct: 526 NIRIINEIDTNIRPVLGDENRLQQVFFNLIGNAIKYTERG-TVVISAEEDGKMLQVHITD 584 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +G I D ++F+ F + + + G GLGL+I + I HGG++S+ S + +T Sbjct: 585 SGIGISADQIDTIFDAFNRGGNNSEEQSGTGLGLNITKKLIEAHGGNISVVSQEGKGSTF 644 Query: 785 NCRIP 789 + IP Sbjct: 645 SFLIP 649 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 120/257 (46%), Gaps = 39/257 (15%) Query: 554 ALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 AL E N+ L KA+E + + ++S+E +P+T + + +++ + G + + Sbjct: 850 ALKEVNDELLKANEDLIKLQNARTHMLSNISHEFGTPVTFLQSY---IQSVRAGIIEAND 906 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---- 662 + Y++ + +L L+ D+ D++ +++G + L L++ +N++ T + Sbjct: 907 AHYLKSVENKVNMLNRLIEDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRK 966 Query: 663 -----------HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 E +IRI + D R+ Q+F+ I+ NA+ +++G + + Sbjct: 967 ITLHKPVFTGNEEQDIRIDI-----------DNDRMDQVFTNIIYNAIKHTNEGGDIWIN 1015 Query: 712 AA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHG 769 +D + + +K+NG I E VF RF + G GLGL+I + I+ H Sbjct: 1016 VVVKDRQEVMIEIKDNGHGIKESDLPFVFERFFKGEKVINGKIGTGLGLAISKEIIHHHN 1075 Query: 770 GHVSISSSDEGVTTINC 786 G +S+ S+ EG I C Sbjct: 1076 GEISVKST-EGNGAIFC 1091 >gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1142 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + L ++ K+ F+ ++S+ELR+PL +I+ + +L +K LN ++ +Y I S Sbjct: 477 KADELERSGRFKSEFLANMSHELRTPLNSILILSRILGENKGARLNEEEQRYASVIYNSG 536 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+NDILDLA V+AG ++L + I LL EV+ + + + V G Sbjct: 537 NDLLTLINDILDLAKVEAGKIELVHEHISTESLLVEVRNTFQKIAENKGLELAVEKTGSC 596 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + D RLLQI ++SNA+ F+S V L + +G F V + G IP + Sbjct: 597 PDMLLTDHTRLLQILRNLISNAVKFTSAPGRVSLTISEADGYLHFEVADTGIGIPLEKQA 656 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S+F F R+ G GLGLSI +L G +S+ S+ + +IP Sbjct: 657 SIFEAFQQADGSTSRKYGGTGLGLSISRELASLFNGSISLRSTPGEGSVFTLKIP 711 >gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1200 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 12/234 (5%) Query: 555 LTEKN-EALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L EKN E L+KA+E+ K+ F+ ++S+ELR+PL +I+ + LL + +L S+Q Sbjct: 507 LEEKNLEILKKAEELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQI 566 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I +S LL L+++ILDL+ ++AG M+L+Y + + ++ +++K A E + Sbjct: 567 EYATVIQSSGNGLLGLIDEILDLSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKGL 626 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVK 724 V I +G D+ R+ QI ++SNA+ F+S+GS I ++ D F V+ Sbjct: 627 DFSVAIGNGVPPVIETDKMRMEQILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVVR 686 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G + + + +F F +R+ G GLGLSI L GG +S++S Sbjct: 687 DTGIGVAPEKQQHIFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEISLTS 740 >gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1065 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 11/257 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+ TD ++ + L + E A++ K+ F+ +S+E+R+P+ I+G L++ + + Sbjct: 668 VDNTDLLQTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQLMQDT---TQ 724 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q +YV+ S+ L L++DILDL+ V+AG M + DL V + Sbjct: 725 DREQQEYVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAGSVAELFKVTA 784 Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716 + + ++ I D G G + D R+ QI ++ NA+ +S G+ T + ++ Sbjct: 785 KDRGVSLECILDPGLPGEIIGDPARVRQILFNLVGNAVKYSEHGNVNLHMTPVPAGRNED 844 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F V + G IPED K++F+ FV + + +G GLGL+I+ L GG++SI Sbjct: 845 IRVLFIVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRRLTQLMGGNISI 904 Query: 775 SSSDEGVTTINCRIPSK 791 S++ T + +P K Sbjct: 905 DSTEGEGTAVYVALPFK 921 >gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1002 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S +++ L EK A+ K+ F+ +S+ELR+PL I+GFT ++ ++ SL+S+Q Sbjct: 509 SKQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQ 566 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I+ S LL+L+ND+L+++ ++AG + LN + L++L+ VK+ + K + Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720 + V D +L ++ D +L QI ++ NA+ F+ G + + + + Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQ 686 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779 VK+ G I +D +++F F + Q + G GLGLSI F L GG +++ S Sbjct: 687 LEVKDTGIGINQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLG 746 Query: 780 GVTTINCRI 788 +T C I Sbjct: 747 QGSTFTCTI 755 >gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E AD++K+ ++ +S+E+R+PL I GF++L+ Sbjct: 317 INIQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADS 373 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y E I ++ +L+ L+NDILDL+ ++A ++++Y + +N L++ + SI +M Sbjct: 374 DEERREYYEIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRM 433 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E +++ + F AD RLLQ+ + + +NA+ + +GS + + F Sbjct: 434 PE-GVQLFLEKGSCTCCFGADSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKCLEFY 492 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 VK+ G+ I +D +S+F RFV + G+GLGL+I + + GG + + S + Sbjct: 493 VKDTGTGIAKDKLESLFTRFVKVNDYVE--GIGLGLAICQGLVTKMGGSMHVESELGVGS 550 Query: 783 TINCRIPSKE 792 T + +PS E Sbjct: 551 TFSFVLPSHE 560 >gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15] Length = 597 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ ++S+ELR+PL I+GF+D+++ G L+ + ++Y E I S LL+L+ND+L Sbjct: 329 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 388 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D++ ++A +L + + + + + ++++ V+ G+L ADR+ L Sbjct: 389 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 447 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746 QI ++SNA+ F+ +G V + A +G V + G I PED+ + R A Sbjct: 448 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 505 Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ RG GLGLS+V +F L GG + I S TT++ R+P Sbjct: 506 GGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLP 550 >gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 131/243 (53%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +K E L + + K+ F+ ++S+ELR+PL +I+ + L+ + +L+ Q + + I Sbjct: 516 IQKKAEELEISTKYKSEFLANMSHELRTPLNSILLLSRLMAENNEKNLSDDQIESAQVIQ 575 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVI 672 +S LLNL+++ILDL+ ++AG M L Y+ + ++++ N+++ E N + ++V+ Sbjct: 576 SSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDMEALFGPIAREKNLALNVQVM 635 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730 SD D+ RL QI +LSNA+ F++KG+ + A+D F+V++ G I Sbjct: 636 SDAP-ALIETDKMRLEQILKNLLSNALKFTAKGAVTLQVTAVAQDPSIVRFAVRDTGIGI 694 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS----SDEGVTTI 784 P + + +F F + R + G GLGLSI L GG + + S E V TI Sbjct: 695 PVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLGGEIRLESEPGHGSEFVVTI 754 Query: 785 NCR 787 R Sbjct: 755 PLR 757 >gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 1291 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 9/227 (3%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +KN FV VS+ELR+PLT I G L+ LG++ Q + ++S L L+ND+ Sbjct: 1064 MKNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPDNMRQMLAIAHSNSQRLSALINDL 1123 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 LD+ + AG M + L LL + + + H+ +R++V D ++ D Q Sbjct: 1124 LDMDKLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDAQV---RVDAQ 1180 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+ + +LSNA FS G+ V ++ SV ++G IPE +F++F S Sbjct: 1181 RLAQVMANLLSNAAKFSPPGTCVDVRLQHGGEVLRVSVTDSGPGIPEAFKPRIFSKF-SQ 1239 Query: 746 AHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A G Q+ G GLGL+I + I GGH+ SS T +P Sbjct: 1240 ADSGDTRQQGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286 >gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 133/242 (54%), Gaps = 7/242 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E + IK++F+ ++S+E+R+PL +IIGF+D+L+ ++ L+ Q+ YV+ I Sbjct: 210 LVQAREEALQLSSIKSTFLSNMSHEIRTPLNSIIGFSDILRDTR---LDKDQTDYVQTIQ 266 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+++ND+LD++ ++ G+++++ + +L ++ + K E N++++V D Sbjct: 267 RCSDSLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDID 326 Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPE 732 + +F + D RL QI ++ NA+ F+ KG I L+ +G +++ V + G I Sbjct: 327 ESIPAFALGDSHRLRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYVWKVSDTGRGIRL 386 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F F R G GLGL I ++ + + GG + + S TT + +P Sbjct: 387 ENMSKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLPL 446 Query: 791 KE 792 +E Sbjct: 447 EE 448 >gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 511 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480 Query: 784 INCRIPSK 791 + +P+K Sbjct: 481 VIAILPAK 488 >gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010] gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010] Length = 1177 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 12/250 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E KNEA+ +A +K+ FV +VS+E+R+PL I+G +LLK +LN KQ Y Sbjct: 502 RTEELEKAKNEAI-EASNMKSGFVANVSHEIRTPLNGILGMHNLLKRE---NLNEKQESY 557 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + S+ LL L+NDILDL+ ++AG +++ I L D ++ S+A + + N+ I Sbjct: 558 LQMATQSAKSLLMLINDILDLSKIEAGKLEIESLPINLIDSFSQAANSMAVRAMDKNVEI 617 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIF---SV 723 + ++D K + D R+ QI + ++SNA+ F+ KG ++ A ++ G + SV Sbjct: 618 VLDLADIKHTVVIGDDLRIRQILNNLISNAIKFTDKGEIIVSAATTEDVAGARVILDVSV 677 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G I + +F F R+ G GLGLSIV + +L G + S Sbjct: 678 QDTGVGIDKAKLNQLFKAFSQEDSSTTRKYGGTGLGLSIVSNLCSLMNGECHVESEKNVG 737 Query: 782 TTINCRIPSK 791 +T + R+ K Sbjct: 738 STFSFRLSLK 747 >gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 1010 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R +++KN F+ VS+ELR+PLT I G LL + + ++++ + L+ Sbjct: 774 RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIQIALLETERLVR 833 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVNDILD+ +++G ++ DL+ +V +S+ H+++I ++++ A Sbjct: 834 LVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITLEILPTSL--QLWA 891 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 +R +LQ + ++ NA+ FS +TV L A + +F V++ G IP + +++F+RF Sbjct: 892 ERDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEQLETIFSRF 951 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + Q+ G GLGLSI +S I HGG + + S +T IP Sbjct: 952 QQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIP 1000 >gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1603 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 122/571 (21%), Positives = 243/571 (42%), Gaps = 60/571 (10%) Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNK--SYKIVRVLNSFGEAG 290 ESR L ++ +++ + + + T + +H G + + VR+L + E Sbjct: 520 ESRPLLEQAVQRSIATGEGYDMELPFTTAGGQHIWVRAVGETEFVGDQAVRMLGTLQEVT 579 Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATN 349 ++ E+ N+++ + +L NL +++FD + L N F L ++ D F Sbjct: 580 ARRELESELRRNNEVLAS--VLENLPCGLSVFDADGLLVAANAQFRSLLDLPDRLFEGPV 637 Query: 350 PSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSN 407 ++++ P+ + K I +S H+ P+G +L + Sbjct: 638 TRFEDIIRHNAEHGEYGPDDIEAKI--RTIVDRARSPVVQHQFERVRPDGTSLEIRGGPL 695 Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 P GG + + +++ + E + ++ ID + E ++ PD R+ N +R ++ Sbjct: 696 PAGGFVTTYTDISARRKAEAEVQRSAQLLRGAIDTIDEAFVLYDPDDRLVFCNDKYRRIY 755 Query: 468 KTEENRLSPGTHIRNI---AATCSRYYN---ESDGW--DLFAA-------IITSFDDERK 512 + + PGT I A +Y + D W + AA ++ + DD R Sbjct: 756 AASADLIVPGTTFEEIVRKGAERGQYVDAIGRVDDWVAERMAAHRAGNAPLVQALDDGR- 814 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572 TL ++ +P+ T+ +++T+ EA A K+ F Sbjct: 815 ----TLRIVERR--------MPDGHTVGFRIDITE-------FQRAREAAEAASRAKSEF 855 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + ++S+E+R+P+ I+G LL ++L +Q+ YV ++ LL L+NDILD + Sbjct: 856 LANMSHEIRTPMNAILGMLALLHKTELA---PRQADYVAKTEGAARSLLRLLNDILDFSK 912 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691 +A M L ++ LL ++ ++ + + + D L + V D RL Q+ Sbjct: 913 AEAERMVLEARPFRIDQLLRDLSVILSANIGGKEVEVLFDIDPTLPRALVGDAMRLQQVL 972 Query: 692 SKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 + NA+ F+++G V+ A R+ +V++ G I + +F+ F Sbjct: 973 INLGGNAIKFTAEGEVVVSVAVRERSALGVTLQIAVRDTGIGIAAENQARIFSAFTQAEA 1032 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLG++I + + L GG + ++S Sbjct: 1033 STTRRFGGTGLGVAISQRLVALMGGELQVAS 1063 >gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 671 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 131/233 (56%), Gaps = 10/233 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ L E EA KA++ K+ F+ ++S+ELR+PL I+GFT L+ S+ S++S+ QY+ Sbjct: 191 AEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYRQYL 248 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E ++ S LL L+NDIL+++ ++AG N S L LL+ + + + ++ + + Sbjct: 249 EIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLI 308 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDF---IFSVKN 725 L ++ D +L Q+ +L N + F+ S G T+ +K D+ ++ +++ Sbjct: 309 FDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDYQRLLWEIED 368 Query: 726 NGSSI-PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I PE++ K +F F + R ++G GLGL I + F+ L GG + +SS Sbjct: 369 TGLGIAPEEIYK-LFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSS 420 >gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 244 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 303 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 304 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 363 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 364 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 422 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 423 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 482 Query: 784 INCRIPSK 791 + +P+K Sbjct: 483 VIAILPAK 490 >gi|113477259|ref|YP_723320.1| histidine kinase [Trichodesmium erythraeum IMS101] gi|110168307|gb|ABG52847.1| histidine kinase [Trichodesmium erythraeum IMS101] Length = 1121 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T++ +VT + L +KN L + + +K+ F+ +S+EL++PLT ++G + LLK Sbjct: 338 TLVLAQDVTKQHLVAKELQDKNTDLIRLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQ 397 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LG+LN +Q+ Y I S L+ ++NDILDL ++ G M+L + + + + Q Sbjct: 398 TLGALNKRQTHYATLIHQSGRHLMAVINDILDLTRMETGQMELIPEPVEIRKVCDRAFQE 457 Query: 658 IATKMHE-----------NNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 H+ ++IR K + L +AD RL Q+ +LSNA+ F+ Sbjct: 458 ALQLQHKRPQGQSSAIFSDSIRAKYTLEIEKDLDIIIADELRLRQMLVNLLSNALKFTPI 517 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 + LK AR F+V + G IP + +F +F + N + G GLGL + + Sbjct: 518 DGKMGLKVARWEKWITFTVWDFGIGIPANKQHLIFQKFQQLENPLIREFEGTGLGLVLTQ 577 Query: 763 SFINLHGGHVSISSSD 778 LHGG V+ S + Sbjct: 578 RLARLHGGDVTFISQE 593 >gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis C6786] Length = 764 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%) Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592 LT + + R ER +L +A R+AD +K+ + VS+ELR+PL I G+ + Sbjct: 359 LTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIE 418 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+ G+L Q Q ++ I S+ L +V DILD +++ G ++L+ + L ++N Sbjct: 419 VLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +V ++ T + + V D L + + D +RL Q+ S +LSNA F+ +G V + Sbjct: 476 DVTGALGTAAQAEGLDLTV--DCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 R + V + G I + VF F + RRG+GLGLSIV LH Sbjct: 534 SLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELH 593 Query: 769 GGHVSISSSDEGV-TTINCRIPS 790 GG V ++S+ + + TT +P+ Sbjct: 594 GGKVEVASAGKRLGTTFTVTLPA 616 >gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 1140 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 VT +++ A E + EAL + D K +F + S+ELR+PLT ++G + L T G Sbjct: 323 QVTAALKGANAYEEERRRAEALAELDRAKTAFFANASHELRTPLTLMLGPLEDLLTGDAG 382 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L ++Q + +E S LL LVN +LD + ++AG + +Y L + ++ S + Sbjct: 383 PLTARQQEVLEMAHRGSLRLLRLVNTLLDFSRLEAGRAQASYVPTDLATVTADLASSFRS 442 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 M +R V D + ++ +LSNA F+ G V + A++ + + Sbjct: 443 AMERAGLRYGVEVSPLSEPVYVDPEMWEKVVLNLLSNAFKFTLSGE-VAVTLAQEGREAV 501 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR----RGVGLGLSIVESFINLHGGHVSI 774 V+++G IP +F RF HR GQR G G+GL++V + LHGG V + Sbjct: 502 LRVRDSGVGIPAAELGRLFERF----HRVEGQRGRSFEGTGIGLALVREIVALHGGRVEV 557 Query: 775 SSSDEGVTTINCRIP 789 S++ TT R+P Sbjct: 558 QSAEGQGTTFTVRLP 572 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 8/250 (3%) Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 M+ FV +VT+ RAE AL + NE L +++ F S++L+ P+ + F LL Sbjct: 888 MVGFVRDVTERKRAETALRQANEELSRSNAELERFAYIASHDLQEPIRTVGSFAGLLARR 947 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L+ + QY+ + + + LV+D+L + ++A + + LN ++E Sbjct: 948 YGDVLDERGRQYLHTVELGALRMKTLVDDLLVFSRLNAA--HPPFQLLDLNVPVHEALAR 1005 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD 715 + + E R+ V G L + D RL Q+F +++NA+ F +G V + AAR Sbjct: 1006 LDMTLQETGARVTV---GDLPTVYGDPSRLAQLFQNLIANAVKFRREGVPPEVTIGAARA 1062 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + +V +NG I + +F F R + G GLGL+I + + HGG + + Sbjct: 1063 GNLWHLTVSDNGIGIEQAYFTRIFEMFQRLHSRDRYEGSGLGLAICQKIVAQHGGQMWVE 1122 Query: 776 SSDEGVTTIN 785 S+ +T + Sbjct: 1123 STPGAGSTFH 1132 >gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 773 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 22/365 (6%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYY----- 491 E + +S + +F P G + L N A R+ E+ L PG + I AA +R Sbjct: 412 EATELMSAAMLLFDPQGILVLINSACRAALPDLEDILHPGLSFIELRAAIVARRLFVQAI 471 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 ES G + E + G L+ S + T++ ++T+ R Sbjct: 472 TESQG-GIKGGTPGPAPIEVRGKDGRWLLIRQSATS-------SGYTLILGTDITELKRR 523 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ERAL + E A+ K+ F+ ++S+ELR+PL IIGF+D+ + G L++ YV+ Sbjct: 524 ERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDITRHQMFGRLDNPV--YVD 581 Query: 612 Y---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I S T LL +++DILDLA ++AG + L+ + L++ Q + + I Sbjct: 582 YARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVDSAIQMVTPRATSKRIA 641 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727 + + G L D RL Q+ +LSNA+ ++ + V + A GD SV + G Sbjct: 642 LTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTARLAGGDGLAISVIDTG 701 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E + F V + + ++ G GLGL + H G ++I+S TT+ Sbjct: 702 IGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQGCLTIASRPGEGTTVT 761 Query: 786 CRIPS 790 +P+ Sbjct: 762 ILLPA 766 >gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185] Length = 631 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 127/243 (52%), Gaps = 8/243 (3%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + +EA+ KA++ +K++F+ ++S+E+R+PL I+GF+++L + +Y Sbjct: 393 KAYSRSSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPEV---DDREEMREY 449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L+NDILD++ ++AG + I +N + E++QS+ ++ + + Sbjct: 450 TDIIETNTNLLLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLKNDAVTF 509 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D+ RL+Q+ S + NA+ F+ GS + +D F V + G Sbjct: 510 TFCERLPECMLYIDKNRLMQLLSNFIVNAIKFTKSGSIRMGYRMKDINTIYFYVSDTGCG 569 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + C+ VF RFV + +G GLGLSI + G + ++S + +T +P Sbjct: 570 MSPEQCRHVFERFVK--YNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGKGSTFWFTLP 627 Query: 790 SKE 792 ++ Sbjct: 628 YRK 630 >gi|22651420|gb|AAL13332.1| bZIP histidine kinase [Pseudomonas mendocina] Length = 973 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 23/283 (8%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572 +++S++P+ + Q + F+ N+TD +AE L KN E +RK D K+ F Sbjct: 125 AVDFSLLPIRDEQENIVFLLAEGRNITDKKKAEAMLALKNHELEQLVERIRKLDNAKSDF 184 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 VS+ELR+PL+ I+G + + ++ G S + E I ++ LL VN +LDLA Sbjct: 185 FAKVSHELRTPLSLILGPLETIMEAESGR-GSPYWKKFEVIQRNAMTLLKQVNTLLDLAK 243 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQ 689 +DA M L+Y L+ L + + + +I + D +L + D ++ + Sbjct: 244 MDAQQMGLSYRRADLSQLTRVISSNFDGIAQQKSITL----DAELPPHLIAEVDCEKYER 299 Query: 690 IFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 I +LSNA F+ G + + + +V ++G IP+++ K +F RF Sbjct: 300 IILNLLSNAFKFTPDGGLIRCHLSLSQPAHALITVSDSGPGIPQNLRKEIFERFHQLNQE 359 Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ+ +G GLGLSIV+ F+ LH G +S+S + G ++P Sbjct: 360 GQQANQGTGLGLSIVKEFVELHHGTISVSDAPGGGALFQVKLP 402 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%) Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDN 716 N + + VI+ L + + D ++ Q+ + N+++ S+ + A N Sbjct: 843 QSNGVSLNVIAGDTLPAIMGDAVQIQQLVINLAMNSIEAMSQVGCETRQLALSFSSNASN 902 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I VK+ G IPED +FN F + ++ G+G+GL+I + +H G + S Sbjct: 903 DALIICVKDTGPGIPEDQIGQLFNAFYTT----KKEGLGMGLAICLTIAEVHNGKIWAES 958 Query: 777 SDEGVTTINCRIP 789 G IP Sbjct: 959 PPAGGACFFVSIP 971 >gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 885 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 133/235 (56%), Gaps = 11/235 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L K EA KA++ K+SF+ ++S+E+R+PL IIG +D++ +K L + Q++Y++ Sbjct: 368 KILQAKQEA-EKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAGTK---LTATQNEYLQT 423 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I SS LL L+NDILDL+ +++G + + + + +++ + + K+ E N+ ++V Sbjct: 424 IETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYDTLTIVLAKIAEKNLTLEVE 483 Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNNGS 728 D ++ D R+ Q+ +LSNA+ F+ +G ++ + + D+ + S+ ++G Sbjct: 484 IDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDLLISIHDSGI 543 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEG 780 I ++ + +F+ F R G GLGL+I + I L GG +S IS EG Sbjct: 544 GIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITLMGGEISLISEKGEG 598 >gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1361 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 ++ L ++ L +A + K+ F+ ++S+ELR+PL II ++L+ + G L+ + + Sbjct: 690 SQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDETGRLDQESIERT 749 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + LL L+NDILDL+ V+AG M+++ T+ +L+ E++ E I ++ Sbjct: 750 RVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPLFRDSAQEKKIELR 809 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGS 728 D G F +D Q+++QI +LSNA+ F+++GS ++ A D+ + SV + G Sbjct: 810 -FDDQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGSVILRLAKSDHPQYPIRLSVTDTGI 868 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I +D +F F + + Q G GLGL+I F L G V + S + + Sbjct: 869 GISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEVELHSEEGKGSQFTL 928 Query: 787 RIP 789 +P Sbjct: 929 LLP 931 >gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 643 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 109/408 (26%), Positives = 181/408 (44%), Gaps = 63/408 (15%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 N T+Q + E KY ++ ++ EG+ PDG ++ +NPA ++ + S Sbjct: 234 NKTLQ-EAEEKYRSI-------FENAIEGIFQATPDGVLRRANPAMARIFGYD----SLD 281 Query: 478 THIRNIAATCSRY--------------------------YNESDGWDLFAAI-ITSFDDE 510 + N+ + SR Y DG ++ ++ + DE Sbjct: 282 EFLSNVRSLSSRIMVNPDHMQGFFDRVRDQGEVKRFEAEYYRRDGKTIWGSLNARAIHDE 341 Query: 511 RKS---LQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 R + + G LE ++D E + L L D V R L E N+ LR+ D Sbjct: 342 RGNFVFVDGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLVNKARELEEANQRLRELD 401 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLK----------TSKLGSLNSKQSQYVE---YI 613 E+K++F+ VS+ELR+PLT+I+GF LL S G+L K + E I Sbjct: 402 EMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGALARKGKRIRENLAII 461 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L L+ND+LDL +++G M + +N+++ S++ + + ++ Sbjct: 462 SHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSVSGMFAQTTLELRTEI 521 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 L VADR R+ Q+ +L+NA F+ KGS V L+A V + G+ I PE Sbjct: 522 QPGLPHIVADRDRMQQVLINLLNNASKFTEKGS-VTLRAFPRFSQLRVEVVDTGTGIHPE 580 Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 D + +F +F + + +G GLGL+I I +GG + + S Sbjct: 581 DQSQ-IFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWVES 627 >gi|153839227|ref|ZP_01991894.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810] gi|149747255|gb|EDM58243.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810] Length = 566 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++LG Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S +L ++ND+LD + ++AG+M++ +DL + A K E I + Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG + D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422 Query: 788 IPSKE 792 IP KE Sbjct: 423 IPLKE 427 >gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 940 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 12/253 (4%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I+ + A +LT+ + S R ++ EK EA +A K+ F+ +S+E+R+P+ I G Sbjct: 532 IMLMAAAAFILTYRSKMRS-RIMQSELEKAEAKSRA---KSEFLSQMSHEIRTPMNAITG 587 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 TDLL+ + L + ++ I ASS +L+L+NDILD++ ++ G + + L + Sbjct: 588 LTDLLRMEE--KLPDGAREKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTE 645 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL+ + + + + E I + + + + D RL Q+ + +LSNA F+ G V Sbjct: 646 LLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVT 705 Query: 710 L---KAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763 L + RD G++ FSVK+NG I +D K +F F A + G GLGL I S Sbjct: 706 LTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSS 765 Query: 764 FINLHGGHVSISS 776 I GG++ + S Sbjct: 766 IIKAMGGNLMVES 778 >gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168] gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 177/355 (49%), Gaps = 34/355 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N + G ++ + + Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 LF +++ ++ + ++ TL+ S +L + PL A++ +V +V R +TE+ Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + + + I S Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LVND+LDLA +++G L+Y I +N+ L ++ + + E NI + Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEE 473 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F+ D ++ Q+F+ ++ NA+ +S G +V + +K++GS IPE+ + Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF A R G GLGL+IV++ + H G +++ S + TT + IP+K Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTK 588 >gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 646 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 12/259 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPL 584 N Q + + TD +RA TE+N+ L+ A+ K+ FV VS++LRSPL Sbjct: 380 NGQPVRVVGSTTDISDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPL 439 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G++ LL+T +L ++ +E I ++ L+ D+LD++ V G ++L + Sbjct: 440 NAILGWSQLLRTRQLDETTFTRA--LETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQ 497 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L ++ ++ NI +K + D + D RLLQ+ +LSNA+ F+ Sbjct: 498 VDLAAIIGVAIETAYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPP 557 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 + ++ + + + +V + G I + VF+R+ + ++ G+GLGL+I Sbjct: 558 EGQITVQLSYTDSEAHITVTDTGIGIKSEFLPYVFDRYRQADCQHKQHGLGLGLAIARYL 617 Query: 765 INLHGGHVSISSSDEGVTT 783 I LHGG + ++S EG T Sbjct: 618 IELHGGAIHVTSPGEGQGT 636 >gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 399 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 140/261 (53%), Gaps = 18/261 (6%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYE 579 E I PL + +++ AE+ ++ + L+ A D +K++F+ ++S+E Sbjct: 133 ENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHE 192 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL I+GF+ L+ + + +++QY E I +S +LLNL NDILDLA+++A +K Sbjct: 193 IRTPLNAIVGFSKLITYA---TSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLK 249 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698 N I L D+ +++Q K +N +++ ++ D + + D R++QI S +LSNA Sbjct: 250 FNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVDTDMYTSGDWNRIIQIISNLLSNA 307 Query: 699 MDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757 F+ KG I R+ DF+ F VK++G IP ++F RF Q G GLG Sbjct: 308 TKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ--GTGLG 363 Query: 758 LSIVESFINLHGGHVSISSSD 778 L++ + GG + + S + Sbjct: 364 LTLCRMLVEKMGGRIWLRSQE 384 >gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 601 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 11/252 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L QT L VN R ++ + N L +A+ +K F+ ++S+ELR+PL +IIGF++ Sbjct: 315 LTETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSE 373 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+ + SL+ KQ +Y I S +LL ++NDILDLA V+AG M++ S L+ L+ Sbjct: 374 VLQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVG 431 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 I + + NI + V L D +L QI + +LSNA+ F+ +G + ++ Sbjct: 432 AQCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRV 491 Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRR---GVGLGLSIVESF 764 + D F SV + G + ++ +F +F + G R G GLGLSIV+ Sbjct: 492 VDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKEL 551 Query: 765 INLHGGHVSISS 776 L GG + S Sbjct: 552 AVLLGGEIDFQS 563 >gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 6/234 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +R+ ++I+ FV +VS+ELR+P+ I GF + L + + + + I + + Sbjct: 293 IRRLEQIRRDFVANVSHELRTPVAAIQGFAETLLEGVIREDPATAEHFAQVIHREAERMA 352 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+LDLA +++ L L D + + ++ +R++V S + Sbjct: 353 RLVQDLLDLARLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVW 412 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKS 737 ADR RL Q+++ +L NA ++ G TV + RD + V++ G IP D Sbjct: 413 ADRHRLDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPR 472 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V G GLGL+IV+ I HGG V S T I RIP Sbjct: 473 IFERFYRVDPGRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIP 526 >gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1138 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + +T+K + +A + K+ F+ ++S+ELR+PL +I+ LLK +K +LN+ Q +Y Sbjct: 465 KARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKY 524 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL+L+N++LDLA +++G + L I ++ L ++ E +I Sbjct: 525 ATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINF 584 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 K D + S F+ D RL Q+ +LSNA F+ G + L N + F V+++G Sbjct: 585 KTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFIVQDDGI 644 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + K +F F R+ G GLGLSI L GG +S+ S + +T Sbjct: 645 GIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTF 704 Query: 787 RIPSK 791 +P + Sbjct: 705 ILPYR 709 >gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM 17393] gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611 + L + NE +++++KN+F+ ++++E+R+PL I+GFT++L ++ +L+ ++ +++ Sbjct: 50 KTLQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVL--AETDNLSREERMIFLK 107 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + L+ ++ND+LD + ++A M+ + +N L+ E+ + + I+I+ Sbjct: 108 EINDNKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQIEF 167 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + DR R Q+ + ++ NA+ F+ +GS I N +F F V + G I Sbjct: 168 VEKLPQCRLMIDRVRFAQVINNLVKNALKFTEQGSVKIGYRRLSNNNFYFYVADTGCGID 227 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 E+ +++F RFV + RG GLGLSI +S + +GG + + S +T +P+ Sbjct: 228 EESRRAIFERFVKMNY--NIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284 >gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia thailandensis MSMB43] Length = 765 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V DILD +++ G ++L+ + L ++N+V ++ T + I + V Sbjct: 435 AIDRSARSLARMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQADGIELAV 494 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +RL Q+ S +LSNA F+ +G V + R +V + G I Sbjct: 495 ECALDTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERTGSQAKLTVADTGQGIS 554 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + VF F A RRG+GLGLSIV + LHGG V +S+ + Sbjct: 555 PEFLPHVFEAFRRAEGAPASSRRGLGLGLSIVRHIVELHGGKVGAASAGK 604 >gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis EO147] Length = 749 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%) Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592 LT + + R ER +L +A R+AD +K+ + VS+ELR+PL I G+ + Sbjct: 359 LTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIE 418 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+ G+L Q Q ++ I S+ L +V DILD +++ G ++L+ + L ++N Sbjct: 419 VLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +V ++ T + + V D L + + D +RL Q+ S +LSNA F+ +G V + Sbjct: 476 DVTGALGTAAQAEGLDLTV--DCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 R + V + G I + VF F + RRG+GLGLSIV LH Sbjct: 534 SLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELH 593 Query: 769 GGHVSISSSDEGV-TTINCRIPS 790 GG V ++S+ + + TT +P+ Sbjct: 594 GGKVEVASAGKRLGTTFTVTLPA 616 >gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 511 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480 Query: 784 INCRIPSK 791 + +P+K Sbjct: 481 VIAILPAK 488 >gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] Length = 738 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 12/246 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+T SV+ E L + A+ K++F+ ++S+E+R+P+ I+G TDLL ++ L Sbjct: 192 LNITASVQHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLLSETQ---L 248 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q YV+ I AS LL ++ND+LD + ++A + L+ L +NEV + Sbjct: 249 NDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEVVMLLQPSA 308 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDN 716 + + + V D L + FV D R+ QI + ++ NA+ F+ G +I +R++ Sbjct: 309 RDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLHGHVLIRVTGVPDESRND 368 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 D ++++ G IP D +F F + + Q G GLGLSI + I+L GG + + Sbjct: 369 CDIHIAIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLISLMGGTLWV 428 Query: 775 SSSDEG 780 SD G Sbjct: 429 -DSDPG 433 >gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 765 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 105/412 (25%), Positives = 190/412 (46%), Gaps = 32/412 (7%) Query: 385 SETHKDTWHL-PNGQTLHVIVTS--------NPR-----GGTIWMFENLTVQV-DLETKY 429 S T+ + WH NG T +++++ NP+ I +N+ ++ + E KY Sbjct: 339 SYTNIEIWHTHKNGTTFPMLMSAVVMKDEGRNPQYLSASAVDITHLKNIEDRIYESEKKY 398 Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 ++LV+ + I + +G+ + I++S + L EN + I R Sbjct: 399 SSLVENGNDGIIIIQDGLIKYANRKMIEMSEYSHEELI---ENPFIDFVSPKYIEIVKDR 455 Query: 490 YYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 Y +G D+ + I + DD + LS S++ Y + TM +++ Sbjct: 456 YQKRLNGEDIPSHYEIEIEANDDRTIPVD-----LSVSIINYQGL----LATMAILRDIS 506 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +A+ AL +A+ K F+ +VS+ELR+PL IIGF+D+L + G LN KQ Sbjct: 507 DWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNPIIGFSDILVSGVAGELNEKQ 566 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y I + + LL +VN I+D+ + + L + +++ E K + + + Sbjct: 567 KKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCFKVIEMIIETKDLLNSIALKKK 626 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I + + D +L VAD+ + +I ++ NA+ F+ G V + A + + SV + Sbjct: 627 ILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSGGHVSIHAIQKDDYVQISVTDT 686 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I +F F V ++ Q GVGLGL +V+ ++ L GG + + S Sbjct: 687 GIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVKEYVKLQGGDIWVDS 738 >gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 589 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 176/355 (49%), Gaps = 34/355 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N + G ++ + + Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 LF +++ ++ + ++ TL+ S +L + PL A++ +V +V R +TE+ Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + + + I S Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LVND+LDLA +++G L+Y I +N+ L ++ + + E NI + Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISLTEE 473 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F+ D ++ Q+F+ ++ NA+ +S G +V + +K++GS IPE+ + Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF A R G GLGL+IV++ + H G +++ S + TT IP+K Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588 >gi|271963794|ref|YP_003337990.1| histidine kinase [Streptosporangium roseum DSM 43021] gi|270506969|gb|ACZ85247.1| histidine kinase [Streptosporangium roseum DSM 43021] Length = 562 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 8/239 (3%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K+ LR+A + KN F VS+ELR+PL +IIG LL L +Q ++ I +S+ Sbjct: 201 KSAQLREASDAKNRFWATVSHELRTPLNSIIGLVRLLVGPGGDPLVEEQLHQIQLIGSSA 260 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 LL+LV+++LD+A +AG + S + L L ++ ++ + + + V +SDG Sbjct: 261 ETLLSLVSELLDMAKAEAGRLAPQPSVVDLVALAERMRMTLRPTSGTDQVTLSVKVSDGA 320 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDM 734 FV D L +I +LSN + F+ +G V L+ D G + +F+V + G +PE+ Sbjct: 321 AELFV-DEVMLTRILRNLLSNGLKFTEEGE-VRLEIDLDAGTHEMVFTVTDTGIGVPEEH 378 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + VF F V + + +G GLGL GG + +SSS EG + R+P + Sbjct: 379 LERVFEEFFQVPGPIQARTKGTGLGLPYARRLAQAMGGSLQLSSSPEGTMAV-LRLPHR 436 >gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] Length = 940 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 12/253 (4%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I+ + A +LT+ + S R ++ EK EA +A K+ F+ +S+E+R+P+ I G Sbjct: 532 IMLMAAAAFILTYRSKMRS-RIMQSELEKAEAKSRA---KSEFLSQMSHEIRTPMNAITG 587 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 TDLL+ + L + ++ I ASS +L+L+NDILD++ ++ G + + L + Sbjct: 588 LTDLLRMEE--KLPDGAREKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTE 645 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL+ + + + + E I + + + + D RL Q+ + +LSNA F+ G V Sbjct: 646 LLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVT 705 Query: 710 L---KAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763 L + RD G++ FSVK+NG I +D K +F F A + G GLGL I S Sbjct: 706 LTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSS 765 Query: 764 FINLHGGHVSISS 776 I GG++ + S Sbjct: 766 IIKAMGGNLMVES 778 >gi|81299291|ref|YP_399499.1| GAF sensor signal transduction histidine kinase [Synechococcus elongatus PCC 7942] gi|81168172|gb|ABB56512.1| GAF sensor signal transduction histidine kinase [Synechococcus elongatus PCC 7942] Length = 577 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 25/263 (9%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 RA + L E+ +AL +A ++K F+ + S+ELR+PLT +IG+ LL+ L Sbjct: 309 RANQTLLEQQQALIEAHRQSEALSQLKTDFLANTSHELRTPLTGMIGYLQLLQ-DDLAET 367 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +++ S+ LL ++NDILD+A ++AG ++L T+ L +LL EV+ + ++ Sbjct: 368 PEERQEFIAGAYHSALHLLGIINDILDIARIEAGRLQLQAETVPLRNLLAEVETCLRSQA 427 Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARD 715 + R ++ ++ + + DRQRLLQ+ ++ NA+ F+ G +T + + Sbjct: 428 QAKGLVYRCRIAAETESVALWGDRQRLLQVLFNLVGNAIKFTLTGYVEVRATAVWQPLCA 487 Query: 716 NGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767 NG + ++++G + + S+F F S A R G GLGL I + Sbjct: 488 NGQNLPGYLRLEIEDSGIGVAPERQGSLFQPF-SQADSSLTRQFGGSGLGLVICRRLLES 546 Query: 768 HGGHVSISSSDEGV-TTINCRIP 789 GG V + S EG+ TT+ C IP Sbjct: 547 MGGIVELFSPGEGLGTTVTCLIP 569 >gi|328474775|gb|EGF45580.1| hypothetical protein VP10329_18770 [Vibrio parahaemolyticus 10329] Length = 566 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++LG Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S +L ++ND+LD + ++AG+M++ +DL + A K E I + Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG + D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422 Query: 788 IPSKE 792 IP KE Sbjct: 423 IPLKE 427 >gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1044 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 12/251 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V+VT+ AE EA A+ K+ F+ ++S+E+R+PL I+G LL+T+ Sbjct: 645 THVDVTERKNAEYVALRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTT--- 701 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SLN +Q +Y S++ L +L++DILDL+ V+AG M + L L++ A+ Sbjct: 702 SLNHEQLEYSSMAVQSTSRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFAS 761 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 ++ + ++ D L V D RL Q+ + ++ NA F+ +G + L A + Sbjct: 762 IALQSGVELRHHFDDTLPQHVIGDPLRLQQVLTNLIGNAFKFTERGFVSVEAYPLPARNE 821 Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 N F V ++G IP++ +F F VS + Q +G GLGLSI + + L GG++ Sbjct: 822 NQLRIFFEVSDSGCGIPDEALGLLFEPFSQVSQGYTRQYQGAGLGLSICKRLVGLMGGNM 881 Query: 773 SISSSDEGVTT 783 +I SS+ GV T Sbjct: 882 AI-SSEVGVGT 891 >gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 19/242 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD +A K EA R A+ K+ F+ +S+E+R+P+ IIG T+L + + Sbjct: 552 DITDLAQA------KQEAER-ANRAKSEFLASMSHEIRTPMNGIIGLTEL---ALMQRPK 601 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +K Y+ + S+ LL ++NDILDL+ ++AG ++L S ++L + +++ + Sbjct: 602 AKVRDYLGMVKQSADSLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAE 661 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--- 719 I D ++ S D RL QIF ++SNA+ F+ GS + A D+ D Sbjct: 662 RKGITFSTKIDPRVPASLFGDEGRLRQIFVNLISNALKFTEAGSVSVQVTAEDHMDLAKP 721 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 I S+++ G IP + +S+F F + + G GLGL+I + I+L GG +++ Sbjct: 722 GPVEIIASIRDTGIGIPANRLESIFEPFDTGTRSTRHGGTGLGLTITKGLIDLMGGRITV 781 Query: 775 SS 776 S Sbjct: 782 KS 783 >gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] Length = 586 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ +KN FV VS+ELR+PLT+I G LL GSL + V S + L+ Sbjct: 353 KRAEVMKNEFVSTVSHELRTPLTSIAGSLGLLAGGATGSLPEGAQRLVTIASQNCRRLVR 412 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 L+NDILD+ + + + T+ L ++ + + E+ + + + + G L Sbjct: 413 LINDILDIEKMQSSGITFARDTVSLAEVAERSVEQNSGFALEHQVALTLEVEPGDL-RVT 471 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL+Q+ + +LSNA+ FS GSTV + AR +V+++G IPE ++F R Sbjct: 472 GDADRLIQVLTNLLSNAVKFSPAGSTVEVSVARRGDHVRATVRDHGMGIPESFRSAIFTR 531 Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSKE 792 F N+ QR G GLGL+I + H G +S ++EGV T + +P+ E Sbjct: 532 FAQADNSDTRQRGGTGLGLAIAREIADHHDGTLSF-ETEEGVGTAFHLDLPALE 584 >gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 508 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 ERA +EA +A+ K+ F+ ++S+ELR+PL I+GF++++K LG + N Sbjct: 229 ERAKAASDEARVRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDNENYR 288 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S + LL L+N+ILDL+ ++AG +L I + E + + H+ N+ Sbjct: 289 SYAADIHESGSHLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAHQKNL 348 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 R+ + +AD + L QI +LSNA+ F+ + ++A +G+ + SV++N Sbjct: 349 RVVTDFRPDMPRIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLSVRDN 408 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IPE+ V F S A + G GLGL IV LHGG + S Sbjct: 409 GPGIPEEEISQVLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRS 460 >gi|260902965|ref|ZP_05911360.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037] gi|308107447|gb|EFO44987.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037] Length = 566 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++LG Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S +L ++ND+LD + ++AG+M++ +DL + A K E I + Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG + D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422 Query: 788 IPSKE 792 IP KE Sbjct: 423 IPLKE 427 >gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429] gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429] Length = 465 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/360 (22%), Positives = 175/360 (48%), Gaps = 50/360 (13%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 E ++ ++EG+ V DG I+ +N + + + E+ + + + + + G Sbjct: 144 EVLNSINEGIFVLNKDGEIEFTNKFGKRILEKEDLE----DYFNFFISDENNIFTKEFGG 199 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 + F + T FD L + + ++ F NVT + E+ Sbjct: 200 NYFTIVKTKFD-----------------------FLGDEKYIIVFNNVTYEMELEK---- 232 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 L++ D+IK FV ++S+ELR+PL+ + +T+ L ++ Q +++ I S Sbjct: 233 ----LKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDP--ESQKEFLSIIYEQS 286 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676 L +L+ND+LD +D+G M+L YS + +++++V + + + + ++++ K D + Sbjct: 287 ERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKECEDVE 346 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIP 731 + AD++R+ Q+ ++ NA+ F+ + +++K D I V++NG IP Sbjct: 347 IS---ADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDI--LIIEVEDNGIGIP 401 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F +F + + + G G+GL+IV+ + LHGG++ + S ++ + IP Sbjct: 402 KSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNIP 461 >gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1009 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 10/223 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 + A+ K+ F+ ++S+E+R+PL +IG T LL ++L NS+Q +Y E + S LL+ Sbjct: 354 QAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETEL---NSQQRRYAETMLYSGESLLS 410 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+NDILDL+ ++A ++L L +++ ++A + HE + + + L V Sbjct: 411 LINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVK 470 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737 D RL Q+ + ++ N++ F+ KG I ++RD + F + + G IP++ + Sbjct: 471 GDCGRLRQVLANLVGNSIKFTEKGEVAIKVSSRDKDEENVLLSFEISDTGVGIPQEKLTT 530 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +F +F R+ G GLGL+I ++L GG +++SS + Sbjct: 531 IFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSSRE 573 >gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1295 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 15/242 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L EK AL + K+ F+ ++S+ELR+PL +I+ + +L T+K G+L +Q +Y Sbjct: 552 KARQELEEKARALEISGRYKSEFLANMSHELRTPLNSILILSQMLATNKQGNLLPRQLEY 611 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668 I+ S + LLNL+N++LDL+ ++AG M +N T+ L LL+ + E + Sbjct: 612 ATTINNSGSDLLNLINEVLDLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEKQLTL 671 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 + ++D + +D RL QI +LSNA+ F+++G I +N Sbjct: 672 VGELADDLPVTIYSDETRLGQILKNLLSNALKFTAEGEVKITIGRPENDKLPPGLKLNPA 731 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +F V++ G I D + VF F R+ G GLGLSI L GG ++ Sbjct: 732 RTLVFQVRDTGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELTA 791 Query: 775 SS 776 +S Sbjct: 792 AS 793 >gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 801 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 22/263 (8%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK- 595 + M ++T+ R E + R+ +E+K+ FV S+E R+PL I+ +LL+ Sbjct: 542 EVMAVIRDITERKRYEDDIRTALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLEH 601 Query: 596 -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 T KL LN Q Q VE+++ L+ND+L L ++G + + L Sbjct: 602 YGHKWDDTRKLKHLNQIQ-QSVEHMTG-------LLNDVLLLGKAESGNLAFKPIPMQLT 653 Query: 649 DLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 + + + I TK HE R++ + D + L IF+ +LSNA+ +S +G Sbjct: 654 EFCKGLAEELQITTKTHEIVCRLQ----DQPAETRMDEKLLRHIFTNLLSNAIKYSPQGG 709 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766 TV ++ IF+V+++G IP+ C VFN F ++ G G GLGL+IV+ ++ Sbjct: 710 TVDFDLVFEDNYAIFNVQDHGLGIPQSECDRVFNSFNRASNVGNISGTGLGLAIVKRSVD 769 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 LHGG +S++S ++ TT ++P Sbjct: 770 LHGGEISLTSQEKVGTTFTVQLP 792 >gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1637 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 165/722 (22%), Positives = 316/722 (43%), Gaps = 83/722 (11%) Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173 SFE+++ H I+ + E++R Q+ D E + + + + + + +LR ++G Sbjct: 796 SFESFI---HPIQDDQFLERVR---QARDERVELEWEVSCRDSSYLVRALPYLRNSEING 849 Query: 174 IYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKNTETEGIV 232 + + + ++ + FK + D ++D LV DQ G I +AN +K + G Sbjct: 850 VVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVL-LDQKGKISYAN---RKMCDQLGYS 904 Query: 233 FQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287 ++ +G+ FK E R+ + A N E S L+ + + + L Sbjct: 905 NEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQQRDGTEFPVEVALTPVF 962 Query: 288 EAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVEL 338 G + D+S T Q+ E + + I I D ++ + F N+ F ++ Sbjct: 963 LQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDCSLEDHPISFVNKGFTDM 1022 Query: 339 -----WEI---DLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETH 388 EI + FL +++E + +R A E + K +++N + ++ + Sbjct: 1023 TGFSEQEILGRNCRFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFW--NDLY 1080 Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448 H NG H + N ++T +++ + T + +D +EG+ Sbjct: 1081 ITPVHDENGILTHFVGVQN----------DVTERIEAARQTETNERTIRLLLDSTAEGL- 1129 Query: 449 VFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAI- 503 FG D G+ SN L E G + +A C N E D + A+ Sbjct: 1130 -FGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188 Query: 504 ----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERAL 555 I +D+ G +EY P+ ++TFV++ ++ E L Sbjct: 1189 AGEAINRYDERFCRKDG-----ESFPVEYWCHPIQEDGKIVGAVVTFVDIETRLQVENEL 1243 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEYIS 614 E A A+E K+ F+ ++S+ELR+PL+ I+GFT +L+ G++ +Y+ I Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQ----EYLSTIQ 1299 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVI 672 + LL L+ D+LDL+ ++A S++ L +LL ++ +++ T+ ++N + V Sbjct: 1300 RNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFDV- 1358 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSS 729 S+ + D RL QI +++NA+ F+ KG V++++ + D+ + V ++G Sbjct: 1359 SEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGIG 1418 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I ++ +++F FV R G GLGLSI + N GG + +SS++ + R Sbjct: 1419 IADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFTIR 1478 Query: 788 IP 789 +P Sbjct: 1479 LP 1480 >gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1307 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 31/277 (11%) Query: 536 AQTMLTFVNVTDSVRA----ERALTEKNEALRKADEI----------KNSFVQHVSYELR 581 A+ ++ ++VTD VRA E A E+ E LR+A++ K+ F+ + +ELR Sbjct: 890 ARILVVALDVTDYVRARKKLEAAAREREELLRRAEDARRDAERANRAKDEFLAMLGHELR 949 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIM 638 +PL I+ L++ G ++ + +++++A LV+D+LD++ + G + Sbjct: 950 NPLAPIVTALHLMRLRAGGHAERERLVIERQIKHLTA-------LVDDLLDVSRITRGKV 1002 Query: 639 KLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 +L I + D++ + + S + +++ + V S G + D RL Q+ S +L+ Sbjct: 1003 ELKKQRIEIADVVAKAVELASPLLEQRRHHLTVTVPSSGL--AVEGDVTRLAQVVSNLLT 1060 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 NA ++ G + ++A R G+ SV++NG I +M SVF RFV R G+ Sbjct: 1061 NAAKYTESGGEIAVRAGRVEGEVALSVRDNGIGIAPEMLPSVFERFVQERQALDRSQGGL 1120 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790 GLGL+IV + I +HGG VS S G + R+P+ Sbjct: 1121 GLGLAIVHNLIAMHGGRVSAHSEGRGRGSEFTIRLPA 1157 Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 8/227 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 D K F +VS+E R+PLT ++G D L + + + +++ ++ LL LV Sbjct: 369 DSAKTLFFSNVSHEFRTPLTLMLGPMEDALASPE----RALCGEHLSLAYRNALRLLKLV 424 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N +LD + ++ G + +Y L L ++ + + + + KV DR Sbjct: 425 NALLDFSRLEMGRAQASYDPTDLAGLTVDLASAFRSAIERAGLAFKVDCPELPEPVFVDR 484 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 +I +LSNA+ F+ G ++L AR++ V++ G+ IPE +F RF Sbjct: 485 DMWEKIVLNLLSNALKFTFDGEILLLLRARED-QVELVVRDTGTGIPEHELPHLFERFHR 543 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V A G G+GL++V + LHGG + S T IP Sbjct: 544 VQGARARTHEGSGIGLALVHELVRLHGGSIRAESRLGEGTAFTIAIP 590 >gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217] gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217] Length = 454 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++NE + A E+K+ F+ VS+ELR+PLT+I+G DL+ + LG + K + + Sbjct: 214 IKQENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEVPEKLKHVIGIAA 273 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L NL++D+LDL ++AG + ++ + N+L++E +S + I++ I Sbjct: 274 KNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKLGIQVTTIHC 333 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + F+ DR RL+Q+ + +LSNA+ FS + TV ++ SV + G IP+D Sbjct: 334 EEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEALGTRIRISVHDEGVGIPKDA 393 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF +F V ++ + G GLGL+I + + H G + S Sbjct: 394 KDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVS 437 >gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC 43183] Length = 852 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 6/238 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610 E + ++ AL +AD +K++F+ ++S+E+R+PL I+GF+DLLK L + +S++ Q+V Sbjct: 615 EELIAARDRAL-QADRLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLQAFSSEEVQQFV 671 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I+ + T+LL L+NDILDL+ +++G M +S+ L ++ EV S M + Sbjct: 672 ETININCTLLLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMPQGVELCT 731 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +G D RL Q+ + +++NA F+ +GS + ++G V++ G+ I Sbjct: 732 DFPEGADKYITTDAVRLKQVLNNLINNAKKFTVQGSITLGYRVDESGYTTVFVEDTGAGI 791 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++ K +F RF Q G GLGLSI ++ + G ++++S T R+ Sbjct: 792 SDEDQKHIFERFYKADSFTQ--GAGLGLSICQTIVERIHGTITVTSKPGRGTRFEVRM 847 >gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 1035 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765 NGD + V++ G + + + F NA G++ G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] Length = 770 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 183 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 184 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 240 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 241 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 296 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 297 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 352 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 353 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 394 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 395 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 451 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 452 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 511 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 512 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 571 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 572 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 603 >gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1170 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +FSV+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 854 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K+ V VS+ELR+PL++I GFT+L+ K+ SKQ +Y++ I + + L NLVN Sbjct: 614 DRLKSELVSTVSHELRTPLSSIYGFTELMLNRKMDL--SKQDKYLKTIHSETERLSNLVN 671 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D LD+ ++A I + L LL E Q A + I + ++D AD + Sbjct: 672 DFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDA-CPLIEADEE 730 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 ++ Q+ + +L+NA+ +S G + + D+ F+V++ G IP+ +F++F V Sbjct: 731 KMKQLMNNLLNNAVKYSPFGGNIEVVLEADHHHVQFAVRDEGIGIPKSALAKLFDKFYRV 790 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N+ + G GLGL+I + + H G +++ S ++ +T ++P Sbjct: 791 DNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLP 836 >gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] Length = 780 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 164/351 (46%), Gaps = 43/351 (12%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 G+T+D V P+G+ + R+ +KTEE R +A + + DG Sbjct: 377 GQTVD-------VLLPEGQAETHGRLARAFFKTEEPDAR-----RQMAGWRAVQGRKRDG 424 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RAL 555 LF ++T LS ++++ P L + V + +A+ RAL Sbjct: 425 -SLFPVLVT---------------LSATLIDGQ----PMVVAALKDMTVIEQQKADLRAL 464 Query: 556 T----EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 E+ +A + A+ KN F+ +S+ELR+PL IIGF++L+ T ++ K+ +Y Sbjct: 465 ADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYA 524 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 ++ + T LL L++D+LDLA ++A ++L + L ++ + + + + I ++ Sbjct: 525 ADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELE 584 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 V L ADR+ + QI + +L NA F+ KG V + D G F+V++ G Sbjct: 585 VAVAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGGRVTVTVGLDRAVPGQVRFTVEDTG 644 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +P D + F V + R G+GLGL+I + GG + I S Sbjct: 645 CGVPADKLPLLGQPFVQVGDKRRASAPGLGLGLAISRGLVERMGGMLRIES 695 >gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330] gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330] Length = 1035 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765 NGD + V++ G + + + F NA G++ G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|330465146|ref|YP_004402889.1| histidine kinase [Verrucosispora maris AB-18-032] gi|328808117|gb|AEB42289.1| histidine kinase [Verrucosispora maris AB-18-032] Length = 441 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 1/236 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR A E K+ F+ +VS+ELR+P+T IIG LL + L +Q + V I Sbjct: 204 LDEKSVQLRSASESKSRFLANVSHELRAPVTAIIGLARLLTDAASDPLTLEQERQVGLIR 263 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S++ LL+LVN++LDLA ++G ++ +++ + L L +++ ++ ++R+ V Sbjct: 264 SSASDLLSLVNELLDLAKAESGRLEPDWAEVDLRALFGQLRGTLRALHTVPDVRLVVEEP 323 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + D L Q+ +L N + F+++G V L+A R + V + G+ IP + Sbjct: 324 PSPATIRTDEMLLAQVLRNLLHNGLKFTTRGE-VRLRAERSGDSWKLVVTDTGAGIPAEF 382 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + VF F + G GLGL L GG + +SS ++ +P+ Sbjct: 383 HERVFEEFYQVPGPSRAGGTGLGLPYARRLATLLGGTLELSSEPGRGSSFTVSLPA 438 >gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1170 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +FSV+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1057 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 136/265 (51%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A+R L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 326 QTNVQLEERTQALEAQRQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+ Sbjct: 386 ILAKLLADNKDGTLSTEQVKYAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATT 445 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++++ + + +++ + + V D QRL QI +L+NA+ F+ G Sbjct: 446 SVLQRLRETFEPLARQKGLALEIAAVADTPTQLVVDNQRLQQILKNLLANAIKFTEHGKV 505 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A G F+V + G I + + +F F +RR G GLGLSI Sbjct: 506 SLSVQAHAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG +S+ S + +P+ Sbjct: 566 QRMGGSISVDSEPGRGSCFTLELPT 590 >gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 448 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 3/256 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +T + + RAE+AL + E A+ K+ F+ ++S+ELR+PL IIGF+ ++++ Sbjct: 186 RTRALMQEIQERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMES 245 Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G L + K Y + I S LL +++DILD+A ++AG ++++ + + D + Sbjct: 246 EIVGPLGHPKYLDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSL 305 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 IA + E + + + D R+ QI +L+NA+ F+ G +V L+ + Sbjct: 306 LLIAERAKEGGLTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRPE 365 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G + V ++G + + F + RR G GLGL +V SF+ L G + Sbjct: 366 GGRILIEVADSGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLD 425 Query: 774 ISSSDEGVTTINCRIP 789 I S + TTI+ R+P Sbjct: 426 IRSREGEGTTISVRLP 441 >gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 511 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480 Query: 784 INCRIPSK 791 + +P+K Sbjct: 481 VIAILPAK 488 >gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 1070 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 12/251 (4%) Query: 536 AQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +T+ T + ++T+ +AE AL E A+ K+ F+ +S+ELR+PL I+GFT + Sbjct: 568 GKTIFTAIIRDITERKQAEEALKRAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQV 627 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ SL + Q ++ I S LL L+NDIL++ ++AG LN + L LL+ Sbjct: 628 MQRDH--SLKEEHKQNLDIIGRSGEHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDN 685 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711 ++ + K E N+++ + L ++ D +L Q+ +L NA+ F+ +G ++ +K Sbjct: 686 LESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIK 745 Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFI 765 ++ + + F V++ G I + +F F + R G GLGL I F+ Sbjct: 746 TSQQSPNNQAIILTFEVEDTGPGIAIEEVDQLFEAFGQTETGRNSNEGTGLGLPISRKFV 805 Query: 766 NLHGGHVSISS 776 L GG +S+SS Sbjct: 806 ELMGGEISVSS 816 >gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus HD100] gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus HD100] Length = 477 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 134/237 (56%), Gaps = 11/237 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620 +++A++I+ FV + S+ELR+PLT+I G+ D LK K G + + ++++ +S + L Sbjct: 246 MKRAEQIRMDFVGNASHELRTPLTSIKGYVDTLKEDVKTGQIQ-QAGKFLDIVSRNIDRL 304 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 ++LVND+L + T++A +L I + V +A E NI I+V +G + F Sbjct: 305 MDLVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVMAAEKNITIRV--NGDVPPF 362 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVF 739 +AD +++ Q+ ++SNA+ + G T+ ++ RD ++ I V ++G IPE +F Sbjct: 363 LADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYIILRVIDDGQGIPEQHLDRLF 422 Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSKE 792 RF +G+ R G GLGL+IV+ + HGG V++ S D+G I C P ++ Sbjct: 423 ERFY-RIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIVDQGSEFI-CSFPIRK 477 >gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] Length = 657 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 140/264 (53%), Gaps = 9/264 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D ++ + L E AD++K+ F+ ++S+E+R+PL I+G Sbjct: 265 IAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVG 324 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ ++ ++ +Y+E I +S +LL L+NDILDL+ +++G ++++ + + Sbjct: 325 FSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAG 381 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ EV++ KM ++N+ +KVI DR R++Q+ LSNA+ + KGS + Sbjct: 382 LVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGSITL 440 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 + G ++ V + G I ++ +F RF Q G GLGLSI +S + Sbjct: 441 --GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERL 496 Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792 GG + ++S + +P +E Sbjct: 497 GGRIEVTSELGQGSVFALYLPYQE 520 >gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1170 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +FSV+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1350 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V++ + AL + +A +A K F+ +S+E+R+PL I+G+TDLL +L Sbjct: 834 DVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTDLLLED--ATLG 891 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + E I ++ LL +VNDILD + ++AG ++L+ +L+ L++ + + Sbjct: 892 EGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALVDNTISVVRGFVG 951 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I I + D + + V D+ RL Q+ +L+NA+ F+ GS + L+ A Sbjct: 952 KKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGSVTLSVSCLEPAGATAA 1011 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 FSV + G IPED +F RF ++ G+ G GLGL+I ++ + L GG + + S Sbjct: 1012 LRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKNLVELMGGTIDVES 1071 >gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 702 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T + L +K + A + ++ F+ ++S+E+R+P+ + G + L +S SL Sbjct: 284 VDITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGMLEALISS---SL 340 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 NS Q ++ S+ LLN+VNDILD + +D+G M S L D + E Sbjct: 341 NSTQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTIEEQVPMFTRLA 400 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 HE I + V + G G +F+AD+ R+ QI +L+NA+ F+ +G + + G F Sbjct: 401 HEKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKEGKVTVETKSTRYGKGRF 460 Query: 722 SVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 VK ++G I E K +F+ FV + QRR G GLGLSIV + +GG + + Sbjct: 461 RVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQIVKHYGGKIEV- 519 Query: 776 SSDEGV 781 SD GV Sbjct: 520 CSDLGV 525 >gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] Length = 770 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 183 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 184 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 240 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 241 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 296 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 297 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 352 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 353 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 394 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 395 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 451 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 452 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 511 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 512 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 571 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 572 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 603 >gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 620 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 182/368 (49%), Gaps = 33/368 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ID++++G+ V DG I NPA ++ E + G +++ + + +S + Sbjct: 259 IDNMADGLIVVDKDGVINHINPAASEMFGKAEFEMI-GKNVKILGKELDKLVKKSLNTEE 317 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 + + +ER + ++ S+ + A+ +L SV R +T++ Sbjct: 318 IVSNEINLVNERVG-----KAVAKSIKKEYFSEESEAKGIL------GSVILIRDITQEK 366 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612 E D +K F+ VS+ELR+PLT+I+GF +++ L N + S+ V Sbjct: 367 EV----DRLKTEFITVVSHELRTPLTSILGFIEIINKKFTENILPHLDMNNFRLSKAVNK 422 Query: 613 ISASSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 I+ + I+L+ L+ND+LD++ +++G N+ I + ++ + +++++ + Sbjct: 423 INKNFKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITDAYKALSSLFEQK 482 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I + L ADR+RL+Q+ +LSNA+ F+ KG V K A + + + SV++ Sbjct: 483 GIPCYIEIQPSLPFINADRERLIQVVINLLSNALKFTEKG-YVKCKTALNADEIVVSVED 541 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G IPE+ + +F +F V + RG+ +G GLGL+I + + HGG + + S +T Sbjct: 542 SGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGKIWVESELGKGST 601 Query: 784 INCRIPSK 791 IP K Sbjct: 602 FYFTIPLK 609 >gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 9/251 (3%) Query: 543 VNVTDSVRAERALTEKNEAL--RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V++ +RAE +N A A++ K+ F+ VS+ELR+PL I+GF+D+L G Sbjct: 218 VSIEQQLRAE----AQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFG 273 Query: 601 SL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 N +Q +YV + S LL++VN +LD++ ++AG +L ++ + + +A Sbjct: 274 KFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILDAFDISSSVRSCESMLA 333 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + LG VAD++ + QI ++ NA+ F+ G V + AA +G Sbjct: 334 LQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGIL 393 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +V + G IP D + FV + RR G GLGLS+V+ + LHGG+ +I+S Sbjct: 394 KLTVSDTGIGIPADKLAMLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGNFAIASR 453 Query: 778 DEGVTTINCRI 788 T I I Sbjct: 454 PGEGTIITVEI 464 >gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1170 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +FSV+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697] Length = 912 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 104/412 (25%), Positives = 195/412 (47%), Gaps = 52/412 (12%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VTS+ ++W F +++T ++ E + +V +TI++L G+ V K Sbjct: 358 VTSDEGEYSLWAFGKDITQRIKDEQQIKRFSQVMDKTIENLPAGIVV-------KDIKNN 410 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522 F+ L++ E ++ RNI E+ G D F FD +K + +E+ Sbjct: 411 FKYLYRNRE------SYNRNIPM------KEALGKDDFD--FYPFDIAQKKRKQDMEIAE 456 Query: 523 DSVLEYSI-------------------IPLPNAQTMLTFV--NVTDSVRAERALTEKNEA 561 + ++ I I + +L + ++T+ R ++ L E Sbjct: 457 TGIEKHWITEEYDQNGKSIILDKRKMRIESKDFSPILLSIEWDITEMERMKQELLVAKEK 516 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +D++K++F+ ++S+E+R+PL I+GF+ ++ S + ++ + + + A++ LL Sbjct: 517 AEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDAEERKSFYDIVEANNERLL 573 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+N+ILDL+ ++AGI++ + + L+ L E+ ++ + + I SD ++ + Sbjct: 574 QLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQGVKLIYEPSDEEI-TIE 632 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 D+ R+ Q+ S ++ NA F+++G + R GD I F V + G I VF Sbjct: 633 GDKNRIFQVISNLIGNAFKFTTQGK--VSYGYRRKGDGIEFHVSDTGIGIEAGKLDKVFE 690 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RFV Q G GLGLSI ++ I GG +S SS TT +P K+ Sbjct: 691 RFVKMNSFAQ--GTGLGLSICKTIIERLGGTISASSEMGKGTTFTFTLPEKQ 740 >gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 2783 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 171/358 (47%), Gaps = 21/358 (5%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 ++EGV V +I L NPA + + L G + ++A + + G ++ Sbjct: 2427 MTEGVIVLDTTNQITLFNPAAEQMLDIAAD-LVLGQPLAHLAEVGNDDISRRRGQTIYQG 2485 Query: 503 IITSFDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 I+ R++ QG D V+ +I P+ T V V R +T Sbjct: 2486 ILHGLRRMRET-QGIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVAVL------RDITR 2538 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EA D+ K F+ VS+ELR+PLT I G+ D+L + +L Q Y+ I ++ Sbjct: 2539 EIEA----DKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQLSYLNIIKNNT 2594 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L L+ DIL+ + D+ KL ++ + + ++ EV QS+ + +++++ + L Sbjct: 2595 NRLRALIEDILEFSRPDSK-KKLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSL 2653 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 +AD++R+ QI + SNA+ ++ +G ++ ++A + + + V++ G + + K Sbjct: 2654 PPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLK 2713 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F F N R G GLGLSI + + +HGG + ++S +T + IP ++ Sbjct: 2714 KLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQ 2771 >gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] Length = 1089 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 175/358 (48%), Gaps = 31/358 (8%) Query: 446 GVAVFGPDGRIKLSNPAFRSL--WKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAA 502 G+ + G I N F L W + E L S GT I N A+ +R +L + Sbjct: 457 GITITNAHGIISWINEGFVRLYGWNSSEEFLESKGTSIYN-ASGLTR-------AELSSF 508 Query: 503 IITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NVTDSVRA-ER 553 I + D++ + + + L + +Y S+ P+ + Q L F+ ++TD + A E Sbjct: 509 IEKAVDEKESIIFQSFKELKNQEQKYIQTSLTPVFDEQDELKFLVYVDTDITDLLEAREL 568 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ EK +A A + + F+ +VS+E+R+P+ IIG T L KL + Q + ++ + Sbjct: 569 AIREKRKA-ENALKTQELFLANVSHEIRTPMNGIIGLTRQLNDEKL---SHSQQEILDTL 624 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +S+ LL++VND+LD++ + AG M Y L DLLN SI+ + E +R + Sbjct: 625 DSSANGLLHVVNDLLDVSKIRAGKMTFEYVRFSLRDLLNTFATSISYRSEEKKLRFNLEF 684 Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--DFIFSVKNNGS 728 KL ++ + D RL QI I+ NA+ F+ +GS + + NG F +K+ G Sbjct: 685 TEKLPNYIIGDPIRLNQILLNIVGNAIKFTIEGSITLKVYSIEQKNGMERIHFEIKDTGI 744 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP VF F+ HR + G GLGL I +S + GG + + S + TT+ Sbjct: 745 GIPTHKQDFVFENFMQIEDHRTRTTSGTGLGLGIAKSLVEALGGEIHLFSQEGNGTTV 802 >gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01] gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01] Length = 1059 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ++ E A K+ A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L Q Sbjct: 375 TLAVEDAEKAKDHAI-QASKAKSSFLANMSHEIRTPLNGVIGISEILADT---PLTPTQR 430 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 YV+ I SS +LL+L+NDILD + +++G++ ++ + + + + ++ +A K E I Sbjct: 431 DYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKI 490 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 + V IS + D RL QI +SNA+ F+++G + L+ + DN F+ Sbjct: 491 SVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFA 550 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V++ G I + K +F F R+ G GLGL+I + L GG + + S Sbjct: 551 VRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 606 >gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 896 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 133/259 (51%), Gaps = 15/259 (5%) Query: 541 TFVNVTDSVRAER-ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 T ++ + AER L ++ +A R KA++ K+ FV VS++LRSPL I+G+ LL+ Sbjct: 642 TDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKLLR 701 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T +L + + I ++ L+ D+L+++ + G ++L + +L+N VK Sbjct: 702 TRQLPP--DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPV---NLVNIVK 756 Query: 656 QSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 S+ T H I + + D + V D RLLQ+ +LSNA+ F+ G V ++ Sbjct: 757 ASVETAYPSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQL 816 Query: 713 AR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 A+ D+ + + V + G I + VF+R+ + G+GLGL+I + LHGG Sbjct: 817 AKSDDSEILIQVSDTGLGIKPEFLPHVFDRYRQAHCTAKHSGLGLGLAIARHLVELHGGT 876 Query: 772 VSISSSDEGV-TTINCRIP 789 + S EG+ T + ++P Sbjct: 877 IQAHSQGEGLGATFSIKLP 895 >gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] Length = 951 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 6/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++V+ VR E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 440 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL S ++ V + SS +LL +++DILD + +++ +K+ +++N + + Sbjct: 497 SLPSDANRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLP 556 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D + + D RL Q+ S +LSNA+ F+ G V A D+G Sbjct: 557 LVVKKRLVLYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACCDDGYL 616 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 +F +++ G I +F+ F QR +G GLGL+I E ++L G ++I S Sbjct: 617 VFKMRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESE 676 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 677 PGLGSEFGIRIP 688 >gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei B7210] Length = 757 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 123/512 (24%), Positives = 217/512 (42%), Gaps = 81/512 (15%) Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367 YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 115 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGRGA 170 Query: 368 QLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMFEN 418 ++ + + S +S E H W P +GQ + + ++P G + + + Sbjct: 171 RVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRD 227 Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------- 471 ++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 228 ISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCD 283 Query: 472 -----------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDERK 512 N P + I N+ C R DG + A + S FD+ Sbjct: 284 VAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER-- 337 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIK 569 D+ + S+ + V S+R R +A R+AD +K Sbjct: 338 ----------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNRLK 381 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DILD Sbjct: 382 DELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILD 438 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRL 687 +++ G ++L+ + L ++N+V ++ + I + V + LG+ + D +RL Sbjct: 439 ASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGERL 496 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 497 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 556 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 557 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 588 >gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B] gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B] Length = 1060 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 139/247 (56%), Gaps = 13/247 (5%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + ML+ + +T + E A K++A+ KA + K+SF+ ++S+E+R+PL +IG +++L Sbjct: 374 ERMLSRLKLTQA--KEDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSD 430 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + SL + Q YV+ I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ Sbjct: 431 T---SLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 487 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I+ K E I ++V IS + D R+ Q+ +SNA+ F+ +GS + R+ Sbjct: 488 IISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITRE 547 Query: 716 --NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 NG+ + FSVK++G I K +F F + R+ G GLGL+I + L G Sbjct: 548 IKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMG 607 Query: 770 GHVSISS 776 G + + S Sbjct: 608 GEIQLES 614 >gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 1205 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++ +E A+ EA +A K+ F+ ++S+E+R+P+ I+G T L ++L Sbjct: 536 TLADIEARKASEAAILSAKEAAEEASRAKSDFLANMSHEIRTPMNGILGMTRLCLATEL- 594 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +Q +Y++ + +S+ +LL ++NDILD + ++AG ++L+ + L +L+ + Q +A Sbjct: 595 --SEEQREYLDMVDSSAQLLLTVINDILDFSKIEAGKLELSATDFSLRELVRDTLQPLAL 652 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 K E + I I S AD RL Q+ +L NA+ F+ G + + +G Sbjct: 653 KAGEKGLEILCDIPPSLADSRHADATRLRQVLGNLLGNAVKFTEVGEVELQVREQADGLL 712 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G I + VF F RR G GLGL+I + + GG + + S Sbjct: 713 RFSVRDTGIGISREGLAQVFESFSQADSSISRRYGGTGLGLTISSRLVGMMGGTLQVES 771 >gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 9] Length = 766 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 124 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 179 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 180 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 236 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 237 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 292 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 293 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 348 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 349 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 390 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 391 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 447 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 448 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 507 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 508 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 567 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 568 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 599 >gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 511 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ +G L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL+L+N+ILDL+ ++AG +L+ I L D+ + + + NI Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725 I + +L + AD + + Q+ +LSNA+ F+ +G + +K G +I S+K+ Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IPE+ V + F S A + +G GLGL IV++ + H G + S T Sbjct: 421 NGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480 Query: 784 INCRIPSK 791 + +P+K Sbjct: 481 VIAILPAK 488 >gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 905 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 17/230 (7%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K F+ VS+ELR+P+T+I GFT LL LG +N Q +++ I +++ ++ + Sbjct: 661 ESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPVNETQREFLNIIQSNAERMIAI 720 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+LD+ ++ G ++L I + + L++V + TK+HE + + L AD Sbjct: 721 INDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSLPAGLPLVRAD 780 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-----------ARDN---GDFI-FSVKNNGS 728 R QI ++SNA+ ++ +G ++ ++A RD G +I V++ G Sbjct: 781 AHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRYIQIDVRDTGV 840 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I D ++ RF N + + G GLGLS+V+ + L GG + + S Sbjct: 841 GIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVES 890 >gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] Length = 907 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 132/246 (53%), Gaps = 17/246 (6%) Query: 558 KNE---ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 KNE A +A+E+ K+ F+ ++S+E+R+PL IIGFT +L + KQ + Sbjct: 389 KNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKILLRD---NATKKQRHQLN 445 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS ILL +VNDILDL+ ++AG M L + + L +L+N V + ++ E + Sbjct: 446 AIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRIGEKEQTLNT 505 Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKN 725 D + + + D R+ QI ++ NA+ F++ G T+ +L + + SV + Sbjct: 506 RFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENKVNVEISVSD 565 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP D K++F+ F+ ++ R+ G GLGL+IV+ I+L G +S+ S + +T Sbjct: 566 TGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISVKSQESIGST 625 Query: 784 INCRIP 789 IP Sbjct: 626 FTLTIP 631 >gi|329911607|ref|ZP_08275576.1| two-component hybrid sensor and regulator [Oxalobacteraceae bacterium IMCC9480] gi|327545833|gb|EGF30951.1| two-component hybrid sensor and regulator [Oxalobacteraceae bacterium IMCC9480] Length = 654 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 18/247 (7%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +++T S + E A + EA R A E IK+ F+ +S+ELR+PL +I+G+T +L+ Sbjct: 242 LDITASKQIEEAHNDSAEASHMARAAAEHASLIKDEFLSTLSHELRTPLNSILGWTQVLQ 301 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +++ K + I S+ L++D+LD + + AG + LN + ND+++ Sbjct: 302 RGST-NMSDKAITALGTIERSARQQARLIDDLLDASAIMAGKIHLNLQPVRCNDVISASV 360 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A NI++ V D + AD+ RL QI ++LSNA+ FS STV ++ Sbjct: 361 ALSAPLAASRNIQLDVRIDEPGMAIEADQSRLQQILCRLLSNAIKFSPNDSTVTIRQMSS 420 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHG 769 N I ++ ++G I S+F RF ++ +H G+GLGLSIV+S I LHG Sbjct: 421 NHRVIITITDSGQGIAPAFLPSLFARFSQADGSITRSH----MGLGLGLSIVKSLIELHG 476 Query: 770 GHVSISS 776 G VS +S Sbjct: 477 GIVSATS 483 >gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01] gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01] Length = 1058 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 139/247 (56%), Gaps = 13/247 (5%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + ML+ + +T + E A K++A+ KA + K+SF+ ++S+E+R+PL +IG +++L Sbjct: 372 ERMLSRLKLTQA--KEDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSD 428 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + SL + Q YV+ I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ Sbjct: 429 T---SLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 485 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I+ K E I ++V IS + D R+ Q+ +SNA+ F+ +GS + R+ Sbjct: 486 IISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITRE 545 Query: 716 --NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 NG+ + FSVK++G I K +F F + R+ G GLGL+I + L G Sbjct: 546 IKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMG 605 Query: 770 GHVSISS 776 G + + S Sbjct: 606 GEIQLES 612 >gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] Length = 656 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 15/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T +RAE+ L + R+A E K +F+ ++S+E+R+P+ IIG +LL+ N Sbjct: 151 NITGQIRAEQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE---DPN 207 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ + SS +L+ +++DILD++ ++AG + L + +L++ S+ T++ Sbjct: 208 QTQKRYLATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCL-SVYTQIS 266 Query: 664 ENNIRIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 R ++ G++ + V D RL Q+ ++SNA F+ +G ++ + D Sbjct: 267 N---RKNILLTGRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKD 323 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + FSV+++G I E+ S+F RF V + G GLGL+IV + L GG V I Sbjct: 324 RLRFSVEDSGVGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIR 383 Query: 776 SSDEGVTTINCRIPSKE 792 S T IP ++ Sbjct: 384 SRSGHGATFFFDIPVQQ 400 >gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 466 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL++AD+ + +++ELR+PL+ I G + ++ + ++ +E + + Sbjct: 218 EALQQADQQRRQLTADIAHELRTPLSIIKGRLEGIQDG----VYEADAEQIEALLTEVAL 273 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+ND+ LA DAG + L + L+NE +S +E N+R+ D L Sbjct: 274 LERLINDLHLLALADAGQLPLYREVVSPQMLVNEAIRSFTPAANERNVRLSATIDDNLPD 333 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738 D QR+ Q+ ++ NA+ + G VI+ A RD F V++ G+ I P D+ + Sbjct: 334 IEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHRDESGIRFEVRDTGAGIDPADL-PYI 392 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF A R + R G GLGL+I + HGG + +S+ + TT++ R+P Sbjct: 393 FDRFY-KADRARSRSSGGAGLGLAIARRLVEAHGGQIWATSALQQGTTVSFRLP 445 >gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] Length = 669 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ L E EA KA++ K+ F+ ++S+ELR+PL I+GFT L+ S+ S++S+ QY+ Sbjct: 189 AEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYRQYL 246 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E ++ S LL L+NDIL+++ ++AG N S L LL+ + + + ++ + + Sbjct: 247 EIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLI 306 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725 L ++ D +L Q+ +L N + F+ G + + D+ ++ +++ Sbjct: 307 FDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDDQRLLWEIED 366 Query: 726 NGSSI-PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I PE++ K +F F + R ++G GLGL I + F+ L GG + +SS Sbjct: 367 TGLGIAPEEIYK-LFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSS 418 >gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction histidine kinase [uncultured prokaryote AT5] Length = 378 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 4/245 (1%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R R +N+ L A K+ F+ +S+ELR+PL IIG T+++ ++ K + Sbjct: 129 LREARRREAENQRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNAARFGTEKALE 188 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + ++A+ T LL+L+N++LDL+ ++AG ++LN + L +++EV + +N R Sbjct: 189 PLRRVNAAGTHLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNR 248 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKNN 726 + V + LG+F AD RL QI +LSNA F+ +G + ++ D D++ +V + Sbjct: 249 LIVEAQDNLGAFTADPLRLKQILLNLLSNACKFTKEGDVALRVRKVADGRDWVELAVADT 308 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G + + +F F RR G GLGL++ + GG V+++S + Sbjct: 309 GIGLTAEQQAKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVF 368 Query: 785 NCRIP 789 R+P Sbjct: 369 TVRLP 373 >gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 911 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 108/428 (25%), Positives = 184/428 (42%), Gaps = 54/428 (12%) Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453 LP G+ H + G I + E Q + N L ++ +SE ++ Sbjct: 437 LPGGEANHTRII----GVAIDVTERKGAQARVAAAENRLRAA----LESMSESFVLWDSR 488 Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513 R+ L N FR L+ + L PG + +R AI T Sbjct: 489 QRLVLWNRKFRDLFDFTDGMLKPGMSYDAVEQAAAR------------AIKTVHGGSEGK 536 Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-DEIKNS- 571 +EL + L YS P + + ++TD E ALTE LRK D++K S Sbjct: 537 AAYEIELSNGRWLHYSDRPTADGGLVSVGADITDLKHHEAALTENESQLRKTVDDVKRSQ 596 Query: 572 --------------------------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NS 604 F+ ++S+ELR+PL I GF++++ G L + Sbjct: 597 ARIADLAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDD 656 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + Y++ I +S LL L+NDILD++ ++AG M+L ++L+ + + + + E Sbjct: 657 RYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEE 716 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 ++++ +SD L D + Q+ ++SNA+ F+ +G V ++ F V Sbjct: 717 KQLKLRADVSD--LPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLGVAFQV 774 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I +D + F + + H +G GLGL++ +S I LHGG +SI S Sbjct: 775 SDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEG 834 Query: 782 TTINCRIP 789 TT++ +P Sbjct: 835 TTVSVVLP 842 >gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 882 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 14/253 (5%) Query: 551 AERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 A L +KNEAL A++ K+ F+ ++S+E+R+PL IIGF D+L +K+ + Sbjct: 270 ATSELKQKNEALTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKV---D 326 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q+QY+ ++ L+ L+N ILD + +++G M L I ++DLL E+ A Sbjct: 327 SQQNQYISTAQVAAKSLIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAF 386 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721 E + + L S + D QI +LSNA+ F+ G + + +N Sbjct: 387 EKGVELLFFPAQSLPSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAI 446 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779 SV ++G I +++ +FN F + R G GLGL+I S + LHGG +S + E Sbjct: 447 SVLDSGVGISQEVINDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPE 506 Query: 780 GVTTINCRIPSKE 792 G + I + + Sbjct: 507 GGARFDLTIQASQ 519 >gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 1138 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 882 DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 941 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L++ + LN+ ++E + Sbjct: 942 --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 999 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ G + VAD + + QI IL+NA+ F+ G +++ + + NG Sbjct: 1000 QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1059 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I +++ G + + F V+ R + G GLGL + ++ + +I+S+ Sbjct: 1060 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSA 1119 Query: 778 DEGVTTINCRIPSK 791 T + PS+ Sbjct: 1120 PNEGTLVEVSFPSQ 1133 >gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] Length = 769 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 125/514 (24%), Positives = 217/514 (42%), Gaps = 85/514 (16%) Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366 YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 188 Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 L E++ +S+ E H W P +GQ + + ++P G + + Sbjct: 189 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685 LD +++ G ++L+ + L ++N+V ++ + I + V + LG+ + D + Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] Length = 939 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L D L EV AT HE + + + D K+ S Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIPSGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ +V LK+ + D + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELKSQKEDRVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTS 502 >gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 652 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 11/252 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L QT L VN R ++ + N L +A+ +K F+ ++S+ELR+PL +IIGF++ Sbjct: 366 LTETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSE 424 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+ + SL+ KQ +Y I S +LL ++NDILDLA V+AG M++ S L+ L+ Sbjct: 425 VLQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVG 482 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 I + + NI + V L D +L QI + +LSNA+ F+ +G + ++ Sbjct: 483 AQCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRV 542 Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRR---GVGLGLSIVESF 764 + D F SV + G + ++ +F +F + G R G GLGLSIV+ Sbjct: 543 VDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKEL 602 Query: 765 INLHGGHVSISS 776 L GG + S Sbjct: 603 AVLLGGEIDFQS 614 >gi|311234406|gb|ADP87260.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 742 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A+ K++F+ ++S+E+R+PL ++G DLL+ + L++ Q++Y+ Sbjct: 348 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 404 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L +L+ DILDL+ ++AG + L L+D+L ++++ A E + ++ D Sbjct: 405 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 464 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729 G F+ D R+ QI ++ NAM F+++G +L +F V ++G Sbjct: 465 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQMKLEVKTLLPMPDGRARILFMVHDSGCG 524 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ S+ F V + +GVGLGL+I + ++ + G +++ S Sbjct: 525 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 573 >gi|311893956|dbj|BAJ26364.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 603 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR A E K+ F +VS+ELR+P+ ++G +LL+T + Q + I+ Sbjct: 221 LDEKSRQLRDASEAKSRFWANVSHELRTPVNAVVGLAELLRTDADAPAEERARQ-LSLIA 279 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVIS 673 S LL LV+++LD+A ++G ++ ++ + L +L+ ++ ++ +RI Sbjct: 280 DSGRTLLALVDELLDVAKAESGTLEPQWAPLDLRAVLSHLEGTLRGLARPGVALRIGPAP 339 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSS 729 DG + + D L+++ +LSNA+ F+ GS +++ D D + +V + G Sbjct: 340 DGTE-ALLGDETMLVRVLRNLLSNALKFTEHGSVRLDAVVEPHPDGAPDLVLTVSDTGVG 398 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP D + VF F V H+ RRG GLGL + GG + + S T+I R Sbjct: 399 IPADQHERVFEEFYQVRGPHQRGRRGTGLGLPYARRLTEILGGTLHLDSVPGRGTSITVR 458 Query: 788 IP 789 +P Sbjct: 459 LP 460 >gi|86143379|ref|ZP_01061781.1| histidine kinase response regulator hybrid protein [Leeuwenhoekiella blandensis MED217] gi|85830284|gb|EAQ48744.1| histidine kinase response regulator hybrid protein [Leeuwenhoekiella blandensis MED217] Length = 685 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 144/277 (51%), Gaps = 27/277 (9%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVN------VTDSVRAERALTEKNEALR-------KADE 567 L+D L +I L A +L+F N + ++R + L E N +L +A Sbjct: 257 LADYALGVGLI-LSLAIGLLSFFNRNAQNAASRTLRMNKKLKELNLSLEEQTLKANQASI 315 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTILLNLVN 625 K F+ ++S+E+R+PL I+G +DL+ GS N+K + Y+ + SS LLNL+N Sbjct: 316 AKTEFLSNMSHEIRTPLNAIVGISDLI-----GSGNNKFEEEHYLSLLKQSSKTLLNLIN 370 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 DIL L +++G ++ + +++ ++Q + ++ ++V+ D K S+V DR Sbjct: 371 DILRLDKMESGFSEVAHIEFCPLNIIENLRQFNLQPVKSKDLDLEVVVDTKTKSYVLGDR 430 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNR 741 + QI + I+SNA+ F+ KG I + R + + V + G IPED +F+R Sbjct: 431 AKFEQILNNIVSNAIKFTQKGKIAIHYSERQENNKVAVEIRVTDTGIGIPEDKINDIFDR 490 Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+ R + G G+GLSIV+ + L GG +S+ S Sbjct: 491 FIQLDTGMRKKHSGGGIGLSIVKHLVELLGGTISVKS 527 >gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 588 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + A+ +K+ F+ VS+ELR+PL I+G +D+LK +K S + I ++ I Sbjct: 193 EQAQTANRLKDEFLATVSHELRTPLNVILGHSDILKDPATSPEEAKVS--INAIHRNAQI 250 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + ++ND+LD++ + +G ++L+ I + ++ +S+ NI+++V +L S Sbjct: 251 QVQIINDLLDVSRIISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKS 310 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D +RL Q+ +LSNA+ F+ KG + +K + V +NG I + VF Sbjct: 311 VGGDPERLQQVLWNLLSNAIKFTPKGGNITVKLSNVESRVQIDVIDNGKGIDPEFLPYVF 370 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 RF RR G+GLGL+IV + HGG V+ +S+ Sbjct: 371 ERFRQEDATTTRRYGGLGLGLAIVRHIVEGHGGTVAATSA 410 >gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 693 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 131/251 (52%), Gaps = 4/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 +VT+ RA + + A+ K F+ ++S+ELR+PL IIGF++++ LG + Sbjct: 412 DVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIG 471 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N ++Y I S +LL+++N+ILDL+ ++ G +L T+ + ++ + I + Sbjct: 472 NPAYAEYASDIHDSGRVLLDVINEILDLSAIETGRRELKERTVDIGRVVRGSLRLIRERA 531 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721 + + ++ D L AD L QI S +LSNA+ F+ G + A ++G + Sbjct: 532 LQGGVTLETALDETLPLVRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLL 591 Query: 722 SVKNNGSSI-PEDMCKSVFN-RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V++ G + PED+ ++ R V G GLGL +V++ ++LHGG + S+ + Sbjct: 592 TVRDTGIGMRPEDLAHAMEPFRQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELESTPD 651 Query: 780 GVTTINCRIPS 790 T + +P+ Sbjct: 652 AGTLASVWLPA 662 >gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 511 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 25/235 (10%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 ++N F+ VS+ELR+PLT+ +G DLL + +LG+LN + + + + ++ L+ LVNDI Sbjct: 272 LENEFISLVSHELRTPLTSTMGALDLLGSEQLGTLNEQGQKVLSIATTNTERLIRLVNDI 331 Query: 628 LDLATVDAGIM---KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 LDL + +G + K+ Y+ L E Q++A + +++K+I + AD Sbjct: 332 LDLERMKSGKIFTRKMKYNAADLLTTATEAMQAMA-----DQLQVKLIINPVEVELWADP 386 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGD-----FIFSVKNNGSSI 730 RLLQ + +LSNA+ FS G TV + A ++N + ++K+ G I Sbjct: 387 DRLLQTLTNLLSNAIKFSEPGDTVYISATLSESQGVEPKENEPLLPKYLLITIKDQGRGI 446 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 PED + +F RF V + + G GLGL+I I H G + + S+ EG T Sbjct: 447 PEDKLQIIFERFQQVDASDSRNKGGTGLGLAICRDIIQQHDGKIWVQSTLGEGST 501 >gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] Length = 769 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 510 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] Length = 529 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 36/331 (10%) Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 PD ++ AF L K E I+ A R + + W +D+ Sbjct: 208 PDDHQRVLTEAFEKLIKGE---------IKGYTAQYRRLFRDEYIWVKAFVQPYKYDENG 258 Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADE--- 567 K L+ L L+D E +N+ + +RA E+ +KN L KA E Sbjct: 259 KPLK-ILYYLTDITNE---------------INIREKLRAAEKERHQKNIELAKAQESNK 302 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ ++S+E+R+PL I+GF+ +L + ++ + YV+ I+ +S +LL L+NDI Sbjct: 303 LKSMFLANMSHEIRTPLNAIVGFSSILADMQEEDMDERHF-YVDIINKNSDLLLQLINDI 361 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++AG ++ ++ E+ A K+ +++ D +D +RL Sbjct: 362 LDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKI-PDHVCFSFNRDLPSVELNSDPKRL 420 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746 Q+ S L+NA+ F+S G + L + SV + G I E+ C ++F+RFV N Sbjct: 421 TQVISNFLTNAIKFTSDGE-IKLDYLLEKDKIYVSVTDTGIGISEEACNNIFDRFVKLNT 479 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 H ++G GLGLSI +S I GG + + S+ Sbjct: 480 H---KQGTGLGLSISKSIIEKLGGKIGVYST 507 >gi|10957449|ref|NP_051569.1| sensor histidine kinase/response regulator [Deinococcus radiodurans R1] gi|6460878|gb|AAF12582.1|AE001826_51 sensor histidine kinase/response regulator [Deinococcus radiodurans R1] Length = 577 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK E LR+A+ +K +F+ ++S+ELR+PL +++G +L G LN +Q + V+ + Sbjct: 201 LEEKAERLREANGLKTTFLSYMSHELRTPLHSMLGLARILSGQLDGPLNPEQLKQVQLLQ 260 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL +VN +LDLA ++AG ++ +T + +L ++ + +N + +I + Sbjct: 261 GAAGDLLEMVNGLLDLAKMEAGKTDVDVTTFEVRELFGTLRALFLPLL--DNPAVNLIFE 318 Query: 675 GKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731 G D++++ Q+ ++NA+ F++ G + +GD + F+V++ G + Sbjct: 319 DAAGFPPLTTDQRKVEQVLRNFIANALKFTAAGEVRVTAQLLPSGDRVRFTVQDTGIGLS 378 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +F F G+ G GLGLSI F L GG V + S+ + +P Sbjct: 379 DEEQAQLFQDFSQVGRPGRPAGTGLGLSIARKFTELLGGRVGVQSAPGAGAEFSAELP 436 >gi|239625415|ref|ZP_04668446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519645|gb|EEQ59511.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 542 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 135/239 (56%), Gaps = 6/239 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-EYISA 615 E+ A+ KA++++++ ++ +S++LR+PLT+I G +L G+L+ + I Sbjct: 302 EEETAMAKAEQLRSNLLRSMSHDLRTPLTSISGNAGVL-LKDAGTLDEAHKHRIYSDIYD 360 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S L++LV ++L + ++ G ++L+ T +L ++++E + + + HEN+ I V +G Sbjct: 361 DSMWLISLVENLLSITRMEGGAVQLHMETELLEEVIDEAMRHV-NRRHENH-SIHVTQEG 418 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 D Q ++Q+ + ++ NA+ ++ GS++ +K+ +DNG+ + V +NG IP++ Sbjct: 419 DYILACVDAQLIIQVITNLVDNAIKYTPDGSSITIKSYKDNGNAVIEVSDNGPGIPDESK 478 Query: 736 KSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F F + H+ +RG+GLGL + + +N H G + + + + +P++E Sbjct: 479 DRIFQMFYTTGHKSADGKRGMGLGLPLCRAILNAHKGTIEVLDNTPSGSIFRLTLPAEE 537 >gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] Length = 1202 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 7/246 (2%) Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER + +K E L + + K+ F+ ++S+ELR+PL +I+ + L+ + +LN Q + Sbjct: 506 AERNNEIQKKVEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMTENPDENLNEDQVE 565 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 I +S + LL L+++ILDLA +++G M L Y +++ +++ ++K E + Sbjct: 566 SARVIHSSGSSLLTLIDEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNPVFQEKALP 625 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKN 725 ++ D + + +DR R+ Q+ +LSNA+ F++KGS + ++ + DFI FSVK+ Sbjct: 626 FNIVIDEDVQKVIESDRLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPDFIIFSVKD 685 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I ED K +F F +R+ G GLGLSI L GG + + S + + Sbjct: 686 TGVGIAEDKQKIIFEAFQQADGSTKRKFGGTGLGLSISREIARLLGGELVLKSEVDKGSE 745 Query: 784 INCRIP 789 + IP Sbjct: 746 FSFIIP 751 >gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1965 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 142/284 (50%), Gaps = 14/284 (4%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEI 568 L GTL S + +++ P +L ++ ++ ERA L ++ E L +A+ + Sbjct: 1536 LLGTLSFASLTRTQFT----PAEVNLLQAISEQVAIALERAELVASLEQQTEDLARANRV 1591 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+ELRSPL I+G+T LL++ K ++ + I ++ + L+ D+L Sbjct: 1592 KDEFLAVLSHELRSPLNPILGWTKLLQSQSFSP--DKAAKALATIERNAKLQAQLIEDLL 1649 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ + G M LN +++ L ++ +++ I+++ + + ++ + D RL Sbjct: 1650 DVSRILQGKMVLNVTSVNLGSVIEAALETVRLAAEAKAIQLETLMEPEIDPILGDPARLQ 1709 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QI +L+NA+ F+ +G V ++ R + V++ G I VF+ F Sbjct: 1710 QIVWNLLTNAVKFTPQGGQVTVRLQRVDTFAQLQVQDTGKGISPAFLPHVFDYFRQEDGT 1769 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV HGG V+ S EG+ T R+P Sbjct: 1770 TTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIRLP 1813 >gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 18/249 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T R E L +A +A+ K+ F+ ++S+E+R+P+ I+G +L + +G + Sbjct: 538 EITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVEL---ALMGCKD 594 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y+ Y S+ LL++VNDILDL+ ++AG M+L S ++L + ++ Sbjct: 595 ARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESLFAIQGSQAE 654 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDN 716 + +R K D + V D RL QI + ++ NA+ ++ +G +LK ++ Sbjct: 655 QKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTAEVLKQDQEQ 714 Query: 717 GD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 G+ +FS+++ G I D +F F A + G GLGL+I + + L Sbjct: 715 GEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTRGAQDAEFGGTGLGLTITKQLVELM 774 Query: 769 GGHVSISSS 777 G + + S+ Sbjct: 775 NGRIDVRST 783 >gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 575 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 13/256 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T V+A L K+E +A +K+ F+ VS+E+R+PL ++G +L GSL Sbjct: 181 TQMVQAAIELQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDD---GSLRPD 237 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QS V+ I+ S +LL+ +ND+LDL+ ++ G+M + L ++N V Q E Sbjct: 238 QSDQVQAITRSGEVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAEK 297 Query: 666 NIR--IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF 721 ++ I++ D L V D R+ QI +LSNA+ F+++G +++ D F Sbjct: 298 SVEFFIEISPDLDLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIRF 357 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V++ G + E + VF RF R+ G GLGL I L GG + + S+ Sbjct: 358 TVRDTGIGMSEAEVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDV-QSEP 416 Query: 780 GVT---TINCRIPSKE 792 GV T + ++P+ + Sbjct: 417 GVGSCFTASLKLPAHD 432 >gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 1155 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+ +Q ++ Sbjct: 468 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVKF 527 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ T + L+ ++ + Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 587 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V + ++ + DRQRL QI +LSNA+ F+ +G + + + + +F+V++ G Sbjct: 588 EVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQADSGIVFAVRDTGI 647 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +++F F RR G GLGLSI +L GG +++ SS + + Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSL 707 Query: 787 RIPSK 791 +P + Sbjct: 708 ILPER 712 >gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] Length = 757 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364 H YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 113 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 172 Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414 L E++ +S+ E H W P +GQ + + ++P G + Sbjct: 173 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 223 Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471 + +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 224 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 279 Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508 N P + I N+ C R DG + A + S FD Sbjct: 280 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 335 Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566 + D+ + S+ + V S+R R +A R+AD Sbjct: 336 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 377 Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V Sbjct: 378 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 434 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILD +++ G ++L+ + L ++N+V ++ + I + V D + Sbjct: 435 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 494 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 495 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 554 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 555 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 588 >gi|218130913|ref|ZP_03459717.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697] gi|217987257|gb|EEC53588.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 10/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F++++ S + AL NE ++ +++N+F+ ++++E+R+PL I+GFT +L ++ Sbjct: 37 IMIFISISKSKHVQ-ALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTIL--AE 93 Query: 599 LGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L+ +Q +++ I+ + +LL LVND+LD + ++A M+ N + +N L+ E Sbjct: 94 TDNLDKEQRVAFLKEINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILET--C 151 Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 IA H I+ + + DR R Q+ ++ NA+ F+ +G + Sbjct: 152 IAENAHSRLPGIQAEFVEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLS 211 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 N +F F V + G I E+ +++F RFV + RG GLGLSI +S I +GG + + Sbjct: 212 NQNFYFYVADTGCGIEEESRRAIFERFVKMNY--NIRGTGLGLSICKSIIEHYGGGIGVE 269 Query: 776 SSDEGVTTINCRIPSK 791 S +T +P+K Sbjct: 270 SKKGEGSTFYFTLPAK 285 >gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] Length = 574 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 42/335 (12%) Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 W+T P + +A +R N +DL A + T +DE L +L L + V Sbjct: 265 WRTSRAIAEPVIIVTQVAEQVARKSN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 318 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E + + L + E A + K+ F+ +VS+ELR+PL Sbjct: 319 ERT-----------------------KELEQAKELAEAASKAKSVFLANVSHELRTPLNA 355 Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG + LL+ L +E I+++ LL L+NDILDL+ ++AG M L T Sbjct: 356 VIGLSQLLQDDATDLDLTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETF 415 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + L+N V ++ + + +NN ++V D +LG+ AD+ R+ Q+ +LSN+ F++ G Sbjct: 416 EIAKLINNVVLTVKSAIDKNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFTTNG 475 Query: 706 STVILKAARDNGDF---------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 V L R+ D FSV + G + E + +F F +R G Sbjct: 476 K-VTLTVKREKTDLPPEAAFDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGT 534 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I F + GG V + S +T +P Sbjct: 535 GLGLAISRHFCQMMGGEVFVKSQPGVGSTFTVHLP 569 >gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 995 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 11/255 (4%) Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 +I L +LT V++TD V AE AL E +A A K+ F+ ++S+E+R+P+ ++ Sbjct: 579 LIRLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVL 638 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G +LL + L ++Q QY+ I +S LL L+NDILDL+ ++AG ++L Y+ L Sbjct: 639 GMAELLAFT---DLTAEQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLR 695 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 +N+V + + +H ++ L V D+ R QI +LSNA+ F+ GS Sbjct: 696 KAINDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGSV 755 Query: 708 VI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 I L F+ +V + G I + +++F F RR G GLGL+I Sbjct: 756 SISAELIECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAIS 815 Query: 762 ESFINLHGGHVSISS 776 L GG + + S Sbjct: 816 RQLAELMGGDIGLES 830 >gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] Length = 853 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 12/287 (4%) Query: 501 AAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A I DDE L +L +L++ + SII L ++ T + + E+ L Sbjct: 212 ARAIKRSDDEIGQLADSLNAMLTELSKQESIISLNHSLT----AEIAVRKQTEQELINMR 267 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 ++ +A+ K+ F+ ++S+E+R+P+ IIGF D++ G L+ KQS+++ + S+ Sbjct: 268 DSAEQANRSKSDFLANMSHEIRTPMNAIIGFVDIVLE---GDLDQKQSKHLMTVRNSAKD 324 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLG 678 L NL+NDILD+A ++AG ++L + + LL +V ++ K + + I+ I++ Sbjct: 325 LHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDLPA 384 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F+ D RL Q+ ++ NA+ F++ GS I + F +++ G I +D + + Sbjct: 385 QFLGDALRLKQVLMNLIGNAIKFTASGSITIAVEQINQEQLQFIIRDTGIGIAKDKLEHI 444 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F F R+ G GLG +I + + L GG + + SDEGV T Sbjct: 445 FESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWL-ESDEGVGT 490 >gi|86157906|ref|YP_464691.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774417|gb|ABC81254.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 418 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +V ER TE+ L + D +K++F+ ++++EL +PLT + G+ +L++ KLG L +Q Sbjct: 147 AVAGERRATER---LLEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 203 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + VE + S L +V+++ D A++ AG + + +V + L +EV + + + Sbjct: 204 RIVESMLGSVARLSRIVDNLSDFASLQAGRAPIVEAPVVPDQLADEVVAEHRPAIRDARL 263 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + V G G+ +AD ++L Q S ++SNA+ FS G+ V+++ R+ G F+V + G Sbjct: 264 HVAVSHAGG-GAVLADARKLRQALSNLVSNAVKFSPHGAEVLVEVGREPGRLRFTVYDQG 322 Query: 728 SSIPEDMCKSVFNRFVSNAHR----GQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + VF A R + G GLGL + HGG V + S Sbjct: 323 PGIGAAELERVFEPLHHAAARAGEDARLPGSGLGLPVARRIAEAHGGRVWVESP 376 >gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 1313 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 540 LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++FV ++++ RAE+AL E E A++ K++F+ +S+ELR+PL I+G+T + K Sbjct: 808 ISFVQDISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIFNHDK 867 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 SL KQ + ++ I S LL L+NDILDL+ +++G ++L + ++ L ++ Sbjct: 868 --SLTEKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLF 925 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--------STVI 709 + + N+ +L + V AD +RL Q+ +LSNA+ F+ +G +V Sbjct: 926 RMRAEQKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQEGQVSFKVIYQSVP 985 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINL 767 + +N + I F V++ G I D + +F F + ++ G GLGL I + + + Sbjct: 986 APSTEENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGDQSEQVEGTGLGLPISKKLVEM 1045 Query: 768 HGGHVSISS 776 G + + S Sbjct: 1046 MAGQLQMQS 1054 >gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 867 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613 + ++ AL +AD++K++F+ ++S+E+R+PL I+GF+DLLK L + +S++ Q+VE I Sbjct: 633 IAARDRAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLEAFSSEEVQQFVETI 689 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + T+LL L+NDILDL+ +++G M S+ L ++ +V S M + Sbjct: 690 NINCTLLLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDSQRLSMPQGVELRTDFP 749 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G V D RL Q+ + +++NA F++KGS + + + G V++ G+ I ++ Sbjct: 750 EGTGKDIVTDSVRLKQVVNNLINNARKFTAKGSITLGYSMEEPGYTTVFVEDTGAGISDE 809 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K +F RF Q G GLGLSI ++ + G ++++S Sbjct: 810 DQKHIFERFYKADSFTQ--GAGLGLSICQTIVERLHGTITVTS 850 >gi|302528985|ref|ZP_07281327.1| two-component system sensor kinase [Streptomyces sp. AA4] gi|302437880|gb|EFL09696.1| two-component system sensor kinase [Streptomyces sp. AA4] Length = 1586 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 19/257 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L A + KN F+ ++S+ELR+PL + + LL + G+L KQ Q+ Sbjct: 1151 QARQELEERAGQLTVASQYKNEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQF 1210 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I A+ + L L+NDILDLA V+AG + L S + L +L+N V+ + + Sbjct: 1211 AKTIYAAGSDLQQLINDILDLAKVEAGKLDLQMSDVTLPELVNYVESLCRPLTADKGLEF 1270 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------------LKAAR 714 V+ D + GS D RL Q+ +LSNA F+ +G + L++A Sbjct: 1271 AVLIDPPVPGSVHTDEHRLQQVLRNLLSNAAKFTDEGGVRLHIRMADPEEVEQESLRSA- 1329 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 G F+V++ G IPE+ + +F+ F R+ G GLGLSI + L G + Sbjct: 1330 -AGIIAFAVEDTGIGIPEEKLEVIFDAFRQADGTTSRKYGGTGLGLSISQQLTELLSGEL 1388 Query: 773 SISSSDEGVTTINCRIP 789 +SS +T +P Sbjct: 1389 RVSSVPGKGSTFTLYLP 1405 >gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR [Thermodesulfovibrio yellowstonii DSM 11347] Length = 392 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 182/359 (50%), Gaps = 38/359 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEE---NRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++EG+ + P G I L+N +F+ + K +E RL IRNI D +L Sbjct: 57 ITEGLLIIDPKGYIMLANQSFKDILKIDEPPEGRLVIEV-IRNI-----------DLINL 104 Query: 500 FAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 ++ I+ +D E +L+ + D L +P+ +++ ++F+ + L Sbjct: 105 ISSSISKKEDLAEEITLKKAGK---DIYLLAKAMPVVDSEGTISFLII---------LLH 152 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISA 615 L++ + ++ FV +VS+EL++P+T I G+ + L G++N K++ +++E I Sbjct: 153 DITRLKQLENVRRDFVANVSHELKTPVTAIKGYAETLLD---GAINDKENSKKFIEIIKN 209 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L LV D+L L+ ++ G +K+ IVL++L++ V Q + K + + ++ Sbjct: 210 QADRLNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKEIPP 269 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + + AD+ R+ QI ++ NA+ F+ KG V ++ ++N + SV++ G IP++ Sbjct: 270 ETAIY-ADQYRMSQIMINLVDNAIKFTEKG-FVKVRFFKENSKGVISVEDTGIGIPKEHI 327 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + RF V A Q G GLGL+IV+ + HG + I S E T + IP KE Sbjct: 328 HRIGERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIPEKE 386 >gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 788 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 9/238 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVT + +AE L E E A K F+ VS+E+R+PL I+G T LL ++ Sbjct: 245 NVTATRKAEAELVEALERAEAASHAKTRFLATVSHEIRTPLNGILGMTHLLSQTET---T 301 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+ S LL+L+ D+LD+ +++AG + L L++L++ V + +A+K H Sbjct: 302 PEQASYIRNARESGQSLLSLIEDLLDVTSIEAGRLNLREEEGDLSELVHGVCELMASKAH 361 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E NI I V I+ +D R+ QI ++ NA+ F+ G V+++ + +N +FS Sbjct: 362 EKNIEIAVHIAVDAPQRIASDIGRVRQILFNLVGNAIKFTESGG-VLVEVSLENAALVFS 420 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777 V + G + E +F F A G R G GLGLSI + GG + + S+ Sbjct: 421 VTDTGPGLKETDKAKIFEEF-ERADNGPTRKHGGAGLGLSISARIVEALGGEIGVDST 477 >gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 634 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 133/262 (50%), Gaps = 11/262 (4%) Query: 528 YSII--PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 Y+II P+ N +LT V++T+ + E+ E ++A+ IK+ F+ +S+EL Sbjct: 221 YNIIIDPILNQHRVLTGAVFIIVDITERKQIEKEREILYEESQRANRIKDEFLAILSHEL 280 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 RSPL I+G+ LLKTSK + K +E I ++ + L+ D+LD++ + G + L Sbjct: 281 RSPLNPILGWASLLKTSKFNADTIKHG--LEIIERNANLQTRLIEDLLDVSRILRGKLIL 338 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N + L ++ + + +I I+ D +G+ AD RL Q+ +LSNA+ Sbjct: 339 NTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSRLQQVIWNLLSNAIK 398 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 F+ G V + R + ++ + G I ++ VF+ F R+ G+GLGL Sbjct: 399 FTPSGGKVTIYLERIDKYAQITISDTGKGISKEFLPYVFDYFRQADSTTTRKFGGLGLGL 458 Query: 759 SIVESFINLHGGHVSISSSDEG 780 +IV + LHGG V S+ EG Sbjct: 459 AIVHHLVELHGGTVQAQSAGEG 480 >gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] Length = 771 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365 H YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182 Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 ++ + + S +S E H W P +GQ + + ++P G + + Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 510 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 20/357 (5%) Query: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHI--RNIAATCSRYYNESDGWDL 499 S+G+A+ +G I +N A L + E+ P T +N + + Y E DL Sbjct: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 Query: 500 FAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALT 556 + E+ +L T E LLS ++ I LP + LT ++++ + + L+ Sbjct: 522 RQTL------EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLS 572 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 + K K+ F+ VS+E+R+PLT IIGF++++K + G L N + +Y YI Sbjct: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S ++L++VND+LD++ +++G M L++ + L++ ++E + +E I I+ Sbjct: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDM 734 + +AD + + QI ILSNA+ F+ G +I+ N + I V++ G + Sbjct: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F + N+ + + G GLGL + ++ ++ + G I S+ T I P Sbjct: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 >gi|332142243|ref|YP_004427981.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552265|gb|AEA98983.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 884 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 132/246 (53%), Gaps = 32/246 (13%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612 + L K D +N F+ +++ELR+PL I+ +L+T ++ ++ ++Q++Y+ Sbjct: 519 QELEKQDNYRNEFLATLAHELRNPLGPIMSGASILETVDDDKTRKRVTAIINRQAEYMS- 577 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQSIATKMHENNIR 668 L+ND++D++ + G +KL + + + D+L++ V+Q + K H +I Sbjct: 578 ---------KLINDLMDVSRITRGKVKLEFERLSIQDVLSDSLEIVEQQVKAKKH--DIT 626 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + + + D+ RL QIFS I+ NA ++ + +++ +D + SVK+NG Sbjct: 627 VNCLDEDV--TVYGDKARLSQIFSNIIHNATKYTKESGKIVVDIRKDGVMIVVSVKDNGM 684 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV---TT 783 IPED K VFN F AH + G+G+GL++V + LH G VS+ S EGV +T Sbjct: 685 GIPEDRLKDVFNMFTQIEAHSTHTKGGLGIGLTLVSKLVALHHGEVSVMS--EGVGQGST 742 Query: 784 INCRIP 789 R+P Sbjct: 743 FEVRLP 748 >gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 584 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 37/358 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWD 498 ++ + EGV V D + L N AF S++ T E + P I +R+ D Sbjct: 253 LNGMGEGVMVTDRDAVVTLVNHAFCSMFATGAEVQGRPLLEI-------TRHP------D 299 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERAL 555 L+AA E LS + I L +T+L ++ D ++ A+ Sbjct: 300 LYAA--------------CREALSARQERHQEIALAGGKTVLVHWVPLSEGDGLQGAVAV 345 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 A ++ ++I+ FV +VS+ELR+P+T I G+ + L + L + + +++ I Sbjct: 346 FHDISAFKRVEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPQRAERFLLIIQN 405 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L LV D+L L+ +++G M + + L++ + + + + E ++++ + G Sbjct: 406 HADRLSGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPA-G 464 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 + G V ADR RL Q+ +L NA+ +S G +V ++ AR+ GD + SV+++G IPE Sbjct: 465 EAGLTVQADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEK 523 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V A G GLGLSIV+ + HGG + + S + + +P Sbjct: 524 DLPRLFERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLP 581 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 139/256 (54%), Gaps = 13/256 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++D V++++ L E KA ++K F+ ++S+E+R+PL ++GF++LL+T+ +L Sbjct: 333 IDISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETT---NL 389 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q +++ I + LL +VNDILD++ ++AG+++L + L +K Sbjct: 390 DADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAA 449 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDF 719 + +++ V D L + F+ D RL QI +++NA+ F+ +GS +L + R Sbjct: 450 TDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQGSVTLLIEQGERKTSAS 509 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 I F V++ G + + ++F RF A + R G GLGL+IV+S L G VS Sbjct: 510 IPVRFIVQDTGIGMAREALPTIFERF-QQADKFTTRYYGGTGLGLNIVKSLTELQKGSVS 568 Query: 774 ISSSDEGVTTINCRIP 789 + S+ + IP Sbjct: 569 VESTLGKGSRFTVEIP 584 >gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 530 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613 E A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Y +Y I Sbjct: 252 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 309 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LLNL+N+ILDL+ ++AG +LN I L ++++ + + I I + Sbjct: 310 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRATSRGITIHEVF 369 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732 + + D + + Q+ +LSNA+ F+ +G + LKA +G SVK+ GS IPE Sbjct: 370 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 429 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 430 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475 >gi|297205480|ref|ZP_06922876.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] gi|297150058|gb|EFH30355.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] Length = 387 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 130/232 (56%), Gaps = 6/232 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ LLK SL + Q +YV+ + + Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ D T+++ K+N + + L +L +V + E NI + V + A Sbjct: 206 LANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAGFELEAEEKNISLNVNTKPDDLVIDA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +++NA+ + S + L A + + + V+N+G +IP++ + +F R Sbjct: 266 DAEKLVRVFNNLIANALKYGHGASFINLSAKKIKANLVEIRVENDGEAIPKEALQKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V + + G GLGL+IV+ I+LH G ++ S+D+ +T+ +P K Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITCESNDQ-LTSFIIHLPFK 376 >gi|120602021|ref|YP_966421.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120562250|gb|ABM27994.1| Cache sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 733 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A+ K++F+ ++S+E+R+PL ++G DLL+ + L++ Q++Y+ Sbjct: 339 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 395 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L +L+ DILDL+ ++AG + L L+D+L ++++ A E + ++ D Sbjct: 396 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 455 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729 G F+ D R+ QI ++ NAM F+++G +L +F V ++G Sbjct: 456 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQVKLEVKTLLPMPDGRARILFMVHDSGCG 515 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ S+ F V + +GVGLGL+I + ++ + G +++ S Sbjct: 516 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 564 >gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 1277 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ ++ +++KN FV VS+ELR+PLT I G L+ LG + Q + Sbjct: 1038 RDITER----KRIEQMKNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAI 1093 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIK 670 ++S L L+ND+LD+ + AG M+ + ++ LL + + + H+ +R++ Sbjct: 1094 AHSNSLRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQ 1153 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V D + D QRL Q+ + +LSNA FS G V++ SV +NG I Sbjct: 1154 VEDDALVN---VDTQRLAQVMANLLSNAAKFSPPGGNVVVCLQTLGEALRVSVSDNGPGI 1210 Query: 731 PEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 PE +F++F S A G Q+ G GLGL+I + I GG + SS T Sbjct: 1211 PEAFKPRIFSKF-SQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFE 1269 Query: 788 IP 789 +P Sbjct: 1270 LP 1271 >gi|83954248|ref|ZP_00962968.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal [Sulfitobacter sp. NAS-14.1] gi|83841285|gb|EAP80455.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal [Sulfitobacter sp. NAS-14.1] Length = 669 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 171/382 (44%), Gaps = 38/382 (9%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESD 495 E ID + EG F R+ + N +R + + PG + + +R + S Sbjct: 286 AEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGVTMGELVVNWANRTESLSG 345 Query: 496 GWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 A + R Q L+ + +D+ L+ + P+ T+ + +VT RA+ Sbjct: 346 SKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTEAKTPHGYTVGIWTDVTAEKRAQ-- 403 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK--------LGSLNSKQ 606 EA AD K F+ +VS+ELR+PLT I G + ++ S + +L + Sbjct: 404 -----EAAEAADREKTEFLNNVSHELRTPLTVIFGRSSFMRHSDKMPQAQRLMSALTADG 458 Query: 607 S-------QYVEY----------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 S +EY I+ SS ++ LV D+LD V G ++L+ + L++ Sbjct: 459 SGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLDE 518 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + V Q + + + DG + VAD+ R+ QI +++NA+ F+S+G + Sbjct: 519 IARTVTQELQPAAEAKGLTLTYAGDGPAAT-VADKVRVKQILYNLITNAIKFTSEGK-IH 576 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 L + +FSV + G+ I E+ VF RF V + Q G+GLGL+I E L Sbjct: 577 LSMLHSTDEIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLAEL 636 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG +S+ S +T + +P Sbjct: 637 HGGSLSLESKLGVGSTFSLTLP 658 >gi|163797314|ref|ZP_02191267.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177405|gb|EDP61961.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 485 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 2/224 (0%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ +S+ELR+PL I+GF++ LG + S+ Y I S++ LL ++NDIL Sbjct: 239 KSTFLATMSHELRTPLNAIMGFSEAQAKQLLGPVPSRYRDYANDIHTSASHLLAVLNDIL 298 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D+A +DA + L + ++ + I I + + + + AD + L Sbjct: 299 DMARMDARRLTLYEEEFNPSKAVDMAVRMIDPDRKRAGIVLSIENRAMGSTLRADERLLR 358 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QI +LSNA+ F+S G TV + + SV++ G+ I D+ K V F Sbjct: 359 QIVLNLLSNAVKFTSPGGTVTVALDQSASGLTLSVRDTGTGISPDLLKRVAEPFFQADQS 418 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RR G GLGLS+V+ F LHGG ++I S+ T + R P+ Sbjct: 419 YARRHQGTGLGLSLVKGFAELHGGSIAIESTLGEGTMVAVRFPA 462 >gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 927 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ QI S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 771 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 13/229 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL KA IK+ F+ ++S+E+R+PL I+GFT LL S + +Q Y+ I S+ Sbjct: 275 RKEAL-KASHIKSEFLANMSHEIRTPLNGILGFTKLLDRSPM---TPRQEDYLSTIHKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDG 675 LL ++ND+LD + ++AG + L+++ + L+DL+ +V+ +A E + I SD Sbjct: 331 ESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQAAIIYSDV 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731 + + + D R+ Q+ + ++SNA+ F+ +GS V+ L+ R I +V + G + Sbjct: 391 PV-ALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEEDRGAEAIIKITVTDTGPGLN 449 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + K +F+ F + R Q G GLGL+I + + GG + I S + Sbjct: 450 PEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSRE 498 >gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] Length = 526 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ +S+ELR+PL I+GF++++ +G + N +Y+ I S LL L+N+I Sbjct: 270 KSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKLINEI 329 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ ++AG +LN + L + E +Q + K ++ +++ + + + AD + + Sbjct: 330 LDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWADARAV 389 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VS 744 QI +LSNA+ F+ G T+ LK +G + ++++ G IPE+ V + F S Sbjct: 390 RQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSFGQGS 449 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A + +G GLGL IV++ + +H G + S T + P Sbjct: 450 IAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFP 494 >gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 995 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 26/373 (6%) Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474 + E+ +Q + E K Q ID L G+AV + +I+L N F L++ + Sbjct: 119 IMEDDILQKEQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKGE-- 176 Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLELLSDS--VLEYSI 530 C SD LF I F++ K + T E+ D+ L Y+ Sbjct: 177 ----------VDCHIGMQASDLHYLFDKEINKNKFENTEKRTRTTKEIKIDTGRTLRYNC 226 Query: 531 IPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PL + F ++T+ + ER + + E K + K+SF+ +S+ELR+PL Sbjct: 227 FPLNEENDFVGYLWEFEDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNG 286 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF LL+ + SLN +Q + + I + + LL+L+NDILD++ ++ G +K++ + Sbjct: 287 ILGFAQLLEMDE--SLNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVH 344 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK- 704 L ++ E + + NI I D V AD RL QI +L NA+ ++ + Sbjct: 345 LLTVIKECINIVQPLAKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQEN 404 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 G ++ ++N +I V + G + VF F + G G+GLS+V+ Sbjct: 405 GKVIVFCRLQENKQYIHIV-DTGVGFSVEEYTKVFVPFY-RIESTKEEGTGIGLSLVKQL 462 Query: 765 INLHGGHVSISSS 777 ++L GG ++++S+ Sbjct: 463 VHLMGGEINVTSN 475 >gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 710 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 27/264 (10%) Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 LP+A ++ V+VT+ +R R LT EA A+ K F+ +S+E+R+P+ ++G T Sbjct: 280 LPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSHEIRTPMNGVMGMT 339 Query: 592 DL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L L+T L +Q +Y++ S+ LL+++NDILD + ++AG M+L + L Sbjct: 340 ELALQT----DLTPEQREYLDLARQSALSLLDIINDILDFSRIEAGRMELARAPFSLRRT 395 Query: 651 LNEVKQ---SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L + ++A + N++R+ V + G V D RL Q+ + ++SN + F+ GS Sbjct: 396 LGSCLRLFDNLAAR-QGNDLRLAVAQEAPDG-LVGDAGRLSQVIANLVSNGLKFTRDGSV 453 Query: 708 VI-----------LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--- 752 + L R + F+FSV + G IP D +F+ F + G R Sbjct: 454 RVTVDTAPPLHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYF-TQLDAGLSREAG 512 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGLSI + + L GG + + S Sbjct: 513 GTGLGLSISRNLVALMGGRIWVES 536 >gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 724 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 15/233 (6%) Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 TE EAL KA+ K+ F+ ++S+E+R+P+ +IG LL + L + Q Y+E Sbjct: 200 TELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPL---DKVQQGYMES 256 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + LL ++N+ILD++ V+AG++ L L L+ Q + E +R+++ Sbjct: 257 LSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRFLDRSLQPFVLRGQEKGVRVRLE 316 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNG 727 + L V D RL QI +L NA+ F+ KGS T L + +NG FSV + G Sbjct: 317 AYPGLPELVLGDPVRLRQILGNLLGNALKFTQKGSITLTAALTGSGENGVGLKFSVADTG 376 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777 I + + +F +F S A R G GLGLSI +S + L GG +S+ S+ Sbjct: 377 IGIAPEAIEVIFEKF-SQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQSA 428 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 2/227 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R + EKN L +AD +K+ F+ + S+ELR+PL IIG + L+ +G + Q+ + Sbjct: 422 RQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRL 481 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S+ L LV+D+LD+ + G M+L+ + + L V Q + + + V Sbjct: 482 ITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVD 541 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G L + AD R QI +LSNA+ + I R +G +++++G I Sbjct: 542 LPGDLPALTADPVRFEQILFNLLSNAVKYGGGSEVYITAEERPSGHVALAIRDHGPGIAA 601 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 D + +F+ + GQ G GLGL+I +L G + +SS+ Sbjct: 602 DSMERIFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSST 648 >gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 708 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 156/290 (53%), Gaps = 17/290 (5%) Query: 498 DLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555 +L A I F+ +R ++L + L +V E + L +A +L F + + RAE AL Sbjct: 404 NLVALAIEGFERQRAQQALSKAKQELELTV-ENRTVQLKSANKLLRF-EIAERKRAEVAL 461 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 E A K++F+ ++S+ELR+PL IIG++++L+ +L S + ++ I Sbjct: 462 QEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLE--ELASDEGLEDLLPDIQKI 519 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 ++ LL L+NDILDL+ ++AG M+L + L DL+ +V ++ H+N+ +++V Sbjct: 520 RSAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAHKNSNKLEVSC 579 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNN---G 727 LG D ++ QI +LSNA+ F+ G TV L A R+ N D+++ + G Sbjct: 580 CSDLGVVFTDLTKVRQILFNLLSNALKFTENG-TVRLSATREMGSNSDWVYLCVADTGIG 638 Query: 728 SSIPEDMCK-SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S+ + C VFN+ ++ R + G GLGL+I F + GG +++ S Sbjct: 639 MSVEQQQCLFEVFNQGDASTTR-KYGGTGLGLAISRRFCQMMGGDITVES 687 >gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 895 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 11/251 (4%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R+E L N L + D+ K +F ++S+ELR+PLT +IG D L+ + ++ Sbjct: 197 DENRSE--LEASNLKLVEMDKAKTNFFANISHELRTPLTLLIGPLDRLRHNGDQPSAKER 254 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + ++ + ++ L+ L+ND+L+L +D+G ++L +T+ L L + +S E Sbjct: 255 EELLDIMQQNAMRLMRLINDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPMASERR 314 Query: 667 IRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724 + I DG + DR ++ +I +L NA+ F+ G +IL+A RD G+F+ V+ Sbjct: 315 LDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARRD-GEFLRIEVE 373 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGV 781 ++G I + S+F+RF RR GVG+GL++V LHGG V SS EG Sbjct: 374 DSGQGIAAEELASIFDRFWQAETSSNRRYQGVGIGLALVRDLARLHGGDVEASSVQGEGT 433 Query: 782 ---TTINCRIP 789 ++N +P Sbjct: 434 VMRVSLNAEVP 444 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 682 ADRQRLLQIFSKILSNAMD----FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 ++ +L+ +F +L N++D +G + ++ + ++NG I D Sbjct: 773 GNQNQLMHVFINLLQNSVDSLRERGGEGREIRIRCSEVEERVSLVFEDNGMGISPDEIDR 832 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF+ F + GQ GVGLGLSI I H G +++ S Sbjct: 833 VFDAFFTTKKVGQ--GVGLGLSICHRIIQQHKGSINVES 869 >gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1013 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 19/223 (8%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627 K+ F+ ++S+E+R+P+ I+GF DLLK + Q++ YV+ ISAS LL L+NDI Sbjct: 531 KSEFLANMSHEIRTPMNAILGFCDLLK----DRITEPQTRGYVDLISASGKTLLELINDI 586 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686 LDL+ ++AG ++LN+ + L +L+ E++Q K + N+ + V I + + + D R Sbjct: 587 LDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIR 646 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMC 735 L QI ++ NA+ F+ +G I A+ N D I SV+++G I +D Sbjct: 647 LRQILFNVVGNALKFTEQGYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQQ 706 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+ F + R+ G GLGL+I + G + + S Sbjct: 707 IRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQS 749 >gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 807 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L +E+ +S+ K+ Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673 Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L G V AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 674 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP++ K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785 >gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1267 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 13/256 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + E+ALTE E + +K+ F+ ++S+E+R+P+ IIGF LL ++ LN Sbjct: 486 DVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQ---LN 542 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 SKQ Y+ I + S LL ++NDILD + ++AG M + + L +++ ++ + + Sbjct: 543 SKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQAS 602 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + + + G D RL Q+ + +NA+ FS +G+ + D D Sbjct: 603 QKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQSDSDSD 662 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV++NG + E+ + +FN F R+ G GLGL+I + + L GG +S Sbjct: 663 QVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEIS 722 Query: 774 ISSSDEGVTTINCRIP 789 +SS +T + +P Sbjct: 723 VSSEYGVGSTFSFSLP 738 >gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei BCC215] gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] Length = 771 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 123/512 (24%), Positives = 217/512 (42%), Gaps = 81/512 (15%) Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367 YE +L +LT + + D++ L + N S L D + P D R+ + Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGRGA 184 Query: 368 QLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMFEN 418 ++ + + S +S E H W P +GQ + + ++P G + + + Sbjct: 185 RVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRD 241 Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------- 471 ++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 242 ISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCD 297 Query: 472 -----------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDERK 512 N P + I N+ C R DG + A + S FD+ Sbjct: 298 VAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER-- 351 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIK 569 D+ + S+ + V S+R R +A R+AD +K Sbjct: 352 ----------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNRLK 395 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DILD Sbjct: 396 DELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILD 452 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRL 687 +++ G ++L+ + L ++N+V ++ + I + V + LG+ + D +RL Sbjct: 453 ASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGERL 510 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 566 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 16/251 (6%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S+ E L ++ EA KA FV +++ELR+PL ++G +LL ++LG +Q Sbjct: 187 SLEREVELRKRAEASEKA---TKEFVAMINHELRTPLNGVLGSAELLSKTELGD---EQQ 240 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY+ + S +L ++ND+LD + ++AG+M++ DL N + A K E I Sbjct: 241 QYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 300 Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + D KLG V D +R+ QI ++ NA+ F+ G V+L+ +G F V+ Sbjct: 301 HFSI--DKKLGIPEFLVGDFERITQILVNLIGNAIKFTHLGG-VVLRVEWVDGYAHFEVE 357 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP + K++F+ FV A R +R G GLGL+I ++ ++L G +S S Sbjct: 358 DTGIGIPFEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMDGEISFVSEPRKG 416 Query: 782 TTINCRIPSKE 792 TT +P K+ Sbjct: 417 TTFKVVLPLKQ 427 >gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. BTAi1] gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 532 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 8/218 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILL 621 A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Y EY I S LL Sbjct: 259 ANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPVYKEYSADIHNSGVHLL 316 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 NL+N+ILDL+ ++AG +LN + L ++ + + + + I + + + Sbjct: 317 NLINEILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGLTIHEVFEQNMPRLW 376 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD + + Q+ +LSNA+ F+ +G + LKA +G SVK+ GS IPE+ V Sbjct: 377 ADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLA 436 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F SN+ + +G GLGL I ++ I +HGG ++ S Sbjct: 437 SFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKS 474 >gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 929 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 136/251 (54%), Gaps = 11/251 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R +R L E +D++K++F+ ++S+E+R+PL I+GF+ ++ S + + Sbjct: 501 DITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDD 557 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + + A++ LL L+N+ILDL+ ++AG+++ + + L+ L NE+ ++ + Sbjct: 558 EERKNYYDIVEANNERLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRCP 617 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++++ + V D+ R+ Q+ S ++ NA F++ GS V R + F Sbjct: 618 ---MGVELVYEASDEDIVIEGDKNRIFQVVSNLIGNAFKFTTNGS-VSYGYRRKGSEIEF 673 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G I D VF RFV + Q G GLGLSI ++ I GG +S+SS Sbjct: 674 HVSDTGIGIEADKLSKVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGTISVSSEMGKG 731 Query: 782 TTINCRIPSKE 792 TT +P E Sbjct: 732 TTFLFTLPLSE 742 >gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1] gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1] Length = 1039 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 10/235 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + A+ A E +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q Sbjct: 362 LEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---DLTATQKD 418 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YV+ I SS +LL+L+NDILD + +++G++++N + + + + ++ +A K+ E I Sbjct: 419 YVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRETIYDIASIVAPKVKEKGIE 478 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-GDFIFSV 723 + V D + +AD R+ Q+ +SNA+ F+ KGS I + +N +F V Sbjct: 479 LNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDKGSVTIGVHYQGESNNMASLMFEV 538 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++G I ++ +F F R+ G GLGL+I I L GG + + S Sbjct: 539 QDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDS 593 >gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 531 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613 E A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Y +Y I Sbjct: 252 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 309 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LLNL+N+ILDL+ ++AG +LN I L ++ + + + I I + Sbjct: 310 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRATSRGITIHEVF 369 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732 + + D + + Q+ +LSNA+ F+ +G + LKA +G SVK+ GS IPE Sbjct: 370 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 429 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 430 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475 >gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1310 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1053 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1112 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1113 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1170 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1171 QANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1230 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 1231 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1290 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1291 APNEGTLVEITFPSQ 1305 >gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 848 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ + E+ + L KA++ K F+ ++++ELR+PL IIG+ D L G LN++Q + ++ Sbjct: 365 EKKVKERTKQLEKANQAKREFLGNINHELRTPLNLIIGYIDRLYQD--GYLNNEQKKQLD 422 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669 I +S LL+L+N ILD++ +++G + L ++ L+ LL +++ + N+ + Sbjct: 423 IIDRNSQHLLSLINQILDISKIESGHITLQENSFNLSQLLTNLQEVFNLSCYSKGLNLIL 482 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFI 720 + + KL AD+ +L QI +L NA+ F+ KG I L +++ ++ Sbjct: 483 ENKIEDKLNYIYADKNKLKQILINLLHNAVKFTDKGMIKISAEVSNHRSLHYSKNQPNYT 542 Query: 721 F--SVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 VK+ G I + +F F + R +G GLGL I FI L GG++++ SS Sbjct: 543 LRIQVKDTGKGIAREEISQLFKAFEQTQTGRNLNQGTGLGLYISHQFIKLMGGNITVESS 602 Query: 778 DEGVTTINCRIPSK 791 TT IP K Sbjct: 603 PHSGTTFTLEIPVK 616 >gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1200 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ R E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 690 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 749 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 750 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 808 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ AA D+ + Sbjct: 809 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 868 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++++G I + + +F F + AH G G GLGLSI + L G +S+ Sbjct: 869 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 925 Query: 775 SSSDEGVTTINCRIP 789 SS T +N +P Sbjct: 926 HSSPGEGTLVNIDLP 940 >gi|289625887|ref|ZP_06458841.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867533|gb|EGH02242.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1185 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ R E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ AA D+ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 847 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++++G I + + +F F + AH G G GLGLSI + L G +S+ Sbjct: 848 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 904 Query: 775 SSSDEGVTTINCRIP 789 SS T +N +P Sbjct: 905 HSSPGEGTLVNIDLP 919 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 38/358 (10%) Query: 456 IKLSNPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNES-------DGWDLFAAIIT 505 +K S FRSL KT E+ LSP I + + + D ++LF Sbjct: 206 LKESAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGRTRHEVLGRDYYELFVPERF 265 Query: 506 SFDDERK---SLQG-TLELLSDSVL---------EYSIIPLPNAQ-----TMLTFVNVTD 547 D R+ L G L LL + VL ++S+ L +A+ + ++T+ Sbjct: 266 WPDHNRQFATVLSGNPLRLLENYVLARGGEERMIQWSLSRLLDAKGGALGVLAVGQDITE 325 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R+E L E +A +A K+ F+ ++S+E+R+P++ IIG +++ + +L +Q Sbjct: 326 RKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMTLNT---NLTGEQQ 382 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+ + ++ LL+++NDILD++ ++A M+L L ++L + + + E I Sbjct: 383 GYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQLSVLKVQAEEKGI 442 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 ++ +SD + D RL QI ++ NA+ F+ KG + + + + F Sbjct: 443 ELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEKGYVEVSVDHVGSFEEGAVLEFR 502 Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD 778 VK+ G I ED C+ +F FV NA +R G GLGL+I + + GGH++ SS + Sbjct: 503 VKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFSSRE 560 >gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 917 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/393 (25%), Positives = 175/393 (44%), Gaps = 18/393 (4%) Query: 412 TIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 T+ +F+ ++ LE + + ++ +S+G ++ D RI ++N + ++ + Sbjct: 261 TLSLFQESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIFPSH 320 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----- 525 + G R I E+ DL + DER L L D Sbjct: 321 KPNTLRGRSFREIV----EQNLETGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGER 376 Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 + S +P+ T+ + ++T+ + + L A+E K+ F+ +S+ELR+PL Sbjct: 377 WVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPL 436 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 IIG++++L + ++ I+++ LL L+NDILDL+ ++A M + T Sbjct: 437 NAIIGYSEMLIEEARDHKEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDVFLET 496 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L +LL +V ++A M N + LG +D+ +L Q +LSNA F +K Sbjct: 497 FSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKF-TK 555 Query: 705 GSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G VIL+ R+ +F V + G + + +FN F R G GLGL Sbjct: 556 GGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGL 615 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SI SF L GG V++ S + +P+K Sbjct: 616 SITRSFCRLIGGVVTVESEAGKGSVFTMEVPAK 648 >gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 1133 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 877 DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 936 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L++ + LN+ ++E + Sbjct: 937 --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 994 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ G + VAD + + QI IL+NA+ F+ G +++ + + NG Sbjct: 995 QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1054 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I +++ G + + F V+ R + G GLGL + ++ + +I+S+ Sbjct: 1055 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSA 1114 Query: 778 DEGVTTINCRIPSK 791 T + PS+ Sbjct: 1115 PNEGTLVEISFPSQ 1128 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL I+G LL + +G+ Q++Y+E S L L++DIL Sbjct: 302 KSEFLANMSHEIRTPLNGIMGMIQLLDGTPVGA---DQNKYIELALTSCNRLTRLLSDIL 358 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 DL+ ++AG+M+++ S DL N + A + + +K I D + + D R+ Sbjct: 359 DLSRIEAGMMEIHESKFRFADLRNSILGLFAVESLTKAVTLKCIIDPTIHPEVIGDEGRV 418 Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRF 742 LQI ++ N + F+ +GS + + N D+ +F+V + G I ED K++F F Sbjct: 419 LQILFNLVGNGLKFTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIGIHEDHLKNLFKPF 478 Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V ++ + +G GLGLSIV+ ++L GG + + S T++N +P K+ Sbjct: 479 VQIEKSYTRKYQGAGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVVLPFKQ 530 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 9/222 (4%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ K+ F+ VS+ELR+PL I+G+ ++L +K+ + ++++ I S+ + Sbjct: 345 AAESANSAKDRFLAMVSHELRTPLNPIVGYAEIL-AAKIE--DPMAQRFLKIIKESAKGM 401 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +LV+DILD + +++G + + T ++DLL+ V + I + E +I+V DG Sbjct: 402 ASLVSDILDYSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWV 461 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCK 736 AD+++L Q+ S +++NA F+ G +I +A +SV+ + G IPE + Sbjct: 462 EADKRKLSQVVSNLVANACKFTQNGKILISSSASQTSKEAYSVRIEVSDTGIGIPESELE 521 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++F F + + H+ + RGVGLGL+I + GG +S+SS Sbjct: 522 TIFEPFEQLGSVHKAETRGVGLGLAICRQLVGALGGTISVSS 563 >gi|46580686|ref|YP_011494.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450105|gb|AAS96754.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 733 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A+ K++F+ ++S+E+R+PL ++G DLL+ + L++ Q++Y+ Sbjct: 339 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 395 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L +L+ DILDL+ ++AG + L L+D+L ++++ A E + ++ D Sbjct: 396 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 455 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729 G F+ D R+ QI ++ NAM F+++G +L +F V ++G Sbjct: 456 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQMKLEVKTLLPMPDGRARILFMVHDSGCG 515 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ S+ F V + +GVGLGL+I + ++ + G +++ S Sbjct: 516 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 564 >gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] Length = 1191 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 26/259 (10%) Query: 547 DSVR-AERALTEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 DS+R +E L ++ EAL A ++ K+ F+ ++S+E+R+P+ +I GF+DLL Sbjct: 782 DSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLL 841 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 S+L N KQ ++E + A+S LL L+NDILD + ++A + LN L LL EV+ Sbjct: 842 RSQL---NPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVR 898 Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 S + +++ I + D RL Q+ S ++SNA+ F+ G I + + Sbjct: 899 FSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTETGEVKIAVSQQ 958 Query: 715 D----NGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 NG I FSV++ G I D +++F F RR G GLGL+I Sbjct: 959 GETEVNGGIIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTGLGLTICRRI 1018 Query: 765 INLHGGHVSISSS-DEGVT 782 + L GG + + S D G T Sbjct: 1019 VQLMGGEIHVDSEVDVGST 1037 >gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 1219 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 14/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L ++ + L + K+ F+ ++S+ELR+PL +++ + LL +K G+L+SKQ +Y Sbjct: 523 KARMQLEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSSKQIEY 582 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S + LL ++++ILDL+ VDAG M++NY + L D+ V+Q+ A +I + Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLPDIEAFVEQNFAAVASRKHINL 642 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDN--------GD 718 V + +L S V D R+ QI +LSNA F++ GS +L KA +D D Sbjct: 643 GVRIEEELPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELLVEKADKDKLPVYLNAESD 702 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 ++ F+VK+ G IP D +F F R+ G GLGLSI L GG +++ Sbjct: 703 YVSFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGITVE 762 Query: 776 SSDEGVTTINCRIPS 790 S + + +P+ Sbjct: 763 SEEGKGSCFTLFLPA 777 >gi|289646215|ref|ZP_06477558.1| PAS [Pseudomonas syringae pv. aesculi str. 2250] Length = 1185 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ R E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ AA D+ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 847 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++++G I + + +F F + AH G G GLGLSI + L G +S+ Sbjct: 848 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 904 Query: 775 SSSDEGVTTINCRIP 789 SS T +N +P Sbjct: 905 HSSPGEGTLVNIDLP 919 >gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1082 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE AL + E A+ K+ F+ +S+ELR+PL I+GFT +++ SL Sbjct: 577 DITERKQAEEALKQAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQRDH--SLK 634 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q ++ I S LL L+NDIL++ ++AG N + L LL+ ++ + K Sbjct: 635 GEHRQNLDIIGRSGEHLLELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAE 694 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E N+++ + L ++ D +L Q+ +L NA+ F+ +G ++ + D Sbjct: 695 EKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTNHSTDQNPT 754 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F +++ G I + +F F + R G GLGL I F+ L GG +++S Sbjct: 755 IILTFEIEDTGPGIAAEEVNQLFEAFGQTETGRNSNEGTGLGLPISRKFVELMGGEITVS 814 Query: 776 S 776 S Sbjct: 815 S 815 >gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell surface physiology and symbiosis [Sinorhizobium meliloti 1021] gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 1134 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 878 DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 937 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L++ + LN+ ++E + Sbjct: 938 --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 995 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ G + VAD + + QI IL+NA+ F+ G +++ + + NG Sbjct: 996 QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1055 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I +++ G + + F V+ R + G GLGL + ++ + +I+S+ Sbjct: 1056 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSA 1115 Query: 778 DEGVTTINCRIPSK 791 T + PS+ Sbjct: 1116 PNEGTLVEISFPSQ 1129 >gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 809 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 559 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 616 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L +E+ +S+ K+ Sbjct: 617 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 675 Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L G V AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 676 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 732 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP++ K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 733 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 787 >gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] Length = 771 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364 H YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 186 Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414 L E++ +S+ E H W P +GQ + + ++P G + Sbjct: 187 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 237 Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471 + +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 238 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 293 Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508 N P + I N+ C R DG + A + S FD Sbjct: 294 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 349 Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566 + D+ + S+ + V S+R R +A R+AD Sbjct: 350 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 391 Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V Sbjct: 392 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 448 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILD +++ G ++L+ + L ++N+V ++ + I + V D + Sbjct: 449 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 508 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 568 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 820 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 570 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 627 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L +E+ +S+ K+ Sbjct: 628 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 686 Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L G V AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 687 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 743 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP++ K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 744 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 798 >gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 932 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 118/220 (53%), Gaps = 10/220 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A ++K+ F+ + S+E+R+PL I+GF++LLK ++L L Q Y+E I S+ LL + Sbjct: 265 QASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPL---QEDYLETIYESAKGLLTI 321 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682 +NDILD + ++ G + L Y + L +L E + A HE +R+ I D + + Sbjct: 322 INDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIVDHDIPEHLLG 381 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D RL Q+ + +LSNA+ F++ G +I + D D F + ++G + +D + + Sbjct: 382 DPLRLKQVLTNLLSNAIKFTNVGHILISVSKEDRADNQITLQFRITDSGIGLNQDQQEKL 441 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+ F R G GLGL+I + ++ G + + S Sbjct: 442 FDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVES 481 >gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] Length = 772 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%) Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364 H YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 187 Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414 L E++ +S+ E H W P +GQ + + ++P G + Sbjct: 188 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 238 Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471 + +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 239 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 294 Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508 N P + I N+ C R DG + A + S FD Sbjct: 295 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 350 Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566 + D+ + S+ + V S+R R +A R+AD Sbjct: 351 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 392 Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V Sbjct: 393 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 449 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILD +++ G ++L+ + L ++N+V ++ + I + V D + Sbjct: 450 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 509 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 RL Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 510 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 569 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 570 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 603 >gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 999 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 8/250 (3%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +P + + T N + + E ++ +++K+ F+ VS+ELR+PLT+I G Sbjct: 470 IPVSLIVTTMRNEAGEITGYLGIAEDITEYKRMNKMKSEFISTVSHELRTPLTSISGALG 529 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ S+ L K + ++ ++ L +L+ND+LD+ + AG KL++ + L++L Sbjct: 530 LIIGSRFEELPDKTQKLLKTAHRNNQRLSHLINDLLDIEKIAAG--KLHFD-MRLHELTL 586 Query: 653 EVKQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 V+Q+I T H ++ I++I D D QRLLQ+ + +LSNA+ FSS VI Sbjct: 587 LVEQAIETNQHYGSSRDVSIRLICDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVI 646 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767 ++ DNG I SV + G I + + +F RF R G GLGL+I I Sbjct: 647 VEVTTDNGKAIVSVIDQGPGINQAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIER 706 Query: 768 HGGHVSISSS 777 GG + S+ Sbjct: 707 MGGQIDFEST 716 >gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1295 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 142/269 (52%), Gaps = 16/269 (5%) Query: 533 LPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 +P+ ++ +V+ + A L E A+ K++F+ ++S+E+R+PL +IG Sbjct: 756 MPDGSSLWNGYLADVSSAKMASEQLRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVIGM 815 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 TDLL S +L+ +Q +++ + SS LL ++NDILD + ++AG + + L + Sbjct: 816 TDLLLGS---TLSHRQRAHLQIVKQSSDALLTILNDILDFSKIEAGKLVAERVSFNLRQV 872 Query: 651 LNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + E+ +++A + + I I I+ + D RL Q+ ++ NA+ F+S+G ++ Sbjct: 873 VGEMLKALALRASDKGIELIGDIAADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQGEVIV 932 Query: 710 -LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 L+ + N D + F++ ++G IPE+ ++F+ F RR G GLGL+I Sbjct: 933 RLECSAGNADEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTISAR 992 Query: 764 FINLHGGHVSISSS-DEGVT---TINCRI 788 L GGH+ + S+ +G T T+ C I Sbjct: 993 LAELLGGHIRVDSTLGQGSTFHFTLRCGI 1021 >gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 655 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 10/234 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+AL + + A+ K+ F+ ++S+E+R+P+ IIGF+D+L SK+ + KQ Y+ Sbjct: 158 AEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAIIGFSDIL-ASKIT--DKKQINYI 214 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669 I ++ LL L++DILDL+ ++AG +++ Y + L + ++Q + K+ E NI I Sbjct: 215 SSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNLQGIFIALQQVFSLKIAEKNIEFI 274 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKN 725 I + S D RL Q+ ++ NA+ F++ G + D D +V++ Sbjct: 275 MEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNSGYVKLCANKIDTEENYIDLTLAVED 334 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +G IP + +F F + R+ G GLGL+I + + + G +S++SS Sbjct: 335 SGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLTITKRLVEMMNGQISLTSS 388 >gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] Length = 836 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 128/231 (55%), Gaps = 4/231 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623 A+ K+ F+ ++S+ELR+PL I GF++++ T G L +++ +Y I S LL+L Sbjct: 593 ANHAKSEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDILGSGQHLLSL 652 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +NDILD++ ++AG M L + L++++ + + + + + ++I+V +L AD Sbjct: 653 INDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHMP-QLPEIEAD 711 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 + L QI +L+NA+ F+ + TV + AA + + +V + G I + + F Sbjct: 712 FRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNNVHIAVADTGIGIAAKDMERLARPFE 771 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + N + G GLGL++ +S I +H G + I S++ TT+N +P ++ Sbjct: 772 QIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILPIRQ 822 >gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 1756 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 13/259 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597 +LT +VT+ + AL + EA A + K F+ ++S+E+R+P+ IIG T L L+T Sbjct: 1009 VLTMSDVTERRQINEALRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTD 1068 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L +Q+ Y+ I ++S LL ++ND+LD + ++AG ++L L++LL ++ Sbjct: 1069 ----LPPRQADYLRKIDSASQSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDL 1124 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 A + E + + + ++ + + D RL QI +LSNA+ F+ G V+ D Sbjct: 1125 FAVRAKEKGVELLFAVEPEVPARLNGDMLRLGQILINLLSNAIKFTDHGEVVLAIRQLDG 1184 Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 FSV++ G + + +F F R+ G GLGL+I + ++L G Sbjct: 1185 APPGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMG 1244 Query: 770 GHVSISSSDEGVTTINCRI 788 G + ++S+ +T + I Sbjct: 1245 GQIQVNSAAGAGSTFHFSI 1263 >gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1055 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 174/384 (45%), Gaps = 56/384 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 687 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------ETEGK-- 724 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 725 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 784 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 785 FCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADE 844 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K GS+ N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 845 KFGSIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIA 904 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 905 LMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEM 964 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R A + G GLGL + ++ + Sbjct: 965 NGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMV 1024 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 + +I S+ T + P Sbjct: 1025 EANRAQFAIDSTPGHGTVVEIAFP 1048 >gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 807 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L +E+ +S+ K+ Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673 Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L G V AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 674 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP++ K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785 >gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] Length = 1057 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT + E L E +A EIK+ F+ ++S+E+R+P+ IIG + L LKT L Sbjct: 276 DVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 331 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ Y+ I S+++LL ++NDILD + ++AG + + L+D+L+ V K Sbjct: 332 TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYLDDVLHNVSMVTGQKA 391 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717 E + + I + D RL QI +++NA+ F+ +G S ++++ D Sbjct: 392 FEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQGEISVSVKVIRSLDDKI 451 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + FSVK+ G + E+ +FN F R+ G GLGLSI + L GG +S+ Sbjct: 452 ELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSICRRLVELMGGEISVD 511 Query: 776 S 776 S Sbjct: 512 S 512 >gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 677 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 21/250 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + ++A+ K L A K+ F+ ++S+ELR+PL +++ + LL +K G+L KQ +Y Sbjct: 130 KTQQAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTDKQLEY 189 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+NDILDL+ V+AG ++++ I L D + +KQ + Sbjct: 190 AQTIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENKELAF 249 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------------------STVIL 710 + +++ + D QRL QI + +LSNA F+ +G ST ++ Sbjct: 250 DITVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVSTSLI 309 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + FSV + G IP+D + +F F RR G GLGLSI L Sbjct: 310 TDLQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQLARLL 369 Query: 769 GGHVSISSSD 778 GG + + S + Sbjct: 370 GGDLQLHSEE 379 >gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 589 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 3/217 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LRK + ++ FV +VS+ELR+PLT+I GF + L +G +++ +Y++ I + L Sbjct: 355 LRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGESQARE-RYLKVIHQETLRLN 413 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+N++LDLA +++G ++ + I + L+ V + ++ + I + L + Sbjct: 414 RLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPLML 473 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 + R+ Q+ + +L NA+ +S GSTV ++AA G V + G IP + ++ R Sbjct: 474 GNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGREGKITVEVADRGPGIPPEDLPHIWER 533 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G GLGL+IV I HGG V + S Sbjct: 534 FHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQS 570 >gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1193 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 33/279 (11%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T A+ AL + E+ A+ K+ F+ ++S+E+R+P+ I+GF +LL+ G Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725 Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ +S+ Y+ I++S ILL L+NDILDL+ +D+G +++NY I L L+ E+ Q Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LK 711 + + + + I+D + + D RL QI +L NA+ F+ +G+ I L Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845 Query: 712 AARDNGDFIF------------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 R+ D ++ SV++ G I + +F+ F + + R+ Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGL+I + GG + + S +T P+ Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPN 944 >gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 291 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + + + V D Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGKTMLVFDD 162 Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ +G + + F V++ G I + Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F FV Q+R G GLGLSI + F L GG V ++S Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNS 267 >gi|239996859|ref|ZP_04717383.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Alteromonas macleodii ATCC 27126] Length = 884 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 32/246 (13%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612 + L K D +N F+ +++ELR+PL I+ +L+T ++ ++ ++Q++Y+ Sbjct: 519 QELEKQDNYRNEFLATLAHELRNPLGPIMSGASILETVDDEKTRKRVTAIINRQAEYMS- 577 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQSIATKMHENNIR 668 L+ND++D++ + G +KL + + + D+L++ V+Q + K H +I Sbjct: 578 ---------KLINDLMDVSRITRGKVKLEFERLKIQDVLSDSLEIVEQQVKAKKH--DIT 626 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + + + D+ RL QIFS I+ NA ++ + ++++ +D + +VK+NG Sbjct: 627 VNCLEEDV--TVYGDKARLSQIFSNIIHNATKYTKESGKIVVEIRKDGVMIVVAVKDNGM 684 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV---TT 783 IPED K VFN F AH + G+G+GL++V + LH G VS+ S EGV +T Sbjct: 685 GIPEDRLKDVFNMFTQIEAHSTHTKGGLGIGLTLVSKLVALHHGEVSVMS--EGVDRGST 742 Query: 784 INCRIP 789 R+P Sbjct: 743 FEVRLP 748 >gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1376 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 17/239 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL E + A+ K+ F+ ++S+E+R+P+ I+GF DLL++ L S +Q QYV+ Sbjct: 868 QALKEATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQS--LVS-EPRQQQYVKS 924 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I+AS LL+L+NDILDL+ ++AG M+L+ I L +L E+ Q K E + I+ Sbjct: 925 IAASGKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIRE 984 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG--DFI 720 I+D + + D RL QI ++ NA+ F+ +G S L A Sbjct: 985 INDNLPKAIMFDEVRLRQILLNMVGNALKFTDEGWVKISVVTNSNTPLNAENPESTISLE 1044 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++ + G I + + +F+ F+ + + R+ G GLGL+I + + GG +S+ S Sbjct: 1045 IAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGSGLGLAITKRLTQMLGGTISLESQ 1103 >gi|254439947|ref|ZP_05053441.1| hypothetical protein OA307_4817 [Octadecabacter antarcticus 307] gi|198255393|gb|EDY79707.1| hypothetical protein OA307_4817 [Octadecabacter antarcticus 307] Length = 533 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 46/313 (14%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE--- 239 L + + + + + + L+W D G ++WAN SY + +E AIG Sbjct: 145 LTATAMEHELETLRSIGEDSPQLIWKHDAEGVLIWANRSYMELSE-----ILHAIGPNDV 199 Query: 240 ----SRKLFKEE---------IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286 R++F + I + + EK +++L+ G + + Sbjct: 200 LPWPPREVFNQTARPVGAAPVIDMHRVDTPDQEKPIWFEITSLKRGTDTIH--------- 250 Query: 287 GEAGIAIDVSKEITVNDQ-------LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339 AID S + D LT T+ L+V + IFD +R L N + V+L Sbjct: 251 ----FAIDASAVVFARDAQRSFVQTLTKTFA---QLSVGLVIFDSDRRLVLFNPALVDLT 303 Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNG 397 + FL P+ L+ LR +PE ++ +W++ + ++ ++ + +TW LPNG Sbjct: 304 LLPTNFLIARPTLFSFLDRLRDNQMIPEPKDYASWRDQMVALESAATEGNYHETWPLPNG 363 Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457 QT V +P G ++FE+++ ++ L K+ + + + ID+L+ VAVF G + Sbjct: 364 QTFRVTGKPHPNGAIAFLFEDISDEISLTRKFRSQIDISAAVIDNLASAVAVFSSSGSLV 423 Query: 458 LSNPAFRSLWKTE 470 L+N A+RSLW T+ Sbjct: 424 LANSAYRSLWGTQ 436 >gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 938 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 11/245 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF N+ + + L + E +A K+ F+ ++S+E+R+PL +IGFTDL+ +KL Sbjct: 522 TFQNIHEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLS 581 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q QY+ + S+ LL ++NDILD + +++G ++L+ + L +L N+ I Sbjct: 582 PV---QEQYLRIANESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIITF 638 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN 716 + ++++ G L ++ AD RL Q+ +L NA+ F+ G + +D+ Sbjct: 639 QAQSKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFTDHGQIELKIKFVGVKDS 698 Query: 717 GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 G F+ F V++ G I D +F F +R G GLGL+I + L G + Sbjct: 699 GHFVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGSKL 758 Query: 773 SISSS 777 + SS Sbjct: 759 QVKSS 763 >gi|90023024|ref|YP_528851.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952624|gb|ABD82639.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 761 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E + + A+ +K +F+ +S+ELR+PL +IIGF+ S + K + I Sbjct: 515 ALEEALQVAKDANSVKTNFLACMSHELRTPLNSIIGFSVRCLKILSPSHDQKLITAITVI 574 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL L+ND+LDLA V+AG M + + I + ++EV ++ + + I IKV + Sbjct: 575 ERNGQHLLGLINDVLDLAKVEAGKMTITKAPIDIAATMDEVVTTLQPLVDDKPIEIKVKT 634 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730 L + +AD+QR QIF + +NA++F+ +G I L+ + +V++ G I Sbjct: 635 P-PLNTILADQQRFKQIFINLGANAINFTREGRVQIDYALETTKGKQALRINVRDTGIGI 693 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ VF RF V + G GLGL++V F+ LHGG + ++S Sbjct: 694 AKEHVAKVFQRFEQVGEQFQPGSLGSGLGLALVHEFVTLHGGRIKVTS 741 >gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 528 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 5/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T A R L + +E L++AD +K F+ +S+ELR+PLT I+G+ +LK + Sbjct: 128 DITGQKDAARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEE---ATP 184 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Q +E I + + L+ D+LD++ ++AG + L+ + L+ ++N Q++ Sbjct: 185 ADLAQGLEVIERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTAD 244 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +IR+ + G + D+ RL QI +L+NA+ F+ + + R + V Sbjct: 245 AKDIRLTSLLADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEVIV 304 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +NG I + VF+RF R+ G+G+GLSI LHGGH+ +SS Sbjct: 305 SDNGQGIAPEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSS 359 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 23/355 (6%) Query: 447 VAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAII 504 V + P+G I+ NP F TE+ + I Y E W + A + Sbjct: 445 VVITDPEGNIEYINPTFTEHTGYTEKEVIGQNPRILKSGLMEDSVYEEF--WKTILAGNV 502 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERAL----TEKN 559 + K G EL + + +I+ N + ++T FV V + + ++ L Sbjct: 503 WHGEFHNKKKNG--ELYWEDAIVSAIV---NQKGVITNFVAVKEDITEKKKLWVDLIASK 557 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E ++D +K +F+ ++S+E+R+P+ I+GF +LLK L +Q++Y+E I+ S Sbjct: 558 EKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKEPHLSG--EEQAEYIELINQSGKR 615 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGK 676 +L L+NDI+D++ ++AG ++ +N LL+ + N+ + +SD + Sbjct: 616 MLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLAANKNLLLSCNNGLSDEE 675 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 D +L QI + ++ N + FS +G V + R FSV ++G IPE M + Sbjct: 676 C-VIETDSAKLTQILTNLVQNGLKFSVEGE-VRVGYIRKEDLLEFSVSDSGIGIPESMKE 733 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S+F RF V N+ G GLGLSI ++++ + GG + + S + +T +P Sbjct: 734 SIFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVESGEGNGSTFIFTLP 788 >gi|229155590|ref|ZP_04283698.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342] gi|228627908|gb|EEK84627.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342] Length = 438 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L +E + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 206 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 264 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 265 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 323 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A + G + VK+ G I Sbjct: 324 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 380 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 381 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 437 >gi|288961674|ref|YP_003451984.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288913954|dbj|BAI75440.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1960 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 18/246 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V A+ AL EK E L + K+ F+ ++S+ELR+PL +++ + LL + +L+ +Q + Sbjct: 1228 VFAKAALEEKAEQLALTSKYKSQFLANMSHELRTPLNSLLILSKLLADNPDTNLSDRQVE 1287 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++ + LL L+NDILDL+ +++G + L +VL DL N V+++ + E + Sbjct: 1288 FARTIHSAGSDLLGLINDILDLSKIESGTVTLEIGEVVLGDLRNHVERTFSQVAQEKKLA 1347 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------- 718 + D L + + D +RL Q+ + +LSNA F+ G + + A G Sbjct: 1348 FTIEMDAALPAGIQTDEKRLSQVLNNLLSNAFKFTETGG-ITFRVAPATGGWSAAHPTLD 1406 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F+V + G IPED + +F F R+ G GLGLSI L GG Sbjct: 1407 AAASVLAFTVIDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGE 1466 Query: 772 VSISSS 777 + ++S+ Sbjct: 1467 IRVAST 1472 >gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 949 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 135/255 (52%), Gaps = 12/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS 601 ++VT+ ER L + KA+++K+ F+ ++S+E+R+P++ +IG + LLKTS Sbjct: 552 LDVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTSA--- 608 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q + ++ I+ S LL ++N+ILD + +++G L L+ + + ++ ++ Sbjct: 609 -DDDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALCSQ 667 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716 + E N+ KV I D D L +I + +NA+ F+ G+ + +L ++D Sbjct: 668 VQEKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAGNVILRASLLNRSKDR 727 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + +F V + G +P + +++F F RR G GLGL+I +S + + GGH+ + Sbjct: 728 LEILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHIWM 787 Query: 775 SSSDEGVTTINCRIP 789 S+ ++ RIP Sbjct: 788 ESTPGEGSSFFVRIP 802 >gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2] gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 476 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622 + ++IK+ F+ +S+ELR+PLT+I G+++ L + G + ++++ ++ IS + L+ Sbjct: 237 RTNQIKDDFISSISHELRTPLTSIKGWSETLNS---GGYDPEETKIGMQIISKETDRLIG 293 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV +ILD + ++ MKL T+ L +LL E+ ++ K I++++ S+ Sbjct: 294 LVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHG 353 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+F I+ NA+ FS + S + L R G+ SV++ G I E+ V +RF Sbjct: 354 DGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRVKGNIEISVQDTGIGISEENLARVRDRF 413 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 H Q G GLGL+I + F+ H G + I S TTI +P+ Sbjct: 414 FQVDH--QNGGTGLGLAISQQFVERHHGQMLIRSELGAGTTITVSLPA 459 >gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 771 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 12/230 (5%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V DILD +++ G ++L+ + L ++N+V ++ + I + V Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494 Query: 672 ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + LG+ + D +RL Q+ S +LSNA F+ +G V + R + +V + G Sbjct: 495 --ECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQG 552 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + VF F A RRG+GLGLSIV LHGG V +S+ Sbjct: 553 ISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 1262 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1005 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1064 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1065 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1122 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1123 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1182 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 1183 VLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1242 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1243 APNEGTLVEITFPSQ 1257 >gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 767 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 3/229 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ ++S+ELR+PL IIGF ++L + G++N +Q + I S LL++V Sbjct: 511 ANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTVNERQKSCITDIHDSGRHLLDIV 570 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N +LD++ ++ G L+ ++ ++ + + + + I I + DR Sbjct: 571 NAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDR 630 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 + Q+ +LSNA+ F+ G + + A + +G F +V + G IP +F F Sbjct: 631 RAFKQVILNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFR 690 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + RR G GLGLSI ++FI+LHGG +S S T++ R+P+ Sbjct: 691 QAENTANRRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLPA 739 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +KN L +A +K+ F+ ++S+ELR+PL I+G T+ L+ G +N +Q + ++ I + Sbjct: 1101 QKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEIFGQINERQRKSLKIIEQA 1160 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL L+NDILD++ +++G ++L+ ++ + L + + + I++ Sbjct: 1161 GNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKKRIQLDFNISSN 1220 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 + D +R+ Q+ +L+NA+ F+ +G V L+ + + + F+VK+ G I + Sbjct: 1221 ILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVKDTGIGIAAENI 1280 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F + +A Q G GLGL++V+ ++LHGG VS++S Sbjct: 1281 PKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTS 1323 >gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1193 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 33/279 (11%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T A+ AL + E+ A+ K+ F+ ++S+E+R+P+ I+GF +LL+ G Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725 Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ +S+ Y+ I++S ILL L+NDILDL+ +D+G +++NY I L L+ E+ Q Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LK 711 + + + + I+D + + D RL QI +L NA+ F+ +G+ I L Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845 Query: 712 AARDNGDFIF------------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 R+ D ++ SV++ G I + +F+ F + + R+ Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGL+I + GG + + S +T P+ Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPN 944 >gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492] Length = 1034 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 133/248 (53%), Gaps = 8/248 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R E AL E +++D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 649 ITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATE---NET 705 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +++ I ++ +LL LV++ILDL+ ++A ++ NY + LN L +V+ ++ ++ + Sbjct: 706 ERKEFISIIETNNQLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL-Q 764 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + ++ + + + + RL Q+ +L NA F+ KG + R + F VK Sbjct: 765 TGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEKGEIMFGYKIRGE-ELYFYVK 823 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TT 783 + G I + K +F RF Q G GLGLSI ++ + G + + S EG +T Sbjct: 824 DTGIGISLENQKKIFERFTKVNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGST 881 Query: 784 INCRIPSK 791 IP K Sbjct: 882 FWFTIPYK 889 >gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] Length = 532 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613 E A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Y +Y I Sbjct: 253 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 310 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LLNL+N+ILDL+ ++AG +LN I L ++ + + + I I + Sbjct: 311 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRATSRGITIHEVF 370 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732 + + D + + Q+ +LSNA+ F+ +G + LKA +G SVK+ GS IPE Sbjct: 371 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 430 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 431 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 476 >gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 892 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 5/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+AL E +A + K+ F+ ++S+E+R+P+ I+G LL+ LN Sbjct: 506 DLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQ---PLN 562 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K +Y++ S+ L ++NDILD + ++AG + L + +L++ ++ + + Sbjct: 563 EKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQAT 622 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + NI +K + D + +V D RL Q+F ++SNA+ F+S+G + D + Sbjct: 623 DKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIKFTSQGGVTVTFRLTDESRICCCI 682 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I E +F RF R G GLGL I +S I L G + ++S Sbjct: 683 SDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSG 742 Query: 782 TTINCRIPSKE 792 + +P K+ Sbjct: 743 SQFYVYLPLKQ 753 >gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 291 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E LR E+K+ F+ ++S+E R+PL +I+ T LL+ G LN++Q + V ++S Sbjct: 44 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +V+D+LDLA ++AG + ++ L DL ++ + + + + V D Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGKTMLVFDD 162 Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ +G + + F V++ G I + Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F FV Q+R G GLGLSI + F L GG V ++S Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNS 267 >gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 786 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 12/233 (5%) Query: 553 RALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + E+L KA D K+ F+ ++S+E+R+P+ ++G +LL ++L +Q + Sbjct: 220 RAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL---TPRQKTF 276 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LL ++NDILD + ++AG + L+ + L + + +V ++ ++ E N+ + Sbjct: 277 TDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLEL 336 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKN 725 V D +L + V D R QI + ++ NA+ F+ KG +I D + V++ Sbjct: 337 IVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNDVVQLRLRVED 396 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IP + ++VF +F RR G GLGL+I ++L G + + S Sbjct: 397 TGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 449 >gi|330816290|ref|YP_004359995.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3] gi|327368683|gb|AEA60039.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3] Length = 779 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 9/238 (3%) Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 +A R+AD +K+ + VS+ELR+PL I G+ ++++ G+L Q Q ++ I Sbjct: 385 RDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPIDGAL---QRQAIDAIDR 441 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S+ L +V DILD +++ G ++L+ + L ++ +V S T + I ++ Sbjct: 442 SARSLSRMVADILDASSLATGKLRLDPMPVDLVRVVGDVAGSFGTTAGHDGITLETHCAL 501 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + D +RL Q+ S +LSNA F+ +G V + RD + +V + G + D Sbjct: 502 EACVVSGDAERLKQMLSNLLSNAFKFTPRGGRVTIGLTRDEARVLLTVTDTGQGVVADFL 561 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790 VF F N+ +RG+GLGLSIV LHGG V ++S+ + TT +P+ Sbjct: 562 PHVFEAFRRAENSPASPKRGLGLGLSIVRHIAELHGGAVRVASAGRDLGTTFEVALPA 619 >gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 1032 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 580 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 581 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 637 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 638 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778 >gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9] Length = 923 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 412 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 471 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 472 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 528 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 529 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 588 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 589 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 648 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 649 IEIDSLPDFGTTVTVALPLRE 669 >gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 546 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L + NE L +A++ K+ + +VS+ELR+PLT ++ +T++L G L +Q + Sbjct: 299 AERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLTPEQRE 358 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I+ SS LL + D+L +A ++AG +L Y + +++ EV + + R Sbjct: 359 CLENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLARKK--R 416 Query: 669 IKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF-SV 723 IK+ + G + +ADR ++ I + ++SNA+ F+S+G V +K + D ++ V Sbjct: 417 IKLCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYMLVKV 476 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G I + +F +F + Q G GLGL++V + LHGG V + S ++ Sbjct: 477 TDTGVGIDPAEQEVIFEKFYRSKKHSQ--GTGLGLTLVRELVQLHGGRVWVESIPGQGSS 534 Query: 784 INCRIPSKE 792 +P KE Sbjct: 535 FYFTLPLKE 543 >gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 730 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 + +++ K+ F+ ++S+ELR+PL +I+ T L G LN+KQ + +E +S SS L + Sbjct: 358 QSSNKAKSYFLSNISHELRTPLNSIVSLTQALLEGTFGDLNAKQHENLEIVSESSKHLQS 417 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILDL+ ++ G M L ++ + D+ + I + N+R + + +L + Sbjct: 418 LINDILDLSKIELGKMTLKFAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEV 477 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +RL QI +L NA+ F+ + V L+ +N +F+V ++G I ++ +F+ Sbjct: 478 DAKRLRQILLNLLVNAVKFTKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFS 537 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F + ++ G GLGL+I F+ LHGG + ++S+ + +T +P Sbjct: 538 PFTQLDDSLSRHYEGTGLGLAIASKFVELHGGGLRVASTPDLGSTFTISLP 588 >gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] Length = 922 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 411 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 470 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 471 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 527 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 528 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 587 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 588 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 647 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 648 IEIDSLPDFGTTVTVALPLRE 668 >gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 989 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 + QT V + D + +AL E +A A K+ F+ ++S+ELR+PL I+G+ Sbjct: 503 SGQTAHVIVIIQD-ISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGY 561 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ L+++Q V I S LL L+NDILD A + AG ++L + L Sbjct: 562 AQILQRDV--RLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGF 619 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L + + +A + + + + ++ L + V D +RL Q+ +L+NA+ F+ +G + Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDRGEVTL 679 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768 + G F V++ G + D +++F F + H + G GLGL+I + + + Sbjct: 680 SVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISQQLVRMM 739 Query: 769 GGHVSISSS 777 GG + ++SS Sbjct: 740 GGEIEVTSS 748 >gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1040 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 26/273 (9%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----RKADEI----------KNSF 572 E ++PL +T+ N+TD E L N L RKA ++ K+ F Sbjct: 460 EIRVVPLGTDKTLNIVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQAQEASKAKSEF 519 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + ++S+E+R+P+ +IG T LL + L +Q +Y I++S+ LL+L+NDILD++ Sbjct: 520 LANISHEIRTPMNGVIGMTGLLLET---DLTPQQHRYAGTIASSAQSLLDLINDILDVSK 576 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIF 691 ++AG + L L +L+++ S A + + N+ + I G D RL QI Sbjct: 577 IEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQIL 636 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV---S 744 I NA+ F+SKG I + D F +++ G I ++ ++F +F + Sbjct: 637 MNIAGNAVKFTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDA 696 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +A R Q G GLGLSI + + L G + + S+ Sbjct: 697 SATR-QYGGTGLGLSIAKDLVELMQGSIGVEST 728 >gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1170 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 1172 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] Length = 1014 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|83943090|ref|ZP_00955550.1| response regulator receiver protein [Sulfitobacter sp. EE-36] gi|83846098|gb|EAP83975.1| response regulator receiver protein [Sulfitobacter sp. EE-36] Length = 685 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 38/382 (9%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESD 495 E ID + EG F R+ + N +R + + PG + + +R + S Sbjct: 302 AEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGATMGELVVNWANRTESLSG 361 Query: 496 GWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 A + R Q L+ + +D+ L+ + P+ T+ + +VT RA+ Sbjct: 362 SKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTEAKTPHGYTVGIWTDVTAEKRAQ-- 419 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK--------LGSLNSKQ 606 EA AD K F+ +VS+ELR+PLT I G ++ S + +L + Sbjct: 420 -----EAAEAADREKTEFLNNVSHELRTPLTVIFGRASFMRHSDKMPQAQRLMSALTADG 474 Query: 607 S-------QYVEY----------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 S +EY I+ SS ++ LV D+LD V G ++L+ + L++ Sbjct: 475 SGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLDE 534 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + V Q + + + DG + VAD+ R+ QI +++NA+ F+S+G + Sbjct: 535 IARTVTQELQPAAEAKGLTLTYAGDGPAAT-VADKVRVKQILYNLITNAIKFTSEGK-IH 592 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 L + +FSV + G+ I E+ VF RF V + Q G+GLGL+I E L Sbjct: 593 LSMLHSADEIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLAEL 652 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG +S+ S +T + +P Sbjct: 653 HGGSLSLESKLGVGSTFSLTLP 674 >gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 912 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 19/288 (6%) Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 + D+R ++QG + + D + I N + F + + AE A T+ + + A+ Sbjct: 345 YKDDRGNVQGVVVVARDITDQKKIETQLNEA--IVFAEMATEI-AEIAKTKAESSTQIAE 401 Query: 567 ---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + K F+ ++S+E+R+P+ I+GFT +L S+L +KQ +Y+ I S L+ L Sbjct: 402 TAVKAKQQFLSNMSHEIRTPMNAIVGFTKVLLKSEL---TAKQKEYLSAIKMSGDALIVL 458 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682 +NDILDLA VDAG M + ++ + TK+ E N+++ V D + V Sbjct: 459 INDILDLAKVDAGKMVFEKIPFKMELSISAMLHLFETKILEKNLKLVVDYDKTIPDVLVG 518 Query: 683 DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D RL QI ++SNA+ F+ KG S +L D+ FS+K+ G I E+ + Sbjct: 519 DPVRLHQIILNLMSNAVKFTGKGKIYVSVRLLSNNDDSASVQFSIKDTGIGISEEKIGKI 578 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F F A G R G GLGL+IV+ + GG + ++S +EG T Sbjct: 579 FENF-QQASSGTSRLYGGTGLGLAIVKQLVESQGGSIHVTSEINEGST 625 >gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1172 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1201 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 559 NEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +E +KADE+ K+ F+ ++S+ELR+PL +I+ + LL + +L Q +Y Sbjct: 514 DEIQKKADELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATLTPDQVEYARV 573 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S LL L+++ILDL+ ++AG MKL+Y + + ++ +E++ E + + Sbjct: 574 IQSSGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAIT 633 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSS 729 + + + DR RL QI +LSNA+ F+S G S I ++ F VK+ G Sbjct: 634 VKPDVPTVIETDRMRLGQILKNLLSNAIKFTSSGQVSLRIERSTSAASTLCFVVKDTGIG 693 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP + VF F +R+ G GLGLSI L GG +++SS Sbjct: 694 IPPEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSS 742 >gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 953 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 10/236 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V A R+ E + A +A+ K+ F+ ++S+E+R+P++ I+G +++ T+ L +Q + Sbjct: 427 VEANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMVTT---GLTEEQRE 483 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +++ I + LL+++NDILD++ ++AG M+L L +S + N + Sbjct: 484 HMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSVRSFGPQAELNGLV 543 Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSV 723 + ++D D RL Q+ ++ NAM F+ +G ++ AR G F V Sbjct: 544 FRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVVARKEGRVCLQFKV 603 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ++ G IPED +VF+ F ++ R + +G GLGL+I +N+ GG + + S+ Sbjct: 604 RDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMMGGEIGVESA 659 >gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 1170 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 718 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 15/233 (6%) Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 TE EAL KA+ K+ F+ ++S+E+R+P+ +IG LL + L + Q Y+E Sbjct: 200 TELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPL---DEVQQGYMES 256 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + LL ++N+ILD++ V+AG++ L L L+ Q + + +R+ + Sbjct: 257 LSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRSLQPFVLRGQKKGVRVHLE 316 Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 +D L V D RL Q+ + +L NA+ F+ +GS + A +G+ FSV + G Sbjct: 317 ADSGLPELMVGDPVRLRQVLANLLGNALKFTQQGSITLTAALTGSGENRVALKFSVADTG 376 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777 I + + +F +F S A R G GLGLSI +S + L GG +S+ S+ Sbjct: 377 IGIAAEAMEVIFEKF-SQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQST 428 >gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 1257 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1000 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1059 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1060 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1117 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1118 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1177 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 1178 VLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1237 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1238 APNEGTLVEITFPSQ 1252 >gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 925 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT+LL+ S+L + +Q Y+ I S+ Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLSTIQKSA 329 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L L DL+ + +A HE + + ++ Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIP 731 D QRL QI + ++ NA+ F ++G TV ++A + D SV++ G + Sbjct: 390 PVQLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLS 448 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ED +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 EDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496 >gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 848 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 145/299 (48%), Gaps = 16/299 (5%) Query: 501 AAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALT 556 A + SF R ++ G + S+ EY + N A ++F + D R + Sbjct: 548 AVWMASFLTRRITAVVGGIHRFSEQETEYRLPVQGNDEMASLAISFNQMAD--RVAESFV 605 Query: 557 EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 +EA ++A+E +K+ F+ ++S+ELR+PL IIGF++L++ + + + + + I Sbjct: 606 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDE---AADDETRENADII 662 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 SS LL LVN ILD+A ++AG M L+ + L L+ E + I + Sbjct: 663 EKSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRV 722 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G + + AD RL QI +LSNA+ F+ G V L +F V + G+ IPE Sbjct: 723 AGDCPATIQADPLRLRQILHNLLSNAVKFTETGE-VALSVDLQPDHLVFKVSDTGAGIPE 781 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 M ++F +F V + G GLGL++ + L GG + + S+ TT + +P Sbjct: 782 AMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLP 840 >gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 91] Length = 927 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 14] Length = 927 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 1170 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1043 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 136/266 (51%), Gaps = 13/266 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++ +++T+ + E AL ++ E L +A+ +K+ F+ +S+ELR+PL ++G+T LL++ Sbjct: 627 ESVAFILDLTERKQLEAALHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRS 686 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K K ++ +E I ++ L L+ D+LD++ + G ++LN + L ++ + Sbjct: 687 RKFD--EEKTARALETIDRNTKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIE 744 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ +I+I + D ++ D RL Q+ +LSNA+ F+ G V + R Sbjct: 745 TVIPAAQAKSIQIIPLLDERIERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVG 804 Query: 717 ----GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767 G+F V + G I + VF+RF S A R G+GLGL+IV + L Sbjct: 805 SELEGNFCAEIEVTDTGQGINPEFLPHVFDRF-SQADSTTTRSYSGLGLGLAIVRHLVEL 863 Query: 768 HGGHVSISSSDEGV-TTINCRIPSKE 792 HGG V S G + R+P E Sbjct: 864 HGGTVKADSQGSGKGSAFTVRLPLPE 889 >gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2476 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA +L EK E L + K+ F+ ++S+ELR+PL +++ LL +K G+L++KQ +Y Sbjct: 1753 RARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEY 1812 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I AS LL+L+N+ILDL+ V+AG M++ IVL +L +++S + + Sbjct: 1813 ANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLDF 1872 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720 V + G D QRL Q+ +LSNA F+ +GS + +K A F Sbjct: 1873 AVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEPGTHFDHEVLRRS 1932 Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G I D + +F F R+ G GLGLSI L GG + Sbjct: 1933 RYVLGFSVVDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIQ 1992 Query: 774 ISSSDEGVTTINCRIP 789 ++S +T +P Sbjct: 1993 VASEPGRGSTFTLYLP 2008 >gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 927 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 377 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622 +A+E K++F+ ++S+ELR+PL IIGF+D+++ + GS+ NS+ Y + I+ S LL+ Sbjct: 126 RANEAKSNFLANMSHELRTPLNAIIGFSDIIRFQRFGSVGNSRYQDYAKDINESGIHLLS 185 Query: 623 LVNDILDLATVDAGIMKL----NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 ++NDILDLA +DAG + +S D + +S+A + I + + Sbjct: 186 IINDILDLAKIDAGHGTMEQEAEFSVRSAIDCAERMVRSLAER---QEISLSTAAAETSA 242 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737 V + + Q+ +LSNA+ F+ +G +V + A R NG+ + S+ + G + D K Sbjct: 243 YLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEHRPNGNLVVSISDTGIGMSPDEVKV 302 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F + R+ G GLGL + ++ +++HGG + + S TT+ PS Sbjct: 303 ALTPFGQSGSALSRKHPGTGLGLPLAKAMMDMHGGRLMVRSMVGKGTTVTLVFPS 357 >gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1989 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 1235 QARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNIENNLTPKQVEY 1294 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S + LL L+NDILDLA +++G M + + L DL +++++S H+ + Sbjct: 1295 AATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQIERSFRQIAHDKGLEF 1354 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR----DN-----G 717 +I D +L S + D +RL Q+ +LSNA F++KG S + A R DN Sbjct: 1355 SIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAKGQVSLSLEPAIRGWSLDNEILNSA 1414 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + + F+V + G I + K +F F R+ G GLGLSI L GG ++ Sbjct: 1415 ELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLGLSISREIARLLGGEIT 1474 Query: 774 ISS 776 + S Sbjct: 1475 VIS 1477 >gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 594 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +RA+R+L +A +AD +K+ + VS+ELR+PL I G+ ++L+ ++ +L Sbjct: 241 LRAQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 297 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q ++ I S+ L +V DILD +++ G ++++ + + L ++ + T Sbjct: 298 QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 357 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ + ++SNA+ F+ G V + +RD+ + V + Sbjct: 358 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 417 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G IP VF+ F ++ RRG+GLGLSIV LHGG V + S+ Sbjct: 418 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGQVRVESA 471 >gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 614 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E AL +AD K F+ +S+ELR+PL IIGF++++ SL+ Sbjct: 325 DITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGFSEMMVQEDALSLD 384 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y + I+ S LL++VN ILD++ +++G ++ ++L +A K Sbjct: 385 AARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPREVLLNSSNLLALKA 444 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +N I + L D + QI ++SNA+ F+ +G V + A + + Sbjct: 445 RDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVTISARVEGSRMVLR 504 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V +NG I ++ K + + F QRR G GLGLSIV+S + LH G + + S E Sbjct: 505 VMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVALHRGEIDVQSKVEE 564 Query: 781 VTTINCRIP 789 TT+ +P Sbjct: 565 GTTVTVMLP 573 >gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1027 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 129/239 (53%), Gaps = 7/239 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F+++T+ ++A++ L E +A +A + K+ F+ +S+E+R+P+ +IG +D+L + Sbjct: 614 FLDITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAVIGLSDVLAET---P 670 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN +Q YV + +S LL+L+N ILDL+ +++G +L L+D+ + V + + Sbjct: 671 LNPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDLSDMAHGVCSVLRVQ 730 Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + D L F V D RL QI ++ NA+ F+ +G + ARD + Sbjct: 731 AEQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQGFVKVSVQARDQQRTL 790 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + ++G I + +F +F RR G GLGL+I + + L GGH+ + S Sbjct: 791 WFGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQLVGLMGGHIGVES 849 >gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 403 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 165/342 (48%), Gaps = 15/342 (4%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 + H + + V D R++ SNPA R + + + PGT + + N + Sbjct: 45 MTHSPDALLVLDKDFRLRESNPAAREMLRLPVGK--PGTLWKCREVLRCKNLNRMELCGT 102 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 + + + + LQ ELL + E T +T +++ A AL + + Sbjct: 103 SSCPLARVLQQDEPLQNE-ELLVGAKEEI----FCEVSTSVTPIHIAAEPYAVWALRDLS 157 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 AL+ A++++++FV VS+ELR+PL ++ GF +LL +G LN +Q Y+ Y Sbjct: 158 -ALKVANQVRSNFVSMVSHELRTPLNSVHGFIELLWQGHMGELNDEQRLYLGYAQEGVQQ 216 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKL 677 L+++V DIL + D G + + L +L+ V QS+ + + + ++++ + L Sbjct: 217 LISIVEDILFMTRSDLGQFETKQQGVQLLELVRLVTQSLQPQAVKAGVALVLEIVPETPL 276 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736 D QR+ Q+ + ++SNA+ ++ G +V + A+ + F + SV + G I + Sbjct: 277 --LYVDPQRIKQVLNNLISNAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRP 334 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + H Q + G GLGLSI + HGG +S + Sbjct: 335 HIFERFYQSNHSQQSKMGGYGLGLSIARLIVEQHGGTISFDT 376 >gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 807 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 29/273 (10%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---------------------IKNSFVQHVSYE 579 T + ++ +AE L ++NE L +A+ K+ F+ H+S+E Sbjct: 253 TCLEISRRKQAEAELEQRNEELTRANHQLAASNRRAAVLAAEAEAANRAKSDFLAHMSHE 312 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+P+ +IG T LL G L+ +Q Y I AS LL ++NDILDLA ++AG ++ Sbjct: 313 IRTPMNGVIGMTALLLA---GDLDEQQRHYAGVIKASGEALLRIINDILDLAKIEAGRLE 369 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698 L L LL E+ + + + +K L + D RL QI +L NA Sbjct: 370 LVSRDFSLPALLAEIFTLLQPEAAAKGLALKEQVAADLPPRLRGDDVRLRQILLNLLGNA 429 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 + F+ G + + + FSV++ G +P ++ + +F F +RR G GL Sbjct: 430 IKFTDHGEVEL--SVSGQHEICFSVRDTGPGVPPELQQQIFAPFEQAGAADRRRPAGTGL 487 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GL+I L G + + S+ T +C +P Sbjct: 488 GLAICRRLAQLMEGSLRVESTPGAGATFHCVLP 520 >gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 870 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + ++E Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + +LL L+NDILDL+ +++G M ++ L L+ V S M + Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + V D RL Q+ + +++NA+ F+++GS + G V++ G I Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + +F RF Q G GLGLSI ++ + G ++++S + T R+P Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866 >gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] Length = 988 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 477 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 536 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 537 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 593 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 594 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 653 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 714 IEIDSLPDFGTTVTVALPLRE 734 >gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 1149 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+ +Q ++ Sbjct: 462 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVKF 521 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ T + L+ ++ + Sbjct: 522 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 581 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V + ++ + DRQRL QI +LSNA+ F+ +G + + + +F+V++ G Sbjct: 582 EVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTERGQVSMNVSFQAGSGIVFAVRDTGI 641 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +++F F RR G GLGLSI +L GG +++ SS + + Sbjct: 642 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSL 701 Query: 787 RIPSK 791 +P + Sbjct: 702 ILPER 706 >gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] Length = 652 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 138/249 (55%), Gaps = 11/249 (4%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + M ++ D V+ L E + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 259 IAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 318 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++++Y+ I +S +LL L+NDILDL+ +++G ++N+ + + Sbjct: 319 FSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTG 375 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 L++EV++ KM + IR+ V+ + + DR R+ Q+ LSNA+ + +G+ T+ Sbjct: 376 LIDEVEKVHRLKM-KTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEGAITL 434 Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 L+ G+++ V + G I ++ +FNRF Q G GLGL I +S + Sbjct: 435 GLEVC---GEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ--GTGLGLPICQSIVER 489 Query: 768 HGGHVSISS 776 GG +S+ S Sbjct: 490 LGGKISVES 498 >gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112] Length = 927 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1170 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFKPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 1032 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 580 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 581 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 637 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 638 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778 >gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 834 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 125/246 (50%), Gaps = 12/246 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +A+ K+ F+ +S+ELR+PL I+GF+ L+ + +++++Q ++ I Sbjct: 356 ALEAARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQ--AISTQQQNTLQII 413 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + S LL L+ND+LD++ ++AG LN + L+ LL + K +++ + Sbjct: 414 NRSGEHLLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALKL 473 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD----FIFSVKNNG 727 D L F+ D +L Q+ ++ NA+ F+ G I A GD F+V+++G Sbjct: 474 DDHLPQFIHGDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGELSLTFAVEDSG 533 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT---T 783 I D + +F+ F+ ++G GLGL+I F+ L G +S+ S G T Sbjct: 534 PGIAPDEVERIFDPFIQAKSSQAQQGTGLGLAISAQFVRLMKGDISVCSKLSRGSIFRFT 593 Query: 784 INCRIP 789 I C+ P Sbjct: 594 IGCQTP 599 >gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 653 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 4/234 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST 618 +A ++ K+ F+ VS+ELR+PL IIGF+D+L G S +Q +YV I S Sbjct: 382 DAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLIRQSGQ 441 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL++VN +LD++ ++AG +L L + ++ + + ++R+ V + Sbjct: 442 HLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRPGCRDE 501 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 ADR+ QI +LSNA+ F+ G V L++ R FSV + G I E + + Sbjct: 502 EITADRRACHQILLNLLSNALKFTEVG-VVTLESRRVGAMVEFSVSDTGIGIAESDIERL 560 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 FV + RR G GLGLS+V+ LHGG ++I S T + R+P+ Sbjct: 561 GRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLPA 614 >gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 782 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 16/247 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ +TE+ L A ++ F+ +S+E+R+PL IIG D+LK + L + +Q + Sbjct: 383 EQRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKGTPL---DDEQRHNLN 439 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRI 669 I S LLNL+NDILD + ++AG M + ++ L +L+NE K +H N + + Sbjct: 440 VIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQHKAHVHSNTLTL 499 Query: 670 KV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF-IFSVK 724 ++ + + LG D RL QI ++SNA+ F+ G+ TV ++ DN D+ F V Sbjct: 500 EIAPHVGERCLG----DPVRLRQILVNLISNAVKFTDNGTITVRVQRDPDNADYAFFEVH 555 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G I E+ + +F+ F RR G GLGL+I + + GG + + S + + Sbjct: 556 DSGIGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSQPKQGS 615 Query: 783 TINCRIP 789 R+P Sbjct: 616 RFWFRLP 622 >gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 743 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 9/251 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD ERAL++ + A+ K+ F+ S+E+R+PL IIG LL + +L Sbjct: 211 DVTDRTETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDT---TLT 267 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y + + S L+ L+ ++LD + ++AG + L L+ L+ E+ + +A + Sbjct: 268 PEQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPRAQ 327 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720 + I D +L V D RL Q+ + NA+ F++ G ++ R N + Sbjct: 328 AKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEPGIRPN-EIS 386 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G I + + +F F R R G GLGL+I E + GG ++++S Sbjct: 387 FLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLASEP 446 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 447 GKGSTFEVAVP 457 >gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] Length = 1014 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] Length = 1035 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 524 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 583 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 584 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 640 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 641 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 700 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 701 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 760 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 761 IEIDSLPDFGTTVTVALPLRE 781 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 12/261 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +L V+VT+ +A+R + KA + K+ F+ ++S+E+R+P+ I+GF ++L Sbjct: 509 VLLMVVDVTEVAKAKRQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQ 568 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L+ +Q + V+ I L++L+NDILDL+ +++G + + ++ L L++E Sbjct: 569 E---LSPQQQESVKIIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNV 625 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------L 710 I +K E N+ +K+ + L D R+ Q+ ++SNA F+ +G I + Sbjct: 626 IESKFLEQNVEMKIDIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQGYVKISVAEESI 685 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 A F +++ G IP++ K +F+ F R+ G GLGL+I +S L Sbjct: 686 SGADHQIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLM 745 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG +++ S + + IP Sbjct: 746 GGEINVESQVNKGSIFSFYIP 766 >gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 639 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++ D +R + EK EA K ++ K+ F+ +S+E+R+P+ +IG TDL+ ++ Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q YV+ I S T LLN++NDILD + +++G +L T L L+E I K Sbjct: 295 LDEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILPK 354 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718 E NI + ++ V D +L Q+ +LSNA+ F+ G+ I ++ G+ Sbjct: 355 ALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCLNHEGNP 414 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 FSV + G +PE+ +F F H R+ G GLGL+I + + L GG + Sbjct: 415 PLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDI 472 >gi|228985104|ref|ZP_04145271.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774591|gb|EEM22990.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 444 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L +E + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A + G + VK+ G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei B7210] Length = 988 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 477 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 536 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 537 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 593 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 594 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 653 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 714 IEIDSLPDFGTTVTVALPLRE 734 >gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 845 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 7/242 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++TD VR L E E A+ K+ F+ ++S+E+R+PL I+GFTDLL + Sbjct: 427 TQIDITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTDLL-LYDIE 485 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S + + +Y+E + +S LL L+N+ILDL+ +++G + + +L +V + Sbjct: 486 STEADRREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQILTDVISVLRP 545 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 K E I+I+ D + + V D RL Q+ I+ NA+ F+ G I L+A Sbjct: 546 KFEEKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQTGEVRIVARLEAEATR 605 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 IF V + G IP+ + +F F RR G GLGL+I + L GG + Sbjct: 606 SRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHA 665 Query: 775 SS 776 S Sbjct: 666 ES 667 >gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 503 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623 A++ K+ F+ VS+ELR+PL I+GF+D+L G N +Q +YV + S LL++ Sbjct: 228 ANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSV 287 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VN +LD++ ++AG +L ++ + + +A + + + LG VAD Sbjct: 288 VNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRDLGEVVAD 347 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 ++ + QI ++ NA+ F+ G V + AA +G +V + G IP D + FV Sbjct: 348 QRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTVSDTGIGIPADKLALLGQPFV 407 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + RR G GLGLS+V+ + LHGG+ +I+S T I I + Sbjct: 408 QIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEIAA 456 >gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 779 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 12/233 (5%) Query: 553 RALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA + E+L KA D K+ F+ ++S+E+R+P+ ++G +LL ++L ++Q + Sbjct: 215 RAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL---TARQKTF 271 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LL ++NDILD + ++AG + L+ + L + + +V ++ ++ E N+ + Sbjct: 272 TDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLEL 331 Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG--DFIFSVKN 725 V D +L ++ V D R QI + ++ NA+ F+ KG +I + NG V++ Sbjct: 332 IVRVDPRLPTYVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNGVVQLKLRVED 391 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IP + ++VF +F RR G GLGL+I ++L G + + S Sbjct: 392 TGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 444 >gi|47569834|ref|ZP_00240503.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47553480|gb|EAL11862.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 453 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L +E + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A + G + VK+ G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 846 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 11/250 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L+ EA A+ K++F+ +S+ELR+P+ ++G DLL + G L +Q Sbjct: 414 RTAQDLSIAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADLLLS---GPLTQEQRDG 470 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I S LL ++NDILDL+ ++AG ++L +L V + + E + + Sbjct: 471 VTTIRESGECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVL 530 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSV 723 +G + ++D RL QI ++ NA+ F+ +G + AAR D + +F+V Sbjct: 531 TKSEEGHIPQRIMSDPTRLRQILFNLVGNAIKFTPQGEVSVSLAARACDDPDTAELVFTV 590 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G IPE M +F RF R G GLGL+I L G + + S++ Sbjct: 591 RDTGIGIPEAMLPRLFTRFQQADSSISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKG 650 Query: 782 TTINCRIPSK 791 + R+P + Sbjct: 651 SCFTVRLPVR 660 >gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] Length = 813 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 445 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 482 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 483 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 542 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 543 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 602 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 603 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 662 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 663 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 722 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 723 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 782 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 783 EANRAQFAIDSNPGQGTVVEIVFPP 807 >gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 788 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 139/270 (51%), Gaps = 5/270 (1%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 D L ++I L Q L + + A++ +KN A A+ K+ F+ ++S+ELR+ Sbjct: 492 DLRLRATVIDLKRTQATLERQALKLADLAQKYADQKNRA-EDANRAKSKFLANMSHELRT 550 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 PL IIGF++++ G+L SK+ S+Y I S LL ++ND+LD++ ++AG M L+ Sbjct: 551 PLNAIIGFSEIMSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRMNLD 610 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 L +L+E + ++ + + ++ + ++ + S VADR+ + QI +LSNA+ F Sbjct: 611 MEAFDLTGVLDESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVKQILVNLLSNAIKF 669 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 + G ++ ++ ++ + G I + + F V + G GLGL+ Sbjct: 670 TPDGGRIMARSKIFENFITLTIADTGIGIASHALRKLGKPFEQVESQLTKTHAGSGLGLA 729 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 I +S +NLH G + + S T + +P Sbjct: 730 IAKSLVNLHNGSMKLRSKPGVGTVVRVTLP 759 >gi|186682599|ref|YP_001865795.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465051|gb|ACC80852.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 740 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 130/238 (54%), Gaps = 4/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK ++L+KA+E+K F+ ++S+E R+PL +I+ + +L G L ++Q + V +I Sbjct: 203 LDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFIQ 262 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673 +++ L LVND+LDLA V+AG +++ S+ ++DL ++ + + + +++ + + Sbjct: 263 KAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEE 322 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G +D ++ QI +SNA+ F+ +G + R + IFSV + G I Sbjct: 323 PEGIGQIYSDEGKVAQILRNFISNALKFTEQGEVRVTSVQRGH-TVIFSVSDTGIGIATA 381 Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F FV ++ + Q +G GLGL + L GG +S++S +T IP Sbjct: 382 DRERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVTSKLGEGSTFTASIP 439 >gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 919 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 15/255 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT + AE L + + ++ A K+ F+ ++ +E+R+PL ++G + L LKT L Sbjct: 415 DVTANREAEE-LRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE----L 469 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + KQ Y+E I +SS LLN++NDILD + ++AG ++L + + L ++L + +K Sbjct: 470 DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQSKA 529 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 E I +V ++ V D RL Q+ + +++NA+ F+ KG V+ +K R + + Sbjct: 530 QEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEEEV 589 Query: 721 ---FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V++ G I PE M K +F F RR G GLGLSI + L GG + + Sbjct: 590 VVHFCVQDTGIGIAPEQMGK-IFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQV 648 Query: 775 SSSDEGVTTINCRIP 789 S ++ + +P Sbjct: 649 ESVPGSGSSFSFTVP 663 >gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 425 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618 + ++K D++KN F+ +S+ELR+PLT+I G+++ L + + + ++++ + IS + Sbjct: 195 DEIQKNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQ--DPEETRLGINIISKETD 252 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L+ LV D+LD + + +G +K++ + LN L+ E+ IR++V ++ + Sbjct: 253 RLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPI 312 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + D R+ QI + NAM F+ +G + + ++ + + +V++ G IP ++ K V Sbjct: 313 HIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEILKHV 372 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F R+G GLGLSI + L GG ++I S TTI R P Sbjct: 373 TEKFFKGT---SRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 420 >gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis] Length = 967 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 12/236 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E L + EA A+ K+ F+ +S+E+R+P+ IIG +DLL + +L KQS+Y Sbjct: 308 RIEAELEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWET---TLTPKQSEY 364 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ + LL ++NDILDL+ V+AG + + + L + + + + +A + HE + + Sbjct: 365 VKVFRNAGENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFRAHEKGLEL 424 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSV 723 +++ SF+ D RL QI + ++ NA+ F+ G ++L R+ G +F V Sbjct: 425 NCHLAEDIPTSFIGDPVRLHQILTNLIGNAIKFTRTGE-ILLTGKRNKLPGKKGMLLFLV 483 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G +PE+ +FN F V ++ Q G GLGL+I + + L G + + S+ Sbjct: 484 SDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWVEST 539 >gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586] gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586] Length = 927 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L D+L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 927 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 533 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673 >gi|251795760|ref|YP_003010491.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247543386|gb|ACT00405.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 459 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R RA++ NE L ++D K FV +VS+E++SPL +I G+ D L + + Sbjct: 221 ARHFRAMS--NE-LERSDRSKKEFVANVSHEIQSPLASIQGYADSLVHQDIND-AERIRH 276 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I + L L +L L+T+D +L L + Q + ++ E I Sbjct: 277 YASIIGQETRHLAALSRQLLLLSTLDHSGYSPGKQPFLLKPQLRQAVQLLEWQLTEKEIA 336 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I+V GKL + D L+Q+++ +LSNA+ G ++ + A +++G I +V++ G Sbjct: 337 IRVAVPGKLRIY-GDEVLLMQVWTNLLSNAVKHIPGGRSIHVSAEQEDGACIVTVRDTGD 395 Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPED +++RF ++ R +R G GLGLSIV+ + LHGG + S E TT Sbjct: 396 GIPEDQLPYIYDRFYRGDSARDRRSGSTGLGLSIVQRIVQLHGGTIEADSRFERGTTFRV 455 Query: 787 RIP 789 RIP Sbjct: 456 RIP 458 >gi|120611637|ref|YP_971315.1| histidine kinase [Acidovorax citrulli AAC00-1] gi|120590101|gb|ABM33541.1| histidine kinase [Acidovorax citrulli AAC00-1] Length = 298 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LRKA E+K+ F+ ++S+E R+P+++I LL G LN++QS+ V +I Sbjct: 48 LDAQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQ 107 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A++ ++V+D+LDLA ++AG + ++ + + DL ++ ++ + Sbjct: 108 ATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPDLNLVFEEP 167 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SNA+ F+ +G + A D FSV + G I + Sbjct: 168 RNLPPLFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGDRVRFSVADTGIGIAPEF 227 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG---VTTINCRI 788 SVF F V + + + RG GLGL++ L GG V + S EG T+ R+ Sbjct: 228 HASVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLPVRL 287 Query: 789 P 789 P Sbjct: 288 P 288 >gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19] Length = 1140 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 10/241 (4%) Query: 558 KNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 K+E RKA E+ K+ F+ ++S+ELR+PL + + LL + G+L +Q ++ + Sbjct: 451 KDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSLILAKLLSDNSEGNLTEEQVEFAQ 510 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S LL L+NDILDL+ ++AG M+++ ++ L L +++++ ++ +++ Sbjct: 511 TIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSLKRLASDMERVFTPIANQKRLKMTA 570 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +G + DRQRL Q+ +LSNA F+ G V L +D +F+VK+ G I Sbjct: 571 RLGEGVPETVTTDRQRLEQVLKNLLSNACKFTEHGH-VELAILKDGDRIVFAVKDTGIGI 629 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + VF F R+ G GLGLSI L GG++S+ S + +T + I Sbjct: 630 SAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRELSRLLGGNLSVISQVDRGSTFSLSI 689 Query: 789 P 789 P Sbjct: 690 P 690 >gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1100 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 17/263 (6%) Query: 532 PLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 P N ++ V T V ER L + E A+ K+ F+ ++S+E+R+PL Sbjct: 683 PSENDGKLMGIVAATIRVEEERKISAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNG 742 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I G L+ +KL + +Q YV+ S LL ++ND+LD + ++AG++ + + Sbjct: 743 IFGMLQLVGGTKL---DDEQRDYVDTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLD 799 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705 + ++ +V ++ + + E + + V +D + + +D R+ QI ++ NA+ F+ G Sbjct: 800 IRHVVADVLENFSVQAAEKQLVMAVETDASVPPLILSDEARIRQILFNLVGNAVKFTPSG 859 Query: 706 STVILKAAR--DNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 + + D D SV + G IPE+M SVF+ F V +H + G GLG Sbjct: 860 RITVESWVQRADTTDQTMRLFLSVSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLG 919 Query: 758 LSIVESFINLHGGHVSISSSDEG 780 L IV+ ++L GG + + S EG Sbjct: 920 LGIVKRLVDLMGGEIYVESDGEG 942 >gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] Length = 1032 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS- 579 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 580 --PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 637 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 638 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778 >gi|94969439|ref|YP_591487.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551489|gb|ABF41413.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 603 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 2/237 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ L++ E+K F+ ++S+E R+PL +II + LL G L S+Q + V YI Sbjct: 209 LDERAGFLQRTSELKTRFLSNMSHEFRTPLNSIISLSQLLLDRVDGDLGSEQEKQVTYIR 268 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL LVND+LDLA ++AG + + + +N L ++ + + + + Sbjct: 269 RSADTLLELVNDLLDLAKIEAGKVTVYPNEFRVNALFGALRGMLRPLLTNPEVSLTFEDA 328 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 ++G D ++ QI +SNA+ F+ G + + IFSV+++G I + Sbjct: 329 PEIGVLWTDESKVSQILRNFISNALKFTQGGEVAVTARLGQHDTVIFSVRDSGIGIAKSD 388 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF F + NA + + +G GLGL + + F L GG VS+ S + + IP Sbjct: 389 QVRVFEEFTQIENALQRRNKGTGLGLPLTKKFAELLGGSVSLESETGKGSVFSAIIP 445 >gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1155 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+ +Q ++ Sbjct: 468 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVKF 527 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ T + L+ ++ + Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 587 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V + ++ + DRQRL QI +LSNA+ F+ +G + + + +F+V++ G Sbjct: 588 EVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQAGSGIVFAVRDTGI 647 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +++F F RR G GLGLSI +L GG +++ SS + + Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVESSPGQGSVFSL 707 Query: 787 RIPSK 791 +P + Sbjct: 708 ILPER 712 >gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1310 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 14/250 (5%) Query: 535 NAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 A M D+ R E AL + EA A + K+ F+ +S+E+R+P+ I+G T+L Sbjct: 597 QAADMCALAEGLDAAREEADALRARAEA---ATQAKSEFLAAMSHEIRTPMNGIMGMTEL 653 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + L +Q Q+ + I +SS LL ++NDILD++ ++AG + + DL+ Sbjct: 654 LFDTPL---TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDPADLVEG 710 Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V + + + HE I I D L + + D R+ QI ++ NA+ F+ +GS + Sbjct: 711 VVELLTPRAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGSVAVELE 770 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 AR+ D +V + G IP + ++FN+F V + + G GLGL+I Sbjct: 771 AREATDAHLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSE 830 Query: 767 LHGGHVSISS 776 L GG +++ S Sbjct: 831 LMGGSIAVES 840 >gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 470 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 4/233 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + ++ F +S+EL++P++ ++G++++LK KL ++ QY+ + +T Sbjct: 229 QELKRHHDTRSEFFASISHELKTPVSYLMGYSEVLK-EKLYQTEEEKEQYLSILEHEATR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L++D+ DL+ ++ G +N I L +L + + + K E ++ V D L Sbjct: 288 LNYLISDLFDLSKMEEGKFDINKEWIDLTELADNLDMKYSLKAKEKDLLFTVKVDENLSL 347 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F D +R+ Q+F+ +L NAM ++ G DN I +K+ GS IP D +F Sbjct: 348 FYGDGKRIEQVFTNLLDNAMRHTTNGEVTCEFRQGDNQINII-IKDTGSGIPADELPFIF 406 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +RF V + + G GLGL+IV+ + LHGG + I+S + T P+ Sbjct: 407 DRFYRVEKSRSREFGGTGLGLAIVKMLVKLHGGTIDITSKENEGTQFTLSFPN 459 >gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 514 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T E L E A ++ E K F+ +VS+ELR+PL IIG +++++ G Sbjct: 240 FRDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGG 299 Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + N K +Y I+ S LL+++N ILD + ++ + L+ + + +L++ ++++ Sbjct: 300 IGNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQR 359 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDF 719 + E + ++ + G L VADR+ + Q+ +LSNA+ + G + L A A + G+ Sbjct: 360 LLDEGGLTCELQAKGPL-VLVADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGEL 418 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + +V+++G IP + V F +S + +G G GLGL+I + I HGG +SI Sbjct: 419 VLTVRDSGEGIPRERLALVTEPFNLDEDISVSRQG---GTGLGLAITKGLIKRHGGAMSI 475 Query: 775 SSSDEGVTTINCRIPSK 791 +S TT+ P++ Sbjct: 476 NSRVGEGTTVRLVFPAE 492 >gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 1014 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 876 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 16/269 (5%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592 LT NV E+ + + E LR A D K+ F+ +S+ELR+PL IIGF+ Sbjct: 593 LTIENVQLYNDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFST 652 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L L Q + ++ I+ + LL+L+N++LDLA ++AG + L S + L ++ + Sbjct: 653 VLLDDTDQPLTPTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITS 712 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 EV ++ T + + ++ L AD RL QI +LSNA+ F+ +G+ + Sbjct: 713 EVCDTVQTLLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTERGTITVSAR 772 Query: 713 ARDN-------GDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763 D G ++ SV + G IP + +FN FV + R + G GLGL+I Sbjct: 773 VHDEVNEDGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQIHGRRSRLSGTGLGLAITRK 832 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792 + GG + + S+ +T IP + Sbjct: 833 LVLAQGGRIWVDSTPGIGSTFTFTIPVAQ 861 >gi|300773123|ref|ZP_07082992.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300759294|gb|EFK56121.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 1198 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 9/247 (3%) Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L EK E L + + K+ F+ ++S+ELR+PL +I+ + LL + +LN Q + Sbjct: 506 AERNLEIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENTDDNLNEDQIE 565 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I +S T LL+L+++ILDL+ ++AG M+L Y + L+D+ E+ A + E + Sbjct: 566 SAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVKLSDVTQELNSLFAPIVKEKALD 625 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKN 725 + ++ L S + DR RL Q+ +LSNA+ F+SKGS I + + + +F+VK+ Sbjct: 626 LNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKD 685 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I E+ K +F F A RR G GLGLSI L GG + + S + + Sbjct: 686 TGIGIAEEKQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGS 744 Query: 783 TINCRIP 789 + IP Sbjct: 745 IFSLIIP 751 >gi|88799664|ref|ZP_01115239.1| sensor protein LuxQ [Reinekea sp. MED297] gi|88777558|gb|EAR08758.1| sensor protein LuxQ [Reinekea sp. MED297] Length = 770 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-E 611 R L + R E K++ + VS+E+R+P+ IIG + LL+ L+ K++ ++ + Sbjct: 392 RELFNSRKQARAESEAKSNLIAQVSHEIRTPMNGIIGTSQLLE----AHLHGKEAHHLND 447 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S T LL ++ND+LDL+ ++ G ++L + L L+ +V Q + +++ + ++ ++ Sbjct: 448 VIFHSGTTLLTIINDLLDLSRLETGRIRLRPEPVDLRKLMGQVFQILNSQIKQKKLQYEL 507 Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +V D RL Q+ I+ NA+ ++ +G V + A + + + G I Sbjct: 508 TVSDHVPDWVELDPVRLRQVLLNIVGNAIKYTDQGQ-VRMTADYRHPSLSIQIDDTGRGI 566 Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE KS+F +V + R+G GLGL I +S ++L GH+S+ S++ TT+ + Sbjct: 567 PETHLKSLFQPYVQVRQDAEEERKGTGLGLHIAQSLVDLMEGHLSLESTEGQGTTVQLLV 626 Query: 789 PSK 791 P++ Sbjct: 627 PTR 629 >gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B] gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B] Length = 566 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++L +Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL---EEEQRQYLSN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ S +L ++ND+LD + ++AG+M++ + +L + A K E I + Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG V D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWLNGTAYFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422 Query: 788 IPSKE 792 IP +E Sbjct: 423 IPLEE 427 >gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis 3_1_12] Length = 537 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ ++ +R L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ + Sbjct: 277 LLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 336 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ ++ + Sbjct: 337 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQM 393 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717 K ++I DR RL Q+ +++NAM F+++GS + R NG Sbjct: 394 QQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAEGSITL--GYRLNGQ 451 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D + VF RFV N+ +G GLGL+I I GG + + Sbjct: 452 KNELYFFVKDTGIGIPADKAEKVFERFVKLNSF---VKGTGLGLAICRVIIERLGGTIGV 508 Query: 775 SSSDEGVTTINCRIPSKE 792 ++ E R+P +E Sbjct: 509 DTAVEEGACFWFRLPVQE 526 >gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus DSM 14838] Length = 1031 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 125/213 (58%), Gaps = 7/213 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D++K++F+ ++S+E+R+PL I+GF+ L+ + + + ++ Y++ I+ ++ +LL L Sbjct: 661 QSDKLKSAFLANMSHEIRTPLNAIVGFSGLM----MYASDEEKEDYMQIINNNNEMLLKL 716 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ++DILDL+ ++AG ++L Y L D N + S+ + I+I ++ + D Sbjct: 717 ISDILDLSKLEAGSVELKYEEFDLTDYFNSMFASMKQRATNPKIQIVAVNPYQHCLVTLD 776 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ QI + ++NA+ ++++G+ + R+ G + F VK++G IP++ VF+RF Sbjct: 777 RNRVAQIITNYVTNAIKYTTEGTIEMGYEYREEGIY-FYVKDSGIGIPDEKKNKVFHRFE 835 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGLSI ++ GG+V S Sbjct: 836 KLDEFAQ--GTGLGLSICKAIAEAMGGNVGFES 866 >gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 473 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618 + ++K D++KN F+ +S+ELR+PLT+I G+++ L + + + ++++ + IS + Sbjct: 243 DEIQKNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQ--DPEETRLGINIISKETD 300 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L+ LV D+LD + + +G +K++ + LN L+ E+ IR++V ++ + Sbjct: 301 RLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPI 360 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + D R+ QI + NAM F+ +G + + ++ + + +V++ G IP ++ K V Sbjct: 361 HIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEILKHV 420 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F R+G GLGLSI + L GG ++I S TTI R P Sbjct: 421 TEKFFKGT---SRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 468 >gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB] gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB] Length = 764 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSY 578 D +E +II + + + F + + E+AL T +EA +A+++K +F+ ++S+ Sbjct: 337 DFPVELTIIEINSGDGVRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSH 396 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+PL IIG +L ++L ++ Q +YV +I A+ LL L+ ++LD++ ++AG + Sbjct: 397 EIRTPLNAIIGMAHILSRTEL---DTAQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRL 453 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +L + + +++ EV +A + E + +++ V D RL Q +SNA Sbjct: 454 ELENIPLAVENIVFEVLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNA 513 Query: 699 MDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F++ GS VI +A ++ + F V + G I + +F+ F + RR Sbjct: 514 IKFTADGSIDVRVITQAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYG 573 Query: 753 GVGLGLSIVESFINLHGGHVSISSS 777 G GLGL+I L GG V +SS+ Sbjct: 574 GTGLGLAITRQLAELMGGEVGVSST 598 >gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1811 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + IK+ F+ +S+ELRSPL I+G+T +L+T KL ++Q+ + I ++ + L+ Sbjct: 1438 NRIKDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKATQQA--LATIERNAKLQTQLIE 1495 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD++ + G M LN + + L ++ +++ NI+I+ +G + D Sbjct: 1496 DLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGEVLGDSA 1555 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+ +LSNA+ F+ G + + + + SVK+ G I + VF F Sbjct: 1556 RLQQVVWNLLSNAVKFTPAGGQIEIDLELKDINAQISVKDTGKGINPNFLPHVFEYFRQE 1615 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + R+ G+GLGL+IV LHGG V++ S EG+ T +P Sbjct: 1616 DSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLP 1662 >gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01] gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01] Length = 566 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++L +Q QY+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL---EEEQRQYLSN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ S +L ++ND+LD + ++AG+M++ + +L + A K E I + Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG V D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWLNGTAYFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422 Query: 788 IPSKE 792 IP +E Sbjct: 423 IPLEE 427 >gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 1014 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|116619668|ref|YP_821824.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222830|gb|ABJ81539.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 729 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 2/237 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K + LR+ADE+K+ F+ ++S+E R+PL +I+ T LL G L +Q + V +I Sbjct: 221 LDDKADHLRRADEMKSRFLSNMSHEFRTPLNSILALTRLLLDRAEGDLTGEQERQVFFIR 280 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L LVND+LDLA V AG ++ + + +L ++ + + + + Sbjct: 281 KSAESLYELVNDLLDLAKVQAGKTTVHLAPFDVKNLFGALRGMLRPLLVNTAVNLVFEEP 340 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + V+D ++ QI +SNA+ F+ G + D IFSV + G I Sbjct: 341 EGISEVVSDEGKISQILRNFISNALKFTDHGEVRVFVRREDADRVIFSVSDTGIGIDPAD 400 Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF F QR +G GLGL + L GG VS+ SS +T + IP Sbjct: 401 ADRVFEEFTQLESPIQRKVKGTGLGLPLSRKLAELLGGTVSVESSPGVGSTFSLTIP 457 >gi|229184210|ref|ZP_04311419.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1] gi|228599325|gb|EEK56936.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1] Length = 444 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 129/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNVEEKKMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 588 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K++F+ +S+E+R+PL ++G +++ +LG +Q Q++ I S+ L+ ++ Sbjct: 198 ASRAKSAFLATMSHEIRTPLNGVLGMVQVMERGRLGV---RQRQHLAVIRESAGALMKVL 254 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LD++ ++ G ++L+ L + + A E + ++ + D G + D Sbjct: 255 NDVLDISKIEVGKLELHAQPFELGAFAEGIGRLYAVLAEERGLSFRLSVEDAGHGRLIGD 314 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL QI S +LSNA+ F+ +G V+ AA D+ +V++ G IP +F++F Sbjct: 315 EARLRQIVSNLLSNAVKFTPEGEVVVSFAA-DDRSLTCAVRDTGIGIPAAQQAVIFDKFT 373 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + G GLGL+I + L GG + ++S+ +T R+P Sbjct: 374 QVDDGAARSFEGTGLGLAICRDLVELMGGEILVASTPGEGSTFTFRVP 421 >gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 870 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + ++E Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + +LL L+NDILDL+ +++G M ++ L L+ V S M + Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + V D RL Q+ + +++NA+ F+++GS + G V++ G I Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + +F RF Q G GLGLSI ++ + G ++++S + T R+P Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866 >gi|291523437|emb|CBK81730.1| amino acid-binding domain sensor hybrid histidine kinase [Coprococcus catus GD/7] Length = 959 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 19/266 (7%) Query: 540 LTFVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +T V ++ +A++A+ EK E + + A++ K +F+ H+S+++R+P+ IIGFT Sbjct: 548 VTMVRLSARKKAQKAVQEKAEEMAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTG 607 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + + + + + +E I SS LL+L+NDILDL ++ G +K N + ++ + Sbjct: 608 I---AMKNNPSDEVKNCLEKIDESSEHLLSLINDILDLTRIENGKVKYNPVPADVKNITD 664 Query: 653 EVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + +I K+ + K+ + +AD RL + ILSNA F+ G T+ + Sbjct: 665 SALDITKGFLTNRDINFKIQREEAKIPNVLADPARLRDVLVNILSNAAKFTPDGGTITFE 724 Query: 712 AA--RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763 A GD + + + G + E+ K VF F R Q GVGLG++IV+ Sbjct: 725 ARCLEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQEDSDVRTQYHGVGLGMAIVKK 784 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 ++++ GG +S+ S TT IP Sbjct: 785 YVDMMGGTISVQSKKHEGTTFTVDIP 810 >gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase [Methanococcus aeolicus Nankai-3] Length = 640 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 137/242 (56%), Gaps = 5/242 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE+ NE L+K D+ K+ + VS+ELR+PLT+I G+ +L+ +G++N Q + Sbjct: 399 QAEKLEISYNE-LKKLDKFKSEIISIVSHELRTPLTSIKGYVELVLDGTMGTINESQKRC 457 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E + + L L++++LDL+ ++ G +K++ S + LND++ V S+ N I Sbjct: 458 LEIANENIDRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKN--I 515 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 K+I+ + + D+ ++ + + ++ NA+ FS V ++A ++N +VK+NG Sbjct: 516 KIINKVEPITANLDKDKITGVLTNLIENAIKFSPVNENVTIEAFKENNMVHITVKDNGPG 575 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP+ +F+ F V+++ + + G GLGL+I +S + HGG + + S +T + Sbjct: 576 IPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKESTFHIL 635 Query: 788 IP 789 +P Sbjct: 636 LP 637 >gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B] gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B] Length = 632 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 127/219 (57%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ IIG + LL + L+ +Q ++VE I +SS L+ ++ Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSSHSLMTII 296 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 +DILD + V+AG ++L Y++ L +LL++V + K + N+++ D L V D Sbjct: 297 DDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSDIDPHLPMEVQGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD---FIFSVKNNGSSIPEDMCKSVF 739 RL Q+ + +LSNA+ F+ +G +L A +R +G+ F V ++G I ++ +++F Sbjct: 357 ATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAKEHQQAIF 416 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RF R+ G GLGL+I +NL GG + ++S Sbjct: 417 ERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTS 455 >gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1022 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 130/233 (55%), Gaps = 6/233 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R L + ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 625 DITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE---Q 681 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + + + S+ ++ Sbjct: 682 GDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVT 741 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ ++ + D+ R+ Q+ + ++NA+ ++ +G+ + D G ++ V Sbjct: 742 NPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDTGIRLY-V 800 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G IPE+ + VF+RF Q G GLGLSI ++ GG V S Sbjct: 801 RDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851 >gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 461 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 26/249 (10%) Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 VTDS R L +KN+ L ++ D +K++F+ +S+ELR+PLT++IG+++++ Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L ++Q +Y+ I LL L+ ILD++ ++AG ++L S + D + ++ + Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEV---DAVQLMRDA 304 Query: 658 IATKMHENNIR-IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----IL 710 +AT + + +KV D L ADR +L Q + SNA+ F+ G ++ +L Sbjct: 305 VATLLPIARKKGLKVSCDTTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVL 364 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 A R V ++G IPE+ VF+ F V + + G GLGL+IV+SF+ H Sbjct: 365 PAER----LAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAH 420 Query: 769 GGHVSISSS 777 GG + + S+ Sbjct: 421 GGEIRVRSA 429 >gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter denitrificans OCh 114] gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter denitrificans OCh 114] Length = 733 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 189/391 (48%), Gaps = 43/391 (10%) Query: 417 ENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 EN V+ DL + + +V+ ++I+ +++G A + PD + ++N ++ +++ E+ Sbjct: 40 ENKRVKSDLSAAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED- 98 Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSII 531 + PG T ++ E I + D R + Q +E + E +I Sbjct: 99 MQPGVSY----VTVLQFLTEEG--------IVNTGDLRPAEWRQKMIERVQSPEPEAVVI 146 Query: 532 PL-------------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 L P+ + +N+T +VR E L + A K++F+ ++S+ Sbjct: 147 QLWNNEYIRMIDRRGPDGDIISLGINITAAVRYEEKLEAARASAEAASRAKSAFLANMSH 206 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+P+ ++G D+L + L+ +Q YV+ I S LL ++ND+LD + ++A + Sbjct: 207 EIRTPMNGVVGMADVLTET---PLSEEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKL 263 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697 +L+ L ++EV + + + + I + V L S F+ D RL QI + +L N Sbjct: 264 QLHPEPFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSSDFIGDPGRLRQILTNLLGN 323 Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSIPEDMCKSVFNRF--VSNAHRGQ 750 A+ F+++GS + + + + G I ++ + G IPEDM VF F V + Q Sbjct: 324 AVKFTTEGSVTVRVSGKPDEATGKVILQIRVEDTGIGIPEDMIDHVFGEFNQVESERNRQ 383 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 G GLGL+I + I + G + + +S+EGV Sbjct: 384 FDGTGLGLAITKKLIKMMNGQIWL-TSEEGV 413 >gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 887 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 104/351 (29%), Positives = 161/351 (45%), Gaps = 29/351 (8%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D + +GV V + RI N A ++ + +N I AA R + E G + Sbjct: 250 DKMPDGVFVIDQEERITDCNNAALNILEITKN------DIGKPAAKILRQWPELYGLIIE 303 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERAL 555 A I D +++ L S + I+ LP+ LT N+T + E L Sbjct: 304 AREIKHADLKKQKLDLV------SWFDIDILALPDKNGCLTGRIIVLRNITSRKQIEYDL 357 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 E A+ K+ F+ ++S+E+R+PL +IGF+ LL + +L+ Q Y+ ++ Sbjct: 358 IATREKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKT---TLDDVQFHYINTVNN 414 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 S+ LL L+NDILDL+ ++AG ++L I L +L EV A H N+ + + I Sbjct: 415 SAKQLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLELLLDIPS 474 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGS 728 S +AD L QI +L NA+ F+S G TV D FIFSV++ G Sbjct: 475 SLPESALADPVCLKQILINLLGNAVKFTSGGEIELKIETVPSDNDPDYLVFIFSVRDTGI 534 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I + K +F F R+ G GLGL+I + L G + + SS Sbjct: 535 GISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESS 585 >gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] Length = 1138 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +A +A+ K+ F+ +S+E+R+PL I+ +D+L TS L +Q +Y + IS Sbjct: 262 LVVARDAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL---PQRQQRYADVIS 318 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD + V+AG M L + L D +V + K + + V D Sbjct: 319 KSGKSLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVFVD 378 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731 +L + D RL Q+ +++NA+ F+ G V++ RD D +V + G IP Sbjct: 379 PRLPQVLGDPTRLRQVIGNLVNNAIKFTDLGG-VLIAIDRDPEDPRRIRVAVHDTGPGIP 437 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 D ++F F R G GLGL+I + + GG S+SS+ EG T Sbjct: 438 ADKLPTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGST 491 >gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 526 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623 A++ K+ F+ VS+ELR+PL I+GF+D+L G N +Q +YV + S LL++ Sbjct: 251 ANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSV 310 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VN +LD++ ++AG +L ++ + + +A + + + LG VAD Sbjct: 311 VNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRGLGEVVAD 370 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 ++ + QI ++ NA+ F+ G V + AA +G +V + G IP D + FV Sbjct: 371 QRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTVSDTGIGIPADKLALLGQPFV 430 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + RR G GLGLS+V+ + LHGG+ +I+S T I I + Sbjct: 431 QIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEIAT 479 >gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1353 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + L + A+ K+ F+ ++S+E+R+P+ +IG + LL + +LN Sbjct: 617 DITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT---ALN 673 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q + + + LL ++NDILD+A ++AG M+L ++ LL+E+ + + Sbjct: 674 DQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQ 733 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718 E +R V L G + D R+ QI ++ NA+ F+S G V + D+ D Sbjct: 734 EKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTVSREDDHADTCC 793 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G IP D+ +F+ F RR G GLGLS+V GG + + S Sbjct: 794 LRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVES 853 >gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] Length = 1014 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 1036 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 105/452 (23%), Positives = 192/452 (42%), Gaps = 74/452 (16%) Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGET- 439 H D P L+ I RGG M NL V +L + K E Sbjct: 604 HADGSEEPVNAHLNAIAW---RGGRALMLSLMPVAAANLPVPAELPAASDDEEKQALEAH 660 Query: 440 -------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 +D ++GV + P+GRI+ N + +L+ E + Sbjct: 661 VEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERD-------------------- 700 Query: 493 ESDGWDLFAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSII 531 E++G F +++ + + +R ++ G L +L+D L +I Sbjct: 701 EAEGK--FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIG 758 Query: 532 PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 LP+ + + ++T R E LT + +A K F+ +S+E+R+PL IIGF Sbjct: 759 KLPHTRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGF 818 Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 ++L+ K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND Sbjct: 819 SELMADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLND 878 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + E + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI Sbjct: 879 AIGEAIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVI 938 Query: 710 LKAARD-NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGL 758 + + + NGD + V++ G + P ++ R +A + G GLGL Sbjct: 939 VSTSYELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGL 998 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + ++ + + +I S+ T + P Sbjct: 999 PLTKAMVEANRAQFAIDSNPGQGTVVEIVFPP 1030 >gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp. m3-13] Length = 594 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 169/361 (46%), Gaps = 49/361 (13%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GW 497 +++GV DG I ++NP F W YY E + G Sbjct: 264 MADGVITLNRDGTILVTNPPAEKFLQAW----------------------YYQEGNASGE 301 Query: 498 DLFAAIITSFD-----DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 DL ++ F ++ +S++ T + + + I+ P + T ++ +V Sbjct: 302 DLPGEVVEMFQRAVSVEKEQSIELTYQGRT-----WVIVMSP----LYTQTHIRGAVAVI 352 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + G+ + ++ + Sbjct: 353 RDMTEE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGT-DEEKKELASV 407 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S + LVND+LDLA ++AG + LNY + + ++ + E +I ++ Sbjct: 408 IYDESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSR 467 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 +G G D R+ Q+ + ++ NA+ ++ T+ + A N VK++G IPE Sbjct: 468 VEGD-GVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVKIDVKDSGHGIPE 526 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + VF RF A R G GLGL+IV++ I H G +S+ S + TT + IP Sbjct: 527 EDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIPQ 586 Query: 791 K 791 K Sbjct: 587 K 587 >gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 315 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 122/216 (56%), Gaps = 3/216 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + +++KN FV VS+E+R+PLT I G ++L T L + Q ++ ++S LL L Sbjct: 86 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIGVSNSERLLRL 145 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682 VN+IL+L +D+G M+LN +N ++ + +++ +N+I I + D +A Sbjct: 146 VNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEILA 205 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + ++Q+ + +LSN++ FS G+ V + A N + I +VK+ G +P +++F RF Sbjct: 206 DEETIVQVLTNLLSNSIKFSHSGNKVEIYATVSNKEIIVAVKDYGKGVPPHKLETIFERF 265 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + Q+ G GLGL+I ++ + H G + + S Sbjct: 266 EQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVES 301 >gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 714 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 72 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 127 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 128 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 187 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 188 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 247 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 248 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 289 >gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] Length = 1014 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 870 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + ++E Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + +LL L+NDILDL+ +++G M ++ L L+ V S M + Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + V D RL Q+ + +++NA+ F+++GS + G V++ G I Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + +F RF Q G GLGLSI ++ + G ++++S + T R+P Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866 >gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] Length = 670 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K + L A++ K+ FV +VS+E+R+P+ ++G DLL + LN KQ +Y + I Sbjct: 160 LRKKIKQLESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLLET---PLNDKQLRYAQAIK 216 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++ND+LDL+ V+AG + + + L ++++++ + + E + ++ Sbjct: 217 RSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDIQ 276 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSI 730 K F+ D RL QI + +LSNA+ F+ KG T ++ D FSV + G + Sbjct: 277 LKSDRFIGDHYRLKQILNNLLSNAIKFTDKGWTALRIKVVSETDDQATLKFSVSDTGLGL 336 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 E +F RF R G GLGLSI + + L G + + S Sbjct: 337 SEKQQSQLFKRFQQANETITREFGGSGLGLSICKQLLALMDGDIGVKS 384 >gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] Length = 609 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T +NEA A E K+SF+ +S+E+R+P+ ++GF +LL S L+ +Q+++VE I Sbjct: 207 TARNEANAMA-EAKSSFLAKMSHEIRTPMNGVMGFAELLSRS---DLSHEQARHVELIRE 262 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S L L+NDILDL+ +++G ++ ++ L+ Q E I + Sbjct: 263 SGKALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEPLAREKVIGLSSQVSD 322 Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L F + D RL Q+ S +++NA+ F+ +G ++ +G F+V++ G+ IPE+M Sbjct: 323 TLPQFAMLDALRLRQVLSNLVANAIRFTDRGGVSVIVEPSPSG-IAFTVRDTGTGIPEEM 381 Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F+ F + + +R G GLGLSI L GG + + S+ Sbjct: 382 IEAIFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVIST 426 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 12/220 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILL 621 ++ + +K+ F+ VS+ELR+PLT+I G +L + L + +S++ + + YI+ ST L+ Sbjct: 939 KQIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLLKA-DSEEGKRMLYIAVDSTDRLV 997 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKVISDGKLG 678 L+NDILD+ +++G +K+ + DL+ E V Q++A N + + + Sbjct: 998 RLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQALA-----NKVEVTLSVSSLSI 1052 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S AD R++Q +LSNA+ FS G V L + + +F VK+ G IP + +S+ Sbjct: 1053 SLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHLLFIVKDEGRGIPTEKLESI 1112 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V ++ G GLGL+I S + H GH+ + S Sbjct: 1113 FERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVES 1152 >gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K] gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K] Length = 461 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 26/249 (10%) Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 VTDS R L +KN+ L ++ D +K++F+ +S+ELR+PLT++IG+++++ Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L ++Q +Y+ I LL L+ ILD++ ++AG ++L S + D + ++ + Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEV---DAVQLMRDA 304 Query: 658 IATKMHENNIR-IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----IL 710 +AT + + +KV D L ADR +L Q + SNA+ F+ G ++ +L Sbjct: 305 VATLLPIARKKGLKVSCDTTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVL 364 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 A R V ++G IPE+ VF+ F V + + G GLGL+IV+SF+ H Sbjct: 365 PAER----LAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAH 420 Query: 769 GGHVSISSS 777 GG + + S+ Sbjct: 421 GGEIRVRSA 429 >gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 152/672 (22%), Positives = 280/672 (41%), Gaps = 112/672 (16%) Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK---NTETEG 230 + ++LA + LK +++ + L +++ LVW +D+ G L+ N +++ +E E Sbjct: 284 MAADLANSALKV-----NMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASEAEI 338 Query: 231 I--------------VFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272 + F+ +A+ R EE ++ + ET+ T Sbjct: 339 VGRTDYDFVDADLADFFRGHDLRAMNSGRPCINEE---QVTYRDDGHVEYLETIKTPLFD 395 Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT---YEILHNLTVA-IAIFDQNRYL 328 ++ K++ VL G+A D+++ + D+L + +++LHN + I + DQ L Sbjct: 396 DDG--KLIGVL------GVARDITERKRIADELKESELRFKVLHNASFGGIFLHDQGVLL 447 Query: 329 QFH-------NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381 + + EL ++ L + D++ E +R+ + P Sbjct: 448 DCNQGLSDITGYTQEELSGMEALDLLAPSARDDVREKIRARFERP--------------- 492 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGE 438 Y++ +D P L + S P G + F ++T + E + + Sbjct: 493 YETVGLRRDGTCYP----LQIAAKSIPYKGRVVRVVEFRDITERKRAEDELKDSERRHRV 548 Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 ++ G+ F DGRI N F + + L +R R + Sbjct: 549 IFENSPLGMIRFSRDGRILDCNDRFVEMMGSSREALIGFPMLRASNPDMRRALATA---- 604 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERA 554 A ++++D S G E + L P+ Q+ + T + ++ R + A Sbjct: 605 -IAGSPSAYEDYYSSETGRRE----TFLHVQFNPVNPGQSPTEVIATLEDFSERKRDQDA 659 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E K F+ ++S+E+R+PL I+G LL ++ L+ +Q++Y Sbjct: 660 LRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHST---GLSREQAEYSGAAL 716 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMHE-- 664 SS L+NL+ DILDL+ V+AG + + L + +V QS T + E Sbjct: 717 QSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFKLTSAQSGVTLICELG 776 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719 N+ +VI D RL Q+ + +L NA F++ GS V+ +G Sbjct: 777 ENVPRRVIGDAI---------RLQQVLTNLLGNAFKFTATGSIVMAAHRLPDGPSKGYRI 827 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +FSV + G IP++ ++F+ F VS + + +G GLGLSI + + L GG +SI S Sbjct: 828 LFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMGGTMSIESE 887 Query: 778 DEGVTTINCRIP 789 + TT+ +P Sbjct: 888 EGAGTTLYVALP 899 >gi|260776063|ref|ZP_05884958.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC BAA-450] gi|260607286|gb|EEX33551.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC BAA-450] Length = 563 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 10/243 (4%) Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 LT EA +A+E + + FV +++ELR+PL ++G +LL + SL+ +Q + Sbjct: 188 LTNTQEARARAEESERATKEFVAMINHELRTPLNGLLGSAELLADT---SLDEEQRTLLT 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S + L +++NDILD + + AG+M+L ST +L N ++ A K E I+ + Sbjct: 245 NLSHTGDFLRHIINDILDFSKISAGMMELIPSTFAWKELTNMLQGVFANKAQEKGIQFSI 304 Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 S ++ +F + D R+ QI ++ NA+ F+S GS + ++N I SVK+ G I Sbjct: 305 HSAPEVPNFLIGDFDRICQILINLVGNAIKFTSAGSVQVEVFWQENNLHI-SVKDTGIGI 363 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE +F+ FV +R G GLGL+I ++ I+L G +S +S T I Sbjct: 364 PEGAKAILFDPFVQADRTAKRNFEGTGLGLAICKNLIDLMKGEISFTSQTGVGTQFKLSI 423 Query: 789 PSK 791 P K Sbjct: 424 PLK 426 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 14/243 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L EA A++ K+ F+ ++S+E+R+P+ +IIG + L L+T LN KQ Y+E + Sbjct: 537 LQTAKEAAENANQAKSEFLANMSHEIRTPMNSIIGMSSLALQTP----LNDKQRGYIEKV 592 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S S+ LLN++NDILD + ++A M + +L L+++V + K+ E + + + Sbjct: 593 SHSAESLLNIINDILDFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDI 652 Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNG 727 D ++ V D RL QI + +NA+ F+ +G +I++AA +D+ FSV++ G Sbjct: 653 DAEVPQQVVGDPTRLRQILLNLGNNAVKFTQQGE-IIIRAAHSKNNQDDNIIHFSVQDTG 711 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I +D ++F F RR G GLGL+I + I L GG + + S + +T + Sbjct: 712 IGISKDKQNNLFQSFSQADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFH 771 Query: 786 CRI 788 I Sbjct: 772 FTI 774 >gi|54298075|ref|YP_124444.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris] gi|53751860|emb|CAH13284.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris] Length = 827 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 162/316 (51%), Gaps = 22/316 (6%) Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSV----LEYSIIPLPNAQTMLT 541 + YY ++D + I S ++ GT + LS+ V LE II + + Sbjct: 207 TSYYKKADKIVMDKGIPLSLEEPFYCPDGTTKETYLSNKVPLRDLEGKIIGM-----LGV 261 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++TD + E L++ EA +A+ +K F+ ++S++LR+PL+ ++G +L+K Sbjct: 262 SVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQVTDP 321 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q QY E+I S LL+L++ ILD+ ++ + +L +T +N+ + E+ Sbjct: 322 V---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMP 378 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + + + V D K+ + DR +L +I +L NA+ F+ G I L+ + Sbjct: 379 SIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSGYIAIDVKLLELNNE 438 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +G F++ + G IPE+ +F+RF + + G+ +G G+GL IV+S++NL GG + Sbjct: 439 SGLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQ 498 Query: 774 ISSSDEGVTTINCRIP 789 ++S TT +P Sbjct: 499 VNSEPGVGTTFYFELP 514 >gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1167 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667 E I ++ LLNL+NDILD++ V+AG +++ N S L + L + Q +AT E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAT---EKKL 592 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +FSV+++ Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMIVSRQPGAGIVFSVRDS 652 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I + + +F F RR G GLGLSI L GG +S++S+ Sbjct: 653 GIGIAPEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 1035 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1152 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 11/221 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 NEA A+ K+ F+ ++S+E+R+P+ IIG LL + L+ +Q+ +V+ + S+ Sbjct: 503 NEAF-VANNAKSQFLANMSHEIRTPMNGIIGMAALLLDT---PLDGQQTVFVQTVRKSAH 558 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L+ ++NDILD + V+AG ++L + L L + +A K HE + I + Sbjct: 559 ALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVP 618 Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIFSVKNNGSSIPED 733 + + D RL Q+ I+ NA+ F+ G S I AA D+ +FS+K+ G+ +PED Sbjct: 619 DALIGDSIRLRQVLVNIVGNAVKFTDAGEVSLEISMAAMDDARCTLLFSIKDTGAGLPED 678 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 ++VF F R+ G GLGL+I +S + L GG + Sbjct: 679 KIETVFEAFAQADSSVTRKFGGTGLGLAISQSLVRLMGGEI 719 >gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 864 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 28/255 (10%) Query: 547 DSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNII 588 +S R L++ NE L+K A+ K+ F+ ++S+ELR+PL+ II Sbjct: 172 ESAELYRLLSQDNERLQKLVEKRTAELERARDQAEGANRAKSQFLANMSHELRTPLSGII 231 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G DLL ++L +++Q +Y S S+ LL L+NDILD + ++AG +++ + L Sbjct: 232 GMVDLLLDTRL---DNEQQEYARLASDSAHALLALINDILDFSKIEAGKLEIEEAEFSLG 288 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 L V + A + I + D +L ++V D RL Q+ + +LSNA+ F+ KGS Sbjct: 289 SLTEGVTELFALAAQKKGIVLTSYVDPQLPAYVRGDALRLRQVLANLLSNALKFTEKGSV 348 Query: 708 VI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 + +K D G F V + G + ++ + +F F R+ G GLGL+I Sbjct: 349 QLQVKILGDGGQAPLIRFEVCDTGIGVDAEVAERLFQSFTQADSSTTRKYGGTGLGLAIC 408 Query: 762 ESFINLHGGHVSISS 776 + + L GG + I S Sbjct: 409 RNLVELMGGEIGIES 423 >gi|218708513|ref|YP_002416134.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus LGP32] gi|218321532|emb|CAV17484.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus LGP32] Length = 795 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL IIG + +L S+L + KQ Q Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S+ L N+ NDI+D+ D ++L + I D + E++ A + +R Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L S V D RL Q+ ++SNAM F+ G V+ +A +GDF + V++ Sbjct: 381 DLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANIMMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ + IN+ GH+ + +S+EG Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ R+P Sbjct: 500 STFTVSIRVP 509 >gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] Length = 744 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 7/244 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 E+ EK A A++ K+ F+ ++S+ELR+PL IIGF++++ G L S K +Y Sbjct: 486 EKYADEKTRA-EDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGDLGSDKYKEYC 544 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S LLN++NDILD++ ++AG ++L+ + + ++ + + I+ E NI++ Sbjct: 545 KDIHSSGNYLLNVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISATAAEKNIKV- 603 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 V + ADR+ + QI +L+N++ F+ + V + +AR G F + +NG Sbjct: 604 VNENLPHMHLQADRRAVKQILLNLLANSVKFTPENGEVRV-SARKVGAFAELKITDNGIG 662 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + + FV N +G GLGL+I S LHGG++ I S T + + Sbjct: 663 IAKKDIDRLAKPFVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEIDSEVGKGTEVTIK 722 Query: 788 IPSK 791 +P K Sbjct: 723 LPLK 726 >gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 893 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 16/245 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L + + L K+ + K+ F+ ++S+ELR+PL +++ + +L +K G+L ++ Y Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S + LLNL+NDILDL+ V+AG M++ + L +L ++ + N+ Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMEGYFSKSAESKNLEFD 598 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI----- 720 + ++D +D RL QI +LSNA+ F+ GS V LK + N DFI Sbjct: 599 IEVADDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLKVKKMNSIVTSDFIISGDV 657 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G I + + +F F RR G GLGLSI L GG++++ Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITV-E 716 Query: 777 SDEGV 781 S+EG+ Sbjct: 717 SEEGI 721 >gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 806 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 127/238 (53%), Gaps = 10/238 (4%) Query: 557 EKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QY 609 EKNE K + KN F+ VS+E+R+PLT IIGF++++K + G + S + +Y Sbjct: 559 EKNELYHAKKMAEKENSHKNDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPVGSPRYIEY 618 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 YI S ++L++VND+LD++ +++G M ++ ++ LN+ ++E + +E I + Sbjct: 619 ANYIDRSGNLVLDIVNDLLDISKIESGKMNFHFESVSLNETISEAISLMELYANEKRILV 678 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGS 728 + + AD + + QI ILSNA+ F+ G +++ A N + + VK+ G Sbjct: 679 RTSFSNDIPPIFADLRSIKQIALNILSNAIHFTPSGGQIVISTAYTRNKEVVLRVKDTGI 738 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + + + F + N+ + + G GLGL + ++ ++ + G S+ S+ T I Sbjct: 739 GMTDYELEKAMKPFGQIPNSQQVRGEGTGLGLPLTKAMVDANMGKFSVFSTPSKGTLI 796 >gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] Length = 640 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 166/326 (50%), Gaps = 38/326 (11%) Query: 474 LSPGTHIRNIAATCSRY--YN---ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528 +SP H+ + A S+Y YN E G D + SF++ +Q + ++ Sbjct: 181 ISPLVHLSDTARKISQYHTYNIRAEYKGKDEIGDLTYSFNEMLTEIQAREDTINRE---- 236 Query: 529 SIIPLPNAQTMLTFVNVTDSVRAE----RALTEKNEAL--RKADEIKNSFVQHVSYELRS 582 NA+ +V AE RA E ++ L A+++K+ F+ +VS+E+R+ Sbjct: 237 ----RHNAEQR--------AVEAEEANKRAKVEFDQRLVAESANKMKSEFLANVSHEIRT 284 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ I+GF++LL+ ++ K +YVE I++S LL+L+NDILDL+ V+AG ++L Y Sbjct: 285 PMNAILGFSELLEKE---DIDKKSMEYVEAINSSGRSLLHLINDILDLSKVEAGKLELIY 341 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701 + + L L+NE + + + N+ V D + V+ D R+ QI ++ NA+ F Sbjct: 342 TKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVKF 401 Query: 702 SSKGST-VILKA-ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + +G V +KA + NG D F V + G I E+ + +F F S + G G Sbjct: 402 TEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGTG 461 Query: 756 LGLSIVESFINLHGGHVS-ISSSDEG 780 LGLSI + L GG ++ +S+ EG Sbjct: 462 LGLSICKELSQLMGGSINLVSAKGEG 487 >gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 536 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G + Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LLNL+N+ILDL+ ++AG +LN + L ++ E + + I Sbjct: 304 TYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGI 363 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I I + + D + QI +LSNA+ F+ +G + LK +G SVK+N Sbjct: 364 TIHEIFEQGMPRIWGDERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDN 423 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 GS I ED V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 424 GSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRS 475 >gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 907 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 133/244 (54%), Gaps = 13/244 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EKN++++ + K+ F+ ++S+ELR+PL +I+ + +L + G+L+ KQ ++ E I Sbjct: 488 LEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILILSQMLSENANGNLSKKQIEHAETIY 547 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL+L+NDILDL+ +++G +++ + + D+ V++ + ++ Sbjct: 548 SSGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFVERQFHPIAEQKGLQFNCYIH 607 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIP 731 + S + D QRL QI +LSNA F+++G+ + + ++ +FS+ + G IP Sbjct: 608 QETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVRFEVHPSYSESTKVVFSIIDTGIGIP 667 Query: 732 EDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +SVF F H+G + G GLGLSI NL GG + + S D +T + Sbjct: 668 PEKQESVFEAF----HQGDGTTTREYGGTGLGLSISRELANLLGGRIEVVSEDGKGSTFS 723 Query: 786 CRIP 789 +P Sbjct: 724 LYLP 727 >gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 142/275 (51%), Gaps = 15/275 (5%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 D L ++I L +Q L + AE+ EK A +A++ K+ F+ ++S+ELR+ Sbjct: 495 DLRLRATVIDLKRSQAALERQTNELADLAEKYQREKTRA-EEANQTKSKFLANMSHELRT 553 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 PL IIGF++++ + G L S++ Q Y + I S LL ++NDILD++ ++AG MKL+ Sbjct: 554 PLNAIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVINDILDMSKIEAGRMKLD 613 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + L L E + ++ + + ++ + + + S VADR+ QI +LSNA+ F Sbjct: 614 MEELDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRRATKQIIVNLLSNAVKF 672 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK------SVFNRFVSNAHRGQRRGV 754 + G +++++ + + + + + G I P + + V ++ H G Sbjct: 673 TPDGGRIVVRSRQLDDRIVLMIADTGIGIAPHSLARLGRPFEQVESQLTKTYH-----GS 727 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I S LHGG + + S + T + +P Sbjct: 728 GLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762 >gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 703 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 9/246 (3%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 RAE + E +A RKA+E K F+ ++S+E+R+P+ IIG LL S+ L ++Q Sbjct: 313 RAEN-IRELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTLLAMSQ--PLTARQ 369 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++V+ ++ S+ LL L+ND+LD+A ++A ++L L +L EV + + E Sbjct: 370 QEFVKTLNVSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLEVASMMTVRSREKG 429 Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + D G +F D RL QI + SNA+ F+ G I A SV++ Sbjct: 430 LTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGGVEIRVACGAEDSVAISVRD 489 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + ++F++FV + R+ G GLGL+I + L GG ++I S +T Sbjct: 490 TGIGIAPENLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGGAIAIDSQPGHGST 549 Query: 784 INCRIP 789 +P Sbjct: 550 FTVTLP 555 >gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1135 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NV + + RA T+++ A A+ K++F+ ++S+E+R+P+ IIG L++ S + Sbjct: 628 NVAFGIESFRARTQRDAA-EGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRS---GVT 683 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ +E + ++ LL+++NDILDL+ ++AG ++L + L D+++ V+ IA Sbjct: 684 PEQAARLEKVDSACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSIIAEPAR 743 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI- 720 + + I V D + D RL Q SNA+ F+ KGS + L+A +D GD + Sbjct: 744 DKGLAIDVSGDAQALWLRGDPTRLRQALLNYASNAVKFTDKGS-ISLRAELLQDGGDELL 802 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSVK+ G I + +F F R+ G GLGL+I + + L GG V + S Sbjct: 803 LGFSVKDTGIGIEPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGGEVGVDS 862 Query: 777 S 777 + Sbjct: 863 T 863 >gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 484 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 27/238 (11%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K+ F+ ++S+ELR+PL +++GF++LL G LN+KQ +YV+ I S LLNL Sbjct: 226 EASRAKSDFLANMSHELRTPLNSVLGFSELLTDELFGHLNAKQHEYVKNILFSGRHLLNL 285 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGSF 680 +NDILDL+ V+AG L S + +++ + Q A K H+ ++ +++ D + Sbjct: 286 INDILDLSKVEAGKSVLEPSMVKFREVIAGTLTLLQEKALK-HDVHLGLELPVDCDI-EL 343 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------------DNGDFI- 720 +AD ++L QI +LSNA+ F+ G T+ + A R + DF+ Sbjct: 344 MADERKLKQIMFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAGKYQPGERQPEAEDFVE 403 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +V+++G I + +F F + + + + G GLGL++ + + LHGG V + S Sbjct: 404 ITVEDSGIGIKREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTKRLVELHGGQVGVES 461 >gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870] gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68] gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] Length = 1035 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 389 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 4/242 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612 AL E A++ K++F+ +S+ELR+PL IIGF++L+ +G L N + +Y+ Sbjct: 137 ALRLAKEGAEAANQAKSNFLATISHELRTPLNAIIGFSNLILMELMGPLSNERYREYLRD 196 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+AS LL+++NDILDL +AG +L S I D + V++ + K E + + Sbjct: 197 INASGEHLLSIINDILDLTKAEAGQTELFESVIHPRDAIIPVERLLMPKAREAGLTLTSN 256 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIP 731 L AD ++ QIF +LSNA+ F+ G ++ + A GD +V + G I Sbjct: 257 ITEHLPLLRADERKAKQIFLNLLSNAVKFTPPGGSIEIDAHLTHKGDLAIAVADTGIGIA 316 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + V FV RR G GLGL +V+SF+ LH G + + S T P Sbjct: 317 PEHIDRVCEPFVQIDSSLSRRHDGTGLGLPLVKSFMELHEGSLHLRSKSGIGTCAIVTFP 376 Query: 790 SK 791 +K Sbjct: 377 AK 378 >gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56'] gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56'] Length = 520 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 3/233 (1%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T AER + D +++F+ +S+ELR+PL I+GF +L++ G L+ Sbjct: 241 ITRFAAAERTYRADLQQASAMDRERSAFLAGLSHELRTPLNAILGFAHVLESEVDGPLSQ 300 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + + I S L L++DILDL+ ++ G ++L+ + L L+++V + + + Sbjct: 301 DAREALSVIRQSGEHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARD 360 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++++V D L + AD +R+ QI + ++SNA+ F+++GS + R I V+ Sbjct: 361 KPLQLRVTGDHALVAH-ADPRRVRQILTNLVSNAVKFTARGSVTVNITGRGRYAAIV-VQ 418 Query: 725 NNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + +VF + R +R G GLGLSI + +HGG + + S Sbjct: 419 DTGPGIPPEETSAVFEEYRQTGDVRSRRAGTGLGLSIARRLVLMHGGTIQLES 471 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 140/259 (54%), Gaps = 11/259 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V++ + R++ L A++ K+ F+ ++S+E+R+PL I+G LL+T++ Sbjct: 660 THVDINERKRSQADLLSAKLQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE-- 717 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 N +Q++Y+ + S+ L L++DILD++ ++AG M + + + L + +++ T Sbjct: 718 -PNEEQNEYLTGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYT 776 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + I D +L + + D RL QI ++ NA+ F+ KG ++ + N +F Sbjct: 777 EAQGKGLVLDFIWDDELPTVLIGDEARLRQILFNLVGNAIKFTDKGEVLVEVSLLPNSNF 836 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772 +F+V + G I E+ K +F FV ++ + +G GLGLSIV +++ GG + Sbjct: 837 SSVRVLFTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDI 896 Query: 773 SISSSDEGVTTINCRIPSK 791 SI S+ TT+ +P K Sbjct: 897 SIDSALGEGTTVYLSLPLK 915 >gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 1035 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 501 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 33/360 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I+ +++GV V D + L NPA L + PG S Y +++ + Sbjct: 154 INCMADGVLVTNRDLEVVLCNPALMRLLELSTPPPQPGP--------LSFYLDDTSLKEA 205 Query: 500 FAAIITSFDDE------RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 ++T+ + + ++ +G L + S Y P+ Q +L V V + Sbjct: 206 IYTLLTAPEQDNITYISQELRKGRAYLRALSAPFYG----PDLQ-LLGVVTVFHDITG-- 258 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 ++ DE+KN FVQ VS+ELR+PL+ I ++ G L KQ + + Sbjct: 259 --------FKELDEMKNEFVQMVSHELRAPLSAIKMQHTVILDGLAGDLTEKQRELLVRA 310 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 A LL+L+N++L++A ++AG +L + L +L ++ + + TK I +++I+ Sbjct: 311 HAKIQGLLDLINELLNVARMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLIT 370 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 L ADR+ + ++F +L NA+++S G V + A + V + G + PE Sbjct: 371 PPDLPLIQADRRSMEEVFMNLLCNAINYSPNGGNVKISAVSHSEYLEVLVSDTGVGLEPE 430 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 ++ K +F++F H R+ G GLGL+IV++ I H G + + S TT +P+ Sbjct: 431 EIPK-IFDKFYRAKHPQTRQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLPT 489 >gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 913 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 134/260 (51%), Gaps = 11/260 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ T++ D+ + R L + N+ L A + ++ F+ ++S+E+R+P+ ++G +L++ Sbjct: 505 AEARQTYIQQLDT--SNRQLDKSNQELAAAIQARSEFLANMSHEIRTPMNGVLGMLELVE 562 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + +LN Q Q +E S LL L+NDILDL+ +++G + L L D L++++ Sbjct: 563 NA---NLNDVQKQQLEIARRSGQTLLALINDILDLSKIESGKLALESLPFSLQDFLSDLR 619 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ E NI + + +VA DR RL Q+ + ++SNA+ F+ G I Sbjct: 620 ELYGKQLREKNITCTLACAEDVPEWVAGDRIRLWQVLTNLVSNAVKFTKDGGVTISVNLL 679 Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 G F V + G IP+ +F+ F R+ G GLGL+I ++ + L G Sbjct: 680 QEGQEERLSFQVTDTGIGIPKAAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLKLMG 739 Query: 770 GHVSISSSDEGVTTINCRIP 789 G +S+ S + +T +P Sbjct: 740 GAISVRSEEGEGSTFAFSMP 759 >gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 637 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 134/248 (54%), Gaps = 9/248 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D + + L E AD++K+ F+ ++S+E+R+PL I+G Sbjct: 245 IAPFEGNRVLALIHDIGDRILRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVG 304 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ ++ ++ +Y+E I +S +LL L+NDILDL+ +++G ++++ + + Sbjct: 305 FSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAG 361 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ EV++ KM ++N+ +KVI DR R++Q+ LSNA+ + KGS + Sbjct: 362 LVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGSITL 420 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 + G ++ V + G I ++ +F RF Q G GLGLSI +S + Sbjct: 421 --GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERL 476 Query: 769 GGHVSISS 776 GG + ++S Sbjct: 477 GGRIEVTS 484 >gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] Length = 1014 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ + + + S LL+++NDILDL+ V++G M L ++ LL E + Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + I +G + D R+ Q+ S ++ NA+ F+ +G I KAA Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 RD V + G I D ++F+ + RR G GLGL + + + + GG Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S + TT+ +P +E Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760 >gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19] gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292] gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName: Full=PleC-divJ homolog sensor gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19] gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 1035 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|301162819|emb|CBW22366.1| putative two-component histidine sensor kinase [Bacteroides fragilis 638R] Length = 639 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R++ AL E + +++ +K++F+ ++S+E+R+PL I+GF+D+L + GS Q Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I ++S +LL L+NDILDL+ ++A + L + L + S+ E+ Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 R + + K SFV D QRL Q+ +L+NA F+ G+ T+ + ++ +F+V Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + G IP++ K VF RF Q G GLGLSI + ++ GG + I E Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYE 628 >gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 1175 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 183/387 (47%), Gaps = 31/387 (8%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T Q +LE ++ D+++EG+ V G + SN + +L + ++ L Sbjct: 399 TKQKELEERFQDQANFLNSITDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDELLDSNF 458 Query: 480 -----IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSII 531 + N T S++ D + ++ S D K+ G +E+ + SVL ++ Sbjct: 459 YSDVLVENENITLSKF----DSLMKKSGVLHSDDVLFKTKNGKNIDIEMSAVSVLRHNKK 514 Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 L ++ F +++D + +L E +A + K++F+ ++S+ELR+PL IIG + Sbjct: 515 SL-----IVVFKDISDRKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMS 569 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 + + + Y++ I S ILL ++NDILD + ++AG + + L+D+L Sbjct: 570 YIALNQ---DTDPRIKNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDML 626 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----- 705 ++ I K +E ++ + + D S + D R+ QI +LSN++ F+ G Sbjct: 627 KKLSDFIHLKAYEKDLELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFTDHGEIEIS 686 Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 +IL AA + +F++++ G + ++ +FN F RR G GLGL+I + Sbjct: 687 VEALILDAA--DSKLVFTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITK 744 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 I L G++S+ S TT +P Sbjct: 745 QLIELMDGNISVESEKGVGTTFKVELP 771 >gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1346 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 46/288 (15%) Query: 531 IPLPNAQTMLTFVNVTDSVRAER----------ALTEK---NEALRK------------- 564 IPL + L FV + DSVR+ R AL K N LR+ Sbjct: 565 IPLMGPEGCLGFVGL-DSVRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQA 623 Query: 565 --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A + K+ F+ ++S+E+R+P+ +IG TDLL ++L +Q E I +S LL Sbjct: 624 EIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDTEL---RPEQRSLAESIQSSGEALLA 680 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+NDILD + ++AG ++L L+ LL ++ +A + E + + + D + + V Sbjct: 681 LINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQ 740 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAAR--------DNGDFIFSVKNNGSSI 730 D RL QI + ++ NA+ F+ +G V++ AR D+ +F+V++ G + Sbjct: 741 GDPGRLRQILTNLVGNAIKFTHQGEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIGV 800 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 PED +FN+F R+ G GLGL+I + GG V + S Sbjct: 801 PEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQS 848 >gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 763 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 4/233 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E ++ AD +K +F+ VS+ELR+PLT+IIG+TD+L+ LG L+ + + + Y+ +S Sbjct: 518 EQVQHADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELSPEVQETLGYMRQASLN 577 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ +NDIL+ + ++AG + + + + ++ V + + E ++ + V + Sbjct: 578 LMRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIPPDIPQ 637 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738 A+ RL Q+ +LSNA+ F+ + + +VK++G I PED + + Sbjct: 638 IAANIGRLEQVLINLLSNAIKFNRPQGWIEISVEPRGAWLRINVKDSGVGIAPEDQ-ERI 696 Query: 739 FNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F F + + G+R GVGLGL+I I GG + ++S+ + C +P Sbjct: 697 FAEFQRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLP 749 >gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1] gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1] gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 1035 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] Length = 889 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 6/240 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ++ E+AL E ++ + K+ F+ ++S+E+R+P+ I+G LL+ +N Sbjct: 506 DLTQQIKHEQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQ---PMN 562 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K + Y++ S+ L ++NDILD + ++AG + L L++L++ ++ + Sbjct: 563 DKSTDYLKKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQ 622 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E NI +K S + D R+ Q+F I+ NA+ F+ KG + D+ V Sbjct: 623 EKNIYLKFKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGGVTVEFKLTDDEQVCAIV 682 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP+++ +F RF R G GLGL I +S INL G + + +S+EGV Sbjct: 683 SDTGIGIPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKV-TSEEGV 741 >gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 968 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 3/231 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + +++KN FV VS+E+R+PLT I G ++L T L + Q ++ ++S LL L Sbjct: 738 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIAVSNSERLLRL 797 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682 VN+IL+L +D+G M+LN +N ++ + +++ +N+I I + D +A Sbjct: 798 VNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKILA 857 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + ++Q+ + +LSN++ FS G+ V + + + I +VK+ G +P +++F RF Sbjct: 858 DEETIIQVLTNLLSNSVKFSHAGTKVEIYVTMGDKEIIVAVKDYGKGVPPHKLETIFERF 917 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + Q+ G GLGL+I ++ + H G + + S + +T +P + Sbjct: 918 EQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLPQQ 968 >gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33] gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 1035 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 9/248 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ + +++ E+ L + EA KA+ K +FV ++S+E+R+P+ I+G LL Sbjct: 862 ARVIAFLTDISRRKETEQTLVQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVYLLS 921 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 G L+++Q ++ I S+ LLNL+NDILDL+ D G ++L S L L +V Sbjct: 922 Q---GRLSAQQQHQLDTIDRSARHLLNLINDILDLSKADVGKLQLALSDFDLARLPADVM 978 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +A + +++ + +D D RL Q +LSNA+ F+ +G I + Sbjct: 979 GLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLSNAVKFTERGRIAISLSIDG 1038 Query: 716 NGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 ++ F V++ G IP ++ +F F RR G GLGL+I + L G Sbjct: 1039 EDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTRRYGGTGLGLAITKRLAELMG 1098 Query: 770 GHVSISSS 777 G V + S+ Sbjct: 1099 GAVGVESA 1106 >gi|320012334|gb|ADW07184.1| histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 593 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+A E K F +VS+ELR+P+ +++G LL + L+ +Q + V IS Sbjct: 208 LDEKSRQLREASEAKTRFWANVSHELRTPVNSVVGLARLLNDAGSDGLDEEQRRQVSLIS 267 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS LL LV+++LD+A ++G ++ + + + L +L +++ ++ + + + V + Sbjct: 268 ASGATLLALVDELLDVAKAESGRLEPHMAQVDLRAVLGQLRGTLKGYGAQGEVELSVATS 327 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD-FIFSVKNNGSSIP 731 G V D L +I +LSNA+ F+ G+ + A D GD +F+V + G IP Sbjct: 328 GL--PLVTDEVMLTRILRNLLSNALKFTEHGTVSLEVEAEDGPGGDHVVFTVTDTGIGIP 385 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ + +F F V H+ R G GLGL L GG + ++S T + R+P Sbjct: 386 EEEQQQIFEEFYQVRGPHQRGRSGTGLGLPYARRLTELLGGSLVLTSGPGQGTRVTVRLP 445 Query: 790 SKE 792 + + Sbjct: 446 AGQ 448 >gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062] gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062] Length = 767 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 3/240 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 ++T RAE L +A+ K+ ++ +S+E+R+PL +IGF+++++ + G L Sbjct: 513 DITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFSEVMQEERFGELG 572 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N + +Y I S + +L L+ND+LDLA ++AG M L + + D++NE + + Sbjct: 573 NVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADIINECVALLQPQA 632 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721 +E + I+ + + VAD + L QI +LSNA+ F+ G VI+ D NG+ Sbjct: 633 NEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIVSLVLDPNGEVHL 692 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780 V++ G + + ++ F G GLGL + ++ + + SI+S DEG Sbjct: 693 RVRDTGHGMSKADLEAALQPFRRLNASASTEGSGLGLPLTKALVEANRASFSINSEEDEG 752 >gi|329765398|ref|ZP_08256978.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138304|gb|EGG42560.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 606 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 5/238 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK E +K D K+ F+ +++EL++PL I G++D+L + LG L +Q + + I +S Sbjct: 360 EKEELAKKTDIAKDEFLAMITHELKTPLVPIQGYSDILLSEHLGKLTDRQKERINIIKSS 419 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL L++D+LD ++ G +++ T + + + EV +S + +NN IK IS+ K Sbjct: 420 SETLLALISDLLDAQKLELGQLRMKMETNNIKETITEVIESFTPQAQKNN--IKFISNLK 477 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 D R+ Q+ S ++ N+M VI + + SVK+NG IP D Sbjct: 478 DVYVEYDEDRIKQVLSNLIKNSMIAVEPEKGVIEITMVNYPQTVQVSVKDNGIGIPADKQ 537 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +++F +F V ++ G GLGL+I + I+ HGG + S T +P K Sbjct: 538 ENLFKKFYQVDTTLTREKSGSGLGLAICKGIIDTHGGEIFCKSIPRQETVFTFTLPKK 595 >gi|187777476|ref|ZP_02993949.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC 15579] gi|187774404|gb|EDU38206.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC 15579] Length = 469 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA+ + + + F+ +VS+E+RSP+T+I GF + + + KQ Y++ + Sbjct: 239 EAIEQVEINRRLFISNVSHEIRSPITSIKGFIGGILDGIVPA--EKQDYYLKLTYEETQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KLN I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 +AD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVIADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 513 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+V +RAE A +A A++ K+ F+ VS+ELR+PL I+GF+D+L G Sbjct: 218 VSVEQQLRAE-AQNRVADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 275 Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N +Q +YV + S LL++VN +LD++ ++AG +L + + + +A + Sbjct: 276 ENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILEPFDIASSVKSCESMLALQ 335 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + LG VAD++ + QI ++ NA+ F+ G V + AA +G Sbjct: 336 AKTKGLTLTSRIQRGLGEIVADQRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKL 395 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I D + FV + RR G GLGLS+V+ + LHGGH +I+S Sbjct: 396 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGHFAIASQPG 455 Query: 780 GVTTINCRI 788 T I I Sbjct: 456 EGTIITIEI 464 >gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 575 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 42/338 (12%) Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 W+T P + +A +R N +DL A + T +DE L +L L + V Sbjct: 266 WRTSRAIAEPVITVTQVAEQVARKPN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 319 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E + + L + E A + K+ F+ +VS+ELR+PL Sbjct: 320 ERT-----------------------KELEQAKELAEAASKAKSIFLANVSHELRTPLNA 356 Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG + LLK SL+ + + +E I+++ LL L+NDILDL+ ++AG M L Sbjct: 357 VIGLSQLLKDDAADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIF 416 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + L+N V ++ + +NN +++ D LG+ AD+ R+ Q+ +LSNA F++ G Sbjct: 417 DVVTLINNVVLTVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNG 476 Query: 706 STVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 S + L R+ DF+ F+V + G + +F F ++ G Sbjct: 477 S-IKLTVRREKEDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGT 535 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GLGL+I F + GG + + S +T +P +E Sbjct: 536 GLGLAISRHFCQMMGGEIIVKSQPGLGSTFTVYLPLQE 573 >gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513] gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94] gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1] gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1] gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94] gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 1035 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 2478 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA +L EK E L + K+ F+ ++S+ELR+PL +++ LL +K G+L++KQ +Y Sbjct: 1755 RARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEY 1814 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I AS LL+L+N+ILDL+ V+AG M++ IVL +L +++S + + Sbjct: 1815 ANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLSF 1874 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720 V + G D QRL Q+ +LSNA F+ +GS + +K A F Sbjct: 1875 TVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEVGTHFDHEVLRRS 1934 Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G I D + +F F R+ G GLGLSI L GG + Sbjct: 1935 RYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIQ 1994 Query: 774 ISSSDEGVTTINCRIP 789 ++S +T +P Sbjct: 1995 VTSEPGRGSTFTLYLP 2010 >gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas palustris CGA009] Length = 610 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 E+AL + +AD K+ F+ +S+ELR+PL IIGF+D++ + L ++ +Y Sbjct: 339 EQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYA 398 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+ S LL++VN ILD++ +++G ++ L +A K ++ I + Sbjct: 399 QLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLV 458 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + L V D + QI ++SNA+ F+ +G TV + AA + + V + G I Sbjct: 459 TRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGI 518 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 E+ K + + F QRR G GLGLSIV+S + +HGG + + S + TT+ + Sbjct: 519 AEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSL 578 Query: 789 P 789 P Sbjct: 579 P 579 >gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 574 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 42/322 (13%) Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 W+T P + +A +R N +DL A I T DDE L +L L + V Sbjct: 265 WRTSRALAEPVITLTQVAEQVARKSN----FDLRAPITT--DDEIGLLAKSLNRLIERVS 318 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E + R L + E A + K+ F+ +VS+ELR+PL Sbjct: 319 ERT-----------------------RQLQQAKELAEAASKAKSQFLANVSHELRTPLNA 355 Query: 587 IIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG + LLK + S +E I+++ LL L+NDILD++ ++AG M L T Sbjct: 356 VIGLSQLLKDDAVDIGASPDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLYPETF 415 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + L+N V ++ + +N + + D LG+ AD+ R+ Q+ +LSNA F++ G Sbjct: 416 DIITLINNVVLTVKPAIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKFTTNG 475 Query: 706 ---------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 T+ILK A G IF+V +NG + + +F F+ ++ G Sbjct: 476 KVTLTVKIDKTIILKEA-PFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKYGGT 534 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGL+I F + GG + ++S Sbjct: 535 GLGLAISRHFCQMMGGEILVNS 556 >gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 610 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610 E+AL + +AD K+ F+ +S+ELR+PL IIGF+D++ + L ++ +Y Sbjct: 339 EQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYA 398 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+ S LL++VN ILD++ +++G ++ L +A K ++ I + Sbjct: 399 QLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLV 458 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + L V D + QI ++SNA+ F+ +G TV + AA + + V + G I Sbjct: 459 TRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGI 518 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 E+ K + + F QRR G GLGLSIV+S + +HGG + + S + TT+ + Sbjct: 519 AEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSL 578 Query: 789 P 789 P Sbjct: 579 P 579 >gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 963 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 122/233 (52%), Gaps = 6/233 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ K+ F+ ++S+ELR+PL ++GF+ LL+ L L+ +Q + I+ S L Sbjct: 502 AAETANLAKSVFLANMSHELRTPLNAVLGFSSLLRKDPL--LSKEQRTNLNIINRSGEYL 559 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+ND+L++A ++AG ++L+ + + L L+ +V + + E +++ + + + Sbjct: 560 LALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSSEFPRY 619 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI ++ NA+ F+ +G + LK + V++ GS I + + Sbjct: 620 IRGDEARLRQILINLVGNAVKFTQQGGVTVRFGLKPNTTPAHLLIEVEDTGSGIAAEDQE 679 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV ++G GLGL+I F+ L GG V+++S + +P Sbjct: 680 KIFEPFVQVGEVAMQKGTGLGLTITRQFVQLMGGSVTLNSKPGSGSLFRVELP 732 >gi|224539091|ref|ZP_03679630.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus DSM 14838] gi|224519295|gb|EEF88400.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus DSM 14838] Length = 642 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 132/241 (54%), Gaps = 10/241 (4%) Query: 539 MLTFVN---VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 ++TF+ D + + +T KN+A +AD++K++F+ ++S+E+R+PL I+GF++LL Sbjct: 243 VITFIQRDITEDIIYQQNLITAKNKA-EEADKLKSTFLANMSHEIRTPLNAIVGFSELLT 301 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + ++ +Y + I +S ILL L+ DILDL+ ++ G + +N + L L +E+ Sbjct: 302 ETDDAE---EKFEYKQLIETNSEILLKLIGDILDLSKIEVGSIDINRQKLNLCQLCDELY 358 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +S ++ + +K+I+ D+ R +QIF+ +NA+ ++ +G V+ Sbjct: 359 RSFQQRIKNPKVTLKLINPYTKCVANFDKYRFMQIFTNFATNAIKYTPQGEIVMGYECMP 418 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 G VK++G IPE+ +F+RF Q G GLGLSI ++ + GG V Sbjct: 419 -GQVRIYVKDSGIGIPEEKKNRIFSRFEKLDTFAQ--GTGLGLSICKAIADATGGEVGFK 475 Query: 776 S 776 S Sbjct: 476 S 476 >gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 542 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T++ +A R L + E A K+ F+ ++S+E+R+PL ++G LLK++ Sbjct: 147 VDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNGVLGMLQLLKSA---PE 203 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ +Y+E L L++DILDL+ V+AG + ++ + L +L+ + Sbjct: 204 KEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPFDLLELMQNLTDLYRPSA 263 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716 + +++ + + + D RL Q+ + I+SNA+ F++ G + + Sbjct: 264 QQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFTNDGIIKVETYPLPHTTAGT 323 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +FSV + G IP+ + +F+ F+ S ++ +G GLGLSI + + L GG++SI Sbjct: 324 TKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGLGLSICKQLVELMGGNISI 383 Query: 775 SSSDEGVTTINCRIP 789 S TT+ IP Sbjct: 384 ESELGIGTTVYLCIP 398 >gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 525 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ GS + Sbjct: 238 EQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGS--HAVAV 295 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y +Y I S LLNL+N+ILDL+ ++AG +LN L ++ + + + Sbjct: 296 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRASSR 355 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + ++ D + QI +LSNA+ F+ +G + LK+ +G SVK Sbjct: 356 GITIHEVFEDEMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLSVK 415 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS IPED V F SN+ + +G GLGL I ++ I++HGG ++ S Sbjct: 416 DTGSGIPEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKS 469 >gi|83955167|ref|ZP_00963823.1| probable sensor/response regulator hybrid protein [Sulfitobacter sp. NAS-14.1] gi|83840496|gb|EAP79669.1| probable sensor/response regulator hybrid protein [Sulfitobacter sp. NAS-14.1] Length = 1064 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K DEIKN FV VS+ELR+PLT+I G L++ S ++ + + +E ++ L Sbjct: 695 KKIDEIKNEFVSTVSHELRTPLTSIKGALGLIEMSARDTMPASALRLIEIARNNADRLTT 754 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 +VNDILDL + +G + + S + LN++++ Q + +N ++ + + D + + Sbjct: 755 IVNDILDLEKISSGKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDI-NVA 813 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD R++Q+ + ++SNA +SS+G+ V +KA I V+N G +PE+ +F Sbjct: 814 ADWSRMMQVLANLMSNACKYSSEGTDVTIKAETIGDMAIVYVQNFGPGVPENFKNRIFQA 873 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 F S A R G GLGL+I + GG++ S G T Sbjct: 874 F-SQADGSDTRAKGGTGLGLNITRQIVWRQGGNIGFESKPSGTT 916 >gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 1179 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 11/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T R E L E A++ K+ F+ ++S+E+R+PL IIGFTDLL ++L Sbjct: 522 TIQDITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL- 580 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 N Q QY+ ++ S LLN +NDILD + ++AG +++N+S L ++ E I Sbjct: 581 --NETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKY 638 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 ++ + + + L ++ AD RL QI +L NA+ F+ G + A N + Sbjct: 639 QVQSKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTESGEIELKVEALTNPEL 698 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + FSV++ G I D +F+ F +R G GLGL+I + L + Sbjct: 699 PEIKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQL 758 Query: 773 SISS 776 + S Sbjct: 759 QVES 762 >gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] Length = 916 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 329 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491 >gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 718 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 130/251 (51%), Gaps = 9/251 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P+ + +N+TD+V E L + A+ K++F+ ++S+E+R+P+ I+G DL Sbjct: 181 PDGDVVSLALNITDTVLYENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADL 240 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + LG +Q +V+ I S LL ++ND+LD + ++A ++L +T ++E Sbjct: 241 LSETGLG---EEQRLFVDTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHE 297 Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711 V + + + +I + V D L + V D R+ QI + I+ NA+ F+ G +I + Sbjct: 298 VMRLLQPPARDKDIALLVDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISVT 357 Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 ++G D ++++ G IP +F F V + + G GLGLSI + + L Sbjct: 358 GTHEDGVCDLRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVEL 417 Query: 768 HGGHVSISSSD 778 GG + ++S + Sbjct: 418 MGGQIWVTSEN 428 >gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01] gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01] Length = 1000 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E A K++A+ KA + K+SF+ ++S+E+R+PL +IG +++L + SL + Q YV Sbjct: 326 EDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDYVG 381 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS +LL+L+NDILD + +++G++ ++ + + + + ++ ++ K E I +KV Sbjct: 382 TIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIDLKV 441 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726 IS + D RL Q+ +SNA+ F+ KG S + N FSV+++ Sbjct: 442 SISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDS 501 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I E K++F F + R+ G GLGL+I + L GG + + S Sbjct: 502 GIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLES 553 >gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB] gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB] Length = 1214 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 134/248 (54%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ER L+ E R+ E + F+ ++S+E+R+PL +IG LL +KLG ++ Sbjct: 557 ERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLGE---REM 613 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +YV+ I + +LL +VND+LD + +DAG M+L S+ L+DLL+ + + T+ E N+ Sbjct: 614 EYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQEKNL 673 Query: 668 RIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FS 722 ++ V++ + D RL QI ++SNA+ F+++GS TV + A + + I F Sbjct: 674 VLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIELEFR 733 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 +++ G + + ++F F R+ G GLGL+I + I + GG + S + Sbjct: 734 IQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSVPQV 793 Query: 781 VTTINCRI 788 +T + R+ Sbjct: 794 GSTFSFRV 801 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGF DLL + L +Q Q+V+ I +S T LL++++DIL Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDL---TPEQQQFVDAIQSSGTTLLSIIDDIL 875 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 + + ++AG +L + I + + E +A K+ E I + + D + S + DR RL Sbjct: 876 NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935 Query: 688 LQIFSKILSNAMDFSSKGST-----VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740 QI +LSNA+ F+ +G V A +G + FSV++ G IP++ +F Sbjct: 936 HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRLFE 995 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F V + + G GLGLSI + GG + + S+ EG T Sbjct: 996 SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGST 1040 >gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 637 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 145/281 (51%), Gaps = 9/281 (3%) Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNS 571 +L G L+ +D+ +E +P + + D+++ L + NE L+ D +K+ Sbjct: 354 ALHGKLDSRADTEVEVDFKEIP-----VGLNEILDALKKNSDELRKANEELKSLDRMKDE 408 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +VS+EL++PLT I G+T+LL K+G LN +Q + + ++ L LV+ +L L+ Sbjct: 409 FLSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQIEVQNKVVRNAERLKRLVDSLLYLS 468 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 + A ++ + T+ + +++ + + + I +++ + L D+ +L + Sbjct: 469 KIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGIELEMNLEEDLPKINGDKDKLTDMI 528 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ 750 + I+ NA+ F+ G V + + + GD VK+ G IPEDM ++F RF +A R + Sbjct: 529 TNIVDNAIKFTPSGGKVTVTSFKKEGDIHIVVKDTGIGIPEDMIDNLFQRFYQLDASRTR 588 Query: 751 RR-GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + G GLGL I + H G + +S EG T ++ IP Sbjct: 589 KYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEMHIEIP 629 >gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 807 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 12/263 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT+L +VT+ E L + ++E K+ F+ VS+E+R+PL ++G LL+ Sbjct: 263 QTVLR--DVTERRLIEEELLAARHSAETSNEAKSRFLATVSHEIRTPLNGVLGMAALLRD 320 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++L +QS Y++ + S LL L++++LD + V+AG + ++ + I + L V + Sbjct: 321 TRL---TKEQSAYIKALETSGETLLLLIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVE 377 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +A K H ++ I + D +L V D R+ QI ++ N + F+ G + R Sbjct: 378 LLAPKAHAKHLEIGTLIDSRLPEHVTLDATRVRQILFNLIGNGVKFTDDGGVAVELHGRP 437 Query: 716 N---GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 N G F+ V++ G D + +F F H R+ G GLGL+I + +L G Sbjct: 438 NLEGGSFLDLVVRDTGIGFAADEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMG 497 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G +S + EG +P E Sbjct: 498 GGISARPASEGGALFEVSLPIPE 520 >gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 910 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 7/239 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R E+ L +A A K++F+ +S+ELR+PLT IIG++ LL+ + Sbjct: 372 VQERRRIEQELIRARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQLVDKGIYE 431 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + V I A+ LL L+NDILD++ ++AG M ++ + DL+ + ++ +M + Sbjct: 432 TVAHDVRRIRAAGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQMEK 491 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD--FI 720 N+ R+++ +G +D ++ Q +LSNA F+ G TV L R D G F Sbjct: 492 NHNRLQLHCPPDIGMLNSDATKVRQALINLLSNAAKFTENG-TVTLTVTRYEDEGRLWFR 550 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+V + G IP D +F F + ++ + G GLGL++ + L GG +++ S+ Sbjct: 551 FTVADTGIGIPPDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQST 609 >gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740] gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes] Length = 538 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 16/263 (6%) Query: 529 SIIPLPNAQTMLT-FVN----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +++PL + +T F+ +T +RA+ AL + +AD +K F+ ++S+E+R+P Sbjct: 228 TVVPLMDENNQITQFLGLCYEITSLIRAQNALRVALKRAEEADRVKGVFLANMSHEMRTP 287 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L IIGF LL +LN +Q +YVE I S LL ++NDILDL+ +++G +L Sbjct: 288 LNGIIGFGRLLLEE---NLNQEQREYVEIIDKSGEHLLGIINDILDLSKIESGKFELESL 344 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702 + L++ L V K E +++ + G + D RL Q+ + +L NA+ F+ Sbjct: 345 PMKLSEELRAVADFCEVKAREKGVKLLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFT 404 Query: 703 SKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 +G V +L+ + FSV + G I + + +F F R G G Sbjct: 405 PEGGEVRLGVEVLEEREEAIALDFSVSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTG 464 Query: 756 LGLSIVESFINLHGGHVSISSSD 778 LGLSI + + L GG + S + Sbjct: 465 LGLSISQELVRLMGGEMRCQSEE 487 >gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4] Length = 916 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491 >gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 966 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A A + K+ F+ +S+E+R+P++ ++G +LL + L +Q Y + I Sbjct: 286 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTQTIY 342 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++N+ILDL+ ++AG L L D L V +A K + + + ++ + Sbjct: 343 RSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLE 402 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729 L ++ D RL Q+ +++NA+ F+ G +I R D+ + F++++ G Sbjct: 403 PNLPRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRVTPRVISQDHINIYFAIEDTGMG 462 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 I +++ +F F S+A Q G GLGLSI + +NL GG + + S +E Sbjct: 463 ISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEE 514 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGF DLL + L +Q Q+V+ I +S T LL++++DIL Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDL---TPEQQQFVDAIQSSGTTLLSIIDDIL 875 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 + + ++AG +L + I + + E +A K+ E I + + D + S + DR RL Sbjct: 876 NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935 Query: 688 LQIFSKILSNAMDFSSKGST-----VILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFN 740 QI +LSNA+ F+ +G V A +G + FSV++ G IP++ +F Sbjct: 936 HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRLFE 995 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F V + + G GLGLSI + GG + + S+ EG T Sbjct: 996 SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGST 1040 >gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 503 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 122/218 (55%), Gaps = 4/218 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL +E++ F+ +VS+ELR+P+T+I GF + + + ++ +Y+ +S + L Sbjct: 265 ALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPP--EREREYLSIVSDETKRL 322 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L ND+LDLA +++G MKL + T +N+L+ + ++ NI+I+ + Sbjct: 323 SRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEAAHV 382 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD+ + ++ +L NA+ F G +I++ G + SVK+NG+ I + +++ Sbjct: 383 YADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMSKGKVMVSVKDNGAGIDSEEIGLIWD 442 Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 RF S+ RG+ + G GLGL+IV++ IN HG + + S Sbjct: 443 RFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVES 480 >gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19] Length = 757 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 157/338 (46%), Gaps = 17/338 (5%) Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSRYYNESDGWDLF 500 ++VFG DG I+ +PA L L+ G ++R+I T + + + G D Sbjct: 267 ISVFGLDGAIEYLSPAVEKLLGFTPAELT-GRNVRDIVLPEDYPVTRAAFASYVRGGDWS 325 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560 A + K QG + L S A+ ++T+ E AL + Sbjct: 326 AVPRVQYRARHK--QGHIVWLEASPRAMLGPDGKIAKLQDVVRDITERKAVEAALEDAMV 383 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A E K+ F+ +S+ELR+PLT+IIGF+ LL+ + + +Y + I +S L Sbjct: 384 DANAAAEAKSQFLATMSHELRTPLTSIIGFSALLREV---VESEEPRRYSQRIWTASQGL 440 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+NDILD + ++AG ++L+ + N+L+ EV + + H + + V +D + Sbjct: 441 LALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPLM 500 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739 + D R+ QI + NA+ F+ G I R GD + +V + G I + K +F Sbjct: 501 LLDEVRMRQILINLAGNAVKFTGDGGVTIALHWR--GDRLQVTVTDTGPGISPEGHKRLF 558 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 RF H G GLGL I + + L GG + + SS Sbjct: 559 KRFSQVDH--TTNGTGLGLMICKQLVELMGGRIGVESS 594 >gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 807 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L E+ +S+ K+ Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP++ K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785 >gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1006 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 10/223 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ +I+G D+L ++L S+Q YV S LLNL+ Sbjct: 496 ANRTKSEFLAQMSHEIRTPMNSILGMADMLTDTRL---TSEQRNYVSIFRDSGKALLNLI 552 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 +DILDL+ +++G + L ++ ++DL++EV ++ + N+ D SF D Sbjct: 553 DDILDLSKIESGKLTLEHTKFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGD 612 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFS--VKNNGSSIPEDMCKSVF 739 R+ QI +LSNA+ F+ GS V I + G I + V+++G I E+ K +F Sbjct: 613 PTRIKQILVNLLSNAIKFTDSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIF 672 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 FV R+ G GLGLSI + + L GH+ + + G Sbjct: 673 ENFVQADSSTTRKYGGTGLGLSITRNLVELMNGHIDVRNVSSG 715 >gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 1038 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 670 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 707 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 708 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 767 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 768 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 827 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 828 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 887 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 888 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 947 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 948 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1007 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1008 EANRAQFAIDSNPGQGTVVEIVFPP 1032 >gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 771 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L + ++D +K F+ ++S+E+R+PL I+GF+ LL S + +++++++ Sbjct: 526 ENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ +S +LL L+NDILDL+ +++G M +Y + L+ L+ ++ + M E ++I+ Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729 V + + +D RL Q+ + ++NA+ F++KG I + + D + SVK+ G Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D + VF RF Q G GLGL+I +S ++ G +S+ S Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747 >gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 982 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ RAE L E A+ K+ F+ ++S+E+R+P+ +IG T LL + L Sbjct: 445 DVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---GLA 501 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y E + S+ LL +++DILD + ++AG +++ L LL+++ +S+A K + Sbjct: 502 DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKAN 561 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720 E + + ++ F + D RL Q+ + NA+ F+ +G +V + + GD + Sbjct: 562 EKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVK 621 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+V++ G IP + + +F +F R+ G GLGL+I + + + GG + ++S Sbjct: 622 LRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTS 681 >gi|298241540|ref|ZP_06965347.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554594|gb|EFH88458.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 680 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 107/409 (26%), Positives = 179/409 (43%), Gaps = 60/409 (14%) Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 + D++ + + L + +D L GV V GP R+ ++N A +LW E R P Sbjct: 293 ARADMDARLHVLQSI----LDRLPNGVFLVQGPQLRLLMANDAAAALWGAEWPRGQP--- 345 Query: 480 IRNIAATCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSII----P- 532 + + G LF A DD L G + S + Y + P Sbjct: 346 --------QEEFLQQQGIHLFNANGQPLPMDD----LTGARAMASGEPVLYRQLGIRRPD 393 Query: 533 ---LPNAQTMLTFVNVTDSVRAERALT--------------EKNEALRKADEIKNSFVQH 575 LP + F N++ R + +T + AL++A+ +K+ F+ Sbjct: 394 GTRLPVVVDAIPFTNLSLLPRLPQEMTPALPSAERVVLVVYQDVSALKEAETLKDQFISL 453 Query: 576 VSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 ++ELR+PLT + G+ D L K L+ Q + V+ + +S L +L D+LD+ Sbjct: 454 ATHELRTPLTIVAGYADRLLIRAARGKEHGLDEWQREKVQEMKQASWQLASLTEDLLDVT 513 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 + AG L + L DL +V Q + ++ + ++ + +L + V D R+ Q+ Sbjct: 514 RMQAGQFALERRSTDLVDLTRKVIQRLQATTDKHQLDVQA-APPQLWATV-DTFRIEQVL 571 Query: 692 SKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAH 747 S +LSNA+ +S G V+L+ + + F +++ G IP +F RFV NA Sbjct: 572 SNLLSNAIKYSPGGGPIEVMLEEHAETHEARFRIRDQGMGIPRAQQAHLFGRFVRAENAR 631 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIPSK 791 RG GLGL + I HGGH+ S+EGV ++ C P+ Sbjct: 632 AAGIRGTGLGLYLCRELIERHGGHIDF-ESEEGVGSTFFFSLPCHEPAP 679 >gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2] gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein C-term [Methanococcus maripaludis S2] Length = 614 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ D +K+ + VS+ELR+PLT I+G+ +LLK G L+ KQ +++ IS +S Sbjct: 382 DELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDR 441 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L + +++ DL TVD I+ + I L +N++ +S NI + + D Sbjct: 442 LKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVL--LEDVDNLD 499 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D+ ++ Q+ S ++ NA+ FS K + V + D G+ + + G IP++ +F Sbjct: 500 IKGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIF 559 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F + ++ + + G GLGL++ + + HGG + + S TT++ P Sbjct: 560 DKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFP 611 >gi|225863934|ref|YP_002749312.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225790705|gb|ACO30922.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 459 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 227 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 285 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 286 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 344 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 345 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 401 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 402 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 458 >gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 837 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 FV+VTD AE+A E +A +A +K+ FV ++S+ELR+PL +IIGF ++LG Sbjct: 577 FVDVTDFRAAEQATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGF------AELGH 630 Query: 602 LNSKQS-QYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L S++S Q+ E I ++ +L LVND+LD+A +++ + ++ I L L+ + + Sbjct: 631 LRSRKSPQFSEMFNDIHSAGQRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARE 690 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDN 716 + H+ I +++ + AD R Q+ +L+NA+ FS G ++ D+ Sbjct: 691 LEPLQHQKQIDLRLDLENFPMIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDH 750 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 G+ + G IP +F FV S+ + G GLGL+I I+ G +S Sbjct: 751 GNICIDFSDQGPGIPPQELDQIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTISAK 810 Query: 776 SSDEGVTTINCRIPSK 791 + +G +PS+ Sbjct: 811 NKPDGGAIFRITLPSR 826 >gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ RAE L E A+ K+ F+ ++S+E+R+P+ +IG T LL + L Sbjct: 445 DVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---GLA 501 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y E + S+ LL +++DILD + ++AG +++ L LL+++ +S+A K + Sbjct: 502 DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKAN 561 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720 E + + ++ F + D RL Q+ + NA+ F+ +G +V + + GD + Sbjct: 562 EKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVK 621 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+V++ G IP + + +F +F R+ G GLGL+I + + + GG + ++S Sbjct: 622 LRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTS 681 >gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1022 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D ER + E +A ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + + + S+ Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +++ ++ + D+ R+ Q+ + ++NA+ ++ +G+ + D G Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ V++ G IPE+ + VF+RF Q G GLGLSI ++ GG V S Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851 >gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1242 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 152/301 (50%), Gaps = 21/301 (6%) Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNE 560 ++++ E ++G LE+ +D +Y I P +A+ +L V N+ S + AL ++ E Sbjct: 799 LLSARAGEESRVEG-LEMGAD---DYLIKPF-SARELLARVRTNLELSRLRKDALAQQAE 853 Query: 561 ALRK---------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R+ A+ +K+ F+Q +S+E+R+PL ++G+ +L+ KL S S ++ +E Sbjct: 854 RIREQAARVEAEAANRMKDEFLQVLSHEIRTPLNGMLGWVKMLRQGKLDS--SATTRALE 911 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ LV+D+LD++ + G ++L + L ++ E +++ + +I I Sbjct: 912 TIERNANAQAKLVDDLLDVSCIIRGQLRLEKRPVSLISVITEAIETLKPQAEAKDITINC 971 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + D + S D RL Q+ +LSNA+ F+ G V + D + VK+ G+ I Sbjct: 972 MLDRYVSSVSGDASRLQQVAWNLLSNAIKFTPSGGQVEVSLQAVGTDALLQVKDTGNGIK 1031 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 D +F RF R G+GLGL+IV + +HGG V S G+ T R+ Sbjct: 1032 ADFLPYIFERFRQADASTTRTYGGLGLGLAIVRHLVEMHGGTVEADSPGLGLGATFGVRL 1091 Query: 789 P 789 P Sbjct: 1092 P 1092 Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 8/239 (3%) Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+ S+R +A E K +AL + D K +F +VS+E R+PLT I+G + + ++ Sbjct: 405 QVSVSLRNAQAYEEERKKAQALAELDRTKTAFFNNVSHEFRTPLTLILGPLEDVLNNQNA 464 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L S++ + ++ + +S LL LVN +LD + ++A ++ Y I L E+ + Sbjct: 465 RLTSEEREQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVYEPIDLAVFTTELASVFRS 524 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + +R+ V + DR+ +I +LSNA F+ G + + R +++ Sbjct: 525 TIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFTFIGQISV--SLRWYTEYV 582 Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP + +F RF V G G+GLS+V+ I LHGG + +SS Sbjct: 583 ELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLSLVQDLIRLHGGSIRVSS 641 >gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395] gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1092 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 9/243 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +A R L + ++K F+ ++S+E+R+P+ +IG DLL ++L N Sbjct: 562 DITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNGVIGMVDLLSQTQL---N 618 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +V I SS LL ++NDILDL+ ++AG MK+ + + ++V + + + Sbjct: 619 PEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITEVKSVFDKVLNLFSQQAN 678 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721 + +I + D ++ ++ D R++QI S + SNA+ F+ K V+L +++ D ++ Sbjct: 679 QKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKEGKVLLHISKEIKDNLYR 738 Query: 722 -SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777 +V++ G I E+ + +F F V N+ G GLGL+I + +L GG + +SS Sbjct: 739 IAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAISKQLSSLMGGQIGVSSEP 798 Query: 778 DEG 780 DEG Sbjct: 799 DEG 801 >gi|254460709|ref|ZP_05074125.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206677298|gb|EDZ41785.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 522 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 167/380 (43%), Gaps = 31/380 (8%) Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228 L+ + +++ELA L N +++ K + ++ F VW G + W+N Y+ Sbjct: 136 LNHNDVHNELA-------PLPN-LALVKSVSENAPFPVWQSKADGSLGWSNAFYQS---- 183 Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSF 286 + ++ +LF EI + M ++ ++ + ++ NN++ + + R Sbjct: 184 ---LNRRVAHNQDQLF--EITETMDANDGAQR-----IKLRDNTNNRTHWFDVTRQCFED 233 Query: 287 GEAGIAIDVS---KEITVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342 G AIDV K T T + +L +AIFD+NR L N S +L ++ Sbjct: 234 GYVNFAIDVHAVVKAETAQRNFVQTLAKTFAHLATGLAIFDRNRQLVLFNPSLFDLTDLR 293 Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTL 400 FL T P+ + LR +PE ++ W+E I V S + +TWHLPNG T Sbjct: 294 PEFLTTRPNLFSFFDQLRDKQIMPEPKSYANWRERIADVITAASDDNFSETWHLPNGLTY 353 Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460 V +P G ++FE+++ ++ L ++ V +D L + +A+F G ++ N Sbjct: 354 RVTGRPHPDGAIAFLFEDISAEISLTRRFRDEADVTHSALDALDQAIAIFNRAGFVQYHN 413 Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520 A RSL + ++ +R++ C R S W + + ER++ L+ Sbjct: 414 SAMRSLIGQQSDKDLEDMCVRDVTRLCQRTCKPSPVWGEIRNFVIE-NAERETWSAPLQS 472 Query: 521 LSDSVLEYSIIPLPNAQTML 540 L + PL + +++ Sbjct: 473 KDGQTLALKVSPLASGASLI 492 >gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1022 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D ER + E +A ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + + + S+ Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +++ ++ + D+ R+ Q+ + ++NA+ ++ +G+ + D G Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ V++ G IPE+ + VF+RF Q G GLGLSI ++ GG V S Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 17/257 (6%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +RA+ L K + L A K+ F+ ++S+ELR+PL +I+ + LL +K G+L+ KQ++ Sbjct: 660 LRAQEQLKLKAQELESASRYKSEFLANMSHELRTPLNSILILSQLLSHNKEGNLSPKQTE 719 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 I++S LL L+N+ILDL+ V+AG ++L+ + L +++++++ E + Sbjct: 720 AASAINSSGADLLRLINEILDLSKVEAGKVELHLEEMPLTSMISDLQRVFKGVAVEKGVA 779 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------- 718 V D L + + D RL Q+ +LSNA F+ GS V L +R + Sbjct: 780 FLVEQDPALPETMLTDTHRLQQVLRNLLSNAFKFTDHGS-VTLSISRPGPEVDLPEGIPS 838 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +V + G IPED ++F F R+ G GLGLSI L GG + Sbjct: 839 AEEAICIAVTDMGIGIPEDKQGTIFEAFRQADGSTSRKYGGTGLGLSISRELTKLLGGEI 898 Query: 773 SISSSDEGVTTINCRIP 789 + S + +T + +P Sbjct: 899 RLRSQEGKGSTFSLILP 915 >gi|163793573|ref|ZP_02187548.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181375|gb|EDP65890.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 950 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 181/394 (45%), Gaps = 25/394 (6%) Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 + + +++ ++ E V+ + ++ +++G A+FGPD R+ + N F + + Sbjct: 559 VIVLRDISARIGAEAAARQAVERLRDAVERITDGFALFGPDRRLVICNARFVDMLGEAGS 618 Query: 473 RLSPGTH---IRNIAATCSRYYNESDG----W--DLFAAII-TSFDDERKSLQGTLELLS 522 PG I A SR + G W + AA+ TS R+ L G Sbjct: 619 TARPGGRYDVIMECYAETSRAPVSAVGRGRDWVAERTAALAETSEPAVRECLDGRW---- 674 Query: 523 DSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 + I P A+ L + ++T+ E +T+ + A K+ F+ ++S+EL Sbjct: 675 -----FRIDERPTAEGGLVCVYTDITELKHREMEITQAMISAESASSAKSEFLANMSHEL 729 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 R+PL +IGF DL+K G L +YVE I S + LL+++ ILD + + Sbjct: 730 RTPLNAVIGFADLMKQELFGPLGHDHYREYVEDIIGSGSKLLSMIEVILDFSRSEQVGQS 789 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + LND++ V + ++ + NI + V D L D L QI +LSNA+ Sbjct: 790 DSDARCALNDVVGAVVRDLSPIALQKNIDVSVDRDETLPPLNVDGAILYQILQNLLSNAI 849 Query: 700 DFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756 FS+ G+ + L+ R +G SV ++G IP+++ V F R GVGL Sbjct: 850 KFSNPGAPIGLRTFRAADGSAGMSVTDHGVGIPDELIDKVTQPFWQRQGPLVRDHDGVGL 909 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 GL+IV+S + GG + S TT+ +P+ Sbjct: 910 GLAIVKSHTDALGGELKFDSQVGRGTTVTILLPA 943 >gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1022 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 130/233 (55%), Gaps = 6/233 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R L + ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 625 DITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE---Q 681 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + + + S+ ++ Sbjct: 682 GDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVT 741 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ ++ + D+ R+ Q+ + ++NA+ ++ +G+ + D G ++ V Sbjct: 742 NPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIRLY-V 800 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G IPE+ + VF+RF Q G GLGLSI ++ GG V S Sbjct: 801 RDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851 >gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] Length = 931 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKTS L+ Q Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSENQQDYLQTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 ++NDILD + ++AG + L D L+EV +A HE + I + D ++ S Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILK-AARDNGDFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ KG+ +V LK A D D F V++ G I E Sbjct: 400 IGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + I+ GG + +SS Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSS 501 >gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 927 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 614 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 16/234 (6%) Query: 555 LTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L KNE L +A E K+ F+ VS+ELR+PL IIGF++LL +KLG L+ +Q Sbjct: 361 LRSKNEQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQI 420 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + I S+ LL L+NDILDL+ V+AG M+ L L+ EV+ I N+ Sbjct: 421 EVMGDILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNL 480 Query: 668 RIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVK 724 V++ VA D R Q+ LSNA+ F+ G +V ++ AR+ F V+ Sbjct: 481 ---VLATEVPEDLVAHLDPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVE 537 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I + +F F + N+ + +G GLGL++ + GG V++ S Sbjct: 538 DTGIGIAAEEIPRLFQEFSQLPNSRKAD-QGTGLGLALTRHIVEAQGGSVTVRS 590 >gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 811 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 130/254 (51%), Gaps = 6/254 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ A+R + E + +A K+ F+ ++S+ELR+PL IIGF++L G Sbjct: 554 ALTDITEFREADRTMREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSELGMVR--G 611 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + + I A+ +L LVND+LD++ +++ + + L L+ EV + I Sbjct: 612 RAHERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDP 671 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718 + + + + +S+G L + V D R Q+ +L+NA+ FS G T+ ++ D Sbjct: 672 LLARRRLHLDLALSEGPLVAKV-DPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQ 730 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +V+++G IP + +F FV S+ + G GLGL+I + HGG + ++ Sbjct: 731 IVVAVRDHGPGIPPGELEKIFEAFVQSSKTKDGSGGTGLGLAICRKIVEAHGGSIQAENA 790 Query: 778 DEGVTTINCRIPSK 791 D G + +P++ Sbjct: 791 DGGGSRFTIAVPAR 804 >gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 463 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ ++ +R L E E +++ +K++F+ ++S+E+R+PL IIGF+DL+ + Sbjct: 203 LLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 262 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ +Y+ +++++ +LL L++DILDL+ ++AG M +Y+ +N+L+ ++ + Sbjct: 263 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQM 319 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717 K ++I DR RL Q+ +++NAM F+++GS + R NG Sbjct: 320 QQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAEGSITL--GYRLNGQ 377 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D + VF RFV N+ +G GLGL+I I GG + + Sbjct: 378 KNELYFFVKDTGIGIPADKAEKVFERFVKLNSF---VKGTGLGLAICRVIIERLGGTIGV 434 Query: 775 SSSDEGVTTINCRIPSKE 792 ++ E R+P +E Sbjct: 435 DTAVEEGACFWFRLPVQE 452 >gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1022 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D ER + E +A ++D++K++F+ ++S+E+R+PL I+GF+DLL S+ Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y L + + + S+ Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +++ ++ + D+ R+ Q+ + ++NA+ ++ +G+ + D G Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ V++ G IPE+ + VF+RF Q G GLGLSI ++ GG V S Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851 >gi|229090988|ref|ZP_04222212.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42] gi|228692389|gb|EEL46124.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42] Length = 444 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855] gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 807 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L E+ +S+ K+ Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP + K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 731 YVRDTGMGIPRNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785 >gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1219 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 14/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L ++ + L + K+ F+ ++S+ELR+PL +++ + LL +K G+L+SKQ +Y Sbjct: 523 KARVQLEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSSKQIEY 582 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S + LL ++++ILDL+ VDAG MK+NY + L D+ V+Q+ A +I + Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMKINYEDVQLPDIEAFVEQNFAAVASRKHINL 642 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDN--------GD 718 V I + S V D R+ QI +LSNA F++ GS + KA +D D Sbjct: 643 GVHIEEDIPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELQVEKADKDKLPVYLNAESD 702 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 ++ F+VK+ G IP D +F F R+ G GLGLSI L GG +++ Sbjct: 703 YVAFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGITVE 762 Query: 776 SSDEGVTTINCRIPS 790 S + + +P+ Sbjct: 763 SEEGKGSCFTLFLPA 777 >gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1128 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 17/254 (6%) Query: 536 AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 Q M + +TD +RAE +AL + +A +A + K F+ ++S+E+R+P+ I+G T Sbjct: 363 GQIMGIYAILTD-IRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRTPMNAILGMT 421 Query: 592 DL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 L L+T LN +Q ++E + A+ + LL ++NDILD + ++AG +++ +++ ++++ Sbjct: 422 HLCLQTD----LNERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIEKTSLKMDEV 477 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708 L + ++ + E I + D L V D RL Q+ ++ NA+ F+ +G V Sbjct: 478 LASLADLMSIRADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALKFTEQGEVVV 537 Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 ++++A FSVK+ G + + ++F F RR G GLGL+I Sbjct: 538 RIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGTGLGLAISHR 597 Query: 764 FINLHGGHVSISSS 777 + L GG + + S+ Sbjct: 598 LVQLMGGVLKVEST 611 >gi|332293070|ref|YP_004431679.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus 4H-3-7-5] gi|332171156|gb|AEE20411.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus 4H-3-7-5] Length = 1216 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 140/254 (55%), Gaps = 10/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R L E ++D +K++F+ ++S+E+R+P+ I+GF++LL+ + Sbjct: 827 DITQQKLLSRELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNISE-- 884 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ Y+E I LL+ +++I+D++ +++ I+ ++ S + LN ++ ++ K+ Sbjct: 885 EKRDIYLELIEKEGHRLLSFISNIVDISKIESNIIHIDNSRVNLNIIIKDIYSKYLLKLE 944 Query: 664 ENNIRIKVISDG--KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + +++ +I G SF+ D +L+QI S +L NA+ F+ +G T+ + + Sbjct: 945 NSGVKL-IIEMGLDDADSFIETDENKLVQIISNLLENAIKFTKQG-TIEFGYSLYEKNLK 1002 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F VK++G I E+ K++F+RF + R Q GVGLGLSIVE I L G V I S Sbjct: 1003 FFVKDSGIGIEEEEQKNIFDRF-TQGRREQTHNLGVGLGLSIVEGLIKLLNGEVWIDSQI 1061 Query: 779 EGVTTINCRIPSKE 792 +T IP K+ Sbjct: 1062 GEGSTFFFTIPYKK 1075 >gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 635 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+E K++F+ ++S+ELR+PL I+GF+++++ +G+ + + Y + S T LLN+ Sbjct: 382 QANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMIGNDIDRYASYAADVHKSGTHLLNI 441 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILD+ ++AG ++L+ I L+ L++ + ++ + + + D Sbjct: 442 VNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDVQSQALAGGVLLAAPARNLGVVLRGD 501 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF 742 + +L QI +LSNA+ F++KG +++ A + +G +++ G + D + F Sbjct: 502 KGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDGGLCVKIRDTGIGMSGDEIRQALELF 561 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V N + G GLGL + LHGG +++ S T ++ R P+K Sbjct: 562 RQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVDSIPGEGTEVSVRFPAK 612 >gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 624 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 20/267 (7%) Query: 532 PLPNAQTMLTFVNVTD--SVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PLP L V + D +RA + L E EA + + K+ F+ ++++E+R+P+ I+ Sbjct: 83 PLPGHGHSLRRVLLRDLTPLRAAKTKLEEAREAAKAGERAKSHFLANITHEIRTPMIGIL 142 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G T+L ++ L+ KQ +Y+E S+ LL ++NDI+D A ++ G +L + L Sbjct: 143 GMTELAMATE---LSPKQREYLEMARHSAQSLLTVLNDIVDYARIETGAFELARTPFSLR 199 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707 + + EV + + + G + + V D RL Q+ ++ NA+ F+ GS Sbjct: 200 ETVEEVISVFRPLAAKKGLSLTYRCIGAVPQTLVGDPSRLRQVLINLVGNAVKFTDAGSV 259 Query: 708 VILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLG 757 V+ A A D F V++ G IP D K++F+ F VS A R Q G GLG Sbjct: 260 VLAVARIGGGQANDQTRLRFEVRDTGIGIPGDKIKAIFDSFTQADVSPARRYQ--GAGLG 317 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTI 784 L+IV + + G ++ +S+EG ++ Sbjct: 318 LAIVRQLVEMMQGSYNV-ASEEGKGSV 343 >gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01] gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01] Length = 632 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 127/219 (57%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ IIG + LL + L+ +Q ++VE I +SS L+ ++ Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSSHSLMTII 296 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 +DILD + V+AG ++L Y++ L +LL++V + K + N+++ D L V D Sbjct: 297 DDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSNIDPHLPIEVQGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD---FIFSVKNNGSSIPEDMCKSVF 739 RL Q+ + +LSNA+ F+ +G +L A +R +G+ F V ++G I ++ +++F Sbjct: 357 ATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAKEHQQAIF 416 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RF R+ G GLGL+I +NL GG + ++S Sbjct: 417 ERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTS 455 >gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 383 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 118 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 177 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 178 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 237 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ G+ ++ + + +F V+++G Sbjct: 238 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 297 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 298 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 347 >gi|228914596|ref|ZP_04078205.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933304|ref|ZP_04096160.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826465|gb|EEM72242.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844915|gb|EEM89957.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 444 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 792 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R E LT A+E K++F+ +S+E+R+P+ ++G T +L+ + Sbjct: 398 DVTEYKRLENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGVLGLTQILEKE---ITD 454 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ I +S L++++NDILD++ ++ + L +S + ++L+ VK + + Sbjct: 455 PNHREVLQLILSSGNHLVSILNDILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCS 514 Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + +VI + F+ D RL QI ++ NA+ F+ KGS VI G F Sbjct: 515 EKGLLFEVIDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQKGSIVISVEVNVGGMCRFE 574 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G I D SVF +F R+ G GLGLSIV+S + L GG + + S Sbjct: 575 VKDTGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGR 634 Query: 781 VTTINCRIP 789 +T +P Sbjct: 635 GSTFTVLLP 643 >gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata IAM 12614] gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata IAM 12614] Length = 808 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 12/263 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT+L +VT+ E L + ++E K+ F+ VS+E+R+PL ++G LL+ Sbjct: 268 QTVLR--DVTERRLIEEELLAARHSAESSNEAKSRFLATVSHEIRTPLNGVLGMAALLRD 325 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++L +QS Y+E + S LL L++++LD + V+AG + + + + + L+ V + Sbjct: 326 TRL---TKEQSAYIEALETSGETLLLLIDEVLDFSKVEAGKLDIQAAPVRVGALVESVVE 382 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714 +A K H ++ I + D L V D R+ QI ++ N + F+ +G + R Sbjct: 383 LLAPKAHAKSLEIGSMLDPNLPEEVTLDATRVRQILYNLIGNGIKFTDEGGVAVELTGRS 442 Query: 715 --DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D G F+ V+++G E + +F F H R+ G GLGL+I + L G Sbjct: 443 NPDGGGFLDIDVRDSGIGFDEQEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAGLMG 502 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G ++ + +G +P E Sbjct: 503 GEIAAQPAGDGGAQFRVSLPIPE 525 >gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 1780 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 139/259 (53%), Gaps = 15/259 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SL 602 + T E AL + ++A+ K++F+ ++S+E+R+P+T ++G+TDLL +G Sbjct: 1374 DFTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIRTPMTAVLGYTDLL----IGMEQ 1429 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++++Y++ I + LL ++NDILDL+ ++AG ++++ + LN++L +++ + + Sbjct: 1430 EQEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEISQESFSLNEMLADLQSMMRVRA 1489 Query: 663 HENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719 E N+ I+ ISD D +RL QI ++SNA+ F+ GS V++ R+ D Sbjct: 1490 EEKNLEFGIEFISDLP-ERIETDPKRLRQILLNLISNAIKFTETGSVKVVINFLREKADA 1548 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F V + G I +F F R G GLGL+I + + G++S+S Sbjct: 1549 VLKFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGTGLGLAISQRLAGMLNGNISVS 1608 Query: 776 SSDEGVTTINCRI--PSKE 792 S +T +C I P +E Sbjct: 1609 SKPGEGSTFSCTINLPVRE 1627 >gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1195 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 18/250 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ + + AL + E A+ K+ F+ ++S+E+R+P+ I+GF DLL Sbjct: 687 TITDITERKKYQEALEKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKK--- 743 Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +N ++S+ Y+E I+++ +LL+L+NDILDL+ ++AG +K+ Y +I L +++ E+KQ A Sbjct: 744 -VNDERSRRYLESITSAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFA 802 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 + + + + I D + D RL QI ++ NA+ F+ +G I LK+ Sbjct: 803 ETAKQKQLELLIDIDDNVPDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKS 862 Query: 718 D---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D S+++ G I ED + +F+ F + + R+ G GLGL+I + Sbjct: 863 DNHQKFSHCSLKISIEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTE 922 Query: 767 LHGGHVSISS 776 + G + + S Sbjct: 923 ILEGTIDLDS 932 >gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 497 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 9/247 (3%) Query: 553 RALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ E N+ + ++ ++ + V VS+E R+PLT+I GF D + + +Q +Y Sbjct: 245 QAVEETNKTIHEQKRLQALRQNLVASVSHEFRAPLTSIQGFVDAMLEGFIRE--EEQEKY 302 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ L LVND++DLA++++G ++L Y + L + S+ + E +I++ Sbjct: 303 LRVILNNTLHLNRLVNDLVDLASIESGYVQLRYEDVDPYTLAEKALDSVYPQAQEKSIKL 362 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNG 727 + + L + D RL QI +L NA+ ++ + L+A + D IF+VK+NG Sbjct: 363 EYNYEEGLPAIRGDGDRLYQILINLLENAITYTPDEGRIALEAQLSDDKEKVIFTVKDNG 422 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP ++ RF V A +G GLGL+IV +++H G V++ S+ + + Sbjct: 423 QGIPLAEIPYIWERFYKVDKARNRANKGKGLGLAIVRELVHMHNGEVAVKSTPGEGSAFS 482 Query: 786 CRIPSKE 792 IP +E Sbjct: 483 VIIPIEE 489 >gi|196047270|ref|ZP_03114485.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|196021895|gb|EDX60587.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 453 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 498 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 10/247 (4%) Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L E+NE LR+ A K+ F+ ++S+E R+PL I+G+T++L G + Q Sbjct: 248 LAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQK 307 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + ++ I ++ LL ++N+ILD+ ++AG M LN S L +LL EV + + + Sbjct: 308 RNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKL 367 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726 + +L +DRQ++ QI +LSNA+ F+ +GS + + + + SVK+ Sbjct: 368 VVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDT 427 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I ++ + +F F V ++ G GLGLSI + GG +++ S+ +T Sbjct: 428 GIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTF 487 Query: 785 NCRIPSK 791 +P + Sbjct: 488 TLHLPRR 494 >gi|52842393|ref|YP_096192.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629504|gb|AAU28245.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 828 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 162/320 (50%), Gaps = 30/320 (9%) Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSV----LEYSIIPLPNAQTMLT 541 + YY ++D + I S ++ GT + LS+ V LE II + + Sbjct: 207 TSYYKKADKIVMDKGISLSLEEPFYCPDGTTKEIYLSNKVPLRDLEGKIIGM-----LGV 261 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++TD + E L++ EA +A+ +K F+ ++S++LR+PL+ ++G +L+K Sbjct: 262 SVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQVTDP 321 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q QY E+I S LL+L++ ILD+ ++ + +L +T +N+ + E+ Sbjct: 322 V---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMP 378 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + + + V D K+ + DR +L +I +L NA+ F+ G I L+ + Sbjct: 379 SIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSGYIAIDVKLLELNNE 438 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR------GQRRGVGLGLSIVESFINLHG 769 +G F++ + G IPE+ +F+RF HR G+ +G G+GL IV+S++NL G Sbjct: 439 SGLIYFAISDTGIGIPENQQTKIFDRF----HRIIPSSIGKYKGHGVGLHIVQSYVNLLG 494 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + ++S TT +P Sbjct: 495 GEIQVNSEPGVGTTFYFELP 514 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++VT+ AE L ++ E A++ K+SF+ +S+E+R+PL +IG DLL + Sbjct: 582 SLIDVTERNEAE-VLRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCET--- 637 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +Q +YV S+ LL L+NDILD + ++AG ++L+ S L L+ +V A Sbjct: 638 DTDQQQGRYVSIAKNSAESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAH 697 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDN 716 + + + ++ S V D +RL QI ++ NA+ F+ G I AA RD+ Sbjct: 698 RAASKGLELSCHILPEVASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTRDH 757 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 ++ F V++ G IPED+ + +F F R+ G GLGL+I L GG ++ Sbjct: 758 EQWVRFEVQDTGVGIPEDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKIT 817 Query: 774 ISSSDEGVTTINCRIP 789 + S T + IP Sbjct: 818 VDSQLGSGATFSLEIP 833 >gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 494 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 6/259 (2%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P + F NVTD A E + A AD K+ F+ +VS+ELR+PL IIGF+++ Sbjct: 198 PERSAVAIFRNVTD---AHWRQDELDSAGTAADLSKDHFLANVSHELRTPLNAIIGFSEI 254 Query: 594 LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L + + +KQ +Y I S LL++VN ILDL+ + +G L+ S + L+ Sbjct: 255 LGDADQAPRDPAKQREYAAIIHRSGQHLLSVVNSILDLSKIHSGSFDLSPSHFGVAPLVE 314 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + +I +K + L V D++ QI +LSNA+ F+ V + Sbjct: 315 VCCDMVKLEAQDRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNAVKFTPAHGEVSISV 374 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770 + ++ + +V ++G I E + N F R G GLGLSIV + LHGG Sbjct: 375 SIEDETLLIAVADSGVGINEQDLARLGNPFFQARGALDRPFEGTGLGLSIVSGLVGLHGG 434 Query: 771 HVSISSSDEGVTTINCRIP 789 ++++S + T + R+P Sbjct: 435 SIAVASEPDQGTCVLVRLP 453 >gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 1035 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 561 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 10/247 (4%) Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L E+NE LR+ A K+ F+ ++S+E R+PL I+G+T++L G + Q Sbjct: 311 LAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQK 370 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + ++ I ++ LL ++N+ILD+ ++AG M LN S L +LL EV + + + Sbjct: 371 RNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKL 430 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726 + +L +DRQ++ QI +LSNA+ F+ +GS + + + + SVK+ Sbjct: 431 VVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDT 490 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I ++ + +F F V ++ G GLGLSI + GG +++ S+ +T Sbjct: 491 GIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTF 550 Query: 785 NCRIPSK 791 +P + Sbjct: 551 TLHLPRR 557 >gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 870 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 3/238 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + ++E Sbjct: 632 EEQLTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + +LL L+NDILDL+ +++G M ++ L L+ V S M + Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMPSGVRLVLK 750 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + V D RL Q+ + +++NA F+++GS + G V++ G I Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAAKFTTQGSITFGYTEEEPGYTSIFVEDTGKGIS 810 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + +F RF Q G GLGLSI ++ I G ++++S + T R+P Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866 >gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus DSM 14838] Length = 980 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R E+AL E +++ +K++F+ ++S+E+R+PL IIGF+ LL T++ Sbjct: 594 ITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTTE---DEH 650 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +++ I ++ +LL L++DILDL+ ++A + NY + LN L +V++++ ++ + Sbjct: 651 EREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRL-Q 709 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 N+ + I +R RL Q+ +L NA F+S GS R + F VK Sbjct: 710 PNVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFTSTGSITFGYEIRGE-ELYFYVK 768 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVT 782 + G I ++ +F RF Q G GLGLSI ++ I G + + S D+G T Sbjct: 769 DTGRGISQEDQNKIFERFTKVDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKDKGST 826 >gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 509 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 28/259 (10%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ ++ K FV +S++L+SP+T ++G DL++ SKLG + QS+Y+ S ++ Sbjct: 251 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVRESKLGPVTPDQSEYLNAAIESCEEMV 310 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++ +L + +AG MKLN+ L+N T IR+ L + Sbjct: 311 EMIDTLLGIHKFEAGKMKLNFREEDPVLLINRSAAKFQTPAQRGAIRLFTTLPASLPAIS 370 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD--------------------NGDF 719 ADR +I +LSNA+ F+ +G + + A +D G+F Sbjct: 371 ADRSLFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPQECYPGQELPSEGEF 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV-SIS 775 + V+++G IP++ S+F+RFV N +G+ RG GLGL+ ++ HGG++ + S Sbjct: 431 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAMDAHGGYIWAKS 490 Query: 776 SSDEG--VTTINCRIPSKE 792 EG T + +P +E Sbjct: 491 EPGEGSVFTVLFPALPEEE 509 >gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 865 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ IK+ F+ +S+ELR+PL I+G++ LL++ + + + ++ +E I ++T+ L+ Sbjct: 490 ANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQTQLI 547 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G + LN + L ++ ++ I+I+ + D +LG + D Sbjct: 548 EDLLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPELGQVMGDA 607 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 RL Q+ +LSNA+ F+S G TV LKA D V + G I + VF+ F Sbjct: 608 NRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQ--IQVIDTGKGITPEFLPYVFDYF 665 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV + LHGG V +S EG+ T +P Sbjct: 666 RQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQATSPGEGLGATFTVNLP 715 >gi|86147383|ref|ZP_01065696.1| sensor histidine kinase FexB [Vibrio sp. MED222] gi|85834811|gb|EAQ52956.1| sensor histidine kinase FexB [Vibrio sp. MED222] Length = 795 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL IIG + +L S+L + KQ Q Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S+ L N+ NDI+D+ D ++L + I D + E++ A + +R Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L S V D RL Q+ ++SNAM F+ G V+ +A +GDF V++ Sbjct: 381 DLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANITMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ + IN+ GH+ + +S+EG Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499 Query: 783 ---TINCRIP 789 TI+ R+P Sbjct: 500 STFTISIRVP 509 >gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1549 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 27/252 (10%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L +A K+ F+ ++S+ELR+PL +++ LL + G+L++KQ ++ Sbjct: 1081 ARQILEERAEQLSQASRYKSEFLANMSHELRTPLNSLLILAKLLSDNNEGNLSAKQVEFA 1140 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M + + I L L++ V+ + + N+ Sbjct: 1141 ETIHGAGSDLLQLINDILDLSKVEAGKMDVRPARIALVQLVDYVEAAFRPLAADKNLDFA 1200 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------------------- 710 V +S + D QRL Q+ +LSNA+ F+ G+ ++ Sbjct: 1201 VRVSPELPPTLHTDEQRLQQVLRNLLSNAVKFTDNGAVELMIRPVAGPEIPQHVREQLLE 1260 Query: 711 ---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESF 764 A D FSV + G IP D + +F F A G R G GLGLSI Sbjct: 1261 SGTMADPDEPLIAFSVADTGIGIPGDKLREIFEAF-KQADGGTSRKYGGTGLGLSISREI 1319 Query: 765 INLHGGHVSISS 776 L GG + + S Sbjct: 1320 ARLLGGEIHVES 1331 >gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 530 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 301 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y EY I S LLNL+N+ILDL+ ++AG +LN I L ++ + + + Sbjct: 302 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRASSR 361 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + + D + + Q+ +LSN++ F+ +G + LK +G SVK Sbjct: 362 GITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVK 421 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS IPE+ V F SN+ + +G GLGL I +S +++HGG ++ S Sbjct: 422 DTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKS 475 >gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27] gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27] Length = 916 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 9/243 (3%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L+ N L +A K+ F+ +S+ELR+PL I+ F++LL+ G +N +Q + Sbjct: 621 AERTADLSRTNAELNRALRTKDEFLATMSHELRTPLNGILSFSELLQEEISGPINEQQRR 680 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++YI +S LL L+NDILDL+ V+AG M+++ + ++ + + ++ Sbjct: 681 SLQYIESSGRHLLALINDILDLSKVEAGRMEIHSEIYSVVEICEASLLFVKELANRKGLQ 740 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726 + L D +RL Q+ +LSNA+ F+ G V+L+ D G F V + Sbjct: 741 VGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTPDGGQVLLEVTTDATAGVIRFVVSDT 800 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + + +F F + ++ Q G GLGL++V +L GG + + S EG Sbjct: 801 GIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLALVRRLADLMGGSIGVESDGEGQ--- 857 Query: 785 NCR 787 CR Sbjct: 858 GCR 860 >gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] Length = 1586 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 16/258 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TD + E+ L + +A + K+ F+ + S+E+R+PL I+G T LL SL Sbjct: 817 NITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + V+ I S LL +VND+LDL+ ++A M L + L + L EV +T+ Sbjct: 874 ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAE 933 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713 N+ K+ L +V AD RL QI + +LSNA+ F+S G I K A Sbjct: 934 AKNLDFKLEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWKGA 993 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 N FS+ + G I E+ K +F F RR G GLGLSIV + L G Sbjct: 994 EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGK 1052 Query: 772 VSISSSDEGVTTINCRIP 789 + + S + +T +P Sbjct: 1053 IGVESREGQGSTFWTDMP 1070 >gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 610 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 41/363 (11%) Query: 427 TKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN- 482 T L++ Q T +D LS+ VAV P G ++L+N R ++ LSP + I + Sbjct: 254 TDRARLLRTQRATQSALDTLSDAVAVCSPAGEVELANDTARRVFN-----LSPESTIESA 308 Query: 483 ----IAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533 I +R E G+D A + +ER L G + +L + ++ + Sbjct: 309 GNEKIGELFARVRREMRAVRHQGYD-SAIQVFREGEERFYLPGGIPILDE---DHQL--- 361 Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 A L +VT +R+ DE+K+ + VS+EL++PLT++ + Sbjct: 362 --AGITLVLTDVT--------------GVRRLDEVKSGLISTVSHELKTPLTSVRLAAHV 405 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + KLG LN KQ + + S L ++ ++LD++ ++ K+ S + ++ + Sbjct: 406 LLSEKLGPLNPKQVEILVAAREDSDRLYQIIENLLDISRIETDRSKIRLSPVDTEQMVLQ 465 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + + + + + + +A+ L +F+ +LSNA+ + G V + A Sbjct: 466 ATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVFANLLSNALRHTPAGGRVTVSAR 525 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 R FSV++ GS IP + VF +F R +RR GLGL+I + HGG + Sbjct: 526 RKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGPGREERRDSGLGLAIAREIVEAHGGTIG 585 Query: 774 ISS 776 + S Sbjct: 586 VVS 588 >gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] Length = 617 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D++K+ FV VS+E R+PLT+I +LLK +G++N Q + ++ I S L Sbjct: 383 LKEIDQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTINETQQELLKVIKEDSERLN 442 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ D+LDL+ +++G L + + ++ S+ N++I++ + G + Sbjct: 443 VLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRNVKIEIKNVGSSLFVL 502 Query: 682 ADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +++ + + +++NA+ + S + +I++A + + + SV++NG IPE+ + +F Sbjct: 503 ADINKIILVLTNLITNAIKYKSEEREGHIIIEAFKKEKNIVVSVEDNGRGIPEEYIEKIF 562 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 N+F V ++ G+ G GLGLSI + I HGG + + S Sbjct: 563 NKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDS 601 >gi|118477428|ref|YP_894579.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118416653|gb|ABK85072.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 11/239 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEY 612 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 234 SLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI-- 291 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 292 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKT 351 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 352 IERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGIA 408 Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 409 KEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 464 >gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 530 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 301 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y +Y I S LLNL+N+ILDL+ ++AG +LN I L ++++ + + Sbjct: 302 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRASSR 361 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + + D + + Q+ +LSNA+ F+ +G + LK +G SVK Sbjct: 362 GITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVK 421 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS IPE+ V F SN+ + +G GLGL I +S +++HGG ++ S Sbjct: 422 DTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKS 475 >gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223] gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223] Length = 927 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 657 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/395 (26%), Positives = 171/395 (43%), Gaps = 70/395 (17%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-------TCSRYY 491 T D + +GV + G I N A ++ + + H +AA TC R Sbjct: 143 TFDSIKDGVCLVDTKGIILRCNLAITQIFCKPSHEILGCAHHNLMAAELGIGDGTCFRRA 202 Query: 492 NES-----------DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 E+ + W FA I DE +L G + +LSD Sbjct: 203 KETHQRQVLEFQSTERW--FAKTIDPVLDEHGTLTGAVFILSD----------------- 243 Query: 541 TFVNVTDSVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTN 586 +T+ RA L E+N+ L + A+ IK+ F+ +S+ELRSPL Sbjct: 244 ----ITERKRASALLQEQNDRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNP 299 Query: 587 IIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+G+ +L+TS+ ++ ++QY +E I ++ + L+ D+LD++ + G + LN + Sbjct: 300 ILGWAKILQTSR---QDAAKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPV 356 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L + +++ +I+I+ I + G + D RL Q+ +LSNA+ F+ +G Sbjct: 357 GLTFTIKAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQG 416 Query: 706 STVILKAARDNGDF--------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 V ++ R + SV + G I D VF+ F RR G+G Sbjct: 417 GQVEVRLERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLG 476 Query: 756 LGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 LGL+IV + LHGG + +S EG T + P Sbjct: 477 LGLAIVRHLVELHGGSIQAASPGEGQGATFTVKFP 511 >gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1296 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1039 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1098 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1099 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1156 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1157 QANGQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1216 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 1217 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVFSINS 1276 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1277 APNEGTLVEITFPSQ 1291 >gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017] gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017] Length = 735 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 4/235 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A + +++ K+ F+ +S+ELR+PLT +IG + L LG L KQ ++ I S L Sbjct: 362 AAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLLRWSLGPLTDKQRSCLQTIHDSGEHL 421 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDGKLG 678 L L+NDILD + V +G LN S L L+ ++ Q + K H+ ++ + + Sbjct: 422 LELINDILDFSHVQSGKATLNVSDFSLTTLVQQLLQVMRDKADAHQVQLKANLKIPPERD 481 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F+AD +R+ QI + NA+ F+ G V L+ + +F V++ G I + Sbjct: 482 RFIADLRRVQQILISLTDNAIKFTPMGGKVTLRVWVETNTVVFQVEDTGIGISSSQLPHL 541 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F +F + ++ G GLGL++ + + LH G + +SS + + ++P++ Sbjct: 542 FEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQGWIDVSSEEGQGSIFTVQLPNQ 596 >gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 409 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 140/244 (57%), Gaps = 12/244 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q +LT ++T+ +R L+ + E A+++K++F+ ++S+E+R+PL IIGF+ LL + Sbjct: 158 QMLLTIYDITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLAS 217 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++++ Y++ ++ ++ LL +V D+LDL+ +++G + +YS +NDLL + Sbjct: 218 T---DDDAEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHG 274 Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ ++ IK++ + ++ +++QR++QI + ++ NA+ F+ G I R Sbjct: 275 ILEIRL-KDKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFTQNGE--IRFGCR 331 Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +G D F V + G IP +F+RF H + G GLGL++ ++ + GG + Sbjct: 332 PHGETDVYFYVSDTGIGIPVGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQSLGGEI 389 Query: 773 SISS 776 + S Sbjct: 390 GVES 393 >gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 908 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 134/247 (54%), Gaps = 6/247 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN T + + L E + +D +K++F+ ++S+E+R+PL I+GF++L+ S+ + Sbjct: 524 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 582 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ T L + NE+ I K+ Sbjct: 583 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKI 640 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ ++ + G DR RL Q++ L+NA+ + G + + G I+ Sbjct: 641 TNPDVEFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCTKSGYIKMGYSIEREGIRIY- 699 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V+++G IPE++ + VF RF Q G GLGL+I + I GG V +S+ + Sbjct: 700 VEDSGVGIPEELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGS 757 Query: 783 TINCRIP 789 T IP Sbjct: 758 TFWAWIP 764 >gi|294054929|ref|YP_003548587.1| integral membrane sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614262|gb|ADE54417.1| integral membrane sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 449 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 27/287 (9%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSV----------RAERALTEKNEALRKADEIKNSFVQHV 576 +YS IPL + + F+ + +V R R + E +A+ KAD K F+ + Sbjct: 144 QYSGIPLGSDLYAMLFILIVIAVCIDLFIMNTRRNIRVIRESKQAIEKADRTKTEFLMLM 203 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELRSPL I+GF+ LL+ + +Q +Y+ YI SS LL+++ +L+ + + G Sbjct: 204 SHELRSPLNPILGFSSLLEEDI---EDPEQKRYLAYIKESSVRLLDMIEAVLEYSCLADG 260 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDG--KLGSFVADRQRLLQI 690 + L + L DL E++ + + + + + + K + DR R++Q+ Sbjct: 261 SVPLKPVCVALEDLCEEIQTHLLPGVEAKGLDWGFSCQALDEPADKAFTLTMDRDRVVQV 320 Query: 691 FSKILSNAMDFSSKGST-VILKAARDN----GDFIFSVKNNGSSI-PE--DMCKSVFNRF 742 +LSNA+ +S G V L+ D D ++++G I PE D F + Sbjct: 321 IRHLLSNAIRYSDSGRVEVELRVECDGVEGPADLFCRIEDSGPGIAPEDADAVYEPFKQL 380 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + G+GLGL+ +NL GG +S + G T CRIP Sbjct: 381 DEDVSKRSGSGLGLGLATCSKLVNLMGGSLSHEPAKSGGTCFTCRIP 427 >gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 252 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNLVN 625 K+ F+ +S+ELR+PL I+GFT L++ S N S +++E I S LL L+N Sbjct: 2 KSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELIN 61 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 D+L+++ ++AG + LN + L LLN +++ + + + D + +++ AD Sbjct: 62 DVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYADE 121 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 Q+L Q + +L NA+ F+ +G ++ K D G F V++ G I +F Sbjct: 122 QKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFE 181 Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 F + R ++G GLGLSI + FI L GG + + SS+ G TI Sbjct: 182 PFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV-SSERGKGTI 225 >gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] Length = 998 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 22/252 (8%) Query: 544 NVTDSVRAERALTE------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596 ++ S R ++AL E + E + IK+SF+ ++S+E+R+P+ I+G T L LKT Sbjct: 300 DLEKSERVKQALEEVSLANVEKERAKNESRIKSSFLANMSHEIRTPMNAILGMTALTLKT 359 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 LN KQ Y+ I S LL+L+N ILDL+ +++ + KL L+D+L EV Sbjct: 360 D----LNEKQKDYLTKIQLSGDNLLHLLNSILDLSKIESDMFKLEQRPFRLDDVLEEVFG 415 Query: 657 SIATKMHENNIRIKVISDGK-----LGSFVADRQRLLQIFSKILSNAMDFSSKG----ST 707 ++ + NIR+ GK L V D R+ QI ++ NA+ F+S+G + Sbjct: 416 TLGNSALDKNIRLLYTLQGKGLQSTLNRLVGDSLRVGQILKNLIGNAIKFTSEGHINLTV 475 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 +LK D FSV + G + +D + VF++F R G GLGLSI + + Sbjct: 476 KVLKQLDDQVTLQFSVSDTGIGMSKDQLQRVFDKFTQADSSTTRMFGGSGLGLSIAKELV 535 Query: 766 NLHGGHVSISSS 777 +L G + S+ Sbjct: 536 HLMEGDIHAHST 547 >gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] Length = 916 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491 >gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236] gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236] gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 927 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 519 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 130/239 (54%), Gaps = 2/239 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + N+ L+ D +KN F+ ++S+EL++PL +I G+ +L+ LG+LN +Q + V Sbjct: 280 KELEKVNDDLKSLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTLNEQQKKAVNI 339 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + +S L L+ +L ++ +++ ++ + + + ++++ V + ++ + + I+ Sbjct: 340 VLRNSERLRRLIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIENN 399 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L D+ RL + + ++ NA+ F+ +IL A + D VK+ G IP+ Sbjct: 400 VPENLPLINGDKARLSDMLTNLVDNAIKFTPSEGRIILNAYEEEDDLHIEVKDTGIGIPK 459 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ ++F RF +RR G G+GL I ++ + H G++ I S +E TT++ R+P Sbjct: 460 ELIPNLFQRFYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518 >gi|229132846|ref|ZP_04261691.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196] gi|228650673|gb|EEL06663.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196] Length = 438 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618 + + KA+++KN F+ +S+E+R+PLT I G+++ LKT + L ++ + + IS + Sbjct: 213 DKIEKAEQLKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTDEEVKVGMGIISGETD 270 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L++LV ++LD + + + L + L D+L E + K E I + +++ + Sbjct: 271 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKQIHL--VANLERV 328 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 V DR RL Q+F I+ NA+ +S++ STV ++A + G + V + G I ++ + Sbjct: 329 ELVGDRNRLKQVFLNIIHNAIKYSNEKSTVYIEATKSEGQAVIKVTDQGIGIAKEHLPFI 388 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F N H G G+GL+IV+ + LHGG +SI+S + TTI ++P Sbjct: 389 EQSFYQINNH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 437 >gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] Length = 1054 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 2/230 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ +++K F+ VS+ELR+PLT++ G L+ +LG + K + + +S L + Sbjct: 563 KRLEQMKTEFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQRNSERLAH 622 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+LD + AG + + + +L + + T E N+++ + S Sbjct: 623 LINDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKV 682 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D QRL Q+ + +LSNA+ FS G TV ++A + D SV + G IPED VF +F Sbjct: 683 DVQRLKQVLANLLSNAIKFSPDGGTVSIEATSTDTDITVSVVDQGPGIPEDFQHKVFQKF 742 Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 ++ Q+ G GLGL+I + GG + +++ T +P+ Sbjct: 743 AQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLPA 792 >gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 742 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 95 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 150 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 151 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 210 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + A D+ + F V++ G I E Sbjct: 211 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 270 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 271 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 312 >gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 775 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE AL E A K+ F+ +S+ELR+PL I+GF LL N Sbjct: 380 DITDRRAAEIALGTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDS----N 435 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q V +I + LL L+N++LD+A ++AG + LN + L +L+E ++ Sbjct: 436 AGQRPQVGHILRAGQHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAA 495 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I + + + S +ADRQRL+Q+ +LSNA+ ++ G V + A + S Sbjct: 496 DAGITLAPLPELAADSGVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLS 555 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G+ I + + +F F + G GLGL++ S + + G + + S+ + Sbjct: 556 VLDTGAGITAERLERLFKPFERLDADPRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGS 615 Query: 783 TINCRIP 789 +P Sbjct: 616 CFTLELP 622 >gi|83950383|ref|ZP_00959116.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens ISM] gi|83838282|gb|EAP77578.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens ISM] Length = 540 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 4/229 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ + +F+ +++ELR+PLT+I G LL G L + + LL L Sbjct: 296 EAEATRRNFMSMMTHELRTPLTSIKGAVQLLTAGTAGPLEPGVMSLLRIAENNGERLLGL 355 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILDL+ ++AG M+ + L L++E +S A + ++ S D Sbjct: 356 VNDILDLSKLEAGKMEFTMGRMDLRALIDEAIESDAGYATGLGVTLRCKSPETPLWVTGD 415 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 + RLLQ+ + ++SNA FS GS V + +AR NGD I ++ + G IPE +F F Sbjct: 416 KGRLLQVLTNLMSNAAKFSETGSQVEI-SARPNGDMIRVAISDRGPGIPEAARAGLFEPF 474 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +G+ +G GLGL+IV++ + H G V S TT +P Sbjct: 475 KQAGAQDKGRIKGTGLGLTIVKAIVEHHDGRVDFVSELGKGTTFYFDLP 523 >gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 842 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 13/269 (4%) Query: 535 NAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 NAQ +T FV+V++ AE A E +A +A +K+ FV ++S+ELR+PL +I+G Sbjct: 569 NAQGRITGVLSIFVDVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMG 628 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F +L G N + I + +L LVND+LD+A +++ + ++ L Sbjct: 629 FAELGGLRSRG--NPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRS 686 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ V + + + + I +++ D AD R Q+ +L+NA+ FS G + Sbjct: 687 LIRPVVRELEPQQQQKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRID 746 Query: 710 LKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINL 767 ++ D GD +V + G IP +F FV S+ R G GLGL+I I+ Sbjct: 747 VQGRIDEQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGSGGTGLGLAICRKIIDA 806 Query: 768 HGGHVSISSSDEGVT----TINCRIPSKE 792 G ++ S+ EG + T+ CR + E Sbjct: 807 MDGTIAASNRSEGGSLFRITLPCRTGASE 835 >gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1019 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612 AL E + A+ K+ F+ ++S+E+R+P+ I+GF DLLK G + + KQ Y++ Sbjct: 522 ALEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDA 577 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+A L++L++DILDL+ ++AG ++L Y + L LL E++Q + +++ Sbjct: 578 IAAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQIN 637 Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726 + + +A D RL QI I+ NA+ F+ GS I A++ D V + Sbjct: 638 FEPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADT 697 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I D + +F FV + + RR G GLGL+I +L GG +++ S Sbjct: 698 GIGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQ 750 >gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 1004 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 18/262 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F ++TD E+ + E +AD+ K F+ +S+ELR+P+ IIG +LL T++ Sbjct: 741 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE 796 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ Q Y+ + SS LL+++N+ILD + ++ G M LN+ I L LL V Sbjct: 797 ---LDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLF 853 Query: 659 ATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715 + K E + + + S + D RL Q+ ++SNA+ F+ +GS T+ ++ R Sbjct: 854 SAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITLNVEGLRR 913 Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768 G F VK+ G I ++ +F F S H R G GLGL+I + + L Sbjct: 914 TGTQEFTLAFQVKDTGIGIAPELQHQLFTSF-SQLHPSLNRKYGGTGLGLAISKKLVELM 972 Query: 769 GGHVSISSSDEGVTTINCRIPS 790 GG + + S + ++ IP+ Sbjct: 973 GGVIGVESRENVGSSFYFTIPT 994 >gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 511 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A + +EA R+A+E K+ F+ +S+ELR+PL I+GF++++ T LG L N Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LLNL+N+ILDL+ ++AG +L+ + L +++ + + + NI Sbjct: 302 EYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARSKNI 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I + + S AD + + Q+ +LSNA+ F+ G V +K G S+++N Sbjct: 362 TIGQQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDN 421 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IPE+ V + F S A + +G GLGL IV++ + H G + S Sbjct: 422 GPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRS 473 >gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1436 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 127/245 (51%), Gaps = 13/245 (5%) Query: 542 FVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 FV + VRAE R L E +A K+ FV ++S+E+R+P+ ++G +LL + Sbjct: 780 FVCIAKDVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNT 839 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L+ Q Y++ + S L++++NDILD + ++AG ++ + L+++L + Sbjct: 840 R---LDGVQRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAM 896 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAAR 714 ++ + + + D + + V D RL Q+ + NA+ F+++G + + R Sbjct: 897 MSMHAARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAEGEVAVSVGREKR 956 Query: 715 DNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 D D+ +F+V++ G + + +++F+ F+ RR G GLGL+I + L GG Sbjct: 957 DGRDWLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGE 1016 Query: 772 VSISS 776 + + S Sbjct: 1017 IGVES 1021 >gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 530 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 7/221 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A +A+ K+ F+ +S+ELRSPL I+GF L+ T S+Q+ ++ I + L Sbjct: 143 AAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATDSPPPTPSQQAS-IDQILRAGWHL 201 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+ND+LDLA +DAG + ++ ++ L+D+L E I T+ + IR+ Sbjct: 202 LELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIVTQAGQRGIRMTFPQGEAPCHV 261 Query: 681 VADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK-- 736 ADR R+ Q+ +LSNA+ ++ G+ + +A G SV + G + PE + + Sbjct: 262 RADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGRVRVSVSDTGPGLSPEQVGRLF 321 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 FNR A G G G+GL + + + L GG + + S+ Sbjct: 322 QPFNRLGQEA--GPEEGTGIGLVVAKRLMELMGGGIGVDST 360 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 10/270 (3%) Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 SI PL A T+ +++T+ AE +A A++ K+SF+ ++S+ELR+P Sbjct: 158 SITPLKGGDGGLAGTLAAAMDITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTP 217 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L IIG++++L+ + I ++ LL L+ND+LD++ ++AG M L Sbjct: 218 LNAIIGYSEMLQEEMEDLGQDDLIPDLAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVE 277 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + ++ +V +I+ + +N + V G++G+ AD ++ Q +LSNA F+S Sbjct: 278 AFEIAPMVADVVATISPLIQKNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTS 337 Query: 704 KGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 G+ + + R G++I F+V + G + +F F R+ G GLGL+I Sbjct: 338 DGTITL--STRRQGEWIEFAVADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAI 395 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F + GG ++++S TT R+P+ Sbjct: 396 SRTFCRMMGGDIAVASEPGRGTTFTVRLPA 425 >gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 771 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L ++D +K F+ ++S+E+R+PL I+GF+ LL S + +++++++ Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ +S +LL L+NDILDL+ +++G M +Y + L+ L+ ++ + M E ++I+ Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729 V + + +D RL Q+ + ++NA+ F++KG I + + D + SVK+ G Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D + VF RF Q G GLGL+I +S ++ G +S+ S Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747 >gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 886 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 129/254 (50%), Gaps = 4/254 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + V D AE AL E EA A+ K +F+ ++S+ELR+PL++I+ + L+ G++ Sbjct: 630 LEVCDRKSAESALREAKEAAEVANRAKKTFLVNMSHELRTPLSSILEIAEALQNEVYGTV 689 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q Q++ + +S LL L+N IL+L +++ ++L + + +L + + Sbjct: 690 TEEQRQFLNTLESSGKNLLELINQILELTDIESSKIELQLAATFIPELCDSSLSFVKNLA 749 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI 720 + NI++ V +L D +R+ Q+F +LSNA+ F+ G V ++ + N Sbjct: 750 LQKNIQLSVQIPEELEPIQVDERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNSTNEYIF 809 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV + G + D +F F+ + RR G GLGL +V+ + LHGG V S Sbjct: 810 FSVVDTGIGMLSDDLFRLFQPFIQVENASTRRSAGTGLGLVMVQKIVELHGGTVHAESQL 869 Query: 779 EGVTTINCRIPSKE 792 + ++P K+ Sbjct: 870 GKGSRFTVKLPWKK 883 >gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253] Length = 949 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G +IL ARD Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E IN+ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTIRIP 689 >gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 132/250 (52%), Gaps = 12/250 (4%) Query: 536 AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 A T +T +++T+S +E L EK + + ++ K++F+ ++S+E+R+P+ +IG T L Sbjct: 272 AFTDITSLHITNSQLSELNIELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSL 331 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L ++ SL +Q YVE I S LL+L+NDILD + +++G M+L L ++ E Sbjct: 332 LIST---SLTDEQQDYVETIRISGETLLSLINDILDFSKIESGKMELETQPFSLTSVIEE 388 Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 + K E + + + D + S + D RL QI ++SN + F+ KG +I Sbjct: 389 TYDLLTVKADEKGLDLLYLIDADVPSEIIGDVTRLRQILVNLVSNGIKFTEKGEILISIE 448 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 L+ A FSVK++G IP+D +F F V ++ + G GLGL+I + + Sbjct: 449 LLEKAGSIYTLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLAISQRLVE 508 Query: 767 LHGGHVSISS 776 G + S Sbjct: 509 AMQGSIRAES 518 >gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 690 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 6/240 (2%) Query: 544 NVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VT+ + + AL E + L + ++KN F+ ++S+ELR+PL I+ T+ + G Sbjct: 300 DVTERQQNQAALRTIEASTELERVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYGL 359 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN +Q Q ++ ++ S LL +VNDILD+ ++AG ++L + + + + + Sbjct: 360 LNDRQQQVLDVVTESGQHLLGIVNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQI 419 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720 + I+I D ++ AD +RL QI +LSNA+ F+ +G V L D + Sbjct: 420 AYAKRIQIASQIDHQVDLIEADPRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLV 479 Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + SV++ G I +F FV R RR G GLGL++V LH G V I S+ Sbjct: 480 YLSVEDTGIGIAHTDLPRLFRPFVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRIQST 539 >gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] Length = 818 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 123/512 (24%), Positives = 212/512 (41%), Gaps = 81/512 (15%) Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366 YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 176 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 235 Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 L E++ +S+ E H W P +GQ + + ++P G + + Sbjct: 236 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 286 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 287 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 342 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 343 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 398 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 399 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 440 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 441 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 497 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 498 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 557 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 558 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 617 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 618 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 649 >gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 1314 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 123/231 (53%), Gaps = 12/231 (5%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+E+R+PL +IG +LL T+ +L+ +Q++YV +S+ LL L+ND Sbjct: 598 QAKSAFLANMSHEIRTPLNGVIGMLELLGTT---TLDERQNRYVHIARSSAGTLLGLIND 654 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685 +LD + ++AG ++L L+ LL +V + + + +E + + I G + D + Sbjct: 655 VLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPE 714 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFN 740 R+ Q+ +++NA+ F+ +G VIL+A + SV + G IP D +F Sbjct: 715 RIRQVLINLVNNAIKFTKQGE-VILRAEQQVHSSGVSRMRISVIDTGIGIPADRSSQLFA 773 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F R+ G GLGL+I I L GG V + S + +T C +P Sbjct: 774 PFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVP 824 >gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 1000 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 10/303 (3%) Query: 498 DLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTM---LTFVNVTDSVRA 551 D AI + + R + E+ ++ +L ++ PL + + +V+ + R Sbjct: 692 DGRPAIRAALERARAGEPASTEVAAEGGEPILALTLAPLAQEEPRRFSVLLRDVSAARRT 751 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610 E L A A K+ F+ +S+E+R+PL I+GFT+++ + G + N + Y+ Sbjct: 752 EAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYL 811 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +S +++LV D+LDLA ++AG + L+++ +VLNDL+ + + + ++ Sbjct: 812 RDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVR 871 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSS 729 L + D++ L Q +++NA+ F+ G VI+ A D G V++ G Sbjct: 872 TSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIG 931 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + D ++ F V+ A + RG GLGL + ++ + + G + +SS T + Sbjct: 932 MTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVSSRKHEGTLVEVL 991 Query: 788 IPS 790 P Sbjct: 992 FPP 994 >gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 758 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 E+ + E +ALR A+ K+ F+ ++S+ELR+PLT IIG + L LN Sbjct: 362 EQRVIESTQALRDTLIASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQEGLNL 421 Query: 604 --SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ +Y++ I S LL+++N+IL+ + + +G L+ L + V Q ++ + Sbjct: 422 PVDKQRKYLDTIQNSGKHLLDMINEILEYSNLQSGKYVLSVRYFSLTKVAKNVMQRVSDE 481 Query: 662 MHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 N+ + + + + SF AD +R+ QI +L+NA+ F+SK V L+ + Sbjct: 482 SEHRRINLELDLQIEPQKDSFSADPERVQQILYHLLNNALKFTSKNGKVTLRVWLEKNQL 541 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V++ G I E+ +F F + N+ R G GLGL++ + + LHGG + + S Sbjct: 542 CLEVEDTGIGIEEEKIPLLFESFQQLENSRRRVYGGTGLGLALTKQLVELHGGTIEVESI 601 Query: 778 DEGVTTINCRIPSK 791 +T RIPS+ Sbjct: 602 INKGSTFTVRIPSQ 615 >gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ECD227] Length = 949 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G +IL ARD Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E IN+ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTIRIP 689 >gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] Length = 1091 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 27/311 (8%) Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPL-------PNAQTMLT--FVNVTDSVRAE 552 A++ +++ + L +++L D EY I L P + ML + V D RAE Sbjct: 500 ALMRRYEEGERELYMEMQMLGDDG-EYHWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAE 558 Query: 553 RALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +A E+ +AL A++ K+ F+ +S+++R+P+ IIG + + + K G+ N + Sbjct: 559 KARQERLLRDALTSAEAANKAKSEFLSRMSHDIRTPMNAIIGMSTIGQL-KAGAPNRVRD 617 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + E I +SS LL L+NDILD++ +++G + L ++ +NE+ I + E I Sbjct: 618 CF-EKIDSSSRYLLTLINDILDMSKIESGKIVLAKRKFDFSEFINEINTIIYPQTRERGI 676 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNG--DFIF 721 V + F + D RL QI +LSNA+ F++ G + I + R+NG Sbjct: 677 DFVVHHHEPMERFYIGDELRLNQIMMNLLSNAVKFTTPGGRITVDIRELKRENGLAYLGL 736 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + E+ K ++ F + G R G GLGLSIV + I L GG ++++S Sbjct: 737 SVSDTGIGMSEEFMKKIYQPF-EQENPGTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEK 795 Query: 779 EGVTTINCRIP 789 TT +P Sbjct: 796 NCGTTFELSVP 806 >gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1276 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1019 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1078 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1079 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1136 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1137 QANGQRVIIRTALSQAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1196 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + +I+S Sbjct: 1197 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINS 1256 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1257 APNEGTLVEITFPSQ 1271 >gi|52143444|ref|YP_083385.1| sensor histidine kinase [Bacillus cereus E33L] gi|51976913|gb|AAU18463.1| sensor histidine kinase [Bacillus cereus E33L] Length = 453 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1194 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 7/247 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + + EK E L + K+ F+ ++S+ELR+PL +++ LL + G+L++KQ +Y Sbjct: 509 KARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADNSSGNLSNKQVEY 568 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ T LL L+NDILDLA +++G + + I DL + +K++ + + Sbjct: 569 SQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKRTFQQVAQDKGLSF 628 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVK 724 + D +L S ++D +RL QI +L+NA F+ +G + L N I F++ Sbjct: 629 SIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGGVNLRIGLDQINTNHPMITFAIS 688 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP++ + +F F R+ G GLGLSI + GG + + S + Sbjct: 689 DTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQMLGGRLGLVSQPGQGS 748 Query: 783 TINCRIP 789 T +P Sbjct: 749 TFTLYLP 755 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E+ L E +A + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V I+ K Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 E I + D + + D RL Q+ + NA+ F+ +G VI R + Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F+VK+ G I ++ +FN F N+ Q G GLGLSI + + L GG +S+ Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816 Query: 775 SSSD 778 S + Sbjct: 817 HSEE 820 >gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1172 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ GS ++ + + F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 736 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L ++D +K F+ ++S+E+R+PL I+GF+ LL S + +++++++ Sbjct: 491 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 549 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ +S +LL L+NDILDL+ +++G M +Y + L+ L+ ++ + M E ++I+ Sbjct: 550 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 609 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729 V + + +D RL Q+ + ++NA+ F++KG I + + D + SVK+ G Sbjct: 610 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 667 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D + VF RF Q G GLGL+I +S ++ G +S+ S Sbjct: 668 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 712 >gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 771 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L ++D +K F+ ++S+E+R+PL I+GF+ LL S + +++++++ Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ +S +LL L+NDILDL+ +++G M +Y + L+ L+ ++ + M E ++I+ Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729 V + + +D RL Q+ + ++NA+ F++KG I + + D + SVK+ G Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D + VF RF Q G GLGL+I +S ++ G +S+ S Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747 >gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 745 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD +E AL + A+ K+ F+ S+E+R+PL I+G + LL + L N Sbjct: 213 DVTDRTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDTPL---N 269 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y + + S L++LV ++LD + ++AG + L + L ++ E+ + +A + Sbjct: 270 PEQAAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQ 329 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 I I D +L VA D RL Q+ + SNA+ F+S+G +I++ + F Sbjct: 330 ARQIEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGIWPNEISF 389 Query: 722 SVKNNGSSIPEDMCKSVFNRF-VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I D + +F F ++ H Q G GLGL+I E + GG +++ S Sbjct: 390 MVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPG 449 Query: 780 GVTTINCRIP 789 TT IP Sbjct: 450 EGTTFEVSIP 459 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E+ L E +A + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V I+ K Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 E I + D + + D RL Q+ + NA+ F+ +G VI R + Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F+VK+ G I ++ +FN F N+ Q G GLGLSI + + L GG +S+ Sbjct: 757 VMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816 Query: 775 SSSD 778 S + Sbjct: 817 HSEE 820 >gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891] gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891] Length = 565 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L+ EA +A+E + S FV +++ELR+PL ++G +LL ++L + +Q + Sbjct: 188 LSRHQEARSRAEESERSTKEFVAMINHELRTPLNGLLGSAELLDGTEL---DEEQRTLLT 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 ++ S +L +++NDILD + ++AG+M+L ST +++L N + + E I + Sbjct: 245 NLTHSGDLLRHIINDILDFSKMNAGMMELIPSTFQMSELRNMIHGIFEPRAREKGIEFTI 304 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 G+L SF+ D +R+ QI ++ NA+ F+S+GS V + A G SV + G I Sbjct: 305 TESGELPTSFIGDFERIGQILVNLVGNAVKFTSEGS-VTVTARWSAGSLTMSVSDTGVGI 363 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 E+ K +++ FV +R G GLGL+I ++ + L G +++ S Sbjct: 364 AEEAKKELYSPFVQADRTAKRHFEGTGLGLAICKNLVELMSGTIALES 411 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E+ L E +A + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V I+ K Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 E I + D + + D RL Q+ + NA+ F+ +G VI R + Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQINEQQ 756 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F+VK+ G I ++ +FN F N+ Q G GLGLSI + + L GG +S+ Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816 Query: 775 SSSD 778 S + Sbjct: 817 HSEE 820 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E+ L E +A + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V I+ K Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 E I + D + + D RL Q+ + NA+ F+ +G VI R + Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F+VK+ G I ++ +FN F N+ Q G GLGLSI + + L GG +S+ Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816 Query: 775 SSSD 778 S + Sbjct: 817 HSEE 820 >gi|239981307|ref|ZP_04703831.1| putative two-component system sensor kinase [Streptomyces albus J1074] Length = 574 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K+ LR A K F +VS+ELR+P+ +I LL + L +Q Q V I+ Sbjct: 175 LEDKSRRLRLASAAKTRFWANVSHELRTPVNAVIALAQLLLDAGAEPLTDEQHQQVSLIA 234 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL LV ++LD A ++G ++ L +L++++ ++A+ E ++ +++ Sbjct: 235 GSGNTLLALVEELLDTAKAESGRLEPQLVEADLRTVLHQLRGTLASTTAE-DVTLEIADT 293 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731 G FV D L +I +LSN++ F+++GS + A D +F+V + G IP Sbjct: 294 AFPGPFVTDEVMLTRILRNVLSNSLKFTTEGSVRLTVADERRADGPWAVFTVTDTGVGIP 353 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED + VF F V H+ G GLGL L GG ++++S T + +P Sbjct: 354 EDEIEQVFEEFYQVRGVHQRHVSGTGLGLPYARKLTELLGGRLTLTSRLGHGTRVVVELP 413 Query: 790 S 790 + Sbjct: 414 A 414 >gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 959 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 137/261 (52%), Gaps = 17/261 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++TDSV+A +AL + EA A K+ F+ ++S+E+R+PL ++G LL+T++ Sbjct: 557 FRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEVRTPLNGVLGMLQLLQTTEQ-- 614 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSI 658 +Q +Y+ S+ L L+ DILD++ ++AG I++ + T L + + E+ + Sbjct: 615 -TDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQIIEAEFFTACLQESIMEIFRPT 673 Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR 714 A E ++ D ++ + D R+ QI ++ NA+ F+ GS ++ A+ Sbjct: 674 A---REKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALKFTESGSVQVDAMVLPAK 730 Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770 ++G +F+V + G I ++ K +F FV R +G GLGL+IV + + GG Sbjct: 731 NSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQGAGLGLAIVRKLVRILGG 790 Query: 771 HVSISSSDEGVTTINCRIPSK 791 + I ++ TT+ +P K Sbjct: 791 EMVIDNTAGNGTTVYVSLPFK 811 >gi|239787346|emb|CAX83823.1| Sensor protein [uncultured bacterium] Length = 478 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 21/250 (8%) Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361 +DQ + +++ +L+ IAI+++N L+F N+++++L++ D +FLA +P+ ++L+ L S Sbjct: 246 DDQRKYFHDVCQHLSTPIAIWNENLSLEFSNKAYIDLFKFDPSFLAKHPNLSDVLDDLHS 305 Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRG-GTIWMFENL 419 KLPE N+ +K K+ T + HLPNG+ LH T P G I+++E++ Sbjct: 306 RQKLPEPSNFTLFKNKEIEAVKTLTTSVSEILHLPNGKILH--HTRFPLSTGIIFLYEDM 363 Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 T L+ + TL VQ TIDHL EGV VFG D ++L NPA + ++ R+ H Sbjct: 364 TDTYSLKQQNKTLTDVQKHTIDHLFEGVLVFGSDHCVQLFNPAVQEIFGL---RILERYH 420 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 + + ++ + + S R++ G + S + ++ PLP+ M Sbjct: 421 LNDFLRQTNQLLQD----------LPSVFSRRQACDGVIA----SDIRWAYTPLPDGSHM 466 Query: 540 LTFVNVTDSV 549 L FV +T + Sbjct: 467 LRFVTITHAA 476 >gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 497 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 4/213 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A +A+ +K F+ ++S+ELR+PL II FT L + G L ++Q + E + +S L Sbjct: 246 AADEANTLKTRFLANMSHELRTPLNAIINFTQFLGKPRYGDLTARQIELQERVLVNSEHL 305 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+NDILDL+ ++AG M+L+ + L + N V + + ++ + ++ Sbjct: 306 LGLINDILDLSKIEAGRMELHLELLDLQPIFNGVMATAVGLTKSKGLNLESDVEEEIPPV 365 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D+ R+ QI +LSNA F+ G + L+A +G SV + G+ IP VF Sbjct: 366 RGDKVRVRQILLNLLSNAAKFTDSGG-ITLRAFESDGMVQISVIDTGAGIPAHELPLVFE 424 Query: 741 RF--VSNAHRGQR-RGVGLGLSIVESFINLHGG 770 F V A QR +G GLGL I + L GG Sbjct: 425 EFHQVEQAASAQRQQGTGLGLPISRHLVELQGG 457 >gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 884 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 129/244 (52%), Gaps = 18/244 (7%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K F+ VS+ELR+P+T+I G+T LL LG +NS Q +++ I+ +S ++ + Sbjct: 637 ESDRLKTEFIGTVSHELRTPMTSIKGYTQLLAMGSLGEVNSTQKEFLNTIAHNSERMIAI 696 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+LD+ ++ G ++L + +++ D+++ V + ++ + + L + +D Sbjct: 697 INDLLDITKIETGSVELQMARLMVADVMSSVVGNARAEITQRQQEFSLSLAPNLPTIWSD 756 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------------FSVKNNG 727 +R+ Q+ S +LSNA+ ++ G + +KA N + I +V+++G Sbjct: 757 MERIRQVASNVLSNAIKYTPNGGKISVKAFEINFNDIPNKQREGLQVGRRYIALAVQDSG 816 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I + VF+RF N + + G GLGLS+V I L GG + + S+ TT Sbjct: 817 VGIDPSEHEKVFDRFYRTENPLKIEAGGTGLGLSLVRPLIQLMGGRIWLESAVNQGTTFT 876 Query: 786 CRIP 789 +P Sbjct: 877 FIMP 880 >gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] Length = 818 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 123/512 (24%), Positives = 212/512 (41%), Gaps = 81/512 (15%) Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366 YE +L +LT + + D++ L + N S L D + P D + R A Sbjct: 176 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 235 Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416 L E++ +S+ E H W P +GQ + + ++P G + + Sbjct: 236 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 286 Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471 +++++ + L ++ ++ + + G + RI NPA R ++ +E Sbjct: 287 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 342 Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510 N P + I N+ C R DG + A + S FD+ Sbjct: 343 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 398 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 D+ + S+ + V S+R R +A R+AD Sbjct: 399 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 440 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I S+ L +V DI Sbjct: 441 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 497 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD +++ G ++L+ + L ++N+V ++ + I + V D +RL Sbjct: 498 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 557 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ S +LSNA F+ +G V + R + +V + G I + VF F Sbjct: 558 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 617 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 A RRG+GLGLSIV LHGG V +S+ Sbjct: 618 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 649 >gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 522 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 40/327 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG ++++ + EYSI P A Sbjct: 194 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 253 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + ER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 254 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 313 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 314 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKKNFD 372 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 373 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVIQVISNFLTNAIKFTSEGE 431 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765 + L N + SV + G I +D C+++F+RFV NA ++G GLGL+I ++ I Sbjct: 432 -IKLAYKVSNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 487 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 GG + + S+ +T +P KE Sbjct: 488 EKLGGRIGVESTLGVGSTFWFTLPLKE 514 >gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 704 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D + E+ L E A A K+ F+ ++S+E+R+P+ +IG LL T++ L+ Sbjct: 309 DISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTE---LS 365 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q QY+E I S+ L+ L+ DILDL+ ++AG M L L + E+ S +++ Sbjct: 366 PEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQIN 425 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719 + I I I++ D+ R QI +L NA+ F+ G I L + +N Sbjct: 426 QKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENRVL 485 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +V + G +P D+ + +F F + RR G GLGL+I L GG + S Sbjct: 486 IHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAES 545 Query: 777 SDEGVTTINCRIP 789 EG +T + +P Sbjct: 546 GAEGGSTFHVELP 558 >gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 771 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L ++D +K F+ ++S+E+R+PL I+GF+ LL S + +++++++ Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I+ +S +LL L+NDILDL+ +++G M +Y + L+ L+ ++ + M E ++I+ Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729 V + + +D RL Q+ + ++NA+ F++KG I + + D + SVK+ G Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D + VF RF Q G GLGL+I +S ++ G +S+ S Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747 >gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1101 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E+ ++A +K+ F+ +S+E+R+P+ I+G T LK S L + +Q + ++ Sbjct: 581 EEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTGELKESHL---SGEQLKLLQ 637 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I A+++ LL ++ND+LD + +AG ++L + ++L +++E +Q +A ++ + IR Sbjct: 638 SIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVSEAEQIVAFQIRKQGIRFLT 697 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA-ARDNGDFIFSV 723 D + F+ D QRL Q+ +L NA F+ +G+ +L KA A D + F V Sbjct: 698 YMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLVHLQPGKAEASDQQELCFRV 757 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I E +F+ F + Q G GLGLSI + + + GG + S Sbjct: 758 VDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISKHLVGMMGGTIGFES 812 >gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1304 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+++SV+ L + A + K+ F+ ++S+E+R+PL +IGF+DLL + LN Sbjct: 654 NISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PLN 710 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q QY+ YI+ S LL+++NDILD + ++AG ++L + D+ N+V + + Sbjct: 711 ETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVLYQAQ 770 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 ++ + + I G S D R+ Q+ +L NA+ F+ G + L + D Sbjct: 771 RKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHGEIELKIEKLSSYNDKIT 830 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G IP+D + +F F +R G GLGL+I + +N + + S Sbjct: 831 LRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSKLQLKS 890 >gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1420 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 4/230 (1%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E +A+ K+ F+ +S+ELR+PL+ ++ LL+ + ++K + E I S Sbjct: 1016 QAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRRGTMD--DAKIKRASEAIERS 1073 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + + L++D+LD++ + G +++ + T+ L ++ +S++ + +I + D Sbjct: 1074 TKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDES 1133 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG D RL QI +L+NA+ FS++G V + R G V + G+ I + + Sbjct: 1134 LGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQ 1193 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +F+RF+ R G+GLGL+IV + LHGG V S +G I Sbjct: 1194 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1243 >gi|253567906|ref|ZP_04845317.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251841979|gb|EES70059.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 641 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L G+ +Q Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y + I +S +LL L+NDILDL+ ++A + L + + L +V S++ N Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725 + +SD + D QR+ Q+ ++SNA F+ KG + + + + +FSV + Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 G IP++ K VF RF Q G GLGLSI + ++ G + I S G Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626 >gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1032 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++ ERA +E E A+ +K+ F+ ++S+E+R+P+ +IG T LL+ ++L N Q + Sbjct: 381 LQTERA-SEMAEKAILAERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTEL---NETQQE 436 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YVE + S+ LL L+NDILDL+ ++AG M + + + DL +V A+ + Sbjct: 437 YVETMLNSTESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASNAQAKGVE 496 Query: 669 -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSV 723 + V +FV D RL Q+ + +LSNA+ F+ KG + ++ R++G I F V Sbjct: 497 LVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDGARIRFEV 556 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I ++ ++F F RR G GLGL+I + + GG + + S Sbjct: 557 VDTGIGIAPEVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQVES 611 >gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Bacteroides xylanisolvens XB1A] Length = 754 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%) Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 Y+ LP + T +N+ D E L E L + E+K SF+ ++S+E+R+P Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +I+GF ++L G ++++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ Sbjct: 547 LNSIVGFANILALED-GLSSAEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +L++++ + + + +K + D L DR+RL+Q+ + L+NA F+ Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNAGKFTE 664 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + D G+ V++ G IP + + +F+RF Q G GLGLSI + Sbjct: 665 TGYIKLGYSYLPDEGNVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722 Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790 I GG + + S + CR+ S Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754 >gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1358 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 14/253 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A++ + K + L + + K+ F+ ++S+ELR+PL +I+ + LL T+K G+L+ KQ + Sbjct: 656 AQKIVEGKVDELETSGKYKSEFLANMSHELRTPLNSILILSQLLSTNKAGNLSDKQVESA 715 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +S LLNL+NDILDL+ V+AG ++L I + ++ + H+ I Sbjct: 716 GAIHSSGAELLNLINDILDLSKVEAGKVELIIEEIPFKRIEADLHRLYKDLAHDKGISFD 775 Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718 + + +L + D QRL Q+ +++N+ F+ +GS + L R G Sbjct: 776 ITLNPQLPQTLKTDSQRLQQVLRNLITNSFKFTLQGSVSLEIEPAPAEQLLNTRLEGQKA 835 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F+VK++G IP+ +++F F V + + G GLGLSI + L GG +++SS Sbjct: 836 IVFAVKDDGIGIPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSISKELTKLLGGFITLSS 895 Query: 777 SDEGVTTINCRIP 789 ++ +T +P Sbjct: 896 VEDEGSTFRITLP 908 >gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1087 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 12/238 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAE + E A+ K F+ ++S+ELR+PL ++G +L + + + K + Sbjct: 696 RAEEGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMIEL---AGMSCADPKTHDF 752 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + S +LL+++ND+LDLA ++AG ++L L + L+ + +R Sbjct: 753 LRMAKDSGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRC 812 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFIFS 722 ++ D + V D R Q+ + ++ NA+ F+ KG + A D+ F Sbjct: 813 SLVVDQSVPEHLVGDLGRFRQVVTNLVGNAVKFTEKGEVNLSVMRIPHPFATDSVQIRFR 872 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 VK+ G IP+DM ++F+ F V ++ + G GLGL+I + +NL GG +S+ S + Sbjct: 873 VKDTGIGIPQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEE 930 >gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1514 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 134/241 (55%), Gaps = 7/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E + AD +K++F+ +S+ELR+P+ +IIGFT +L G LN +Q + + + Sbjct: 1274 LEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTGILLKQLAGPLNDEQKKQLTMVK 1333 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL+L+NDILD++ ++AG + + YS ++L + + + + ++IK IS Sbjct: 1334 SSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTEIS 1393 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VKNNGSSIPE 732 + + +D +R+ QI ++SNA+ FS+KG +I + G+F+ + + + G I Sbjct: 1394 NFDI-VIESDERRVEQILLNLISNAIKFSNKG--IISIKVKLEGNFVITKIIDQGIGIEA 1450 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 K++F FV RR G GLGLSI +S + GG + + S +T ++P Sbjct: 1451 KHIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLPL 1510 Query: 791 K 791 K Sbjct: 1511 K 1511 >gi|298387628|ref|ZP_06997179.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259484|gb|EFI02357.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 641 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L G+ +Q Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y + I +S +LL L+NDILDL+ ++A + L + + L +V S++ N Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725 + +SD + D QR+ Q+ ++SNA F+ KG + + + + +FSV + Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 G IP++ K VF RF Q G GLGLSI + ++ G + I S G Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626 >gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 613 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ D++K+ + VS+ELR+PLT+I G+ DLLK G LN KQ ++V IS +S Sbjct: 382 DELKEVDDLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKLNEKQKEFVSVISENSER 441 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678 L + +++ DL TVD LN LN + N V++ +++ H + R I ++ D Sbjct: 442 LKRITDNMSDLVTVDN--EHLNTKLDKLN-IKNAVEEIVSSLQHFADSRNIILLEDVDDL 498 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D+ ++ Q+ + ++ NA+ FS + V + DNG+ + + G IP++ V Sbjct: 499 YIKGDKSKIHQVLANLIENAVKFSKTQTKVTVTGYEDNGNIHLEITDQGPGIPKEYLDKV 558 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF +R+ G GLGL++ + + HGG + + S T ++ P Sbjct: 559 FDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTNVHVLFP 611 >gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] Length = 620 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 132/239 (55%), Gaps = 7/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E +A+++K++F+ ++S+E+R+PL I+GFT+LL+ K + ++ + I+ Sbjct: 385 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK-DLTDEEKDLFRNTIN 443 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +LL L+NDIL+L+ +++G M + LN+LL E+ Q+ M N +K + Sbjct: 444 KNSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPSNIRFLKEFQE 503 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPE 732 +L V DR R Q+ + ++NA+ F++KG ++ + + IF V++ G + E Sbjct: 504 SELIIHV-DRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIF-VEDTGKGMSE 561 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + K VF RF Q G GLGLSI ++ G ++++S + + IP + Sbjct: 562 EAQKKVFERFFKADEFAQ--GTGLGLSICQTIAERLDGRITLASQEGKGSCFTLIIPCR 618 >gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 842 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 5/220 (2%) Query: 563 RKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RKA + +KN F+ VS+ELR+PLT+I G LL+ +G + + V ++ L+ Sbjct: 346 RKAVERMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIPPQALDMVRIARTNTERLI 405 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDILDL ++AG ++L ST DL+ S+ + + G Sbjct: 406 RLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT-PQVK 464 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFN 740 ADR RL+Q+ + ++SNA+ FS +G+ V ++ ++G FSV + G I ++ +F Sbjct: 465 ADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQRARLFG 524 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF + ++ + G GLGL+I ++ + HG +++ S + Sbjct: 525 RFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEE 564 >gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 944 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 24/291 (8%) Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 SDG I D E + ++G EL+SD I L Q L +N Sbjct: 293 SDGQHCHTMIHYIPDMEGEQVRGFYELVSD------ITELKQTQFRLEELNT-------- 338 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL ++ E A+ K+ F+ ++S+E+R+P+ ++G LL+ ++L + +Q Y+E + Sbjct: 339 ALQQRTEEAEAANAAKSRFLANMSHEIRTPMNAVLGLLHLLQRTEL---SPRQHDYIEKV 395 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +S LL ++NDILD + ++A M+L +LLN + ++ + + + Sbjct: 396 QMASRSLLGILNDILDFSKIEADKMELETVPFFPQELLNNLAVFLSPSLQNKKVELLFDV 455 Query: 674 DGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728 D L + + D RL Q+ + NA+ F+ +G V ++ D FSVK+ G Sbjct: 456 DADLPPTLLGDALRLQQVLLNLTGNAVKFTEQGRIVVTIQVVSLTPDQARVRFSVKDTGI 515 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP D +SVF FV RR G GLGL+I + L GG + + S+ Sbjct: 516 GIPADKLESVFTGFVQAESSTTRRFGGSGLGLTISRRLVRLMGGELEVEST 566 >gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 995 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 20/370 (5%) Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473 + E +Q + E K Q ID L G+AV + +I+L N F L++ + E Sbjct: 119 IMEEEILQKEQEQKLMNSYAFQRSLIDWLDSGIAVTDCNKKIRLLNRKFYELFQLKGEID 178 Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533 G H ++ + N+ I ++R +++ + L Y+ PL Sbjct: 179 CHIGMHASDLHYLFDKEINK---------IKLENTEKRTKTTKEIKINTGMTLRYNCFPL 229 Query: 534 PNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 + F ++T+ + ER + + E K + K+SF+ +S+ELR+PL I+G Sbjct: 230 NEKNNFVGYLWEFEDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILG 289 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F LL+ + SLN +Q +V+ I + + LL+L+NDILD++ ++ G +K++ + L Sbjct: 290 FAQLLEMDE--SLNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLT 347 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK-GST 707 ++ E + + NI I D V AD RL QI +L NA+ ++ + G Sbjct: 348 VIKECINIVQPLAKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKV 407 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 ++ ++N +I V + G + VF F + G G+GLS+V+ ++L Sbjct: 408 IVFCRLQENKQYIHIV-DTGVGFSVEEYTKVFVPFY-RIENTKEEGTGIGLSLVKQLVHL 465 Query: 768 HGGHVSISSS 777 GG ++++S+ Sbjct: 466 MGGDINVTSN 475 >gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 931 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E+ L + D +K++F+ ++S+E+R+PL I+GF+DLL T + Sbjct: 685 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 741 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K+ Sbjct: 742 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 800 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 EN ++++ D L ++DR RL Q+ S ++NA+ F+S+GS + + G+ + Sbjct: 801 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 855 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +F RFV S H G GLGLSI +S + GG + + S Sbjct: 856 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 910 >gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1118 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ML V ++T AE L + E KAD+ K+ F+ +S+ELR+PL +IIGF+DLL Sbjct: 726 MLGVVQDITRRKEAEEHLIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLL--- 782 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L K+ V++IS S LL L+N +L+L+ ++ G ++L + +VL D ++ + Sbjct: 783 SMADLPEKEQHQVDHISESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLST 842 Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714 + + + ++ D K + AD +L Q+ LSNA+ ++ V+L A Sbjct: 843 VDPMAQKYLVELER-PDWKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLL 901 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773 + G SV + G IP+D +VFN + H G G+GL+I + + L GG + Sbjct: 902 ETGKVRISVTDTGYGIPKDKQSNVFNSYDRLGHESSTIEGTGIGLNITQQLVFLMGGDIG 961 Query: 774 ISSSD 778 SS + Sbjct: 962 FSSQE 966 >gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:CHASE3 [Pseudomonas syringae pv. syringae B728a] Length = 1172 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ ++ L+ ++ E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFT 595 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ GS ++ + + F V+++G Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 655 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|291534447|emb|CBL07559.1| EDD domain protein, DegV family [Roseburia intestinalis M50/1] Length = 891 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%) Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F+ +T S +R EK +A L A ++ F+ ++S+E+R+P+ IIG ++ T + Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ + I ++S +LL+L+NDILDL+ ++AG M++ + +L +E+ + Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718 + HE N+ V KL S + D R+ Q+ + ILSNA+ ++ KGS T+ +++ + D Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355 Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772 I +V + G I +D K +F+ F + G +G+ GLGLSI +NL GG + Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414 Query: 773 SISSSDEGVTTINCRIPSK 791 ++ S + +T IP K Sbjct: 415 TVDSIYQKGSTFTITIPQK 433 >gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708] gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708] Length = 613 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ L + +++KN F+ + S+E+R+PL++IIGFT LL + +Y+ I +S Sbjct: 222 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYEPERQRHQEYLHIIQSSGK 281 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+NDILDL+ ++A +++ + + ++ L V + K +++++ + + Sbjct: 282 HLLDLINDILDLSKIEANQLEVQWEIVEVSTLCRNVLALVKEKAANKGLKLRLEIENDVT 341 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + V D RL Q+ +L NA+ F++ GS V L+ + + FSV + G I ++ + Sbjct: 342 NLVVDPLRLKQMLLNLLFNAVKFTNLGS-VGLRVSIKDLYLRFSVWDTGIGISQENQTRL 400 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 F + + N G G GLGL + + +HGG++ + S+ D+G Sbjct: 401 FRPYSQIINPGAGSNEGSGLGLVVTQQLAEIHGGYLELESAIDQG 445 >gi|29346647|ref|NP_810150.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338544|gb|AAO76344.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 641 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L G+ +Q Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y + I +S +LL L+NDILDL+ ++A + L + + L +V S++ N Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725 + +SD + D QR+ Q+ ++SNA F+ KG + + + + +FSV + Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 G IP++ K VF RF Q G GLGLSI + ++ G + I S G Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626 >gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 1266 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 1009 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1068 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 1069 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1126 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 1127 QANGQRVIIRTALSHSVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1186 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 1187 VLRVRDTGIGMTRAELDHAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINS 1246 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 1247 APNEGTLVEITFPSQ 1261 >gi|126734383|ref|ZP_01750130.1| hypothetical protein RCCS2_09489 [Roseobacter sp. CCS2] gi|126717249|gb|EBA14113.1| hypothetical protein RCCS2_09489 [Roseobacter sp. CCS2] Length = 518 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 149/329 (45%), Gaps = 25/329 (7%) Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206 +QND A+ ++ + + + + S + EL L C + ++ + LV Sbjct: 108 SQNDPAVFVDVKHTDDRLRISLNSDEDWTRELVTLRLSCDASNAQTALMHGIAIHSTQLV 167 Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266 W D G++LWAN +Y + +G + + ++ + +K + Sbjct: 168 WQEDCNGNLLWANTAYVDTLRDLDV--PTILGSGKDHLTGQKRRIAVKLVQDKKEEWFDI 225 Query: 267 STLEHGN------NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320 ST+ H + N + +IVR N+ E L T+ L++ +A Sbjct: 226 STVAHADGWLHFANNATEIVRADNARSE------------FVKTLGKTF---GELSIGLA 270 Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380 IF +NR L N +F ++ + FL+ NP+ D +L+ +R +PE N+ +W+E + Sbjct: 271 IFGKNRQLTMFNPAFGDMTSLPFDFLSANPAIDTVLDRMRELRMMPEPKNYTSWREQFTA 330 Query: 381 VYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438 V +++ T+ W LP GQT V P G +FE+++ +V L ++ ++ Sbjct: 331 VEDAAKNGTYSKNWTLPEGQTYRVTGRPYPGGAFALLFEDISAEVSLTRRFRLDIETGQA 390 Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 +D LS+ +AVF G + +SN A+ +LW Sbjct: 391 VLDTLSDAIAVFSSTGTLVMSNRAYAALW 419 >gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512] Length = 538 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+V +RAE A + +A A++ K+ F+ VS+ELR+PL I+GF+D+L G Sbjct: 243 VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 300 Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N +Q +YV + S LL++VN +LD++ ++AG +L ++ + + +A + Sbjct: 301 ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 360 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + LG VAD++ + QI ++ NA+ F+ G V + AA +G Sbjct: 361 AKTKGVTLTSRIQRSLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKL 420 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I D + FV + RR G GLGLS+V+ + LHGG+ +I+S Sbjct: 421 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 480 Query: 780 GVTTINCRI 788 T I I Sbjct: 481 EGTIITIEI 489 >gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] Length = 772 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 39/287 (13%) Query: 529 SIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSP 583 SI PL +A+ +T +V V + V + + ++ E R+A E+ N F+ +S+ELR+P Sbjct: 322 SISPLCDARGNITHYVAVKEDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTP 381 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L IIGF+++L+ G L KQS+Y++ I + LL+L+NDILDL+ V+AG M L Sbjct: 382 LNAIIGFSEVLQDRFFGPLTDKQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIK 441 Query: 644 TIVLNDLLNE----VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 ++ ++D + +K+ IA H ++ + AD ++L QI ILSNA+ Sbjct: 442 SVKVSDAIETGLVMLKEKIAC--HGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAV 499 Query: 700 DFSSKGSTVILKAARDNGD------------------------FIFSVKNNGSSIPEDMC 735 F+ G T+ ++ + D I S+ + G I + Sbjct: 500 KFTPDGGTITIEMMVLDPDPIPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDL 559 Query: 736 KSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +F F R G GLGL + + LHGG +I + EG Sbjct: 560 PHIFEEFYQTLAGIRASTPGTGLGLPLSKRMAELHGG--TIMAHSEG 604 >gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 789 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 114/215 (53%), Gaps = 6/215 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ H+S+ELR+PL I+G+ +LK +L+ +Q + I S LL L+ Sbjct: 322 ANQAKSDFLAHMSHELRTPLNAILGYAQILKLDT--TLDQRQINGLTVIQRSGEHLLMLI 379 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD+A ++AG M+LN S + L L++ + +SI K E + L + V D Sbjct: 380 NDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVD 439 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL Q +LSNA+ F+ +GS + A F V++ G I E + +F F Sbjct: 440 EIRLRQALLNLLSNAIRFTEQGSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFE 499 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VS+ R + G GLGL+I + L GG + + S Sbjct: 500 QVSD-ERHRFGGTGLGLAISRQLVRLMGGEIHVES 533 >gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] Length = 732 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 135/243 (55%), Gaps = 13/243 (5%) Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +T+ N+A ++++K+ F+ ++S+E+R+P+ I+GF LL++S L +Q ++ Sbjct: 350 ITKLNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHL---TPEQEDFLH 406 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +I++SS +LL ++NDILDL+ ++A + L+ L +L +V I+I+ Sbjct: 407 HINSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEF 466 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILK---AARDNGDFIFSVKNNG 727 ++ + D R+ QIF+ ++SNA+ F+ KG T+ LK A +N F +V++ G Sbjct: 467 TANAAYWVY-CDEMRVKQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTG 525 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I +D+ +F F+ RR G GLGLSI + I L G++S++S + T Sbjct: 526 IGIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFL 585 Query: 786 CRI 788 R+ Sbjct: 586 VRL 588 >gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1279 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 12/236 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE AL EA +A + K+ F+ H+S+++R+PL ++IGFTD+L T + Q Y Sbjct: 780 QAEAALLVAKEAAEQATKAKSVFLAHMSHDIRTPLNSVIGFTDILDTLIKDPV---QKGY 836 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I LL ++NDILDL+ ++AG M L+ + + L +++Q ++ N+ Sbjct: 837 LRSIKIGGKALLGIINDILDLSKIEAGQMVLHRENVNPHQLFRDMEQLFHEQIRHKNLNF 896 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG----DFIFS 722 V D L S + D RL QI ++ NA+ F+ +G + K RD D Sbjct: 897 VVDVDEALPQSLLVDAVRLRQILLNLIGNAIKFTEQGYVTLRVQKIFRDAQCSKLDLQID 956 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V+++G I D +S+F F + + +RR G GLGL+I + + + G + ++S Sbjct: 957 VEDSGMGISPDDHESIFQMFQQSKGQDERRFGGSGLGLAICQKLVTMMDGEIHVAS 1012 >gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha proteobacterium HTCC2255] gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha proteobacterium HTCC2255] Length = 843 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 11/265 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +A M +++D AE+ L E + + D+ K+ F+ +S+E+R+PL IIG DLL Sbjct: 321 DAIYMAYIRDISDRKVAEKILIEARDRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLL 380 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ KQ YV+ ++S ++L +N+ LD+ ++ G +L+ L DL + Sbjct: 381 KAT---NLSKKQDHYVQIATSSGEVMLEHINEALDITRIEGGAFELSPQEFNLPDLARSL 437 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + +E + +++ I D F+ D R+ QI + +L N++ F+ +GS + + Sbjct: 438 VEVLKPLANEKELSLELQIDDNIKAYFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISC 497 Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLH 768 D F++ + G I + + +F FV S+ Q RG GLGLSI Sbjct: 498 SHEADVSRLKFTITDTGLGIAPENHEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQM 557 Query: 769 GGHVSISSS-DEGVTTINCRIPSKE 792 GG + + S+ +EG T I +P K+ Sbjct: 558 GGDIIVESNINEGATFI-LNLPLKQ 581 >gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1] gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1] Length = 949 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V +S SS++LL +++DILD + +++ +K+ ++++ + + Sbjct: 499 ELP---KGVDRLVTAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + D + V D RL Q+ S +LSNA+ F+ G +IL +D+ Sbjct: 556 YLPLVVRKQLGLYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMG-CIILHLRQDS 614 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 SV++ G IP +F+ F QR +G GLGL+I E IN+ G +++ Sbjct: 615 DYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAV 674 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 675 DSEPGMGSQFTIRIP 689 >gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] Length = 727 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329] Length = 1051 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 129/233 (55%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ ++ K+ E I + Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKVKEKGIELT 493 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725 V IS V D RL Q+ +SNA+ F+ +GS + L++ FSV++ Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAVIEFSVQD 553 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F R+ G GLGL+I + L GG + + S Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606 >gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] Length = 725 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 10/222 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A++ K+ F+ ++S+E+R+P+ IIG LLK + L+ +Q +++E + SS LL++ Sbjct: 192 QANQKKSEFLANMSHEIRTPMNGIIGMASLLKGT---PLDEEQREFIEMLETSSLSLLDI 248 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682 +NDILD + ++AG ++L+ + L +L +++ + E + + D L V Sbjct: 249 INDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGLEFECGLDQNLTPLLVG 308 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D RL Q+ ++ NA+ F+ G + + A DN F V++ G IP D K+V Sbjct: 309 DAPRLRQVMINLVGNAVKFTQSGKVSVSIRQVAEAGDNITVTFEVEDTGIGIPADKLKTV 368 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F +F R G GLGL+I + L GG + + S + Sbjct: 369 FEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESRE 410 >gi|319787875|ref|YP_004147350.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466387|gb|ADV28119.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 287 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 118/216 (54%), Gaps = 3/216 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ E L++ ++K+ F+ ++S+E R+PL +I+ T LL+ G LN +Q + V ++S Sbjct: 39 LDQQAEQLKEVSDLKSRFLSYMSHEFRTPLGSILSITRLLEEGMDGPLNDEQLRQVRFVS 98 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673 +++ L ++V+D+LDLA ++AG + ++ + L DL + ++ + + +++ + Sbjct: 99 SAAVELRDMVDDLLDLAKIEAGRISISPAWFDLMDLFSALRGMFRPLVDDAHHVELVFEE 158 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D ++L QI +SNA+ F+ KG I G FSV++ G IPE Sbjct: 159 PPPLPMLYTDDKKLAQILRNFISNALKFTPKGRVAISARPEGVGFVRFSVRDTGIGIPEH 218 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 M ++F F V + + RG GLGL++ F L Sbjct: 219 MLGALFEDFIQVDTPIQKRLRGTGLGLALCRRFAEL 254 >gi|48374236|gb|AAT41932.1| putative two component hybrid sensor kinase [Fremyella diplosiphon Fd33] Length = 582 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK ++L+KA+E+K F+ ++S+E R+PL +I+ + +L G L ++Q + V +I Sbjct: 203 LDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFIQ 262 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673 +++ L LVND+LDLA V+AG +++ S+ ++DL ++ + + + +++ + + Sbjct: 263 KAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEE 322 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G +D ++ QI +SNA+ F+ +G + R + IFSV + G I Sbjct: 323 PEGIGQMYSDEGKVAQILRNFVSNALKFTEQGEVRVSAMQRGHA-VIFSVSDTGIGIAIA 381 Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F FV ++ + Q +G GLGL + L GG +S+ S +T IP Sbjct: 382 DQERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVESKLGQGSTFTASIP 439 >gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 1047 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 88/385 (22%), Positives = 171/385 (44%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ Y+ + Sbjct: 679 LDTATDGVVLIDPEGRIRSMNHSASALFG----------------------YDREETEGK 716 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 717 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 776 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 777 FCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADE 836 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 837 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIA 896 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 897 LMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 956 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 957 NGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMV 1016 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1017 EANRAQFAIDSTPGHGTVVEIAFPP 1041 >gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 998 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 16/248 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E L E E+ A+ +K+ F+ ++S+E+R+P+ I+GF DLL L SL S+ +Y Sbjct: 581 RIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDL-SL-SQTKKY 638 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +SS ILL L++DILD++ ++AG + ++ + L ++ E+KQ K ++ + Sbjct: 639 LNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLL 698 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFI--- 720 + D L + D RL QI ++ NA+ F+ +G I R G +I Sbjct: 699 TIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLA 758 Query: 721 FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V + G I PED K +F+ F + + R+ G GLGL+I L GG +S+SS Sbjct: 759 IEVTDTGIGIAPEDQAK-IFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSR 817 Query: 778 -DEGVTTI 784 EG T I Sbjct: 818 LGEGSTFI 825 >gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] Length = 1586 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 124/258 (48%), Gaps = 16/258 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TD + E+ L + +A + K+ F+ + S+E+R+PL I+G T LL SL Sbjct: 817 NITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + V+ I S LL +VND+LDL+ ++A M L + L + L EV +T+ Sbjct: 874 ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAE 933 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713 N+ K+ L +V AD RL QI + +LSNA+ F+S G I K A Sbjct: 934 AKNLDFKLEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWKGA 993 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 N FS+ + G I E+ K +F F RR G GLGLSIV L G Sbjct: 994 EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGK 1052 Query: 772 VSISSSDEGVTTINCRIP 789 + + S + +T +P Sbjct: 1053 IGVESREGQGSTFWTEMP 1070 >gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 754 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%) Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 Y+ LP + T +N+ D E L E L + E+K SF+ ++S+E+R+P Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +I+GF ++L G + ++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +L++++ + + + +K + D L DR+RL+Q+ + L+NA F+ Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNACKFTE 664 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + D G+ V+++G IP + + +F+RF Q G GLGLSI + Sbjct: 665 TGYIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722 Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790 I GG + + S + CR+ S Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754 >gi|240145207|ref|ZP_04743808.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|257202724|gb|EEV01009.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] Length = 891 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%) Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F+ +T S +R EK +A L A ++ F+ ++S+E+R+P+ IIG ++ T + Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ + I ++S +LL+L+NDILDL+ ++AG M++ + +L +E+ + Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718 + HE N+ V KL S + D R+ Q+ + ILSNA+ ++ KGS T+ +++ + D Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355 Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772 I +V + G I +D K +F+ F + G +G+ GLGLSI +NL GG + Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414 Query: 773 SISSSDEGVTTINCRIPSK 791 ++ S + +T IP K Sbjct: 415 TVDSIYQKGSTFTITIPQK 433 >gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 921 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E+ L + D +K++F+ ++S+E+R+PL I+GF+DLL T + Sbjct: 675 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 731 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K+ Sbjct: 732 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 790 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 EN ++++ D L ++DR RL Q+ S ++NA+ F+S+GS + + G+ + Sbjct: 791 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 845 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +F RFV S H G GLGLSI +S + GG + + S Sbjct: 846 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 900 >gi|56751048|ref|YP_171749.1| two-component hybrid sensor and regulator [Synechococcus elongatus PCC 6301] gi|56686007|dbj|BAD79229.1| two-component hybrid sensor and regulator [Synechococcus elongatus PCC 6301] Length = 577 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 136/263 (51%), Gaps = 25/263 (9%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 RA + L E+ +AL +A ++K F+ + S+ELR+PLT +IG+ LL+ L Sbjct: 309 RANQTLLEQQQALIEAHRQSEALSQLKTDFLANTSHELRTPLTGMIGYLQLLQ-DDLAET 367 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +++ S+ LL ++NDILD+A ++AG ++L T+ L +LL EV+ + ++ Sbjct: 368 PEERQEFIAGAYHSALHLLGIINDILDIARIEAGRLQLQAETVPLRNLLAEVETCLRSQA 427 Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARD 715 + R ++ ++ + + DRQR LQ+ ++ NA+ F+ G +T + + Sbjct: 428 QAKGLVYRCRIAAETESVALWGDRQRSLQVLFNLVGNAIKFTLTGYVEVRATAVWQPLCA 487 Query: 716 NGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767 NG + ++++G + + S+F F S A R G GLGL I + Sbjct: 488 NGQNLPGYLRLEIEDSGIGVAPERQGSLFQSF-SQADSSLTRQFGGSGLGLVICRRLLES 546 Query: 768 HGGHVSISSSDEGV-TTINCRIP 789 GG V + S EG+ TT+ C IP Sbjct: 547 MGGIVELFSPGEGLGTTVTCLIP 569 >gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 640 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ ++++N FV VS+ELR+PLT I G L+ LG + Q +E ++S L + Sbjct: 407 KRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIAQSNSQRLRH 466 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++D+LD+ + AG M+ + + L LL + ++ + +++++++ +A Sbjct: 467 LIDDLLDMDKLVAGKMQFDLQPLQLRPLLQQALRNNQPYAERHQVQLQLLASADC-QVMA 525 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D QRL Q+ + +LSNA FS+ G TV L A G SV++ G I ED +F++F Sbjct: 526 DAQRLEQVLANLLSNAAKFSAAGQTVELAAGLAQGWVRISVRDYGQGIAEDFKPRIFSKF 585 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + I GG + S++ +T +P Sbjct: 586 AQADAGDTRRQGGTGLGLAISKEIIEHMGGRIGFDSTEGQGSTFWLSLP 634 >gi|322434681|ref|YP_004216893.1| histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321162408|gb|ADW68113.1| histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 577 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 14/225 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT+++E D IK+ F+ VS+ELR+PLT+I G LL +G +++K + Sbjct: 54 LTQRSEL----DTIKDEFISTVSHELRTPLTSIRGALGLLSAGMMGEVDAKAQNLLRIAV 109 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-----KMHENNIRI 669 ++ L+ L+NDILDL +++G L+ L DL V+QS+ T + + + + Sbjct: 110 TNTDRLIRLINDILDLERMESGRAPLHVRRCSLRDL---VQQSVETMTPMAQTAQVELTL 166 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++S + F D R+LQI + +LSNA+ FS S V ++ D + V + G Sbjct: 167 ALLSPPEGMYFDGDPDRILQILTNLLSNAIKFSPAQSIVTIQVEADLDSVLVRVADQGRG 226 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 IP + ++F+RF V + Q+ G GLGL+I + + H G + Sbjct: 227 IPLEKLDTIFDRFQQVEASDARQKGGTGLGLAICRTIVLQHNGSI 271 >gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 931 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E+ L + D +K++F+ ++S+E+R+PL I+GF+DLL T + Sbjct: 685 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 741 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y++ + ++ +LL L++DILDL+ ++AG + + +N L ++ +S+ K+ Sbjct: 742 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 800 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 EN ++++ D L ++DR RL Q+ S ++NA+ F+S+GS + + G+ + Sbjct: 801 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 855 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +F RFV S H G GLGLSI +S + GG + + S Sbjct: 856 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 910 >gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 788 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 128/255 (50%), Gaps = 6/255 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + M ++T+ RAE + R+ +E+K+ FV S+E R+PL I+ +LL+ Sbjct: 535 EVMAVIRDITERKRAEDDIRNALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLEH 594 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +++ +++ I S + L+ND+L L ++G + N + L + + + Sbjct: 595 YGHKWDETRKLKHLSQIQQSVDHMTGLLNDVLLLGKAESGNLAFNPVPMQLTEFCTGLAE 654 Query: 657 --SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 I T+ HE R++ +L D + L IF+ +LSNA+ +S +G + Sbjct: 655 ELQITTQTHEIVCRLQ----EQLTEVQMDEKLLRHIFTNLLSNAIKYSPQGGIINFDLVF 710 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ + I V+++G IP C VFN F + G G GLGL+IV+ ++LHGG +++ Sbjct: 711 ESDEAILKVQDHGLGIPPSECSHVFNSFNRATNVGNISGTGLGLAIVKRSVDLHGGEITL 770 Query: 775 SSSDEGVTTINCRIP 789 +S + T R+P Sbjct: 771 TSQETVGTIFTVRLP 785 >gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1198 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +K E L ++ + K+ F+ ++S+ELR+PL +I+ + L+ +K L+ + +Y E I Sbjct: 517 IQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK--DLDKEYIEYAEVIQ 574 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL L+++ILDL+ ++AG MKL ++++ ++++ +++ + ++ V + Sbjct: 575 SSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAKNKQLQFAVEVE 634 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 ++ D+ RL QI +LSNA+ F+++G + D+G F+ F+V + G I D Sbjct: 635 ERIPEVETDKMRLEQILKNLLSNAIKFTTQGKVSLTVKKDDSGKFVQFTVTDTGIGIATD 694 Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F F A RR G GLGLSI + GG + ++S + ++ +P Sbjct: 695 KQGLIFEAF-QQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKENVGSSFTFSLPV 753 Query: 791 K 791 + Sbjct: 754 R 754 >gi|83944134|ref|ZP_00956590.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36] gi|83845001|gb|EAP82882.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36] Length = 1064 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K DEIKN FV VS+ELR+PLT+I G L++ S ++ + + +E ++ L Sbjct: 695 KKIDEIKNEFVSTVSHELRTPLTSIKGALGLIEMSARDTMPASALRLIEIARNNADRLTT 754 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 +VNDILDL + +G + + S + LN++++ Q + +N ++ + + D + + Sbjct: 755 IVNDILDLEKISSGKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDI-NVT 813 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD R++Q+ + ++SNA +S++G+ V +KA I V+N G +PE+ +F Sbjct: 814 ADWSRMMQVLANLMSNACKYSTEGTDVTIKAETIGDMAIVYVQNFGPGVPENFKNRIFQA 873 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 F S A R G GLGL+I + GG++ S G T Sbjct: 874 F-SQADGSDTRAKGGTGLGLNITRQIVWRQGGNIGFESKPSGTT 916 >gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 482 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622 + ++IK+ F+ +S+ELR+PLT+I G+++ L + G + ++++ ++ IS + L+ Sbjct: 243 RTNQIKDDFISSISHELRTPLTSIKGWSETLNS---GGYDPEETKIGMKIISKETDRLIG 299 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV +ILD + ++ MKL T+ L +LL E+ ++ K I++++ S+ Sbjct: 300 LVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHG 359 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+F I+ NA+ FS + S + L R +G+ SV++ G I + V +RF Sbjct: 360 DGNRLKQVFLNIVDNAIKFSHESSIIFLSLQRIDGNIEISVQDTGIGISAENLARVRDRF 419 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 H Q G GLGL+I + FI H G + I S TTI +P+ Sbjct: 420 FQVDH--QNGGTGLGLAISQQFIERHHGQMLIRSELGAGTTITVSLPA 465 >gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 914 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 19/246 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L +NVT+ V+A R + EA A K F+ ++S+E+R+P+ +IG T+LL Sbjct: 241 LLNVINVTELVKARR----EAEAASMA---KGQFLANMSHEIRTPMNAVIGMTELL---- 289 Query: 599 LGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LG+ L+++Q +YVE + +++ LL L+NDILD + +++G ++ L ++ V + Sbjct: 290 LGTDLDTEQQEYVEIVKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEM 349 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 +A + D + D +RL Q+ + NA+ F+ KG+ I A Sbjct: 350 MAPNAQTKQLEFTCFVDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEKGNVDIHAAMIGE 409 Query: 717 GDFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 D + F++ + G IP+D ++VFN F V + Q G GLGLSI + + L GG Sbjct: 410 EDGMVLIRFAISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGG 469 Query: 771 HVSISS 776 + + S Sbjct: 470 RMGLDS 475 >gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] Length = 1386 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 4/230 (1%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E +A+ K+ F+ +S+ELR+PL+ ++ LL+ + ++K + E I S Sbjct: 982 QAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRRGTMD--DAKIKRASEAIERS 1039 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + + L++D+LD++ + G +++ + T+ L ++ +S++ + +I + D Sbjct: 1040 TKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDES 1099 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 LG D RL QI +L+NA+ FS++G V + R G V + G+ I + + Sbjct: 1100 LGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQ 1159 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +F+RF+ R G+GLGL+IV + LHGG V S +G I Sbjct: 1160 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1209 >gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1033 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 16/233 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN F+ ++S+E+R+PL ++G L++ S+L L Q Y++ S LL ++NDIL Sbjct: 663 KNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL---QRDYLDTALNSGRSLLQVLNDIL 719 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 DL+ V++G ++L L ++L++V + E + ++ D L FVAD+ RL Sbjct: 720 DLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFVADKGRL 779 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNR 741 QI ++ NA+ F+ GS + D+G +F V + G IP D +VF+ Sbjct: 780 RQILFNLVGNAVKFTESGSIEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDKVSTVFDP 839 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT----TINCRI 788 F V + + +G GLGL IV + L GG +++ + + T TI RI Sbjct: 840 FTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTIRTRI 892 >gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 623 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 133/249 (53%), Gaps = 9/249 (3%) Query: 550 RAERALTEKNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 R E L KN+A +A+ K+ F+ ++S+ELR+PL I+G++++L+ Sbjct: 104 RTEELLHAKNQAEHAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEAEELGQ 163 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+ ++ I ++ LL L+ND+LD++ ++AG M L+ T L ++ EV +I ++ Sbjct: 164 SECISDLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVE 223 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS 722 + ++V LG+ ++D +L Q+ +LSNA F+ +G+ I +K ++ F F Sbjct: 224 KKANILEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEETWFCFM 283 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V +NG + E+ K VF F RR G GLGL+I + F + GG++ ++S Sbjct: 284 VTDNGIGMTEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGK 343 Query: 781 VTTINCRIP 789 +T +P Sbjct: 344 GSTFKLLLP 352 >gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina pelagi HTCC2506] gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina pelagi HTCC2506] Length = 774 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 165/372 (44%), Gaps = 48/372 (12%) Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES--------------------D 495 I L+N +R+++ E PGT++ + SR ES D Sbjct: 403 IILANSRYRTVFGLSEEDTKPGTNLAQVMRK-SRKPIESAQVSGSSSKRDDSSSEIKMPD 461 Query: 496 G-WDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFV------NVTD 547 G W L + ER++ +G + + +D + L+ L ++ LT + +D Sbjct: 462 GRWLLLS--------ERRTAEGFIAIGADITQLKMHQTRLHESERRLTDIIHALSETRSD 513 Query: 548 SVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + R L E N + R A K +F+ ++S+ELR+PL I+GF+D+++ LG Sbjct: 514 AERKAAQLEELNHSFRIEKNKAEAASRAKTTFLANMSHELRTPLNAILGFSDIMRQQMLG 573 Query: 601 SLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + S K + Y I S LL L++DILD+ ++ G + L + + E + I Sbjct: 574 PIGSEKYTGYAHDIHESGEFLLQLIDDILDMQKIETGRTTMLRRIFDLTEAVAESARMIE 633 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + I + V KL + ADR+ + QI ++SNA+ FS G V + +G Sbjct: 634 ASVARRQIDLVVEQPEKLNIY-ADRRAVTQILMNLMSNAVKFSDAGGEVRVSVKERSGAV 692 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 + S+ + G I + + F R +G GLGL+I S LHGG I+S+ Sbjct: 693 LLSITDRGEGISQCNLAKIGRPFEQTESEWTRTKKGTGLGLAIARSLTELHGGRFRIAST 752 Query: 778 DEGVTTINCRIP 789 T + R+P Sbjct: 753 LGEGTIVAIRLP 764 >gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 713 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 14/241 (5%) Query: 553 RALTE--KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 RAL E + EA A+ K+ F+ +S+ELR+PL IIGF LL+ + L++ + + Sbjct: 468 RALAEQARREA-EAANRAKDEFLAVLSHELRTPLNPIIGFAQLLR--RKSGLSAADYRAL 524 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + L++D+LD++ + +G M++ + DLL V +I ++ Sbjct: 525 ETIERNGRLQAQLIDDVLDVSRIISGKMRVELRAV---DLLPVVAAAIEAVRSPAELKGI 581 Query: 671 VISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +S G+L + VAD R+ Q+ +L+NA+ F+ +G V++ R + + V ++G Sbjct: 582 CLS-GRLDDGATAVADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCRGDRTLLIRVSDSG 640 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I D VF RF R+ G+GLGL+IV + LHGG VS S G T Sbjct: 641 IGISPDFLPYVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTF 700 Query: 786 C 786 C Sbjct: 701 C 701 >gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] Length = 1090 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 140/256 (54%), Gaps = 12/256 (4%) Query: 537 QTMLTFVNVTDSVRAERA-LTEKNEALR-KADEI------KNSFVQHVSYELRSPLTNII 588 Q+ L N TD + ++A L + AL+ KAD++ K+ F+ ++S+ELR+PL +++ Sbjct: 510 QSNLELTNKTDVLEQQKADLEQAKLALQAKADQLSSTSRYKSEFLANMSHELRTPLNSLL 569 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 + L ++ G+L+ Q + + I LL+L+NDILDL+ V+AG ++L Y+ + ++ Sbjct: 570 LLSQSLMKNREGNLSESQLEDIGIIHRGGRSLLDLINDILDLSKVEAGKLRLEYTDVDVH 629 Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L+ E+ E ++ V ++ + DRQRL QI + ++ NA+ F+++GS Sbjct: 630 QLVEEITAQFKPLADEKDLAFNVDVAMPETFRLHTDRQRLRQILNNLIGNAIKFTAEGSV 689 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + A +G F+V++ G I + SVF F V Q G GLGL+I Sbjct: 690 TLTIAENTDGQLAFTVEDTGIGIEQAQHDSVFEAFAQVDGTTSRQHGGTGLGLTISRDLA 749 Query: 766 NLHGGHVSISS-SDEG 780 +L GG + ++S +DEG Sbjct: 750 SLLGGSIHLTSEADEG 765 >gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14] Length = 883 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 18/254 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T E L E E ++D +K++F+ ++S+E+R+PL I+GF+ L+ T + Sbjct: 642 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 698 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY++ + ++ +LL L++DILDL+ ++AG + +N L ++ ++ K Sbjct: 699 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 757 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 N ++++ D L ++DR RL Q+ S ++NA+ F+ +G+ + D Sbjct: 758 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 814 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V + G I +M +F RFV S H G GLGLSI S + GG + + S Sbjct: 815 FYVADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 869 Query: 778 DEGVTTINCRIPSK 791 E + +P K Sbjct: 870 PEKGSCFWFTLPIK 883 >gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1120 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 ++E+AL + E A+ K+ F+ +S+++R+P+ ++G +LL S SL+ +QS Y Sbjct: 716 QSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGES---SLDPEQSHY 772 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + + LL+L+NDILDL+ ++AG +KL L + + V + K E +++ Sbjct: 773 LKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQL 832 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + D QRL QI +L NA+ F+ +GS + + +G + F V + G Sbjct: 833 QTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSLTLQQQPDGQYSFQVADTGP 892 Query: 729 SIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I K +F FV S HR G GLGLSI + G + + S Sbjct: 893 GIAPHRQKIIFEPFVQEESGTHR-HFGGSGLGLSICHKLVTAMRGTLWLKS 942 >gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon GZfos17A3] Length = 424 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 153/309 (49%), Gaps = 38/309 (12%) Query: 516 GTLELLSDSVLEYSIIPLPN----AQTMLTFVNVT----DSVRAE---RALTE----KNE 560 G+ E+ S+ E +I +P +L+ + +T RAE R L E KN Sbjct: 111 GSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEDEKRRLMEELETKNA 170 Query: 561 ALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 L+KA E +K F+ S+ELR+PLT + +L+ +G L+ KQ + + Sbjct: 171 ELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKKQEKSI 230 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----N 665 E + + T L NL+ DILD++ ++AG +KL+++++ LND + E A KM E Sbjct: 231 EVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAVKE-----AIKMQEAFAKGK 285 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 NI I+ ++ + + D +RL Q +L+NA+ FS K VI++ R + FS+ + Sbjct: 286 NIEIRA-KLAEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVRFSITD 344 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + K +F F + ++ + G GLGL+I + I H G + S +T Sbjct: 345 YGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404 Query: 784 INCRIPSKE 792 IP+K+ Sbjct: 405 FYFVIPTKQ 413 >gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 946 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 21/254 (8%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ M ++ ++ + E L + + K+ F+ ++S+E+R+P+ ++G T+LL Sbjct: 246 AERMRVYIAELEATKQE--LIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLL 303 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T+ +LN++Q ++ E + S LL +VNDILD++ ++AG ++L++ DL+N V+ Sbjct: 304 TT---ALNAEQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDF---DLVNTVE 357 Query: 656 QSI---ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +I A + E I + I G + D RL Q+ ++ NA+ F+ KG + Sbjct: 358 SAISLMAARAAEKQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRV 417 Query: 712 AARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 + D F V + G IPED+C +F +F RR G GLGL+I + Sbjct: 418 SVYRVEDPQTKASHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICK 477 Query: 763 SFINLHGGHVSISS 776 + L G++ ++S Sbjct: 478 QIVELMDGNIGVNS 491 >gi|163848304|ref|YP_001636348.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526218|ref|YP_002570689.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669593|gb|ABY35959.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450097|gb|ACM54363.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 920 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 124/230 (53%), Gaps = 4/230 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D K F+ +S+ELR+PLT + G+ +L+ +L+++Q +E + S+ + +LVN Sbjct: 686 DRAKTDFIATISHELRTPLTIVRGYLELILRQSASALDAEQRDMLEEVRQSAIQMTHLVN 745 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 + + +A +DAG +++ + L ++ E + + E +I++ ++ L +ADR+ Sbjct: 746 NAIMVANLDAGQIEVQIQPVALAPVIEEALRPYRAVLSERDIQVLLVLPDDLPPVLADRE 805 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744 L Q S++ NA + +G +++ A D+ ++ + G IP ++ +F RF Sbjct: 806 LLKQALSQLFDNARRYVHQGQ-ILVSAGVDSDTLWLAISDTGPGIPTEIMGRLFTRFQRV 864 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792 + + +RG GLGL+I + L GG ++++S+ +G T TI R P + Sbjct: 865 DGNNSAQRGGGLGLAITRQLLELQGGSITVTSTPGQGSTFTIRLRYPKER 914 >gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 625 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 24/258 (9%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ +A+ LT +EA + K++F+ ++++E+R+P+ I+G +L ++ L Sbjct: 95 DVTEFKKAKTELTAAHEAALAGERAKSNFLANITHEIRTPMIGILGMAELTLATE---LT 151 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--- 660 SKQ +Y+E S+ LL ++NDI+D A ++ G ++L + DL V+++++ Sbjct: 152 SKQREYLEMARHSAQSLLTVLNDIVDYARIEVGALELAKTPF---DLFATVEEAVSVFRP 208 Query: 661 -KMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + +N ++ + + D + V D RL QI ++ NA+ F+ GS V+ K Sbjct: 209 LAVKKNLSLEYRFLGDVP-QNLVGDASRLRQILINLVGNAVKFTDSGSVVLAICPEPEKQ 267 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLH 768 + FSV++ G IP D ++F+ F VS A R Q G GLGL+IV + + Sbjct: 268 SPGKVGLCFSVRDTGIGIPRDKIPAIFDSFTQADVSPARRYQ--GAGLGLAIVRHLVEMQ 325 Query: 769 GGHVSISSSDEGVTTINC 786 GG + S + + +C Sbjct: 326 GGEYGVESEEGQGSIFSC 343 >gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c] Length = 662 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + ER K EA ++ K+ F+ H+S+ELR+PLT+I+G+T+LL SK+G S QS+ Sbjct: 130 IEKERVDRLKAEAENRS---KDRFLAHLSHELRTPLTSILGYTELLMDSKIG--QSAQSE 184 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + + +S LL+L+N++LDL+ + A ++LN S + L+ L+ +V + + + Sbjct: 185 -LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEVNLDALIADVYALMNIPATDKGLT 243 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFI-FSVK 724 + VISD L D R Q+ ++SNA+ F+ +GS + D +F+ FSV Sbjct: 244 LSVISDTPLPLKITTDATRFRQVLINLISNAIKFTEQGSVTLRLWCEDKPGCEFLHFSVT 303 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + G IP + SVF F A RR G GLGL+I + GG VS+ S+ Sbjct: 304 DTGIGIPANQLNSVFKPFEQVADVVSRRQGGSGLGLAICNELVAKMGGEVSLHST 358 >gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 744 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%) Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 Y+ LP + T +N+ D E L E L + E+K SF+ ++S+E+R+P Sbjct: 478 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 536 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +I+GF ++L G + ++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ Sbjct: 537 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 595 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +L++++ + + + +K + D L DR+RL+Q+ + L+NA F+ Sbjct: 596 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNACKFTE 654 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + D G+ V+++G IP + + +F+RF Q G GLGLSI + Sbjct: 655 TGYIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 712 Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790 I GG + + S + CR+ S Sbjct: 713 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 744 >gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD 2210633] gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] Length = 932 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + A D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 131/270 (48%), Gaps = 19/270 (7%) Query: 534 PNAQTMLTFVN-VTDSVRAERALTEKNEALRKA----------DEIKNSFVQHVSYELRS 582 P+ + + F+ +TD RAE+ E+ L + + +K+ F+ VS+ELRS Sbjct: 879 PSPEGITIFITEITDRKRAEQ---EREHLLAREQAARAEAERANRVKDEFLAIVSHELRS 935 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+G++ LL+T KL +K +Q + I+ ++ + L+ D+LDL+ + G + LN Sbjct: 936 PLNPILGWSTLLQTQKLNP--AKTAQALNAIARNARLQAELIEDLLDLSRILRGKLSLNV 993 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L + +++ +I+I + + +G + D RL Q+ +LSNA+ F+ Sbjct: 994 FPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNLLSNAIKFT 1053 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 +G V ++ R V + G I D +F F R+ G+GLGL+I Sbjct: 1054 PEGGLVDIQLERCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKFGGLGLGLAI 1113 Query: 761 VESFINLHGGHVSISSSDEGV-TTINCRIP 789 V + LHGG V S EG T ++P Sbjct: 1114 VHHLVELHGGTVEAESLGEGQGATFTVKLP 1143 Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 6/235 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E L + D K F +VS+E R+PLT ++G ++ + + +++Q +E I ++ Sbjct: 344 RAEQLAELDRAKTVFFSNVSHEFRTPLTLMLG---PVEEALQATQDAQQRDRLELIHRNA 400 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L LVN +LD + ++AG ++ Y L L ++ + + + ++V Sbjct: 401 LRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLP 460 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 DR+ +I +LSNA ++ +G ++ +R N V++ G IP + Sbjct: 461 EPTYVDREMWEKIVLNLLSNAFKYTFEGEIAVILRSR-NEQIELEVRDTGIGIPAEELPQ 519 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GLS+V+ + LH G +S SS + T+ IP+ Sbjct: 520 IFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIPT 574 >gi|291541287|emb|CBL14398.1| EDD domain protein, DegV family [Roseburia intestinalis XB6B4] Length = 891 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%) Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F+ +T S +R EK +A L A ++ F+ ++S+E+R+P+ IIG ++ T + Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ + I ++S +LL+L+NDILDL+ ++AG M++ + +L +E+ + Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718 + HE N+ V KL S + D R+ Q+ + ILSNA+ ++ KGS T+ +++ + D Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355 Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772 I +V + G I +D K +F+ F + G +G+ GLGLSI +NL GG + Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414 Query: 773 SISSSDEGVTTINCRIPSK 791 ++ S + +T IP K Sbjct: 415 TVDSIYQKGSTFTITIPQK 433 >gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 611 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 171/363 (47%), Gaps = 52/363 (14%) Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFA----AIITSFDDERKSLQGTLELLSDSVL--E 527 + P T+ +IAA Y +D +L+ II + E S+ SD ++ E Sbjct: 17 IDPETNPEDIAAVYHNYIAGTD--ELYPNEKLPIIKALQGEVTSVDDLEIHQSDRIILIE 74 Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRK------------------ 564 P+ N ++ F ++T+ RAE+ L + + L + Sbjct: 75 SRGTPIYNEAGEVEYALVAFQDITEHKRAEKILADYYQELEQEVKRQTEELEIAKEKAEV 134 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+E K++F+ ++S+ELR+PL I+GF+ ++K S +L+ ++ + + I S LL L+ Sbjct: 135 ANEAKSAFIANMSHELRTPLNAILGFSQIMKRS--STLSQEEKENINIIGRSGDYLLTLI 192 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 N+ILDLA ++AG M LN L L EV+ + K + +++++ D + ++ D Sbjct: 193 NNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKLEINHDQDVPQYINTD 252 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----------------KAARDNGDFI-FSVKNN 726 +L Q+ +++NA+ F+S+G + + N D+I +V++ Sbjct: 253 ETKLRQVLINLINNAIKFTSEGGVFVQVRNQPSDIKDSNLNNDSKSLTNNDYINITVQDT 312 Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G I +F F + + + G GLGL+I F+ L GG +++++ E TT + Sbjct: 313 GVGIAAGELDKLFEAFAQTESGKKSSEGTGLGLAISRKFVQLMGGDITVTTEVESGTTFS 372 Query: 786 CRI 788 I Sbjct: 373 FNI 375 >gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 884 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 130/233 (55%), Gaps = 15/233 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TEK E +A E K+ F+ ++S+E+R+P+ I G DL ++L +Q +++ + Sbjct: 371 TEKAE---QATEFKSIFLANMSHEIRTPINGISGLIDLCLATEL---THRQRDFLDKAAY 424 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 S+ +L++LVNDILD + ++AG + + Y L +++ + +IA + +E N+ + I+ Sbjct: 425 STNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRSYEKNLHLNCEIAP 484 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG---DFIFSVKNNGS 728 F+ D R+ QI + +NA+ F+S GS TV+ +A +N I SV + G Sbjct: 485 NLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDKQIKLILSVSDTGV 544 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 + E ++FN F+ R+ G GLGLSIV+ + L GG +S++S+ + Sbjct: 545 GLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEISVNSTPD 597 >gi|84514941|ref|ZP_01002304.1| hypothetical protein SKA53_11993 [Loktanella vestfoldensis SKA53] gi|84511100|gb|EAQ07554.1| hypothetical protein SKA53_11993 [Loktanella vestfoldensis SKA53] Length = 517 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/402 (22%), Positives = 179/402 (44%), Gaps = 39/402 (9%) Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVF 233 A + + +++ + + L+W D G + W+N ++ K + + +V Sbjct: 134 APVPFATSQQAGELALLRDVLRHTPQLIWRTDGDGKVTWSNQAHADFWAKHDMTHDEMVA 193 Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293 Q++ E+ ++ ++ E N V +++ G + L+ + IA+ Sbjct: 194 QRSAFEAGA--TNGTRRIAFPTAGKETNQWFDVLSVQQGGS-------TLHFATDTSIAV 244 Query: 294 DVSKEITVNDQ-LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352 ++ Q L T+ L++ +AIFD+ R L N + +++ + FL+T P+ Sbjct: 245 RADQDRQSFVQTLGKTFA---ELSIGLAIFDKQRRLVTFNPALLDMTRLGFEFLSTRPTI 301 Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRG 410 D +L+ LR LPE ++ +W++ +V +++ T+++ W+LP+GQ V +P G Sbjct: 302 DTVLDRLRETRILPEPKDYASWRDQFTAVEAAAKNGTYREMWNLPDGQAFRVTGRPHPNG 361 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 ++FE++T + L ++ + ++ +D LS+G+AVF G + + N A+ SLW Sbjct: 362 AFAFLFEDVTADLSLTRRFRSDIETGQAVLDALSDGIAVFTVAGTLVMYNRAYASLWGMV 421 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDS---- 524 + PG R + +R W + A T + D + G E SD Sbjct: 422 AD---PGLEHRAATSEIAR-------WHAYCAPTTDWTDLHHFIHQAGPRETWSDDALLA 471 Query: 525 ---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563 +L P+ TM+ F + R LT+ + A+R Sbjct: 472 DGRMLRCQATPIAGGMTMVRFSLAPRHLPVLRKLTQTDPAIR 513 >gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] Length = 1035 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 56/371 (15%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISS 776 + +I S Sbjct: 1005 EANRAQFAIDS 1015 >gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] Length = 928 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E+ L E E +AD +K++F+ ++S+E+R+PL I+GF+ LL ++ Sbjct: 687 DITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETEDP--- 743 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y + + ++ +LL L++DILDL+ ++AG + +N L ++ +S+ ++ Sbjct: 744 EEKLEYAKMVEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVK 803 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +++I + L V+D RL Q+ S ++NA+ F++ GS I D+ Sbjct: 804 PG---VELIFESTLPQCVIVSDPNRLHQVVSNFINNAIKFTTTGSIRIGYDKPDDKHLRV 860 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I + C+ +F+RF+ Q G GLGLSI +S I GG + ++S Sbjct: 861 YVTDTGIGIAPEACRKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVNS 913 >gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 890 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +E L K+ + K++F+ ++S+ELR+PL +I+ + LL ++ +LN + Y + I S T Sbjct: 481 SEQLEKSSQYKSNFLANMSHELRTPLNSILILSQLLAENENHTLNEDEEGYAKVIHTSGT 540 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677 LL L++DILDL+ ++AG + L + L ++ +K + + + + +++ Sbjct: 541 DLLKLIDDILDLSKIEAGKVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLP 600 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + D QRL QI +LSNA F+ +GS + D+G SV + G IP+D K Sbjct: 601 AVWYTDGQRLQQILKNLLSNAFKFTEQGSVRLGFDYTDDGMLAISVTDTGIGIPKDKQKL 660 Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 +F F + R G GLGLSI F+ L GG + + S+ Sbjct: 661 IFEAFQQVDGKTNRIYGGTGLGLSICNEFVKLLGGSIQLDST 702 >gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999] Length = 1029 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 13/234 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF N+T E+ E N++ K+ F+ ++S+E+R+P+ IIG +LL+ + Sbjct: 509 TFQNITSIKETEQRANEANQS-------KSDFLANMSHEIRTPINGIIGMNELLQKT--- 558 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL ++Q++Y + I SS LL L+NDILD + ++AG + LN + +++ + + + I Sbjct: 559 SLTTQQTEYTQAIQRSSQALLGLINDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQP 618 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 N+++ I L + ++D RL QI + SNA+ F+ GS I + D Sbjct: 619 LSDAKNLQLD-IQVCPLVTIMSDPMRLRQILINLCSNAIKFTEYGSIRISFSVIDEQYLR 677 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F++ + G IP + +F +F + + + G GLGL+I + L GG + Sbjct: 678 FTISDTGIGIPSEKSSQLFEKFNQLDTSSKRSIGGTGLGLTISQQLSQLLGGAI 731 >gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501] gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501] Length = 1044 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 13/259 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ A+ AL + EA A++ K+ F+ +S+E+R+P+ I+GF DLLK SK+ Sbjct: 687 TITDITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLK-SKIT 745 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + K Y++ I +LL+L++DILD++ ++AG + + Y I L +++ E+++ Sbjct: 746 --DEKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLE 803 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAAR 714 K E ++I V + ++ + D RL QI ++ NA+ F+ +G I L + Sbjct: 804 KAKEKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEGLITISVKRDLLQWK 863 Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ ++K+ G I + K VF+ F + + R+ G GLGLSI E + GG Sbjct: 864 DDQYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGG 923 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S +T P Sbjct: 924 TIQLESELGKGSTFTLLFP 942 >gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 792 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 104/414 (25%), Positives = 179/414 (43%), Gaps = 60/414 (14%) Query: 419 LTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 L V +D+ ++Q + I+ +S+ +F GR+ L N AF+ + Sbjct: 381 LGVAMDITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAF----- 435 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-----LELLSDSVLE 527 A R + D + AA+ D R S +G +EL VL+ Sbjct: 436 ---------GFADEAVRKGAQKDELNRIAALAIKAD--RPSPEGRAGAREVELYDGRVLQ 484 Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK----------------------- 564 + + T++T +VT R E ++LRK Sbjct: 485 LAERFTGDGGTVITAADVTAIRRQEVERQRSADSLRKTVDELEASQEKLSLLARKYEIAM 544 Query: 565 -----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618 A++ K+ F+ ++S+ELR+PL I GF++++ G L + K Y I S Sbjct: 545 TRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGYAHDILKSGQ 604 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+NDILD+A ++AG M L+Y + L +L + + + K + + + + G + Sbjct: 605 HLLSLINDILDMAKIEAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTLS-LEAGDVP 663 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKS 737 AD + L Q+ ++SNA+ F+ +G + + R N +V + G I Sbjct: 664 EIEADYRGLKQVMLNLISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGIGIAAADLAR 723 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F V H +G GLGL++ +S I LHGG +++ S TT++ IP Sbjct: 724 LAQPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSFDIP 777 >gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 2384 Score = 110 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 19/258 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL EK E L + K+ F+ ++S+ELR+PL N++ +L + +L+SKQ +Y Sbjct: 1654 QAKAALEEKAEQLSLTSKYKSEFLANMSHELRTPLNNLLILAQMLAENAESTLSSKQVKY 1713 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I +S T LL L+NDILDL+ +++G M + ++ ++L + ++ + + Sbjct: 1714 AETIHSSGTDLLALINDILDLSKIESGKMDVEVGSVHFSELRDLSSRTFRHVAEGKGLDL 1773 Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------- 719 + L S + D +RL Q+ +LSNA+ F+ +G+ V L+ R + Sbjct: 1774 SIELADNLPSETIITDAKRLQQVLKNLLSNALKFTEQGA-VRLRVERATSGWSASHPVLN 1832 Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 FSV + G IP+D + +F F R+ G GLGLSI L GG Sbjct: 1833 RVKSVIAFSVTDTGIGIPQDKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELTRLLGGE 1892 Query: 772 VSISSSDEGVTTINCRIP 789 + + S+ +T +P Sbjct: 1893 IRLQSAPGAGSTFTLYLP 1910 >gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii DSM 18315] Length = 475 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 133/226 (58%), Gaps = 15/226 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ E + D +K++F+ ++S+E+R+PL I+GF+ LL + ++ Q+VE I + Sbjct: 249 KQREKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDT---DDPEEKKQFVEIIQKN 305 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + +LL L++D+LDLA +++GI++L + L +L E+ S+ K+ + + V D Sbjct: 306 NELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPA-EVALCVAPD-- 362 Query: 677 LGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L S++ D+ RL QI S ++NA+ +SKG+ V+ R + + FSV + G + ++ Sbjct: 363 LPSYIMRCDKVRLTQIISNFINNAIKHTSKGTIVLGYEVRQD-EIEFSVTDTGDGMSPEV 421 Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778 + VF+RF ++G ++G GLGLSI +S I GG + + S + Sbjct: 422 QQHVFDRF----YKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEE 463 >gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 932 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + A D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|329906606|ref|ZP_08274455.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327547217|gb|EGF32072.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 656 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 6/212 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+ELR+PL + + LL ++ G+LN +Q ++ E I ++ LL+L+NDILD++ V+A Sbjct: 1 MSHELRTPLNSSLILARLLADNRSGNLNDEQIRFAETIYSAGNDLLDLINDILDISKVEA 60 Query: 636 GIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 G ++L I L L+ ++ + T+ + ++ +D SF ADRQR+ QI Sbjct: 61 GKLELAPDVIPLEQLMASLRMTFEPMTRQKQLGFSAQLAADAP-ASFFADRQRVEQILKN 119 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 +LSNA+ F+ G + + +G F+V ++G I D + +F F RR Sbjct: 120 LLSNAIKFTGTGQVGLTVCQQADGRVAFAVSDSGIGIAADQQEVIFEAFRQADGTTSRRY 179 Query: 753 -GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 G GLGLSI L GG ++++S + EG T Sbjct: 180 GGTGLGLSISRDLAALLGGEITLASVAGEGST 211 >gi|300770375|ref|ZP_07080254.1| sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762851|gb|EFK59668.1| sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 586 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 9/245 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +++ L E A + K+ F+ +S+E+R+PL IIG DLLKT+KL + Q + Sbjct: 199 SQKELIASKEVAEAATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTKL---DQNQQLLI 255 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + ASS IL +LV D+LD++ ++ ++NY+T LN L +K + + +++ Sbjct: 256 ENLQASSHILSDLVTDLLDISRIETNKFEINYTTFNLNQSLTSLKHVVDPMLKSKGLKLN 315 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVKNN 726 + ++ + D R QI +LSNA+ F+ KG+ TV + + ++ VK+ Sbjct: 316 IRTAENTPPELITDEARFKQILLNLLSNAIKFTLKGNITVYISYILFHDKYVLECKVKDT 375 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I ++ +F++F + +G+GLGL+I + +++ GGH+ + S TT Sbjct: 376 GIGIKKENIARLFDQFSQIEEPQIPVNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTF 435 Query: 785 NCRIP 789 +P Sbjct: 436 TFCLP 440 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+S R L + +A +K+ FV ++S+E+R+PL IIG T+LL+ + L+ Sbjct: 819 DITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDT---PLS 875 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V+ I SS LL+++NDILD + ++AG M L L L+ + +A Sbjct: 876 ERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAAR 935 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718 I + D + + + D RL Q+ +LSNA+ F+ +G ++ +AA + Sbjct: 936 GKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVE 995 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +F V++ G I +F F RR G GLGL+I ++ + L GG + Sbjct: 996 LLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTI 1051 >gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 985 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E A KA+E K+ F+ ++S+E+R+P+ +IG +DLL + SL+ +Q +YVE I +S Sbjct: 316 EMARAASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDT---SLDPEQRKYVETIISS 372 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL+++NDILD + ++A + L+ L +LL +V + + + + + +++ Sbjct: 373 GKNLLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLELTLVTGSF 432 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731 L F+ D+ R+ QI ++ NA+ F+ G V+ A++ D + V++ G IP Sbjct: 433 LPRFLRGDQARIRQILVNLVGNAVKFTHSGEVVVCAMAQEERDSQVTIRLLVRDTGIGIP 492 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +M K+VF F+ +R+ G GLGL+I G + + S++ Sbjct: 493 REMMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTIILESTN 541 >gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 897 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L+S Q Y+ I S+ LL Sbjct: 254 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 309 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L + L+EV + +A HE + + + D ++ Sbjct: 310 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGL 369 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD-NGDFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ +G+ +V LKA++D N + F+V++ G I E Sbjct: 370 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDENIELQFTVRDTGIGISERQQA 429 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S++S Sbjct: 430 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 471 >gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 982 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 144/266 (54%), Gaps = 19/266 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL++ A A+ K++F+ ++S+++R+P+ IIGFT L Sbjct: 442 ILVLSDRTADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRTPMNAIIGFTTL----A 497 Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L +++ K Y+ ASS LL+L+ND+LD++ +++G + L + L+D+L+++K Sbjct: 498 LSNIDDKNRVKDYLAKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKT 557 Query: 657 SIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711 ++ +++ + + + + D D+ RL Q+ +LSNA+ F+ G TV ++ Sbjct: 558 IVSGQIYAKQLELYMDAMDVTDEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRVRQL 617 Query: 712 --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765 A R G + F VK+NG + ++ K +F F S R Q G GLG++I ++ + Sbjct: 618 AGAVRGCGQYEFRVKDNGIGMSQEFAKKIFEPFERERTSTVSRIQ--GTGLGMAITKNIV 675 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791 ++ GG + + ++ + R+P + Sbjct: 676 DMMGGTIEVQTAQGKGSEFIIRVPMR 701 >gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 522 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 40/327 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG ++++ + EYSI P A Sbjct: 194 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 253 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + ER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 254 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 313 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 314 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 372 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 373 FKEICEETYAVHALKIPK-NVRFVFDQGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 431 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765 + L N + SV + G I E+ C+++F+RFV NA ++G GLGL+I ++ I Sbjct: 432 -IKLAYKVSNDEIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 487 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 GG + + S+ +T +P KE Sbjct: 488 EKLGGRIGVESTLGVGSTFWFTLPLKE 514 >gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] Length = 423 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 169/355 (47%), Gaps = 41/355 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++++ + + + DG I +N R++ + PG R + YY Sbjct: 83 LNNIVDPIIISKKDGTITFANMEARNITR-------PGVEGRKLYEVFEDYY-------- 127 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALT 556 + ++++ G + L + +Y I+P+ Q ++ + V ER L Sbjct: 128 VNQMFEEAQNKKEITSGEINLFVNGEKKYYELKIVPVTLEQNNERYIIILHDVTQERIL- 186 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYIS 614 E RK F+ +VS+ELR+PLT+I G+ + L +L+ K+ +++ I Sbjct: 187 ---ENARK------EFISNVSHELRTPLTSIHGYAEALLED---NLDDKELIRRFLTIIE 234 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + + + L+ND+LDL +++G + + I ++L V+ I + N+ ++ +S Sbjct: 235 SEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILEHVRNIIEPLTKDYNVDVEFVSP 294 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSS---KGS-TVILKAARDNGDFIFSVKNNGSSI 730 K+ + D+ RL Q+ ++ NA+ ++S KG V+++A +DN VK+ G I Sbjct: 295 DKI-ELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKVLVEAYKDNNHVKLIVKDTGVGI 353 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 PE K +F RF V A + G GLGLSIV++ + H G + +S EGV T Sbjct: 354 PEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGTIEFTSK-EGVGT 407 >gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114] gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system with GacA [Vibrio fischeri ES114] Length = 931 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKTS L+ Q Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSENQQDYLQTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 ++NDILD + ++AG + L D L+EV +A HE + I + D ++ S Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ KG+ +V LK D+ D F V++ G I E Sbjct: 400 IGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + I+ GG + +SS Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSS 501 >gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10] gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] Length = 1035 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 705 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + +A K F+ +S+E+R+PL IIGF++L+ Sbjct: 765 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 825 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 885 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYEL 944 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 945 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029 >gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus DSM 14838] gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +LT +VT+ +R L + + A+ +K++F+ ++S+E+R+PL I+GF+ L+ T+ Sbjct: 140 VLTVYDVTELQNVQRLLNIERKNSISAERLKSTFIANISHEVRTPLNAIVGFSGLIATA- 198 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 S ++ Y++ IS ++ LL L+NDI DL+ ++AG + YS NDLL E++ Sbjct: 199 --SDEEEKKLYMDIISENNERLLRLINDIFDLSQIEAGTLNFEYSEFDANDLLRELEGMF 256 Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 K+ NN + +I + + S + ++RQR++Q+ + ++ NA+ F+ G Sbjct: 257 KVKLF-NNPSVDLICEDSVQSIIMYSERQRIIQVMANLIHNAIKFTKSGKIRFSCRMEGT 315 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F V + G IP++ + +F+ F + G GLGL++ + I GG + S Sbjct: 316 DEVYFYVSDTGIGIPKEEQQEIFSSF--KKLDREVPGTGLGLTLSQIIIQNLGGRAGLES 373 >gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] Length = 932 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + A D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 812 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609 A++ EK A +A++ K+ F+ ++S+ELR+PL IIGF++++ G L S + Q Y Sbjct: 518 AQKYAEEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEY 576 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LL+++ND+LD++ ++AG MKL+ + L + ++E + ++ + + Sbjct: 577 CQDILTSGNYLLDVINDVLDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTL 636 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGS 728 DG + VADR+ + QI +LSNA+ F+ G ++++ +R GD + ++ + G Sbjct: 637 DSRIDGAI-PIVADRRAMKQILVNLLSNAVKFTPDGGRIVVR-SRIIGDRVMVTIADTGI 694 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP++ + F V + G GLGL+I +S + LH G + + S T + Sbjct: 695 GIPKEALARLGCPFEQVESQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRI 754 Query: 787 RIP 789 +P Sbjct: 755 NLP 757 >gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 589 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 179/356 (50%), Gaps = 36/356 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N + G ++ + + Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 LF +++ ++ + ++ TL+ S +L + PL A++ +V +V R +TE+ Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + + + I S Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LVND+LDLA +++G L+Y + +N+ L ++ + + E NI + Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISLTEE 473 Query: 679 SFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 F+ D ++ Q+F+ ++ NA+ SS+GS I + +G +K++GS IPE+ Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSGSGIPEEDLPF 532 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF A R G GLGL+IV++ + H G +++ S + TT IP+K Sbjct: 533 IFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIPTK 588 >gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1186 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ IK+ F+ +S+ELRSPL I+G++ +L++ +L +K Q +E I ++ + L+ Sbjct: 812 ANRIKDEFLAVLSHELRSPLNPILGWSRILRSKQLSP--TKVEQALETIERNAKLQAQLI 869 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G M LN +++ L + +++ NI I+ + V D+ Sbjct: 870 EDLLDVSRILQGKMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQ 929 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +LSNA+ F+ G + ++ + N VK++G I + VF F Sbjct: 930 NRLQQVVWNLLSNAVKFTPSGGQIEVQLEQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQ 989 Query: 745 --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 A Q G+GLGL+IV F LHGG V +SS + + T R+P Sbjct: 990 EDGATTRQFGGLGLGLAIVRHFTELHGGTVQVSSLGQDLGATFTVRLP 1037 >gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] Length = 550 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 43/337 (12%) Query: 467 WKTEENRLSPGTHIRNIAA---------TCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517 W T R G +R++AA C R + D + F+A I+ + +G+ Sbjct: 228 WST---RPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISG-----TNFEGS 279 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 ++ L+ ++ + ++ +VT+ + ER ++ F+ VS Sbjct: 280 IKWLNKGTVD--------GRLLIMLHDVTERLEQER--------------LQADFISMVS 317 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +ELRSPLT+I G LL + G L K +E ++ L+ ++NDILD+ + +G Sbjct: 318 HELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIINDILDMEKISSGR 377 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 + T L++L+ E ++ AT ++IK D R++Q+ + ++SN Sbjct: 378 LDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSN 437 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGV 754 A FS G TV + + + SV++ G I PED K +F RF ++N+ R + G Sbjct: 438 AAKFSKPGGTVEISVEKTPENVCVSVRDEGMGIAPEDQHK-IFQRFADMANSDRATKGGT 496 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GLGLSI ++ + GG + S + TT +P K Sbjct: 497 GLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533 >gi|229121553|ref|ZP_04250780.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201] gi|228662017|gb|EEL17630.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201] Length = 417 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 185 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 243 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 244 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 302 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 303 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 359 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 360 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 416 >gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 376 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 119/208 (57%), Gaps = 9/208 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 + +S+ELR+PL I+GF LL+ + SLNS+Q ++V+ I + LLNLVN++LD+A Sbjct: 16 LISRMSHELRTPLNGILGFAQLLEMDE--SLNSQQQEFVQAILNGARHLLNLVNEMLDIA 73 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQ 689 ++ G ++L Y I L +++E + I + N IK+++ +L + D RL Q Sbjct: 74 RIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRN--IKIVNQTQLDKYYVYTDSTRLRQ 131 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 I +L NA+ ++ TV L + + G+ +K++G IP++ +++F F +G Sbjct: 132 ILLNLLDNAVKYNRDNGTVTLTSRSEGGNICIHIKDSGIGIPKNEYENIFAPFYR--IKG 189 Query: 750 QR-RGVGLGLSIVESFINLHGGHVSISS 776 + G G+GLS+V+ I L GG + + S Sbjct: 190 TKVDGTGMGLSLVKQLIQLMGGTIGVES 217 >gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 524 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 42/328 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG ++++ + EYSI P A Sbjct: 196 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRLLFEGQYVWVRAYAYPYKYDEAGRPA 255 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + AER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 256 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 315 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433 Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764 + K ++D + SV + G I E+ C+++F+RFV NA ++G GLGL+I ++ Sbjct: 434 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 488 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + + S+ +T +P KE Sbjct: 489 IEKLGGRIGVESTLGVGSTFWFTLPLKE 516 >gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1800 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1312 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1371 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 1372 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1431 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715 V +S + D QRLLQ+ +LSNA+ F+ GS ++++ ARD Sbjct: 1432 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1491 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1492 GSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1551 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1552 LLGGEIHAQSEPGRGSTFTLYLP 1574 >gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] Length = 729 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 134/258 (51%), Gaps = 28/258 (10%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P Q +LT +VTD AE+ L + A E K+ F+ VS+E+R+PL ++G DL Sbjct: 196 PIIQWILT--DVTDRRHAEQKLRADRDHAANASEAKSRFLAMVSHEIRTPLNGVLGMADL 253 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + S ++Q Y+ I S + LL L++++LD + ++AG ++L + L L+ Sbjct: 254 LDDT---STTAEQQNYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELETGAVELTPLVER 310 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSK 704 V + ++ K H ++I GS++A D RL Q+ ++ NA+ F+ + Sbjct: 311 VVELLSPKAHAKGLQI--------GSYIAPEVPETIQSDPARLQQVLYNLVGNAIKFTEQ 362 Query: 705 GS-TVILKAARDN-GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G +++L+ ++D+ G+ + F+VK+ G + E +F F + R+ G GLGL Sbjct: 363 GGVSLVLQVSQDSAGNHLLEFAVKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGAGLGL 422 Query: 759 SIVESFINLHGGHVSISS 776 +I + L G +++ S Sbjct: 423 AISKRLAELMGSSLTVQS 440 >gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus 10329] Length = 932 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + A D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 1298 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 133/246 (54%), Gaps = 10/246 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +++ N+T+ VR L + +A + K+ F+ ++S+E+R+PL +IGF+DLL + Sbjct: 641 IVSVQNITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT- 699 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 LN Q+QY+ YI+ S LL ++NDILD + +++G M+L + D++ +V I Sbjct: 700 --PLNEMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVI 757 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 + + ++ + + I G D R+ QI +L NA+ F+ +G + ++ R + Sbjct: 758 LFQSQKKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLRGEIELKVQKLRMD 817 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + I F+V++ G IP+D K +F+ F ++ G GLGL+I + + G Sbjct: 818 AERIALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTS 877 Query: 772 VSISSS 777 +S+ S+ Sbjct: 878 LSLKST 883 >gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1037 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 L + + +R ++E+ K+ F+ ++S+ELR+PL + + LL +K G+L +Q + Sbjct: 345 LVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVK 404 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I +S+ LL L+NDILDL+ ++AG ++L +V++ +L ++++ + + Sbjct: 405 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVLQRLRETFEPMARQKGLA 464 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ +D + VAD QRL QI +L+NA+ F+ G + A NG F V + G Sbjct: 465 LEIEADALAPTQLVADNQRLQQILKNLLANALKFTEHGKVSLHVRAGGNGRVRFDVCDTG 524 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + +F F +RR G GLGLSI GG + + S Sbjct: 525 IGIAREQLPVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDS 575 >gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 1104 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 14/243 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + E+ L E +A E K+ F+ +S+E+R+P+ ++G +++K ++L + +Q Sbjct: 572 IETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQL---DLQQKH 628 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++E +S+ LLN++NDILD + ++AG + + L LL EV +S A K+ +NN Sbjct: 629 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKVEQNN-- 686 Query: 669 IKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---S 722 K+I D + ++D RL QI + ++ NA+ F+ G VI + D F S Sbjct: 687 TKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVVITARIDETTDGSFLQCS 746 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDE 779 + + G I S+F+ F R+ G GLGL+IV+ L G VS++S E Sbjct: 747 IIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNSMQGE 806 Query: 780 GVT 782 G T Sbjct: 807 GST 809 >gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 445 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N+ L+ + K+ + HVS+ELR+ L I+G + +LK G LN KQ +YV I S Sbjct: 201 ENKQLKSSKNNKSDYFSHVSHELRTTLAGILGLSKMLKQELYGPLNEKQKEYVNGIRVSG 260 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDL+ ++A +L + + D+ I K E NI I + ++ Sbjct: 261 EHLLALVNDFLDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQNIDIILKVSEQV 320 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D++++ QI ++SNA+ F+ +GS V L+ + + F V + G I E+ K Sbjct: 321 DFCTVDQRKIKQILINLMSNAIKFTEEGS-VTLQVEKVDNWLKFCVIDTGIGIKEEDQKK 379 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F F + + Q +G GLGL++ LH G ++++S + +P K Sbjct: 380 LFQPFQQIHSKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGSCFTLELPLK 435 >gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1349 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 130/241 (53%), Gaps = 11/241 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A++ A+ K+ FV V++EL++P+T++ G+T+LL +G +N Q+ ++ I A+ Sbjct: 1105 QAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPVNEAQANFLNTIRANIER 1164 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV+D+ DL+ ++ G ++L + + L +++ V +S ++ E +++ L Sbjct: 1165 MNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQTLEIAIPADLPP 1224 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFS-----VKNNGSSI 730 ADR RL Q+ ++SNA ++ +G +++ A R N + + VK++G I Sbjct: 1225 AWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEVIHVWVKDDGIGI 1284 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 E+ K +F +F + R G GLGL+I +S + + GG++ S TT + + Sbjct: 1285 SEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFESEFRKGTTFHFTV 1344 Query: 789 P 789 P Sbjct: 1345 P 1345 >gi|313159136|gb|EFR58511.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 663 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 133/241 (55%), Gaps = 16/241 (6%) Query: 550 RAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R +R L E+ E ++D +K++F+ ++S+E+R+PL I+GF+ L++ +L Sbjct: 394 RLKRTLEEREGQLVIAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQGEELS-- 451 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++++Y + +S +LL L+NDILD+++++ G ++ NYS +++ + + T Sbjct: 452 QEERAEYCAIVVNNSEMLLTLLNDILDISSLECGKIRFNYSA---EEIVQICQHILMTTA 508 Query: 663 HENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 H ++ + + S++ D RL QI +L+NA F+S+GS V+ ++ + + Sbjct: 509 HTCQPGVEGRLECAVDSYMLTTDVHRLSQILINLLTNAAKFTSEGSIVLGVEICPEQNEV 568 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +FSV + G IP D + +FNRF +++G GLGL+I + GG + + + Sbjct: 569 LFSVTDTGPGIPLDKQEMIFNRF-EKLDGNKKKGTGLGLAICRQIAMIFGGRIWVDPTYT 627 Query: 780 G 780 G Sbjct: 628 G 628 >gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 925 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT+LL+ S+L + +Q Y+ I S+ Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLTTIQKSA 329 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L L DL+ + +A HE + + V D Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 + D QRL QI + ++ NA+ F ++G TV ++A + D SV++ G + Sbjct: 390 PI-QLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGL 447 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 E+ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 448 SEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496 >gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 770 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+AL E A K+ F+ ++S+E+R+P+ +IG ++L+ +KL Q Y + Sbjct: 231 EQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETKL---TPDQEMYTD 287 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL ++NDIL+ + ++AG ++L +T L ++ +V +A K E +++ + Sbjct: 288 TIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVMLLAPKAAEKWVQLTL 347 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNG 727 D L F D R+ QI + ++ NA+ F+S+GS I G D SV + G Sbjct: 348 RYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVTGTSRGKEMDLRISVVDTG 407 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG---VT 782 IP + +F+ F V A G GLGL+I + L G + ++SS EG V Sbjct: 408 IGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKGRIHVTSS-EGKGSVF 466 Query: 783 TINCRIPSKE 792 TI+ +P+ + Sbjct: 467 TIDITLPTSD 476 >gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii DSM 18315] gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii DSM 18315] Length = 514 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E AD++K+ ++ +S+E+R+PL I GF++L+ Sbjct: 270 INIQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADS 326 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ Y E I ++ +L+ L+NDILDL+ ++A +K++Y + +N+L++ SI +M Sbjct: 327 DEERKGYYEIIKTNNLLLMQLINDILDLSKIEADAIKISYEPVDINELMDTTFASIKLRM 386 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E +++ + F D RLLQ+ + + +NA+ + +GS + + F Sbjct: 387 PE-GVQLFLEKGSCTCRFGTDSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKHLKFY 445 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 VK+ G I +D +S+F RFV + G+GLGL+I + + GG + + S + Sbjct: 446 VKDTGIGIAKDKLESLFTRFVKVNDYVE--GIGLGLAICQGLVTKMGGSMHVESELGIGS 503 Query: 783 TINCRIPSKE 792 T + +PS E Sbjct: 504 TFSFVLPSHE 513 >gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 887 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 129/257 (50%), Gaps = 3/257 (1%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N + +F+++++ + E L + A A+ + F+ +S+ELR+PLT IIGF++L+ Sbjct: 303 NGYFVESFIDLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELM 362 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 G + +++ +IS S LL+L+N ++DL+ ++AG M L L D+ + Sbjct: 363 LGEATGEFDELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADT 422 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 K + + NI + + + ADR R QI ++SNA+ F+ G +V + R Sbjct: 423 KSISSPLALKKNISMDFNVESDFLIY-ADRTRFKQIMYNLVSNAIKFTPAGGSVEVVGRR 481 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +V + G I +D K +F F ++ A + GLGL + ++F+ +HGG + Sbjct: 482 SENRIRVTVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRI 541 Query: 773 SISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 542 WVESEPGKGSTFTFEVP 558 >gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56'] gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56'] Length = 669 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 3/242 (1%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T+ T ++T V E L + A K+ F+ +S+ELR+PL I+GF LL Sbjct: 263 TVCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRD 322 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L +Q + +E++ LL L++DILDL+ ++AG + ++ + + ++L EVK + Sbjct: 323 RKTPLTDRQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTT 382 Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715 + I I + +L ADR R QI SNA+ + +G I + + Sbjct: 383 LDPMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPE 442 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSI 774 +G V +NG IP++ +F F G G G+GL+I + L GG V Sbjct: 443 DGVVKICVIDNGIGIPQEQHAKIFQPFQRAGQETGPIEGTGIGLAITKRLAELMGGGVGF 502 Query: 775 SS 776 +S Sbjct: 503 AS 504 >gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 764 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 131/254 (51%), Gaps = 14/254 (5%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 E+ + E+ + LR A+ K+ F+ ++S+ELR+PLT IIG + L S N Sbjct: 365 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESSNL 424 Query: 604 --SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ +Y++ I S LL+++N+IL+ + + +G L L + V Q ++ + Sbjct: 425 PIDKQKKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLMKVAKNVIQRVSDE 484 Query: 662 MHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 N+ + + + + SF AD +R+ QI +L+NA+ F+S+ TV L+ R+N Sbjct: 485 AEHRRINLELDLQINAQQDSFYADPERVQQILYHLLNNALKFTSENGTVTLRIWRENNQV 544 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V++ G I E+ +F F + N+ R G GLGL++ + + LHGG + + S Sbjct: 545 SLEVEDTGIGIKEEQIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESI 604 Query: 778 DEGVTTINCRIPSK 791 +T R+P++ Sbjct: 605 INQGSTFIVRLPNQ 618 >gi|312194418|ref|YP_004014479.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311225754|gb|ADP78609.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1425 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 16/257 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L EK E L + + K F+ ++S+ELR+PL +++ LL ++ +L +Q ++ Sbjct: 915 QARTGLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLILAKLLADNQDDNLTYQQIEF 974 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S + LL L+NDILDL+ V+AG M + + + + + + Q++ + Sbjct: 975 ARTIHSSGSELLMLINDILDLSKVEAGKMDVEATAVGTAAMCDALAQAVRPVAEVKGLTF 1034 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720 +V ++D FV D QR+ Q+ +LSNA+ F+ G+ + + A +G FI Sbjct: 1035 EVQVADDVPAEFVTDEQRIQQVLRNLLSNAVKFTDSGTVRLDVTVASSDGPFIVPSLRSA 1094 Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G I D + +F F RR G GLGLSI + L GG ++ Sbjct: 1095 PTVLSFAVSDTGIGIATDKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIA 1154 Query: 774 ISSSDEGVTTINCRIPS 790 +SS +T +PS Sbjct: 1155 VSSVLGQGSTFTLYVPS 1171 >gi|149280628|ref|ZP_01886742.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149228612|gb|EDM34017.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 731 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 131/245 (53%), Gaps = 12/245 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+EK R+A +K +F+ ++S+E+R+PL +I+GFT+LL+ + + + Y+ I Sbjct: 227 LSEKRA--REALSVKENFLANMSHEIRTPLNSILGFTNLLQRR---NADGVMAHYIVSIQ 281 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL ++NDILD++ ++AG+M++ + LL+ V+ + ++ + + D Sbjct: 282 QAGENLLAIINDILDISKIEAGMMRIVNKPFSIRGLLHSVEVLFSERVKSKRLGYHTLVD 341 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729 G + + + D RL QI +L N + FS KG+ + + D+ +F V +NG Sbjct: 342 GDVPDTLIGDATRLTQIMVNLLGNGLKFSEKGALRVGVKCKEVWPDHVVLVFEVSDNGIG 401 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I ++ +F RF R G GLGLSIV++ +++ G +S+SS TT Sbjct: 402 IEQEKLNQIFGRFNQADDSITRNYGGTGLGLSIVQNLLSIQHGDISVSSEAGKGTTFTFY 461 Query: 788 IPSKE 792 IP ++ Sbjct: 462 IPYQK 466 >gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] Length = 735 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K +F+ ++S+E+R+PL+ I+GFT+LL+ L+ +++V I S L+ ++ Sbjct: 235 AAQTKENFLANMSHEIRTPLSGILGFTNLLQKR---PLDETSAEFVSSIQRSGENLMAII 291 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683 NDILDL+ ++AG+M++ +N L+N V+ + E + I I + V D Sbjct: 292 NDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLTISSTIEPSIPDTLVGD 351 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 RL QI ++ NA+ F+ +G+ + ++ + F + + G I ++ +F Sbjct: 352 ATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKISDTGIGIDKEKLTEIF 411 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF R G GLGLSIV+S I L G++ +SS TT + IP Sbjct: 412 ERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTFHFYIP 463 >gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1857 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 19/257 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ +Q ++ Sbjct: 1140 QARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSERQVEF 1199 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + + I +LL + + + Sbjct: 1200 ARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLATTARPFRHEAENRRLSF 1259 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------- 719 V +LG+ V D +RL Q+ +LSNA F+ +G V L+ A G + Sbjct: 1260 DVEMAPELGTLVTDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGGWSADHPVLKNA 1318 Query: 720 ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 F V + G IP + K +F F A G R G GLGL+I NL GG + Sbjct: 1319 PAVVAFEVSDTGIGIPPEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGEI 1377 Query: 773 SISSSDEGVTTINCRIP 789 + S+ +T +P Sbjct: 1378 QLRSASGVGSTFTLYLP 1394 >gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 842 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 16/233 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT +A KAD+ K F+ ++S+E+R+P+ IIG +D+L S L+++Q Q V+ I Sbjct: 448 LTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQEQCVDTIR 504 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS LL ++NDILDL+ ++AG M+++ L ++ + K+ E + Sbjct: 505 DSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQTFA 564 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730 +L V D RL QI +LSNA+ F+ GS V L +RD D V + G I Sbjct: 565 RELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGI 623 Query: 731 PEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 ED + VF RF + H G G GLGL+I GG +S++S++ Sbjct: 624 SEDQARHVFERFSQADAATTRHYG---GTGLGLTISNILAQRMGGGISLNSNE 673 >gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 771 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 100/410 (24%), Positives = 182/410 (44%), Gaps = 55/410 (13%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478 TV+ DL + + I+ + E ++ + R+ L N F+ L + ++ ++PGT Sbjct: 367 TVEADLRLR---------DAIETIPEAFVLWDAENRLVLCNSHFQRLHQLPDSAVTPGTS 417 Query: 479 -----------HIRNIAATC----------------------SRYYNESDGWDLFAAIIT 505 R + C S + G+ IT Sbjct: 418 YDTVIEVGSMPEARTRSPECGGAQLGARTFEAQLDNGQWLHISERRTKDGGYVAVGTDIT 477 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 D L + +D L ++ L +Q L V + A + EK A A Sbjct: 478 RIKDHEHKL-----IDNDLRLRATVADLKISQVKLERQAVQLADLARKYAEEKYRA-EDA 531 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLV 624 ++ K+ F+ ++S+ELR+PL IIGF++++ + G L S++ Q Y I S LL ++ Sbjct: 532 NQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGRLGSEKYQEYCHDILTSGHYLLEVI 591 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 NDILD++ ++AG MKL+ + L+E + ++ + N ++++ +D + G S +AD Sbjct: 592 NDILDMSKIEAGRMKLDLEPLDFAGTLSESLRVVSGR--AENKQLELHADIEQGISVIAD 649 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 R+ + QI +LSNA+ F+ +G + ++ + + + G I + + F Sbjct: 650 RRAVKQILVNLLSNAVKFTPEGGQITVRGRARADSIVLMIADTGIGIAPQSLRKLGQPFE 709 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S NLHGG + + S T + +P + Sbjct: 710 QVESQLTKSYHGSGLGLAIAKSLTNLHGGSMRLRSQLGQGTVVRLVLPRQ 759 >gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 505 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 11/251 (4%) Query: 536 AQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGF 590 A ++L+F + +S+ AE A +EA +A+E K+ F+ +S+ELR+PL I+GF Sbjct: 222 AISLLSFRSENESLIAELETAKAVSDEARHRAEEANLAKSRFLASMSHELRTPLNAILGF 281 Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 ++++ LG + N +Y + + S LL L+N+ILDL+ ++AG +LN + L D Sbjct: 282 SEVMAKEVLGPVQNVTYREYAKDVHQSGQHLLELINEILDLSRIEAGRYQLNEEPLALAD 341 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 +++E + + K+ +I++ + L + +AD + + QI +LSNA+ F+ G + Sbjct: 342 IVHECCRMMDLKLKAKDIKLVQQFEPSLLNLMADERAVRQISLNLLSNAVKFTPSGGEIR 401 Query: 710 LKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 ++ G +I S+ +NG I E+ V + F S A + +G GLGL IV+ Sbjct: 402 VRVGWTSGGGQYI-SICDNGPGISEEEMPLVLSAFGQGSVAIKSAEQGTGLGLPIVQGLT 460 Query: 766 NLHGGHVSISS 776 +LHGG + + S Sbjct: 461 HLHGGLLRLKS 471 >gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 522 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 101/393 (25%), Positives = 163/393 (41%), Gaps = 41/393 (10%) Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIR 481 +L T+ L V G ++ GV DGR++L+NPA R L E L + R Sbjct: 120 ELRTEQARLATVVGA----MTSGVLFIDGDGRLRLANPAARRLLDIPEQALGRDYISVTR 175 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---PNAQT 538 N +R E L + D G + + +++PL T Sbjct: 176 NYG--LARVIEEG----LVGGQVVEHDVTIPPDPGA----APRHVRVTVVPLGTDAGGAT 225 Query: 539 MLTFVNV---TDSVRAERALTEKN-------------EALRKADEIKNSFVQHVSYELRS 582 + V+V S A R +T +R+ ++I+ FV +VS+ELR+ Sbjct: 226 VPDGVDVPCEAGSNSAGRGVTAAEGKRGGVVVVLHDITEIRRLEQIRRDFVANVSHELRT 285 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ + GF + L + + + + I + + LV D+LDLA +++ L Sbjct: 286 PVAAVQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLARLESPEPGLQR 345 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L D + + ++ +R++V S + ADR RL Q+++ +L NA ++ Sbjct: 346 ERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWADRHRLDQVWTNLLENARQYT 405 Query: 703 SKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 G TV + R+ + V++ G IP D+ +F RF V G GL Sbjct: 406 PVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRIFERFYRVDPGRSRAAGGTGL 465 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GL+IV+ I HGG V S T I RIP Sbjct: 466 GLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIP 498 >gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 571 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 26/261 (9%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N L +A K+ F+ ++S+ELR+PL I+GFTDL+ G + ++ + +E I Sbjct: 302 LEETNRDLSRASRHKSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPNELRESMEDIR 361 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+ND+LDL+ ++AG M+LN L L++ V + + E + + + Sbjct: 362 INGRHLLRLINDVLDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRLELVARVE 421 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------------- 712 L + D +R+ Q+ ++ NA+ F+ G +V + A Sbjct: 422 ADLPPALGDSKRMTQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQPETRNPKP 481 Query: 713 -ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 + DFI SV + G IP + KS+F F V ++ + G GLGLSI + + +H Sbjct: 482 ETPTSPDFIEISVADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIAKRLVEMH 541 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G + S +T RIP Sbjct: 542 RGSIWADSQVGRGSTFYVRIP 562 >gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 524 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 156/327 (47%), Gaps = 40/327 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG +++ + EYSI P A Sbjct: 196 FCEIVHPEDRERVLVQGFKRIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 255 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + ER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 256 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 315 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765 + L N + SV + G I +D C+++F+RFV NA ++G GLGL+I ++ I Sbjct: 434 -IKLAYKVSNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 489 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 GG + + S+ +T +P KE Sbjct: 490 EKLGGRIGVESTLGVGSTFWFTLPLKE 516 >gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 762 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 15/223 (6%) Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RKA E +K+ F+ VS+ELR+PLT+I LL T LG L ++ + + ++ L+ Sbjct: 512 RKAIERMKDEFIAVVSHELRTPLTSIHTSLKLLATGLLGQLLAEGQEMLTVADENTDRLV 571 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVN++LDL +++G + L+ +LL+E +S+ T ++NIRI+ ++ S Sbjct: 572 RLVNNVLDLQRIESGEVTLDAQECEAAELLDEAVESVLTIAQQHNIRIEAHAESL--SIW 629 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL----------KAARDNGDFIFSVKNNGSSIP 731 AD +++ + +L NA+ FS G V L K + D +F V++NG IP Sbjct: 630 ADPDYIVRALTNLLGNAIKFSPAGEVVCLTVKAVSSSLEKPSTDQEMALFCVQDNGQGIP 689 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + S+F RF V ++ ++ G GLGL+I + HGG + Sbjct: 690 HNKLDSIFERFQQVDSSDSRKKGGTGLGLTICRKIVEQHGGKI 732 >gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 621 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%) Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326 T E+GN K Y I + GI I + + N +++ H I NL V I ++D++ Sbjct: 104 TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 156 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385 + V+L + D+ + D L + LPE++ K EN ++ Sbjct: 157 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 209 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439 + + ++ PN T + +T+ + T++ + L + VD K+Q E+ Sbjct: 210 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 267 Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492 D+ G A F R A RS ++ EE GT + I S ++ Sbjct: 268 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 320 Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543 E D +I S D + G +VL + P N ML Sbjct: 321 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 380 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L E +AD +K++F+ ++S+E+R+PL I+GF+ LL+ + Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y I ++ +LL L++DILDL+ ++AG + + L NE+ QS+ + Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E + I + + +F +D+ RL Q+ ++NA+ F+S+GS VI R NG+ + FS Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +++F RFV G GLGL I +S + GG + + S Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606 >gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 557 Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 13/262 (4%) Query: 541 TFVNVTDSVRAERA---------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 TF+ + S++A A L EKN AL +A+ +K+ F+ +V++ELR+PL +II + Sbjct: 277 TFLLSSASIQASMAIQNTLLFSELKEKNAALEQANHLKSQFLANVTHELRTPLHSIISYG 336 Query: 592 DLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL + G L+S+Q ++++++ + L +LV+D+LDL+ ++A +++ + L+ Sbjct: 337 ALLLEGYVEGELSSEQEEHIQFMVRRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVS 396 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709 L+EV + ++ + + D ++ +AD RL QI ++SNA+ F+ KG T+ Sbjct: 397 LSEVVNQLKPMALNKDLYLNLECDPQVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIH 456 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + + + SV + G I +F F RR G GLGL+I I L Sbjct: 457 CQHMPERAQVLISVHDTGIGISPAALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIEL 516 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG +++ S +T +P Sbjct: 517 QGGEIAVESIPGRGSTFAFTLP 538 >gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 601 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 139/255 (54%), Gaps = 10/255 (3%) Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +VL + P N ML ++T E+ L + E +AD +K++F+ ++S+E+R+ Sbjct: 340 NVLVRNYRPQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADRLKSAFLANMSHEIRT 399 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+GF+ +L+ ++ ++ QY+ I ++ +LL L++DILDL+ ++AG + Sbjct: 400 PLNAIVGFSSMLEEAE---DQEEKHQYITIIEDNNKLLLQLISDILDLSKIEAGTFDIIP 456 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L N++ Q++ K + +++ + +F +D+ RL Q+ ++NA+ F+ Sbjct: 457 ERVNAKQLCNDLFQAMQMKTSP-QVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFT 515 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIV 761 S+G+ + + D + FSV++ G I + +++F RFV N+ G GLGL I Sbjct: 516 SEGN-ITIDYQIDGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSFIP---GTGLGLPIC 571 Query: 762 ESFINLHGGHVSISS 776 +S + GG + + S Sbjct: 572 QSIVTQLGGKIGVES 586 >gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Kim 5] Length = 590 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 167/357 (46%), Gaps = 17/357 (4%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +S+G+A+ DG I++SN A + + + ++ G + C+ D D A Sbjct: 68 MSQGLAIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCA---ARGDFHDAAAE 123 Query: 503 IITSFDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 I+ + R+ + + + + + F +VT+ E L E Sbjct: 124 ILQEWRANIAARQPISTVFHVAGERWVNMDATVSTGQHWVALFTDVTELKSREEELRELL 183 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 AD K+ F+ ++S+E+R+P+ ++G +LL + +L+++Q +++ I S Sbjct: 184 SRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVKSGNA 240 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678 LL ++NDILD + +DAG M L + + + + +V +++ E NI + + L Sbjct: 241 LLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGRAAPDLPA 300 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVK--NNGSSIPEDM 734 + + D R QI + ++ NA+ F+ +G + G+ + +++ + G IP + Sbjct: 301 AVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIMANIRIEDTGIGIPHEK 360 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +SVF++F RR G GLGL+I ++L GG++ + S + ++P Sbjct: 361 LESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGKGSVFTVKLP 417 >gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 934 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 8/244 (3%) Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ER L + EA +A+ IK+ F+ +S+ELRSPL I+G+ LL+T K Q Sbjct: 543 ERLLQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAP--EKAQQ 600 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I ++ + L+ D+LD++ + G M LN + L ++ +++ I+ Sbjct: 601 ALQTIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQ 660 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ +G D RL QI +LSNA+ FS G V ++ R + V++ G Sbjct: 661 LERHLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERVGAEAQMQVRDTGK 720 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 I VF F R R+ G+GLGL+IV LHGG V S EG T Sbjct: 721 GINPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFK 780 Query: 786 CRIP 789 R+P Sbjct: 781 VRLP 784 >gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 513 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+V +RAE A + +A A++ K+ F+ VS+ELR+PL I+GF+D+L G Sbjct: 218 VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 275 Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N +Q +YV + S LL++VN +LD++ ++AG +L ++ + + +A + Sbjct: 276 ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 335 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + LG VAD++ + QI ++ NA+ F+ G V + AA +G Sbjct: 336 AKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKL 395 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I D + FV + RR G GLGLS+V+ + LHGG+ +I+S Sbjct: 396 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 455 Query: 780 GVTTINCRI 788 T I I Sbjct: 456 EGTIITIEI 464 >gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 621 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%) Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326 T E+GN K Y I + GI I + + N +++ H I NL V I ++D++ Sbjct: 104 TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 156 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385 + V+L + D+ + D L + LPE++ K EN ++ Sbjct: 157 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 209 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439 + + ++ PN T + +T+ + T++ + L + VD K+Q E+ Sbjct: 210 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 267 Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492 D+ G A F R A RS ++ EE GT + I S ++ Sbjct: 268 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 320 Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543 E D +I S D + G +VL + P N ML Sbjct: 321 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 380 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L E +AD +K++F+ ++S+E+R+PL I+GF+ LL+ + Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y I ++ +LL L++DILDL+ ++AG + + L NE+ QS+ + Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E + I + + +F +D+ RL Q+ ++NA+ F+S+GS VI R NG+ + FS Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +++F RFV G GLGL I +S + GG + + S Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606 >gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 16/258 (6%) Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +VL + P N ML ++T ER L E +AD +K++F+ ++S+E+R+ Sbjct: 360 NVLVRNYQPQDNIIEMLCINFDITQLKETERMLIGAKEKAEEADRLKSAFLANMSHEIRT 419 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+GF+ LL+ + ++ QYV I ++ +LL L++DILDL+ ++AG + Sbjct: 420 PLNAIVGFSSLLEEA---EDAEEKHQYVTIIEENNKLLLQLISDILDLSKIEAGTFDVIP 476 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMD 700 + L NE+ Q++ K ++K++ +L F +++ RL Q+ ++NA+ Sbjct: 477 EQVNAQQLCNELFQAMQMKA---TPQVKILLAPELPELIFTSNKNRLYQVLLNFVTNALK 533 Query: 701 FSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGL 758 F+S+GS +I R NG+ + FSVK+ G I + +++F RFV N+ G GLGL Sbjct: 534 FTSEGSIII--DYRINGNEVRFSVKDTGIGIAPEKQEAIFTRFVKLNSFIP---GTGLGL 588 Query: 759 SIVESFINLHGGHVSISS 776 I +S I GG + + S Sbjct: 589 PICQSIITQLGGKIGVES 606 >gi|156974198|ref|YP_001445105.1| signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156525792|gb|ABU70878.1| hypothetical protein VIBHAR_01913 [Vibrio harveyi ATCC BAA-1116] Length = 526 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 SV+ E L ++ EA KA + FV V++ELR+PL ++G DLL + L+ +Q Sbjct: 147 SVQREVKLRKRAEASEKATK---EFVAMVNHELRTPLNGVLGSADLLDKT---LLDDEQQ 200 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY+ + S +L ++ND+LD + ++AG+M++ DL N + A K E I Sbjct: 201 QYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 260 Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + D KLG + D +R+ QI ++ NA+ F++ G V+L+ NG F V+ Sbjct: 261 HFSI--DKKLGIPEFLIGDFERVTQILVNLIGNAIKFTNLGG-VVLRVEWQNGYANFEVE 317 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP + K++F+ FV A R +R G GLGL+I ++ ++L GG +S +S Sbjct: 318 DTGIGIPLEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMGGDISFASVPRQG 376 Query: 782 TTINCRIPSKE 792 T +IP K+ Sbjct: 377 TMFKLKIPLKK 387 >gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 1156 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L + + L+++ + K+ F+ ++S+ELR+PL + + LL + G+L+ Q ++ Sbjct: 468 QAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLSENAEGNLSDDQVKF 527 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ LLNL+NDILD+A V+AG +++ + L L ++ + + Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTSLERLAEGLQGMFQPLAQDKGLDF 587 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V + L V DRQRL Q+ +LSNA+ F+ G + + + +F+V++ G Sbjct: 588 EVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFTEHGKVSLGISHQAGLGIVFAVRDTGI 647 Query: 729 SIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I D +++F F SN G G GLGLSI +L GG +S+ SS Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRKYG---GTGLGLSISRDLAHLLGGQISVDSS 698 >gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri] Length = 744 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 31/347 (8%) Query: 449 VFGPDGRIKLSN---PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 ++ PDG+ ++S P FR+L + ++N+ + + + L A+ Sbjct: 415 LYLPDGKTRMSKNEIPLFRALQEQT---------VKNVEMVIAPKHGKVK--TLLASGQA 463 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 D+E K QG + ++ D + E I Q + V+ + A + EA R Sbjct: 464 IVDNEGKK-QGAVVVMHD-ITERKIAEAERIQL------IRQQVQEQSARLKAEEANR-- 513 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +K+ F+ +S+ELR+PL I+G+T LL+ KL S +K +E I ++ + L+ Sbjct: 514 --LKDEFLAVLSHELRTPLNPILGWTKLLRAGKLDS--AKTDYALETIERNAKLQTQLIG 569 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD++ + G + LN + + L ++ +++ +I+I+ + D +G + D Sbjct: 570 DLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDPNVGQVLGDST 629 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+ +LSNA+ F+ G V ++ + V + G I D VF F Sbjct: 630 RLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGISPDFLPHVFESFRQA 689 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV + LHGG + S E + T R+P Sbjct: 690 DATITRKFGGLGLGLAIVRHLVELHGGTIYAESPGEDLGATFTVRLP 736 >gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 2213 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 12/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 ++TD +AE L A K+ F+ ++S+E+R+P+ IIG + L L+T L Sbjct: 1457 DITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTG----L 1512 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + KQ Y+ I ++S LL L+NDILD + V+AG M++ LND L+++ Q I K Sbjct: 1513 DRKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKT 1572 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDF 719 E + + + + + + D RL QI + +NA+ F+ KG V I K D+ Sbjct: 1573 REKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEKGEVVVSIEKVCVDDEQV 1632 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+VK+ G + ++ +F F R+ G GLGL+I + L GG +S+ Sbjct: 1633 TLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISVE 1692 Query: 776 SS 777 S+ Sbjct: 1693 ST 1694 >gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2] gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1] gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 925 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT+LL+ S+L + +Q Y+ I S+ Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLTTIQKSA 329 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L L DL+ + +A HE + + V D Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 + D QRL QI + ++ NA+ F ++G TV ++A + D SV++ G + Sbjct: 390 PI-QLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGL 447 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 E+ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 448 SEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496 >gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2] Length = 771 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 101/404 (25%), Positives = 177/404 (43%), Gaps = 46/404 (11%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 TV+ DL + + I+ + E ++ D R+ L N F+ L K + ++PGT Sbjct: 370 TVEADLRLR---------DAIETIPEAFVLWDADNRLVLCNSHFQRLHKLPDIAVAPGTS 420 Query: 480 IRNIAAT----------CSRYYNESDGWDLFAAIITSFD----DERKSLQGTLELLS--- 522 + C S G F A + ER++ G + Sbjct: 421 YETVIEVGQMPEIRTRLCDNSGGSSPGARTFEAQLADGSWLHISERRTKDGGYVAVGTDI 480 Query: 523 -------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569 D L ++ L +Q L + + A + EK A +A++ K Sbjct: 481 TRIKAHEQKLVDNDLRLRATVADLKISQYKLERQAIELADLARKYSEEKTRA-EEANQTK 539 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDIL 628 + F+ ++S+ELR+PL IIGF++++ + G+L S++ Q Y I S LL ++NDIL Sbjct: 540 SKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDIL 599 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRL 687 D++ ++AG M+L+ + L L E + +A + + + I D VADR+ + Sbjct: 600 DMSKIEAGRMRLDMEELDLARTLGESLKVVAGRAEHKQLELLSEIEDDI--PIVADRRAV 657 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 QI +LSNA+ F+ G V +++ + + ++G I + + F V + Sbjct: 658 KQILINLLSNAVKFTPDGGRVTVRSRTLPNAIVLMIADSGIGIAPQSLRRLGQPFEQVES 717 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I +S LHGG + + S+ T + +P Sbjct: 718 QLSKTYHGSGLGLAIAKSLTTLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3] gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3] Length = 523 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V AE+AL E A A K+ F+ ++S+E+R+PL +IG D L + +L+ Sbjct: 123 DVTAKVAAEKALIEAKAAAEAASRAKSDFLANMSHEVRTPLNGVIGIVDALSRT---ALD 179 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q++ V I AS L LV+DILD++ ++AG + L L++ L+ + + Sbjct: 180 PAQTEMVNLIRASGVTLERLVSDILDVSKIEAGELTLETRPFDLDEALDAPLDVMRVRAD 239 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E +R VI D + G FV D R+ Q+ +LSNA+ F+ +G + A ++ D Sbjct: 240 EKGLRFDVIRDDEARGVFVGDSTRIRQVIGNLLSNAVKFTHQGGVSVRIALDEDHDSLTH 299 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +++ G + +F+RF RR G GLGLSI + + + GG ++ S Sbjct: 300 LIVDIQDTGVGFNAEHAPRLFDRFSQADATITRRFGGTGLGLSICRALVEMMGGRITAES 359 Query: 777 SDEGVTTINCRIP 789 + + IP Sbjct: 360 TPGQGSRFRIEIP 372 >gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 686 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 7/238 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V A R+L E A+ K+ F+ VS+ELR+PL I+G DLL + LN Sbjct: 153 DVTGRVEAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTP---LN 209 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE S LL LV+ ILD + ++AG + L + L+ V + +A + Sbjct: 210 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 269 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 + + I + I+D V D R+ QI + NA+ F+ G + A G F Sbjct: 270 DKGLEIALDIADDLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARAGEGQREGF 329 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + ++++ G IPE+ +F F G GLGL+I + G + S+ Sbjct: 330 VLTIEDTGPGIPEERIPILFEEFEQGEDSASHEGTGLGLAITRRLVERMNGTIEARST 387 >gi|308272911|emb|CBX29515.1| hypothetical protein N47_J04960 [uncultured Desulfobacterium sp.] Length = 616 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 118/223 (52%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E+K+ + VS++L++PLT++ LL +G LN KQ + + S LLN++ND Sbjct: 382 ELKSGMISTVSHQLKTPLTSLRMSIYLLLEESVGVLNEKQIELLIAARDDSERLLNIIND 441 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LDL +++G ++ + L+ +V S + + + + L VAD ++ Sbjct: 442 LLDLNCIESGKSDVSLKPVSPQTLVRDVIDSFLPEARDKGVTMANAVPDDLPEVVADAEK 501 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 + +F+ +LSNA+ F+S G +V + A + + FSV++ G+ I + K +F F Sbjct: 502 IRHVFTNLLSNAIRFTSPGGSVSVLADLEPDNVRFSVEDTGAGITAEHLKHLFEPFYRAP 561 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++ GVGLGL+IV+ I HGG VS S T+ +P Sbjct: 562 GQDEKSGVGLGLAIVKEIIQAHGGDVSAESEIGKGTSFGFTLP 604 >gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] Length = 1051 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ ++ K E I + Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725 V IS V D RL Q+ +SNA+ F+ +GS + L++ FSV++ Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F R+ G GLGL+I + L GG + + S Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606 >gi|167647510|ref|YP_001685173.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349940|gb|ABZ72675.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 1942 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 16/260 (6%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ +A+ AL EK E L + K+ F+ ++S+ELR+PL +++ + +L + G+L+ K Sbjct: 1227 TEVEQAKAALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKMLSENAQGNLSDK 1286 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++ + I ++ T LL L+NDILDL+ +++G + L+ + L ++ +++ A + Sbjct: 1287 QVEFSKNIHSAGTDLLGLINDILDLSKIESGTVTLDIGEMAFTSLRDQTQRTFAQLAQDK 1346 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------- 717 I ++ D L S D +RL Q+ +LSNA F+ GS + + ++G Sbjct: 1347 KIDFQIDIDPALPRSMYTDDKRLQQVIKNLLSNAFKFTQVGSVRLSVSRAESGWASGNDH 1406 Query: 718 ------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 FSV++ G IPED + +F F R+ G GLGLSI L G Sbjct: 1407 LNKAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLG 1466 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S +T +P Sbjct: 1467 GELKVVSIPGSGSTFTLYLP 1486 >gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 893 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 16/245 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L + + L K+ + K+ F+ ++S+ELR+PL +++ + +L +K G+L ++ Y Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S + LLNL+NDILDL+ V+AG M++ + L +L ++ + N+ Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMQGYFSKSAESKNLEFD 598 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI----- 720 + +SD +D RL QI +LSNA+ F+ GS V L+ + N DFI Sbjct: 599 IEMSDDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLRVKKMNSIVTSDFIISGDV 657 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G I + + +F F R+ G GLGLSI L GG++++ Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARKFGGTGLGLSISLHLAKLLGGYITV-E 716 Query: 777 SDEGV 781 S+EG+ Sbjct: 717 SEEGI 721 >gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 578 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R +++KN F+ VS+ELR+PLT I G LL + + +++E + L+ Sbjct: 342 RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALLETERLVR 401 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +VNDILD+ +++G ++ +L+ +V S+ H ++I ++++ A Sbjct: 402 MVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTSV--QLWA 459 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 R +LQ + ++ NA+ FS +TV L A + +F V++ G IP + K++F+RF Sbjct: 460 ARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKTIFSRF 519 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + Q+ G GLGLSI +S I HGG + + S +T IP Sbjct: 520 QQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 568 >gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 676 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 22/241 (9%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKL 599 +F +V+D +RA E EA R +K++F+ ++S+E+R+PL I+G + LL KT Sbjct: 271 SFADVSDLIRAR---VEAEEASR----MKSAFLANMSHEIRTPLNAIMGLSQLLLKTGP- 322 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Q + +E + ++ LL ++ND+LD + ++ G +++ + L+ LL E+++ +A Sbjct: 323 ---SPQQRECLETMRSAGEGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMA 379 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ 712 E + + + D KL V D RL QI +LSNA+ F+ G V+ A Sbjct: 380 PAADERGLTLAIERDPKLPRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLAAALPYPPK 439 Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769 A D + F V++ G IPE++ + +F FV +A G GLGLSI + + L G Sbjct: 440 AEDAPTPVQFRVRDTGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLG 499 Query: 770 G 770 G Sbjct: 500 G 500 >gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 888 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 194/417 (46%), Gaps = 42/417 (10%) Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKV 435 N F + S HKD L T++ ++ S+ + W F +++ ++ E + L ++ Sbjct: 320 NTFIAHHPSRIHKDI--LAYECTMYNVI-SDSGEESFWSFAHDISERMRYEAQIKRLNRI 376 Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495 TI++L G+ V K N FR +++ E ++ R+ + N+ D Sbjct: 377 MDTTINNLPAGIVV-------KEINNDFRYVYRNRE------SYNRDHFSDNPVGKNDYD 423 Query: 496 GWDLFAAIITSFDD--------------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 + A +D E K G L +L ++ L + + Sbjct: 424 FYPPIVAEKKRQEDIEVAATGKGLHWIAEGKDRNGNLIILDKRKIKVDGDELSSPIIVSI 483 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++T+ +R L E +D +K++F+ ++S+E+R+PL I+GF+ L+ S Sbjct: 484 EWDITELEMIKRELQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESDDA- 542 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Y + + A++ LL L+N+ILDL+ +++G ++ ++ L++L E+ + + Sbjct: 543 --EERKTYYQIVEANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFR 600 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDF 719 E + SD L D+ R+ Q+ S ++ NA+ F+ +GS +K + +G Sbjct: 601 TPEGVQLVYEPSDESL-RIETDKNRVFQVISNLIGNAVKFTKEGS---IKYGYELVDGQI 656 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F V + G+ I + VF RF + Q G GLGLSI +S + GG +S+SS Sbjct: 657 VFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGQISVSS 711 >gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 627 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 131/257 (50%), Gaps = 10/257 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T+ L + L+ A+E K+ F+ +S+E+R+PL I G LL+ + Sbjct: 225 FEDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDME--- 281 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q +Y+ +I +S+ LLN++NDILD + ++A ++L LL++ + + + Sbjct: 282 MPPAQREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLR 341 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 + + ++ L V D RL QI + ++ NA+ F++ G V+ ++R GD Sbjct: 342 TQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFTAGGEIVVRASSRSRGDGT 401 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V+++G + + +++F F+ RR G GLGL+I + + L G +++ Sbjct: 402 VLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTITV 461 Query: 775 SSSDEGVTTINCRIPSK 791 +SS +T +P K Sbjct: 462 ASSPGNGSTFCFAVPLK 478 >gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 916 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 111/423 (26%), Positives = 199/423 (47%), Gaps = 50/423 (11%) Query: 386 ETHKDTWH-LPNGQTLHVIVTSNPRGGTI-WMFENLTVQVDLETKYNTLVKVQGETID-- 441 E +D WH + G+ H V + R G + W+ + +D + + + ++ E D Sbjct: 199 ELFRDMWHTIVLGKVWHGEVCNRARDGHLYWVNATVVPLLDAKGEPERYIAIRTEITDRK 258 Query: 442 ----------HLSE------GVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRN 482 HL E + ++ DG I+L N AF ++ T Sbjct: 259 RMEAQLSEQLHLVEELIENIPLPIYLKDGSGRYIRL-NRAFEQFFEVRREAFIGRTLHDL 317 Query: 483 IAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538 + A +R + E D DLFAA T +++ S G + +++ +++ + Sbjct: 318 LPAEDARQHAEMDA-DLFAAKGTQTYEATVHSQDG---IAHETIYRKAVLTRRDGSVSGL 373 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597 + V++TD RAE + EA A+ K+ F+ ++S+E+R+P+ +IG TDL L+T Sbjct: 374 LGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALET- 432 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L +Q +Y+ +S+ LL ++NDILD + ++AG +++ L+ L+ + + Sbjct: 433 ---ALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKP 489 Query: 658 IATKMHENNIRI--KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712 +A + HE +I I V+ D + FV D R+ Q+ ++ NA+ F+ +G + L+A Sbjct: 490 LALRAHEKDIEILSDVVHD--VPRFVKGDPSRIRQVLVNLVGNAIKFTEQGE-IALQADL 546 Query: 713 -ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 NG + F+V++ G I D +F+ F R+ G GLGLSI + L Sbjct: 547 MQLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVEL 606 Query: 768 HGG 770 GG Sbjct: 607 MGG 609 >gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 558 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 14/244 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD +AE L + EA A K+ F+ ++S+E+R+P+ IIG +L + L + + Sbjct: 151 DITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL---ALLTASD 207 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Y+ +I S LLN++NDILD + ++AG ++L+ ++ + ++ Sbjct: 208 VQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAK 267 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK--------AAR 714 E ++ ++ D + +A D+ R+ Q+ + ++ NA+ F+ +GS V+ A Sbjct: 268 EKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAGG 327 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ +FSV++ G IP D + +F F V + + G GLGLSI + + GG + Sbjct: 328 ESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRI 387 Query: 773 SISS 776 + S Sbjct: 388 WVES 391 >gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 612 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 5/258 (1%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ + +VTD E+AL A +AD ++ F+ +S+ELR+PL IIGF++++ Sbjct: 318 AEVVAVMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGFSEMIV 377 Query: 596 TSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + +++ ++ +Y + I+ S LL++VN ILD++ +++G ++ L Sbjct: 378 QEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRPALLNC 437 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 +A K EN + + + L D + QI ++SNA+ F+ +G TV + AA Sbjct: 438 CNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAAV 497 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + V + G I D K + F + RR G GLGLSIV+S + LHGG + Sbjct: 498 EGARLALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVALHGGEM 557 Query: 773 SISSS-DEGVTTINCRIP 789 S+ S DEG TT+ +P Sbjct: 558 SVESKLDEG-TTVTVMLP 574 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 10/241 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ +AE AL E A+ K+ F+ ++S+E+R+P+ ++G DLL S+ L Sbjct: 382 LDITERKQAEEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSR---L 438 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q + S+ LL ++NDILD + ++AG +L+ + L + + EV K Sbjct: 439 DENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKA 498 Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717 + NIR I I D + D RL Q+ ++ NA+ F+ G +++ +N Sbjct: 499 QDKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTENGQIFLGVSLMETTAENT 558 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F V++ G+ IP D +F+ F + RR G GLGL+I + GG + + Sbjct: 559 QLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVR 618 Query: 776 S 776 S Sbjct: 619 S 619 >gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC 30864] Length = 1474 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 26/254 (10%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++ +N+TD R A ++EAL+ +A+E K+ F+ ++S+E+R+PL I+G T ++ T Sbjct: 610 LVSIINLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 666 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651 + SLN++QS Y++ I S+ ILL ++NDILD + ++AG + N+ I N ++ Sbjct: 667 T---SLNNEQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 722 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707 + + S ATK N+ + D +L V D R QI ++SN + F++ GS Sbjct: 723 DLLFPSAATK----NLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFTTSGSVSLR 778 Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 +L + D+ + F V + G I D +F RF V ++ G GLGL I +S Sbjct: 779 CLLDSEVDDDHLLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 838 Query: 764 FINLHGGHVSISSS 777 + L GG + + S+ Sbjct: 839 LVTLMGGTIGVDST 852 >gi|150006465|ref|YP_001301209.1| two-component hybrid sensor kinase/response regulator [Bacteroides vulgatus ATCC 8482] gi|294777014|ref|ZP_06742472.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|149934889|gb|ABR41587.1| two-component system sensor histidine kinase, with a response regulator receiver domain [Bacteroides vulgatus ATCC 8482] gi|294449072|gb|EFG17614.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 616 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 128/216 (59%), Gaps = 13/216 (6%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++++K++F+ ++S+E+R+PL I+GF+ ++ ++ N+++ QY + + ++ L Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+N+ILDL+ +++G+M+ NY+ + L L +VK + + + ++++ + S V Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR RL Q+FS ++ NA F++KGS ++ + +F V + GS I +D +F+ Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGSISFGYKLKEK-EIVFHVADTGSGISDDKIDKIFD 422 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF+ Q +G GLGLSI + + GG +++ S Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQS 456 >gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3] gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3] Length = 1406 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 28/347 (8%) Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYN----------ESDGWDLFAAIITSFDDERKSLQ 515 LW+ ++R +P IR+I S+ D + FA + DE ++ Sbjct: 801 LWRFSDDR-NPLPPIRSITPRHSKILRMNWSTVDEQVHEDYKEQFAKKLRQAIDESGWIE 859 Query: 516 GTLELLSDSVLEYSII----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 L ++SD V + + + + +++TD+ A L EK +A +A+ K Sbjct: 860 SDLPIISDGVETWVSVRGQGDCFARRIIGVLIDITDNRNAFMELEEKGQAAEQANREKTQ 919 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ I G D+L + L +Q V+ I +SS L+ L++D L+L+ Sbjct: 920 FLANMSHEIRTPMNGIFGMLDVLAYQE---LTQEQRLLVDSIRSSSFQLMRLLDDTLNLS 976 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++ G ++ +T+ L ++ + +++ + I +I + V AD Q ++QI Sbjct: 977 KIEQGELESTPTTVNLLKIIEPTMIANSSRARMSKISFSIIVSKNFPTLVYADSQLIMQI 1036 Query: 691 FSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + +LSNA+ F+ KG V LK DN + SV + G I E+ K +F RF+ Sbjct: 1037 INNLLSNALKFTKKGG-VTLKMKWDSTPTSDNEYLVVSVSDTGIGISEEQKKVIFERFMQ 1095 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R G GLGL +V+ GG+V + S+ +T RIP Sbjct: 1096 AETSTSRYYGGTGLGLPLVQEIARFLGGNVDVQSTPGEGSTFIVRIP 1142 >gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 378 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 555 LTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 LTE+ ++L KA+ KN F+ +++LR+PL +I G + L+ +G L++ Q V Sbjct: 135 LTEQQKSLVDQLSKANAAKNKFLGMAAHDLRNPLASIRGLAEFLRDGVVGPLSADQLDLV 194 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I A+S +L +VN++LD+AT++AG +K++ + L DL+ + + N RI+ Sbjct: 195 QTIHAASQSMLTMVNELLDVATIEAGELKIDPAQHNLGDLIEKAVYLANIDAAKKNTRIE 254 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + D ++ Q+ +LSNA+ +S GS + + D + F VK+ G I Sbjct: 255 ITPPASPLYPSFDPAKMQQVVDNLLSNAVKYSPPGSRITVVLHGDGRECSFGVKDQGPGI 314 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE+ +F F +S G + GLGL+I H G ++ ++ G + Sbjct: 315 PENERDRLFKDFGRLSVKPTGGEKSTGLGLAICRKITEAHHGSITAANLPGGGCEFRVTL 374 Query: 789 P 789 P Sbjct: 375 P 375 >gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1006 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R +++KN F+ VS+ELR+PLT I G LL + + +++E + L+ Sbjct: 770 RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALLETERLVR 829 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +VNDILD+ +++G ++ +L+ +V S+ H ++I ++++ A Sbjct: 830 MVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTSV--QLWA 887 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 R +LQ + ++ NA+ FS +TV L A + +F V++ G IP + K++F+RF Sbjct: 888 ARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKTIFSRF 947 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + Q+ G GLGLSI +S I HGG + + S +T IP Sbjct: 948 QQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 996 >gi|171915988|ref|ZP_02931458.1| putative histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 476 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 20/220 (9%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ HVS+E+RSPLT+IIG +LL + G + +E I AS LL LVND+L Sbjct: 227 KSRFLAHVSHEIRSPLTSIIGHAELLAKNPDGKTGR---ECLEAIQASGRALLRLVNDLL 283 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVA- 682 DL+ ++ G +KL+ + + D+L+EV +HE IR K ++ ++ + + Sbjct: 284 DLSHMEVGRLKLDPGPVSVRDVLHEV-----ALVHEGAIREKGLAFICRTSPEVPALLEL 338 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCK 736 D +R+ Q+ ++SNA+ F+ +GS + + D F V + G I E K Sbjct: 339 DAERMKQVLDNLVSNALKFTQEGSIALEAFGTRVAGTHPRFDLQFRVSDTGMGISEKDQK 398 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F + RG GLGLSI + L GG +++ S Sbjct: 399 RIFRDYEQGTEHAAGRGAGLGLSISRQLVQLMGGTIALKS 438 >gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 842 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 16/233 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT +A KAD+ K F+ ++S+E+R+P+ IIG +D+L S L+++Q Q V+ I Sbjct: 448 LTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQEQCVDTIR 504 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS LL ++NDILDL+ ++AG M+++ L ++ + K+ E + Sbjct: 505 DSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQTFA 564 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730 +L V D RL QI +LSNA+ F+ GS V L +RD D V + G I Sbjct: 565 RELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGI 623 Query: 731 PEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 ED + VF RF + H G G GLGL+I GG +S++S++ Sbjct: 624 SEDQARHVFERFSQADAATTRHYG---GTGLGLTISNILAQRMGGGISLNSNE 673 >gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] Length = 769 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V DILD +++ G ++L+ + L ++N+V ++ + I + V Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +RL Q+ S +LSNA F+ +G V + R + +V + G I Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + VF F A RRG+GLGLSIV LHGG V +S+ Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 1749 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 AE LT+ A+ K+ F+ +S+E+R+PL IIGF++++ + G + N + +Y Sbjct: 1502 AEEELTQAKRQAENANSQKSDFLAKISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEY 1561 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S + +++L+ND+LDL+ ++AG + L ++ + + D++NE + + + + I Sbjct: 1562 LKDIRTSGSHIMSLINDLLDLSKIEAGKLDLQFTAVSIKDIVNECVAIMQPQANRERVII 1621 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728 + + + VAD + L QI +LSNA+ F+ G I+ A D G+ + V++ G+ Sbjct: 1622 RASLPDSVPNVVADPRSLRQIVLNLLSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGT 1681 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + + F + A G G GLGL + ++ + + I S+ + T + Sbjct: 1682 GMSAKDLSAALEPFRQLHTARHGS--GTGLGLPLTKALVEANRASFRIDSTPDQGTLVEI 1739 Query: 787 RIPSK 791 P++ Sbjct: 1740 SFPTQ 1744 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 167/345 (48%), Gaps = 23/345 (6%) Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503 S VA F +G I +N F +L E+N + H +A + + + W+ Sbjct: 533 STSVAEFSMNGTILDANATFLTLLGYEKNEVIGKHHSIFCSAQDAASASYRNKWEAL--- 589 Query: 504 ITSFDDERKSLQGTLELL----SDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554 + + +QG + L S+ + S PL NA + ++ +++T+ R E Sbjct: 590 -----NRGEFVQGEFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMIDITERTRMEND 644 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + +A K +F+ ++S+E+R+P+ IIGF++++ ++ + +Q +Y+ I+ Sbjct: 645 LKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTE---MQDEQRRYMNTIN 701 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL+L+NDILD A ++ G ++L L +L++ + ++ + N+ +++ D Sbjct: 702 NSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQLELD 761 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 S ++ R+ QI +L N++ F+ G ++ DN + FS+ + G IP+D Sbjct: 762 PNTASYYLGAPDRIRQILMNLLGNSIKFTEHGYVKLVVKQLDNHELSFSIIDTGIGIPQD 821 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLG +I + + L GG ++ S Sbjct: 822 RLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKS 866 >gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 883 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 18/254 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T E L E E ++D +K++F+ ++S+E+R+PL I+GF+ L+ T + Sbjct: 642 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 698 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY++ + ++ +LL L++DILDL+ ++AG + +N L ++ ++ K Sbjct: 699 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 757 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 N ++++ D L ++DR RL Q+ S ++NA+ F+ +G+ + D Sbjct: 758 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 814 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + + G I +M +F RFV S H G GLGLSI S + GG + + S Sbjct: 815 FYIADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 869 Query: 778 DEGVTTINCRIPSK 791 E + +P K Sbjct: 870 PEKGSCFWFTLPIK 883 >gi|119511392|ref|ZP_01630504.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] gi|119463937|gb|EAW44862.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] Length = 411 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 4/253 (1%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTS 597 M+ +++T+ +AE L++ E +++ E+K F+ V ++ R+PL N++ F++ LLK Sbjct: 157 MIAGIDITEYKQAESDLSQTLEQIKQLSELKAQFMSMVCHQFRTPL-NVVSFSNSLLKRH 215 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 K +++I + + +++DIL A +A + + + L + NE+ Sbjct: 216 INYCQEEKTGPLLDHIQSGVEQITKMLDDILFFAKAEAAKLNFDAKPLNLVEFCNELIAQ 275 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + T EN RI +S G+ + D++ L + S +L NAM +S GS V K + G Sbjct: 276 MQTNGSEN--RINFVSQGRYITACMDQKLLEPMISNLLDNAMKYSPIGSVVDFKLFCECG 333 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F V + G IP +F F ++ G GLGLSIV++ ++LH G++++ S Sbjct: 334 KVVFQVTDRGIGIPVADIPRLFEPFYRGSNIHHLPGTGLGLSIVKTLVDLHRGYIAVESE 393 Query: 778 DEGVTTINCRIPS 790 TT +P+ Sbjct: 394 LGVSTTFTMMLPA 406 >gi|158319283|ref|YP_001511790.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158139482|gb|ABW17794.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 556 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL K E R A+ +KN + +VS++LR+PLT+I+G+ +LLK + + + QY+ Sbjct: 314 ALQTKIEEERAAEMLKNELITNVSHDLRTPLTSIMGYLNLLKDKRYET-EEEAYQYLNIA 372 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L +L+ D+ + A + +KLN S + LN L++++ + + + E + K Sbjct: 373 YGKSEKLKDLIQDLFEYAKLTNEGVKLNLSEVHLNSLIDQLTEELVPILDEKQLSFKKDI 432 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + +AD +++++F +L+NA+ SS G+ ++++ + D + I V+N G I + Sbjct: 433 SKEDTIVLADADKMVRVFENLLTNAIRHSSVGTEILVQTSVDEDNVIICVENTGEPISSE 492 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + +F+RF V + G GLGL+I ++ INLH G + Sbjct: 493 YLERIFDRFFKVEKSRTSNSAGSGLGLAISKNIINLHKGSI 533 >gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1051 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ ++ K E I + Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725 V IS V D RL Q+ +SNA+ F+ +GS + L++ FSV++ Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F R+ G GLGL+I + L GG + + S Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606 >gi|228927068|ref|ZP_04090133.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832575|gb|EEM78147.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 444 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S++ V ++A ++ G + VK++G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSNENGKVYIEATKNEGQAVIKVKDDGIGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864] Length = 1482 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 26/254 (10%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++ V++TD R A ++EAL+ +A+E K+ F+ ++S+E+R+PL I+G T ++ T Sbjct: 600 LVSIVDLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 656 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651 + SLN +QS Y+ I S+ ILL ++NDILD + ++AG + N+ I N ++ Sbjct: 657 T---SLNDEQSDYLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 712 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707 + + S ATK N+ + D KL FV D R QI ++SN + F++ GS Sbjct: 713 DLLFPSAATK----NLLLSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTTGSVSLR 768 Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 +L D+ + + F + + G I + +F RF V ++ G GLGL I +S Sbjct: 769 CLLDEDVDDQNMVVRFEIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 828 Query: 764 FINLHGGHVSISSS 777 +NL GG + + S+ Sbjct: 829 LVNLMGGTIGVDST 842 >gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 892 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 135/259 (52%), Gaps = 14/259 (5%) Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSPL 584 I P+ N + ++T FV + + + ++ L E ++D +K +F+ ++S+E+R+P+ Sbjct: 478 ISPVLNEEGVITNFVAIKEDITEKKKLWSELIAAKEHAEESDRLKTAFLANISHEIRTPM 537 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G +++LK L +QS Y++ I S LL L+NDI+D++ ++AG + S Sbjct: 538 NGIVGLSEILKDPDLS--KEEQSLYIDLIDQSCQRLLYLINDIIDISRIEAGKTNVKISR 595 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 +N L ++ + +R+ +SD + D +L QI + +L NA+ F Sbjct: 596 TPVNTTLRDLHAFFKPLAEQKGLRLSCTTGLSDSE-SVIETDSTKLTQILTNLLQNALKF 654 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 + +G + AR+ F V ++G I DM +F RF N+ G GLGLS Sbjct: 655 TREGH-IDFGYARNKNTLEFYVADSGIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLS 713 Query: 760 IVESFINLHGGHVSISSSD 778 I +++I + GG +S+ S++ Sbjct: 714 ISQAYIEMLGGLISVKSTE 732 >gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 882 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 18/254 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T E L E E ++D +K++F+ ++S+E+R+PL I+GF+ L+ T + Sbjct: 641 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 697 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY++ + ++ +LL L++DILDL+ ++AG + +N L ++ ++ K Sbjct: 698 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 756 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 N ++++ D L ++DR RL Q+ S ++NA+ F+ +G+ + D Sbjct: 757 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 813 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + + G I +M +F RFV S H G GLGLSI S + GG + + S Sbjct: 814 FYIADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 868 Query: 778 DEGVTTINCRIPSK 791 E + +P K Sbjct: 869 PEKGSCFWFTLPIK 882 >gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 857 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 14/224 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K F+ ++S+E+R+P+ IIGFT + LKT L++KQ +Y+ I S L+ L+NDI Sbjct: 354 KQQFLSNMSHEIRTPMNAIIGFTKVVLKTE----LSAKQKEYLTAIKMSGDALIVLINDI 409 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LDLA VDAG M + L + + TK+ E N+ + + D ++ V D R Sbjct: 410 LDLAKVDAGKMDFEETPFRLAFSITAMLHLFETKIQEKNLALVKVYDEEIPEVLVGDPVR 469 Query: 687 LLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 L QI ++SNA+ F++KG S +L A D F+V + G I +D ++F F Sbjct: 470 LHQIILNLVSNAVKFTNKGQITVSVRMLHADADKVTIEFAVADTGIGITKDKIPTIFENF 529 Query: 743 VSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 A G R G GLGL+I + + GG + + S E +T Sbjct: 530 -QQASSGTSRLYGGTGLGLAIAKQLVEKQGGTIRVESVVEQGST 572 >gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1831 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1402 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1462 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715 V +S + D QRLLQ+ +LSNA+ F+ GS ++++ ARD Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1522 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1523 GSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1582 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1583 LLGGEIHAQSEPGRGSTFTLYLP 1605 >gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] Length = 769 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V DILD +++ G ++L+ + L ++N+V ++ + I + V Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +RL Q+ S +LSNA F+ +G V + R + +V + G I Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + VF F A RRG+GLGLSIV LHGG V +S+ Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] Length = 651 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L +A++ K++F+ ++S+ELR+PL +IIGF +L G LN KQ QY+ I S Sbjct: 403 EELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGELNEKQKQYIFVILDSGNH 462 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L++DIL +D + ++ + +ND++ V S+ + + ++ + + Sbjct: 463 LLALIDDILHFVKLDRHVETISLKEVNVNDIIENVSMSVMPLVQSKDQKLVIDIKPEDTG 522 Query: 680 FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736 A D Q++ Q+ +LSNA+ F+ + + ++ N + SV +NG I ++ K Sbjct: 523 LTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFRPANEAAYFISVIDNGIGIEDEFKK 582 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF+ F V+++ +GVGLGL+I + +H G + + + G ++ +P + Sbjct: 583 KVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQGRIWLEDNPSGGLIVHVVLPVR 639 >gi|251773086|gb|EES53640.1| putative multi-sensor signal transduction histidine kinase [Leptospirillum ferrodiazotrophum] Length = 307 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 4/232 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +R + I+ FV +VS+E+R+PLT+I G+ + L L +S ++ IS S+ L Sbjct: 71 IRGLERIRKDFVANVSHEIRTPLTSIRGYAEALSDGALADPELAKS-FLGIISTSADRLS 129 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+L+L+ +++G + L S I + L + +++ ++ + +R++ + +F+ Sbjct: 130 RLVNDLLELSRLESGTVDLRLSPIEMGALADRLREEFFDRLSQKEMRLEA-DFSRPFTFI 188 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +D L + +L NA+ +SS GS+V L AA D+ V++ G IPE+ +F R Sbjct: 189 SDDSLLHLVLVNLLDNAIKYSSPGSSVRLGAAMDDEGIQIDVEDRGMGIPEEELPRIFER 248 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V + G GLGLSIV + L G V++ S+ TT++ +PS+ Sbjct: 249 FYRVDRSRSPAVPGTGLGLSIVRHVMTLLSGRVTVRSALGKGTTVSLHLPSR 300 >gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 679 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N AL KA+ +K+ F+ +S+ELR+PL IIGF ++L+ GSL+ Q +YV I Sbjct: 437 LQMANVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQKEYVTDIH 496 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL+++N+ILDL+ ++ G M L Y + D +N+ I + I + Sbjct: 497 SSGHHLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGISVHTNIQ 556 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733 AD+ + QI +LSNA+ F+ + + + + + F + + G I PED Sbjct: 557 DNTPLLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDNSLQFEIVDTGIGIKPED 616 Query: 734 MCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 K F++ ++ R + G GLGL + + + LHGG + Sbjct: 617 KEKLFEAFHQADASLTR-EYEGTGLGLHLTKRLVELHGGKI 656 >gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 606 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%) Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326 T E+GN K Y I + GI I + + N +++ H I NL V I ++D++ Sbjct: 89 TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 141 Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385 + V+L + D+ + D L + LPE++ K EN ++ Sbjct: 142 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 194 Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439 + + ++ PN T + +T+ + T++ + L + VD K+Q E+ Sbjct: 195 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 252 Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492 D+ G A F R A RS ++ EE GT + I S ++ Sbjct: 253 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 305 Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543 E D +I S D + G +VL + P N ML Sbjct: 306 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 365 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L E +AD +K++F+ ++S+E+R+PL I+GF+ LL+ + Sbjct: 366 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 422 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y I ++ +LL L++DILDL+ ++AG + + L NE+ QS+ + Sbjct: 423 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 482 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E + I + + +F +D+ RL Q+ ++NA+ F+S+GS VI R NG+ + FS Sbjct: 483 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 539 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +++F RFV G GLGL I +S + GG + + S Sbjct: 540 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 591 >gi|126724550|ref|ZP_01740393.1| hypothetical protein RB2150_11981 [Rhodobacterales bacterium HTCC2150] gi|126705714|gb|EBA04804.1| hypothetical protein RB2150_11981 [Rhodobacterales bacterium HTCC2150] Length = 398 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 37/402 (9%) Query: 161 GSC-----AFLRILSLDGIYSELAETTLKCKKLSNHISVF-----KVLFDSLDFLVWHRD 210 G+C F+R S + S + ETT K + F K + + + L W + Sbjct: 10 GACFALLVLFIRPKSNVTVGSNVHETTRDHAKPRMLVEAFPKELLKWITEQKNLLAWVEN 69 Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE----KNFCETV 266 D++WA+ + T G + + A RK E+ SA + KNF V Sbjct: 70 SNADVIWASPAIADEL-TNGSLIESAFEILRKPCGEKPGHAQFRPSASKSDPSKNF--EV 126 Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIF 322 + E GN + +A++ S Q+++ + L N L+ +AIF Sbjct: 127 TNKEVGNQTIF-------------LAVETSHASETKSQMSNFVQTLTNTFALLSTGLAIF 173 Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382 D+NR L N + +L ID A+L P+ D LLE +R+ L E ++KTW+E++ ++ Sbjct: 174 DRNRQLVMFNPALGDLTRIDPAWLTRKPTLDALLERMRNDQTLGEPKDFKTWRESLPNLV 233 Query: 383 KSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440 K + T+++ W L G+TL V+ +P G + +FE+++ +V + + V+V + Sbjct: 234 KQAVNGTYEEIWTLATGETLRVVGRPHPHGAIVLLFEDISSEVSADRRQRLEVEVTQNAL 293 Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D ++E +++F DG + +N F ++ G +I + T + ++ + W Sbjct: 294 DTINEAISIFSHDGEMLTANKPFVQMFDLNPFDNLEGINIIHATKTWAEFFGANPIWGDT 353 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 +T + R S + +P+PN T++ F Sbjct: 354 REFVTDIQN-RVSWHNDILFNDKQTSRVRFVPMPNGTTLVGF 394 >gi|270000570|ref|NP_844382.2| sensor histidine kinase [Bacillus anthracis str. Ames] gi|269850218|gb|AAP25868.2| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 465 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 233 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 291 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 292 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 350 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 351 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 407 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 408 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 464 >gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 112] Length = 771 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V DILD +++ G ++L+ + L ++N+V ++ + I + V Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +RL Q+ S +LSNA F+ +G V + R + +V + G I Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + VF F A RRG+GLGLSIV LHGG V +S+ Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602 >gi|153939075|ref|YP_001392896.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|152934971|gb|ABS40469.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|295320873|gb|ADG01251.1| sensor histidine kinase [Clostridium botulinum F str. 230613] gi|322807867|emb|CBZ05442.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 469 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + KQ+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KLN I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116] gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116] Length = 932 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S I + D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2] gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2] Length = 925 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K EA + A+ +K+ F+ +S+ELR+PL ++GFT L KT LN Q Y++ I S Sbjct: 279 KKEA-QDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTP----LNKHQKDYLDTIELS 333 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 + LL ++NDILD + ++AG M+L L D +NEV +A H+ N+ + + I D Sbjct: 334 ANSLLAIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDN 393 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731 S + D R QI ++SNA+ F+ G +I R + ++ ++G I Sbjct: 394 VPDSLIGDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSGIGIS 453 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + ++F+ F R+ G GLGL I + + GGH+S++S+ Sbjct: 454 ANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSA 501 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] gi|300073351|gb|ADJ62750.1| Hpt sensor hybrid histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 14/251 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +A T+L + ++ R L + EA A + +F+ +S+E+R+P+ ++G LL Sbjct: 55 HALTLLRLLR--ENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLL 112 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 ++++L +++Q+++ + I S+ LL +VND+LD + +D G M + L ++ Sbjct: 113 RSTRL---DTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEAS 169 Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709 ++++ K E +R+ D +L V D R+ QI +L NA+ F+ G ++ Sbjct: 170 AEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQA 229 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFIN 766 L+ D+ F V+++G + ED + +F+ F S+ R Q G GLGLSI + + Sbjct: 230 LQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTR-QYGGTGLGLSICKRLVE 288 Query: 767 LHGGHVSISSS 777 L GG + + S+ Sbjct: 289 LMGGSIGVESA 299 >gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 399 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V E A+ + A + A+ +K F VS+ELR+PLT++ G +LL + + G + ++ S+ Sbjct: 152 VELECAVVQSTLAAQDAERVKRDFTALVSHELRTPLTSVHGSLELLASGRFGEMQAQASR 211 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 VE ++ L+ L ND+LDL+ V +G ++L + + L D++ IA + Sbjct: 212 LVEIAVKNTDRLVRLANDVLDLSRVQSGQLRLRPAPVELADVVENA--VIAVEGTAERCH 269 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +++ + D RL+Q+ + +L+NA+ S G V + + + V+++G Sbjct: 270 VPLVTRKDPVTVRGDADRLVQVVTNLLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGM 329 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I +D K +F FV A G G GLGL+I + HGG +++ S Sbjct: 330 GITDDEVKRIFEPFVQLGAKSG---GAGLGLAITRGIVESHGGTIAVES 375 >gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 951 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 498 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + D K+ S D RL Q+ S +LSNA+ F+ G + RD Sbjct: 555 YLPLVVKKRLTLYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 613 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 674 ESEPGLGSLFGVRIP 688 >gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 807 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ + Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ +++G + S +N L E+ +S+ K+ Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++++ + L AD+ RL Q+ S ++NA+ F+ GS + + +G F Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP + K+VF+RFV S H G GLGLSI +S + GG + + S + Sbjct: 731 YVRDIGMGIPRNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785 >gi|196039677|ref|ZP_03106981.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196029380|gb|EDX67983.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 453 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L+ LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIQLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSYKNGKVYIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---AIGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon GZfos9E5] Length = 424 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 38/309 (12%) Query: 516 GTLELLSDSVLEYSIIPLPN----AQTMLTFVNVT----DSVRAE---RALTE----KNE 560 G+ E+ S+ E +I +P +L+ + +T RAE R L E KN Sbjct: 111 GSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEEEKRRLMEELETKNA 170 Query: 561 ALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 L+KA E +K F+ S+ELR+PLT + +L+ +G L+ KQ + + Sbjct: 171 ELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKKQEKSI 230 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----N 665 E + + T L NL+ DILDL+ ++AG +KL++ ++ LND + E A KM E Sbjct: 231 EVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAVKE-----AIKMQEAFAKGK 285 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 NI I ++ + + D +RL Q +L+NA+ FS K VI++ R + FS+ + Sbjct: 286 NIEISA-KLAEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVQFSITD 344 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + K +F F + ++ + G GLGL+I + I H G + S +T Sbjct: 345 YGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404 Query: 784 INCRIPSKE 792 IP+K+ Sbjct: 405 FYFVIPTKQ 413 >gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 768 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +R +R+L +A +AD +K+ + VS+ELR+PL I G+ ++L+ ++ +L Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 428 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + Q ++ I S+ L +V DILD +++ G ++++ + + L ++ + T Sbjct: 429 EQQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 488 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ + ++SNA+ F+ G V + +RD+ + V + Sbjct: 489 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 548 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G IP VF+ F ++ RRG+GLGLSIV LHGG V + S+ Sbjct: 549 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVESA 602 >gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LRKA E+K+ F+ ++S+E R+P+++I LL G LN++QS+ V +I Sbjct: 49 LDTQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQ 108 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A++ ++V+D+LDLA ++AG + ++ + + DL ++ + + Sbjct: 109 ATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPELNLVFEEP 168 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L + D ++L QI +SNA+ F+ +G + A D FSV + G I + Sbjct: 169 RNLPALFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGERVRFSVADTGIGIAPEF 228 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG---VTTINCRI 788 VF F V + + + RG GLGL++ L GG V + S EG T+ R+ Sbjct: 229 HARVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLPVRL 288 Query: 789 P 789 P Sbjct: 289 P 289 >gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 761 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E ++D +K++F+ ++S+E+R+PL I+GF++L+ S+ Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M + LN L+NE+ + M Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631 Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E +R++V ++ VA D RL Q+ S ++NA+ F++ G + GD + Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K VF+RF Q G GLGL+I + GG + + S Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743 >gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium etli GR56] Length = 332 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+V +RAE A + +A A++ K+ F+ VS+ELR+PL I+GF+D+L G Sbjct: 37 VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 94 Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N +Q +YV + S LL++VN +LD++ ++AG +L ++ + + +A + Sbjct: 95 ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 154 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + LG VAD++ + QI ++ NA+ F+ G V + AA +G Sbjct: 155 AKSKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGILKL 214 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I D + FV + RR G GLGLS+V+ + LHGG+ +I+S Sbjct: 215 TVSDTGIGIAADKLAMLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 274 Query: 780 GVTTINCRI 788 T I I Sbjct: 275 EGTIITIEI 283 >gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis Och 149] gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis Och 149] Length = 752 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 190/391 (48%), Gaps = 43/391 (10%) Query: 417 ENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 EN V+ DL + + +V+ ++I+ +++G A + PD + ++N ++ +++ E+ Sbjct: 59 ENKRVKSDLSAAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED- 117 Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSII 531 + PG T ++ E I + D + + Q +E + + E II Sbjct: 118 MQPGVSY----VTVLQFLTEEG--------IVNIGDMQPAEWRQKMIERVQSAEPEAVII 165 Query: 532 PL-------------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 L P+ + +N+T +V+ E L + A K++F+ ++S+ Sbjct: 166 KLWNNEYIRMIDRRGPDGDIISLGINITAAVQYEEQLKAARASAEAASRAKSAFLANMSH 225 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+P+ ++G D+L + L+ +Q YV+ I S LL ++ND+LD + ++A + Sbjct: 226 EIRTPMNGVVGMADVLTET---PLSEEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKL 282 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697 +L+ L ++EV + + + + I + V L S F+ D RL QI + +L N Sbjct: 283 QLHPEPFNLEKSIHEVLRLLQSIARDKGILLCVDYSLLLTSDFIGDPGRLRQILTNLLGN 342 Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSIPEDMCKSVFNRF--VSNAHRGQ 750 A+ F+++GS + + + + G I V+ + G IPEDM VF F V + Q Sbjct: 343 AVKFTTEGSVTVRVSGKPDEATGKVIVQVRVEDTGIGIPEDMIDHVFGEFNQVESERNRQ 402 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 G GLGL+I + I + G + + +S+EGV Sbjct: 403 FDGTGLGLAITKQLIKMMDGQIWL-TSEEGV 432 >gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1031 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 335 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 394 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667 E I ++ LLNL+NDILD++ V+AG +++ N S L + L + Q +A E + Sbjct: 395 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 451 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 V I G DRQRL QI +LSNA+ F+ GS ++ + + F V+++ Sbjct: 452 AFTVDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDS 511 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 512 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 564 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 11/264 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 AQ + D R + L NE L +A +K+ F+ ++S+E+R+P+ ++G T+LL Sbjct: 782 QAQKRQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELL 841 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 L +Q + VE I S LL ++NDILD + ++AG ++L L + + +V Sbjct: 842 LEM---DLTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDV 898 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 A + + + + + D RL Q+ S ++ NA+ F+ +G V+++A Sbjct: 899 ITLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTERGE-VVVEAEL 957 Query: 715 DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + D + SV++ G IP D +F F RR G GLGL+I + + + Sbjct: 958 ERLDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEM 1017 Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791 GG + + S +T RIP + Sbjct: 1018 MGGTIGVESEVGKGSTFTVRIPFR 1041 >gi|168181011|ref|ZP_02615675.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] gi|226950998|ref|YP_002806089.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|182668143|gb|EDT80122.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] gi|226843174|gb|ACO85840.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 469 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + KQ+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KLN I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains [Bradyrhizobium sp. BTAi1] Length = 1695 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 20/260 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L KQ ++ Sbjct: 1000 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTMKQVEF 1059 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + ++ I+ +LL V + + + Sbjct: 1060 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSF 1119 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719 + D L S V D +RL Q+ +LSNA F++ G V LK + G + Sbjct: 1120 NIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSAEHPVLNT 1178 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 F V + G IP+D K +F F A G R G GLGL+I NL GG Sbjct: 1179 APAVIAFEVSDTGIGIPQDKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGE 1237 Query: 772 VSISSSDEGVTTINCRIPSK 791 + + S+ +T +P K Sbjct: 1238 IHLKSAPGKGSTFTLYLPLK 1257 >gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 761 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E ++D +K++F+ ++S+E+R+PL I+GF++L+ S+ Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M + LN L+NE+ + M Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631 Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E +R++V ++ VA D RL Q+ S ++NA+ F++ G + GD + Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K VF+RF Q G GLGL+I + GG + + S Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743 >gi|260774547|ref|ZP_05883460.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260610453|gb|EEX35659.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 642 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 2/212 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RK D++K+ F+ +S+ELR+PLT+I G +LL +GS++ K + ++ L Sbjct: 412 RKLDKMKDQFISTISHELRTPLTSIKGSLNLLAGGAVGSISDKAQALLVTAERNAQRLTT 471 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+LD+ + AG M + + L LL+E S+++ ++N+ ++ Sbjct: 472 LINDLLDMEKLVAGKMPMTFLKQPLGPLLDETIDSLSSYAQQHNVVLQCSGSWPAVQVNV 531 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D QRL+Q S +LSNA+ FS +G + +K + + + V++ G + + +F RF Sbjct: 532 DGQRLIQALSNLLSNAIKFSPQGEAITIKVQQQDTNIHILVRDRGQGVAPEFEDRLFQRF 591 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 R+ G GLGL+I + GG V Sbjct: 592 SQADSSDTRKLPGTGLGLAITQEICQQLGGSV 623 >gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] Length = 949 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G +IL ARD Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E IN+ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTIRIP 689 >gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1285 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 128/240 (53%), Gaps = 8/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT+ E A++ K+ F+ ++S+ELR+PL I+GFT LL ++ SL+ KQ +YV I Sbjct: 807 LTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLL--ARDSSLSDKQHEYVGIIG 864 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+L+ND+L+++ ++AG + LN + L LLN +++ K +++ Sbjct: 865 RSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEEMFQLKAQSKGLQLIFDCH 924 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSI 730 + ++ D +L QI ++ N + F+ GS VIL+ + F V++ G I Sbjct: 925 PDVPQYIKTDESKLRQILINLIGNGIKFTEVGS-VILRVKLSLLSTMTIDFEVEDTGLGI 983 Query: 731 PEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++F F+ + R + G GLGL I + F+ L GG++S+ S+ + IP Sbjct: 984 APEELDTLFQPFIQTVSGRKSQEGTGLGLPISQKFVQLMGGNISVKSNLNKGSMFRFEIP 1043 >gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Plautia stali symbiont] Length = 950 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ VR E++L E A +A + K+ F+ VS+ELR+PL IIG D+L+T S Sbjct: 445 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTK---S 501 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L V ++ SS++LL +++DILD + +++ +K+ +++N + + + Sbjct: 502 LPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSL 561 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + V + + + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 562 VVRKRLTLYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVKEGYLA 620 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G IP +F+ F QR +G GLGL+I E IN+ G + + S Sbjct: 621 FRVRDTGVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 680 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 681 GMGSQFVVRIP 691 >gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC 30864] Length = 1432 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 26/254 (10%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++ +N+TD R A ++EAL+ +A+E K+ F+ ++S+E+R+PL I+G T ++ T Sbjct: 591 LVSIINLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 647 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651 + SLN++QS Y++ I S+ ILL ++NDILD + ++AG + N+ I N ++ Sbjct: 648 T---SLNNEQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 703 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707 + + S ATK N+ + D +L V D R QI ++SN + F++ GS Sbjct: 704 DLLFPSAATK----NLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFTTSGSVSLR 759 Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 +L + D+ + F V + G I D +F RF V ++ G GLGL I +S Sbjct: 760 CLLDSEVDDDHLLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 819 Query: 764 FINLHGGHVSISSS 777 + L GG + + S+ Sbjct: 820 LVTLMGGTIGVDST 833 >gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] Length = 831 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 125/243 (51%), Gaps = 10/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + +VT E L + EA A K F+ ++S+E+R+P+ I+G TDLL S + Sbjct: 145 YRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLLLDS---A 201 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q Y++ + +S+ LL L+NDILD + ++AG + L ++ L+ E +++A + Sbjct: 202 LAPEQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALR 261 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 H+ + + ++ D R+ Q+ + ++ NA+ F+ +G + D D Sbjct: 262 AHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGNAIKFTERGEIELDVTVVDTDDRH 321 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + +V++ G IP + +++F F + R+ G GLGL+I + + L GG + + Sbjct: 322 ATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRV 381 Query: 775 SSS 777 S+ Sbjct: 382 QST 384 >gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 483 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 23/251 (9%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS------------ 607 + + + +E+KN F+ VS+ELR+PLT I G+T L ++ G+ + +S Sbjct: 234 QEIMRQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGRSDIRENAGVPDRR 293 Query: 608 ---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + +E I+ S L LV ++LD + +AG +KLN + L D LN +K + Sbjct: 294 VYLNLDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKVALVDTLNYIKTQM 353 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + ++ + L +AD R+ Q+ +L NA F+ G V +KA N Sbjct: 354 MPRAKRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAGGRVRVKAESANDS 413 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V++ G IP + V +F + ++ G GLGL+I + + LHGG + I+S+ Sbjct: 414 VRIIVEDTGCGIPPEDLPHVTKKFYK--AKSKQPGSGLGLAICDEIVRLHGGRMEITSAP 471 Query: 779 EGVTTINCRIP 789 T + +P Sbjct: 472 GKGTRVEVILP 482 >gi|148381482|ref|YP_001256023.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|153933607|ref|YP_001385857.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153934677|ref|YP_001389264.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|148290966|emb|CAL85102.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|152929651|gb|ABS35151.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152930591|gb|ABS36090.1| sensor histidine kinase [Clostridium botulinum A str. Hall] Length = 469 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + KQ+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KLN I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 827 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E +A+ +K F+ +S+E+R+P+ IIG LL+ + L + +Q + V+ S Sbjct: 314 LVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHL---SQQQRRLVDDSS 370 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL ++NDILD + V+A ++L+ + L + +++ A K NI + ++ Sbjct: 371 NAAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVG 430 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIP 731 + F+ D RL Q+ + +LSNA+ F+ G V L A D G+ +F+V + G I Sbjct: 431 DEAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIE 490 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +D + +F F R G GLGL+I + L GG + + S Sbjct: 491 KDKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVES 537 >gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 934 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 238 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 297 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LLNL+NDILD++ V+AG +++ + L+ ++ E + Sbjct: 298 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLAFT 357 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I G DRQRL QI +LSNA+ F+ GS ++ + + F V+++G Sbjct: 358 VDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 417 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 418 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 467 >gi|323138790|ref|ZP_08073854.1| histidine kinase [Methylocystis sp. ATCC 49242] gi|322395938|gb|EFX98475.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 574 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 8/218 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ VS+E+R+PL ++G LL ++L +++Q+ YVE I+ SS L L++DIL Sbjct: 66 KSRFLATVSHEIRTPLNGVMGLAQLLAMTRL---DAEQASYVEAINDSSRSLAQLIDDIL 122 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + ++AG ++L T L L+ V + +A + + I I+ D RL Sbjct: 123 DFSKIEAGKLELRRETFALAPLVEGVVELLAPRALAKGLEIASHIAPEAPQEMEGDPARL 182 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ ++ NA++F+ G V +K RD F V++ GS +PE ++F F Sbjct: 183 RQVLVNLIGNAVNFTDHGG-VGVKVGRDGEMLRFEVQDTGSGVPEAARAAIFEEFEQGDA 241 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSIS-SSDEGVT 782 RR G GLGL+I + GG ++++ +S EG T Sbjct: 242 SETRRHGGTGLGLAISRRLVAQMGGVLTLAVTSPEGST 279 >gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] Length = 497 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 135/239 (56%), Gaps = 12/239 (5%) Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 NEALRKA DE+K+ F+ ++S+E+R+PL I+GF+ LL L ++ I Sbjct: 262 NEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLDLTKDDIIEFTSLIEK 321 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S +L+ L++DILDL+ +++ M+ N+ I L+ +LNE+ + M + + + + G Sbjct: 322 NSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNM-KKGVELLLDLPG 380 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 + + D RL Q+ + +++NA+ F+S+G+ I + A N IF V++ G+ + +++ Sbjct: 381 QEITISTDPTRLSQVINNLVNNAIKFTSEGNICIGYRPATSNRVKIF-VEDTGTGMAKEV 439 Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F+RF ++G ++G GLGL+I + G + ++S+ T +P K Sbjct: 440 IEHIFDRF----YKGDAFKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILPLK 494 >gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 757 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 3/260 (1%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L + T+L +VT S AE L + + +A+ K+ F+ +S+ELR+PL I+G ++ Sbjct: 489 LGDGGTLLIATDVTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTPLNAILGLSE 548 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L + +K+ +Y+ + + ILL+ ++DIL+ A +DA + + Sbjct: 549 TLMLMEDRLSPAKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVA 608 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 EV + + ++R++ L S +AD + + QI +LSNA+ FS K V L Sbjct: 609 EVVRLMRVVARSRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSPKHGVVQLMV 668 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG-QRRGVGLGLSIVESFINLHG 769 +D FSV ++G IP D +F F V N G GLGLSIV+S ++ + Sbjct: 669 IQDGSRLRFSVSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSIVKSLVDRNA 728 Query: 770 GHVSISSSDEGVTTINCRIP 789 G V++ S+ TTI+ P Sbjct: 729 GAVAVDSTPGRGTTISVWFP 748 >gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1136 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 19/269 (7%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELR 581 A +LTF++ TD ++ L ++LR A+ K+ F+ ++S+ELR Sbjct: 853 AGAILTFIDETDLRNTQKDLEASIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELR 912 Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL ++GF ++ GSL N + +Y+ I S LL L+ +LD++ ++AG L Sbjct: 913 TPLNAVLGFAQIMADEMWGSLGNDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTL 972 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 S + ++D++ + ++++ + I + L D + +I +L NA+ Sbjct: 973 RESNVNISDVIVTSMRLLSSQAENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALK 1032 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLG 757 F+ G V L A+ D V++ G I V F R +R GVGLG Sbjct: 1033 FTPAGGAVTLTASHDQSGVTICVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLG 1092 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINC 786 L I +S + LHGG +SI S EG T C Sbjct: 1093 LPITKSLMELHGGTLSIDSK-EGKGTTAC 1120 >gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 761 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E ++D +K++F+ ++S+E+R+PL I+GF++L+ S+ Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M + LN L+NE+ + M Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631 Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E +R++V ++ VA D RL Q+ S ++NA+ F++ G + GD + Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K VF+RF Q G GLGL+I + GG + + S Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743 >gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1398 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F N R E AL + A A+ K+ F+ ++S+E+R+P+ +IG +LL + Sbjct: 841 FTNAELRFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDT---D 897 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q + + + AS LL ++NDILD + ++AG ++L + L LL + K Sbjct: 898 LSDEQRDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLK 957 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD 718 E N+ + ++ F D R+ QI + + NA+ F+ G+ + + + +NGD Sbjct: 958 AVEKNLEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGD 1017 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + FSVK+ G IPE +F F R+ G GLGL+I + L GG + + Sbjct: 1018 AVLRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGV 1077 Query: 775 SSSD 778 S + Sbjct: 1078 ISHE 1081 >gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1069 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 19/255 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L E E A K+ FV ++S+E+R+P+ +IG +LL + L Sbjct: 304 DITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PLT 360 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y I +S LL ++NDILD + ++AG + L ++ + EV +A + H Sbjct: 361 PEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAH 420 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKA 712 + I I G D RL Q+ + ++ NA+ F+ +G V+ A Sbjct: 421 AKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSKEEKSAPA 480 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 G + F VK++G I E+ K +F F RR G GLGL+I + + Sbjct: 481 GERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMM 540 Query: 769 GGHVSI-SSSDEGVT 782 GG + + SS EG T Sbjct: 541 GGEIGLKSSPKEGST 555 >gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 501 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 E A +EA +A+E K+ F+ +S+ELR+PL I+GF++++ LG + N Sbjct: 242 EMAKIMSDEARSRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGNESYK 301 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+ I AS LL L+N+ILDL+ V+AG L+ + + + + + K ++ Sbjct: 302 DYIADIHASGQHLLGLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAEAKDL 361 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I + L + AD + L QI +LSNA+ F+ +G + L+ G +VK+N Sbjct: 362 VIGAEFEADLPAMWADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLAVKDN 421 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IPE+ V + F S A + +G GLGL IV++ + +H G + S Sbjct: 422 GPGIPEEEIPIVLSSFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRS 473 >gi|47527271|ref|YP_018620.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184845|ref|YP_028097.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49477455|ref|YP_036139.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036949|ref|ZP_03104328.1| sensor histidine kinase [Bacillus cereus W] gi|254684570|ref|ZP_05148430.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254721328|ref|ZP_05183118.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254741274|ref|ZP_05198962.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254750825|ref|ZP_05202864.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|47502419|gb|AAT31095.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178772|gb|AAT54148.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49329011|gb|AAT59657.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990438|gb|EDX54427.1| sensor histidine kinase [Bacillus cereus W] Length = 453 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|170756067|ref|YP_001783182.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] gi|169121279|gb|ACA45115.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 469 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + KQ+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KLN I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 617 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 36/310 (11%) Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 C + + + W L +A + SF R L G +VT Sbjct: 322 CLKRRDGAVIWALVSAAVVSFHGRRALLIG-------------------------IQDVT 356 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605 + AL E + A K+ F+ ++S+ELR+PL IIGF++ L+ G + N + Sbjct: 357 VRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAIIGFSEALERELFGPVGNPR 416 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +Y E I S LL+L+NDILDL+ ++AG KL+ L+ ++ + + + + Sbjct: 417 YREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETDLDHIVAAATRIVRHRAQQA 476 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 NI I+ + + D + L Q+ ++SNA+ FS GS ++++A SV + Sbjct: 477 NIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGSLILVEANVTTQGLRISVAD 536 Query: 726 NGSSI-PEDMCKSV--FNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 G I PED+ +++ F + +S AH G GLGL + + LH G + I S+ + Sbjct: 537 KGVGIAPEDIPRALTPFTQLDGSLSRAH----EGTGLGLPLAKHLTELHDGKLFIESAVD 592 Query: 780 GVTTINCRIP 789 TT+ +P Sbjct: 593 VGTTVYVDLP 602 >gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 866 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 6/237 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D +R E L + + A+ K+ F+ +S+ELR+PL ++G DLL + L+ Sbjct: 474 DISDQIRHESDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTP---LD 530 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +Y I+ S+ LL ++NDILDL+ ++AG + L LL V+ + Sbjct: 531 AEQRRYTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPFDPATLLEGVRTLMEGPAR 590 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + I ++ I K + D RL QI + +N + F+ KGS + A G F Sbjct: 591 DKAIALRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEKGSLTLRLKAGTGGALRFE 650 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V++ G IP++ ++F+ F + RR G GLGLSI + L GG + S+ Sbjct: 651 VEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGGRLGFDST 707 >gi|331083608|ref|ZP_08332719.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403819|gb|EGG83371.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium 6_1_63FAA] Length = 515 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 134/245 (54%), Gaps = 10/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA AL KNE LR + ++ +S++LR+PLT+I G +L ++ KQ Q Sbjct: 274 RAAAALMAKNEQLRA------NLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQL 327 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S L+NLV ++L + ++ G MKL + +L +++ E + + ++ +R+ Sbjct: 328 YEDIYEDSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRV 387 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ + L AD + ++Q+ ++ NA+ ++ KGS ++++ ++ + + SV +NGS Sbjct: 388 QLSEN--LILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSG 445 Query: 730 IPEDMCKSVFNRFVS-NAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I +++ + +F F + N+H RR +GLGL++ +S ++ HGG + + Sbjct: 446 ISDEVKEYIFEMFYTGNSHAADSRRSLGLGLALCKSILHAHGGDIFVEDCQPHGARFIFT 505 Query: 788 IPSKE 792 +P+KE Sbjct: 506 LPAKE 510 >gi|165870245|ref|ZP_02214901.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167633043|ref|ZP_02391369.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167638329|ref|ZP_02396606.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170686406|ref|ZP_02877627.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170706128|ref|ZP_02896590.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177650820|ref|ZP_02933717.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190566443|ref|ZP_03019361.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|218903127|ref|YP_002450961.1| sensor histidine kinase [Bacillus cereus AH820] gi|227815204|ref|YP_002815213.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229599899|ref|YP_002866374.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254734874|ref|ZP_05192586.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|164714133|gb|EDR19654.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167513630|gb|EDR88999.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167531855|gb|EDR94520.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170129130|gb|EDS97995.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170669482|gb|EDT20224.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172083281|gb|EDT68342.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190562578|gb|EDV16545.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|218537300|gb|ACK89698.1| sensor histidine kinase [Bacillus cereus AH820] gi|227005627|gb|ACP15370.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229264307|gb|ACQ45944.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 459 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 227 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 285 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 286 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 344 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 345 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 401 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 402 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 458 >gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1137 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + L + E R AD K+ F+ VS+ELR+PL +IGF++LL+ + + Sbjct: 734 DITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEP-- 791 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y+ I+ + LLNL+ND+LDL+ ++A ++L+ + + L+ E+ K Sbjct: 792 QEQQEYLGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAV 851 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD 718 E N+ +++ + D R+ QI + NA+ F+ G + L G Sbjct: 852 EKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGGVTVSAVFRLAEEAGQGT 911 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR--RGVGLGLSIVESFINLHGGHVSIS 775 IFS+ + G I + +F FV ++ RG R G GLGL+I + + GG +S Sbjct: 912 LIFSITDTGIGILPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAE 971 Query: 776 SSDEGVTTINCRI 788 S+ +T R+ Sbjct: 972 STPGKGSTFTVRL 984 >gi|301053530|ref|YP_003791741.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375699|gb|ADK04603.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 453 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 374 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A A+ K F+ VS+E+R+PL IIGF+D++ + G + Sbjct: 117 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 176 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Y+EY I S +L++VND+LD++ ++AG M L+++ + LN+ ++E + Sbjct: 177 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 234 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719 + + + I+ + VAD + + QI ILSNA+ F+ G +++ + + NG Sbjct: 235 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 294 Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G + D F + S R + G GLGL + ++ ++ + SI+S Sbjct: 295 VLRVRDTGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINS 354 Query: 777 SDEGVTTINCRIPSK 791 + T + PS+ Sbjct: 355 APNEGTLVEITFPSQ 369 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 39/276 (14%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L E N+ L A +K+ F+ ++S+ELR+PL I+G T+ L GS+N++Q + ++ Sbjct: 1554 QQLAESNQKLAHATRLKDEFLANMSHELRTPLNAILGMTEGLTDVIFGSINTQQKKALQT 1613 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ LL L+NDILD+A +++G ++LN + + L I + NI ++V Sbjct: 1614 IDRSAHHLLELINDILDVAKIESGQIELNCAATSVLLLCQSSLSFIKQQALRKNIHLEVQ 1673 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----------------- 715 + D +R+ Q+ +L+NA+ F+ +G +V L R Sbjct: 1674 IPPHVPDVWVDERRIRQVLINLLNNAVKFTPEGGSVTLSVQRQLIVQDPPPLQGITKVRV 1733 Query: 716 --------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753 + +V + G IP +F FV +A Q G Sbjct: 1734 HRTPIEQQLGIQLQTSQFEVHNYLRIAVTDTGIGIPSHYLHKLFQPFVQIDSALNRQYTG 1793 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL++V+ + LHGG V ++S++ + +P Sbjct: 1794 TGLGLALVKRIVELHGGEVGVTSTEGAGSCFTIDLP 1829 >gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM 17393] Length = 628 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R ++ L + E ++D +K++F+ ++S+E+R+PL I+GF+ +L + + + Sbjct: 388 SQRHKKELIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---TDTPENH 444 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I ++ +LL L+NDILDL+ ++AG++ Y+ + +N + +++ + +M N Sbjct: 445 EYIRIIEDNNYLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPAN-- 502 Query: 668 RIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +K +++ + ++ RL+Q+ SNA+ ++++GS I N F V++ Sbjct: 503 -VKCVTEFSMKKCYIHTEKNRLMQVLGNYFSNAIKYTNQGSITIGYYPPKNEKIRFYVRD 561 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I D +++F RFV + Q G GLGLSI + V I S Sbjct: 562 TGCGISPDKQQTIFQRFVKLDNFKQ--GTGLGLSICQMIAEKMNATVGIHS 610 >gi|291453163|ref|ZP_06592553.1| histidine kinase [Streptomyces albus J1074] gi|291356112|gb|EFE83014.1| histidine kinase [Streptomyces albus J1074] Length = 797 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K+ LR A K F +VS+ELR+P+ +I LL + L +Q Q V I+ Sbjct: 398 LEDKSRRLRLASAAKTRFWANVSHELRTPVNAVIALAQLLLDAGAEPLTDEQHQQVSLIA 457 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL LV ++LD A ++G ++ L +L++++ ++A+ E ++ +++ Sbjct: 458 GSGNTLLALVEELLDTAKAESGRLEPQLVEADLRTVLHQLRGTLASTTAE-DVTLEIADT 516 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731 G FV D L +I +LSN++ F+++GS + A D +F+V + G IP Sbjct: 517 AFPGPFVTDEVMLTRILRNVLSNSLKFTTEGSVRLTVADERRADGPWAVFTVTDTGVGIP 576 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ED + VF F V H+ G GLGL L GG ++++S Sbjct: 577 EDEIEQVFEEFYQVRGVHQRHVSGTGLGLPYARKLTELLGGRLTLTS 623 >gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 594 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A + A R+A+E K+ F+ +S+ELR+PL I+GF++++K G+ + S Sbjct: 273 EQARVNSDLARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKGELFGAHVISSYK 332 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I AS LL L+N+ILDL+ ++AG ++L + L ++++ + +A K + + Sbjct: 333 DYSNDIHASGQHLLTLINEILDLSRIEAGHLELRDDCVALAHVVDDCRHLLALKAKKRGL 392 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I+ + L AD + L Q+ +L+NA+ F+ G + +K NG S+ ++ Sbjct: 393 TIEEHVEPDLPRLRADERALRQVALNLLTNAVKFTPPGGWIKIKIGWTANGGQYVSIHDS 452 Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783 G IPE+ V + F A + G GLGL IV+ ++LH G S+ S EG Sbjct: 453 GPGIPEEEMPIVMSSFGRGTLAQKNALEGSGLGLPIVKGLVDLHNGTFSLKSRLHEGTEA 512 Query: 784 I 784 I Sbjct: 513 I 513 >gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 1172 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667 E I ++ LLNL+NDILD++ V+AG +++ N S L + L + Q +A E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 592 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 V I G DRQRL QI +LSNA+ F+ GS ++ + + F V+++ Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDS 652 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 653 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1629 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 12/244 (4%) Query: 538 TMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 TML V N+ ++ +TE+ +K + IKN F+ VS+ELR+PLT I L+K Sbjct: 1374 TMLQDVDENIIGTISIGEDITER----QKLEHIKNEFIGIVSHELRTPLTGIQMSLGLIK 1429 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T K + +E + L+NLVNDILDL +D+G L + DL+ + Sbjct: 1430 TGVYDRKPEKARRMIEIALLDTHRLVNLVNDILDLERIDSGRAVLEKTVCKAADLIQQAV 1489 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I + I + +I+ + + A ++Q + +L NA+ FS ST+ L +A + Sbjct: 1490 DGIQAIATQQQISL-IITPTDVKVWAAP-DTIIQTLTNLLGNALKFSPPHSTIHL-SAEN 1546 Query: 716 NGDF-IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 DF +F V++ G IP D + +F RF V + ++ G GLGLSI +S I HGG + Sbjct: 1547 QADFALFQVRDRGRGIPADKLELIFGRFQQVDASDSREKGGTGLGLSICQSIIERHGGKI 1606 Query: 773 SISS 776 + S Sbjct: 1607 WVES 1610 >gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 985 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 + +I+P+ A + + ++T S + ER L E A AD K+ F+ ++S+E+ Sbjct: 560 FDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAKLAAEHADRAKSEFLANMSHEI 619 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ IIG DLL ++ L + Q VE I +S+ LL ++NDILDL+ ++AG + Sbjct: 620 RTPMNGIIGMADLLAEAE---LTADDQQNVETIRSSAQALLKIINDILDLSRLEAGKFAI 676 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699 + L D + K E + ++V ++G D RL QI ++ NA+ Sbjct: 677 SREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDGRLRQILVNLIGNAV 736 Query: 700 DFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 F+ G + +A D + V+++G I E K +F+RF A G G Sbjct: 737 KFTPDGKIAVRVSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTG 796 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I GG +++ S Sbjct: 797 LGLTISSMLAKRMGGGITVQS 817 >gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9] Length = 927 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L+S Q Y+ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L + L+EV + +A HE + + + D ++ Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ +G+ +V LKA++D + F+V++ G I E Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 501 >gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 761 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E ++D +K++F+ ++S+E+R+PL I+GF++L+ S+ Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M + LN L+NE+ + M Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631 Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E +R++V ++ VA D RL Q+ S ++NA+ F++ G + GD + Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K VF+RF Q G GLGL+I + GG + + S Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743 >gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 919 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLSTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + +I Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLVQDTLTILAPAAHAKQLELLSLIYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI- 730 S V D RL QI + ++SNA+ F+ +G T++++A +DN SV++ G + Sbjct: 392 PSSLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEQQDNAQLRISVQDTGIGLS 450 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P+D+ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDV-RTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580] gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580] Length = 593 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 166/355 (46%), Gaps = 38/355 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N + G + + + Sbjct: 260 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNVKEGHEL------------PPEARE 307 Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 LF +++ ++ +LQG +L S PL N +V +V R +T Sbjct: 308 LFQNTVSTEKEQMIEMTLQGRTWVLLMS-------PLYNQS------HVRGAVAVLRDMT 354 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ R+ D+++ F+ +VS+ELR+P++ + G+++ + + S ++ + + I Sbjct: 355 EE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEEKKEIAQVIYDE 409 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S + LVND+LDLA ++AG + LN + L + V + + NI + D Sbjct: 410 SLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDLH 469 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 FV D ++ Q+ + ++ NA+ ++ G TV + +VK++GS IPE+ Sbjct: 470 EAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESGLKIAVKDSGSGIPEEDLP 529 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF A + G GLGL+IV++ ++ H G +++ S T+ IP Sbjct: 530 FIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIP 584 >gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 1001 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 17/262 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F ++TD E+ + E +AD+ K F+ +S+ELR+P+ IIG +LLKT++ Sbjct: 740 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTE 795 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ Q Y + + SS LL+++N+ILD + ++ G M LN I + LL + Sbjct: 796 ---LDEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLF 852 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716 + K E + + I+ + D RL Q+ ++SNA+ F+++GS ++ ++ Sbjct: 853 SAKAKEKGLLLSCSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRT 912 Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769 G F VK+ G IP + +F F S H R G GLGL+I + + L G Sbjct: 913 GTQEFTLAFQVKDTGIGIPAEQQHQLFMSF-SQLHPSLNRKYGGTGLGLAISKKLVELMG 971 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G + + S ++ ++ IP++ Sbjct: 972 GVIGVESREQLGSSFYFTIPTR 993 >gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC 43184] Length = 798 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 137/241 (56%), Gaps = 15/241 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 L + V + + ++ E + D +K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 555 LEMICVNYDITELKETQKQREKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDT-- 612 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ Q+VE I ++ +LL L++D+LDLA +++GI++L + L +L E+ S+ Sbjct: 613 -DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMR 671 Query: 660 TKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 K+ + + V+ D L S++ D+ RL QI S ++NA+ +SKG T++L Sbjct: 672 IKV-PAEVALCVVPD--LPSYIMRCDKVRLTQIISNFINNAIKHTSKG-TILLGYEIRWD 727 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSIS 775 + FSV + G + ++ + VF+RF ++G ++G GLGLSI +S I GG + + Sbjct: 728 EIEFSVTDTGDGMSPEVQRHVFDRF----YKGNSFKQGTGLGLSICKSIIEQVGGKIGVE 783 Query: 776 S 776 S Sbjct: 784 S 784 >gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] Length = 998 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 19/257 (7%) Query: 546 TDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 TD +R E+ ++ E +A++ K++F+ ++S+ELR+P+ IIG++++L + Sbjct: 482 TDVIRREKDKQTVSVLKEEAEQANKAKSAFLANMSHELRTPMNAIIGYSEIL------TE 535 Query: 603 NSKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ +Q+ EYI I LL L+NDILD++ ++AG M+L+ I L EV Sbjct: 536 DATDNQHQEYIPDLKKINSAGKHLLQLINDILDISKIEAGKMELDIQDINFTSLAQEVAD 595 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715 + + +N +K+I D + D ++ QI ++SNA F+ G+ T+ K +D Sbjct: 596 TSDALVTKNGNTLKIIKDESIQGITGDSVKIKQILFNLISNAAKFTENGTITLGYKTYQD 655 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + +F+ V++ G I +D VF F R+ G GLGLS+V+ F L GG + Sbjct: 656 DNNFLSIYVQDTGIGIEKDKAAKVFEEFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSI 715 Query: 773 SISSSDEGVTTINCRIP 789 + S +T IP Sbjct: 716 KLESEIGKGSTFTVTIP 732 >gi|228945617|ref|ZP_04107967.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814135|gb|EEM60406.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 444 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443 >gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1336 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D++K++F+ ++S+E+R+PL I+GF+ L+ S+ Sbjct: 910 DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 966 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + E + A++ LL L+N+ILDL+ +++GI++ + I +N L EV + + Sbjct: 967 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 1026 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +++I + V D+ R+ Q+FS ++ NA F+ GS N +F Sbjct: 1027 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 1082 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G+ I + VF RF + Q G GLGLSI ++ + GG +S+SS Sbjct: 1083 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 1140 Query: 782 TTINCRIP 789 TT +P Sbjct: 1141 TTFTFTLP 1148 >gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 643 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ +AE AL +A K+ F+ +S+ELR+PLT I+GF LL +L Sbjct: 391 DVTERRQAEEALGHARAEAERASRAKSDFLSRMSHELRTPLTAILGFNQLLGMDGE-TLT 449 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V+ IS + LL ++ ++LD+A ++AG L + LL +V+ IA + Sbjct: 450 DDQRHGVDQISRAGGHLLAMIEEVLDIARIEAGGHALAPVPLDPAPLLADVRDLIAPQAQ 509 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + +++ D L S +ADR+ +QI +LSNA+ + G V + +G V Sbjct: 510 AAGVEVRIEGDAGL-SVLADRRATVQIVLNLLSNAIKYGPAGGVVTVTLVGASGRVRIEV 568 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHR-GQRRGVGLGLSIVESFINLHGGHVS 773 ++ G +P ++ +F F +A R +G GLGL++ GG VS Sbjct: 569 RDEGPGVPPELVDRLFIPFDRLDAERWSGAQGSGLGLALSRGLARAQGGEVS 620 >gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 850 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA ++A E++++ + VS++LR+PL+ I+ ++ + ++ ++ I S+ Sbjct: 617 EAAQRAIELRDNVLATVSHDLRNPLSAILTAAAVMTKRAVTRGEKGDTKAIQAIQRSAHR 676 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L++D+LD A++ AG + L ++ E ++ ++ E I++ V++ + Sbjct: 677 MDRLIHDLLDFASLRAGRLALRRQPQDPREIGREAVETFESQAQEKGIQLGVVAADDVPL 736 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 DR R+LQ+ + +LSNA+ + + L+ R +FSV + G IPE+ +F Sbjct: 737 VTCDRDRVLQVLTNLLSNALQVTGAQGAITLRCERGEEHVVFSVADTGPGIPENELPHLF 796 Query: 740 NRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF RG+R +G GLGL+I + HGG + + S TT IP Sbjct: 797 ERF----WRGERNGYKGTGLGLAIARELVAAHGGTIDVESRVGVGTTFRFTIP 845 >gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 778 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ ++ K E I + Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725 V IS V D RL Q+ +SNA+ F+ +GS + L++ FSV++ Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F R+ G GLGL+I + L GG + + S Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606 >gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13] gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 1036 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 173/385 (44%), Gaps = 56/385 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D ++GV + P+GRI+ N + +L+ E + E++G Sbjct: 668 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 705 Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538 F +++ + + +R ++ G L +L+D L +I LP+ + Sbjct: 706 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 765 Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++T R E LT + + K F+ +S+E+R+PL IIGF++L+ Sbjct: 766 FCAVLRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADE 825 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K G + N + Y+ I+ S +L LVND+LD++ ++AG + + + + LND + E Sbjct: 826 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 885 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + + + + I+ L VAD + + Q+ +LSNA+ F++ G VI+ + + Sbjct: 886 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 945 Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 NGD + V++ G + P ++ R +A + G GLGL + ++ + Sbjct: 946 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1005 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 + +I S+ T + P Sbjct: 1006 EANRAQFAIDSNPGQGTVVEIVFPP 1030 >gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1053 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 149/264 (56%), Gaps = 13/264 (4%) Query: 523 DSVLEYSII-PLPNAQTMLT-FVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHV 576 D +E ++I P+ N + +T FV V + + ++ L E ++D +K +F+ ++ Sbjct: 632 DIYIESAVISPIFNKEGSITNFVAVKEDITEKKKLWSELIAAKEKAEESDRLKTAFLANI 691 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+P+ I+GF++LLK L +Q++Y+ I+ S +L+L+N+++D++ +++G Sbjct: 692 SHEIRTPMNGILGFSELLKEPHLSG--EEQTEYINLINQSGQRMLHLINELVDISRIESG 749 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFV-ADRQRLLQIFSKI 694 L + +N L++++ + + + + ++ L S + D ++ QI + + Sbjct: 750 DTFLQITETSINRLMHDIYAFFRPEAAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNL 809 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752 + NA+ F+++GS V + N F V ++G+ IP +M + +F+RF V N+ + Sbjct: 810 VQNALKFTTEGS-VDFRYTLKNDCLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYE 868 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGLSI +++I + GG + + S Sbjct: 869 GAGLGLSISKAYIEMLGGKIWVES 892 >gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 927 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 18/249 (7%) Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 N Q L VN +T+ E L E E AD +K++F+ ++S+E+R+PL I+GF+ Sbjct: 675 NGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSS 734 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ + G + K+ QY+ I ++ +LL L++DILDL+ ++AG + +N L Sbjct: 735 LM--GETGDMEEKR-QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCE 791 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++ + + K ++V+ D L V+DR RL Q+ + ++NA+ F++ GS + Sbjct: 792 DIVRFMKMKAKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVG 848 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINL 767 D F V + G I +M +F+RF+ + H G GLGLSI +S I Sbjct: 849 YNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH-----GTGLGLSISKSIIEQ 903 Query: 768 HGGHVSISS 776 GG + + S Sbjct: 904 LGGTIGVDS 912 >gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 11/250 (4%) Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N L FV + T R E +L + A + K+ F+ +S+ELR+PL +IG T+L Sbjct: 681 NTDLCLCFVLDATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTEL 740 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + L+++Q+Q+V +S LL L+ND+LD + ++AG ++L+ L LL++ Sbjct: 741 LANT---DLDARQTQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDD 797 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 + + ++ +I++ D + D RL Q+ ++ NA+ F+ +G + Sbjct: 798 LMNVMGLRVSGKDIQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTERGKISLRVE 857 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 L+ D F+VK+ G IP D +F F R G GLGL I +S + Sbjct: 858 PLELTEDRAKLRFAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVE 917 Query: 767 LHGGHVSISS 776 GG + + S Sbjct: 918 AMGGEMGVDS 927 >gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010] gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010] Length = 896 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 4/240 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L K EA R A+ K+ F+ +S+ELR+PL I+GF+ L+ + +LN KQ + Sbjct: 505 EALLKAKYEAER-ANNAKSEFLSSMSHELRTPLNGILGFSQLILSDTEHTLNEKQRHNIN 563 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+L+ND+L+L+ +D+G +K + + + + E + + + NI I Sbjct: 564 QIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEECQPLLQALAKQQNINID- 622 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729 DG +AD +L Q+F ++SNA+ ++ G V++ A+ N ++ + G Sbjct: 623 FQDGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSASVQTHNNSLKLTITDTGKG 682 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I +D VF F G G+GLS+ + I GG + +S++ T+ +P Sbjct: 683 ISKDRQAQVFTAFERLGQERHVEGAGIGLSVSKRLIEAMGGQIDFASTEGQGTSFWIELP 742 >gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 903 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L+S Q Y+ I S+ LL Sbjct: 260 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 315 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L + L+EV + +A HE + + + D ++ Sbjct: 316 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 375 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ +G+ +V LKA++D + F+V++ G I E Sbjct: 376 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQA 435 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S++S Sbjct: 436 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 477 >gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1046 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + L A K+ F+ ++S+ELR+PL + + LL +K +L ++Q +Y Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S+ LL L+NDILDL+ ++AG ++L+ T+ ++ ++ ++ + + ++++ Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467 Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + +D + V D QRL QI +L+NA+ F+ G + + NG F V + G Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + + +F F +RR G GLGLSI GG +S+ S Sbjct: 528 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDS 576 >gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 917 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613 L NE L++ D +K+ FV VS+ELR+PLT+I F ++L ++ L+++Q ++++ + Sbjct: 666 LRRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNP--ELDAEQRKEFLQVV 723 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L L+N +LDL+ +++G + + T+ LN ++ E + H+ + ++V + Sbjct: 724 VKESERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQVKA 783 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGS 728 + D RL+Q+ +LSNA F+ + +V+ +AR V++NG Sbjct: 784 PEQPTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSAR---KLELRVQDNGP 840 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I E + +F++F VS+ G+ +G GLGL+I + ++ H G + + S T C Sbjct: 841 GISEAEQRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFIC 900 Query: 787 RIP 789 P Sbjct: 901 EFP 903 >gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8] gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8] Length = 1987 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 143/281 (50%), Gaps = 17/281 (6%) Query: 526 LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 L ++PL NA+ ++ ++T+ VR ER L +A +A+ +K+S + ++S+E+R+ Sbjct: 1696 LRVHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKSSLLANMSHEIRT 1755 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQ--------SQYVEYISASSTILLNLVNDILDLATVD 634 PLT+I+GF ++++ + GSL ++ I S L++ + +L+L+ ++ Sbjct: 1756 PLTSILGFAEMIE-EETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLE 1814 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AG M L + L++ EV + + +R++V + G+ AD + + + Sbjct: 1815 AGEMDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQADGGGMQIVLRNL 1874 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 +SNA+ ++ G + L+ R+NG + V+++G + + + +F F A G R Sbjct: 1875 VSNAIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPF-RQASEGMAREY 1932 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGL++ + G + + + TTI ++P +E Sbjct: 1933 EGTGLGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEE 1973 >gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1077 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 16/259 (6%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSYELRSP 583 + Q + V +RA++ L + E L +A+ +K+ F+ VS+ELR+P Sbjct: 652 DTQRQMGIATVGRDIRAQKRLEAERERLLARERVAREEAEEANRLKDEFLATVSHELRTP 711 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 LT ++G+ +L+T L K+ + + + ++ LV D+LD++ + G +KL+ S Sbjct: 712 LTAVLGWVQMLRTGTLPP--EKRERALATVERNARAQGQLVEDLLDVSRIMTGKLKLDVS 769 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++ ++ ++ V +S+ IRI+ D G+ + D RL Q+ +LSNA+ F+ Sbjct: 770 SVDVSQVVEAVLESLRPAAEAKGIRIQAALDSG-GTIMGDVSRLQQVVWNLLSNAVKFTP 828 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 KG V + R N +V + G I VF RF R+ G+GLGL+IV Sbjct: 829 KGGRVQVLVERRNSSVEITVADTGQGISPQFLPHVFERFRQADGSTTRKAGGLGLGLAIV 888 Query: 762 ESFINLHGGHVSISSSDEG 780 + LHGG V +S EG Sbjct: 889 RHLVELHGGTVMATSEGEG 907 >gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 598 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 175/355 (49%), Gaps = 30/355 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFR---SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV GRI L+NP +L EE + + + + + L Sbjct: 264 MADGVITLDRQGRILLTNPQAEEVLALLFYEEGQKPITGERKTLPVSLT---------PL 314 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++++ +E + L +++ S +VL + PL + +V +V R +TE+ Sbjct: 315 FEQVVSAEKEELQEL--SVQGRSMAVL---MAPLYAEE------HVRGAVAVVRDVTEE- 362 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + ++ + + I S Sbjct: 363 ---RRHDKLRKDFIANVSHELRTPISMLQGYSEAM-VDGVTSSDEERKEVAQIIYDESLR 418 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVN++LDLA ++AG + LN + L+ L + + A+ E ++ +++ G+ Sbjct: 419 MGRLVNELLDLARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRGQI 478 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 V D R+ Q+ + ++ NA+ ++ G + + ++ F+V + G IPE+ VF Sbjct: 479 AVFDPDRIEQVLTNLIHNAIRHTNPGGLITVVHEQEEERDTFAVVDTGRGIPEEDLPYVF 538 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF A Q G GLGL+I + I+ H G +++ S TT + +P ++ Sbjct: 539 ERFYKADKARTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLPKQQ 593 >gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] Length = 697 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 3/218 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ K+ F+ +S+ELR+PL +I+GF+ L++ + L +Q + VE+I S LL L Sbjct: 308 RANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLPERQQRQVEHIERSGQHLLAL 367 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVA 682 +NDILDL+ ++AG M ++ L E I + E I++ + L + A Sbjct: 368 INDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPALPAVQA 427 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ ++SNA+ ++ KG + G F V++ G IPED +F Sbjct: 428 DHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRMEFRVRDTGLGIPEDRRAELFRP 487 Query: 742 FVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F H G +G G+GL I + GG + S + Sbjct: 488 FSRLGHETGAIQGSGIGLVISRELVRHMGGELEYQSRE 525 >gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 653 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 9/220 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTILLN 622 A+ +K+ + VS+ELR+PL I G+ ++L+ S++ + Q V+ I S+ L Sbjct: 273 ANRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQAVDAIDRSARSLAR 327 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V D+LD +++ G ++L + + + ++++ + H I + G A Sbjct: 328 MVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISA 387 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +RL Q+ S +LSNA+ F+ G +++ AR + SV + G + + +F+ F Sbjct: 388 DAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQGMAPEALPHLFDPF 447 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +NA +RG+GLGLSIV + LHGG V +S G Sbjct: 448 NRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPG 487 >gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 640 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+AL E + +A ++K+ F+ V +E+R+PL I+G LL + L+ +Q + Sbjct: 140 AEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDTP---LDQRQKVFA 196 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + +S +LL LVNDILD + ++A + L ++ L +++ +++ +A + + + + Sbjct: 197 ETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADKGLTLG 256 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 ++ V+ D RL Q+ ++ NA+ F++ GS +I A + + FSV + G Sbjct: 257 CRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSVSDTGI 316 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPE+ +FN F RR G GLGL+I + + L GG + S+ T Sbjct: 317 GIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSGTQFWF 376 Query: 787 RIP 789 RIP Sbjct: 377 RIP 379 >gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1824 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1346 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1405 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 1406 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1465 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716 V +S + D QRLLQ+ +LSNA+ F+ GS ++++ ARD+ Sbjct: 1466 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQKIREQLLET 1525 Query: 717 --------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 G FSV + G I + +F F R+ G GLGLSI Sbjct: 1526 GSLTDPDAGLIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1585 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1586 LLGGEIYAQSETGRGSTFTLYLP 1608 >gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] Length = 628 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 134/239 (56%), Gaps = 7/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E +A+++K++F+ ++S+E+R+PL I+GFT+LL+ K + + ++ + I+ Sbjct: 393 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKELT-DEEKDLFRNTIN 451 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +LL L+NDIL+L+ +++G M + LN+LL E+ Q+ M N +K + Sbjct: 452 KNSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPSNIRFLKEFQE 511 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732 +L V DR R Q+ + ++NA+ F++KG ++L A ++ + V++ G + E Sbjct: 512 TELIIHV-DRFRFTQVITNFINNAVKFTTKGH-ILLGAVYKKEEKEVHVFVEDTGKGMSE 569 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + K VF RF Q G GLGLSI ++ G +++SS + + IP + Sbjct: 570 EAQKKVFERFFKVDEFAQ--GTGLGLSICQTIAERLEGRITLSSQEGKGSRFTLIIPCR 626 >gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341] gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341] Length = 925 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|156741627|ref|YP_001431756.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232955|gb|ABU57738.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 391 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 18/318 (5%) Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535 PGT R +AA C + + L I F L G ELL S LE ++ N Sbjct: 90 PGTRERALAAGCDGFITKPIDPRLLPEQIAEF------LGGKRELLPTS-LETIMLREYN 142 Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ V R R L+ +N L++ D +KN+F+ +S+ELR+PLT I+G+ +L + Sbjct: 143 ARL------VERLERQVRELSARNAELQELDRLKNTFLATLSHELRTPLTAILGYLELFE 196 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 LGSLN Q Q + I+ ++ L ++N++L L V + ++ + +V++++L EV Sbjct: 197 RRTLGSLNDVQGQAINVIARNARTLSRILNNLLYLQEVRS--TEIRRAPVVIHEVLQEVI 254 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N+ + S ++ D + Q ++ NA+ F+ V + + Sbjct: 255 EDMQPLARAANVTLSA-SLQPTAVYMGDPIGISQALRALIDNAIKFTPPSGRVDVTLIDE 313 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + V++ G IP + + +F F + + G GLGL+I + HGGH++ Sbjct: 314 PSRVLVRVEDTGIGIPAEAQEKIFLPFYQIDDTLARPYSGAGLGLAIARHVVEAHGGHLT 373 Query: 774 ISSSDEGVTTINCRIPSK 791 + S + +T +P + Sbjct: 374 VRSVVQAGSTFTVVLPRE 391 >gi|319652279|ref|ZP_08006397.1| hypothetical protein HMPREF1013_03010 [Bacillus sp. 2_A_57_CT2] gi|317396102|gb|EFV76822.1| hypothetical protein HMPREF1013_03010 [Bacillus sp. 2_A_57_CT2] Length = 464 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 + + E L+ DE + SF+ +VS++ +SPL NI G+ +LL+T KL + + +YV+ I Sbjct: 226 SFSRMQEQLQHNDEARKSFINNVSHDFQSPLMNIQGYAELLQTQKLSA--EEHFEYVQII 283 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L NL +L L ++D + S + L+D + E + ++ E I + Sbjct: 284 DQESKRLSNLTKQLLLLTSLDQKSYPMKLSDVKLDDQIKETIRRHQWRLEEKEIEVSY-- 341 Query: 674 DGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 KL F D + L+ I+ +L+NA+ ++S G ++++ ++ K+ G+ I Sbjct: 342 --KLAPVIFKGDPELLVNIWDNLLTNAIKYNSHGGSILISLSQTESSIEVVFKDTGTGIS 399 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780 ED +F+RF ++ G GLGLSIV+ I LH G + ++S + +G Sbjct: 400 EDAISQIFDRFYRVDSARKKDGTGLGLSIVKQIIELHTGEIRAVSQAGKG 449 >gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1050 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 14/258 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++T+ E L +A A K++F+ ++S+E+R+PL I+G LL +S SL Sbjct: 630 ADITERKAMELELVGVRDAALAASVAKSAFLANMSHEIRTPLNGIMGMLQLLDSS---SL 686 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q YV S L L++DILD++ ++AG + L L ++ + + Sbjct: 687 TEEQKNYVRMADVSGRRLTALLSDILDISRIEAGKLLLTERAFDLEEMRTSIITLFSIPA 746 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717 E I + V ++ + D RL QI ++ NA+ F+++G +L + DNG Sbjct: 747 QEKGISLVVELAPDLPPRLIGDDLRLRQILFNLVGNAVKFTNEGFVQTQISLLSSQADNG 806 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 +FSV+++G I + + ++F FV R +G GLGL+IV + + GG ++I Sbjct: 807 CRLLFSVQDSGEGISDTLLPAIFEPFVQGEGSYVRYHQGAGLGLAIVGRLMRMMGGSLAI 866 Query: 775 SSSDEGVT---TINCRIP 789 SSD G T ++N RIP Sbjct: 867 DSSDSGTTICFSLNFRIP 884 >gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida LFI1238] gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida LFI1238] Length = 929 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKTS L+ Q Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSDNQKDYLQTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 ++NDILD + ++AG + L D L+EV +A HE + I + D ++ S Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDPRIPSGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ N++ F+ KG+ I ++ N DFI F V++ G I E Sbjct: 400 IGDPLRIQQVLNNLVGNSIKFTEKGNIDISIELKHLNDDFIDVQFVVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG + +SS Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEIGLSS 501 >gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 948 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E E K+ F+ +S+E+R+P+ ++G LL ++L + Q ++E Sbjct: 402 ALDEAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTEL---DQDQQHHLEIA 458 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 S+ LL L+NDILD + +++G + L L+ L+E+ Q +A + E ++ + + I Sbjct: 459 QGSAKSLLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDI 518 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729 S K + D R+ Q+ + ++ NA+ F+ KGS ++ L A +N FS+++ G Sbjct: 519 SQIKPANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKLTAKNNNHRLTFSIQDTGIG 578 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + +D +++F F N+ G GLGLSI + +L G +S++S + Sbjct: 579 MKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISVTSKE 629 >gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 175/385 (45%), Gaps = 40/385 (10%) Query: 425 LETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481 LE +Y + Q E +D SE +A+ PDG N F ++ T + + G + Sbjct: 650 LEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQ-ALGHRLS 708 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDD----------ERKSLQGTLELLSDSVLEYSII 531 ++ A ++++D +L+ + + D +RK Q L + S V + Sbjct: 709 DMRAAIRWIFDDAD--ELYVRMCHALQDTQTIFRERVSQRKPQQRELAIFSSPVWTAN-- 764 Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 QT L + V V ERA+ + +K+ FV VS+ELR+PLT+I G+ Sbjct: 765 -----QTHLGRLFVFRDVTHERAV----------ERMKSEFVAMVSHELRTPLTSIKGYV 809 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 D+L G L + + + + +++ LL L+ND+LD++ ++AG + L+ + L L+ Sbjct: 810 DMLLDGDAGPLADEHQELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHRIPLDLRPLI 869 Query: 652 NEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 +V ++ + R+ + DG D R QI + +LSNA+ ++ Sbjct: 870 RQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSNAIKYTPPNG 929 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 + ++ + +V++ G + + +F+RF +R R G GLGL+I S Sbjct: 930 EMTIRLTAEPPWLCITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTGLGLAITRSL 989 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + LH G +++ S +T +P Sbjct: 990 VELHDGRITVESQPGKGSTFRVYVP 1014 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 12/231 (5%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ +S+E+R+P+ I+G LL + SL+++Q +V+ I S +LL+L+NDILD Sbjct: 825 SEFLATISHEIRTPINAIMGMAGLLLDT---SLDAQQRDWVQTIRYGSEVLLSLINDILD 881 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688 + +++ ++L + L L+ E+ +A + ++ + D L + V D RL Sbjct: 882 FSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLR 941 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRF 742 QI + +LSNA+ F+ +G V+ A++ F V++ G IP + +F F Sbjct: 942 QILANLLSNAIKFTPQGEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRLFKPF 1001 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V ++ Q G GLGL+I + L GG + + S +T RIP K Sbjct: 1002 SQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPLK 1052 >gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 722 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 14/235 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE K EA+ A+++K+ F+ ++S+E+R+PL ++IGF+DLL+ KQ QY+ Sbjct: 232 AEDLKMAKEEAV-SANQLKSEFLANMSHEIRTPLNSVIGFSDLLEQE---VKEPKQVQYL 287 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I LL+L+N+ILDL+ +++G MK+ + L E+ + + + Sbjct: 288 HAIKNGGKALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVT 347 Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG--DFIFSVK 724 + L + +AD R+ QI ++SNA+ F+ KGS +V+ +++ G D IFS+K Sbjct: 348 YEIEKNLPEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIK 407 Query: 725 NNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I P++ K +F+ F+ N + R+ G GLGL+I L G ++I S Sbjct: 408 DTGIGISPKNQIK-IFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIES 461 >gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM 18315] gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM 18315] Length = 1131 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 12/235 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD + +N+A +A+ +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 888 DITDLKMTNELIRLRNKA-EEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA---MAEEP 943 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +YV+ I ++ +LL LVNDILDL+ ++AG M NYS + L+++ N ++Q +++ Sbjct: 944 DEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVK 1003 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + ++ + V +++ RL Q+ S LSNA ++S+GS + + R F Sbjct: 1004 DG---VDLVCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS-ITMGYERIGAILRF 1059 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G + E+ VF RF Q G GLGLSI ES I G + + S Sbjct: 1060 YVADTGKGLAEENIPHVFERFAKFDSFVQ--GTGLGLSICESIIQSLDGKIGVDS 1112 >gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184] gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184] Length = 1041 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 12/235 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD + +N+A +A+ +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 798 DITDLKMTNELIRLRNKA-EEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA---MAEEP 853 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +YV+ I ++ +LL LVNDILDL+ ++AG M NYS + L+++ N ++Q +++ Sbjct: 854 DEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVK 913 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + ++ + V +++ RL Q+ S LSNA ++S+GS + + R F Sbjct: 914 DG---VDLVCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS-ITMGYERIGAILRF 969 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G + E+ VF RF Q G GLGLSI ES I G + + S Sbjct: 970 YVADTGKGLAEENIPHVFERFAKFDSFVQ--GTGLGLSICESIIQSLDGKIGVDS 1022 >gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1369 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 21/257 (8%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L E E A K+ FV ++S+E+R+P+ +IG +LL + L Sbjct: 608 DITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PLT 664 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y I +S LL ++NDILD + ++AG + L ++ + EV +A + H Sbjct: 665 PEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAH 724 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------L 710 + I I G D RL Q+ + ++ NA+ F+ +G V+ Sbjct: 725 AKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEEKKKSA 784 Query: 711 KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 A G + F VK++G I E+ K +F F RR G GLGL+I + Sbjct: 785 PAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVE 844 Query: 767 LHGGHVSI-SSSDEGVT 782 + GG + + SS EG T Sbjct: 845 MMGGEIGLKSSPKEGST 861 >gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366] gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1196 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E L ++ + K+ F+ ++S+ELR+PL +I+ + L+ +K L+ + +Y E I +S Sbjct: 518 KAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK--ELDKEYIEYAEVIQSSG 575 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+++ILDL+ ++AG MKL ++ + + ++ +++ + N+ + + + + Sbjct: 576 QGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAKNKNLDLVIDVESDI 635 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 DR RL QI +LSNA+ F+S G + D G I F V + G IP D Sbjct: 636 SGINTDRMRLEQILKNLLSNAIKFTSTGKVALTVKQDDAGKAILFKVTDTGIGIPLDKQG 695 Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F A RR G GLGLSI L GG + ++S + + +P Sbjct: 696 LIFEAF-QQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTSKENVGSEFTLALP 750 >gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1022 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 9/228 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A+ K+ F+ ++S+ELR+P+ I+GFT L++ + SL ++ Y+E I+ Sbjct: 544 LQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLMQRDQ--SLPAQHQGYMEIIN 601 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ND+L+++ ++AG + L L+ LL ++ K +R++V D Sbjct: 602 HSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRRLESMFQLKAKSKGLRLRVQRD 661 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSI 730 + ++ D +L Q+ +LSNA+ F+ G + + G + F V + G I Sbjct: 662 DTVPQWIRTDEHKLRQVLINLLSNAIKFTENGQVTLEVSGVRQGKTVNLGFKVADTGPGI 721 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 ++ +F F GQ G GLGL I + F+ L GG ++I+S Sbjct: 722 AKEDRNELFQAF-KQTKLGQNTYEGTGLGLKISQKFVQLMGGEITITS 768 >gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides fragilis NCTC 9343] Length = 411 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 134/242 (55%), Gaps = 8/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q +LT ++T+ +R L + E A+++K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++++ Y++ ++ ++ LL +V D+LDL+ +++G + +YS +NDLL + Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHG 276 Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ ++ IK+I ++ +++ R++QI + ++ NAM F+ G + Sbjct: 277 ILNIRL-KDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQ 335 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F V + G IP +F+RF H + G GLGL++ ++ + GG + + Sbjct: 336 GEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNLGGEMGV 393 Query: 775 SS 776 S Sbjct: 394 ES 395 >gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1002 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 50/385 (12%) Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 NTL + QG +D+L++G+ V G+I NPAF ++ + L+ A T Sbjct: 405 NTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAM-----HGLT--------ATTL 451 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVT 546 + +Y E + L I + + + L D + Q + T + T Sbjct: 452 NGHYQELPIFGLADLIERTRSHPGEVFAADVALAKDRI----------GQAVGTAIFKRT 501 Query: 547 DSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS---- 597 D+ A L A ++ D++K F+ VS+ELR+PLT+++GF +++ Sbjct: 502 DTKEAAACFGSALLIRDVTAEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQTD 561 Query: 598 ----------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 KL + + I + + L +L+ND+LD+A ++AG ++ I Sbjct: 562 VFPVLSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPINP 621 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +LL+ S A N +++ + L + DR RLLQ+ ++SNA+ F+ GS Sbjct: 622 GELLDWAANSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS- 680 Query: 708 VILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 V + +D SV + G I PED K VF +F V + + +G GLGL I + Sbjct: 681 VTCRVKQDKDGVCISVIDTGVGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQI 739 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + HGG + + S + + +IP Sbjct: 740 VEHHGGRIWVESEPGHGSVFSFQIP 764 >gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 615 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 134/259 (51%), Gaps = 3/259 (1%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P+ + + +VTD + E AL + +AD ++ F+ VS+ELR+PL IIGF+++ Sbjct: 319 PDTEVVAVMRDVTDRKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEM 378 Query: 594 LKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + + +++ ++ +Y + I+ S LL++VN ILD++ +D+G ++ L Sbjct: 379 IVQEQALMISAERRREYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALL 438 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +A K ++ I + + L D + QI ++SNA+ F+ +G TV + A Sbjct: 439 NCCNLLALKARDSGIDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSA 498 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 A + V + G I D + + + F QRR G GLGLSIV++ + LHGG Sbjct: 499 AVEGAHLALRVVDTGVGIAADDLERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGG 558 Query: 771 HVSISSSDEGVTTINCRIP 789 ++++S + TT+ +P Sbjct: 559 ELTVASQLDKGTTVTAMLP 577 >gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262393930|ref|YP_003285784.1| putative sensor/response regulator hybrid [Vibrio sp. Ex25] gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25] Length = 566 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%) Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 E+ LRK +++ FV +++ELR+PL ++G +LL ++LG +Q Y+ Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQLGE---EQRHYLNN 245 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ S +L ++ND+LD + ++AG+M++ +L + + K E I + Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWEELEKAIMGVFSAKAAEKRIHFSI- 304 Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D KLG V D +R+ QI ++ NA+ F+ G V+L+ NG F V++ G Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWINGIAHFEVEDTGIG 362 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + S+F+ FV +R G GLGL+I ++ ++L G +S S + TT Sbjct: 363 IPIEAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422 Query: 788 IPSKE 792 IP KE Sbjct: 423 IPLKE 427 >gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] Length = 565 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 10/261 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFT 591 +Q +L + ++ + A+ E+ ++A+E + + FV +++ELR+PL ++G Sbjct: 168 QSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSA 227 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +L+ ++L +S Q + V +S S L ++ND+LD + ++AG+++L T L DL Sbjct: 228 ELISDTEL---SSSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLK 284 Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 N + + E I+ V ++DG F D +R+ Q+F ++ NA+ F+ +G V + Sbjct: 285 NTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQGH-VSV 343 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 + N FIFSV+++G I + K++F F + R G GLGL+I L Sbjct: 344 EIKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLAALM 403 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G + +SS TT +P Sbjct: 404 RGDIEVSSIVGSGTTFTISLP 424 >gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 966 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 18/236 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L E + AD+ K+ F+ +S+E+R+P+ IIG T L L+T L +KQ Y+ + Sbjct: 288 LAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTD----LTAKQQDYLTKV 343 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 SS LL ++NDILD + ++AG ++L L+D+LN++ ++ K E ++I+ I+ Sbjct: 344 QISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFIT 403 Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFI---FS 722 + S + D RL Q+ +++NA+ F+S+G V +K A G D I FS Sbjct: 404 ADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEFS 463 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 VK+ G + + +F F R+ G GLGL+I + +++ GG ++++S Sbjct: 464 VKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNS 519 >gi|117620577|ref|YP_856843.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561984|gb|ABK38932.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1307 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 7/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V E+AL +E +A K F+ VS+E+R+P+ I+G + L + SLN Sbjct: 737 DVTTRVEQEQALQASHERAEQAVLAKGRFLAAVSHEIRTPMNAILGLLEWLSHT---SLN 793 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q + ++ + LL L+ND+LD + + + L+ L DL V +K Sbjct: 794 AEQRSALAHVRQAGDELLGLLNDVLDFSRNENRQLALSLQPTDLVDLCEHVAAVHWSKAR 853 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++++ D +L + V D R+ Q+ +L+NA+ FSS+G V+L A R + Sbjct: 854 SKRLQLRLDLDHRLPAQVELDPHRVQQVLHNLLANAIKFSSRGE-VVLWARRAGSQLLCG 912 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I ++ +F F GQ R G GLGL+I + GG + + G Sbjct: 913 VDDEGPGISAELLPRLFLPFEQGGEAGQPRAQGTGLGLAICRQLMEQMGGEIRVEPRPTG 972 Query: 781 VTTINCRIP 789 + C +P Sbjct: 973 GSRFLCALP 981 >gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 929 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ RD+ + F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDMVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTS 502 >gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 927 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQADYLQTIEKSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 N++NDILD + ++AG + L + L EV AT HE + + + D K+ Sbjct: 340 NIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V L++ +++ + F V++ G I E Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1123 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 100/383 (26%), Positives = 177/383 (46%), Gaps = 44/383 (11%) Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIA 484 NTL + QG +D+L++G+ V G+I NPAF +++ L I +A Sbjct: 526 NTLAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKGHYRELPISGLA 585 Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 +R +S ++F+A + + ER + +V + PL + L + Sbjct: 586 ELVAR--TQSHPEEVFSAEV-ALTKERIGQAVATAIFKKTVEQE---PLACFGSALLIRD 639 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS------- 597 +T A ++ D++K F+ VS+ELR+PLT+++GF ++K Sbjct: 640 IT--------------AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIKEKLETDVFP 685 Query: 598 -------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 KL + + + I + + L +L+ND+LD+A ++AG ++ + ++L Sbjct: 686 IISTEDRKLQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPLDPSEL 745 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L+ S A N +++ + L V DR RLLQ+ ++SNA+ F+ G V Sbjct: 746 LDWATNSTAGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINLISNAVKFTESGC-VTC 804 Query: 711 KAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 + + + SV + G I PED K VF +F V + + +G GLGL I + I+ Sbjct: 805 RVKQGHDGVCISVIDTGIGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQIIDH 863 Query: 768 HGGHVSISSSDEGVTTINCRIPS 790 HGG + + S + + IP+ Sbjct: 864 HGGRIWVESEPGKGSVFSFIIPT 886 >gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 524 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 42/328 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG +++ + EYSI P A Sbjct: 196 FCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 255 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + AER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 256 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 315 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433 Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764 + K ++D + SV + G I E+ C+++F+RFV NA ++G GLGL+I ++ Sbjct: 434 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 488 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + + S+ +T +P KE Sbjct: 489 IEKLGGRIGVESTLGVGSTFWFTLPLKE 516 >gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 932 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ I R D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2] Length = 465 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 5/212 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 +N F+ +S+ELR+PLT I G+ D++ L + +Y+ I + L +L+ D+ Sbjct: 235 RNDFLASISHELRTPLTYIKGYADIVHKRNLSI--EDRDKYLNIIHEEANRLSDLIKDLF 292 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA +D + I L D + +++Q + E + + VI K +AD RL Sbjct: 293 DLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVIC-PKEAVIIADPTRLE 351 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI +L NA+ +S G+ IL D V++NG IPE+ + NRF V + Sbjct: 352 QIIFNLLDNAIKYSPPGAKTILSVNNKKKDVYIKVRDNGKGIPEEDLPYILNRFYRVDKS 411 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 G GLGL+IV+ + HGG VS+ S + Sbjct: 412 RTRSLGGTGLGLAIVKELVLAHGGTVSVRSKE 443 >gi|298675082|ref|YP_003726832.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288070|gb|ADI74036.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 677 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 15/276 (5%) Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQH 575 Y I+PL + + +++ ++T E L + + L+KA+ E+KN F+ + Sbjct: 400 YKIVPLGDEEGNVNESIIALDDITQRKETETQLLKYYDDLQKANRELKSLSEMKNRFISN 459 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VS+ELR+P+TNI G+++LL KLG LN KQS+ V IS S L L++ ++ + +++ Sbjct: 460 VSHELRTPITNIKGYSNLLNNKKLGELNDKQSKAVSVISQSCERLRWLIDTLIHINILES 519 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 + I L+ LLN V + + + + D L A+ + L Q+F IL Sbjct: 520 DNGIQHTQKISLSSLLNNVVSENSVYFFDKGLNLTTNIDSNLPLVDANPEYLEQVFVHIL 579 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 NA F+ G V + A D+G+ V +NG I E+ ++F+ F +RR G Sbjct: 580 DNACKFTPSGGKVDVHAF-DDGNLHIIVSDNGIGIDEESANNIFDLFYQKDDSSKRRYSG 638 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G G+ + I H G++ + S + T ++ +P Sbjct: 639 TGAGMYFCKKIIEKHHGNIWVESKIKEGTDVHIILP 674 >gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 621 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 10/255 (3%) Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +VL + P N ML ++T+ ER L E +AD +K++F+ ++S+E+R+ Sbjct: 360 NVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRT 419 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+GF+ LL+ + ++ Y I ++ +LL L++DILDL+ ++AG + Sbjct: 420 PLNAIVGFSSLLEEA---EDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIP 476 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L NE+ QS+ + E + I + + +F +D+ RL Q+ ++NA+ F+ Sbjct: 477 EQVDAQQLCNELLQSMQVRATE-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT 535 Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 S+GS VI R NG+ + FSV++ G I + +++F RFV G GLGL I Sbjct: 536 SEGSIVI--DYRINGNEVRFSVQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPIC 591 Query: 762 ESFINLHGGHVSISS 776 +S + GG + + S Sbjct: 592 QSIVTQLGGKIGVES 606 >gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 512 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 42/328 (12%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536 F I+ D ER +QG +++ + EYSI P A Sbjct: 184 FCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 243 Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586 + + +++TD + AER K L KA E +K+ F+ ++S+E+R+PL Sbjct: 244 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 303 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF ++L ++ YV+ I +S +LL L+ DILD + ++AG + Sbjct: 304 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 362 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ E A K+ + N+R + + +D +R++Q+ S L+NA+ F+S+G Sbjct: 363 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 421 Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764 + K ++D + SV + G I E+ C+++F+RFV NA ++G GLGL+I ++ Sbjct: 422 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 476 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + + S+ +T +P KE Sbjct: 477 IEKLGGRIGVESTLGVGSTFWFTLPLKE 504 >gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1012 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 180/374 (48%), Gaps = 42/374 (11%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D + + + GPDG I NP S++ + G + ++ A RY+ + Sbjct: 447 DSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEVM-GKSLHHLLAP-ERYHTD------- 497 Query: 501 AAIITSFDDERKSLQG-----TLELLSDSVLEYSIIPLPNAQTMLTFV------------ 543 I + + +++ QG T+EL S + + +P + +M + + Sbjct: 498 --ITKAMPEFQRTGQGNAVGKTIEL---SAIGKDGLEIPISLSMSSVLLQGRWHAVGIAR 552 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++ AE+ L + E A+ K+ F+ ++S+ELR+P I+G LL+T+ LN Sbjct: 553 DISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFNGIMGMMQLLQTT---DLN 609 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V SS + L+ DIL+L+ ++AG M + + +LL + + + Sbjct: 610 DEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEFRTGELLESLSDLFSAEAL 669 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNG 717 + I ++ + + V+ D+ R+ Q+ ++ NA+ F+ GS T I A + Sbjct: 670 KKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTESGSVQVHLTSISGAKGGDT 729 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 FSV + G IP+D ++FN FV ++ + +G GLGLS+V+ +++ G++S+ Sbjct: 730 RLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDMMNGNISVE 789 Query: 776 SSDEGVTTINCRIP 789 S + TT++ +P Sbjct: 790 SEVDRGTTVHVVLP 803 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 135/253 (53%), Gaps = 9/253 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++TD A+ AL + + ++A+E K+ F+ +S+E+R+P+ +IG DLL+ + +L Sbjct: 940 LDITDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRET---NL 996 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q V I SS LL ++NDILD + +++G M+L+ + + + +L+ + ++ Sbjct: 997 SRDQVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNA 1056 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGD 718 H+ ++ + + + D S + D R Q+ +L NA+ F++ + V + G+ Sbjct: 1057 HQKDVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGE 1116 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++NG + +D + +F F R+ G GLGLSI +SF+ L GG + ++S Sbjct: 1117 LRIAVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTS 1176 Query: 777 SDEGVTTINCRIP 789 + IP Sbjct: 1177 KHHHGSRFTFTIP 1189 >gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1839 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 19/257 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ +Q ++ Sbjct: 1140 QARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSERQVEF 1199 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + + I +LL + + + Sbjct: 1200 ARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLAATARPFRHEAENRRLAF 1259 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------- 719 V +LG+ + D +RL Q+ +LSNA F+ +G V L+ A G + Sbjct: 1260 DVEVAPELGTLITDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGGWSADHPILRQA 1318 Query: 720 ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 F V + G IP + K +F F A G R G GLGL+I NL GG + Sbjct: 1319 PMVVAFEVSDTGIGIPPEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGEI 1377 Query: 773 SISSSDEGVTTINCRIP 789 + S+ +T +P Sbjct: 1378 QLRSASGVGSTFTLYLP 1394 >gi|73668223|ref|YP_304238.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395385|gb|AAZ69658.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 445 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 138/252 (54%), Gaps = 9/252 (3%) Query: 547 DSVRA-ERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+R+ E + KNE L+ +I KN + ++++ELR+PL ++IGF+DLL Sbjct: 189 ESLRSLEEKIELKNEFLKAKKDIDASNWAKNGLIVNMNHELRTPLNSVIGFSDLLLEGAF 248 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 GSLN++QS+YV I S LL +++++LD++ ++AG LNY + + LL EV+ S+ Sbjct: 249 GSLNTRQSKYVSNILISGKNLLEIISNLLDISRLEAGEKNLNYEDVDIASLLGEVRMSLL 308 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + I++ D L + ADR +L QI +++NA+ + + V + A + G Sbjct: 309 SFASSKKVSIEIKVDASLENIRADRTKLRQILYSLMNNAIKLTPEKKKVTVSALKKEGML 368 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V ++G + ++ + + F+ + G GLGL I ++FI++HGG + + S Sbjct: 369 EIKVSDSGIGLSKEDHERMLMPFIQADLSTTSGYGGTGLGLYIAKNFIDIHGGKIWVESK 428 Query: 778 DEGVTTINCRIP 789 +T +P Sbjct: 429 GGKGSTFIFTLP 440 >gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 968 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 13/252 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +AE + + E R+ E+++SFV VS+E R+PLT I+ ++LL + Sbjct: 718 DITPLKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTPLTAILSSSELLDRYSKKLTD 777 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN------DLLNEVKQS 657 K+ + + I + + + L++D+L + +AG KL + +N D+++ ++ S Sbjct: 778 EKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAG--KLTFKPASMNLIAFCQDIVDTLQMS 835 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 I+ + I + G G D + L I + ++SNA+ +SS+GS V ++ + Sbjct: 836 ISQQHS-----INFVCHGDCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCEGE 890 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IF +++ G IP + K +F+ F + G +G GLGL+IV+ ++LHGG +++ S Sbjct: 891 SAIFHIQDQGIGIPPEDIKKLFSSFQRAGNVGTIQGTGLGLAIVKKCVDLHGGLITVESE 950 Query: 778 DEGVTTINCRIP 789 TT +P Sbjct: 951 VGKGTTFTIILP 962 >gi|158337403|ref|YP_001518578.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158307644|gb|ABW29261.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 790 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL I+GF+ LL+ + Q + ++ I+ S T LL L+NDIL Sbjct: 341 KSEFLSNMSHELRTPLNAILGFSQLLQQDP--QIPPHQQKQLDIINQSGTHLLALINDIL 398 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 +++ ++AG L S I L +LL+ VK + K + + + L F+ D ++ Sbjct: 399 EMSKIEAGFSTLKQSPIELQELLDSVKAMMELKATAKQLGFEFVYSPALPQFIEVDAGKV 458 Query: 688 LQIFSKILSNAMDFSSKGST-----VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740 QI +LSNA+ F+ KG I A+ +G F+VK+ G I + + +F Sbjct: 459 RQILMNLLSNAIKFTQKGYVSLTVDAIYPASDSSGLMQLRFAVKDTGLGIAPEEIEQLFT 518 Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 FV A R + G GLGL++ F L G +++ S + +T C I Sbjct: 519 PFVQTASGRITQMGTGLGLALSRKFAQLMKGDITVDSVVDQGSTFTCWI 567 >gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem] gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 829 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 8/239 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L NE L++ D +K+ F+ +S+ELR+PL ++IG++ ++ LG L Q + + + Sbjct: 581 LAAANEKLKEVDRLKSMFIASMSHELRTPLNSVIGYSSIILNEWLGPLQPTQKENLAIVL 640 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL+L+ND++D++ ++AG ++++ L DL+ E Q + ++ + V + Sbjct: 641 RAGKHLLSLINDVIDVSKIEAGQIEVHNEEFDLFDLVQEAAQQLEPEIRGKGLAFPVTNI 700 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +ADR+RLLQ +LSNAM ++ +GS I A +G + SV ++G I E Sbjct: 701 HL--QLLADRRRLLQAVLNLLSNAMKYTVEGS--IQLAVNFDGTWAEISVADSGIGISEQ 756 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTTINCRIP 789 K VF F + ++ RG G GLGL + + + GG ++ S+ +T RIP Sbjct: 757 DAKLVFQPFRRLDSSLRGTVSGTGLGLYLTNKLVREVLGGTITFVSAVGQGSTFTIRIP 815 >gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 810 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L +K + A+ K++F+ H+S+ELR+PL I+GF +++ L L +Q + + Sbjct: 335 RQLEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERDPL--LTHQQQESLAI 392 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S LL L+ND+L+++ ++AG + L+ L++LL ++ + + + V Sbjct: 393 INRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVN 452 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 L +V +D +L Q+ +LSNA+ F+ +G TV L+AA + F+V + G Sbjct: 453 LAADLPRYVISDEGKLRQVLINLLSNAVKFTDQG-TVTLEAAYQHHTGANYLTFAVADTG 511 Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + + +F F S A G GLGLSI F++L GG +S +S Sbjct: 512 RGIAPEEQEHLFQPFFQSAAGLKTEEGTGLGLSISRQFVDLMGGQISANS 561 >gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1342 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E EA +A K+ F+ ++S+E+R+P+ ++G LL ++L S+Q Y + I Sbjct: 652 LVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQL---TSRQRDYAQTIR 708 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++NDILD + ++AG M+L L+ + V +AT+ N+ + + D Sbjct: 709 RSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVD 768 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729 K+ D RL Q+ + +NA+ F+ +G VI A N F+V + G Sbjct: 769 RKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTGVG 828 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + + +F F V N+ Q G GLGL+I + ++L GG + + S Sbjct: 829 ISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVES 877 >gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 537 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ VS+ELR+PL +I+GF++L++ + G+ + S+Y I AS + LL L+NDI Sbjct: 301 KSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHLLTLINDI 360 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ ++AG M+++ + + V + + + N+ I+ D +G AD +R Sbjct: 361 LDLSKIEAGQMEIHSEWVDPAAITRAVVELMREQATRKNLTIECRLDPSIGPLRADPRRF 420 Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSI-PEDMCKSV--FNRFV 743 Q+ +LSNA+ F+ TV ++ G +V + G + +D+ +++ F + Sbjct: 421 RQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARALEPFGQID 480 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 S R Q +G GLGL +V LHGG +S+ SS GV T Sbjct: 481 SPITRSQ-QGTGLGLPLVSQMARLHGGRLSMDSS-PGVGT 518 >gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] Length = 927 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 14/223 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++NDILD + ++AG + L ++L EV AT HE + I + D K+ Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A RD+ D F V++ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 +F F S A R G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAF-SQADASISRCYGGTGLGLVITQKLVSHMGGEISLTS 502 >gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328] gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328] Length = 522 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 9/243 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + E A+ K+ F+ ++S+ELR+PL I+GF L+ T++ +L ++ Q++E Sbjct: 112 RQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPEKRQHIEI 169 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S LL L+NDIL+++ ++AG L + L D L ++ + N+ + Sbjct: 170 INRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSKNLHLIFE 229 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 L ++ AD ++L Q+ +L NA+ F+ +GS V ++ + N D F V++ G Sbjct: 230 RPQGLIRYIKADDKKLRQVLINLLVNAIKFTDEGS-VTVRVSHQNQDTSDILKFEVEDTG 288 Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + C+ +F F + G GLGL+I + F+ L GG +++ S +T + Sbjct: 289 LGIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVTLMGGEITVRSCLNQGSTFSF 348 Query: 787 RIP 789 IP Sbjct: 349 TIP 351 >gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1778 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + ++ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1269 ARQVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1328 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 1329 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLIDYVEATFRPLTAEKGLDLS 1388 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716 V +S + D QRLLQ+ +LSNA+ F+ GS ++++ ARD+ Sbjct: 1389 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1448 Query: 717 -------GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1449 GSLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1508 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1509 LLGGEIHAQSEPGRGSTFTLYLP 1531 >gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1792 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1311 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1370 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ VDAG M ++ + I L L++ V+ + E + + Sbjct: 1371 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1430 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715 V +S G + D QRLLQ+ +LSNA+ F+ GS ++++ ARD Sbjct: 1431 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1490 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + + I FSV + G I + +F F R+ G GLGLSI Sbjct: 1491 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1550 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1551 LLGGEIHAQSEPGRGSTFTLYLP 1573 >gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39] Length = 846 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612 AL E + A+ K+ F+ ++S+E+R+P+ I+GF DLLK G + + KQ Y++ Sbjct: 349 ALEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDA 404 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+A L+ L++DILDL+ ++AG ++L Y + L LL E++Q + +++ Sbjct: 405 IAAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQIN 464 Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNN 726 + + + D RL QI I+ NA+ F+ +GS T+ ++A + D + + Sbjct: 465 IEPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADT 524 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I D + +F FV + + RR G GLGL+I NL GG +++ S Sbjct: 525 GMGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQ 577 >gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 921 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 13/223 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL ++GFT +LKT LN Q Y+ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKTR----LNPSQQDYLLTIEKSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L + L+EV + +A HE + + + D ++ S Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIPPSL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG--DFIFSVKNNGSSIPEDMC 735 + D R+ Q+ + ++ NA+ F+ +G+ TV LK+ +D+ + F V++ G I E Sbjct: 400 IGDALRIQQVLTNLIGNAVKFTERGNIDVTVELKSDKDDEGIELQFMVRDTGIGISERQQ 459 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG VS++S Sbjct: 460 AQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 502 >gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM 14863] gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 444 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 R+ ++++ FV +V++ELR+PLT+I GF + L G+L+ ++ +VE + S L Sbjct: 211 RQLEQMRTEFVANVTHELRTPLTSIQGFAETLLE---GALDEPETARHFVEIMLRESRHL 267 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L++++LDL+ V++G ++ V +L+ A K +++ + L Sbjct: 268 GALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLI 327 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL+Q+ S ++ NA+ ++ G + L A RD +V + G+ IP+ +F Sbjct: 328 NGDPDRLVQVLSNLVENAIKYTPAGGRITLSARRDGDGVRIAVADTGAGIPQADLGRIFE 387 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF V A G GLGL+I + + HGG + + S +T +P+ Sbjct: 388 RFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILPA 439 >gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7] Length = 1172 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + + L++A + K+ F+ ++S+ELR+PL + + LL + +L ++Q ++ Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667 E I ++ LLNL+NDILD++ V+AG +++ N S L + L + Q +A E + Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 592 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 V I G DRQRL QI +LSNA+ F+ GS ++ + F V+++ Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRHPGAGIAFIVRDS 652 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I E+ + +F F RR G GLGLSI L GG +S++S+ Sbjct: 653 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705 >gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 641 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 20/260 (7%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 P+P LTF ++T +L+K D+IK+ FV VS++LRSPLT I+G+ Sbjct: 396 PIPEVGIALTFSDIT--------------SLKKLDQIKSDFVHTVSHDLRSPLTAILGYV 441 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +L++ ++G++N Q ++ I S + +LV+D+LDL ++AG + L+ ++ Sbjct: 442 ELIE--RVGTVNDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAG-FDTRKEPVALDAII 498 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + + E +++ + S +A+ ++ Q+ +L NA+ ++ +G + + Sbjct: 499 RYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNAIKYTPQGGKIQVS 558 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 + +F V +NG IP VF++F SNA G GLGL+IV+S + H Sbjct: 559 LRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNAA-PDVSGTGLGLAIVKSIVEAHE 617 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S+ +T +P Sbjct: 618 GRIWVDSAVGTGSTFTVVLP 637 >gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 953 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 17/249 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++++ E L + L +A +K+ F+ ++S+ELR+PL I+G ++ LK LG+L Sbjct: 544 VDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGAL 603 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSI 658 NS Q + I S LL L++DILD++ ++AG ++L + + + +L L V Sbjct: 604 NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 663 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------- 710 TK + NI I + + D +RL Q+ +LSNA+ F+ K + L Sbjct: 664 FTK--QINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSP 721 Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 A FSV +NG I D +F F + ++ Q G GLGL++V+ I L Sbjct: 722 NAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIEL 781 Query: 768 HGGHVSISS 776 HGG V +SS Sbjct: 782 HGGCVEVSS 790 >gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 411 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 134/242 (55%), Gaps = 8/242 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q +LT ++T+ +R L + E A+++K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++++ Y++ ++ ++ LL +V D+LDL+ +++G + +YS +NDLL + Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHG 276 Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ ++ IK+I ++ +++ R++QI + ++ NAM F+ G + Sbjct: 277 ILNIRL-KDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQ 335 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F V + G IP +F+RF H + G GLGL++ ++ + GG + + Sbjct: 336 GEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNLGGEMGV 393 Query: 775 SS 776 S Sbjct: 394 ES 395 >gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM 17393] Length = 979 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 7/236 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R E+AL E +++ +K++F+ ++S+E+R+PL I+GF+ LL ++ Sbjct: 594 ITERKRQEKALIAAREKALESERLKSAFLANMSHEIRTPLNAIVGFSSLLTATED---EQ 650 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ +++ I ++ +LL LV+DILDL+ ++A ++ NY + LN L +V+ ++ ++ + Sbjct: 651 EREEFISIIENNNQLLLQLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRL-K 709 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 N+ ++ I ++ RL Q+ +L NA F+ GS R + F VK Sbjct: 710 PNVVLEFIPGAAQCHVQTEKNRLSQVLINLLVNATKFTQTGSITFGYEIR-GKELYFYVK 768 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I ++ +F RF Q G GLGLSI ++ I G + + S +G Sbjct: 769 DTGMGISQEDQNKIFERFTKVDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKG 822 >gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] Length = 2002 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 145/281 (51%), Gaps = 17/281 (6%) Query: 526 LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 L ++PL NA+ ++ ++T++VR ER L +A +A+ +K+S + ++S+E+R+ Sbjct: 1711 LRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRMKSSLLANMSHEIRT 1770 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQ--------SQYVEYISASSTILLNLVNDILDLATVD 634 PLT+I+GF ++++ ++GSL ++ I S L++ + +L+L+ ++ Sbjct: 1771 PLTSILGFAEMIE-EEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLE 1829 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AG M L + L++ EV + + +R++V + G+ AD + + + Sbjct: 1830 AGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQADGGGVQIVLRNL 1889 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 +SNA+ ++ G + L+ R+NG + V+++G + + + +F F A G R Sbjct: 1890 VSNAIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPF-RQASEGMAREY 1947 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGL++ + G + + + TTI ++P +E Sbjct: 1948 EGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEE 1988 >gi|42781128|ref|NP_978375.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42737049|gb|AAS40983.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 453 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L + + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S K V ++A ++ G + VK+ G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri DSM 4166] Length = 908 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S L +Q Y+ I S+ Sbjct: 264 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTIEKSA 319 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + V D Sbjct: 320 DSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDT 379 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIP 731 L S V D RL Q+ + ++SNA+ F+++G+ + D+ SV++ G + Sbjct: 380 PL-SLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTGIGLT 438 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780 + +++F F N+ Q G GLGL I + I GG + + S DEG Sbjct: 439 DQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEG 490 >gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 915 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 266 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 321 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 322 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGL 381 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ RD+ + F V++ G I E Sbjct: 382 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQA 441 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 442 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 483 >gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 940 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 18/249 (7%) Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 N Q L VN +T+ E L E E AD +K++F+ ++S+E+R+PL I+GF+ Sbjct: 688 NGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSS 747 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ + G + K+ QY+ I ++ +LL L++DILDL+ ++AG + +N L Sbjct: 748 LM--GETGDMEEKR-QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCE 804 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++ + + K ++V+ D L V+DR RL Q+ + ++NA+ F++ GS + Sbjct: 805 DIVRFMKMKAKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVG 861 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINL 767 D F V + G I +M +F+RF+ + H G GLGLSI +S I Sbjct: 862 YNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH-----GTGLGLSISKSIIEQ 916 Query: 768 HGGHVSISS 776 GG + + S Sbjct: 917 LGGTIGVDS 925 >gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1013 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 19/251 (7%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q + T NVT + E L E A+ K+ F+ ++S+E+R+PL ++GFTDLL Sbjct: 461 QFIATQTNVTHRKKHEAELRRAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLLR 520 Query: 597 SKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 G+ N K+ +Y++ I S LL+++ND+LDL+ ++AG ++ ++ EV Sbjct: 521 ---GAANDPQKRDEYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEV 577 Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + K E +R+ G++ V D RL Q+ + ++ NA+ F+ GS I Sbjct: 578 VSILRVKADEKALRLTCDWSGEVPPQIVTDSVRLRQLLTNLIGNAIKFTQFGSVSI---- 633 Query: 714 RDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 D G F +++ G IPE+ +F+ F RR G GLGL+I Sbjct: 634 -DAGWHAPLQQLTFVIRDTGIGIPEEKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIA 692 Query: 766 NLHGGHVSISS 776 L GG VS+ S Sbjct: 693 RLLGGDVSVES 703 >gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24] gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1829 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1348 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1407 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ VDAG M ++ + I L L++ V+ + E + + Sbjct: 1408 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1467 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715 V +S G + D QRLLQ+ +LSNA+ F+ GS ++++ ARD Sbjct: 1468 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1527 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + + I FSV + G I + +F F R+ G GLGLSI Sbjct: 1528 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1587 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1588 LLGGEIHAQSEPGRGSTFTLYLP 1610 >gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] Length = 933 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 ++NDILD + ++AG + L + L EV AT HE + I + D K+ + Sbjct: 340 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ RD+ + F V++ G I E Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] Length = 906 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S L +Q Y+ I S+ Sbjct: 262 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTIEKSA 317 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + V D Sbjct: 318 DSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDT 377 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIP 731 L S V D RL Q+ + ++SNA+ F+++G+ + D+ SV++ G + Sbjct: 378 PL-SLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTGIGLT 436 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780 + +++F F N+ Q G GLGL I + I GG + + S DEG Sbjct: 437 DQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEG 488 >gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27] gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27] Length = 963 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ +K F+ VS+ELR+PL I+G +LL+ L + + VE I S+ L N+ Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE---PLPPEAQESVELILESAFRLKNM 788 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V+++LD + ++AG +++ + L LL E+ +S + + +V + +L D Sbjct: 789 VDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVE-ELPLMEVD 847 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ +L+NA F+ G +V L A + V++ G IP++ +F R+ Sbjct: 848 PDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYA 907 Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 H G R G GLGL I + + HGG + + S + Sbjct: 908 RAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEE 944 >gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1829 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1348 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1407 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ VDAG M ++ + I L L++ V+ + E + + Sbjct: 1408 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1467 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715 V +S G + D QRLLQ+ +LSNA+ F+ GS ++++ ARD Sbjct: 1468 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1527 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + + I FSV + G I + +F F R+ G GLGLSI Sbjct: 1528 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1587 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1588 LLGGEIHAQSEPGRGSTFTLYLP 1610 >gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 952 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 10/250 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +M ++ + + E L + +A + + F ++S+E+R+PL IIG + LL + Sbjct: 423 SMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLYDT 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + +++Q +Y+ + S+ L +L++D+LD+ ++AG ++++ L LL ++ Sbjct: 483 QP---SAQQREYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRSTQKV 539 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARD 715 K+ I I V+ D ++ +FV D L QI ++ NA F+ +G I+ K ++ Sbjct: 540 FEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKVKKE 599 Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771 GD F+V + G IP D VF +F N+ + +G GLGL+I + + L GG Sbjct: 600 EGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQVNSQGYKHKGTGLGLAITKELVELQGGT 659 Query: 772 VSISSSDEGV 781 +S+ S EGV Sbjct: 660 ISVKSQ-EGV 668 >gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234] gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234] Length = 917 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 7/264 (2%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +P+ T+ + ++T+ + + L A E K+ F+ +S+ELR+PL IIG+++ Sbjct: 386 IPDGGTVAVYTDITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSE 445 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L ++ +E I+++ LL L+NDILDL+ ++A M++ + + LL Sbjct: 446 MLIEEAHDHGENELVPDLEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLG 505 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +V ++A M +N DG LG +D+ +L Q +LSNA F++ G V L A Sbjct: 506 DVSATVAPLMAKNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFTT-GGRVTLSA 564 Query: 713 ARD---NGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 R+ +GD +F V + G + + +FN F R G GLGLSI SF Sbjct: 565 RREGRADGDWLVFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSR 624 Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790 + GG V++ S + +P+ Sbjct: 625 MIGGIVNVESEAGKGSVFTMEVPA 648 >gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] Length = 497 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 NEALRKA DE+K+ F+ ++S+E+R+PL I+GF+ LL + ++ I Sbjct: 262 NEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESDLTKEDIIEFTSLIEK 321 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S +L+ L++DILDL+ +++ M+ ++ ++ L+ +LNE+ + M E + + + G Sbjct: 322 NSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMRE-GVELLLDLPG 380 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + + D RL Q+ + +++NA+ F+S+G+ I +G V++ G+ + ++ Sbjct: 381 QEVTVYTDPARLSQVINNLVNNAIKFTSEGNIRIGYRPAASGYVNIFVEDTGTGMSREVL 440 Query: 736 KSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F+RF ++G ++G GLGLSI ++ + G + ++S+ T +P K Sbjct: 441 EHIFDRF----YKGDSFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTITLPLK 494 >gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 796 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 13/243 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--------KTSKLGSLNSKQSQYVE 611 EA A++ K+ F+ ++S+ELR+P+ IIG++++L S L + + ++ Sbjct: 283 EAAESANQAKSQFLANMSHELRTPMNAIIGYSEMLMDEAQDMASASALPEVEAVFVPELK 342 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+A+ LL L+NDILDL+ ++AG M L T + +++N+V +I + +N R+++ Sbjct: 343 KITAAGRHLLALINDILDLSKIEAGKMDLYLETFQIPEMVNDVACTIQPLVDKNANRLQI 402 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI-FSVKNNGS 728 +G AD ++ Q+ +LSNA F+ KG + + D+I F VK++G Sbjct: 403 DISPGIGPMRADLTKVRQVLFNLLSNASKFTDKGVIELRVFNHHDEARDWIAFQVKDSGI 462 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + + +F F R+ G GLGL+I F L GG +++ S T Sbjct: 463 GMTREQAARIFEAFTQADASTTRKYGGTGLGLTITRKFCELMGGRITVDSEPGQGTVFTV 522 Query: 787 RIP 789 R+P Sbjct: 523 RLP 525 >gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 734 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 7/255 (2%) Query: 542 FVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + VT+ + +AE L E A K+ F+ +S+ELR+PL IIGF + + + Sbjct: 469 LIGVTEDIERRKQAEVQLLAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQ 528 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LG + + +Y I+AS LL ++ DILDLA ++AG M+L+ + + + ++ + Sbjct: 529 VLGPIPERYREYAGDIAASGRHLLGIITDILDLAKIEAGRMELDENPVEIAPVVEAAIRL 588 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDN 716 + + + + L +AD +R+ Q+ +L+NA+ F+ G +V + A + Sbjct: 589 LRDRGTAARLDLHSDIPASLPRILADERRIRQVVINLLANAVKFTPHGGSVSVSANLTTD 648 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 G V + G + ++ FV R RR G GLGL +V + + +H G ++I Sbjct: 649 GGLALHVSDTGIGMTDEEMSQAVEPFVQVDARIARRHEGTGLGLPMVAAIMEMHRGTIAI 708 Query: 775 SSSDEGVTTINCRIP 789 +S TT+ P Sbjct: 709 ASRPNQGTTVTVTFP 723 >gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72] gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72] Length = 852 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 14/241 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 N+ DSV + +A R+A++ +K+ FV +S+ELR+PL I+GF +L++ Sbjct: 594 NMADSV--SESFQRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDD--- 648 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + N + + + I S LL+LVND+LD+A ++AG M L L LL +V T Sbjct: 649 APNDEVRDHADTIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGT 708 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 + + + G + D RL Q+ + +L+NA+ F+ G +L AR D Sbjct: 709 MAQQKGLAFATEFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPAGEVKLL--ARTEADR 766 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I V++ G I +M +F+RF S + G GLGL++V + L GG V + S Sbjct: 767 LIVGVRDTGPGIAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLES 826 Query: 777 S 777 + Sbjct: 827 A 827 >gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Bradyrhizobium sp. ORS278] Length = 2117 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 20/260 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L KQ ++ Sbjct: 1423 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTVKQVEF 1482 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + ++ I+ +LL V + + + Sbjct: 1483 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSF 1542 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719 + D L S V D +RL Q+ +LSNA F++ G V LK + G + Sbjct: 1543 NIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSADHPVLNS 1601 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 F V + G IP+D K +F F A G R G GLGL+I NL GG Sbjct: 1602 TPAVIAFEVTDTGIGIPQDKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGE 1660 Query: 772 VSISSSDEGVTTINCRIPSK 791 + + S+ +T +P K Sbjct: 1661 IHLRSAPGKGSTFTLYLPLK 1680 >gi|320161337|ref|YP_004174561.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995190|dbj|BAJ63961.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 727 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 39/385 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI---AATCSRYYNE--S 494 ++H++E + G ++L+NPAF L + G ++ I +A + + E S Sbjct: 329 VNHIAEPTFICNATGHLRLANPAFLELIGVDSPEKITGLPLQQIFRPSAGVTLWIKEGLS 388 Query: 495 DGW-----------DLFAAIITSFDD--ERKSLQGTLELLSDS-----VLEYSIIPLPNA 536 GW L ++ + K++ GT LS L+ + + +A Sbjct: 389 SGWTGEVEVQRLSNGLSLPVMLALRPLVPGKTIAGTAHDLSQIKQQQIALQKAYEEIAHA 448 Query: 537 QTMLTFVNVTDSVR----------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 L+ +N R A + L +N AL+ D +K+ FV VS+ELR+PLTN Sbjct: 449 HAELSRMNAELEQRVAEKTASLSEAYQQLERQNIALKNLDRLKSDFVSLVSHELRAPLTN 508 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I G +LL + L +Q ++ + + L V ILDL+ +DAG M L + I Sbjct: 509 ISGGIELLLL-RSKRLPRDATQTLQLVQSEILRLTRFVESILDLSALDAGKMPLFLAPIS 567 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++ ++ VK+ + + IR ++ K +AD Q L + +L NAM ++ +G Sbjct: 568 VHSVIEVVKRQFSHTPNAGRIRWEI--PDKFPDLLADEQALTSVLFHLLDNAMKYAPEGE 625 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764 V+ ++++ F+ ++++G IPE+ +F +F + + G GLGL +V+ Sbjct: 626 IVVKAWSKEDKGFL-EIRDHGQGIPEEDLPLLFTQFFRSRMSDSQTIYGHGLGLYMVQRL 684 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + G + + + EG C +P Sbjct: 685 LEAMNGTIMVRNLPEGGACFTCSLP 709 >gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 963 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ +K F+ VS+ELR+PL I+G +LL+ L + + VE I S+ L N+ Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE---PLPPEAQESVELILESAFRLKNM 788 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V+++LD + ++AG +++ + L LL E+ +S + + +V + +L D Sbjct: 789 VDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVE-ELPLMEVD 847 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R++Q+ +L+NA F+ G +V L A + V++ G IP++ +F R+ Sbjct: 848 PDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYA 907 Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 H G R G GLGL I + + HGG + + S + Sbjct: 908 RAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEE 944 >gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 932 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ V ++ +GD + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 792 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 7/242 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q++L N R R E L A E K+ F ++S+ELR+PL I+G+ +LL+ Sbjct: 533 QSVLAMRNA----RLFRKAEENGRQLAVASEHKSRFFANMSHELRTPLNAILGYAELLRD 588 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G L + +E + ++ LL L+ND+LDL+ ++AG + L + +++ + Sbjct: 589 GLYGELPDRAKSVLERVESNGAHLLGLINDVLDLSKLEAGELSLVLDEYSMRNIVEQAIG 648 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + +RI + + D +RL Q+ ILSNA+ F+ +G V +KA Sbjct: 649 ATYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLINILSNAIKFTDEG-YVAIKAQTLA 707 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 F V + G IP + +F F + R G GLGLSI F+ +HGG +S+ Sbjct: 708 DMFEIVVTDTGPGIPPEDQARIFEAFQQGDNTSTRLKGGTGLGLSISRRFVEMHGGAISV 767 Query: 775 SS 776 +S Sbjct: 768 AS 769 >gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 174/378 (46%), Gaps = 17/378 (4%) Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479 ++DL + L +++ +D +++GV GRI N ++L+ E ++ G Sbjct: 596 AAELDLARQQANLREIEA-VLDSMTDGVVTLDGSGRILDFNKGAKALFGHEPREVT-GED 653 Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 + SR + AA+ + E S++ E + +L ++ P+ T Sbjct: 654 FSLLFTPDSRPAVQ-------AALQRARSGEPASIEAIGER-REGILALTVAPIAGEGTR 705 Query: 540 ---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +VT + R E L A A+ K+ F+ +S+E+R+PL I+GFT+++ Sbjct: 706 RFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMME 765 Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + G + N + Y+ I S +++LV D+LDLA ++AG + L+++ + LNDL+ Sbjct: 766 EQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGASV 825 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714 + + + ++ L +AD + + Q +++NA+ F+ G VI+ A Sbjct: 826 SLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAMT 885 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D G V++ G + D ++ F V+ A + RG GLGL + ++ + + G + Sbjct: 886 DRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTL 945 Query: 773 SISSSDEGVTTINCRIPS 790 ++S T + P Sbjct: 946 RVTSRKHEGTLVEVLFPP 963 >gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 883 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 21/253 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +K EA KA K++F+ ++S+ELR+PL I+GF+ LL + +L +Q Q + Sbjct: 372 RESRDKAEAANKA---KSAFLANMSHELRTPLNAILGFSQLLARDE--NLTLEQKQTLNT 426 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S + LL+L+ND+LD++ ++AG + LN L LL+ +++ A K + + + Sbjct: 427 INRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVLNIQ 486 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAA--------RDNG 717 +L S + D RL Q+ +L+NA+ F+ GS + L A + + Sbjct: 487 KSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGSVTLRVFTQPLPAPFSLNQETLQPSL 546 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +F F+ +++ R G GLGL+I FI+L G + I S Sbjct: 547 SLCFDVEDTGIGIANNELDHIFEAFIQTSSGRRSHEGTGLGLAICHHFIHLMEGDIQIQS 606 Query: 777 SDEGVTTINCRIP 789 TT++ +IP Sbjct: 607 QLGQGTTVSVQIP 619 >gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 761 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+ + E L E ++D +K++F+ ++S+E+R+PL I+GF++L+ S+ Sbjct: 513 LNIQNIKDTEGVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M + LN L+NE+ + M Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631 Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E +R++V ++ VA D RL Q+ S ++NA+ F++ G + GD + Sbjct: 632 PEGVELRMRV---PEIPVIVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IPE+ K VF+RF Q G GLGL+I + GG + + S Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743 >gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 1567 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++T E +L E A + K+ F+ ++S+E+R+PL +IGFTDLL ++ Sbjct: 910 LATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTE 969 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L N+ Q QY+E + S+ LL+L+NDILD + ++AG ++L+ I + +L + + Sbjct: 970 L---NTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVV 1026 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K HE + + + K+ ++ D R+ QI + +L NA+ F++KG + ++A N Sbjct: 1027 KHKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKGEIELRIEAGNKN 1086 Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 ++ F V++ G I + +F F R+ G GLGL+I + L Sbjct: 1087 TEHQREYTFIVRDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNS 1146 Query: 771 HVSISS 776 + + S Sbjct: 1147 KLDVQS 1152 >gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501] gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501] Length = 1249 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615 R D++K +F+ VS+ELR+PLT+I+GF+ L++ ++ + +SK S +E I Sbjct: 1003 RAVDQMKKNFLSMVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQ 1062 Query: 616 SSTILL-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I++ LV+D LD+ +++G + LN I + +L+ S++ +++ Sbjct: 1063 NLDIVVCEGERLSKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVE 1122 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + L + + D RL+Q+F ++SNA+ F+ KGS V +A D+ + + S+ + G Sbjct: 1123 LVEDFSRDLPTILGDEDRLIQVFVNVISNALKFTEKGS-VTCRAEVDHENLLISITDTGI 1181 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I E+ VF+ F V N + G GLGLSI + + HGG++ ++S TT Sbjct: 1182 GIAENDYSKVFDPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFI 1241 Query: 787 RIP 789 P Sbjct: 1242 SFP 1244 >gi|197106945|ref|YP_002132322.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480365|gb|ACG79893.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 514 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 7/229 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+E+ A +I + +S+E R+PL ++G LL+ ++L ++Q YV Sbjct: 6 RPLSERRPAR---AQISAEQLASLSHEFRTPLNGVLGMARLLEGTRL---TAEQRSYVAA 59 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S LL LVND+LD A + AG ++L+ T+ + LL V + ++ + E + I Sbjct: 60 LRESGQHLLTLVNDVLDFAKLGAGRVELHPETMEVESLLRGVAELLSPRAREKGLEIAWA 119 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + +GS AD RL QI NA+ F+ G ++ + + G F+V++ G + E Sbjct: 120 APAGVGSVRADEGRLRQILLNFAGNAVKFTEAGGVLLAVSTPEPGRLRFTVEDTGPGVSE 179 Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +F F + A G GLGL+I GG V + ++ G Sbjct: 180 AARDRIFEAFAQAEASHADLGGAGLGLAIARRLARAMGGEVGVETARMG 228 >gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 816 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 18/244 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D RAE ALT +A+ K F+ ++S+E+R+P+ +IG LL ++L + Sbjct: 120 DISDLKRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTEL---S 176 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV I S+ L+ L+ND+LD + ++AG ++L L D L + S+A + Sbjct: 177 VQQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAA 236 Query: 664 ENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 + + I D + V D RL QI + ++ NA+ F+ KG V+ LK D Sbjct: 237 HKGLELAYHVPVEIPD----ALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTD 292 Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F V++ G I ++ + VF F RR G GLGL+I GG + Sbjct: 293 TDVQLEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKI 352 Query: 773 SISS 776 + S Sbjct: 353 KLES 356 >gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium TW-7] gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium TW-7] Length = 1107 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 132/253 (52%), Gaps = 6/253 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 FV++T+ E L + +A + K SF+ ++S+E+R+P+ +IIGF+DLL + Sbjct: 512 FVDITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---P 568 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN++Q +++ ++ ++ LL L+N++LD A ++ G + + L +++ + + + Sbjct: 569 LNNEQQKHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLE 628 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++ + + I + ++ D RL QI + ++ NA+ F+ GS I + NG Sbjct: 629 AKKKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKFTEHGSVTITVSTTQNGHLF 688 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G I +D ++F FV RR G GLG +I + + L GG +++ S Sbjct: 689 FEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEV 748 Query: 779 EGVTTINCRIPSK 791 T +P K Sbjct: 749 NKGTCFYFSLPLK 761 >gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493] gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493] Length = 683 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 518 EPGVGSEFTCIIP 530 >gi|148262093|ref|YP_001228799.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395593|gb|ABQ24226.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 758 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 35/357 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT--------CSRYYNES 494 ++EGV V D R+ L NPA ++++ R+ G I + C R ES Sbjct: 418 MAEGVVVTDKDNRVILFNPAAQNIFDLVPFRVV-GQPIEQVCRVGEFTLLLDCIREIRES 476 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 G A+ + + K L+ L ++D ++ A +++ ++T Sbjct: 477 GGP--VASRQEEMEVKGKKLKINLSPMADDAGQF-------AGVVMSIRDIT-------- 519 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 A + D +K F+ VS+EL++PLT++ G LL ++ L + Q + Sbjct: 520 ------AEEEVDRMKTDFISTVSHELKTPLTSMKGSLQLL-LNRGKWLTDTERQLLSVCL 572 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ L+ L+N+ILD++ +++G MK +Y + + +L+ + I NI I Sbjct: 573 RNTQRLIRLINEILDISKIESGGMKFDYKPLSMGELVVYAAEEIKGFALSRNISIVNSVG 632 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D RL+Q+ + +LSNA+ FS +G V++ A R+ + SV + G I Sbjct: 633 DHLPLIFGDHDRLIQVLTNLLSNAVKFSPEGKVVMVLAEREGNYLLVSVADRGKVIQWAD 692 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F +F ++NA + Q+ G GLGL+I + I H G + ++ EG +P Sbjct: 693 REKLFKKFQQLNNADQLQQGGTGLGLAICKEIIEKHHGRIYYNAGKEGGNVFTFTVP 749 >gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891] gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891] Length = 886 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 17/241 (7%) Query: 550 RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A+ LT+ E KA + K+SF+ ++S+E+R+PL +IG T++L + L Sbjct: 365 QAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITEVLSDT---DL 421 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q YVE I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ +A + Sbjct: 422 NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESIYDIASIVAPQA 481 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 E I + V IS + D RL Q+ +SNA+ F++ G + +++ G+ I Sbjct: 482 KEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNSGVVSLQLSSKHVGENII 541 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+V++ G I E K +F F R+ G GLGL+I + L G + ++ Sbjct: 542 EMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQLVELMGSQIELT 601 Query: 776 S 776 S Sbjct: 602 S 602 >gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492] gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492] gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 446 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ + E L + D +K++F+ ++S+E+R+PL +I+GF ++ ++ Sbjct: 198 VITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASII--AE 255 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q +Y+ + ++ +LL L++DILDLA ++AG + N + ++D +V ++ Sbjct: 256 LDDREERQ-EYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNY 314 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 K + + + + D D++RL+Q+ + ++NA+ F+S+G ++ G Sbjct: 315 DIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQILLEYHPVEGTG 373 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 FSV + G I D +VF+RFV N +G GLGLSI +S I GG + S Sbjct: 374 QIEFSVTDTGMGIAPDAVATVFDRFVKLNTF---AKGTGLGLSICKSIIEHLGGTIGTES 430 >gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] Length = 1471 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 33/279 (11%) Query: 542 FVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSP 583 V++T +AE AL + N++L + A+ K+ F+ V++ELRSP Sbjct: 957 IVDITARKQAELALDQLNQSLEERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSP 1016 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+GFT LL+ + +L+S+Q Q V I + LL L+N++LDL V+A M+LN Sbjct: 1017 LNIILGFTQLLE--RCDNLDSQQQQQVNLIFNNGQQLLKLINELLDLGKVEANRMELNVE 1074 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702 L L++E+++ ++ + +V D ++ + D+ +L Q+ +++NA+ F+ Sbjct: 1075 WFDLYCLMDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFT 1134 Query: 703 SKGSTVILKAARD------NGD----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR 751 G + L+ D N D F V++ G IP + +F FV + R + Sbjct: 1135 DVGQ-ICLRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQ 1193 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +G GLGL+I F+ + GG + ++S+ T I+ I S Sbjct: 1194 QGTGLGLAICRYFVEMMGGEIGVNSTLGAGTRIHFSIVS 1232 >gi|296532186|ref|ZP_06894941.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296267488|gb|EFH13358.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 835 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ FV VS+ELR+PLT+I L+ G+L + + + ++ L+ L Sbjct: 334 RLDALKSEFVSTVSHELRTPLTSIRASLGLVMGGVAGALPEPVRELLGIAAKNAERLVLL 393 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 VNDILD+ +++G + + LL + + A + +R + +G + V A Sbjct: 394 VNDILDIEKIESGRLDFQRERVSARALLQQAVAANAAYGAQFEVRF-ALDEGPEDALVYA 452 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D QR+ Q+ + +LSNA FS +G V + D G+ F V+++G IP + +F RF Sbjct: 453 DVQRIQQVLANLLSNAAKFSPRGGVVEVSLGVDAGNAFFRVRDHGRGIPPEFRSRIFQRF 512 Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 S+A Q+ G GLGLSI ++ + H G + + EG T+ C Sbjct: 513 AQADASDAR--QKGGTGLGLSISKAIVEHHAGSIGFEEA-EGGGTVFC 557 >gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 736 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 140/264 (53%), Gaps = 16/264 (6%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDL 593 ++L+F+ +T + + L E + R+ ++ +K+ F+ ++S+E+R+P+ ++GFT L Sbjct: 197 SLLSFLYITSRIYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMNAVLGFTHL 256 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ LN K +YV I + LL+++NDILD++ +++G+M+L + L +++ Sbjct: 257 LQQQ---PLNEKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVSFSLRGMMHS 313 Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 ++ K E + + V I G D RL Q+ +++NA+ F+ +G V ++ Sbjct: 314 LQLMFQPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTPQGQ-VTVRV 372 Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + G+ +F++ + G I + ++F+RF R+ G GLGL+IV+ + Sbjct: 373 SPVGGNESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGLGLTIVKQLV 432 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L G +S+ S +T ++P Sbjct: 433 ELQHGTISVESELGKGSTFLVQLP 456 >gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 917 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E+ L + +A A K++F+ +S+ELR+PLT IIG++ LL+ + + Sbjct: 377 RVEQELIKARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQLVSKGIYDTVAHD 436 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I A+ T LL L+NDILD++ ++AG M ++ + DL+ +I ++ +N R+ Sbjct: 437 VGRIRAAGTHLLALINDILDISKIEAGRMTVSVEYADVADLVRSAVNTIIPQIEKNRNRL 496 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 V +G +D ++ Q +LSNA F+ G V L +R D F F V + Sbjct: 497 HVHCPPDIGILNSDATKVRQALINLLSNAAKFTEDGE-VTLTVSRYQKDHQTWFRFVVAD 555 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP D +F F V ++ + G GLGL++ + L GG +++ S+ +T Sbjct: 556 TGIGIPADKHDKLFKAFSQVDDSPTRKYGGTGLGLALSQRLCELIGGRITMESAVGVGST 615 Query: 784 INCRIP 789 IP Sbjct: 616 FTMEIP 621 >gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044] gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 897 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 120/218 (55%), Gaps = 7/218 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+E K++F+ ++S+E+R+P+ I+G T L + L ++Q +Y+ + +S+ LL+ Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + +++G M+++ + + + + + E I + V IS + Sbjct: 319 IINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL QI + +L NA+ F+ +G ++ + A D+ + F +++ G I + K++F Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDNRWRFRIRDTGIGIAPEKQKAIFE 438 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++L GG +++ S Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVES 476 >gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2654] Length = 600 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 179/385 (46%), Gaps = 34/385 (8%) Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475 E TV+VD+ + +I+ + +G AVF + R+ ++NPA+ + + E + Sbjct: 60 LERKTVEVDIAKRR------LWSSIETVEDGFAVFDAESRLVIANPAYYAPFDGLEC-IR 112 Query: 476 PGTHIRNIAATC---------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 PG H I R E W + T + R+ + L + + L Sbjct: 113 PGAHYEEIVEAALSEGIVDIGERTVPEWRDW-MLERWATDAPEPRQ-----IRLWNGAYL 166 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 P T+ ++VT ++R + AL A K++F+ ++S+E+R+P+ Sbjct: 167 RLVDRRAPGGDTVSMAMDVTQAIRRQDALRAARARAEAASRAKSAFLANMSHEIRTPMNG 226 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++G DL+ L+ + + YV+ I +S LL ++ND+LD + ++A ++L+ Sbjct: 227 VVGMADLMAEH---DLDEEMASYVDTIRSSGRALLTIINDVLDYSKIEAAKLELHLEPFD 283 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705 L + +V + + E ++I + D L + + D R+ QI + ++ NA+ F++KG Sbjct: 284 LEQTILDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVRVRQILTNLIGNAVKFTAKG 343 Query: 706 STVI-LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 ++ + D GD +V++ G IP DM VF F V + G GLGL Sbjct: 344 HILVRVIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGL 403 Query: 759 SIVESFINLHGGHVSISSSDEGVTT 783 +I ++L G V + S+EG+ + Sbjct: 404 AITRQLVSLMLGEVWV-ESEEGIGS 427 >gi|330810584|ref|YP_004355046.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378692|gb|AEA70042.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1131 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 130/253 (51%), Gaps = 4/253 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + ++AL + EA A+ K+ +V +S+ELR+PL +I+GFT +L+ Sbjct: 649 QTQLLMQEIEAHRLTDQALQDAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQILQR 708 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ + + I S + LL+L++ +LD+A ++AG ++L + I +L+++++ Sbjct: 709 D--AAMPEQHQDALATILRSGSHLLSLIDGLLDVAKIEAGKLRLEATEIPFPELIHDLEL 766 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + +R ++ GK+ + V D +R+ QI +L NA++F+ G V L+ + Sbjct: 767 MFTPQARDKGLRFRLELIGKMPAVVRGDEKRVRQILINLLGNAVNFTDSGE-VCLRVSYM 825 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F + + G I + + +F F Q +GVGLGL+I +L GG + + Sbjct: 826 RETATFDIIDTGIGIDPEHIERIFQPFERGDLMRQDKGVGLGLTITRMLTSLMGGELQVK 885 Query: 776 SSDEGVTTINCRI 788 S + T R+ Sbjct: 886 SQQDKGTCFQVRL 898 >gi|228920707|ref|ZP_04084048.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838925|gb|EEM84225.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 443 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA++IKN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQIKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGAFSVTSKEGIGTTILIKLP 442 >gi|223983581|ref|ZP_03633762.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM 12042] gi|223964426|gb|EEF68757.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM 12042] Length = 934 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K ++++ + ++ +S++LR+PLT+I G +L S +++ Q + I+ S L+NL Sbjct: 691 KNEQLRANLLRSISHDLRTPLTSISGNAGILLNSPQSLDSARSRQLIADIAEDSAWLINL 750 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++L + ++ G M LN T ++ +++ E Q I+ E++I + L D Sbjct: 751 VENLLSITKIENGTMSLNLQTELMEEVITEALQHISRHRREHHIVHEECPQIVLVRI--D 808 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q ++Q+ +++NA+ ++ +GS + +++ + + + V ++G IP+ M + +F+ F Sbjct: 809 SQLMMQVIINLVNNAIQYTPEGSRITIRSFLEGQELVVEVADDGPGIPDAMKERIFDLFY 868 Query: 744 SNAHRGQ----RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++ RGQ RRG+GLGL++ +S I+ HGG +++ + + R P++E Sbjct: 869 TS--RGQIADSRRGMGLGLALCQSIISAHGGRLAVRDNVPHGALFSFRCPAEE 919 >gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1200 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 14/246 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T +AE L EA A+ IK+ F+ ++S+E+R+P+ I+GF +LL L Sbjct: 687 TITDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELL----LN 742 Query: 601 SLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 N ++ Y++ IS+S LL L+NDILDL+ ++AG ++LNY I L +L+ +V Q + Sbjct: 743 IHNDPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFS 802 Query: 660 TKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD 715 T+ +++ + + + D RL QI I+ NA+ F+ KG TV + Sbjct: 803 TQAQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLAT 862 Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 N ++I SV++ G I +F+ F + + R+ G GLGLSI + + GG Sbjct: 863 NNNYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGG 922 Query: 771 HVSISS 776 + + S Sbjct: 923 QIILQS 928 >gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 1192 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 533 LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 LPN + ++T RAE LT+ +A K+ F+ VS+E+R+PL IIGF+ Sbjct: 924 LPNGSGYCAVLRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIRTPLNAIIGFS 983 Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ K G + N + Y+ I+ S +L+LVND+LD++ ++AG ++ + + LND Sbjct: 984 ELMIDEKFGPIGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAHEAVPLNDT 1043 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L +V + + + + I+ +L VAD + + QI +LSNA+ ++ G V++ Sbjct: 1044 LAQVIAMMQPQANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVRYTPAGGQVVV 1103 Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINL 767 + +G + V++ G + F NA R +R G GLGL + + + Sbjct: 1104 STVYERDGSVVLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLGLPLTRAMVEA 1163 Query: 768 HGGHVSISSS 777 + SI+S+ Sbjct: 1164 NRAQFSIAST 1173 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + + AL + +A K+ F+ ++S+E+R+P+ +IG + LL ++L N Sbjct: 518 DVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL---N 574 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q V I SS +LL ++NDILD + +++G ++L LN+++ +V K+H Sbjct: 575 EEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVH 634 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN 716 + + I + V D RL QI +LSNA F+ +G T V+ A D Sbjct: 635 AGGLELLYDIPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQ 694 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V++ G + ++ +F F RR G GLGL I + GG + + Sbjct: 695 ATLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEV 754 Query: 775 SSS 777 S+ Sbjct: 755 ESA 757 >gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25] gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25] Length = 932 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ V ++ +GD + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 1228 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 16/353 (4%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESD 495 E ++ L GVAV ++ L N F SL + + + SP + + + + Sbjct: 445 EVLESLPFGVAVLNGQQQVILRNRLFGSLQGYPPDLFQKSPLMFAEMVRFSYEQGHYPQR 504 Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555 +D A + R+S++ L + LE P+ +LT+ ++T RAE+AL Sbjct: 505 SYDDVLAEYLAMIGSRQSVRIERSLPGNQYLEIRGQPISADWILLTYTDITAFRRAEQAL 564 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 ++ A+ K+ F+ ++++ELR+PL +IG LL S LN+ Q Y + I+ Sbjct: 565 SQARTEAETANLAKSDFLANMTHELRTPLNAVIGLARLLTESP---LNAWQRDYADKIAL 621 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 S+ L L+NDILDL+ ++A +++ LN LL + + + I + + ++ Sbjct: 622 SAQSLQVLINDILDLSKMEANQLRIEQIPFSLNLLLRTAASVLGVGVGQKAIAVVLDLAP 681 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFI-FSVKNN 726 + V D R+ QI ++SNA+ F+ +G V+ + A + +V++ Sbjct: 682 DVPDALVGDPLRVQQILLNLISNALKFTERGEIVVSVRCQSMMPVAAGAPILLQIAVRDT 741 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 G I +++FN F+ R G GLGL+I + + GG +S+ S+ Sbjct: 742 GIGIAVAALETIFNAFIQADASTSRLYGGTGLGLTISNRLVTMMGGQISVDST 794 >gi|167821444|ref|ZP_02453124.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 91] Length = 391 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 12/226 (5%) Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 +A R+AD +K+ + VS+ELR+PL I G+ ++L+ G+L Q Q ++ I Sbjct: 2 RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDR 58 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S+ L +V DILD +++ G ++L+ + L ++N+V ++ + I + V + Sbjct: 59 SARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--EC 116 Query: 676 KLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + + D +RL Q+ S +LSNA F+ +G V + R + +V + G I + Sbjct: 117 ALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPE 176 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 VF F A RRG+GLGLSIV LHGG V +S+ Sbjct: 177 FLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 222 >gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii 'MSU Goat Q177'] Length = 669 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 384 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 504 EPGVGSEFTCIIP 516 >gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 939 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 8/216 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ H+S+ELR+PL I+G+ +LK K +L+ +Q + I S LL L+ Sbjct: 475 ANQAKSDFLAHMSHELRTPLNGILGYAQILKRDK--NLDRRQVDGLMVIQRSGEHLLTLI 532 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682 +DILD+A ++AG M+LN+S + L ++ + +++ K E + ++ D G V Sbjct: 533 DDILDMAKIEAGRMELNFSDVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRV- 591 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+ ++SNA+ F+ +GS + F V++ G I E +++F F Sbjct: 592 DEIRLRQVLLNLISNAIRFTEQGSVRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPF 651 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VS+A R + G GLGL+I + L G + + S Sbjct: 652 EQVSDA-RYRSGGTGLGLAISRELVRLMGSEIHVES 686 >gi|167648426|ref|YP_001686089.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167350856|gb|ABZ73591.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 627 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K+ F+ ++S+E+R+PL ++ T+++ +G L++ Q + + I S +LL+++ Sbjct: 244 ANVLKSHFLANMSHEIRTPLNGVLAMTEVMA---MGELSAAQRERLSVIRESGDLLLSVL 300 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LDL+ ++AG + L L L +++S AT+ + N+ V ++ LG + D Sbjct: 301 NDVLDLSKIEAGRLDLVERDFDLASLALSIRESYATQARQKNLEFGVFVAPEALGPWRGD 360 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 RL QI ++SNA+ F+ +GS + A+ D+G + V + G I + +F++F Sbjct: 361 ADRLRQILGNLVSNALKFTLEGSVSVRFASADDGSGLRIDVVDTGIGIAAESLPRLFDKF 420 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792 V RR G GLGLSI L GG V + S + +G T T+ +P E Sbjct: 421 VQADSSTTRRFGGSGLGLSICNELAALMGGGVHVQSREGQGSTFTVVVAMPRGE 474 >gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120] gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] Length = 575 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 42/338 (12%) Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 W+T P + +A +R N +DL A + T +DE L +L L + V Sbjct: 266 WRTSRAIAEPVIMVTQVAEQVARKPN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 319 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E + + L + E A + K+ F+ +VS+ELR+PL Sbjct: 320 ERT-----------------------KELEQAKELAEAASKAKSIFLANVSHELRTPLNA 356 Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG + LLK +L+ + + +E I+++ LL L+NDILDL+ ++AG M L Sbjct: 357 VIGLSQLLKDDAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIF 416 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + L+N V ++ + +NN +++ D LG+ AD+ R+ Q+ +LSNA F++ G Sbjct: 417 DVVTLINNVVVTVKPTIEKNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNG 476 Query: 706 STVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 + L R+ DF+ F+V + G + + +F F ++ G Sbjct: 477 R-IKLTVRREKEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGT 535 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GLGL+I F + GG + + S +T +P +E Sbjct: 536 GLGLAISRHFCQMMGGEIIVKSQLGLGSTFTVYLPLQE 573 >gi|309789938|ref|ZP_07684514.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308227958|gb|EFO81610.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 448 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 4/241 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ ++E+ L +A++ K+ F+ ++S+ELR+PL I+GFT L G L + Q + + Sbjct: 210 EQRVSERTTELERANQAKDMFLANMSHELRTPLNAILGFTGTLLMKLPGPLTADQERQLN 269 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ LL+++NDILD+A + AG +++ + ++LNEV + + + + + Sbjct: 270 TIQRSARHLLSMINDILDMAKIQAGHLEIQPEPVNCAEVLNEVFDHLRPIAEQKRLELAL 329 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+ L DR+ L QI +++NA+ F+ +G I RD V + G I Sbjct: 330 IAPPTL-QIQTDRRALNQIMLNLVNNAIKFTDRGGVRIEVEPRDT-QVAIRVVDTGIGIR 387 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E +F F V++A QR G GLGL I + L GG + + S +T +P Sbjct: 388 EADLGLLFVEFGRVNSAEVRQREGTGLGLRISQRLAELLGGRIEVQSCYGEGSTFTLYLP 447 Query: 790 S 790 Sbjct: 448 Q 448 >gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 622 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 12/244 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N AL + + +K+ F+ +S+ELR+PL +I+GF+++L S L+ K ++ I Sbjct: 310 LAQANLALYEMNRLKSDFLATMSHELRTPLNSILGFSEVLAGSD--QLSEKHRRFANNIM 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S +LL ++NDILDLA +++G M++ DL + + NI +K + D Sbjct: 368 TSGRMLLTMINDILDLAKIESGKMEVRIENCSARDLCESLAAVMRDAFEAKNIDLKCVID 427 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733 +L D ++ +I S +LSNA+ F+ +G V L+ + + V++ G I PED Sbjct: 428 DQLPLIRQDPGKVKRIVSNLLSNAVKFTPEGGRVELRVFAEGRFLVIQVEDTGIGIAPED 487 Query: 734 MCKSVFNRF--VSNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +++F +F ++ R + +G GLGLSIV L G + + S + Sbjct: 488 Q-EAIFEKFRQLAQPQRDDAVLTREHQGTGLGLSIVRELCRLLEGDIKLVSQPGLGSIFT 546 Query: 786 CRIP 789 R+P Sbjct: 547 VRLP 550 >gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] Length = 894 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 14/262 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++ +VT +AE AL + A E + F+ S+ELR+PL IIGF+++++ Sbjct: 631 ALICLYDVTAYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQ 690 Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G + +++ +Y I + LL+L+NDIL L + G + + LND E++Q Sbjct: 691 TFGPVGDTRYQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLND---EIRQ 747 Query: 657 SIATKMHENNIR---IKVISDGKLGSFVADRQ--RLLQIFSKILSNAMDFSSKGSTV-IL 710 ++ +M E+ R I V+ + + D + + QI +LSNA+ F+ G V ++ Sbjct: 748 AL--RMVEDQARARSIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVV 805 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 D D + + G I E + VF F N + G GLGLSIV + + H Sbjct: 806 LGGHDGEDLWLEISDTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAH 865 Query: 769 GGHVSISSSDEGVTTINCRIPS 790 GG VS+ S TT+ +PS Sbjct: 866 GGRVSLRSRYGQGTTLRITLPS 887 >gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] Length = 683 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 338 DEQQGQIDVISQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 518 EPGVGSEFTCIIP 530 >gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 549 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 132/265 (49%), Gaps = 17/265 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++++ E L + L +A +K+ F+ ++S+ELR+PL I+G ++ LK LG+L Sbjct: 140 VDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGAL 199 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSI 658 NS Q + I S LL L++DILD++ ++AG ++L + + + +L L V Sbjct: 200 NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 259 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------- 711 TK + NI I + + D +RL Q+ +LSNA+ F+ K + L Sbjct: 260 FTK--QINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSP 317 Query: 712 --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 A FSV +NG I D +F F + ++ Q G GLGL++V+ I L Sbjct: 318 NAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIEL 377 Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792 HGG V +SS + +P +E Sbjct: 378 HGGCVEVSSQLGKGSCFTVYLPYQE 402 >gi|297569748|ref|YP_003691092.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925663|gb|ADH86473.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 496 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 3/241 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL L++ D +K++F +S+ELR+PL +I T +L G +N+ Q + + I Sbjct: 257 ALNSMCHKLQELDNLKSAFFADMSHELRTPLASIKEGTHILLDRVGGEINNHQQRILLII 316 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S S L+N VN +LDLA ++AG++ +YS L+ L+ + Q + +RI V Sbjct: 317 SQESDRLINRVNSLLDLARMEAGMVVDHYSRTSLSTLVRDALQGLQPLAEAKGVRI-VNH 375 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L D++R++Q+ ++ NA+ F+ +G T+ L A + +V++ G IPE Sbjct: 376 IAALPPVNVDQERIMQVVRNLVGNAIKFTPEGGTITLTATVRDKMLEVAVQDTGIGIPEG 435 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F +F V A + +G GLGL++V+ I HGG V +S E +T +P Sbjct: 436 DLERIFLKFQQVLPARSDKVKGSGLGLAMVKQIILAHGGKVWATSQIEKGSTFYFTLPLA 495 Query: 792 E 792 E Sbjct: 496 E 496 >gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 386 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 17/234 (7%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E++L E A+ K+ F+ +S+ELR+PL IIG+++LL+ +++ Q Sbjct: 138 EQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQE------DAEADQLPN 191 Query: 612 YISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y+ STI LL L+ND+LDL+ ++AG M+L +L+N+++ I ++ +N Sbjct: 192 YVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELYIQPQIAKN 251 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724 N R+ + LG +D Q+L QI +L+NA F+ +G T+ L+A RD GD++ F V Sbjct: 252 NNRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQG-TITLRAKRD-GDWLHFEVV 309 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G + + ++F FV R G GLGL+I S L GG + + S Sbjct: 310 DTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMVES 363 >gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 1452 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 11/244 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T +R + AL E E +A+ K+ F+ ++S+E+R+P+ IIGF+++L S L+ Sbjct: 851 ITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLES---DLDE 907 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ + I++SS +LL+++NDILD + ++A +++ + L +L+++K + Sbjct: 908 KQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQTALD 967 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDF 719 + + +G VAD R+ Q+ +L NA+ F+ +G+ V LK ++ + Sbjct: 968 KGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEKSATL 1027 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +FSV ++G I ++ + +F F RR G GLGLSI ++ GG + + S Sbjct: 1028 LFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEIDVKSK 1087 Query: 778 DEGV 781 EGV Sbjct: 1088 -EGV 1090 >gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT+LL+ S+L + +Q Y+ I S+ Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLSTIEKSA 329 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N++LD + ++AG + L L DLL + +A HE + + + D Sbjct: 330 DSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDT 389 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL Q+ + ++SNA+ F+ +G T++++A + D+ SV + G + Sbjct: 390 PL-ALRGDPLRLKQVLTNLVSNAIKFTREG-TIVMRAMVEDESTDSAQLRISVMDTGIGL 447 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ++ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 448 SDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496 >gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 463 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624 ++KN F+ +S+ELR+PLT+I+G+ + T G ++SK+ + ++ I S L LV Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +++LD + DAGI+ L S + L +LL +K+ + + I + + D L AD Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+F I+ N+ F+ KG + + ++ + ++++G IPE+ V RF Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ G GLGL+I + + LH G + I S+ T ++ +P Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462 >gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1175 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++++ E +L E + A+ K+ F+ ++S+E+R+PL IIGFTDLL + L Sbjct: 634 IDISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLAPF 693 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y++ + S+ L++L+NDILD + ++AG ++LN L +L + + + Sbjct: 694 ---QQKYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQA 750 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RD 715 H+ + + + + FV AD RL QI +L NA+ F+ +G + A + Sbjct: 751 HQKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQGEVALTVTASNTIAQEN 810 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +F F +++ G I +FN F R+ G GLGL+I +NL G + Sbjct: 811 EAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSKLK 870 Query: 774 ISS 776 ++S Sbjct: 871 VNS 873 >gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040] Length = 770 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+AL E A K+ F+ ++S+E+R+P+ +IG ++L+ ++L Q Y E Sbjct: 231 EKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETEL---TPDQELYTE 287 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+++NDIL + ++AG ++L +T L ++ +V +A K E +++ + Sbjct: 288 TIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAEKWVQLTL 347 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNG 727 D L F D R+ QI + ++ NA+ F+S+GS I G D SV + G Sbjct: 348 RYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGSVHIDVTGVARGQLMDLRISVVDTG 407 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG---VT 782 IP + +F+ F V A G GLGL+I + + G + ++SS EG V Sbjct: 408 IGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSS-EGKGSVF 466 Query: 783 TINCRIPSKE 792 TI+ +P+ + Sbjct: 467 TIDISLPTSD 476 >gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 920 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 13/241 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK EA RK +E K+ F+ +VS+E+R+P+ ++G++DLL+ + L S + ++ I+ S Sbjct: 446 EKQEAERK-NEAKSRFLANVSHEIRTPMNVVLGYSDLLQQTP--GLGSDSRRALQVINRS 502 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL L+NDILD++ ++AG ++L L LL +++ + + N ++ + ++ Sbjct: 503 GEHLLTLINDILDVSRIEAGTIQLVEQDFCLQTLLMDLEVMFSERCQHQNTQLSIKAEPD 562 Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSI- 730 DR +LLQI ++ NA+ F+ +G ++ + G F VK+ G I Sbjct: 563 THPDLRGDRGKLLQILINLVGNAVKFTEQGQILLTVNTQPMGADQFELNIIVKDTGCGIA 622 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PED K VF+ + GQR +G GLGL+I F GG + S E TT RI Sbjct: 623 PEDYDK-VFSLY-QQTESGQRLGKGTGLGLAISREFARRMGGDLVFESEIEKGTTFYLRI 680 Query: 789 P 789 P Sbjct: 681 P 681 >gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 728 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/391 (23%), Positives = 176/391 (45%), Gaps = 42/391 (10%) Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 +Y + V+ +D ++GVAV +GRI N + +L+ + + IA Sbjct: 347 RYESEVRELHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLIAPAS 406 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYSIIPL-------- 533 R D F + T G L LL+D + IP+ Sbjct: 407 RRR-----AMDYFEGVKTG---------GVLSLLNDGREIFGLARQGGTIPIFMTLGRIG 452 Query: 534 --PNAQTM----------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 A+TM + +++ + ER L + +A +K+ F+ VS+E+R Sbjct: 453 LFVTAETMPEQGVFEKYCVLLRDMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIR 512 Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL I+GFT+++ + G + N + Y++ I S T++++LVND+LDL+ ++AG M L Sbjct: 513 TPLNAILGFTEVIMDERFGPIGNERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDL 572 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 ++ + N ++ + + + + I +++ L +AD + L QI +LSNA+ Sbjct: 573 DFVAVDTNQIIADCVSLMQPQANREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVK 632 Query: 701 FSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759 F+ G V++ ++G + +++ G+ + E+ F + +G GLGL Sbjct: 633 FTEPGGQVMVATKLMEDGKTLIRIRDTGAGMSEEEIGIALEPFRQLSTSRSNQGTGLGLP 692 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + ++ + + SISS + T + PS Sbjct: 693 LTKALVEANRASFSISSKKQEGTVVEILFPS 723 >gi|144898581|emb|CAM75445.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 846 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 101/430 (23%), Positives = 188/430 (43%), Gaps = 33/430 (7%) Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420 +A+ + E TW+ ++ V + T W T V+ + GG + +F + T Sbjct: 290 TADIILETAARTTWRGDVRIVRR---TGVMIW------TEMVVTAAASEGGYLVIFFDAT 340 Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 + + E K + I+ + +G A++ + R+ N + +L E L PGT Sbjct: 341 ARREAEAKLRQARERLAAAIEAVDDGFALYDAEERLVQCNRKYIALLPQLEPWLVPGTSF 400 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDER---------KSLQGTLEL-LSDS-VLEYS 529 ++ W L + + E+ ++ QG EL L D +L + Sbjct: 401 ASLIVHS---------WKL-GLVDSELAAEQYTNLRLAQFRAGQGQCELRLRDGRILRAT 450 Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P + +VT + L E A+ KN F+ +S+ELR+PL I+G Sbjct: 451 DRRTPEGGRVSVLADVTTLNASRDHLRRALEQAEAANRSKNVFLSSMSHELRTPLNAIVG 510 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F LL+ + G+ Q + V +I + +L LV+ +L+LA +++G + L + L Sbjct: 511 FAQLLEGTPDGAFGPSQRRSVGHILRAGKLLDELVHQVLELADLESGNVHLYLTDFDLAA 570 Query: 650 LLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + + + ++ E + ++ D +G+ D QR+ ++ +LSNA+ ++ G ++ Sbjct: 571 VALDACSRLKNRLQEGQLELRQTGCDSPVGAH-GDAQRMAEVIGHLLSNAIKYNRPGGSI 629 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINL 767 L G +V+++G+ IP D+ VF F G G G+GL+I + I Sbjct: 630 DLSVDNMVGKVRLTVRDSGNGIPPDLHDQVFQPFNRLGGEGAAVEGTGIGLAICRALIQQ 689 Query: 768 HGGHVSISSS 777 GG + SS+ Sbjct: 690 MGGAIGFSST 699 >gi|254760065|ref|ZP_05212089.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] Length = 453 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL QIF I+ NA+ +S + V ++A ++ G + VK++G I Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVHIEATKNEGQAVIKVKDDGIGI 395 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG ++I S + TTI ++P Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452 >gi|251797100|ref|YP_003011831.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247544726|gb|ACT01745.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 587 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L E +K+++++ V ++S+EL++PL + GF + L+ G + K+ +Y+ Sbjct: 340 ANEQLQEDMREKQKSEQLRKELVANISHELKTPLGIVKGFAEGLQD---GVADDKRERYL 396 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + + L+ D+L+L+ + +KLN L +L+ EV S ++ +R++ Sbjct: 397 ALIVNETDRMNALIMDMLELSKFEVKAVKLNIERFSLTNLVREVASSFTQQLESKQLRLR 456 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VKNNGS 728 V DG+ FV ADR+R+ Q+ +LSNA+ + + S ++++ R GD I + V+N G Sbjct: 457 VRQDGERELFVYADRRRIEQVLLNLLSNAIRHAIEDSAIVIEMERAEGDAIKTIVENTGP 516 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 SI E+ ++++F A R + R G GLGL+IV+ + LHG ++ + GV Sbjct: 517 SIAEEDLNRIWDQFY-RAERSRDRKSGGTGLGLAIVKHILELHGSLYGAANIESGVA 572 >gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella burnetii RSA 331] gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 331] Length = 669 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 384 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 504 EPGVGSEFTCIIP 516 >gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 770 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +R +R+L +A +AD +K+ + VS+ELR+PL I G+ ++L+ ++ +L Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 428 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + Q ++ I S+ L +V DILD +++ G ++++ + + L ++ + T Sbjct: 429 EQQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 488 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ + ++SNA+ F+ G V + +RD+ + V + Sbjct: 489 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 548 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IP VF+ F ++ RRG+GLGLSIV LHGG V + S Sbjct: 549 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVES 601 >gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides sp. D22] gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides sp. D22] Length = 754 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 12/272 (4%) Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 Y+ LP + T +N+ D E L E L + E+K SF+ ++S+E+R+P Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +I+GF ++L G + ++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +L++++ + + + +K + D L DR+RL+Q+ + L+NA F+ Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNAGKFTE 664 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + D G V++ G IP + + +F+RF Q G GLGLSI + Sbjct: 665 TGYIKLGYSYLPDEGKVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722 Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790 I GG + + S + CR+ S Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754 >gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 956 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 12/249 (4%) Query: 541 TFVNVTDSVRAE---RALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + +++T+ +AE L + A R+ A+ +K+ F+ VS+ELR+PLT ++G+ + Sbjct: 542 SLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQM 601 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+T L + K ++ +E + ++ L+ D+LD++ + +G ++L+ + ++ ++ Sbjct: 602 LRTGNLPA--GKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEH 659 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +S+ +IR++ D + D QRL Q+ +LSNA+ F+ KG V + Sbjct: 660 ALESVRPAADAKHIRLQAAVD-STSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVE 718 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R + +V + G I VF+RF R G+GLGLSIV + LHGG Sbjct: 719 RRDSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGT 778 Query: 772 VSISSSDEG 780 VS S EG Sbjct: 779 VSAFSEGEG 787 >gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] Length = 1068 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 10/263 (3%) Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 S + LP + M++ +VT E L E A+ K+ F+ ++S+E+R+P+ Sbjct: 270 SPVLLPGGKVGGVMVSLDDVTLLEEKELELRRSKEEAEAANRAKSDFLANMSHEIRTPMN 329 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+GF D+L+ K L + Q +++ IS S LL+L+NDILDL+ V++G +++ Sbjct: 330 AILGFADILRRDK-KKLQTDQLKHINTISTSGQHLLDLINDILDLSKVESGRLEVEALDC 388 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704 L++ V Q + K E + +K ++D L + D R+ QI + ++ NA+ F+ + Sbjct: 389 KPVQLIHHVLQFMKVKADEKGLELKFVADTSLPEQIETDPGRVRQILTNLIGNAIKFTEQ 448 Query: 705 GS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 G TV + DN + +V + G + + SVF FV RR G GLGLSI Sbjct: 449 GGVTVHVSVVGDNPKQMKIAVVDTGIGMTQQQTDSVFEAFVQADSSITRRFGGTGLGLSI 508 Query: 761 VESFINLHGGHVSISSSDEGVTT 783 + F + GG + + +S++GV T Sbjct: 509 SQKFAHALGGDILV-TSEKGVGT 530 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 5/228 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L KN+ L+ D++K+ F+ + S+ELR+PL IIG + + G+++ Q++ + I Sbjct: 439 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIV 498 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLVNDILD + + +KL S++ + ++ V + E ++++ Sbjct: 499 VSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAIS 558 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIP 731 L AD R+ QI ++ NA+ F+ G I L ++N +V + G IP Sbjct: 559 SDLPPVEADENRIQQIMHNLVGNAIKFTEVGVITISAELIDLKNNPKMAITVSDTGIGIP 618 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ED +++F F +RR G GLGL I + + LHGG +S+ S+ Sbjct: 619 EDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSN 666 >gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis MPA1U2] gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis MPA1U2] Length = 462 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 5/237 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+T+ + L + + +N F+ +S+ELR+PLT I G+ D+L+ + ++ +Y+ I Sbjct: 222 AITKLSTDLDRLKKARNEFLSSISHELRTPLTYIKGYADILERGD--TTEREREEYLSII 279 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L +L+ ++ DLA +D + + + +LLN V + E I + V Sbjct: 280 REETAHLTSLIGNLFDLAKLDRNQFAIEQKKVSIAELLNSVALLVKPAFEEKQITLSVQC 339 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L ++V D +R+ Q+ IL NA S GS V + + +++ G IPED Sbjct: 340 SEDLQAYV-DSERIQQVLLNILDNARKHSFSGSDVRITCTEEENKIAIRIRDEGQGIPED 398 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 VF+R V + +R G GLGL+I + + HGG ++I S TT+ R+ Sbjct: 399 ELPFVFDRLYRVEKSRSRERGGSGLGLAIAKEIVESHGGQINIDSQVGEGTTVTVRL 455 >gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1204 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + E ++ ++K F+ ++S+E+R+P+ +IG DLL + LN Sbjct: 667 DITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIRTPMNGVIGMIDLLGET---PLN 723 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TK 661 ++Q YV I SS LLN++NDILDL+ ++AG M+L+ + I + +LL ++ K Sbjct: 724 TEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQTAK 783 Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719 N + V D + F +AD+ RLLQI S + SNA+ F+ GS V L + +G F Sbjct: 784 SKGNTLSYHVGPD--IPKFIIADQTRLLQIMSNLTSNALKFTENGSVKVFLTLVKKDGLF 841 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 V+++G I + +F F + N+ R G GLGL+I + L G + + Sbjct: 842 HKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIGV 901 Query: 775 SSS-DEGVT 782 S+ EG T Sbjct: 902 ESTLGEGST 910 >gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 916 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 14/237 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTIL 620 ++ A K+ F+ ++ +E+R+PL ++G + L LKT L+SKQ Y+E I +SS L Sbjct: 432 VQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE----LDSKQRGYLEKIGSSSRTL 487 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679 LN++NDILD + ++AG ++L + + L ++L + +K E I +V ++ Sbjct: 488 LNIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKK 547 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI-PEDM 734 V D RL Q+ + +++NA+ F+ KG V+ L+ + F V++ G I PE M Sbjct: 548 LVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQM 607 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K +F F RR G GLGLSI + L G + + S ++ + +P Sbjct: 608 GK-IFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVP 663 >gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 869 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 11/222 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R A+ K+ F+ ++S+E+R+P+ +IG DLL + +L+++Q +Y + I S+ LL Sbjct: 218 RDANVAKSQFLANMSHEIRTPMNGVIGMADLLLET---ALDTEQRKYAQTIIRSARSLLK 274 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + ++A +L +S L DLL E+ + + HE+ + + V + S + Sbjct: 275 IINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLI 334 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736 D R+ QI +L NA+ F+ G V LK ++ F+ FSV + G IP + Sbjct: 335 GDSGRIRQILVNLLGNAVKFTPVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVD 394 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 S+F F R+ G GLGLSI GG +++ S Sbjct: 395 SIFEPFTQADGSTARKYGGTGLGLSISNHLATRMGGRINVES 436 >gi|226227597|ref|YP_002761703.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226090788|dbj|BAH39233.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 491 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K FV +VS++L+SPL ++ T LL G L Q + + S+ L ++ Sbjct: 251 DRMKREFVSNVSHDLKSPLASLRETTSLLLDEVPGPLRDSQRRVLLLQRESADRLGVMIA 310 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 +LDL+ ++AG + L Y +I + + Q HE IRI+++ + VAD Sbjct: 311 KLLDLSRIEAG-LPLQYESIAVQSFMENAVQHAQASGHERGIRIQLLRNVAASVVLVADA 369 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ Q+ +L NA+ FS + V + A + SV + G + + + VF+RF Sbjct: 370 DRVRQLVDNLLENAVKFSPRSDVVSVDLATHGSTLMLSVADRGPGVEREDAERVFDRFYQ 429 Query: 745 NAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 A G+ RG GLGL+I ++ HGGH+++ + D G + ++P Sbjct: 430 TAA-GRAVSGRGTGLGLTICREVVHAHGGHIAVLARDGGGSVFVVKLP 476 >gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5] gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5] Length = 740 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 13/253 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD +E AL + A+ K+ F+ S+E+R+PL I+G ++LL ++L N Sbjct: 209 DVTDRAESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSNLLLDTQL---N 265 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y + + S L++LV ++LD + ++AG + L + L ++ E+ + +A + Sbjct: 266 PEQAAYAKAVKDSGEALVSLVEELLDFSKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQ 325 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718 I I D +L + D RL Q+ + SNA+ F+++G ++ + G + Sbjct: 326 ARQIEIASYVDERLPREVIGDAARLRQVLLNLASNAVKFTAEGGVALIA---EPGIWPNE 382 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F +++ G I D + +F F R G GLGL+I E + GG +++ S Sbjct: 383 ISFLIRDTGIGIAPDAQQRIFREFEQAGEEIAREYGGTGLGLAISERIVRRMGGRIALES 442 Query: 777 SDEGVTTINCRIP 789 + TT IP Sbjct: 443 AIGRGTTFEVSIP 455 >gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 646 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A+ K+ F+ +S+E+R+P+ IIG LLK +L +S+Q QYVE I+ Sbjct: 231 LKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMEL---SSEQKQYVEMIN 287 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 SS LL+++NDILD + ++AG M ++ L+DL+ ++ K H N++ V ++ Sbjct: 288 HSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVELA 347 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729 + + D + L Q+ + +L NA+ F+ +G ++ A + I F V ++G Sbjct: 348 EDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGIG 407 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ + VF RF R+ G GLGL+I ++L GG + + S Sbjct: 408 IAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKS 456 >gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25] Length = 1059 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+A K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 389 AEKA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDYV 441 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ I+ K E I ++ Sbjct: 442 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQ 501 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKN 725 V IS + D R+ QI +SNA+ F+ +G + R+ NG+ FSVK+ Sbjct: 502 VSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKD 561 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F + R+ G GLGL+I + L GG + + S Sbjct: 562 SGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLES 614 >gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 835 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +++ +T+ +AE AL + E A++ K F+ +VS+ELR+P+ I+GF +LLK K Sbjct: 318 LVSIREITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAELLKL-K 376 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L + +Y+E I SS LL+L+ND+LD+ V+AG ++LNY + LL E+ Sbjct: 377 LKAQEPPIYEYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEIINIF 436 Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714 + + + +++ V + F+ D RL QI ++ N++ F+SKG + + + Sbjct: 437 SNQASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSKGYIKVSLSMQNLY 496 Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + G V++ G I ++ + +F F+ + + R G GLGL I + GG Sbjct: 497 GNYGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEFLGGT 556 Query: 772 VSISSS-DEGVT 782 +++ S EG T Sbjct: 557 ITLDSEWGEGST 568 >gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 999 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 ++ AL + E A+ K+ F+ VS+ELR+PL I+G++ L+ + SL+ +Q +Y+ Sbjct: 515 SQTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMNRNT--SLSPQQKEYI 572 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I+ S LL+L+ND+L+++ ++AG LN ++ L LL+ ++++ K + + Sbjct: 573 EIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSIEKTFQLKASAKKLGLI 632 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNG 727 + FV D +L Q+ +L NA+ F+ G+ + ++ FSV + G Sbjct: 633 FQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTTKEAPCLKIFFSVSDTG 692 Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I E +F+ FV + A +G GLGL I FI L GG +++++ Sbjct: 693 PGIAESELSVLFDPFVQTQAGLKSMQGTGLGLPISRQFIELMGGELTVNT 742 >gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199] gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199] Length = 414 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 11/228 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K F+ ++S+ELR+PL IIG ++L+++ G++ + K ++Y I+ S LL+L+NDI Sbjct: 184 KTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATDINDSGLHLLDLINDI 243 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + V+ G + L+ I + DLL + +++IA + E ++ V G ADR+ + Sbjct: 244 LDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGSP-ILTADRRAM 302 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRF---- 742 Q+ +LSNA+ + G V + + D G V++ G IP + + + F Sbjct: 303 RQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVDE 362 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +S +G G GLGL+I + + HGG +SI SS+ T++ P Sbjct: 363 EISVTRQG---GAGLGLAITKRLVERHGGQISIDSSEGFGTSVRLSFP 407 >gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 858 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 126/223 (56%), Gaps = 15/223 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLN 622 A+ K F+ ++S+++R+P+ IIGFT L T +++++ Y++ IS SS LL+ Sbjct: 345 ANRAKREFLFNMSHDIRTPMNAIIGFTSLAATH----IDNREQVLDYLKKISTSSQHLLS 400 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681 L+ND+LD++ +++G +K+ + L DL+++V+ I + + + + + D + + Sbjct: 401 LINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSAKRLSLFIDTVDVENEDII 460 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMC 735 D RL QI ILSNA+ F+ G + ++ A NG + F +K+NG + E+ Sbjct: 461 TDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRACYEFRIKDNGIGMSEEFQ 520 Query: 736 KSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K +F F N+ +G GLG+SI ++ ++L GG ++I S Sbjct: 521 KHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIES 563 >gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 909 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 10/254 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN T + + L E + +D +K++F+ ++S+E+R+PL I+GF++L+ S+ + Sbjct: 525 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 583 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI+ T L + NE+ I K+ Sbjct: 584 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKI 641 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ ++ + DR RL Q++ L+NA+ + G + + G I+ Sbjct: 642 TNPDVEFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCTKSGYIKMGYSIEREGIRIY- 700 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V+++G IPE++ + VF RF Q G GLGL+I + I GG V +S+ + Sbjct: 701 VEDSGVGIPEELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGS 758 Query: 783 T----INCRIPSKE 792 T I C I ++E Sbjct: 759 TFWAWIPCEISTQE 772 >gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 463 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624 ++KN F+ +S+ELR+PLT+I+G+ + T G ++SK+ + ++ I S L LV Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +++LD + DAGI+ L S + L +LL +K+ + + I + + D L AD Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+F I+ N+ F+ KG + + ++ + ++++G IPE+ V RF Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ G GLGL+I + + LH G + I S+ T ++ +P Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE L +A +A++ K++F+ ++S+ELR+P+ I+G LL+ + LN Sbjct: 558 DITQQREAENILQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRKT---GLN 614 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +KQ+ Y A++ LL L+NDILD + ++AG M L ++ +L ++ +++ + Sbjct: 615 NKQADYAVKSEAATRTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSNLK 674 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGD 718 + + D L FV D RL QI + + NA+ F+ +G V +LK Sbjct: 675 IKKVEVLFDIDPTLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVT 734 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +S+F F RR G GLGL I + F+ L GG + + S Sbjct: 735 LHFGVRDTGIGIAPEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELES 794 >gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] Length = 1055 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 14/233 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+A K++A+ +A + K+SF+ ++S+E+R+PL +IG +++L + L + Q YV Sbjct: 385 AEKA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDYV 437 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I SS +LL+L+ND+LD + +++G++ ++ + + + + ++ I+ K E I ++ Sbjct: 438 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQ 497 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKN 725 V IS + D R+ QI +SNA+ F+ +G + R+ NG+ FSVK+ Sbjct: 498 VSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKD 557 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G I E K +F F + R+ G GLGL+I + L GG + + S Sbjct: 558 SGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLES 610 >gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 944 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 11/247 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++T +V+D +R L + + A + K+ F+ ++S+E+R+PL+ I+G TDLL + Sbjct: 399 AVITMKDVSDHLRLVDELEQARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLS- 457 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L Q + + + + +LL+++N +L+++ +++G + L L +N+ Sbjct: 458 --GPLTEDQRENLFLMKEAEELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALP 515 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAA 713 I E I + + +S + D RL Q+ + LSNA+ F+ G+ TV+ + Sbjct: 516 IFMGCKEKGIVLDIDVSPSIPDRLIGDGSRLTQVLTNFLSNALKFTESGTITLTVVETSR 575 Query: 714 RDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 +NG + FSVK+ G IP D ++F+ F + + + +G GLGL+I + + L Sbjct: 576 NENGKIELFFSVKDTGIGIPSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMD 635 Query: 770 GHVSISS 776 G + + S Sbjct: 636 GSIGVES 642 >gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] Length = 896 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 9/247 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D +K++F+ ++S+E+R+PL I+GF+ ++ S + Sbjct: 487 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDE 543 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y E + +++ LL L+N+ILDL+ +++GI++ + + L+ L E+ + + Sbjct: 544 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 603 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E I SD + D+ R+ Q+ S ++ NA F++ G I R G ++ F Sbjct: 604 EGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTSGH--ISYGYRREGKYVAFH 660 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G I D VF RFV + Q G GLGLSI ++ I GG++S++S T Sbjct: 661 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 718 Query: 783 TINCRIP 789 T +P Sbjct: 719 TFTFVLP 725 >gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 463 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624 ++KN F+ +S+ELR+PLT+I+G+ + T G ++SK+ + ++ I S L LV Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +++LD + DAGI+ L S + L +LL +K+ + + I + + D L AD Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+F I+ N+ F+ KG + + ++ + ++++G IPE+ V RF Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ G GLGL+I + + LH G + I S+ T ++ +P Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462 >gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 987 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 3/254 (1%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T L N+T+ ER L E EA A+ K+ F+ +S+ELR+PLT+IIG+ +LL + Sbjct: 453 TELIVRNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELLNRA 512 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 N + + I + LL ++ND+LDL+ ++AG M+++ + + L+ L+ V + Sbjct: 513 LTPIANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDT 572 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + N ++ V G V D + QI +LSNA F++ G + L+ + Sbjct: 573 VQPVIVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFTTNGQ-ITLRISGTPE 631 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+V + G I + K +F FV R+ G GLGL++ L GG +++ Sbjct: 632 MVYFAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLE 691 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 692 SALGEGSTFTLSLP 705 >gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 911 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 19/231 (8%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 ++D +K F+ VS+ELR+P+T+I GFT LL LG LN Q +++ I +++ ++ + Sbjct: 667 ESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPLNETQKEFLGIIQSNAERMIAI 726 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+LD+ ++ G ++L + + + L+ V + K+ + + + L AD Sbjct: 727 INDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAGLPLVRAD 786 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------------FSVKNNGS 728 +R QI I+SNA+ ++ +G ++ ++A D + V++ G Sbjct: 787 ARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQIDVRDTGV 846 Query: 729 SI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I PED+ + ++ RF N + + G GLGLS+V+ I L GG + + S Sbjct: 847 GIAPEDLPR-IWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVES 896 >gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] Length = 856 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 10/248 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R L + E +A + K+ F+ +S+E+R+P+ I+G T++ + + ++ ++ Sbjct: 325 QRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEVGR--RYTHNPARIENCLD 382 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS S+ LL+LVNDILD++ +++G ++L+ + L + T+ E I V Sbjct: 383 KISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARERGIEYNV 442 Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKN 725 +G L V D RL QI + +LSNAM F+ KG V + A D F V++ Sbjct: 443 YVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWIGFEVRD 502 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G I ++ +F F R+ G GLGL I + F+ + GG +S+ S + Sbjct: 503 SGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQVGSGSC 562 Query: 784 INCRIPSK 791 IP K Sbjct: 563 FRVEIPFK 570 >gi|156743019|ref|YP_001433148.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234347|gb|ABU59130.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 616 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 136/249 (54%), Gaps = 11/249 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY- 609 A++ALT A + + +K+ F+ H+S+E+R+PLT I+G+ LL+ + + N Q++ Sbjct: 360 AQQALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQLLE-AGIERQNLAQTRAD 418 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I +S LL+L N++L++A ++AG +++ + D++ +V ++ + N + Sbjct: 419 LEAIRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMDVVLDVIATVQPLIRRNRNHL 478 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVK 724 +V G D ++ QI ++SNA F++ G + A GD + F V Sbjct: 479 RVEGAEHAGVVQGDPAKVRQILLNLVSNAAKFTTGGEVAVRVA--HIGDALQPRIQFQVS 536 Query: 725 NNGSSIPEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + GS I D + +F F ++ H G+ +RGVGLGL+I + L GG +SI S+ T Sbjct: 537 DTGSGIAPDRIERLFMPFAIAEEHVGRDQRGVGLGLAISRYYCRLMGGDLSIESALGRGT 596 Query: 783 TINCRIPSK 791 T+ IP++ Sbjct: 597 TVTFWIPAR 605 >gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 744 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T RAE AL E +A K+ F+ VS+E+R+P+ IIG LL ++ L+ Sbjct: 213 DITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTR---LS 269 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q YV IS S++ LL L+ D+LD + ++AG ++L + +L+ V + +A + Sbjct: 270 SEQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAF 329 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719 I + I+ + +AD RL QI +L NA+ F+ +G TV Sbjct: 330 TKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAPKL 389 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V + G I +D +F F R+ G GLGL+I I+ G V++ S+ Sbjct: 390 AFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSA 449 Query: 778 DEGVTTINCRIP 789 T IP Sbjct: 450 PGEGATFTVYIP 461 >gi|187933272|ref|YP_001886868.1| histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187721425|gb|ACD22646.1| histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 432 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 122/214 (57%), Gaps = 6/214 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN + VS++LR+PLT+IIG+ DLLK ++ K Y+E I + L L+N++ Sbjct: 211 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEVIDERTKSLNRLINELF 269 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686 + + + +KLNYS + + L+ ++ ++ N+ IK I+D + F+ AD ++ Sbjct: 270 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVIKDITDKDI--FINADIEK 327 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745 ++++ +L+NA+ +S K S V++K +N + SV N I ED K++F RF + Sbjct: 328 IVRVLENLLTNAIKYSVKNSKVLIKLFEENNYVVVSVSNKAKDITEDDLKNIFERFYKVD 387 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 R ++ GLGLSIV+ + LH G + ++ +++ Sbjct: 388 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNED 421 >gi|168704693|ref|ZP_02736970.1| CheY-like receiver protein [Gemmata obscuriglobus UQM 2246] Length = 718 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 10/215 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +VS+ELR+PL IIG TDL + G L Q + + S+ LL LVND+L Sbjct: 226 KGEFLANVSHELRTPLNGIIGMTDL---TLGGELPPDQRDRLLLVRESAGTLLTLVNDLL 282 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 DLA ++AG + L L+ ++ + +A + + ++ I+ V D RL Sbjct: 283 DLAKIEAGRLDLAPVRFELHRVVGRALRLLAERARNKGLVLRCAIAPEVPTEAVGDPDRL 342 Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAA-RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFV 743 +QI + ++SNA+ F+ G VI ++AA R G F V + G IP D + +F F Sbjct: 343 VQILTNLVSNAIKFTENGEVVIHVRAAERSAGGLAVAFEVADTGIGIPADRLEKIFRPFE 402 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGLSIV+ + GG V+++S Sbjct: 403 QADGSTTRKYGGTGLGLSIVDRLTRMMGGRVTVAS 437 >gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 708 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 17/241 (7%) Query: 549 VRAERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +RA R +TE+ EA+R DE K+ F+ VS+E R+PL I+G DL+ + Sbjct: 176 LRAGREITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETP 235 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +Q Y+ I S LL L++ ILD + ++AG + L L+ V + + Sbjct: 236 ---LSPEQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELL 292 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A + + + I ++D + D R+ QI + NA+ F+ G V + A R Sbjct: 293 APRAQDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAVKFTEAGG-VGITAERVGE 351 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D + +V + G IPE+ +F F RR G GLGL+I ++ GG + + Sbjct: 352 DLVLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETT 411 Query: 776 S 776 S Sbjct: 412 S 412 >gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 8/273 (2%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +++S+ P+P+ + + F+ ++T RAE AL + A+ K+ F+ VS+EL Sbjct: 177 VDFSVKPVPDHEGNILFLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHEL 236 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMK 639 R+PL +IGF++ + G + ++ +Y++ I ++ L L+ DILD++ ++AG + Sbjct: 237 RTPLNAVIGFSEAILAGATGPASLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTE 296 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L+ +L+ + + K + V+ L D +R+ Q+ + NA+ Sbjct: 297 LDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNAL 356 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757 F+ G V + A +V++ G I + V+ F RR G GLG Sbjct: 357 KFTPAGGRVGISAEHVPEGLALTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLG 416 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 L+IV F+ HGG VS++S T I +P+ Sbjct: 417 LAIVRHFVEAHGGTVSLASEAGKGTRITVLLPA 449 >gi|85715389|ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697810|gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 536 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G + Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LLNL+N+ILDL+ ++AG +LN + L ++ E + + I Sbjct: 304 TYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGI 363 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I + + + D + QI ++SNA+ F+ +G + LK +G VK+N Sbjct: 364 TIHEVFEQGMPRIWGDERAARQIVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLGVKDN 423 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 GS I ED V F SN+ + +G GLGL I +S I+LHGG ++ S Sbjct: 424 GSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDLHGGTFTLKS 475 >gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] Length = 964 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 19/251 (7%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 ++VR E+A + EA R K++F+ +S+E+R+P+ I+G T LLK ++ LN++Q Sbjct: 457 EAVRLEKARKQAEEANRA----KSTFLATMSHEIRTPMNGILGTTSLLKDTQ---LNTEQ 509 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + I+ S +LL ++NDILD + ++AG + ++ ++ + E + Sbjct: 510 QRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQEKD 569 Query: 667 IRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 + + + DG LG D RL Q+ S +LSNA+ F+ G + + A + I Sbjct: 570 LSLTYHVADNVPDGSLG----DPARLYQVLSNLLSNAIKFTEVGGIQLQVTANSTQSELI 625 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV ++G IP+D S+F+ F RR G GLGL+I + I G VS+ S Sbjct: 626 FSVIDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESEL 685 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 686 HKGSTFTFTLP 696 >gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 914 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 9/247 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D +K++F+ ++S+E+R+PL I+GF+ ++ S + Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDE 561 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y E + +++ LL L+N+ILDL+ +++GI++ + + L+ L E+ + + Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E I SD + D+ R+ Q+ S ++ NA F++ G I R G ++ F Sbjct: 622 EGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTTGH--ISYGYRREGKYVAFH 678 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G I D VF RFV + Q G GLGLSI ++ I GG++S++S T Sbjct: 679 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 736 Query: 783 TINCRIP 789 T +P Sbjct: 737 TFTFVLP 743 >gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 878 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 5/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++IK+ F+ +S+ELR+PL I+G++ +L+T K + ++ +E I ++ + L+ Sbjct: 505 ANQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKFDQQTTNRA--LETIERNAKLQTQLI 562 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G + LN + L ++ +++ +I+I+ I D LG + D Sbjct: 563 EDLLDVSRILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDASLGQVMGDP 622 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +LSNA+ F+ G V ++ + V + G I D VF+ F Sbjct: 623 NRLQQVVWNLLSNAVKFTPTGGRVGIRLMEASNQIQIQVSDTGKGINPDFLPYVFDYFRQ 682 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+IV + +HGG V S +G+ T +P Sbjct: 683 ADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQAESPGDGLGATFTVEVP 730 >gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] Length = 1028 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 8/246 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D + E+ LTEK L K D++K+ F+ + S+ELR+PL II T+ + + G +N Q Sbjct: 430 DMLNKEKTLTEK---LTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEGYVNDMQ 486 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + + +S L NLVNDILD++ + ++LN T L+ V Sbjct: 487 RRNLSLVVSSGKRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFEYIKPNKQ 546 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725 +RI++ + KL + D R QI I+ NAM F+ KG + DN F+ +++ Sbjct: 547 VRIELSIEEKLPFILVDEDRFNQILFNIIGNAMKFTHKGKIAVSTERIDN--FVEIRIED 604 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I ED ++N F + + + G+GLGLSI ++ + LHGG +++ S T Sbjct: 605 TGIGISEDKLDQIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVESQINKGTI 664 Query: 784 INCRIP 789 +P Sbjct: 665 FRFTVP 670 >gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein, probable [Xanthomonas campestris pv. campestris str. B100] gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein, probable [Xanthomonas campestris pv. campestris] Length = 1046 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L + L A K+ F+ ++S+ELR+PL + + LL +K +L ++Q +Y Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I +S+ LL L+NDILDL+ ++AG ++L+ T+ ++ ++ ++ + + ++++ Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467 Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + +D + V D QRL QI +L+NA+ F+ G + + NG F V + G Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + + +F F +RR G GLGLSI GG +S+ S Sbjct: 528 IAREQNEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDS 576 >gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 889 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 123/253 (48%), Gaps = 13/253 (5%) Query: 542 FVNVTDSVRAE--------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 F N+T+ +AE R + EA +A+ +K+ F+ +S+ELR+PL I+G+ L Sbjct: 477 FRNITERKQAEQEREYLLMREQIARGEA-ERANRLKDDFLAVLSHELRTPLNPILGWATL 535 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 LK L ++ +E I ++ + + L+ D+LD++ + G + LN ++ L + E Sbjct: 536 LKKRNLEEATRRRG--IETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHTIEE 593 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +++ + +I IK +G D RL QI +L+NA+ F+ + + Sbjct: 594 ALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVVLE 653 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R N +++NG I + VF F Q G+GLGL+IV+ LHGG Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713 Query: 772 VSISSSDEGVTTI 784 V S+ EG+ I Sbjct: 714 VKAESAGEGMGAI 726 >gi|167751596|ref|ZP_02423723.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702] gi|167655404|gb|EDR99533.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702] Length = 900 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 S+ E+ EK EA L K ++++ + ++ +S++LR+PLT+I G L ++ + Sbjct: 649 SLENEKNAREKEEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLISNGNSFDEAT 708 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 ++Q I S L+NLV ++L + ++ G + L+ + +++D++ E + K E+ Sbjct: 709 KNQLYTDIYDDSMWLINLVENLLSVTRIEEGRLNLHITEDLVDDVITEALHHVNRKSVEH 768 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +I ++ D L D + ++Q+ I+ NA+ ++ KGS +++K + + S+ + Sbjct: 769 HITVRHKEDYLLAKM--DAKLMVQVVINIVDNAIKYTPKGSNILIKTWKQGDKAVISIAD 826 Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G IP++M + VF+ F S A++ RR +GLGLS+ S +N H G +++S + T Sbjct: 827 DGDGIPDEMKERVFDMFYSGANKIADSRRSLGLGLSLCRSIVNAHAGKITVSDNTPHGTV 886 Query: 784 INCRIPSKE 792 +P+ E Sbjct: 887 FTITLPAGE 895 >gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 697 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 134/261 (51%), Gaps = 11/261 (4%) Query: 533 LPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 L + Q ++ ++ + TD E A+ A A++ K++F+ +S+ELR+PL +IGF+ Sbjct: 440 LDSNQNIIEYIGIRTDITELENAMI----AALSAEKAKSTFLATMSHELRTPLNAVIGFS 495 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +L +K K +VE I+ S LLNLVN+ILD + +++G M LN I+L + + Sbjct: 496 QIL-MAKDDMPKEKIRTFVEKINISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFI 554 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 NE + + + +I I I G S AD Q L Q+ ILSNA+ FS++ S + + Sbjct: 555 NETILLVENEALKKDIEI--IKKGFFEISLSADEQLLKQVILNILSNAIKFSNQNSAINI 612 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 D + I S+ + G + ++ + +F F V +G GLGL I + + LH Sbjct: 613 SYKNDEENHIISICDEGVGLSQEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELH 672 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G++ + + + IP Sbjct: 673 NGNIEVKTQSGKGSCFYISIP 693 >gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E + EA A+ K+ F+ ++S+E+R+P+ IIG L S+ Sbjct: 256 DITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K Y+E I+AS+T LL L+ND LDLA ++ G M ++ L+D+LN++++ + + Sbjct: 315 PKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLMGQRAA 374 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718 E ++ + ++ V D RL Q+ + SNA+ FS KG S + + D Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLSFEMADSTADTFT 434 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G I + +++F F R+ G GLGLSI + L GG + + S Sbjct: 435 LRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVQLMGGKLEVES 494 >gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 385 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K D++K+ + VS+E+ +PLT ++GF + + +++ + +Q ++++ I S L Sbjct: 157 KKLDQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPA--EQQQEFLQIIFKESQRLKG 214 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++++L L + AG+ +N++ + L+ L E+ Q + I++ +D L S A Sbjct: 215 LIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATHTIKVDCPTDFPLVS--A 272 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ L Q ++SNA+ +S G TV + A +D+G I SVK+ G I + + +F+RF Sbjct: 273 DQLCLQQAMENLISNAIKYSPNGGTVTVTARQDDGQVIVSVKDEGMGISPVVQEQIFDRF 332 Query: 743 VS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + GQ+ G GLGL +V+ I+LH G V + S+EG + C Sbjct: 333 FRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWV-ESEEGQGSTFC 377 >gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 617 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 531 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ + E L + D +K++F+ ++S+E+R+PL +I+GF ++ ++ Sbjct: 283 VITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASII--AE 340 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q +Y+ + ++ +LL L++DILDLA ++AG + N + ++D +V ++ Sbjct: 341 LDDREERQ-EYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNY 399 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 K + + + + D D++RL+Q+ + ++NA+ F+S+G ++ G Sbjct: 400 DIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQILLEYHPVEGTG 458 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 FSV + G I D +VF+RFV N +G GLGLSI +S I GG + S Sbjct: 459 QIEFSVTDTGMGIAPDAVATVFDRFVKLNTF---AKGTGLGLSICKSIIEHLGGTIGAES 515 >gi|153006472|ref|YP_001380797.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030045|gb|ABS27813.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 421 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%) Query: 540 LTFVNVTDSVRA-----ERALTEKNEALRKA------DEIKNSFVQHVSYELRSPLTNII 588 L F +V + VR ER E+ AL +A D ++ F+ H ++ELRSP+ I+ Sbjct: 152 LGFSSVRELVREQGAALERTALEREAALARASDLEKVDRLRAQFLAHATHELRSPVNAIV 211 Query: 589 GFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +L++ + + G L +++ + A++T L VN+ILDL+ +AG M + + L Sbjct: 212 ALAELVRMACERGDLEHVRARLPMLLRAAAT-LRGTVNNILDLSKAEAGRMDVTVGPVNL 270 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L+ EV + + E + ++V G S +D Q++ QI ++SNA F+++G+ Sbjct: 271 AELVAEVAATARLLVGEKPVAVEVELPGA-PSITSDAQKVRQILVNLVSNAAKFTARGAI 329 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIV 761 + A G SV++ G I ED +F F V+ +H G GLGL I Sbjct: 330 RVTAVAEGEGGAAVSVRDTGCGIAEDDLPRLFVPFGQLEEAVTKSHEGP----GLGLVIT 385 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790 S L GG V ++S +T +P+ Sbjct: 386 RSLTELLGGRVEVASRRGEGSTFTVHLPA 414 >gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 1104 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 150/295 (50%), Gaps = 21/295 (7%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-------TEKNEAL 562 +R + Q + + +S+ E I + T +++T+ ++E L ++ NE L Sbjct: 813 DRNNNQKYISMAVNSIPERKI-------AIATLLDITERKQSEETLRIYSEKLSKTNEEL 865 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ D++K+ F+ ++S+ELR+P+T+I GF++L+ KLG+LN KQ + ++ I S L Sbjct: 866 RELDKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTLNEKQKEGMDSIVKSCDRLRW 925 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ +L + + ++ + + + L++ V +++ ++ E I I+ D L Sbjct: 926 LIESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNG 985 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI-FSVKNNGSSIPEDMCKS 737 D+ L Q+ ++ NA F+S G + + A D +F+ VK+NG I ++ Sbjct: 986 DKDYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPD 1045 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F F + + + G GLG+ + I H G++ + S + T ++ ++P+ Sbjct: 1046 IFKLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVKLPA 1100 >gi|221211839|ref|ZP_03584817.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221167924|gb|EEE00393.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 767 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ + E ++ +K+ + VS+ELR+PL I G+ ++L+ S +L + Q ++ Sbjct: 378 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 434 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V DILD +++ G ++L+ + + L +V + T I ++ Sbjct: 435 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFPTAASSAGIALEFE 494 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D +RL Q+ S ++SNA+ F+ G V + A D+ + +V + G I Sbjct: 495 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 554 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + VF+ F ++ RRG+GLGLSIV + LHGG V + S+ TT ++P Sbjct: 555 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614 Query: 790 S 790 + Sbjct: 615 A 615 >gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1141 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 3/253 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + +D RA ++ K L ++ + K+ F+ ++S+ELR+PL + + LL + +L Sbjct: 449 IQRSDLERANASVQLKAAELERSSQYKSDFLANMSHELRTPLNSSLILAKLLADNPHENL 508 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q +Y I +S LLNL+NDILDL+ ++AG +++ + L N ++Q Sbjct: 509 TDEQVKYARTIQSSGNDLLNLINDILDLSKIEAGHVEIQPEEASVVRLTNGLRQMFEPVA 568 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E + + D L +F D +RL QI ++SNA+ F+ KG + + + +F Sbjct: 569 SEKQLEFIISLDEHLPKTFETDPRRLEQILKNLISNAIKFTEKGKVELSVRPQGSDKIVF 628 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SV ++G I ED S+F F RR G GLGLSI + L G +++ S Sbjct: 629 SVADSGIGIAEDQLNSIFEAFHQADSTISRRFGGTGLGLSISRQLVRLLAGTIAVESKPG 688 Query: 780 GVTTINCRIPSKE 792 + + +P ++ Sbjct: 689 QGSRFSVTLPLRQ 701 >gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 916 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT+LL+ S+L + +Q Y+ I S+ Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLATIEKSA 329 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N++LD + ++AG + L L DLL + +A HE + I +I Sbjct: 330 DSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLIYRDT 389 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIP 731 + D RL Q+ + ++SNA+ F+ +G T++++A + D+ SV + G + Sbjct: 390 PLALRGDPLRLKQVLTNLVSNAIKFTREG-TIVMRAMVEDESVDSAQLRISVMDTGIGLS 448 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ++ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 DEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496 >gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1526 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 10/226 (4%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 +SF+ +S+E+R+P+ ++G T LL + LN++Q +VE I S LL L+NDILD Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLET---PLNAEQRDFVETIRISGDALLTLINDILD 906 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688 + ++AG M+L L L EV A H + + V+ ++ ++ D RL Sbjct: 907 FSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLR 966 Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QI + ++SNA+ F+ +G VI L+ + SV++ G IP +F F Sbjct: 967 QILNNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQ 1026 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 R+ G GLGL+I + L GG +S+ S + +T + + Sbjct: 1027 VDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQGSTFSVEL 1072 >gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 889 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 14/259 (5%) Query: 542 FVNVTDSVRAE--------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 F N+T+ +AE R ++EA +A+ +K+ F+ +S+ELR+PL I+G+ L Sbjct: 477 FRNITERKQAEQEREYLLMREQIARSEA-ERANRLKDDFLAVLSHELRTPLNPILGWATL 535 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 LK L ++ +E I ++ + + L+ D+LD++ + G + LN ++ L + + E Sbjct: 536 LKKRNLEEATRRRG--IETIERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEE 593 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 ++++ + NI +K + + D RL QI +L+NA+ F+ + + Sbjct: 594 ALETVSLAIEAKNIDVKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALE 653 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 R N +++NG I + VF F Q G+GLGL+IV+ LHGG Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713 Query: 772 VSISSSDEGV-TTINCRIP 789 V S+ EG+ T +P Sbjct: 714 VKAESAGEGMGATFTVNLP 732 >gi|121997145|ref|YP_001001932.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588550|gb|ABM61130.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 657 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E +A +AD + +F+ VS++LR+PL ++GFT LL+ ++ L+++Q +YVE + Sbjct: 269 ELEQARAQADRDRTTFLAAVSHDLRTPLNAVVGFTGLLQDTE---LDAEQRRYVELCRTA 325 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL LV+ +L L+ ++AG M+L + L L + + E + + + D Sbjct: 326 SQTLLGLVDTLLSLSRLEAGEMQLECAPFDLRAFLEDEVGLLEALAAEKGLSLSLHIDPA 385 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 + +V D R Q+ + +NA+ F+ +GS VI ++ A +G +V++ G I E Sbjct: 386 VPGWVEGDAVRFGQVLYNLANNAIKFTEQGSVVITVEPADGDGLLRVAVRDTGPGISEAD 445 Query: 735 CKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSK 791 K +F F +R+ G GLGL+I + + L GG + + S+ +T R+P+ Sbjct: 446 QKRIFRAFTQGGDVFRRQEGSGLGLTICKELVRLMGGDLGLKSAPGAGSTFQFTARLPAV 505 Query: 792 E 792 E Sbjct: 506 E 506 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 152/326 (46%), Gaps = 43/326 (13%) Query: 484 AATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT- 541 A+ R DG +++ I S D R G +++D I PL AQ L Sbjct: 297 ASQYERRLARKDGSEVWTMISASPQFDARGEFNGVFAMITD------ITPLRIAQANLKT 350 Query: 542 --------FVNVTDSV---------------RAERALTEKNEALRKADEIKNSFVQHVSY 578 V TD + + E+ + + EA KA K+ F+ ++S+ Sbjct: 351 AYDELEKRVVERTDELNKTNRLLTSEIHIRKQTEKEIIKAKEAAEKATLAKSEFLANMSH 410 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E+R+P+ IIG T L+K ++ L++ Q Y+ I S+ LL ++ND+LDL+ ++AG++ Sbjct: 411 EIRTPMNAIIGMTHLIKMTE---LSATQRDYLNKIDISAKSLLGIINDVLDLSKIEAGML 467 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILS 696 + L +L ++ ++ + +E + +IS GK + D R+ QI + + Sbjct: 468 TVESVGFKLEQVLEQLTTIVSPRANEKKLEF-LISVGKDVPPAIQGDPMRMAQILINLCN 526 Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 NA+ F+ +GS V+ L+ D F+VK++G I + +F F R+ Sbjct: 527 NAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIKPGKIQELFQPFTQADASTTRK 586 Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776 G GLGLS+ + ++L GG + S Sbjct: 587 YGGTGLGLSLCKQLVDLMGGEIGAES 612 >gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 545 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ + Sbjct: 255 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVAV 312 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y +Y I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + Sbjct: 313 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASNR 372 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + + AD + QI +LSN++ F+ +G + LK +G SVK Sbjct: 373 GITIHEVFEQGMPRIWADERAARQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVK 432 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS I ED V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 433 DTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 486 >gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1666 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 22/253 (8%) Query: 544 NVTDSVRAERALTE-KNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 ++ + V+A A E N+AL++ A+ K+ F+ +S+ELR+PL I+G+T +L+ Sbjct: 1161 HLEERVKARTAALELTNQALKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQ 1220 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + +L +Q Q +E I LL+L+NDILDLA ++A M L +T+ L L+E+ Sbjct: 1221 RDQ--TLTEQQQQSLEIIYKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIA 1278 Query: 656 QSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTV----I 709 I + + +D +L + + D +RL QI +LSNA+ F+ G + + Sbjct: 1279 VIIHPRATGKGLTWTYFTDPQLSNLFCLVDSKRLRQILLNLLSNAVKFTDTGEVILEVEV 1338 Query: 710 LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESF 764 + ++ ++ F VK+ G IP + +S+F F + A++ Q G GLGL+I + Sbjct: 1339 ISPFTNSNPYVTLRFKVKDTGIGIPSEKIESLFQPFEQGTEAYK-QSEGTGLGLTITQKL 1397 Query: 765 INLHGGHVSISSS 777 + + G + + S Sbjct: 1398 LEMMGAKLEVESQ 1410 >gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1172 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +L ++VT+ RA E A+ K+ F+ +S+E+R+P+ I+GF ++L Sbjct: 400 VLLNAIDVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQ 459 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L+S+Q + V+ IS LL+L+N+ILDL+ +++G M L + L +++ +V + Sbjct: 460 ---ALSSEQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITT 516 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + K + + I+V D F+ D R+ QI S +L NA+ F+ +GS +I + R Sbjct: 517 VRQKAQDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGSVIISVSKRQE 576 Query: 716 ---NGDFIF----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D IF V + G I +D + +F+ F ++ G GLGL+I S ++ Sbjct: 577 ECHERDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLD 636 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 L GG + ++S+ T +P K Sbjct: 637 LMGGEIWVNSNKPQGTIFTFCLPVK 661 >gi|218232960|ref|YP_002366695.1| sensor histidine kinase [Bacillus cereus B4264] gi|218160917|gb|ACK60909.1| sensor histidine kinase [Bacillus cereus B4264] Length = 458 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 237 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 294 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 295 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 352 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 353 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 412 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 413 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 457 >gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740] gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes] Length = 1263 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 11/232 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A+ K+ F+ ++S+E+R+PL +I+GF ++L+ S LG K+ +Y E I Sbjct: 785 LLKAKELAESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI---KEQRYAENIL 841 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S +L++++NDILDL+ V+AG M + + L L+ EV K E N+ + ++ D Sbjct: 842 KSGKVLMDIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLVID 901 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728 +L V D R+ QI ++ NA+ F+ KG I + + + + +K++G Sbjct: 902 ERLPKILVIDGTRVRQILFNLVGNAIKFTHKGYVRISVERGERESEGGIELVLRIKDSGI 961 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 I + +F F + + R G GLGL+I + L G +S+ S + Sbjct: 962 GIAQADSNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQE 1013 >gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase [Methanococcus voltae A3] Length = 654 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 133/239 (55%), Gaps = 4/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L++ + L++ D +K+ + S+ELR+PLT++ G+ +L+ +G +N QS+ + Sbjct: 393 QELSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEVNEAQSKCLSI 452 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L L++ +LDL+ ++ G +++ + + ++EV +++ E NIR+ + Sbjct: 453 ANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRL--V 510 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D + S D+ RL+Q+ + ++ NA+ F+ + L A D G+ V+++G+ IPE Sbjct: 511 KDVQNLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGAYEDEGNIHLIVQDHGAGIPE 570 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+RF V ++ + + G GLGL++ +S + H G + + S +T + +P Sbjct: 571 KDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVILP 629 >gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329] Length = 632 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563 L L+LLS +V ++S P+ T+ L SV+ R + EA R Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234 Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q ++VE I SS Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ +++DILD + V+AG ++L T LL++V K + N+++ D KL + Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734 V D RL Q+ + +LSNA+ F+ +G +L + + + I F V ++G I ++ Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++VF RF R+ G GLGL+I +++ GG + ++S Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 >gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus MO6-24/O] gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus MO6-24/O] Length = 928 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 N++NDILD + ++AG + L + L EV AT HE + I + D ++ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A + D+ D F VK+ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|296502595|ref|YP_003664295.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296323647|gb|ADH06575.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 452 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 288 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 289 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 346 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 347 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 406 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 407 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 451 >gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 1092 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 130/242 (53%), Gaps = 13/242 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++EA AD K+ F+ ++S+E+R+P+ ++G +LL + L+++Q +++ I Sbjct: 538 LLARSEA---ADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---DLDARQKTFIDIIV 591 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD + +DAG M+L + + + +V +++ E +I + V + Sbjct: 592 KSGNALLTIINDILDFSKIDAGQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRAT 651 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGSS 729 + + V D R QI + +L NA+ F+ +G ++ ++ DNG+ + + V++ G Sbjct: 652 PAVPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLG 711 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I ++ S+F +F RR G GLGL+I ++L GG++ + S +T Sbjct: 712 ISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVH 771 Query: 788 IP 789 +P Sbjct: 772 LP 773 >gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1058 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A++ K+ F+ ++S+ELR+PL I+GF+ L+ S +L + + ++ I+ Sbjct: 588 LAEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRST--TLPPEHQENIQIIN 645 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+N+IL LA ++AG LN S L LLNE+++ + N+ + D Sbjct: 646 RSGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFERD 705 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIP 731 + ++ D +L ++ +LSNA+ F+ +G + + ++ +F+VK+ G I Sbjct: 706 KTIPQYIRTDEVKLREVLINLLSNAIKFTPRGDILVDVQTLSQKPITLLFTVKDTGVGIT 765 Query: 732 EDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F+ F + + + + G GLGL+I F+ L GG +++ S Sbjct: 766 PEELDILFDAFSQTQSGKNSQEGTGLGLAISRQFVELMGGELTVDS 811 >gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016] gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 928 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 N++NDILD + ++AG + L + L EV AT HE + I + D ++ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A + D+ D F VK+ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034] Length = 632 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563 L L+LLS +V ++S P+ T+ L SV+ R + EA R Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234 Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q ++VE I SS Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ +++DILD + V+AG ++L T LL++V K + N+++ D KL + Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734 V D RL Q+ + +LSNA+ F+ +G +L + + + I F V ++G I ++ Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++VF RF R+ G GLGL+I +++ GG + ++S Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 >gi|227538847|ref|ZP_03968896.1| possible sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241356|gb|EEI91371.1| possible sensor histidine kinase/response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 586 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 131/245 (53%), Gaps = 9/245 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +++ L + A + K+ F+ +S+E+R+PL IIG DLLKT+KL + Q + Sbjct: 199 SQKELIISKQLAEDATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTKL---DQNQQLLI 255 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + ASS IL +LV D+LD++ ++ ++NY++ L+ L +K I + ++ + Sbjct: 256 ENLQASSHILSDLVTDLLDISRIETNKFEVNYTSFDLHQSLISLKHVIDPMLKSKDLTLN 315 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVKNN 726 + +++ + D R QI +LSNA+ F+ KGS T+ + + ++ VK+ Sbjct: 316 IRMAENTPAELITDEARFKQILLNLLSNAIKFTLKGSITLYISYILLHDKYVLECKVKDT 375 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I ++ +F++F + +G+GLGL+I + +++ GGH+ + S TT Sbjct: 376 GIGIKKENISRLFDQFSQIEEPQIPDNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTF 435 Query: 785 NCRIP 789 R+P Sbjct: 436 TFRLP 440 >gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 767 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N T + + L E E +D +K++F+ ++S+E+R+PL I+GF++L+ T Sbjct: 524 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 580 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ L + NE+ +I KM Sbjct: 581 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 640 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 N+ +++ + DR RL Q++ L+NA+ + G + G I+ Sbjct: 641 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIERKGLRIY- 699 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP+D+ VF RF Q G GLGL+I + + GG V +S Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 751 >gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp. R2A62] gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp. R2A62] Length = 835 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +++AL +++K F+ +S+E+R+PL ++G LL+ + L ++ Q +YV Y+ S Sbjct: 344 RDKAL-AGEKLKTDFLATMSHEIRTPLNGLLGNMSLLRDTHL---DTAQDRYVGYMETSG 399 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDG 675 +L+N ++D+LD+ DAG + + ++ LL ++ QS A HE ++ K +S+ Sbjct: 400 RLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDIVDNQSSAASKHETSLTWKWLSE- 458 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPE 732 + ++D RL + ++ NA+ F+ +G TV DN +K+ G + E Sbjct: 459 ETSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEEIKEHDNPTLQIQIKDTGPGMTE 518 Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 D+ KSVF+ FV+ R G GLGLSI + F+N GG + + S Sbjct: 519 DLVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNALGGDIRVES 564 >gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 939 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D++K++F+ ++S+E+R+PL I+GF+ L+ S+ Sbjct: 513 DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 569 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + E + A++ LL L+N+ILDL+ +++GI++ + I +N L EV + + Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +++I + V D+ R+ Q+FS ++ NA F+ GS N +F Sbjct: 630 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 685 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G+ I + VF RF + Q G GLGLSI ++ + GG +S+SS Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 743 Query: 782 TTINCRIP 789 TT +P Sbjct: 744 TTFTFTLP 751 >gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632 >gi|255008569|ref|ZP_05280695.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146297|ref|ZP_07808490.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135064|gb|EFR52424.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 639 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 9/236 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R++ L E + +++ +K++F+ ++S+E+R+PL I+GF+D+L + GS Q Sbjct: 399 DLERSQADLYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y I ++S +LL L+NDILDL+ ++A + L + L + S+ E+ Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEADKVTLTPEDCDVVQLCRQALSSVEMSRRESG 516 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 R + + + SFV D QRL Q+ +L+NA F+ G+ T+ + ++ +F+V Sbjct: 517 NRF--VFETQTESFVLQVDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + G IP++ K VF RF Q G GLGLSI + ++ GG + I E Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGSIWIDPDYE 628 >gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 962 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 15/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + EK L + + K+ F+ ++S+ELR+PL +++ + LL +K +L KQ +Y Sbjct: 262 QARELVEEKANELELSSKYKSEFLSNMSHELRTPLNSLLILSRLLYENKDENLTDKQIEY 321 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + A+ T LL L+N++LDL+ ++AG M LN + L + V+Q E + + Sbjct: 322 SRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEMNLKGFTSYVEQHFLHIAEEKGLYL 381 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 + +++ S DRQR+ QI +LSNAM F++ G I G Sbjct: 382 HIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTSGGITIQIDRPTAGIDLSRSTLNPQ 441 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 SV + G IPE+ + +F F R+ G GLGLSI L GG + + Sbjct: 442 HAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSRKYGGTGLGLSITRELAKLLGGEIQL 501 Query: 775 SSSDEGVTTINCRIP 789 S + +T +P Sbjct: 502 RSEEGKGSTFTLYLP 516 >gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472] gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC 12472] Length = 664 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE +A A+ K+ F+ +S+E+R+PL +IG TDLL+ ++ L+ +Q YV + Sbjct: 15 LTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTR---LDDRQRHYVSVVH 71 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL +++DILD + ++AG +L+ LN L+ E+ + +A + + + Sbjct: 72 RSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGKGLELMCALP 131 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSI 730 V D +RL Q+ + ++ NA+ F+ G + + +A + SVK+ G I Sbjct: 132 LMPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESDAGVTCRISVKDTGIGI 191 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 D K +F F RR G GLGL I + + + GG + + S Sbjct: 192 APDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIELES 239 >gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 594 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 10/250 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V +V R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + G+ + Sbjct: 346 VRGAVAVIRDMTEE----RRHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAGT-DQ 400 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ + + I S + LVN++LDLA ++AG + L+Y I + + + E Sbjct: 401 EKKELAKIIYDESLRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKE 460 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFS 722 + + I G G + D RL Q+ + +LSNA+ + G TV L +NG I Sbjct: 461 QQLTLDFIYRGDEGKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENGVKI-D 519 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G+ IPE+ VF RF A R G GLGL+IV++ ++ H G +S+ S + Sbjct: 520 VTDTGTGIPEEDLPYVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQE 579 Query: 781 VTTINCRIPS 790 TT P+ Sbjct: 580 GTTFTAFFPN 589 >gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7] Length = 1350 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + L + A+ K+ F+ ++S+E+R+P+ +IG + LL + +LN Sbjct: 614 DITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT---ALN 670 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q + + + LL ++NDILD+A ++AG M+L ++ LL+E+ + + Sbjct: 671 DQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQ 730 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718 E +R V L G + D R+ QI ++ NA+ F++ G V + D+ D Sbjct: 731 EKGLRFSVSVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSREDDHADTCW 790 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G IP + +F F RR G GLGLS+V GG + + S Sbjct: 791 LRFSVQDTGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVES 850 >gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 549 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 120/215 (55%), Gaps = 7/215 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ ++S+ELR+PL I+G+T +L K L KQ + ++ I S LL L+ Sbjct: 65 ANKAKSEFLANMSHELRTPLNGILGYTQILNHDK--RLTDKQKEGIQIIHRSGEHLLILI 122 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILDL+ ++AG ++++ L L ++ + + + +I + + L V D Sbjct: 123 NDILDLSKIEAGKLEMSPIDFGLPIFLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRTD 182 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 ++RL Q+ +LSNA+ F+ KG V K DNG F V++ G +P D +S+F F Sbjct: 183 KKRLRQVLLNLLSNAIKFTDKGH-VNFKVIYDNGRARFEVEDTGCGVPADQLESIFLPFQ 241 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + H+ Q G GLGL+I + + + GG + + + Sbjct: 242 QMGDQHQ-QLEGTGLGLAISKQLVTMMGGQLHVET 275 >gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 939 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 12/246 (4%) Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 N Q L VN +T+ E L E E AD +K++F+ ++S+E+R+PL I+GF+ Sbjct: 687 NGQIELIGVNYDITELKETEAMLIEAKEKAEAADRLKSAFLANMSHEIRTPLNAIVGFSS 746 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL ++ ++ QY+ + ++ +LL L++DILDL+ ++AG + +N L Sbjct: 747 LLGETENV---EERKQYIAIVEENNDLLLQLISDILDLSKIEAGTFDFTKRALDVNLLCE 803 Query: 653 EVKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++ +++ K+ ++++ D L V+DR RL Q+ + ++NA+ F+S GS + Sbjct: 804 DIVRTMRMKVKPG---VELLFDSHLPECQIVSDRNRLNQVLANFVNNAVKFTSAGSIRVG 860 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770 D F V + G I + VF+RFV G GLGLSI +S I GG Sbjct: 861 YEPLDENRLRFYVADTGIGIEPEKQVQVFDRFVKLDTFVP--GTGLGLSISKSIIEQLGG 918 Query: 771 HVSISS 776 + + S Sbjct: 919 TIGVDS 924 >gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 918 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1121 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 15/239 (6%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR+PLT + ++T+ L +KQ +S+ T Sbjct: 878 NSARKELEQRKDDFISMASHELRNPLTAL-----KMQTTLLHRQLAKQGIQAPALSSMKT 932 Query: 619 I---LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L+ LV ++LD++ + AG ++ T+ L+ LL E IA M + N ++ G Sbjct: 933 QINKLIRLVEELLDVSKIQAGRLEYRQETVDLDALLRE----IANTMQQTNPSHTIVMRG 988 Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + S +ADR RL Q+F+ +LSNA+ +S TV + + V+++G IP + Sbjct: 989 AVQTSLLADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSATEDAVTIRVRDHGLGIPREQ 1048 Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF A QR G+G+GL IV + HGG +++ S +T +P + Sbjct: 1049 RDKIFERFYRVAGSTQRAIPGLGMGLYIVAEIVKRHGGTITVESDVGNGSTFTVTLPKR 1107 >gi|228958287|ref|ZP_04120013.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801368|gb|EEM48259.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 443 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442 >gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 985 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 20/266 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++VT R E L E EA A+ K++F+ +S+E+R+PL IIG +L+ + Sbjct: 457 LCTLLDVTARKRTELKLREAREAAEDANRAKSTFLATMSHEIRTPLNAIIGNLELMARA- 515 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK--- 655 SL + + ++ I++SS LL ++ND+LDL+ ++ M L L DLL +V Sbjct: 516 --SLPPSERRRLKTIASSSDALLRVINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIF 573 Query: 656 QSIATKMHEN-NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712 + +A H + R+ ++DG LG D RL Q+ S ++ NA+ F+ +G I + Sbjct: 574 RPVADAKHLTLDCRMAADLADGYLG----DPTRLRQLVSNLVGNAIKFTKRGGVTIDARV 629 Query: 713 ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 A D +V++ G IPED ++F+ ++ RR G GLGL + L Sbjct: 630 ATDAAGARRVAIAVRDTGIGIPEDALPNLFDVYMQADPSIYRRFGGTGLGLPLCGRIARL 689 Query: 768 HGGHVSISSS-DEGVTTINCRIPSKE 792 G +++ S DEG TT +P E Sbjct: 690 MHGELTVESRVDEG-TTFVAALPLPE 714 >gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6] gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus CMCP6] Length = 928 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 N++NDILD + ++AG + L + L EV AT HE + I + D ++ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V ++A + D+ D F VK+ G I E Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSIDLQFMVKDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 657 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N T + + L E E +D +K++F+ ++S+E+R+PL I+GF++L+ T Sbjct: 414 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 470 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ L + NE+ +I KM Sbjct: 471 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 530 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 N+ +++ + DR RL Q++ L+NA+ + G + G I+ Sbjct: 531 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIEREGLRIY- 589 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP+D+ VF RF Q G GLGL+I + + GG V +S Sbjct: 590 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 641 >gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 810 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 14/239 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E+ L + + D +K++F+ ++S+E+R+PL I+GF+ LL ++ Sbjct: 566 DITTLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETE----- 620 Query: 604 SKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 SK+ Y++ + ++ +LL L++DILDLA ++AG Y+ + +N++ +E+ +S K Sbjct: 621 SKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGTFNFVYADLDVNEVCSEIIKSTGMK 680 Query: 662 MHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + N IK++ + ++ D+ R +Q+ + ++NA+ F+ +G+ + + Sbjct: 681 VKGN---IKLLFEKQIPECHIYTDKNRFMQVITNFINNALKFTHEGTIALGYEQISSQKI 737 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G IP SVF RFV + Q G GLGLSI +S I G + + S++ Sbjct: 738 RFYVRDTGVGIPASKINSVFERFVKLNNFVQ--GTGLGLSICKSIITQMEGEIGVDSTE 794 >gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 2095 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 20/260 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L++KQ ++ Sbjct: 1404 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTDNPDGNLSAKQVEF 1463 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + ++ I+ +LL V + + N+ Sbjct: 1464 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRNLSF 1523 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719 K+ D L S V D +RL Q+ +LSNA F+++G V LK G + Sbjct: 1524 KIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTAEGE-VRLKVGGALGGWGTDHPVLNS 1582 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 F V + G IP + K +F F A G R G GLGL+I +L GG Sbjct: 1583 APAVISFEVSDTGIGIPLEKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELASLLGGE 1641 Query: 772 VSISSSDEGVTTINCRIPSK 791 + + S+ ++ +P K Sbjct: 1642 IHLRSAPGKGSSFTLYLPLK 1661 >gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 767 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N T + + L E E +D +K++F+ ++S+E+R+PL I+GF++L+ T Sbjct: 524 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 580 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ L + NE+ +I KM Sbjct: 581 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 640 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 N+ +++ + DR RL Q++ L+NA+ + G + G I+ Sbjct: 641 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIEREGLRIY- 699 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP+D+ VF RF Q G GLGL+I + + GG V +S Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 751 >gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 632 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563 L L+LLS +V ++S P+ T+ L SV+ R + EA R Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234 Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q ++VE I SS Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ +++DILD + V+AG ++L T LL++V K + N+++ D KL + Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734 V D RL Q+ + +LSNA+ F+ +G +L + + + I F V ++G I ++ Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++VF RF R+ G GLGL+I +++ GG + ++S Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 >gi|229144617|ref|ZP_04273019.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24] gi|228638857|gb|EEK95285.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24] Length = 443 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442 >gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 621 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L E +AD +K++F+ ++S+E+R+PL I+GF+ LL+ + Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y I ++ +LL L++DILDL+ ++AG + + L NE+ QS+ + Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 E + I + + +F +D+ RL Q+ ++NA+ F+S+GS VI R NG+ + FS Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +++F RFV G GLGL I +S + GG + + S Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606 >gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 904 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L E A A++ K+ F+ ++S+ELR+PL I+GF+ LL S+ +L +Q Q + Sbjct: 389 KDLREAKNAAETANQAKSVFLANMSHELRTPLNAILGFSQLL--SRDQNLTLEQKQTLRT 446 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I++S LLNL+ND+L+++ ++AG + LN L LL + + + K +R+ Sbjct: 447 INSSGAHLLNLINDVLEMSKIEAGKVDLNQGQFDLRALLESLFEMFSLKAEARQLRLDFE 506 Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS------------------------- 706 L + V+D RL Q+ +L NA+ F+ GS Sbjct: 507 LPPDLPQYIVSDASRLRQVLINVLGNAIKFTEVGSVTLAISTLPLQSVSEQLSDISSENE 566 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESF 764 + L+ +N + +V + G I +D ++FN F + A R G GLGL+I F Sbjct: 567 AITLEPTLENDTLLQITVTDTGVGIADDELPNLFNLFTQACAGRQSFEGTGLGLAISRQF 626 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791 + L G + +SS + T + +IP K Sbjct: 627 VQLMQGDIHLSSKEGQGTKVQIQIPVK 653 >gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 617 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 147/279 (52%), Gaps = 15/279 (5%) Query: 508 DDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AERALTEKNEAL 562 D E+K + T ELL + ++LE + +LT N+ + + A+R E+++ + Sbjct: 54 DLEQKVKERTAELLEARNILEQRV--EERTAELLTAKNLAEQAQKMADADRVKAEQSQKI 111 Query: 563 -RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTIL 620 +A+ K+ F+ ++S+ELR+PL IIG++++L+ LN + ++ I + L Sbjct: 112 AEEANYAKSHFLANMSHELRTPLNAIIGYSEMLQEDA-EDLNQESCVLDLKKIQGAGKHL 170 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+N +LDL+ ++AG M+L T LN +LNE+ +I + + +K + D LG Sbjct: 171 LGLINTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLGQM 230 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739 D +L Q+ +LSN F+ +G I R +G++I F + +NG + E+ K +F Sbjct: 231 HTDLTKLRQMLLNLLSNTAKFTEQGQ--IRMEVRRDGEWINFCIADNGIGMTEEQQKKIF 288 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I + F + GG + + S Sbjct: 289 QPFTQADASTTRRYGGTGLGLAITKQFSEMMGGVIWVES 327 >gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 646 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A+ K+ F+ +S+E+R+P+ IIG LLK L+S+Q QYVE I+ Sbjct: 231 LKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEM---DLSSEQKQYVEMIN 287 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 SS LL+++NDILD + ++AG M ++ L+DL+ ++ K H N++ V ++ Sbjct: 288 HSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVELA 347 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729 + + D + L Q+ + +L NA+ F+ +G ++ A + I F V ++G Sbjct: 348 EDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGIG 407 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ + VF RF R+ G GLGL+I ++L GG + + S Sbjct: 408 IAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKS 456 >gi|330501197|ref|YP_004378066.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328915483|gb|AEB56314.1| multi-sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 749 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 9/227 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609 R + + EA+R DE+ V VS++LR+P+T I +++ S G S++ + Sbjct: 509 RQVLREQEAVRARDEL----VAVVSHDLRNPMTVISMLCSMMQKTFSSDGPHTSRRIATA 564 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ + L+ D+LD + +DAG + + + + E + +A + +I I Sbjct: 565 LDTMQQAAGRMNTLLEDLLDTSKIDAGRYTITPQKLDVGHMFEEAQSLLAPLALDKDISI 624 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D L AD +RL Q+ S ++ NA+ F+ + TV ++A GD +FSV+++G Sbjct: 625 SFEADPDL-RIHADPERLFQVLSNLIGNAIKFTPRRGTVGVRAKSVGGDIVFSVRDSGEG 683 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ VF+R+ + A G G GLGL I + + HGGH+ + S Sbjct: 684 IPEEHLPHVFDRYWT-AKDGNPTGTGLGLYITQGIVEAHGGHIVVES 729 >gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] Length = 1127 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 5/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + KN+ L AD++K+ F+ S+ELR+PL ++G + L T G +++ +E I Sbjct: 440 IQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIII 499 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLVND+LD + G + +N L+ + V + + IRI D Sbjct: 500 NSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVD 559 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 L S AD QRL Q+ ++ NA+ ++S+G VI + D F+ V + G IP D Sbjct: 560 KSLPSVYADEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPAD 617 Query: 734 MCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F + H R+G GLGLSI I L GG + +SS T + +P Sbjct: 618 ELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 675 >gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 533 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 11/234 (4%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G+ + Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVAV 301 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y +Y I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + Sbjct: 302 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSR 361 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724 I I + + + D + QI +LSNA+ F+ +G + LK +G SVK Sbjct: 362 GITIHEVFEQGMPRIWGDERAARQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVK 421 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + GS I ED V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 422 DTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475 >gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1560 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 38/336 (11%) Query: 484 AATCSRYYNESDG-WDLFAAIIT--SFDDER--KSLQG------TLELLSDSVLEYSIIP 532 T +SDG + L AA IT DD++ SLQ +L L + V + I Sbjct: 1227 GTTVQELEGKSDGDFHLVAAEITLAGTDDQQVMNSLQSLLIPEQSLTLANGEVRYFQTIK 1286 Query: 533 LP------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSP 583 P NA +L TD ++ E +AL K E+ K+ F+ VS+E R+P Sbjct: 1287 TPLVSPDGNAHYILGVA--TDITERKQIQQEIEKALAKEKELHKLKSQFIDIVSHEFRTP 1344 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 LT+I+G+ +LL+ K+ +++ I + L +L+ D+L ++ ++G KL Y+ Sbjct: 1345 LTSILGYAELLERHSDKLTTEKKIKHLHNIQMAGQRLSDLIQDVLCISRAESG--KLLYN 1402 Query: 644 TIVLN------DLLNEVK----QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 ++N DL+ E++ Q + N+R +D D + L I + Sbjct: 1403 PTLINVADFCQDLIEEIQIGIGQGYEILFKQPNLRPHSSTD----LIYLDEKLLRHILTN 1458 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 +LSN + +S GS V L +N IF +++ G IP + +F+ F ++ G G Sbjct: 1459 LLSNGIKYSPIGSRVELSLQYENQQVIFEIRDQGIGIPLEDHPKLFDSFYRASNVGNIPG 1518 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+IV+ ++NLHGG + +S+ + TT +P Sbjct: 1519 TGLGLNIVQKYVNLHGGTIDFTSTVKVGTTFKVSLP 1554 >gi|254520520|ref|ZP_05132576.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA] gi|226914269|gb|EEH99470.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA] Length = 473 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 124/215 (57%), Gaps = 5/215 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+L K D ++ F+ +VS+ELRSP+T+I GF + + K++ Y+ ++ + Sbjct: 241 ESLEKVDNVRREFISNVSHELRSPITSIKGFITGIVDGVIPK--DKENYYLNIVNDEVSR 298 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LD++T+++G KL + + +N+++ ++ K++E IR++VI + Sbjct: 299 LSRLVNDLLDISTMESGKFKLKVAKLDINEIITLCTLNLEGKINEKKIRVEVIFNDSYEY 358 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSV 738 + DR R++Q+ + +L NA+ + +G + ++ GDF++ S+ N+G +IP++ + Sbjct: 359 CIGDRDRIIQVVTNLLENAIKYGDEGGRIQVETYA-KGDFVYVSIFNSGPNIPKEDINKI 417 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 + RF + R + GLGLSIV ++ H + Sbjct: 418 WERFYKMDKARTNKISTGLGLSIVRLILSQHNQDI 452 >gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1005 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 13/246 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ E A+ K+ F+ ++S+ELR+PL ++G LL+ G L+ Q++ V Sbjct: 620 LSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEA---GDLDRDQNELVHIAL 676 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL +++DILDL+ ++AG M+L + + + +V A +R++ D Sbjct: 677 DSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCD 736 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730 D RL QI +L NAM F+ +G+ + ++ ++ +FSV + G I Sbjct: 737 ELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGI 796 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC- 786 P D S+F F RR G GLGL IV ++L GG +++ S+ EG C Sbjct: 797 PHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCL 856 Query: 787 --RIPS 790 R+PS Sbjct: 857 PFRLPS 862 >gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 921 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D++K++F+ ++S+E+R+PL I+GF+ L+ S+ Sbjct: 513 DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 569 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + E + A++ LL L+N+ILDL+ +++GI++ + I +N L EV + + Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +++I + V D+ R+ Q+FS ++ NA F+ GS N +F Sbjct: 630 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 685 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G+ I + VF RF + Q G GLGLSI ++ + GG +S+SS Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 743 Query: 782 TTINCRIP 789 TT +P Sbjct: 744 TTFTFTLP 751 >gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] Length = 558 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++ ++Q ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL E+K + K + I ++V + S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQV-DVLRHVS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G TV ++ D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G V++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 552 >gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 954 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 26/295 (8%) Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDSVRAERA 554 W +IT F E+K +QG + PN + V++++ E Sbjct: 508 WSWEGKLITPFG-EKKWIQGISQPEQQ----------PNGDILWDGVVVDISERKLMEIK 556 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + L +A +K+ F+ ++S+ELR+PL I+G ++ LK LG+LN Q + I Sbjct: 557 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTLNPNQHHAIAMIE 616 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S LL L++DILDL+ ++AG ++L + + + +L N + I I+ I Sbjct: 617 KSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIP 676 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---------AARDNGDFIFSV 723 +F+ D +RL Q+ +LSNA+ F+ K + L A FSV Sbjct: 677 QQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSV 736 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +NG I D +F F + ++ Q G GLGL++V+ I LHGG V +SS Sbjct: 737 VDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSS 791 >gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 931 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 18/247 (7%) Query: 543 VNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + +T +A A ++ EA ++A+E K++F+ ++S+E+R+P+ I+G +L+ + Sbjct: 245 IEITKVNKALEAEIDRAEAFARRAKEAEEAKSNFLANMSHEIRTPMNGIVGMNTVLRET- 303 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 LN Q +Y+E ++ S L+ L+NDILD + ++AG +++ S L ++L EV Sbjct: 304 --PLNDMQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENSAFDLIEVLEEVSSLF 361 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 + I + + DG++ V D RL Q+ S +++NA+ F+ +G I L+ D Sbjct: 362 GMTASQKGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFTEEGEIEIGLRI--DE 419 Query: 717 GDFIFSVKN-----NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 G + SV N G IPE + K +F F R+ G GLGL I + + L G Sbjct: 420 GGPLDSVANIWIQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTGLGLVISQRLVELMG 479 Query: 770 GHVSISS 776 G + I S Sbjct: 480 GTIGIES 486 >gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 922 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K+ F+ VS+ELR+PLT I+G+ L+K L KQ + I ++ +V Sbjct: 527 ANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAPERVKQG--MASIERNAHAQAQIV 584 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +DIL ++ + G ++L + L ++ +I I I+V L D Sbjct: 585 DDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEPGEGLSHVCGDP 644 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +LSNA+ F+ K V ++ R + SV +NG I VF+RF Sbjct: 645 DRLQQVMWNLLSNAVKFTPKRGLVTVRVGRSDSQVAISVTDNGKGIATSFLPYVFDRFRQ 704 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT---TINCRIPS 790 R G+GLGL+IV + LHGG V S EG T+ +P+ Sbjct: 705 GDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLPLPA 755 >gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1702 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 12/225 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA A K+ F+ ++S+E+R+P+ IIG TDL ++L N++Q +Y+ + +S+ Sbjct: 1075 EAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---NAEQREYLTMVQSSAAS 1131 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677 LL ++NDILD + ++AG ++L+ S L +L E +++A + H+ + I +I D Sbjct: 1132 LLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEIICDIIPDTP- 1190 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKNNGSSIPED 733 + D RL QI + ++ NA+ F+++G + D NG+ FSV + G IP + Sbjct: 1191 DHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKLEDITNGEVTLAFSVADTGIGIPAE 1250 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLGL+I + L GG + S Sbjct: 1251 KLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAES 1295 >gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] Length = 1044 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 20/239 (8%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E AL + +A A+E K+ F+ ++S+E+R+PL IIGFTDLLK ++ L +Q + Sbjct: 376 ETALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLLKNTE---LTPEQRE 432 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHEN 665 +V I SS LL ++N ILDL+ +++ K+ IV N + E + +I A + E Sbjct: 433 FVNIIEKSSENLLEIINAILDLSKIESK--KIEIENIVFNP-IEEFENAIEVYAPRAAEK 489 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDF 719 +I + D L D ++ ++ ++SNA+ F+ +G V +K + + Sbjct: 490 DINFALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEIRKVKEYNERAEI 549 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G IPED K +F F R+ G GLGL+I FI L GG +++ S Sbjct: 550 YFEVRDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNLES 608 >gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1042 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 181/365 (49%), Gaps = 26/365 (7%) Query: 425 LETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481 LE +Y T + Q E +D SE +A+ PDG N F ++ +++ G + Sbjct: 655 LEVQYQTADRAQSELRAILDASSEVIALLAPDGAFLTVNRRFCDIFGVPADQVL-GRRLI 713 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQT 538 ++ A ++ ++D +++ ++++ D + + + L E +I P Q Sbjct: 714 DMRAEIRWFFGDAD--EVYERMLSALQDAQDVFREQVVQLRPQHRELAIFSAPVWTANQV 771 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 L + V V ERA+ + +K+ FV VS+ELR+PLT+I G+ D+L Sbjct: 772 HLGRLYVFRDVTHERAV----------ERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGD 821 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G L + + ++ + +++ LL L+ND+LD++ ++AG + L+ + + + L+ +V ++ Sbjct: 822 AGPLAVEHQELLQIVKSNADRLLLLINDLLDMSRIEAGKLMLHRAPLDVRPLIRQVATAL 881 Query: 659 ATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 ++ + R+ + D D R+ QI + +LSNA+ ++ +G + ++ + Sbjct: 882 RPQLDAKHQRLNLDLSETPPDDAPPLMFGDAARVHQILTNVLSNAIKYTPQGGEISVRLS 941 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + +V++ G + + + +F+RF +R R G GLGL+I S ++LH G Sbjct: 942 VEPPWMCIAVQDTGIGLTPEEQERIFDRFYRVRNRATREASGTGLGLAITRSLVDLHQGR 1001 Query: 772 VSISS 776 +++ S Sbjct: 1002 ITVES 1006 >gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] Length = 558 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++ ++Q ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL E+K + K + I ++V + S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQV-DVLRHVS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G TV ++ D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G V++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 552 >gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 786 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609 AER L +K A A++ K+ F+ ++S+ELR+PL I+GF +L+++ GSL S + + Y Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL++++DIL ++ ++A +KL I L+ + ++ + ++ I Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEANRVKLVRREIGLDAAIAAAVTLVSKEAASKSVAI 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + G L + +AD + L QI I+ NA+ F+ +G V L+ NG + + G Sbjct: 627 DIELAGTL-NVLADERALHQILLNIIQNAVKFTPEGGRVALRGRSCNGFAHLFIGDTGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785 IP+ + F + +N R +G GLGL+I S LHGG + I S+EGV T + Sbjct: 686 IPKAAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGVGTLVL 743 Query: 786 CRIP 789 R+P Sbjct: 744 VRLP 747 >gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1005 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 13/246 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ E A+ K+ F+ ++S+ELR+PL ++G LL+ G L+ Q++ V Sbjct: 620 LSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEA---GDLDRDQNELVHIAL 676 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL +++DILDL+ ++AG M+L + + + +V A +R++ D Sbjct: 677 DSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCD 736 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730 D RL QI +L NAM F+ +G+ + ++ ++ +FSV + G I Sbjct: 737 ELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGI 796 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC- 786 P D S+F F RR G GLGL IV ++L GG +++ S+ EG C Sbjct: 797 PHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCL 856 Query: 787 --RIPS 790 R+PS Sbjct: 857 PFRLPS 862 >gi|332524438|ref|ZP_08400650.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107759|gb|EGJ08983.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 1021 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 140/260 (53%), Gaps = 9/260 (3%) Query: 529 SIIPLPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 +++P P+ + ++TD AE A E+ ALR++ + K+ F+ +S+ELR+PL Sbjct: 609 TVLPGPDGRPRRRIGVEWDITDRRAAEAARQERAIALRES-QAKSRFLSRMSHELRTPLN 667 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++GFT+LL GS + ++++ + + LL LV+D+LDLA+++ G M++ + Sbjct: 668 AVLGFTELLLADS-GSRDGSWRRHLQAVRGAGQQLLALVDDVLDLASLEGGEMRVASERV 726 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L L + + + + ++ VI+ G +AD RL Q+ +L+NA+ ++ G Sbjct: 727 ALRGLALQALELVEPLRGQRDV--TVIAGTLDGIVLADAVRLRQVLQNLLTNAIKYNRDG 784 Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764 V +++ R +G + SV ++G + E + +F F R G G+GL IV+S Sbjct: 785 GLVEIESRRRDGKVLVSVADSGRGMTEQQLRHLFEPFNRLGLEREGIPGTGIGLVIVKSL 844 Query: 765 INLHGGHVSISSSDEGVTTI 784 + GG +S+ S+ GV T+ Sbjct: 845 VERMGGSISVRST-PGVGTV 863 >gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 679 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 129/239 (53%), Gaps = 21/239 (8%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +RAL ++A D+ K F+ VS+ELR+PL +I+GF LL +KL N Q + V+ Sbjct: 364 QRALDRTHDA----DQAKGEFLAAVSHELRTPLNSIMGFAQLLLETKL---NDSQVEDVK 416 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--- 668 I A L L+ DILDL+ +++G + L L++L+ E+ +H+ +R Sbjct: 417 LILAGGRQLHELIADILDLSMIESGELDLRVQHCALDELVAEL-----VDIHQAQVRDRE 471 Query: 669 IKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725 +++++D L + DR+R+ Q+ + ++SNA+ F+ GS V ++A + D++ +V + Sbjct: 472 LELVADVADDLPTIECDRRRIGQVLTNLMSNAIKFTETGS-VTVRARLEQDDYVSIAVID 530 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 G I E VF + R ++ +G GLGL+I + HGG + S+ EG T Sbjct: 531 TGIGIAESELPGVFEEYRQAGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGST 589 >gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 969 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL GSL +Q ++ I SS Sbjct: 290 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---GSLARQQRDHLNTIRKSS 345 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 ILL ++NDILD + ++AG + + L D++ EV +A H+ N+ + ++ + Sbjct: 346 EILLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLVYNDV 405 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729 + + D RL QI + +L+NA+ F+ G V+L+A+ + D SV + G Sbjct: 406 PNNLMGDPLRLKQIITNLLNNAIKFTHTGE-VVLRASLEEEDASNGSVTLRVSVADTGMG 464 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +S+F+ F R+ G GLGL+I + GG + + S Sbjct: 465 LSRAQQRSLFDAFSQADASTARQYGGTGLGLAISKRLAEEMGGKIGLES 513 >gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1205 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 14/236 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L + + A++ K+ F+ ++S+E+R+PL +IGF D+L S LN Q +Y+E Sbjct: 674 EYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKS---PLNENQQKYME 730 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I AS+ LL+L+NDILD + ++AG + L+ + + +L + I + ++ NI + + Sbjct: 731 TIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHEAYQKNIEVLL 790 Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSV 723 K+ + +AD RL QI +LSNA+ F+ G + LK N F FS+ Sbjct: 791 NIPQKIDQYIIADGLRLRQILINLLSNAVKFTHDGE-IELKVEEQNSALHPNKKQFTFSL 849 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++ G I E + +F F R+ G GLGL+I + L + + S+ Sbjct: 850 RDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESKLEVRST 905 >gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1076 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ +R+ L + E ++K F+ ++S+E+R+P+ IIG D+L ++L + Sbjct: 543 DVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETEL---D 599 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +YV I SS LL ++NDILDL+ ++AG M + L ++L + K Sbjct: 600 KSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQKAA 659 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDF 719 E N +K D K+ + + DR RLLQI S + SNA+ F+ G+ +I + + F Sbjct: 660 ETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFTQNGNVIIRIQWEGQDEKTQF 719 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F V + G I E+ K +F F + + + G GLGL I + + + GG + ++S Sbjct: 720 LRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIGLTS 779 >gi|251781108|ref|ZP_04824028.1| histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085423|gb|EES51313.1| histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 431 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 122/214 (57%), Gaps = 6/214 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN + VS++LR+PLT+IIG+ DLLK ++ K Y+E I + L L+N++ Sbjct: 210 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEIIDERTKSLNRLINELF 268 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686 + + + +KLNYS + + L+ ++ ++ N+ +K I+D + F+ AD ++ Sbjct: 269 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVVKDITDKDI--FINADIEK 326 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745 ++++ +L+NA+ +S K S V++K +N + SV N I ED K++F RF + Sbjct: 327 IVRVLENLLTNAIKYSVKNSKVLIKLFEENNYVVVSVSNKAKDITEDDLKNIFERFYKVD 386 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 R ++ GLGLSIV+ + LH G + ++ +++ Sbjct: 387 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNED 420 >gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium vinosum] Length = 742 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E +I L + + + + ++T+ RA+ EA +A K+ F+ ++S+E+R+P+ Sbjct: 493 ENTIFKLSSGEVVAVYNDLTEIKRAQ-------EAAERASRAKSQFLANMSHEIRTPMNA 545 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +IG +DLL + L++KQ Y+ I SS +LL ++NDILD + ++AG + L+ Sbjct: 546 VIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFS 602 Query: 647 LNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L+DLL++++ + +I I ++ L D RL Q+ +LSNA+ F+ +G Sbjct: 603 LDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG 662 Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 V+ L A + F V++ G I + +F F RR G GLGL Sbjct: 663 QVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLV 722 Query: 760 IVESFINLHGGHVSISSS 777 I + + GG + + S+ Sbjct: 723 ISQKLVEKMGGTLVLEST 740 >gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1195 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + + EK E L + + K+ F+ ++S+ELR+PL +++ LL + G+L++KQ +Y Sbjct: 509 KARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNSSGNLSNKQVEY 568 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ T LL L+NDILDLA +++G + + I DL + ++++ + + Sbjct: 569 SQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERTFRQVAQDKGLSF 628 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724 + D +L S + +D +RL QI +L+NA+ F+ +G + L N I F++ Sbjct: 629 SIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGGVTLRIGLDQINTNHPMITFAIS 688 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IP++ + +F F R+ G GLGLSI + GG + + S Sbjct: 689 DTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLGGRLGLVS 742 >gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. W3110] gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K12 substr. W3110] Length = 807 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|326776991|ref|ZP_08236256.1| histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326657324|gb|EGE42170.1| histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 460 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 4/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+ E K F +++S+ELR+P+ ++ T L+ L +Q + + I Sbjct: 210 LEEKSARLRETSEAKTRFWRNISHELRTPVNAVVALTRLMLAPDSAPLTDEQRRQLSLID 269 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS LL LV D+LD+A +AG ++++ L LL ++ ++ ++ + + Sbjct: 270 ASGESLLALVGDLLDVAKAEAGQLEVSTGPTDLRVLLAQLG-AVMRNTGTADVVLLMPEP 328 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L +AD L ++ +LSNA+ F+ KG V L+ D F+V + G IPED Sbjct: 329 ADLPVAMADEALLTRVLRNLLSNALKFTEKGE-VRLEFRVDPPWMTFTVTDTGIGIPEDE 387 Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F QR RG GLGL + L GG + +SS+ T + +P Sbjct: 388 LPRIFEDFYQVRGPLQRAHRGTGLGLPYARTLTELLGGTLRLSSTPGAGTRVEVELP 444 >gi|199597922|ref|ZP_03211347.1| Signal transduction histidine kinase [Lactobacillus rhamnosus HN001] gi|229550854|ref|ZP_04439579.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1] gi|258507248|ref|YP_003169999.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus GG] gi|258538435|ref|YP_003172934.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] gi|199591179|gb|EDY99260.1| Signal transduction histidine kinase [Lactobacillus rhamnosus HN001] gi|229315804|gb|EEN81777.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1] gi|257147175|emb|CAR86148.1| Two component sensor transduction histidine kinase [Lactobacillus rhamnosus GG] gi|257150111|emb|CAR89083.1| Two component sensor transduction histidine kinase [Lactobacillus rhamnosus Lc 705] gi|259648614|dbj|BAI40776.1| two-component sensor kinase [Lactobacillus rhamnosus GG] Length = 396 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 4/234 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S ++ +Y + Sbjct: 145 EEERRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EAELLKYTHTAYLKAKQ 203 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+ + V + KLN + +L ++ S + H+ ++RI V + Sbjct: 204 MKVLVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPNPLM 263 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++L ++F+ ++ NA+ + G + L A R + + V N+G+ IP D +F Sbjct: 264 MEADTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLF 323 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RF V + + G GLGL+I +S I LHGG++ SS E +T+ +P K Sbjct: 324 DRFYRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-LTSFVIHLPLK 376 >gi|161520791|ref|YP_001584218.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189353027|ref|YP_001948654.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|160344841|gb|ABX17926.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189337049|dbj|BAG46118.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 654 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 13/244 (5%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQY 609 L +A +AD +K+ + VS+ELR+PL I G+ ++L+ S++ + Q Sbjct: 261 LRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQA 315 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I S+ L +V D+LD +++ G ++L + + + ++++ + H I + Sbjct: 316 VDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITL 375 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 G AD +RL Q+ S +LSNA+ F+ G +++ AR + SV + G Sbjct: 376 VTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVRLSVADTGQG 435 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-TINC 786 + + ++F+ F +NA +RG+GLGLSIV + LHGG V +S G T+ Sbjct: 436 MAPEALPNLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTV 495 Query: 787 RIPS 790 +P+ Sbjct: 496 MLPA 499 >gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1064 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A ++ D +K V ++S+ELR+PLT I+G+++LL + L + +E I L Sbjct: 545 ARKELDRLKEELVANMSHELRTPLTAILGYSELLLKRRTEVLTPWHTTKIEGIRTGGQRL 604 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+LVND+LD+A +DAG ++L T ++N LL E + + E + + + Sbjct: 605 LSLVNDLLDIAKLDAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQHIPLL 664 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------------- 718 + D +R+ Q + +LSNA+ F+ + T+ L + N D Sbjct: 665 MIDPERIGQAVTNLLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVPPMLAG 724 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + V ++G +P + +++RF RR G GLGLSIV+ + LHGG Sbjct: 725 QYVLIQVSDSGVGVPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHGGRTWA 784 Query: 775 SSSDE 779 +S+ E Sbjct: 785 TSAGE 789 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A + E L + D K +F ++S+ELR+PLT I+G + L+T +L + Sbjct: 333 SARSYQAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRT-RLSGAGEEVH 391 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I + L LVN +LD + ++AG M+ Y + L + E+ + + + Sbjct: 392 AELDVIHRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELASVFRSAVERAGL 451 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + V DR ++ +LSNA+ F+ +G+ V ++ R D + V + G Sbjct: 452 TLDVDCPALDEPVYVDRAMWEKVVLNLLSNALKFTFEGA-VRVRVRRSGPDAVVVVADTG 510 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +PE +F RF + NA G G+GL++V + LHGG + S++ TT Sbjct: 511 TGVPEAEMPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTIDAESTEGVGTTFT 570 Query: 786 CRIP 789 RIP Sbjct: 571 LRIP 574 >gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] Length = 561 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++ ++Q ++ I S Sbjct: 328 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 384 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL E+K + K + I ++V + S Sbjct: 385 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQV-DVLRHVS 443 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G TV ++ D + V + G I ++ +F Sbjct: 444 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 503 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G V++ S TT +P Sbjct: 504 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 555 >gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] Length = 617 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] Length = 929 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT+ L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIEKSAKNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 N++NDILD + ++AG + L + L EV AT HE + + + D K+ Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ I R D + F V++ G I E Sbjct: 400 VGDSLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDVVELQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|325286240|ref|YP_004262030.1| integral membrane sensor signal transduction histidine kinase [Cellulophaga lytica DSM 7489] gi|324321694|gb|ADY29159.1| integral membrane sensor signal transduction histidine kinase [Cellulophaga lytica DSM 7489] Length = 457 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 145/251 (57%), Gaps = 17/251 (6%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++ +A+ + +A +D++K++F+ ++S+E+ +P+ I+G D LK +L N + + Sbjct: 213 IKHNKAVLARQKA-ESSDKLKSAFLANISHEIGTPMYGILGSADFLK--ELHKNNKESQE 269 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y++ I + LL ++ DI++++ V++G+M LN ST +N ++N S+ T E I+ Sbjct: 270 YLQLIEENGNKLLGIIEDIVNISKVESGLMTLNNSTFNINSVINNTFNSVTTMAKEKGIQ 329 Query: 669 IKVISDGKLGSFVA----DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723 I I++ + S A D+++L + +++NA+ ++ +G T+ LK N + I FS+ Sbjct: 330 I--INNNLISSNEALVHTDKEKLTTVLKHLINNAIKYTEQG-TITLKCYYKNFNTIEFSI 386 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-G 780 K+ G +P+D ++F F V + G G+GL+I +++ + GG +S+ ++ E G Sbjct: 387 KDTGIGVPKDKIAAIFKAFYQVDTDQKNALHGAGIGLAIAKAYTEMLGGKMSLENNQENG 446 Query: 781 VT---TINCRI 788 T TIN ++ Sbjct: 447 ATFKFTINAQV 457 >gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 419 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 478 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 479 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 535 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 536 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 593 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ SV++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 594 GDYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 653 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 654 VDSEPGMGSQFTLRIP 669 >gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 150/296 (50%), Gaps = 17/296 (5%) Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVR 550 +G+++F + ER+ + S ++ + P+ + + + V++T+ + Sbjct: 613 EGFEVFTYVPELEGSERREWTYIRKDGSQIIISMVVTPIRDNAVITGYLGIAVDITERKK 672 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609 AER L E A + K+ F+ ++S+E+R+PL +IGFTDL LKT +LN Q QY Sbjct: 673 AERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT----ALNETQQQY 728 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V ++ S+ LL+++NDILD + ++AG ++L+ S + + ++ ++ + + + + Sbjct: 729 VAIVNQSANSLLSIINDILDFSKIEAGKIELDISKCDIYEFSSQASDILSFQAQQKGLEM 788 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSV 723 + +L F+ AD RL QI +LSNA+ F+ KG I + F V Sbjct: 789 LLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEKGEIELEIKPIAYPSVGMTTIRFEV 848 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++ G I ++ + +F F+ +R G GLGLSI + L G + + S+ Sbjct: 849 RDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGLGLSISNKLLALMGSKLQLEST 904 >gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] Length = 617 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|84393237|ref|ZP_00991999.1| sensor histidine kinase FexB [Vibrio splendidus 12B01] gi|84376143|gb|EAP93029.1| sensor histidine kinase FexB [Vibrio splendidus 12B01] Length = 813 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL IIG + +L S+L + KQ Q Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPLNFEDFVVEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + V D RL Q+ ++SNAM F+ G V+ +A +GDF V++ Sbjct: 381 DLERLSDLPAAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANITMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ + IN+ GH+ + +S+EG Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ R+P Sbjct: 500 STFTVSIRVP 509 >gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] Length = 550 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++++ F+ VS+ELRSPLT+I G LL + G L K +E ++ L+ ++N Sbjct: 306 EQLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIIN 365 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILD+ + +G + T L++L+ E ++ AT ++IK D Sbjct: 366 DILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDAN 425 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF-- 742 R++Q+ + ++SNA FS G TV + + + SV++ G I PED K +F RF Sbjct: 426 RIIQVLTNLMSNAAKFSKPGGTVEISVDKTPENVCVSVRDEGMGIAPEDQHK-IFQRFAD 484 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 ++N+ R + G GLGLSI ++ + GG + S + TT +P K Sbjct: 485 MANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533 >gi|228939140|ref|ZP_04101734.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972018|ref|ZP_04132635.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229150235|ref|ZP_04278456.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550] gi|228633207|gb|EEK89815.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550] gi|228787677|gb|EEM35639.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820509|gb|EEM66540.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 443 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442 >gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 957 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 140/270 (51%), Gaps = 15/270 (5%) Query: 530 IIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 II + Q +L ++++ R E L + +A A+ K+ F+ ++S+E+R+P+ +I Sbjct: 540 IITVNGEQCLLNITRDISERKRYEEELQQARQAAEAANRAKSEFLANMSHEIRTPMNGVI 599 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G LL+ ++L NS+Q +Y++ + S+ LL+L+NDILDL+ ++AG + L Y+ L Sbjct: 600 GMVQLLQFTRL---NSEQQEYLQCLETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLR 656 Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 + EV + +++H+ +++ ++D D RL QI +L NA+ F++ GS Sbjct: 657 HSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGSI 716 Query: 708 VILKAAR----DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 I AAR NG SV + G + + + +F F + RR G GLGL+ Sbjct: 717 TI--AARITDQQNGTLTICLSVSDTGIGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLT 774 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 I L GG + SSD ++ +P Sbjct: 775 ICRRLAELMGGRIWAESSDGHGSSFFVELP 804 >gi|221210070|ref|ZP_03583051.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221170758|gb|EEE03224.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 688 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 12/233 (5%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQY 609 L +A +AD +K+ + VS+ELR+PL I G+ ++L+ S++ + Q Sbjct: 295 LRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQA 349 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I S+ L +V D+LD +++ G ++L + + + ++++ + H I + Sbjct: 350 VDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITL 409 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 G AD +RL Q+ S +LSNA+ F+ G +++ AR + SV + G Sbjct: 410 VTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQG 469 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + + +F+ F +NA +RG+GLGLSIV + LHGG V +S G Sbjct: 470 MAPEALPHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPG 522 >gi|188590027|ref|YP_001921841.1| histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188500308|gb|ACD53444.1| histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 431 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 122/214 (57%), Gaps = 6/214 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN + VS++LR+PLT+IIG+ DLLK ++ K Y+E I + L L+N++ Sbjct: 210 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEVIDERTKSLNRLINELF 268 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686 + + + +KLNYS + + L+ ++ ++ N+ +K I+D + F+ AD ++ Sbjct: 269 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVVKDITDKDI--FINADIEK 326 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745 ++++ IL+NA+ +S K S V++K +N + SV N I E+ K++F RF + Sbjct: 327 IVRVLENILTNAIKYSVKNSKVLIKLFEENDYVVVSVLNKAKDITENDLKNIFERFYKVD 386 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 R ++ GLGLSIV+ + LH G + ++ ++E Sbjct: 387 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNEE 420 >gi|332981850|ref|YP_004463291.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699528|gb|AEE96469.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 477 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K +++K+ F+ VS+ELR+PLT I G+ +L T + + + IS + L ++ Sbjct: 243 KKEKLKDEFIASVSHELRTPLTAIKGWAIILDTDDMDD-RKLLKEGLGIISNEADRLSSI 301 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V D+LD + + +G M+LN + + VK +A N I+ + D Sbjct: 302 VEDLLDFSKLASGKMRLNRRKTDVKSVAEYVKTHMAPVAERNAIQFTTQCRDDIPVAYMD 361 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R+ Q+ +L NA F+ G V L A +NG IF VK+NGS I E+ + +F Sbjct: 362 ADRMKQVLINVLDNAFKFTDTGGEVELMAWAENGHLIFDVKDNGSGIDEEDLAHIKQKFY 421 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + GLGLSI + + LHGG + I SS TT+ RIP Sbjct: 422 KG--KNSKASSGLGLSIADEIVRLHGGSMDIDSSLNEGTTVTIRIP 465 >gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 808 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G L +L + L + + +VT+ +R L E Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESL-MIET 555 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659 >gi|291298578|ref|YP_003509856.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM 44728] gi|290567798|gb|ADD40763.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM 44728] Length = 1458 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 20/257 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L EK E L +A K+ F+ ++S+ELR+PL +++ LL + +L+ KQ + Sbjct: 1020 ARLGLEEKAEQLAQASRYKSQFLANISHELRTPLNSLLLLARLLAENTEQNLSPKQIDFA 1079 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ + LL L++DILDL+ ++AG M ++ + +L + + + + N++ Sbjct: 1080 RTIHSAGSDLLTLIDDILDLSKIEAGRMDVDPHEVSFTELCGRAEATFRPQAEDKNLQFS 1139 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------DNG 717 V + DG FV D Q+L Q+ LSNA+ F+ GS V LK R D Sbjct: 1140 VELEDGLPDVFVTDSQKLQQVLRNFLSNAVKFTDSGS-VTLKVGRTDPSYSFGISSLDGS 1198 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 D + F+V + G I +D + +F F A G R G GLGLSI +S+ +L GG + Sbjct: 1199 DASYYFTVADTGIGISDDKMQMIFEPF-QQADGGTSRKYGGTGLGLSISKSYADLLGGAI 1257 Query: 773 SISSSDEGVTTINCRIP 789 + +S +T +P Sbjct: 1258 VVDTSPGRGSTFTLYVP 1274 >gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 510 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 118/520 (22%), Positives = 221/520 (42%), Gaps = 55/520 (10%) Query: 305 LTHTYE-ILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362 + H++E IL NL I + D NR F++R+ L D A + Sbjct: 1 MPHSFESILENLPQGIVLLDPANRVTAFNSRTLEILGLPDGAIGKG-----------MNI 49 Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422 ++LP + + + H + L +G+ + + + GG I +E+++ Sbjct: 50 DRLPGTADCRAAA---CRQSTTGRPHTSQFALSDGRMVSMTCAPSKEGGWILSYEDISTL 106 Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482 + +E + ++ G+ +F ++ L NPA+ ++ + PGT + + Sbjct: 107 IRVEDSLTEQHHRFDAALSNMPHGLCMFDSTKKLILCNPAYARMYNLPDLLTQPGTPLVD 166 Query: 483 IAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 I A R N +D F + + + Q + L+ V++ + P+ N + T Sbjct: 167 ILAYRGREGNGPADTATYFDVVFEATARGAVASQNIV-LVDGRVIKITHNPMQNGGYVAT 225 Query: 542 FVNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHV 576 +VT +VR L ++ L R +E++ FV Sbjct: 226 HEDVTKTVRLTEELRRHHDQLETTVQSRTAEVERQARELERMLAQERNINELQRQFVAMA 285 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDA 635 S+E R+PL I L K G++ + S V+ I AS +++L+ IL +D Sbjct: 286 SHEFRTPLAIIDAAAQRL-LRKRGAVEPEFLSDKVDQIRASVNRIVDLMESILSAGRLDT 344 Query: 636 GIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692 G + ++Y L L+ +QS K H R + DG L F+ AD + + Q+F+ Sbjct: 345 GKIDISYDACALRSLIRSCCERQSTIAKTH----RFVLDIDG-LPEFIDADPRTVAQVFT 399 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR 751 +LSNA+ ++ S + + A + G+ S+ ++G I PED+ + +F R+ Sbjct: 400 NLLSNAVKYAPGTSEIRVTAWEETGNVKVSISDDGVGIDPEDVPR-LFQRYFRAGTSTGI 458 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G G+GL++V+ + LH G + + S+ +T +P K Sbjct: 459 AGTGIGLNLVKQIVELHHGSIEVRSARGCGSTFTVTLPIK 498 >gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC 29799] gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC 29799] Length = 589 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 163/355 (45%), Gaps = 38/355 (10%) Query: 442 HLSEGVAVFGPDGRIKLSNPAF-RSLWKT---EENRLSPGTHIRNIAATCSRYYNESDGW 497 H+++GV F DG + NPA R L +T + ++ T +IAA S E G+ Sbjct: 256 HMTDGVVAFSRDGAVIQCNPAAERMLHRTIPVGGDEVTYDTLFGDIAALPSVLAVEQPGY 315 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 D ER+ + ++LE + P + V + D +TE Sbjct: 316 ---------LDGERE--------IDGTILELLLAPFSSESAGGVMVVIHD-------VTE 351 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + RK +E++ FV +VS+ELR+PLTNI + + L + + + ++ I S Sbjct: 352 Q----RKTEEMRREFVANVSHELRTPLTNIRSYAETLVDNAGELPPNMEKNFLGVILNES 407 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDG 675 + ++V D+L L+ D+G +L + + +V ++ + H + +R+ + + Sbjct: 408 DRMTHIVQDLLTLSRFDSGHSELKLAPFSFEGAIRDVYNAVLLDAQRHGHTLRLGI--EE 465 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 L + + DR+R+LQ+ ++SNA+ ++ G ++ + A R V +NG IP Sbjct: 466 NLPNILGDRERILQVMMNVVSNAIKYTPDGGSIAISAGRLRDRVWMEVADNGIGIPAADR 525 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F RF V A + G GLGLSI + I+ H G + + D T+ + Sbjct: 526 PRIFERFYRVDKARSRESGGTGLGLSIAKEIIDRHEGVIRLVDKDGPGLTVRVEL 580 >gi|320354358|ref|YP_004195697.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122860|gb|ADW18406.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 636 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 11/229 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 ++A A+ +K+ F+ ++++E+R+P+ IIG+T++L S L L K+ ++V I SS Sbjct: 155 SQAEESANRMKSEFIANINHEVRTPMNAIIGYTEMLANSTL--LGPKEKRFVAIIHKSSM 212 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGKL 677 L+ + NDI++L+ +D+G +++ S+I L L+ EV+ + E I I I+ Sbjct: 213 ALVAIFNDIMELSKIDSGRLQIMTSSIRLPTLIREVESLFKDQAEEKGIVLISRIAGHVP 272 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIP 731 +F+ D RL Q+ ++SNA+ F+S+G + KA D F+++++G IP Sbjct: 273 QNFILDGTRLKQVLQNLISNAIKFTSEGQVELTVDGSASKAQAGCYDLSFTIQDSGIGIP 332 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + +F F +R GVGLGL++ + + GG + + S + Sbjct: 333 AADQQKIFELFRQREDTIAKRYGGVGLGLTLCSRLVTMMGGRIDLLSKE 381 >gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 773 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 14/267 (5%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P QT+L +VTD E L + A+E K+ F+ VS+E+R+PL I+G L Sbjct: 231 PVVQTVLR--DVTDRRLIEEDLLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAAL 288 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L ++ L +Q+ Y++ + +S LL L++++LD + +AG + + + L L+ Sbjct: 289 LSDTR---LTPEQAAYIKALESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVEN 345 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 V + +A + H + I V L V D RL QI + N + F+ +G + Sbjct: 346 VAELLAPRAHAKGLEIAVRLHPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVD 405 Query: 710 LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A D G + +V++ G PED + +F F H RR G GLGL+I + + Sbjct: 406 GRPAPDGGTLLDIAVRDTGIGFRPED-AERLFGEFEQVDHGPARRYGGTGLGLAIAQRLV 464 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 L GG ++ +S++ +P E Sbjct: 465 TLMGGTIAATSAEGAGAVFRVVLPVPE 491 >gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] Length = 751 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ + E ++ +K+ + VS+ELR+PL I G+ ++L+ S +L + Q ++ Sbjct: 362 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL---RVQAIDA 418 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V DILD +++ G ++L+ + + L +V + T I ++ Sbjct: 419 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 478 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D +RL Q+ S ++SNA+ F+ G V + A D+ + +V + G I Sbjct: 479 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 538 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + VF+ F ++ RRG+GLGLSIV + LHGG V + S+ TT ++P Sbjct: 539 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 598 Query: 790 S 790 + Sbjct: 599 A 599 >gi|317403603|gb|EFV84093.1| periplasmic sensor hybrid histidine kinase [Achromobacter xylosoxidans C54] Length = 925 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 11/247 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E AL + A +A E K F +S+E+R+PL I+G +LL L L Sbjct: 421 DITAQKKVEHALRQAKLATDRASESKAMFFATISHEIRTPLYGILGTLELLA---LTGLT 477 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q QY+ I SS+ LL +N LDL+ ++AG +L S DL+ +V + A + Sbjct: 478 GQQEQYLNTIQQSSSTLLRTINGTLDLSRIEAGHEELEISAFSPADLVEQVVANYAARGR 537 Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I++ G S + D R+LQI + ++SNA+ F+ G V+ +A G Sbjct: 538 AKGLDVYAITEVGMPASALGDSIRILQILNNLVSNAVKFTEAGRVVLRASASAEGPGRTH 597 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G I E +F + A G GLGL+I +L GG +S+ Sbjct: 598 LRFQVADTGPGICETHRARLFEPYFRAPAAQDCDVAGTGLGLTICRRLSDLMGGSLSV-V 656 Query: 777 SDEGVTT 783 S+EG+ T Sbjct: 657 SEEGLGT 663 >gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] Length = 908 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 545 VTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + + ++A +A E + A KN F+ +S+E+R+PL I+G +DLLK + + Sbjct: 408 LKERLKANQAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDLLKNT---N 464 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +N QS+YV I S LL ++NDILD + + AG +++ I L DLL++ A Sbjct: 465 MNETQSRYVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLDQCAGIFAKD 524 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + +I + + + K +D RL Q+ LSNA+ F+ KGS ++ + N Sbjct: 525 IEKKDIDVTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQKGSVQLILSVEGN-TLN 583 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 VK+ G IP S+F F R+ G GLGL+I + L GG VS+ S++ Sbjct: 584 LKVKDTGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELMGGGVSVESNE 643 Query: 779 -EG-VTTINCRIPSKE 792 EG V C+I +E Sbjct: 644 NEGSVFEFYCQIHQQE 659 >gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1] Length = 935 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 35/297 (11%) Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 CS Y+ ++G L+ LS S Y P+ + F +++ Sbjct: 401 CSDYFESAEGRHLY--------------------LSCSPTRYKGEPV----LLCAFSDIS 436 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + E AL + A A+E K F+ +S+E+R+PL ++G +LL + L+++Q Sbjct: 437 ARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRT---VLDAQQ 493 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y+ I SS+ LL L+ D+LD++ ++AG + L S DL+ EV Q + Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720 +++ D +L + D R+ QI + +LSNA+ F+ G V+L+A N D + Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGR-VVLRARLLNRDGERSCLL 612 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G I E +F+ F + H G GLGL I + L G + + S Sbjct: 613 WQVSDTGKGIAEQDQPFIFDPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVS 669 >gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 917 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 7/265 (2%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +P+ T+ + ++T+ + + L A+E K+ F+ +S+ELR+PL IIG+++ Sbjct: 385 IPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + + ++ I+++ LL+L+NDILDL+ ++A M++ T + DLL Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +V ++A M N + + LG +D+ +L Q +LSNA F++ G V L+ Sbjct: 505 DVAATVAPLMARNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563 Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 R D +F V + G + + + +FN F R G GLGLSI SF Sbjct: 564 RREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 + GG V++ S + +P++ Sbjct: 624 MIGGVVTVESEVGKGSVFTIEVPAQ 648 >gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 791 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 20/250 (8%) Query: 542 FVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 FV V D + A ER L + + ++ K+ F+ +S+E+R+P+ I+G ++LL S Sbjct: 349 FVAVKDDITARKKLERELQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAES 408 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L+ +Q + + ++ LL+L+NDILDL+ V++G ++L+++ + L D E++ Sbjct: 409 ---NLSGEQRELLTVQRRAALALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDL 465 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715 + + N+ + + D ++ ADR RL Q+ ++ NA+ F+ +G I ++ Sbjct: 466 FRQQAIKKNLAFSITLEDDLPKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQ 525 Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINL 767 G+ + FSV ++G IP + +F F H G G GLGL+I + + L Sbjct: 526 QGEMVKLKFSVVDSGCGIPSEAQSQIFEPFTQADAYVTRHHG---GTGLGLTISQRLVQL 582 Query: 768 HGGHVSISSS 777 GG + + S+ Sbjct: 583 FGGTLQVEST 592 >gi|229109466|ref|ZP_04239058.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15] gi|228673963|gb|EEL29215.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15] Length = 443 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442 >gi|182436367|ref|YP_001824086.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464883|dbj|BAG19403.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 460 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 4/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+ E K F +++S+ELR+P+ ++ T L+ L +Q + + I Sbjct: 210 LEEKSARLRETSEAKTRFWRNISHELRTPVNAVVALTRLMLAPDSAPLTDEQRRQLSLID 269 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS LL LV D+LD+A +AG ++++ L LL ++ ++ ++ + + Sbjct: 270 ASGESLLALVGDLLDVAKAEAGQLEVSTGPTDLRVLLAQLG-AVMRNTGTADVVLLMPEP 328 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L +AD L ++ +LSNA+ F+ KG V L+ D F+V + G IPED Sbjct: 329 ADLPVAMADEALLTRVLRNLLSNALKFTEKGE-VRLEFRVDPPWMTFTVTDTGIGIPEDE 387 Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F QR RG GLGL + L GG + +SS+ T + +P Sbjct: 388 LPRIFEDFYQVRGPLQRAHRGTGLGLPYARTLTELLGGTLRLSSTPGAGTRVEVELP 444 >gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 2453 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q + T +++T + E++L E + A+E K++F+ ++S+E+R+P+T I+G+ DL+ Sbjct: 2043 QLIGTLLDITSQRQFEQSLKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDE 2102 Query: 597 SKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ K + Y+ + + LL+++NDILDL+ ++AG + + + LL +V Sbjct: 2103 ----LIDHKIATAYLSTVRRNGEFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVC 2158 Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + + EN + + + GK+ + + +D +RL QI ++ NA+ F+ KGS I + Sbjct: 2159 SIMDVRAAENRLELDIFYYGKIPAEIESDPKRLKQILINLVGNAIKFTMKGSVKIFVSCN 2218 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D F + + G I K +F F H R G GLGL+I + N+ GG + Sbjct: 2219 DQ-QLQFIIVDTGIGITTRQQKRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEI 2277 Query: 773 SISSS-DEG 780 + S D+G Sbjct: 2278 CVESEKDKG 2286 >gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1263 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 E A K+ F+ ++S+E+R+PL ++G L+ T+ L+++Q +YV SS Sbjct: 867 KETAENASRTKSEFLANMSHEIRTPLNGVLGMLQLMTTT---PLDTEQKEYVLAAIQSSK 923 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L++DILDL+ ++AG + + L L V + + + + D L Sbjct: 924 RLTRLLSDILDLSRIEAGRLVIQEGEFTLAPLRTSVLELFFVAAKDKGLSLDFTLDPALP 983 Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPE 732 V D RL QI ++ NA+ F+ KGS + D + F+V + G IP Sbjct: 984 PRLVGDEARLRQILFNLVGNALKFTEKGSVTVAAVPLGATDAVPARVLFTVTDTGIGIPP 1043 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D + +F FV RR G GLGLSIV+ + L GG + I ++ TT +P Sbjct: 1044 DRLRDIFEPFVQAEGTYTRRFQGAGLGLSIVKKLVGLMGGSLEIDTAPGQGTTCYLSLP 1102 >gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 597 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 167/353 (47%), Gaps = 32/353 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ N A T + + +L Sbjct: 267 MADGVITFNRDGEILITNPPAERFLQAWYFEQG---------NGAETMAPLPPQVK--EL 315 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ +++ +S++ +L+ + +L + PL + T V +V R +TE+ Sbjct: 316 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYSKTT------VRGAVAVLRDMTEE- 363 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ FV +VS+ELR+P+ + G+++ + + + + ++ + + I S Sbjct: 364 ---RRLDKLRKDFVANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 419 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA ++AG + L+Y T+ L + + + E I + + Sbjct: 420 IGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKNEDIQ 479 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ + K V + R V+++GS IPE+ VF Sbjct: 480 ITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDGVTIHVQDSGSGIPEEDLPFVF 539 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A R G GLGL+I ++ + H G +S+ S TT +P+ Sbjct: 540 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLPN 592 >gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] Length = 799 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ + E ++ +K+ + VS+ELR+PL I G+ ++L+ S +L + Q ++ Sbjct: 410 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 466 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V DILD +++ G ++L+ + + L +V + T I ++ Sbjct: 467 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 526 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D +RL Q+ S ++SNA+ F+ G V + A D+ + +V + G I Sbjct: 527 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 586 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + VF+ F ++ RRG+GLGLSIV + LHGG V + S+ TT ++P Sbjct: 587 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 646 Query: 790 S 790 + Sbjct: 647 A 647 >gi|317054848|ref|YP_004103315.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] gi|315447117|gb|ADU20681.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] Length = 470 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A E L+ D ++NSF+ +VS+ELR+P+T+I GF D L + +KQ Y+ I Sbjct: 229 AFNEMAANLKSYDTMRNSFLANVSHELRTPMTSIGGFVDGLLDGTIP--KAKQGYYLRII 286 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L LV +L+LA ++AG ++ N +T + + + + + ++ E NI I+ + Sbjct: 287 SSEVARLTRLVKSMLNLAKIEAGELEPNKTTFPVTEPILDTLLTFEPRIDEKNIEIRGLD 346 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIP 731 ++ S AD + Q+ ++ NA+ F + G + + + D G+ + S++N+G + Sbjct: 347 VQRI-SMYADIDLIHQVMYNLIENAIKFVNDGGYI--EFSFDEGEDVTSVSIRNSGEGLA 403 Query: 732 EDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ED VF+RF ++ RG +G+GLGL+I S + +HGG + + S T IP Sbjct: 404 EDELPLVFDRFYKTDKSRGIYAQGLGLGLNIARSIVEIHGGKIMVKSLKGEYTEFTFTIP 463 >gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 522 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 9/249 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT++ + E+ L +AD +K+SF+ ++S+E+R+PL I+GF+ L+ + Sbjct: 281 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DDE 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY + + +S++LLNL NDILDL+ ++AG ++L+Y + L D+ ++ + + K Sbjct: 338 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHE-LYVKSV 396 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + +R+ + D +R+ QI +++NA+ F+S G I ++ D + F Sbjct: 397 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSAGE--IHFGFQEKADMVQFY 454 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G IP + ++F RF Q G GLGL+I + GG + + S T Sbjct: 455 VSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGKGT 512 Query: 783 TINCRIPSK 791 +P K Sbjct: 513 VFYFTLPVK 521 >gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 1843 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 11/248 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R+L EK E L+ K+ F+ ++S+ELR+PL +++ + +L ++ G+L +Q ++ Sbjct: 1432 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFA 1491 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S LL L+N+ILDL+ ++AG M + L + ++++Q+ + + Sbjct: 1492 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQ 1551 Query: 671 VISDGKLGSFVADR-----QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 V ++G + +R RLLQI ++SNA F+ +G V+ G F+V++ Sbjct: 1552 V----RMGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRD 1607 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP D K +F F R+ G GLGL+I L GG + + S+ + Sbjct: 1608 TGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGRGSV 1667 Query: 784 INCRIPSK 791 +P++ Sbjct: 1668 FTLVLPAR 1675 >gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 120/218 (55%), Gaps = 3/218 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+K DE+K+ FV VS+E R+PLT+I LL G +N Q + ++ I S L Sbjct: 381 LKKVDELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDDQKELLQVIQEDSERLN 440 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVN++LDL+ +++G M++++ + +++ + + + E NI+IK+ L Sbjct: 441 RLVNELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVR 500 Query: 682 ADRQRLLQIFSKILSNAMDFS-SKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++ + S ++ NA+ ++ + G+ VI ++ + + SV +NGS I E+ K +F Sbjct: 501 ADHTKIGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVTSVTDNGSGISEEYQKIIF 560 Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++F+ N + G GLGL+I + HGG + + S Sbjct: 561 DKFLQVNGGESTQGGAGLGLAISREIVRAHGGDMWVDS 598 >gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1426 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 17/255 (6%) Query: 535 NAQTMLTFV-NVTDSVRAERALTE-----KNEALRKADEIKNSFVQHVSYELRSPLTNII 588 NA+ +T V + + ER L + K+EA A K++F+ ++S+E+R+P+ I+ Sbjct: 731 NAEGKMTKVTGINRDITQERGLEDWLRKAKDEA-DAASAAKSNFLANMSHEIRTPMNAIL 789 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G L+K + +L +Q+ YV S+ LL+L+NDILD + VDAG ++L + + Sbjct: 790 GMLHLVKRT---TLTHQQNDYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVE 846 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST 707 +LL E+ ++ E ++ + D + ++ + D+ RLLQI ++SNA+ F+ +GS Sbjct: 847 ELLCELSTVLSGSSLEKDVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGSV 906 Query: 708 VI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 V+ L SVK+ G I +D S+F+ F RR G GLGL I Sbjct: 907 VLEIKQLSIDPRVSRLSVSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVIC 966 Query: 762 ESFINLHGGHVSISS 776 F+ L GG + + S Sbjct: 967 RRFVELMGGSLQVDS 981 >gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10] Length = 598 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 132/237 (55%), Gaps = 15/237 (6%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ++RK ++I+ FV +V++EL++PLT+I GF + LK + + ++++ I + L Sbjct: 368 SVRKLEQIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIED-TTVAVKFLDIIDIEAERL 426 Query: 621 LNLVNDILDLATVDA-----GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L+ND L L+ ++A +MK++ L +++EV + + + NI ++V+++ Sbjct: 427 YMLINDTLQLSEIEAMRKDDSVMKID-----LIQIIDEVVLILKSSADKKNIALEVLANS 481 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 +A+R R+ Q+ ++ NA+ ++ + + +K+ + NG+ + SVK+ G IPE Sbjct: 482 AEVPVIANRNRIKQMLINLIDNAIKYNVENGKIYIKSEKANGNTVISVKDTGIGIPEKHH 541 Query: 736 KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF +G+ R G GLGLSIV+ +NL+ G ++I S T ++P Sbjct: 542 SRIFERFYR-VDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLP 597 >gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] Length = 2450 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +L EK E L + K+ F+ ++S+ELR+PL +++ LL +K G+L+ KQ +Y Sbjct: 1720 ARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSGKQVEYA 1779 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I AS LL+L+N+ILDL+ V+AG M++ IVL +L V +S + N+ Sbjct: 1780 NTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFD 1839 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------ 717 V + D QRL Q+ +LSNA F+ +G ++ D G Sbjct: 1840 VELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGGVQLVVKLADKGVRFEHEVLKRAK 1899 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V + G I +D K +F F R+ G GLGLSI L GG + + Sbjct: 1900 RVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHV 1959 Query: 775 SSSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1960 ESTLGKGSTFTLFLP 1974 >gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 785 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 5/229 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ +K+ F+ +S+ELRSPLT I+G+T LL+ LG++ + + +E I ++ L Sbjct: 403 EANRLKDEFLATLSHELRSPLTAILGWTKLLRQVDLGAVRAAHA--LEVIERNALAQNQL 460 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + D+LD++ + AG +++ + + L ++ ++ I + + + + D Sbjct: 461 IEDLLDISRIVAGKLRIEAAAVDLAGVIEAAIGTVRPAAQARAIEVDTEIEPGVPLLMGD 520 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+ +L+NA+ F+ G V ++ +R +V ++G I + VF RF Sbjct: 521 ATRLQQVVWNLLANAVKFTPNGGRVRVRLSRRGTAAEVAVSDSGLGIAPHLLPHVFERFR 580 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+IV + LH G VS +S EG T R+P Sbjct: 581 QADSSSTRSHGGLGLGLAIVRQLVELHSGTVSAASPGEGQGATFTVRLP 629 >gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 775 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 7/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL+ S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+++L E ++ Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAA 495 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI + + +LG VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 496 DGNIELPALPQLPDELG-VVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAERVAV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV ++G I ++ +F F G GLGL++ +S + + G +S+ S Sbjct: 555 SVVDSGHGIAPELIDQLFKPFERLNADPSVEGTGLGLALSKSMLEMMHGTLSVHS 609 >gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 873 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 444 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G L +L + L + + +VT+ +R L E Sbjct: 445 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 504 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESL-MIET 620 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 679 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724 >gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1076 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 34/286 (11%) Query: 522 SDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALR-------KADEIK 569 D+ LE +PL A + + +VT +A+ L N L+ A ++K Sbjct: 492 PDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADAKLRNVNAELQTAKDRADAASQVK 551 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ ++S+ELR+P+ +IG T LL + SL+++Q +V+ I +S LL L+NDILD Sbjct: 552 SEFLANMSHELRTPMNAVIGMTGLLTHT---SLDAQQQDFVDTIRSSGDALLCLINDILD 608 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688 + ++AG +++ L + E + +A + + + I ++D L V D RL Sbjct: 609 FSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGIVGDVTRLR 668 Query: 689 QIFSKILSNAMDFSSKGSTVI--------LKAARDNGD--------FIFSVKNNGSSIPE 732 Q+ +L+N + F+ G ++ ++ +G F F+VK+ G IPE Sbjct: 669 QVLVNLLTNGVKFTDNGEVIVYVKEVTAEIQDREGSGSEGQSPRRLFQFAVKDTGIGIPE 728 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 D +F F V ++ + G GLGL+I + L GG + + S Sbjct: 729 DRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDS 774 >gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 525 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 9/249 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT++ + E+ L +AD +K+SF+ ++S+E+R+PL I+GF+ L+ + Sbjct: 284 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DDE 340 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY + + +S++LLNL NDILDL+ ++AG ++L+Y + L D+ ++ + + K Sbjct: 341 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHE-LYVKSV 399 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + +R+ + D +R+ QI +++NA+ F+S G I ++ D + F Sbjct: 400 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSAGE--IHFGFQEKADMVQFY 457 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G IP + ++F RF Q G GLGL+I + GG + + S T Sbjct: 458 VSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGKGT 515 Query: 783 TINCRIPSK 791 +P K Sbjct: 516 VFYFTLPVK 524 >gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 862 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 16/265 (6%) Query: 529 SIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 SI + NA+ M T +++T E+ L E +A + F+ +S+E+R+P Sbjct: 157 SITSIYNAEGMREGYLFTAMDLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTP 216 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + I G LL +++L N Q YV I S+ LL ++NDILD + +DAG M+L Sbjct: 217 MNAITGMAYLLGSTEL---NHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEEL 273 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L ++ + + + E ++I+ I G S V D RL QI + SNA+ F+ Sbjct: 274 PFSLQQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFT 333 Query: 703 SKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 S+G TV L+ R + D +F V + G+ I + + +F F R+ G GL Sbjct: 334 SQGEVALTVTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGGSGL 393 Query: 757 GLSIVESFINLHGGHVSISS-SDEG 780 GL+I + + GG + + S D+G Sbjct: 394 GLAICKELTQMMGGEIWVESIPDQG 418 >gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW] gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW] Length = 911 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608 RA AL+ N L + D +K+ F+ V++ELR+PLT++ +++L + L +Q Q Sbjct: 654 RATEALSAANVRLMELDRMKDDFLSTVTHELRTPLTSVRALSEILYDTP--ELPEEQRQK 711 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I S L L+N +LD+A ++AG + + +++ + L E S + + Sbjct: 712 FLATIIKESERLTRLINQVLDMAKIEAGEIDWHIASLDIAALAREAADSTRQLFRDKGVA 771 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726 +++ + +G L + D RL+Q+ +LSNA+ F+ ++G V L +V +N Sbjct: 772 LELDLPEGNLPPALGDSDRLIQVMVNLLSNAVKFAPAEGGRVRLSLRPAPHALEVAVDDN 831 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + ++VF +F V +A G+ +G GLGL+I ++ GG + + S+ T Sbjct: 832 GPGIAPEYHEAVFEKFRQVGSAKTGKPQGTGLGLAICRRLVDGMGGRIWVESTPGAGATF 891 Query: 785 NCRIPS 790 RIP+ Sbjct: 892 RFRIPA 897 >gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1068 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A++ L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+V + Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTD 456 Query: 649 DLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++++ + + G V D QRL QI +L+NA+ F+ G Sbjct: 457 SVLQRLRETFEPLARQKGLALEIAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A G F+V + G I + + +F F +RR G GLGLSI Sbjct: 517 SLTVQAHAPGRVHFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG +S+ S + +P+ Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601 >gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] Length = 1057 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%) Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588 QT + T ++ A++ L +N+ +R ++E+ K+ F+ ++S+ELR+PL + + Sbjct: 326 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 LL +K G+L+++Q +Y + I +S+ LL L+NDILDL+ ++AG ++L T+V + Sbjct: 386 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTD 445 Query: 649 DLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L ++++ + + G V D QRL QI +L+NA+ F+ G Sbjct: 446 SVLQRLRETFEPLARQKGLALEIAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 505 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + A G F+V + G I + + +F F +RR G GLGLSI Sbjct: 506 SLTVQAHAPGRVHFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565 Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790 GG +S+ S + +P+ Sbjct: 566 QRMGGSISVDSEPGRGSCFTLELPT 590 >gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1406 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 928 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLSPKQVEFA 987 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 988 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1047 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716 V +S + D QRLLQ+ +LSNA+ F+ GS ++++ ARD+ Sbjct: 1048 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLET 1107 Query: 717 --------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 G FSV + G I + +F F R+ G GLGLSI Sbjct: 1108 GSLTDPDGGLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1167 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1168 LLGGEIHAQSEPGRGSTFTLYLP 1190 >gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] Length = 1430 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 15/249 (6%) Query: 540 LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VTD + AER + E AL +A+E K+ F+ +S+++R+P+ I+G T L Sbjct: 1029 LVRADVTDMLAAERRTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMT-ALA 1087 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + LG + + ++ IS SS LL+L+NDILD++ +++ + LN I + ++L ++ Sbjct: 1088 MAHLGD-QERVTDCLQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLS 1146 Query: 656 QSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712 ++++ + I G++ F D R+ QI ILSNA+ ++ +G V +A Sbjct: 1147 AIMSSQARSAGLTFS-IQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAE 1205 Query: 713 -----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 RD + F+V + G + E+ VF F + + G GLGLSI + +NL Sbjct: 1206 EIPPVGRDCARYRFTVSDTGVGMTEEFLNHVFEPFTRSRQTTRVEGTGLGLSITKGLVNL 1265 Query: 768 HGGHVSISS 776 GG +S+ S Sbjct: 1266 MGGAISVES 1274 >gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2483 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +L EK E L + K+ F+ ++S+ELR+PL +++ LL +K G+L+ KQ +Y Sbjct: 1753 ARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSGKQVEYA 1812 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I AS LL+L+N+ILDL+ V+AG M++ IVL +L V +S + N+ Sbjct: 1813 NTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFD 1872 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------ 717 V + D QRL Q+ +LSNA F+ +G ++ D G Sbjct: 1873 VELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGGVQLVVKLADKGVRFEHEVLKRAK 1932 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V + G I +D K +F F R+ G GLGLSI L GG + + Sbjct: 1933 RVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHV 1992 Query: 775 SSSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1993 ESTLGKGSTFTLFLP 2007 >gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 572 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 21/257 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + +Q +++E Sbjct: 291 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLI-LDGMADDPEEQREFLEE 349 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S+ LLNL+NDILDLA ++AG M LN S + LN+L V + + N+ K+ Sbjct: 350 AHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEAVNNFTCPQAQQKNLSFKLK 409 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------- 720 + + QRLLQ+ ++ NA+ F+ +G V+ F Sbjct: 410 KPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEVVKKKIFCHDQEFPAIAK 469 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + + +F +FV +H G GLGL+I + + GG + S Sbjct: 470 ISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGLAISQKLVQAMGGQIDFYSMG 529 Query: 779 EGV------TTINCRIP 789 EG+ T C++P Sbjct: 530 EGLGSTVTFTVPLCQVP 546 >gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 683 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 22/245 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE+AL E E A+ K+ F+ +S+E+R+P+ I+G +LL + L+ +Q +Y Sbjct: 134 QAEKALFEAKEEAEAANRAKSDFLASMSHEIRTPMHAILGMAELLLET---PLSPEQQRY 190 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 VE + LLN++NDILD++ V+AG ++L L +++ +++A + H + + Sbjct: 191 VEIFRNAGENLLNIINDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLEL 250 Query: 670 K--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNG--- 717 ++ D + + + D RL QI ++ NA+ F+ KG V+ L + G Sbjct: 251 ACHILPDVPV-NLIGDPVRLQQILINLVGNAIKFTEKGEVVVHVEKSTELTGGPETGTEE 309 Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + +FS+ + G IP++ +F +F R+ G GLGLSI + + GGH Sbjct: 310 GGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGH 369 Query: 772 VSISS 776 + + S Sbjct: 370 IRLDS 374 >gi|253997050|ref|YP_003049114.1| histidine kinase [Methylotenera mobilis JLW8] gi|253983729|gb|ACT48587.1| histidine kinase [Methylotenera mobilis JLW8] Length = 656 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 5/215 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ K+ F+ S+ELR+PL I+GF LL+T L L KQ + + ISA+ LL Sbjct: 279 QEANAEKSIFLSRTSHELRTPLNAILGFAHLLETD-LTDL--KQKESLSMISAAGKHLLK 335 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++ +LD+A +++G M+++ ++ LL+E + +I+IK L Sbjct: 336 LIDQVLDIARIESGDMQIDIQPCDISALLDEATHFMHPLAKARDIQIKTYYPPDL-VIAT 394 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DRQRLLQI ++SNA+ + + V ++A + + I V + G IP+ M VF F Sbjct: 395 DRQRLLQIVLNLISNALKYGPANAKVYMQAYKKDDKVIIEVADEGKGIPKSMHHRVFTPF 454 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 A + GVGLGL++ + GG ++I+S Sbjct: 455 ERLGAENTKVEGVGLGLALSNQMMAALGGEINIAS 489 >gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC 33641] gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC 33641] Length = 1054 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A + F +V+ E+ LT +A +A++ K++F+ +S+E+R+PL +G +LL Sbjct: 443 QAVILCAFTDVSAHAEMEKHLTWAKQAADEANDAKSTFLATMSHEIRTPLYGALGTLELL 502 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 L LN++Q QYV+ I ++S +LL +++DILD++ ++AG ++L+ S +L+ E Sbjct: 503 S---LTQLNNQQRQYVDRIESASQMLLQIISDILDISKIEAGQLQLDKSEFNPRELVQEC 559 Query: 655 KQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709 + A H + + +I+ + D R+ QI + ++SNA+ F+ G+ V+ Sbjct: 560 TGTYAGMAHRKGLLLFSIIATDIPERVIGDPARIRQILNNLISNAIKFTEIGTVVVRLSQ 619 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768 L+ + + F+ V ++G I + + +F F + +A R G GLG+SI L Sbjct: 620 LERSSLSAKFLLEVCDSGVGIDKAEQEKLFTPFYMIDAERNMAGGAGLGMSICARLAELM 679 Query: 769 GGHVSISSSDE 779 + + S + Sbjct: 680 DTKIQLRSEPQ 690 >gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1] gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1] Length = 773 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 L +A R+AD +K+ + VS+ELR+PL I G+ ++++ +L Q Q ++ Sbjct: 367 LRGARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPVAEAL---QRQAID 423 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L +V D+LD +++ G ++L+ + L ++ +V ++ T I ++ Sbjct: 424 AIDRSARSLSRMVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGITLET 483 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + D +RL Q+ S +LSNA F+ +G V + +R+N + SV + G + Sbjct: 484 HCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGGRVTVALSRENARALLSVTDTGQGVA 543 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788 + VF F + RRG+GLGLSIV LHGG ++S G TT + Sbjct: 544 PEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHIAELHGGSARVTSDGTGHGTTFEVAL 603 Query: 789 PS 790 P+ Sbjct: 604 PA 605 >gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 935 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 422 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 481 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 482 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSN 538 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + D + S D RL Q+ S +LSNA+ F+ G + RD Sbjct: 539 YLPLVVKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 597 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 598 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 657 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 658 ESEPGLGSLFGVRIP 672 >gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131] gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 816 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF +VT++ RA E+ EAL +A K F+ +S+E+R+P+ +I G T+LLK S+ Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S+ YV+ I S+ +L ++V+D+LD A +++G+++L ++ +L++V + + Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + +RI VI L + D +L QI + SNA+ F+ +G TV++ A R G Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F F+V + G I + + +F ++ + RR G GLGL+I GG + Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519 Query: 774 ISSS 777 + S+ Sbjct: 520 VRST 523 >gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 1319 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 19/234 (8%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-----------NSKQSQY 609 A R+ ++IKN F+ VS+ELR+PLT+++GF L+ KL + K Q Sbjct: 1068 AEREIEQIKNDFLATVSHELRTPLTSVLGFAALI-LDKLNRVIFPWVAIGDQPTQKAIQQ 1126 Query: 610 V----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 V E I A S L +L+ND+LD+A +++G ++ N+ ++ +L S ++ + Sbjct: 1127 VRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIILERAIISTSSLFEDK 1186 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+R+ L D+ RL+Q+ +LSNA+ F+ GS V +A ++ + ++ + Sbjct: 1187 NLRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS-VTCQAQQNQEYLVIAITD 1245 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G IP + VF+RF V N + +G GLGLSI I HGG + + S Sbjct: 1246 TGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHHGGQIWVESQ 1299 >gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 767 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ + E ++ +K+ + VS+ELR+PL I G+ ++L+ S +L + Q ++ Sbjct: 378 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 434 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V DILD +++ G ++L+ + + L +V + T I ++ Sbjct: 435 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 494 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D +RL Q+ S ++SNA+ F+ G V + A D+ + +V + G I Sbjct: 495 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 554 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + VF+ F ++ RRG+GLGLSIV + LHGG V + S+ TT ++P Sbjct: 555 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614 Query: 790 S 790 + Sbjct: 615 A 615 >gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134] gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134] Length = 1290 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 128/243 (52%), Gaps = 10/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T R ER L + +A K F+ +S+E+R+P+ +IG T +L +K Sbjct: 887 LDITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENKP--- 943 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + ++ + S+ LL+L+NDILD +DAG ++ L +L+ +++S A Sbjct: 944 RVDQLENLKILKFSAQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTA 1003 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720 E NI++K +D + + D RL Q+ + +++NA+ F+ KG ++L+ N + Sbjct: 1004 QEKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFTLKGEVKLMLQLITQNNRQV 1063 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+VK+ G IP++ + +F+RF R+ G GLGL+IV+ + L + + Sbjct: 1064 QLRFTVKDTGVGIPKEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLE 1123 Query: 776 SSD 778 S + Sbjct: 1124 SEE 1126 >gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 587 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74] gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74] Length = 906 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ NE L+++DE K+ FV V++E+R+PLT+I +++L + S + +++ + Sbjct: 667 LSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILH-DQADMDESMRQEFLSRVI 725 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L L+N +LDL D+G L+ I + DL+ E +++A + + +++ Sbjct: 726 RETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARDKQVTLEICPT 785 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIP 731 DR RL+Q+ +LSNA+ FS G+ TV L + + +V++NG I Sbjct: 786 QAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIRDERVN--LTVRDNGIGIE 843 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D+ + +F +F ++ R +G GLGL+I + I LH G +++SS C +P Sbjct: 844 PDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGEGAEFTCSLP 903 Query: 790 SKE 792 + E Sbjct: 904 ACE 906 >gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] Length = 558 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|190574099|ref|YP_001971944.1| putative repetitive protein with two-component sensor and regulator motifs [Stenotrophomonas maltophilia K279a] gi|190012021|emb|CAQ45643.1| putative repetitive protein with two-component sensor and regulator motifs [Stenotrophomonas maltophilia K279a] Length = 1033 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 L +++ +R ++E+ K+ F+ ++S+ELR+PL + + LL +K G+L +Q + Sbjct: 345 LVAQSQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVK 404 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I +S+ LL L+NDILDL+ ++AG ++L +V + +L ++++ + + Sbjct: 405 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVTDSVLQRLRETFEPMARQKGLA 464 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ +D S V D QRL QI +L+NA+ F+ G + A G F V ++G Sbjct: 465 LQIEADALAPSQLVVDSQRLQQILKNLLANAVKFTEHGKVSLHVRAAGQGRIRFEVCDSG 524 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + + +F F +RR G GLGLSI GG + + S Sbjct: 525 IGIAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDS 575 >gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM 17393] Length = 534 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ + E L E D +K++F+ ++S+E+R+PL I+GF +L Sbjct: 284 VITSVDIDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASMLVEED 343 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q Y+E + ++ +LL L++DILDL+ ++AG + N + + D ++ + Sbjct: 344 ----DKKERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRG 399 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716 K + + + + S+ D++RL+Q+ + ++NA+ F+S+G T+ D Sbjct: 400 YEIK-EDKPVPVLLASNLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQITLEYHFKEDT 458 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + FSV + G I D VF+RFV N +G GLGLSI S I GG + + Sbjct: 459 NEIEFSVTDTGIGIAPDAVGQVFDRFVKLNTF---SKGTGLGLSICRSIIEHLGGTIGLE 515 Query: 776 S 776 S Sbjct: 516 S 516 >gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 885 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 8/217 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASSTILLNLVN 625 K+ F+ +S+ELR+PL I+GFT L+ K L +++E I S LLNL+N Sbjct: 413 KSEFLARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLIN 472 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 D+L+++ ++AG + LN + L LL+ ++ + K +++ D + ++ D Sbjct: 473 DVLEMSKIEAGQISLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQTDE 532 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741 +L Q+ +L NA+ F+ G ++ N IF V++ G I + + VF Sbjct: 533 SKLRQVLINLLGNAIKFTDAGCIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFKP 592 Query: 742 FV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+ + R ++G GLGLSI + FI L GG +++SS Sbjct: 593 FIQTETGRKSQQGTGLGLSISQKFIKLMGGKITVSSQ 629 >gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48] gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48] Length = 918 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDG 675 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + V D Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI- 730 L S V D RL QI + ++SNA+ F+ +G+ V+ D+ D SV++ G + Sbjct: 392 PL-SLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDDQDDTVQLRISVQDTGIGLS 450 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P+D+ +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDV-RTLFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|315497089|ref|YP_004085893.1| histidine kinase [Asticcacaulis excentricus CB 48] gi|315415101|gb|ADU11742.1| histidine kinase [Asticcacaulis excentricus CB 48] Length = 518 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 TDS R +TE EA A ++K F + +S+E+R+PL ++G LL + SL Sbjct: 13 TDS----RLMTEA-EAREAAQKLKAREDFFKLMSHEIRTPLNGVLGMLSLLNRT---SLT 64 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Y++ S LL LVND+LD A ++AG + L I L LL V + ++ + + Sbjct: 65 AEQQSYLQTARESGEHLLTLVNDLLDYARIEAGHIHLESHLIELEPLLQSVAELLSPRAY 124 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 I I D +L + D RL QI + NA+ F+ G +I + G F V Sbjct: 125 AGGIEIAWSLDPRLEAIEIDEGRLRQILFNLAGNALKFTKSGGVLIGVTLTEGGAIRFGV 184 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G+ IPE+ +F F V +H G Q G GLGL +V+ I + + S Sbjct: 185 RDTGAGIPEEARVRIFEAFGQVDPSHAGAQYGGAGLGLVVVKKLIEAMNAELDLQS 240 >gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SMS-3-5] gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli SMS-3-5] Length = 949 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--QVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 841 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 9/264 (3%) Query: 535 NAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 NAQ +T FV+V++ AE A E +A +A +K+ FV ++S+ELR+PL +I+G Sbjct: 569 NAQGRITGVLSIFVDVSEFRAAEHATHEARDAAEEAFRVKSEFVANMSHELRTPLQSIMG 628 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F +L G N+ ++ I A+ +L LVND+LD+A +++ + ++ L Sbjct: 629 FAELGGLRSHG--NAAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRS 686 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ V + + + I +++ D AD R Q+ +L+NA+ FS G + Sbjct: 687 LIRPVVRELEPQQQHKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRID 746 Query: 710 LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINL 767 ++ D GD +V + G IP +F FV S+ + G GLGL+I I+ Sbjct: 747 VQGRIDGQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTKNGSGGTGLGLAICRKIIDA 806 Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791 G + S+ G +P++ Sbjct: 807 MDGTIVASNGPAGGAMFCITLPTR 830 >gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 932 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQMDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE + I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ V ++ +GD + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 813 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF +VT++ RA E+ EAL +A K F+ +S+E+R+P+ +I G T+LLK S+ Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S+ YV+ I S+ +L ++V+D+LD A +++G+++L ++ +L++V + + Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + +RI VI L + D +L QI + SNA+ F+ +G TV++ A R G Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F F+V + G I + + +F ++ + RR G GLGL+I GG + Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519 Query: 774 ISSS 777 + S+ Sbjct: 520 VRST 523 >gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1002 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 99/380 (26%), Positives = 166/380 (43%), Gaps = 40/380 (10%) Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487 NTL + QG +D+L++G+ V G+I NPAF ++ N L+ I Sbjct: 405 NTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTANTLNGHYQELPIFGLA 464 Query: 488 SRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 + S ++F A + D GT E + + L +VT Sbjct: 465 DLIEHTRSHPGEVFTADVALAKDRIGQAVGTAIFKRTDTQEVAAC----FGSALLIRDVT 520 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------- 597 A ++ D++K F+ VS+ELR+PLT+++GF +++ Sbjct: 521 --------------AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQKDVFPIL 566 Query: 598 -----KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 KL + + I + + L +L+ND+LD+A ++AG ++ I +LL+ Sbjct: 567 STEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLD 626 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 S A N +++ + L + DR RLLQ+ ++SNA+ F+ GS V + Sbjct: 627 WATTSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRV 685 Query: 713 ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 +D SV + G I PED K VF +F V + + +G GLGL I + + HG Sbjct: 686 KQDKDGVCISVIDTGVGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHG 744 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S + + IP Sbjct: 745 GRIWVESEPGHGSVFSFHIP 764 >gi|326939717|gb|AEA15613.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 452 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 288 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 289 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 346 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 347 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 406 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 407 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 451 >gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 598 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 32/353 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F +G I ++NP F W E+ N A T + + +L Sbjct: 267 MADGVITFSREGEILITNPPAERFLQAWYFEQG---------NDAETMAPLPPQVK--EL 315 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 FA ++ +++ +S + T++ + +L + PL +TM V +V R +TE+ Sbjct: 316 FARVVR--EEKEQSTEVTIQGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE- 363 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P+ + G+++ + + + ++ + + I S Sbjct: 364 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLR 419 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA ++AG ++L Y + L + V + E I + + Sbjct: 420 MGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRDENIE 479 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ + G TV L R V+++GS IPE+ VF Sbjct: 480 IAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDGVTIHVQDSGSGIPEEDLPFVF 539 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A R G GLGL+I ++ + H G +++ S TT + +P+ Sbjct: 540 ERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLPA 592 >gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 1219 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 14/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L ++ + L + K+ F+ ++S+ELR+PL +++ + LL +K G+L+ KQ +Y Sbjct: 523 KARLKLEQQAKQLSVTTKYKSEFMANMSHELRTPLNSLLILSQLLSENKSGNLSDKQIEY 582 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S + LL ++++ILDL+ VDAG M++NY + L D+ + V+Q+ A +I + Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLQDIESFVEQNFAAVASRKHIDL 642 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GD 718 V I + S V D R+ Q+ +LSNA F+++GS + D+ D Sbjct: 643 HVHIGEDIPQSIVTDSHRVKQVLRNLLSNAFKFTNQGSVELHVEKADSEKLPIYLNAEAD 702 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 ++ F+VK++G IP D +F F R+ G GLGLSI L GG + + Sbjct: 703 YVAFAVKDSGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGILVE 762 Query: 776 SSDEGVTTINCRIPS 790 S + + +PS Sbjct: 763 SEEGKGSCFTLFLPS 777 >gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 914 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 13/239 (5%) Query: 548 SVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +++ E + TE A +A+E K+ F+ ++S+E+R+P+ +IG +LL ++L N+ Sbjct: 369 TIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL---NA 425 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q +Y+ I+ S+ LL+L+NDILD + ++AG ++L + L D L + Q+ A + E Sbjct: 426 SQREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATE 485 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719 I + ++ + D RL Q+ ++ NA+ F+ +G V+ A D Sbjct: 486 KGIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWL 545 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+V + G I D K +F F RR G GLGL+I + L GG + + S Sbjct: 546 RFAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDS 604 >gi|229178406|ref|ZP_04305774.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W] gi|228605044|gb|EEK62497.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W] Length = 443 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDYLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442 >gi|167766601|ref|ZP_02438654.1| hypothetical protein CLOSS21_01107 [Clostridium sp. SS2/1] gi|225026939|ref|ZP_03716131.1| hypothetical protein EUBHAL_01195 [Eubacterium hallii DSM 3353] gi|323487589|ref|ZP_08092879.1| sensor protein [Clostridium symbiosum WAL-14163] gi|167711724|gb|EDS22303.1| hypothetical protein CLOSS21_01107 [Clostridium sp. SS2/1] gi|224955750|gb|EEG36959.1| hypothetical protein EUBHAL_01195 [Eubacterium hallii DSM 3353] gi|291547392|emb|CBL20500.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Ruminococcus sp. SR1/5] gi|291558624|emb|CBL37424.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [butyrate-producing bacterium SSC/2] gi|323399088|gb|EGA91496.1| sensor protein [Clostridium symbiosum WAL-14163] Length = 354 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A ++A+E KN + ++++++R+PLT +IG+ LL + ++ +YV+ + Sbjct: 123 QAAKQAEEKKNEIIMYLAHDIRTPLTTVIGYLSLLHEAP-DMPEQQKEKYVKVALNKAER 181 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+N++ ++ +A + + T+ L+ L+ +V I + N ++ L S Sbjct: 182 LEKLINELFEITKYNAHTVIIKKETVDLHCLIAQVIDEIYPTLSANGNTAVFTAEDNL-S 240 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++L ++FS +L NA +S + + + A R D + +N+G +IP++ S+F Sbjct: 241 VNADPEKLARVFSNLLRNAASYSYPQTEITISAKRLEHDIQITFENHGKTIPQEQLNSIF 300 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F + +A G GLGLSI E I+LHGG ++ SS +E + Sbjct: 301 EKFNRLDDARLSNTGGAGLGLSIAEEIIHLHGGKITASSQNETI 344 >gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1816 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL E+ + L A + K+ F+ ++S+ELR+PL +++ + LL + G+L+ KQ + Sbjct: 1230 QAKAALEERAQQLAVASKYKSEFLANMSHELRTPLNSMLVLSKLLSDNADGNLSPKQVDF 1289 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ LL L+NDILDL+ +++G M+++ S +L L + ++++ + +R Sbjct: 1290 AQTIHSAGADLLALINDILDLSKIESGAMQVDVSECLLAGLQDYIERAFRQLASQKGLRF 1349 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V D + G+ D +RL QI +LSNA F+ G V+ A G Sbjct: 1350 AVEVDRRTPGAIWTDERRLQQIVRNLLSNAFKFTEHGEVVVRIAPARGGWSRDAEGLNAA 1409 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 SV++ G I + + +F F R+ G GLGLSI L GG ++ Sbjct: 1410 GSVLALSVRDTGIGIAPEKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELAKLLGGELA 1469 Query: 774 ISSSDEGVTTINCRIP 789 + SS +T +P Sbjct: 1470 VESSPGKGSTFTLYLP 1485 >gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 931 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT LN+ Q Y+ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 ++NDILD + ++AG + L D L+EV + +A HE + + + D ++ Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDNRIPPGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ G+ +V LK+ DN + F V++ G I E Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDIDNNIELQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG VS++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501 >gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 928 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 415 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 474 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 475 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSN 531 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + D + S D RL Q+ S +LSNA+ F+ G + RD Sbjct: 532 YLPLVVKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 590 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 591 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 650 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 651 ESEPGLGSLFGVRIP 665 >gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 713 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 20/245 (8%) Query: 551 AERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 A R +TE+ EA+R DE K+ F+ VS+E R+PL I+G DL+ + Sbjct: 175 AGREITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDTP-- 232 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ +Q Y+ + S LL+L++ ILD + ++AG + L L+ V + +A Sbjct: 233 -LSPEQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAP 291 Query: 661 KMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + I + D L V D R+ QI + NA+ F+ G V + A R + Sbjct: 292 RAQDKGLEIAADLAEDLPL-QVVGDSDRVRQILLNLAGNAVKFTESGG-VGVTAERAGAE 349 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G IPE+ +F F RR G GLGL+I ++ GG + ++S Sbjct: 350 IALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTS 409 Query: 777 -SDEG 780 DEG Sbjct: 410 RPDEG 414 >gi|323139437|ref|ZP_08074486.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395308|gb|EFX97860.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 638 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTI 619 ALR AD K+ F+ +++ELR+PLT I LL+ S+ ++ + E + + Sbjct: 267 ALRDADRRKDEFLATLAHELRNPLTPIRNAVHLLRLNSETPGRENRNPRLFEMVERQVSH 326 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDG 675 L+ LV+D+L+++ + G ++L + L LL V + +I HE +R+ + S Sbjct: 327 LVRLVDDLLEVSRITRGKIELRKERLDLTALLRHVVDASQPAIQRGGHE--LRMDLPSAP 384 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + AD RL QIF+ +L NA ++ G T+ L AAR SV++NG IP ++ Sbjct: 385 LI--LDADPVRLSQIFTNLLDNAAKYTEAGGTITLTAARQGAAATISVRDNGVGIPAELL 442 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 VF+ F V + + G+G+GL++V S + +HGG V S+ G +T R+P Sbjct: 443 PRVFDIFTQVDRSLGRAQGGLGIGLALVRSLVEMHGGSVEADSAGLGRGSTFVVRLP 499 >gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] Length = 917 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731 L S V D RL QI + ++SNA+ F+ +G+ V I DN SV++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTGIGLS 449 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 450 SQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|227432675|ref|ZP_03914648.1| sensor histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351557|gb|EEJ41810.1| sensor histidine kinase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 361 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 139/261 (53%), Gaps = 6/261 (2%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P A T ++V++++ AE + E R+++ K+ + ++S++LR+PLT IIG+ L Sbjct: 104 PYAPTTQALIDVSNTI-AENTRRIREEE-RQSERSKDEMITNISHDLRTPLTAIIGYLGL 161 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S ++ +Y+ + S + LV D+ + + A LN +++ LNDL + Sbjct: 162 VEMGQALSEKDRK-KYIHTAYSKSNQMKVLVEDLFEYSQTQAQDAALNITSLSLNDLFGQ 220 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + E NI + +++ ++ AD +L ++ ++SNA + + + L A Sbjct: 221 LLAGYELEAQEKNIALNQLTNPEMIVIEADSDKLARVLMNLVSNAFKYGDGATFIKLTAQ 280 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 D+ + + V N+G IP++ +F+RF V ++ + G GLGL+IV+ + H G Sbjct: 281 IDDKNVVIRVTNDGVKIPDEAIGDIFDRFYRVESSRNSKTGGTGLGLAIVKGIVVQHHGS 340 Query: 772 VSISSSDEGVTTINCRIPSKE 792 V++ S D+ +T+ +P K+ Sbjct: 341 VAVESDDD-ITSFIITLPLKQ 360 >gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] Length = 928 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 12/236 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E+ L E E +AD +K++F+ ++S+E+R+PL I+GF+ LL +T G Sbjct: 687 DITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETEDQG-- 744 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y + + ++ +LL L++DILDL+ ++AG + +N L +V++S+ ++ Sbjct: 745 --EKREYSKMVEENNELLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRV 802 Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 ++++ + L S V+D RL Q+ + ++NA+ F++ G I D Sbjct: 803 KPG---VELLFEPTLPSCVIVSDPNRLHQVVANFVNNAIKFTTTGYIRIGYDQPDAKHLR 859 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I + C+ +F+RF+ Q G GLGLSI +S I GG + + S Sbjct: 860 IYVSDTGIGIAPEACEKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVDS 913 >gi|168183622|ref|ZP_02618286.1| sensor histidine kinase [Clostridium botulinum Bf] gi|237797003|ref|YP_002864555.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182673215|gb|EDT85176.1| sensor histidine kinase [Clostridium botulinum Bf] gi|229262568|gb|ACQ53601.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 469 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + KQ+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KL+ I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1253 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E +I L + + + + ++T+ RA+ EA +A K+ F+ ++S+E+R+P+ Sbjct: 493 ENTIFKLSSGEVVAVYNDLTEIKRAQ-------EAAERASRAKSQFLANMSHEIRTPMNA 545 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +IG +DLL + L++KQ Y+ I SS +LL ++NDILD + ++AG + L+ Sbjct: 546 VIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFS 602 Query: 647 LNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L+DLL++++ + +I + ++ L D RL Q+ +LSNA+ F+ +G Sbjct: 603 LDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG 662 Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 V+ L A + F V++ G I + +F F RR G GLGL Sbjct: 663 QVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLV 722 Query: 760 IVESFINLHGGHVSISSS 777 I + + GG + + S+ Sbjct: 723 ISQKLVEKMGGTLVLEST 740 >gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 511 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 25/236 (10%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ ++ K FV +S++L+SP+T ++G DL++ +KLG + QS+Y+ S ++ Sbjct: 251 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTPDQSEYLNAAIESCEEMV 310 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++ +L + +AG MKLN+ + L+N T I + L + Sbjct: 311 EMIDTLLGIHKFEAGKMKLNFREEDPSLLINRSVTKFQTPAQRGAISLFATLPPSLPAIS 370 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD--------------------NGDF 719 ADR +I +LSNA+ F+ +G + + A +D G+F Sbjct: 371 ADRSSFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPEECYPGQELPREGEF 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772 + V+++G IP++ S+F+RFV N +G+ RG GLGL+ ++ HGG++ Sbjct: 431 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHGGYI 486 >gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1040 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 133/252 (52%), Gaps = 4/252 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 +++ + R E+ L + A K+ F+ +VS+ELR+PL IIGF D++ T G + Sbjct: 784 DISRAKRVEQELIKARSEAEAASLQKSQFLANVSHELRTPLNAIIGFADVIATECFGPIG 843 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N + +Y++ I S +L+LVND+LD++ ++AG ++L + + LN+++ EV + + Sbjct: 844 NERYLEYLDDIKRSGHHVLDLVNDLLDISKIEAGKLELAFEAVSLNEVIGEVVALMQPQA 903 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIF 721 + + ++ + VADR+ + QI ++SNA+ F+ G +I+ + GD + Sbjct: 904 NREQVIVRSNLPSSVPPVVADRRSMRQIALNLVSNAVRFTPAGGQIIVSTSYSPEGDVVV 963 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +++G + ED + F V+ +R + G GLGL + ++ + ++SS+ Sbjct: 964 RFRDSGIGMSEDEIEIAMMPFQQVNPGNRRRGEGTGLGLPLTKALAEANRAGFAMSSTPG 1023 Query: 780 GVTTINCRIPSK 791 T + P + Sbjct: 1024 EGTLVEISFPPQ 1035 >gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 852 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 131/252 (51%), Gaps = 16/252 (6%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ ++ +++D AE AL E A++ + +F+ ++S+E+R+P+ IIG T+L Sbjct: 165 ARVLVLQRDISDVKAAESALISAKEVAESANKARGAFLANMSHEIRTPMNGIIGMTELAL 224 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++L +++Q Y++ + +S+ LL +VNDILD + ++AG M+ + D + E Sbjct: 225 DTQL---DAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAV 281 Query: 656 QSIATKMHENNIRIKVISDGK---LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + +A H+ +++++D + V D RL Q+ ++ NA+ F+ +G V LK Sbjct: 282 RVLAVSAHKKG--LELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTERGE-VALKV 338 Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 D FS+++ G +P D +++F F RR G GLGL+I + Sbjct: 339 EVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLV 398 Query: 766 NLHGGHVSISSS 777 L G + + S+ Sbjct: 399 QLMDGKIWLEST 410 >gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70] gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTVMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2] Length = 1240 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 3/235 (1%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLN 603 +T+ E L E N L++ D+ K F +VS+ELR+PLT I+G + +L + Sbjct: 585 ITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTPLTIILGQVEAVLSGQYYKNTL 644 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S + I +++ LL L+N +LD + + AG M LN + +N L+ ++ + Sbjct: 645 EPNSDIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNRQPVNINRFLSSYISAVKSSAS 704 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + NI + + + D+ + + ++SNA+ F+ +I++ + + F V Sbjct: 705 QKNINMIFVDNADDTFGFIDKDLFEAVIANLISNALKFTDSEGYIIIELNKLDTSFEIVV 764 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K++G IP+D ++F+RF + N+ + RG G+GL+ + + LH G +S+SS Sbjct: 765 KDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLAYTKEIVELHEGKISVSS 819 >gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1821 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1339 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAAGNLSPKQVEFA 1398 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPQSIREQLLEA 1518 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +GD I FSV + G I + +F F R+ G GLGLSI Sbjct: 1519 GSLRDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLP 1601 >gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 599 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 135/247 (54%), Gaps = 10/247 (4%) Query: 532 PLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P N ML ++T E+ L + E +AD +K++F+ ++S+E+R+PL I+GF Sbjct: 346 PQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGF 405 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + +L+ ++ ++ QY+ I ++ +LL L++DILDL+ ++A + + L Sbjct: 406 SSMLEEAE---DQEEKHQYITIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQL 462 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 N++ Q+I K + +++ + +F +D+ RL Q+ ++NA+ F+S+G+ + + Sbjct: 463 CNDLFQAIQMKTSP-QVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSEGN-ITI 520 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 D + FSV++ G I + +++F RFV N+ G GLGLSI +S + G Sbjct: 521 DYQIDGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSFIP---GTGLGLSICQSIVTQLG 577 Query: 770 GHVSISS 776 G + + S Sbjct: 578 GKIGVES 584 >gi|229043768|ref|ZP_04191468.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676] gi|228725569|gb|EEL76826.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676] Length = 443 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442 >gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 867 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%) Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERA 554 D+F ++ D L+ + SD E S+I P P + T +VR+E Sbjct: 555 DVFGLQVSQVIDNDTLLKRLQAVASDKQEETSVIINLPEPGTDKVQTVQASLAAVRSEEG 614 Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L L R+ D +K F+ ++ELR+PLT++IGF++++ G L +Q+ Sbjct: 615 LKRGVITLLRDISRERELDLMKTEFISTAAHELRTPLTSVIGFSEVMLQQ--GGLTEQQT 672 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +++ I + +L +V D+LDLA VD G +++L +N +L ++ Sbjct: 673 EFLSIIHKKAEVLGKIVEDLLDLARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDHR 732 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V+ D + V DR +L Q+ +LSNA+ FS S + + + + +V + Sbjct: 733 FK-TVLPDAPIEMLVDDR-KLFQVMENLLSNAVKFSPVDSLIQVTCQLADNELYIAVSDQ 790 Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G + +F++F +A R G+GLG++IV+S + H G + ++S TT+ Sbjct: 791 GIGMQPAQIDRMFDKFYRVDASNTAREGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVT 850 Query: 786 CRIP 789 +P Sbjct: 851 FTLP 854 >gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1171 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ + + + L+KA +K+SF+ ++S+E+R+PL I+G +L++ SL +Q++Y+E Sbjct: 494 EKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKD---SLTERQARYLE 550 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S L L+ND+LDL+ ++AG + L+ S+ +L+ V S+A K E I + Sbjct: 551 MAEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVI 610 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNG--DFIFSVKNN 726 + D + S +D R+ QI + +++NA+ F+ G + + R+ G +FI V + Sbjct: 611 DVVDLRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRAHSRLRETGELEFICEVSDT 670 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I E+ +F F +++ Q G GLGLSI + L G +S S Sbjct: 671 GIGIAEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSFES 722 >gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 816 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF +VT++ RA E+ EAL +A K F+ +S+E+R+P+ +I G T+LLK S+ Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S+ YV+ I S+ +L ++V+D+LD A +++G+++L ++ +L++V + + Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + +RI VI L + D +L QI + SNA+ F+ +G TV++ A R G Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F F+V + G I + + +F ++ + RR G GLGL+I GG + Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519 Query: 774 ISSS 777 + S+ Sbjct: 520 VRST 523 >gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 8/240 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + + D R RAL E A+ K+ F+ ++S+E+R+P+ I+G + +LK S+ L Sbjct: 137 IYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAILGLSTILKHSQ--PL 194 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q +Y++ + ASS LL L+ND+LD+A ++A +++ + L+ ++ ++ + K Sbjct: 195 TEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQLDQVIRDIADMMGLKA 254 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---D 718 E ++ +++ D G F D RL QI + + SNA+ F+ G I+ A+ G Sbjct: 255 REKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDSGEVAIIVASAPQGRHCH 314 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I D +F +F + R+ G GLGL+I ++ L GG +++ S Sbjct: 315 ITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLAISKTLAELMGGTIAVES 374 >gi|229172696|ref|ZP_04300253.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3] gi|228610736|gb|EEK68001.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3] Length = 438 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L + + KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + Sbjct: 206 HSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 264 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 265 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 323 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR RL Q+F I+ NA+ +S K V ++A ++ G + VK+ G I Sbjct: 324 TIERIEL---MGDRNRLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGIGI 380 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG +S S + TTI ++P Sbjct: 381 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLP 437 >gi|302325748|gb|ADL24949.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1008 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 140/262 (53%), Gaps = 27/262 (10%) Query: 537 QTMLTFVNVTDSVRAE-----------RALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 Q + F++V +S R + AL + A + A+ K F+ +S+E+R+PL Sbjct: 594 QIVAGFISVDESTRLQLEQKEQLETQAEALKQALSAAQAANSAKKEFLNSISHEIRTPLN 653 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG T + T LG + V+ I SS LL+++NDILD++ +++G L + + Sbjct: 654 AVIGLTSIASTH-LGDAERVKDCLVK-IDQSSDRLLSIINDILDMSRIESGKFDLKEAPM 711 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 L +L++EV++ I + +++ ++ I+D ++ V DR+RL Q K+LSNA+ F Sbjct: 712 HLFELVHEVERDIRNDLQAKDLKFELDCVDINDDEV---VCDRERLRQALLKVLSNAIKF 768 Query: 702 SSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754 + +G ++ + + F +K+NG + E+ K+V+ F + + RG+ Sbjct: 769 TKEGGSISMSVKETPLTKSSYAAYEFRIKDNGIGMSEEFLKTVYEPFARESTVSRDVRGM 828 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGL+I ++ + + GG + I+S Sbjct: 829 GLGLAITKNSVEMMGGQIEIAS 850 >gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1680 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 15/226 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ D +K F+ VS+ELR+PLT++ G LL L ++ + + L+ Sbjct: 1439 RELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVLQEEPETVEHMLKIVLRNCDRLIR 1498 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LVNDILDL +++G ++L +++LL + ++I+ E +I I++ S + ++V Sbjct: 1499 LVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTS---ISAYVW 1555 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIPE 732 A ++Q + +LSNA+ FS++G+ + L A A+ +FSVK+ G IP Sbjct: 1556 ASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGRGIPT 1615 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +++F RF V + Q+ G GLGL+I +S I H G + + S Sbjct: 1616 NKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDS 1661 >gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1362 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 18/248 (7%) Query: 544 NVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +VT +RAERAL + A K+ F+ +S+E+R+PL I+G+ DLL Sbjct: 858 DVTPRMRAERALKQATRLAEQAREEAEAASTAKSEFLAMMSHEIRTPLHGILGYADLL-- 915 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ G L ++Q + VE+I + LL +VND+LD + ++AG + L+ L L+ EV Sbjct: 916 TECGLLAAEQQRQVEHIRTAGRALLAVVNDVLDFSAIEAGRVALDPRPFALRALIGEVVA 975 Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712 + + + D + + V D+ R+ Q+ + +NA F GS + A Sbjct: 976 IVREPAERKGLTLAAEIDPAVPDWLVGDQGRVRQVLLNLAANAQKFCHAGSVTLSVAPDR 1035 Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768 A + F+V++ G I ED +F RF S A RR G GLGL+I ++ + Sbjct: 1036 IAAEALTVRFAVRDTGVGIEEDKLGRLFQRF-SQADGSIRREFGGTGLGLAISKALVEAM 1094 Query: 769 GGHVSISS 776 GG + + S Sbjct: 1095 GGRIGVES 1102 >gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 334] gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 334] Length = 669 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + +++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 384 KKGMQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 504 EPGVGSEFTCIIP 516 >gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 844 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 24/248 (9%) Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +F ++ D V RAE A EA R +K+ F+ +S+ELR+PL IIGF +L+K Sbjct: 592 SFNDMADRVGESFQRAEEARLRAEEASR----MKSEFLASMSHELRTPLNGIIGFAELIK 647 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + + + + E I S + LLNLVN ILD+A ++AG M L T+ + L+ EV Sbjct: 648 DD---AADEEMRENAEIIEKSGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVA 704 Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + + +V ++D + V D R+ Q+ +LSNA+ F+ G + AA Sbjct: 705 AIHQSGADAKGLDFQVQLADDLPPALVTDPVRVRQVLHNLLSNAVKFTQAGRVHTVVAA- 763 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ------RRGVGLGLSIVESFINLH 768 D + V ++G I D+ +F +F H+G G GLGL++ + L Sbjct: 764 DKDSVVIRVIDSGPGIALDLQDKIFEKF----HQGDAFLTRSHGGTGLGLTLARHLVELM 819 Query: 769 GGHVSISS 776 GG +S+ S Sbjct: 820 GGEMSLES 827 >gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 791 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 12/248 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVE 611 R L + + KA + K+ F+ +S+E+R+P+ I+G DLL LG+ L+ +Q YVE Sbjct: 266 RELEKSKDKSEKASQFKSQFLAMISHEIRTPMNAILGMGDLL----LGTELDPEQMGYVE 321 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S +LL ++NDILD +++G ++L + + V +S+A H +I + Sbjct: 322 IFRGSGELLLKIINDILDFVQIESGQIELVPVPFDPSQDVQSVCKSVAHSAHARDIEVIC 381 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DF---IFSVKNN 726 ++ G V D R+ Q+ I+SNA+ ++S G + +A ++G DF +F+V++ Sbjct: 382 DVAQGVPAQVVGDPVRVRQVLMNIVSNAVKYTSSGEVEVCLSAEESGEDFERLLFTVRDT 441 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE +S+F FV R GVGLGL+ L G + S + Sbjct: 442 GIGIPEGQRESLFEGFVQADGLASREYGGVGLGLAAASRLAVLMDGEIRFESESGKGSIF 501 Query: 785 NCRIPSKE 792 IP K+ Sbjct: 502 YFSIPFKK 509 >gi|311742382|ref|ZP_07716191.1| sensor histidine kinase KdpD [Aeromicrobium marinum DSM 15272] gi|311314010|gb|EFQ83918.1| sensor histidine kinase KdpD [Aeromicrobium marinum DSM 15272] Length = 348 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 40/365 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--------SPGTHIR-NIAATCSRY 490 +D +GV + GPDGR+ N RSL + + + P + N C+R Sbjct: 3 LDDFPDGVIIAGPDGRVAYVNDRIRSLARATGDEMLGMPLDEAMPFDDLNGNTWMACTRP 62 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 Y D + T + S +G+ L++ +++ P + SVR Sbjct: 63 Y------DGLSTRTTITEQSWYSPRGSEYLVTAALVRDR----PGGAVQRVIL----SVR 108 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 + RA + D ++ V V++ELRSPLT I GFT L SK + +Q +++ Sbjct: 109 SARARNHR-------DRERSDLVATVAHELRSPLTGIKGFTATL-LSKWDQFSEEQRRFM 160 Query: 611 -EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E + A + L L+ ++LD A +DAG + L + L+DL+ V + + + + Sbjct: 161 LETVDADADRLSRLITELLDAARIDAGRLTLKRGPVRLDDLIGRVLRGVTAGGGDGRWAL 220 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFI-FSVKNNG 727 + G++ D RL+Q+ + ++ NA S + + D + + + G Sbjct: 221 DL---GRVPVVWGDDDRLVQVVTNLVENAQRHGHGLASLAVAEEVVDGRPGVRLHLVDRG 277 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE+M VF+RF + G G GLG+ IV ++ HGG V I ++ G I+ Sbjct: 278 PGIPEEMRMRVFSRFWRS---GPGAGSGLGMYIVRGIVDQHGGRVDIDDAEGGGADISVW 334 Query: 788 IPSKE 792 +P E Sbjct: 335 LPVNE 339 >gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 953 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + + A++ K+ F+ ++S+E+R+PL ++G LL+ + L Sbjct: 544 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 600 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q + + S SS LL ++NDILD + + L V+ ++AT Sbjct: 601 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 660 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + +IRI+ IS + D R QI ++ NA+ F+ +G+ I L+ G Sbjct: 661 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 720 Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + V+++G IP+DM +VF F V ++R + G GLGL IV S ++ GG ++I Sbjct: 721 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 780 Query: 775 SSSDEGVTTINC 786 S + TTI C Sbjct: 781 DSEEGAGTTIAC 792 >gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 885 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 98/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 444 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G + +L + L + + ++T+ +R L E Sbjct: 445 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 504 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 620 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 679 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 724 >gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 617 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGGGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G ++I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTINIQS 567 >gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 763 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ + E ++ +K+ + VS+ELR+PL I G+ ++L+ S +L + Q ++ Sbjct: 374 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL---RVQAIDA 430 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V DILD +++ G ++L+ + + L +V + T I ++ Sbjct: 431 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 490 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S D +RL Q+ S ++SNA+ F+ G V + A D+ + +V + G I Sbjct: 491 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 550 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + VF+ F ++ RRG+GLGLSIV + LHGG V + S+ TT ++P Sbjct: 551 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 610 Query: 790 S 790 + Sbjct: 611 A 611 >gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 641 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 130/248 (52%), Gaps = 16/248 (6%) Query: 554 ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+TE +A R+A+ + K+ F+ +S+ELR+P+ ++G LL+ + + N +Q +Y Sbjct: 241 AMTELQQAHRQAETASQAKSDFLAMMSHELRTPMNGVLGMLQLLEET---AQNGEQQEYT 297 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E S+ LL+++NDILD + ++AG M L+ S L LL + + ++ Sbjct: 298 EAALESTGHLLDVINDILDFSRIEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLR 357 Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI---FSVK 724 + D L V +D RL Q+ S ++SNA+ F+ +G + + R GD++ +V Sbjct: 358 LEGDEVLAGKVTRSDPTRLRQVLSNLISNAVKFTQEGGVTVTVSVRPVRGDWLDLSIAVA 417 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-- 780 + G IPE S+F F RR G GLGL+I + GG++S+ S ++ Sbjct: 418 DTGIGIPEAKRSSLFKAFSQIDSSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDAGS 477 Query: 781 VTTINCRI 788 V T++ R+ Sbjct: 478 VFTLSLRL 485 >gi|158319155|ref|YP_001511662.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158139354|gb|ABW17666.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 463 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621 K +E+KN F+ VS+ELR+PLT+I G+ LK S + K+ + + I S L Sbjct: 237 KKEELKNDFISSVSHELRTPLTSIKGWAITLKHSP----DDKEILADGLNIIETESDRLA 292 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 N+V ++LD + +G + L + +N++++ +K+ + + +NI+ +VI++ + F Sbjct: 293 NMVEELLDFSKFVSGKISLEKKEVNINEIIDHIKKQLTPRAMRDNIKFEVIAEEPMPIFC 352 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 +D RL Q+F +L NA F+ G +V L A+ +G+FIF++K+ G I + V + Sbjct: 353 SDGNRLKQVFINVLDNAFKFTPAGGSVSLVASYRDGNFIFNIKDTGHGISAEDLPRVKEK 412 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F R G+GLSI + I+L G I S T I +P E Sbjct: 413 FYKG--RTSLSQNGIGLSICDEIISLMKGTFEIKSQLNKGTEIIITLPLGE 461 >gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 955 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + + A++ K+ F+ ++S+E+R+PL ++G LL+ + L Sbjct: 546 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 602 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q + + S SS LL ++NDILD + + L V+ ++AT Sbjct: 603 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + +IRI+ IS + D R QI ++ NA+ F+ +G+ I L+ G Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 722 Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + V+++G IP+DM +VF F V ++R + G GLGL IV S ++ GG ++I Sbjct: 723 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 782 Query: 775 SSSDEGVTTINC 786 S + TTI C Sbjct: 783 DSEEGAGTTIAC 794 >gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Rhodospirillum rubrum ATCC 11170] Length = 620 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 3/242 (1%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E AL + +A+ K F+ ++S+ELR+PL IIGF+D+L G+L +Q Y Sbjct: 364 EAALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIGFSDMLANGIHGALADRQQDYAR 423 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ S+ LL+L+NDILD+A +++G L+ L ++ ++ + ++ E + + Sbjct: 424 DINLSALHLLDLINDILDVAKIESGGYLLHERPCNLAAIIRAAERMLGPRVREKGLVMDT 483 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI 730 + +AD + + Q+ +LSNA+ F+ +G + + + G + V + G I Sbjct: 484 VCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLVVGDTGPGI 543 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + V F V G GLGL + ++ + H G + + S T ++ + Sbjct: 544 PAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQGTRVSVTL 603 Query: 789 PS 790 P+ Sbjct: 604 PA 605 >gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] Length = 587 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1112 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ AE L + E KA K+ F+ ++S+E+R+P++ IIG D+L + S + Sbjct: 557 DITERKNAEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASE---SAD 613 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + V+ S+ L ++NDILDL+ V+AG + L + L L+ V + + Sbjct: 614 QSRKDLVDMTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQAR 673 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718 I +KV +D +L +V D RL Q+ ++SNA+ F+ G +I A D Sbjct: 674 NQGIALKVDADSRLPEYVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDEHKAT 733 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V+++G I D S+F+ F + + +G GLGL+I + + + GG + + S Sbjct: 734 VEFQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQS 793 Query: 777 S 777 + Sbjct: 794 T 794 >gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Enterobacter sp. 638] gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 442 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + V ++ SS++LL +++DILD + +++ +K+ S +++N + + Sbjct: 502 ---KGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMP 558 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + + D RL Q+ S +LSNA+ F+ G +IL +R GD+ Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDVG-CIILHVSR-AGDY 616 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + +++ G IP +F+ F QR +G GLGL+I E I++ G +S+ + Sbjct: 617 LSIRIRDTGVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDT 676 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 677 EPGMGSQFTIRIP 689 >gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1209 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 38/280 (13%) Query: 544 NVTDSVRAERALTEKNEAL--------------RKADEIKNSFVQHVSYELRSPLTNIIG 589 +VT + E+ L +KN+ L R+A K+ F+ ++S+E+R+P+ I+G Sbjct: 510 DVTALMEKEQDLEQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMG 569 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 T+L ++L +Q +Y+ I SS LL L+NDILD + ++AG + L Y L + Sbjct: 570 MTELAGNTEL---TPEQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRE 626 Query: 650 LLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++ S+A H+ + ++V D + G F D RL Q+ ++ NA+ F+ +G Sbjct: 627 TVHNAVYSVAMLAHQKGVELVVRVEPDMEDG-FKGDPDRLRQVLVNLVGNAIKFTQQGEV 685 Query: 708 -----------VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 ++ AARD G +F V + GS I D + +F FV +R Sbjct: 686 QVEVRLAAAEEMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSRR 745 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGLSI + + G + + S +T + +P Sbjct: 746 KYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLP 785 >gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRTD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1067 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 14/244 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE AL + EA A+ K+ F+ +S+ELR+PL I+GFT +L ++ +L Sbjct: 580 DITERKQAEEALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVL--ARNSALK 637 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +E IS S LL+L+NDIL+++ ++AG N S+ L LL+ ++ + + Sbjct: 638 EEEKTNLEIISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAE 697 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---------VILKAA 713 +++ S + ++ D +L Q+ ++ NA+ F+ +G V L++ Sbjct: 698 AKGLQLIFDSASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGGVTLRVKSGGKVPLESP 757 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + F V++ G I D ++F F + R +G GLGL I + F+ L GG + Sbjct: 758 K-MATITFEVEDTGPGIALDEIDNLFEAFGQTETGRKSNQGTGLGLPISKKFVELMGGEI 816 Query: 773 SISS 776 +SS Sbjct: 817 RVSS 820 >gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] Length = 942 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 132/247 (53%), Gaps = 18/247 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E E + A++ K +F+ H+S+++R+P+ IIGFT + + + + + +E I Sbjct: 553 MAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTGI---AMKNNPSDEVKNCLEKID 609 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATK--MHENNIRIKV 671 SS LL+L+ND+LDL +++G K+NY+ V D+ N ++ TK + +I K+ Sbjct: 610 ESSEHLLSLINDVLDLTRIESG--KVNYNP-VPADVKNITDSALDITKGFLMNRDINFKI 666 Query: 672 I-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD----FIFSVK 724 + K+ + +AD RL + ILSNA+ F+ G T+ +A GD + + Sbjct: 667 QREEAKIPNVLADPARLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMRYRIS 726 Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G + E+ K VF F + R Q GVGLG++IV+ ++++ GG +S+ S T Sbjct: 727 DTGIGMSEEFTKEVFEEFAQEDSGVRTQYHGVGLGMAIVKKYVDMMGGTISVHSKKHEGT 786 Query: 783 TINCRIP 789 T IP Sbjct: 787 TFTVDIP 793 >gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1] gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1] Length = 935 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 35/297 (11%) Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 CS Y+ ++G L+ LS S Y P+ + F +++ Sbjct: 401 CSDYFESAEGRHLY--------------------LSCSPTRYKGEPV----LLCAFSDIS 436 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + E AL + A A+E K F+ +S+E+R+PL ++G +LL + L+++Q Sbjct: 437 ARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRT---VLDAQQ 493 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y+ I SS+ LL L+ D+LD++ ++AG + L S DL+ EV Q + Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720 +++ D +L + D R+ QI + +LSNA+ F+ G V+L+A N D + Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGR-VVLRARLLNRDGERSCLL 612 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G I E +F F + H G GLGL I + L G + + S Sbjct: 613 WQVSDTGKGIAEQDQPFIFEPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVS 669 >gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1] gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1] Length = 1231 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 2/182 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 AE LTE A K+ F+ +S+E+R+PL IIGF++++ + G++ N + +Y Sbjct: 984 AEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIGNERYKEY 1043 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S +++LVND+LDL+ ++AG + L++S + ND++ E + + + + I Sbjct: 1044 LKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSANDVVRECVALMQPQANRERVII 1103 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728 + + S VAD + L QI +LSNA+ F+ G VI+ A NG+ + V++ G+ Sbjct: 1104 RASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVIVSTALEPNGEVVLRVRDTGT 1163 Query: 729 SI 730 + Sbjct: 1164 GM 1165 >gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 598 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ++RK ++I+ FV +V++EL++PLT+I GF + LK + + ++++ I + L Sbjct: 368 SVRKLEQIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIED-TTVAVKFLDIIDIEAERL 426 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+NDIL L+ ++A + I L +++EV + + + NI ++V + Sbjct: 427 YTLINDILQLSEIEAMRKDDSVMEIDLRQIIDEVVLILKSSADKKNILLEVSTVPSHIQI 486 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +A R R+ Q+ ++ NA+ ++ + + +KA ++NG+ + S+K+ G IPE +F Sbjct: 487 IASRNRIKQMLINLIDNAIKYNVENGKICVKAEKNNGNTVISIKDTGIGIPEMHHSRIFE 546 Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +G+ R G GLGLSIV+ INL+ G + I S T ++P Sbjct: 547 RFYR-VDKGRSRNMGGTGLGLSIVKHIINLYSGDIHIISEPGKGTEFIVKLP 597 >gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 869 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 6/242 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--IFSVKNNGS 728 + D + V D RL Q+ + +++NA F++ GS ++ ++ IF V++ G Sbjct: 748 RMPDNEKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIF-VEDTGV 806 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 I E+ + +F RF + Q G GLGLSI ++ + G + ++S T RI Sbjct: 807 GISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRI 864 Query: 789 PS 790 P+ Sbjct: 865 PN 866 >gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|332526490|ref|ZP_08402602.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332110758|gb|EGJ10935.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 669 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 166/358 (46%), Gaps = 32/358 (8%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 E + +++G V DGRI + NPA W P + + AT + W Sbjct: 230 EVLRRMADGAGVVDADGRIVVCNPA----WAAMLGAAGPAQAL-GLPATA---WLAEPSW 281 Query: 498 DLFAAIIT---SFDDE----RKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 D AA + + E R++ GTL S +V + P A+ L +V+ Sbjct: 282 DTLAARLAQAGTLPAEDLSLRRADGGTLATEASFAVFARADAGAP-ARVQLVLRDVSARR 340 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQ 608 ER L EA A K+ F+ ++S+E+R+P+ I+G T L L+T L+ +Q Sbjct: 341 ETERTLVAAREAAEAATRAKSDFLANMSHEIRTPMNAILGMTALALRTE----LDPRQRD 396 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+E A++ LL +VN ILD + ++AG ++L + L+ +L+ V +A + H+ + Sbjct: 397 YLEKTRAAAQSLLGIVNVILDFSKIEAGRLELEHDEFELDAVLDGVAAIVALQAHDRGLG 456 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722 + +S+ V D RL Q+ + NA+ FS +G ++ A D D F Sbjct: 457 FLLDVSEQVPRRLVGDALRLSQVLVNLCGNAVKFSERGEVLVRVEALDAADPHLQRLRFV 516 Query: 723 VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V + G + P+D+ + +F F RR G GLGL+I + GG +++ SS Sbjct: 517 VHDEGIGLSPQDL-ERLFRPFSQVDASTTRRYGGTGLGLAISRQLVQAMGGDIAVRSS 573 >gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1322 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 13/232 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + +A A+ K+ F+ ++S+ELR+PL I+GFT ++ S+ SLN + +++ I+ Sbjct: 834 LEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVM--SRDISLNQEHQSHLDIIN 891 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ND+L+++ ++AG +KLN S+ L LL ++ + K + + Sbjct: 892 RSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLKADFKELTLIFDCA 951 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------IFSVKN 725 + ++ +D +L Q+ +L NA+ F+ KG + +N D+ +F V++ Sbjct: 952 QDVPQYITSDEVKLRQVLLNLLGNAIKFTQKGKVTLRVRKINNKDYGDPISTSLLFEVED 1011 Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G+ I PED+ K +F FV + G GLGL+I + F+ L G +++ S Sbjct: 1012 TGTGIAPEDI-KQLFTPFVQARNTDAHEGTGLGLTISQKFVKLMQGEITVES 1062 >gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1162 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 40/305 (13%) Query: 522 SDSVLEYSIIPL---PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 S V ++S PL P+ + + V+VT AE AL + A A+ K+ F+ ++ Sbjct: 627 SARVWDFSSAPLGSLPDGRRAVIRMAVDVTGRKEAEAALLREKGAAEAANLAKSEFLANM 686 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+PL +G LL+T+ +L+ +Q Y+ S+ L L++D+LDL+ V+AG Sbjct: 687 SHEIRTPLNGSLGMLQLLQTT---TLDEEQQDYLTSAITSARRLTQLLSDVLDLSRVEAG 743 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695 + L + L + ++ E + + + D +L + V D RL QI ++ Sbjct: 744 RLALRAAPFALEGVAGSIRDIFLLPAREKELELDIRLDPRLPARLVGDEARLRQIAFNLV 803 Query: 696 SNAMDFSSKGSTVI-------LKAARDNGD----------------------FIFSVKNN 726 NA+ F+ GS + AAR G+ + V++ Sbjct: 804 GNAIKFTDTGSVTVELTPLGLPPAARPAGNAAGDATSGPAGNTPAHRPAQLRLLLEVRDT 863 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE + +F F + +H + G GLGLSIV + L GG +S+ S+ T I Sbjct: 864 GIGIPESHLERIFEPFSQLDGSHVRRHGGAGLGLSIVRRLVALMGGELSLESTPGTGTNI 923 Query: 785 NCRIP 789 +P Sbjct: 924 FISLP 928 >gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4] Length = 527 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 23/355 (6%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I+++ G+ + P G + L N F+ L++ + P +++ RY+ D+ Sbjct: 186 IENMGSGLLLIDPRGFVVLMNKTFKELFEVD-----PSNYLKK------RYHEAIQHEDI 234 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 + F E K + L L + + P + ++D + + Sbjct: 235 IKVVEEVFMTEEKVRKQLLLPLHLERKHFEVYGAP-------IIGISDEWKGILLVFHDI 287 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GF++ L L ++ + ++ + S Sbjct: 288 TELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGALEDRDTLEY-FLNIMLTESDR 346 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+LDL+ ++ KL+ ST L+ LL EV + K E I+++ +L + Sbjct: 347 LQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-T 405 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R Q+F +++NA+ ++ G V + + + V++NG I +F Sbjct: 406 LEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKEERDEITIKVQDNGVGIAASELPRIF 465 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF + A G GLGL+IV+ + H G + + SS EGV T SKE Sbjct: 466 ERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESS-EGVGTTFIVKVSKE 519 >gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 826 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 19/240 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL E ++A + A+ K+ F+ +S+E+R+P+ +IG TDLLK + L+ Q +VE Sbjct: 294 QALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTH---LDPHQQDFVET 350 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-V 671 I S LLN++NDILD + +++G ++L ++ + E + +K + + + Sbjct: 351 IRTSGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYL 410 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------D 718 I G D RL QI +L NA+ F++ G ++ +ARD + Sbjct: 411 IEPGTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLSLHE 470 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F VK+ G I + + +F F + ++ + G GLGL+I + L GG + + S Sbjct: 471 LLFEVKDTGIGIAPEHQQKLFQSFCQLDSSITREYGGTGLGLAISKQLCELMGGTIWVES 530 >gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli E24377A] gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E24377A] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + +D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein [Geobacter bemidjiensis Bem] gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 1362 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L + + L +A +K+ F+ ++S+ELR+PL +++ + +L L + Y Sbjct: 567 RHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGGSRLTEDEKGY 626 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + LL+L+NDILDLA +++G ++ T+ L + EV ++ E I I Sbjct: 627 LSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEVVDGLSVLAREKGIAI 686 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + L + V D +RL Q+ ++ NA+ F+++G+ V ++ + +F+ V++ G Sbjct: 687 SLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAEGA-VTVRLGAEGEEFLVEVEDTGIG 745 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I +++F+ F R G GLGL+IV+ L GG VS+ S + R Sbjct: 746 IAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGKGSVFTLR 805 Query: 788 IP 789 +P Sbjct: 806 LP 807 >gi|42524991|ref|NP_970371.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39577202|emb|CAE81025.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 688 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 14/288 (4%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEI 568 E+ L G L L++ ++ +S + Q+++ +++ S A + L E+ + L A Sbjct: 239 EKNQLFGLLLLMNKALRHFSAEEVRFVQSLVNTLSIAMSRNALHKELEERIQQLHTAHRK 298 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL---LNLVN 625 KN F+ +S+ELR+PL I G DLLK S + K +Y + + A L + LV+ Sbjct: 299 KNDFLATLSHELRTPLNIIKGGLDLLKGS-----DPKSREYHDALDAIERNLNHEIQLVS 353 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D L+++ + G KLN +V+ +L+ V +S+ + H NI ++ V D Sbjct: 354 DTLEISRITTGKTKLNLKKVVVQELIQSVMESLESAAHAKNISAQLTCSEAATQAVVDPD 413 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 R QI +LSN++ F+ G + + F SV++ G I + VF +F Sbjct: 414 RFRQILWNLLSNSIKFTPPGGRLHVTCETHESQFSVSVQDTGQGIESENLPYVFEKFWQE 473 Query: 746 AHRGQRRGVG--LGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789 R+ +G LGLSI + LHGG + + S D+G TT ++P Sbjct: 474 DSGMNRKRMGLGLGLSIAKHMTELHGGSIEVQSPGKDQG-TTFRIQLP 520 >gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102] gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] Length = 574 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 90/335 (26%), Positives = 158/335 (47%), Gaps = 42/335 (12%) Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526 W+T P + +A +R +N +DL A + T +DE L +L L + V Sbjct: 265 WRTSRAIAEPVITVTQVAEQVARKHN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 318 Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E + + L + E A + K+ F+ +VS+ELR+PL Sbjct: 319 ERT-----------------------KELQQAKELAEAASKAKSVFLANVSHELRTPLNA 355 Query: 587 IIGFTDLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 +IG + LL+ + LG L++ +E I+++ LL+L+N+ILDL+ ++AG M L T Sbjct: 356 VIGLSQLLEDDATDLG-LSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPET 414 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L+N V ++ + +N ++V D +LG+ AD+ R+ Q+ +LSNA F++ Sbjct: 415 FEIATLINNVVLTVKPAIEKNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFTTN 474 Query: 705 GS-TVILKAARDN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 G T+ +K ++ G F+V + G + + +F F ++ G Sbjct: 475 GKVTLTVKREKEELRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGT 534 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I F + GG + + S +T R+P Sbjct: 535 GLGLAISRHFCQMMGGEIIVKSQPGLGSTFTIRLP 569 >gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] Length = 950 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ VR E++L E A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 443 VLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 502 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S V ++ SS++LL +++DILD + +++ +K+ +++ + + + Sbjct: 503 ---SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLS 559 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 560 LVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVAQGYL 618 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G IP +F+ F + QR +G GLGL+I E IN+ G + + S Sbjct: 619 AFRVRDTGVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 679 PGMGSQFIVRIP 690 >gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 877 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 133/250 (53%), Gaps = 11/250 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N + +L +V + + E+AL + +A K+ F+ ++S+E+R+P+ IIG +++L Sbjct: 345 NDRYVLIVRDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVSEML 404 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + S SL +Q +V+ I +S+ LL L+NDILD + ++ +KL+ T L ++ E Sbjct: 405 RES---SLPKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTMVEET 461 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712 +A + + V + + V +D RL Q+F+ +L NA+ F+ G I ++A Sbjct: 462 ASMVAISASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHGYIRISVRA 521 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 GD + ++++ G IPED + F V+++ + +G GLGLSI +S ++ Sbjct: 522 EPKPGDTSSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSITKSLLS 581 Query: 767 LHGGHVSISS 776 L + + S Sbjct: 582 LFNSELEVVS 591 >gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] Length = 565 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 135/260 (51%), Gaps = 10/260 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592 +Q +L + ++ + A+ E+ ++A+E + + FV +++ELR+PL ++G + Sbjct: 169 SQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ ++L ++ Q + V +S S L ++ND+LD + ++AG+++L T L DL N Sbjct: 229 LISDTEL---SNSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLKN 285 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + + E I+ V ++DG F D +R+ Q+F ++ NA+ F+ +G V ++ Sbjct: 286 TIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQGH-VSVE 344 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769 N FIFSV+++G I + K++F F + R G GLGL+I L Sbjct: 345 IKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLAALMR 404 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + +SS TT +P Sbjct: 405 GDIEVSSIVGSGTTFTISLP 424 >gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701] gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701] Length = 549 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 33/286 (11%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQH 575 P+ + F ++T+ RA+ +T+ + L + A F+ Sbjct: 101 PDPSLVFVFRDLTEITRAQDQITKARDTLEQDVAARTLELQLARDEALAATGAMGQFLST 160 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL +IG +DLL + SL+ +Q + V I++S+ +LL L+NDILDL+ ++A Sbjct: 161 ISHEIRTPLNAVIGMSDLLLDT---SLDGQQQELVHTINSSAELLLRLINDILDLSKIEA 217 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694 MK++ T L L+ + + + + + ++ SD + + D R+ QI + Sbjct: 218 RKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNL 277 Query: 695 LSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SN 745 L+NA+ F+S GS + L ++ D + V + G+ I ED +F F + Sbjct: 278 LNNAIKFTSHGSVDVKIGWRPLTSSAIELDLV--VADTGTGISEDFLSKIFQDFTQEHNQ 335 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 AH G GLGL+I + L GG + S + + R+P K Sbjct: 336 AHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRFHVRLPLK 381 >gi|116493791|ref|YP_805525.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|227534582|ref|ZP_03964631.1| sensor histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631046|ref|ZP_04674077.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065367|ref|YP_003787390.1| signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|116103941|gb|ABJ69083.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334] gi|227187831|gb|EEI67898.1| sensor histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527329|gb|EEQ66330.1| signal transduction histidine kinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437774|gb|ADK17540.1| Signal transduction histidine kinase [Lactobacillus casei str. Zhang] gi|327381060|gb|AEA52536.1| two-component sensor histidine kinase [Lactobacillus casei LC2W] gi|327384235|gb|AEA55709.1| two-component sensor histidine kinase [Lactobacillus casei BD-II] Length = 396 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + + Sbjct: 148 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EEELLKYTHTAYLKAKQMKV 206 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+ + V + KLN + +L ++ S + H+ ++RI V + A Sbjct: 207 LVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPDPLMMEA 266 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L ++F+ ++ NA+ + G + L A R + + V N+G+ IP D +F+RF Sbjct: 267 DTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLFDRF 326 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + + G GLGL+I +S I LHGG++ SS E +T+ +P K Sbjct: 327 YRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-ITSFVIHLPLK 376 >gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227] Length = 880 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 370 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 486 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 544 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 545 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 604 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 605 VDSEPGMGSQFTVRIP 620 >gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1155 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 17/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 + R + EK L + + K+ F+ ++S+ELR+PL +++ + LL +K +L KQ ++ Sbjct: 446 SRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYENKESNLTEKQVEFA 505 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +S + LL L+NDILDL+ ++AG + L + + DL V++++ E + Sbjct: 506 RTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVERNLRHMAEEKGLTFD 565 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------- 718 + + S + DRQRL QI +LSNA+ F+S+GS + LK R + Sbjct: 566 IELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQGS-ICLKIGRPYSEAKLMRSDLDIR 624 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I D K +F F R+ G GLGLSI + GG + + Sbjct: 625 NTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSISRELVRCLGGEIQL 684 Query: 775 SSSDEGVTTINCRIP 789 S + +T +P Sbjct: 685 ESREGYGSTFTIYLP 699 >gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 955 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + + A++ K+ F+ ++S+E+R+PL ++G LL+ + L Sbjct: 546 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 602 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q + + S SS LL ++NDILD + + L V+ ++AT Sbjct: 603 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + +IRI+ IS + D R QI ++ NA+ F+ +G+ I L+ G Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 722 Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + V+++G IP+DM +VF F V ++R + G GLGL IV S ++ GG ++I Sbjct: 723 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 782 Query: 775 SSSDEGVTTINC 786 S + TTI C Sbjct: 783 DSEEGAGTTIAC 794 >gi|146278988|ref|YP_001169147.1| PAS domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557229|gb|ABP71842.1| PAS domain containing protein [Rhodobacter sphaeroides ATCC 17025] Length = 520 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 24/296 (8%) Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAI 237 L + L + + ++W +++WAN +Y K+ E + + Sbjct: 145 LAQRALVEELDQLRATVSQAPLMMWRESGRAEVIWANAAYLLEAAKRLDPGEDLSWPLP- 203 Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID--- 294 +LF+ + + ++ ET G + +++V G A+ Sbjct: 204 ----RLFE---RAATAQGAPGQRQKLET-----QGAARWFELVGFAEGEGRLLFALPADA 251 Query: 295 -VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353 V E ++ D + + +L + +AIFDQ+R L N + ++L + LA PS Sbjct: 252 AVQAEASLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTSLPPDMLALQPSLF 311 Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGG 411 LE LR +PE ++ +W+ I + K SS + +TW LP+GQT VI +P G Sbjct: 312 SFLEALRDRQMIPEPKDYPSWRRQILELEKAASSGLYTETWSLPSGQTYRVIGRPHPNGA 371 Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 MFE+++ ++ +Y +++ +D + E +AVF G + ++N A+ +LW Sbjct: 372 LALMFEDISTEMSRTRRYRADLELGQAVVDAMDEAIAVFSQAGELVMTNAAYGALW 427 >gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 657 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 13/236 (5%) Query: 545 VTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + D R +++ E A KA+E +K++F+ ++S+E+R+PL +I+GF +L+ G+ Sbjct: 403 IEDKKRLQQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEETRGN 462 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N K +YV IS +S +LL L+NDILDL+ +++G N+ + DL+ +A Sbjct: 463 ENLK--EYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQIL---DLVPHCANIVAGF 517 Query: 662 MHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718 IK+ + +A D RL Q+ ++ NA+ F+ KGS ++ +K + + Sbjct: 518 QTNIAKGIKLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQKGSIILEVKPNNVSQE 577 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +IFSV + G IP + K VF RF N +G GLGLSI + I GG + I Sbjct: 578 WIFSVTDTGCGIPPEKQKVVFERF--NKLDEYAQGTGLGLSICQITIENLGGRIWI 631 >gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 869 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 6/242 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--IFSVKNNGS 728 + D + V D RL Q+ + +++NA F++ GS ++ ++ IF V++ G Sbjct: 748 RMPDNEKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIF-VEDTGV 806 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 I E+ + +F RF + Q G GLGLSI ++ + G + ++S T RI Sbjct: 807 GISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRI 864 Query: 789 PS 790 P+ Sbjct: 865 PN 866 >gi|22299374|ref|NP_682621.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] gi|22295557|dbj|BAC09383.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] Length = 714 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 7/244 (2%) Query: 549 VRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 VRA A L +K + L + + IK+ F+ VS+ELR+P+ N+ +LK + + +Q Sbjct: 467 VRARTAELEQKMQELERLNAIKDDFLSTVSHELRTPMANMKMAIHMLKQF---ATDDRQK 523 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y++ ++ L+ND+LDL ++AG ++ I L+ L V + +M + Sbjct: 524 RYLDILANECNRETELINDLLDLQRLEAGRSQIQQEVIDLDSWLPTVLEPFRNRMQQRQQ 583 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++V+ L +++R L +I +++++NA +S G+ ++++ GD + +N Sbjct: 584 SLEVLRPATLPPLLSNRHALARILAELINNACKYSPAGAQIVVRFDPIGGDRLQIQVSNP 643 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 S IP + +F +F + NA Q+ G GLGL++ + + G +S S+ G+TT Sbjct: 644 SEIPSEELPRIFEKFYRIPNADPWQQGGTGLGLALTQKLVEQLQGDISADSA-AGMTTFT 702 Query: 786 CRIP 789 +P Sbjct: 703 LTLP 706 >gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21] gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21] Length = 1323 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 5/231 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K++F+ +S+ELR+PL I+G+ +LK +L Q Q +E + LL+L+ Sbjct: 861 ANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD--NLTDTQRQQLEIVRGCGEHLLSLI 918 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 ND+LD+ ++A M++ + L+ LL +V K E ++ + L V D Sbjct: 919 NDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEKDLGFRYEELTSLPRAVRGD 978 Query: 684 RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 +++L Q+ +LSNA+ ++ +G TV + +G F+ + + G I D +F F Sbjct: 979 QRKLKQVLLNLLSNAVKYTRRGRVTVRVDYELSSGTFVCEITDTGIGIAPDKLNIIFEPF 1038 Query: 743 VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V A GQ R G GLGLSI + L G V++ S +T +P E Sbjct: 1039 VQLADAGQVREGTGLGLSITRRLVTLMQGEVAVESEPGFGSTFRVELPLPE 1089 >gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] Length = 848 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 129/252 (51%), Gaps = 22/252 (8%) Query: 550 RAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R ++ E + AL KA D K+ F+ +S+E+R+P+ ++G +LL + L+++Q Sbjct: 256 RLQQKTKETDLALTKAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRT---DLDTRQ 312 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + I S LL ++NDILD + +DAG M L L D +V +++++ E + Sbjct: 313 RTFTDVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSSRVVEKD 372 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD--- 718 I + V I+ G + D R+ QI + ++ NA+ F+ +G ++ +D +G+ Sbjct: 373 IELAVRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQGHVMVEINWKDVEPEDGEGAS 432 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 SV + G IP D +VF++F V + + G GLGL+I + L GG Sbjct: 433 SRRLALSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRLVELMGGQ 492 Query: 772 VSISSS-DEGVT 782 + + S+ EG T Sbjct: 493 IKLESTVGEGST 504 >gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii Sb227] gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83] gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 898 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 141/256 (55%), Gaps = 11/256 (4%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 Y+ P P ++ F ++T+ ++++ L E +A A++ K+ F+ ++S+E+R+P+ + Sbjct: 486 YAFCPEPGLFAVV-FNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGV 544 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G T LL+ ++ L ++Q +Y++ I S+ LL+L+NDILDL+ +++G ++L ++ L Sbjct: 545 VGLTQLLRFTE---LTTEQVEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSL 601 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + ++ + +++ E ++IK L V D+ R+ Q+F +L NA+ F+ +G+ Sbjct: 602 RKAIQDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGT 661 Query: 707 TV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 IL+ + +V + G + ++ + +F+ F RR G GLGLSI Sbjct: 662 ITIAVSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSI 721 Query: 761 VESFINLHGGHVSISS 776 L GG +++ S Sbjct: 722 CRKLAELMGGAITVES 737 >gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti 1021] gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 917 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 7/265 (2%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +P+ T+ + ++T + + L A+E K+ F+ +S+ELR+PL IIG+++ Sbjct: 385 IPDGGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + + ++ I+++ LL+L+NDILDL+ ++A M++ T + DLL Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +V ++A M N + LG +D+ +L Q +LSNA F++ G V L+ Sbjct: 505 DVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563 Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 R D +F V + G + + + +FN F R G GLGLSI SF Sbjct: 564 RREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 + GG V++ S + +P++ Sbjct: 624 MIGGVVTVESEVGKGSVFTMEVPAQ 648 >gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 784 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 14/235 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E++EA+R A+ KN F+ +VS+ELR PL +++G+ +LL + L + +Q +YV + + Sbjct: 246 ERDEAIR-ANHAKNQFLANVSHELRIPLQSVLGYANLLTDTPL---DQEQREYVNTLLNA 301 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S L +++ND+LD+++++AG ++L L + LN++ + ++ E + ++V D Sbjct: 302 SESLSSIINDLLDISSMEAGKLELEAIPFDLRETLNDLIHMLGSRAREKGLALEVRVDEN 361 Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI- 730 L + D R+ Q+ +LSNA+ F+ G S IL +V++ G I Sbjct: 362 LPWALTGDPVRIRQVLLNLLSNAIKFTDSGHVLISIEILGRKEGKVRLRLAVEDTGVGIN 421 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 PED+ V+ +V R QR+ G GLGL+I ++L GG + + S EG T Sbjct: 422 PEDI-PLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVDLMGGSMDLESRPGEGST 475 >gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 110-3] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 1057 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 17/235 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYI 613 L +A A K+ F+ +S+ELR+P+T +IG DLL LG+ + S Q +Y+E + Sbjct: 667 LQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGMIDLL----LGTTVTSDQRRYLETL 722 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +S+ LL ++NDILD + ++AG + + + L LL++V A + + ++V Sbjct: 723 HSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFAPAASQKGVELRVRQ 782 Query: 674 DGK------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI--FSV 723 + D RL Q+ ++ NA+ F+ GS + A+ D G ++ F V Sbjct: 783 PERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKFTPAGSIELRAEAQREDGGTWLLRFEV 842 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G IP D+ +F F RR G GLGL+I + + + GG + + S Sbjct: 843 EDTGIGIPPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVTMMGGEIGVRS 897 >gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L] gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L] Length = 587 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 928 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 10/247 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVT+ E+ L A A K+ F+ +S+E+R+P+ +I+G ++LL+ + SL+ Sbjct: 263 NVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEET---SLD 319 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q YV+ + +S +LL ++NDILD + ++AG + L L DL+ + + + K Sbjct: 320 FDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRILGLKAQ 379 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKA--ARDNGD 718 E +++ ++ V D RL QI +LSNA+ F+ G IL D Sbjct: 380 EKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHGEVTLHILPGPLPADKET 439 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +V + G IP+D +SVF F R+ G GLGL+I + I L G + I S Sbjct: 440 ILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMDGGIRIES 499 Query: 777 SDEGVTT 783 ++ TT Sbjct: 500 NEGAGTT 506 >gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 919 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 19/241 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ E L E E D +K++F+ ++S+E+R+PL I+GF+ LL T L Sbjct: 680 DITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDL--- 736 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ Sbjct: 737 -EERREYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKV 795 Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++++ D S V+DR RL Q+ S ++NA+ F+S GS + ++ Sbjct: 796 PQG---VELVFDPHPSECSVVSDRNRLHQVISNFVNNALKFTSSGSIRVGYEEKEEC-VE 851 Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G IP +F RFV + H G GLGLSI +S + GG + + S Sbjct: 852 FYVRDTGIGIPAGQLPHIFERFVKLNTFIH-----GTGLGLSICKSIVEQLGGVIGVDSE 906 Query: 778 D 778 + Sbjct: 907 E 907 >gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1226 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KNEA R ++K F+ ++S+E+R+P+ +IG DLL +KL + +Q YV+ + SS Sbjct: 705 KNEAERSL-KVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL---DEEQRSYVKTVKRSS 760 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LLN++NDILDL+ ++AG M L+ + + ++ ++ + + N + L Sbjct: 761 ETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQANSKNNELTYHLGSDL 820 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIP 731 +FV AD+ RLLQ+ S + SNA+ F+ G +++I K + N I VK++G I Sbjct: 821 PTFVIADQTRLLQVLSNLTSNAIKFTENGTIRVEASLISKRGKFNRIRI-EVKDSGIGIS 879 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +FN F V + R G GLGL+I + +L G + + S+ Sbjct: 880 QQNINLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDST 927 >gi|159045973|ref|YP_001534767.1| putative PAS/PAC sensor protein [Dinoroseobacter shibae DFL 12] gi|157913733|gb|ABV95166.1| putative PAS/PAC sensor protein [Dinoroseobacter shibae DFL 12] Length = 434 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 28/295 (9%) Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251 ++ + + + ++W +D G + WAN Y TE KL + + Sbjct: 64 LAQLRATVEHIPLILWRQDNDGALTWANKPYIDLTE--------------KLHPDRAGRW 109 Query: 252 MISSSALEKNFCETVST--------LEHGNNKSYKI--VRVLNSFGEAGIAID--VSKEI 299 + +K+ + +E G + +++ RV + + ID V E+ Sbjct: 110 PMPHLFKQKSLAHPDTPGHRRISIDMEDGEKRWFEVQGFRVQDEILYSATPIDMTVKAEV 169 Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359 ++ + + +L V +AIFD+ R L N + +L ++ +L+ P E+L+ L Sbjct: 170 SLRNFVQTLTSTFAHLQVGLAIFDKRRQLVLFNPALTDLTTLEPEWLSARPGLSEVLDRL 229 Query: 360 RSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417 R N LPE ++K W+ + + K SS T ++TW LP GQ ++ + GG FE Sbjct: 230 RDKNMLPEPKDYKEWRNRLTGLEKAASSGTFEETWALPTGQNYRILGRPHHDGGIALTFE 289 Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 +++ +V L ++ + +++ +D L E +AVF +G + LSN A+ LW EN Sbjct: 290 DISSEVSLTRRFRSEIELGQTALDTLEEAIAVFSENGTLVLSNKAYSELWDVSEN 344 >gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 706 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 10/247 (4%) Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L E+NE LR+ A K+ F+ ++S+E R+PL I+G+T++L G LN Q Sbjct: 456 LAEQNEMLRRQAIQVEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGELNPAQK 515 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + I ++ LL ++N+ILD+ ++AG M LN S + +LL EV + + + + Sbjct: 516 RNLTRIDSNGRHLLEVINEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKL 575 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726 + ++ + +DRQ++ QI +LSNA+ F+ +GS V + SV + Sbjct: 576 TVSAHLGPRVPAVYSDRQKVKQIVLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDT 635 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + +F F V ++ G GLGLSI + GG V++ S+ +T Sbjct: 636 GIGIDPANQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTF 695 Query: 785 NCRIPSK 791 P + Sbjct: 696 TLHFPRR 702 >gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197] gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E K+ ++K +F+ ++S+E+R+P+ +IG DLL + L +Q +Y Sbjct: 697 KASQELYHAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNET---PLMEEQRKY 753 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I SS LLN++NDILDL+ ++AG M+L + I + + ++ + NI + Sbjct: 754 VQTIKKSSETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQATLKNIDL 813 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN-- 726 D + V AD RLLQI S + SNA+ F+ +GS I + + D + ++ N Sbjct: 814 LYSIDSNVPKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLVNKIRVNIS 873 Query: 727 --GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I +D +F F V N+ G GLGL+I + L G + + + Sbjct: 874 DTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQT 927 >gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 501 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 14/225 (6%) Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 N+ALRKA D +K++F+ ++S+E+R+PL I+GF+ LL + + +Y I Sbjct: 267 NDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEK 326 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673 + +L+ L++DILDL+ +++ M+ N S LN + ++ +M N++ +++I+ Sbjct: 327 NGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADI-----ARMQRLNVKPGVELIA 381 Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D + S AD RL Q+ + +++NA+ F+S+GS I R D V++ G + Sbjct: 382 DLPAEDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMS 441 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 E++ VF RF Q G GLGL+I ++ + GG + S Sbjct: 442 EEVIAHVFERFYKGDSFVQ--GTGLGLAICKTIVEHFGGEIRAES 484 >gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] Length = 933 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 140/262 (53%), Gaps = 13/262 (4%) Query: 540 LTFVNVT-DSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + F+ +T + +R L K A R+A +K+ F+ ++S+E+R+P+ I+GFT+LL + Sbjct: 307 MEFIEMTLEKLRKSNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSE 366 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + N ++ +++ I S LL+L+ND+LDL+ +++G M++ +LL E+ ++ Sbjct: 367 E---TNEEKRKHLVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVET 423 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + D + + V D R+ QI + ++SN + F+S+G + ++A Sbjct: 424 YLPMAYSKGLHLAYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQG-YITIQANYKE 482 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 G + V + G IPE+ +F F R+ G+GLGL+I + ++L G + I Sbjct: 483 GKITYIVNDTGIGIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYI 542 Query: 775 SS----SDEGVTTINCRIPSKE 792 S + V ++ ++PSKE Sbjct: 543 ESHIGKGTKVVVSLPTKLPSKE 564 >gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 2100 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ KQ ++ Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LLNL++DILDL+ +++G + ++ I +N+LL + + + N+ Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVNNLLEVMARPFRHEAETRNLSF 1525 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V + S + D +RL QI +LSNA F+++G + A+ +G Sbjct: 1526 AVEVGADVAKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLRHA 1585 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G IP + + +F F R+ G GLGL+I NL GG + Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645 Query: 774 ISSS 777 + S+ Sbjct: 1646 LRST 1649 >gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 685 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 8/244 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++T +AE + + E KA++ K+ F+ +S+ELR+PL I+GF L + K Sbjct: 276 TNMDITQLKQAEEKVVKAKELAEKANKAKSEFLSSMSHELRTPLNAILGFAQLFELDK-- 333 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +LN Q + + I + LL L+ D+LDLA ++AG M + L++E + Sbjct: 334 NLNPAQRENIGEIEKAGKHLLELIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRP 393 Query: 661 KMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNG 717 +N + I V + +LG S AD RL Q+F ++SNA+ ++ K G I+ + + G Sbjct: 394 LAVKNRVEINV-HNFELGNASVRADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEG 452 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV++ G IP K +F F A RG+ G G+GL I + GG + S Sbjct: 453 HLRVSVQDTGFGIPLKQQKYMFQPFNRLGAERGEIEGSGVGLVITRQLVEQMGGELGF-S 511 Query: 777 SDEG 780 SDEG Sbjct: 512 SDEG 515 >gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 2457T] gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 2457T] gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor [Shigella flexneri 2002017] gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T] gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304] Length = 949 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 587 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] Length = 617 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + + SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIVISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 301] gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 301] Length = 949 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 672 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 542 FVNVTDSVRAERALTE---KNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLK 595 F ++T+ +AE+ E + A ++A+E +K+ F+ VS+ELR+PL +I+G+ LL+ Sbjct: 263 FRDITERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLR 322 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ + +E I ++ + L+ D+LD++ V G M+L + L+ ++ Sbjct: 323 ARRID--EKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAV 380 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +++ I+++ D +G + D RL QI +L+NA+ F+ +G TV + A+ Sbjct: 381 EAVQPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQG 440 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 V++NG I +F RF R G+GLGLSIV + LHGG + Sbjct: 441 EIHAQLVVRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAA 500 Query: 774 ISSSDEGV-TTINCRIP 789 S+ +G T R+P Sbjct: 501 AESAGKGQGATFTVRLP 517 >gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 646 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 24/271 (8%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V T+ A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L Sbjct: 151 VKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNL 210 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + KQ ++ E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + Sbjct: 211 SPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLT 270 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD---- 715 E + V +S + D QRLLQ+ +LSNA+ F+ G+ VI A +D Sbjct: 271 AEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGQDVPQA 330 Query: 716 --------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 D I FSV + G I + +F F R+ G GLGL Sbjct: 331 IREQLLEAGSLADPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGL 390 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SI L GG + S +T +P Sbjct: 391 SISREIARLLGGEIHAQSEPGRGSTFTLYLP 421 >gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 5 str. 8401] gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401] Length = 949 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 536] gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536] gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] Length = 949 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|108762821|ref|YP_628974.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108466701|gb|ABF91886.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 531 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 27/385 (7%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 ++T Q + + V + T+D ++G+ V DG I N F LW L+ Sbjct: 149 DVTEQHQAQERLEQTVSLLEATLDSTADGLLVVDRDGHITACNRQFEQLWGL--TGLAAC 206 Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNA 536 TH + A D + + + + +++ + +EL + +LE YS LP Sbjct: 207 THDATLLAAVREKLKAPDAF--LSRVQSLYEEPSQESFDIIELRNGRILERYS---LPQR 261 Query: 537 QTML------TFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 + L +F +VT+ V A ER L E +EA+R +++ F+ ++EL++PLT Sbjct: 262 RRGLITGRVWSFRDVTERVHAQRTQERLLAEAHEAIR----VRDDFLSIAAHELKTPLTP 317 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 + +LLK + L + + V+ A L LVND++D +V+AG +KL + Sbjct: 318 LRLHLELLKRA-LAAREPIAPERVDKAMAQVDRLSALVNDLVDATSVEAGRLKLQRKPVS 376 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L ++ NE E+ ++ + L + DR RL Q+ + +L NA+ +S G Sbjct: 377 LLEVANEACSEFRGLSAEHAFMCELPQEDLL--VMGDRGRLSQVLANLLENAVKYSPLGG 434 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 TV + + +G+ + SV + G I + +F RF SNA G+GLGL I Sbjct: 435 TVRVSLSHVDGNAVLSVADGGIGISREEQAHLFGRFFRASNAPVSGFGGLGLGLYICRDI 494 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 I HGGH+ + S +T + +P Sbjct: 495 IERHGGHIWVDSELGRGSTFHVSLP 519 >gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2142 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+RAL EK E L + K+ F+ ++S+ELR+PL +++ + L + G+L +Q ++ Sbjct: 1428 QAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSENTDGNLTGRQVEF 1487 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I AS + LL L+NDILDL+ +++G M ++ + DL V+++ + +++ Sbjct: 1488 ARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVERTFRQVADKKSLQF 1547 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--------- 718 + +G L G D +RL Q+ +LSNA F+ G T+ ++ AR Sbjct: 1548 DISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFTESGQVTLSIQRARAGWSSDHPILRTA 1607 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V++ G IP+D + +F F R+ G GLGLSI L GG + Sbjct: 1608 PTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGEIR 1667 Query: 774 ISS 776 + S Sbjct: 1668 LES 1670 >gi|196229487|ref|ZP_03128352.1| multi-sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196226719|gb|EDY21224.1| multi-sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 602 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 30/342 (8%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTE-ENRLSPGTH--IRNIAATCSRYYNES 494 T + + V DGR+ +NPA + L+K ++ L PG + I Y Sbjct: 266 TFSAFPDPIIVVAADGRVNFANPAANTFLFKLGMKDGLPPGVQEEVNRIVKGAPDY---- 321 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 + TSFD ++ + E + LP M + T S+ Sbjct: 322 --------LPTSFD----------RVIVFRIDEQEVFVLPRVIGMR---DETGSIFGAAV 360 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + + LR DE+K + V VS+EL++PLT++ LL ++GSLN KQ++ + Sbjct: 361 VLQDVTRLRLLDEVKTNLVSTVSHELKTPLTSVRMGLHLLLEERIGSLNPKQTELLLAAR 420 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++ND+LDLA +++G L + +L++ + + + ++ Sbjct: 421 EDSERLLRMINDLLDLAKLESGRTALPSLPMDPRELIDNAQDDLRALVESRGSKLVTKVT 480 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D +++ +FS +SNA+ + G ++L+A +G FSV ++G IP Sbjct: 481 PGLPRVSVDARQVAHVFSNFVSNAIKHTKPGEEIVLRAKNQDGRVRFSVVDHGPGIPIQF 540 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF + G GLGL+I + GG + + S Sbjct: 541 QGQIFDRFF-RLPGSESTGAGLGLAIAREIVLAQGGVIGVQS 581 >gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 1018 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 123/223 (55%), Gaps = 13/223 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ I+G T+LL ++L +Q + V + +S+ LL ++NDIL Sbjct: 365 KSEFLANMSHEIRTPMNGIVGMTELLLETRL---TPEQRESVGLVKSSADALLTVINDIL 421 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + ++AG + L+ L D++ + +++A + H + + + + D RL Sbjct: 422 DFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLLGDAHRL 481 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI---FSVKNNGSSIPEDMCKSVFNRF 742 Q+ + ++ NA+ F+ +G V+++ R ++GD + FSV + G IP + K+VF F Sbjct: 482 RQVLTNLVGNAIKFTDRGE-VLVRCERVPESGDAVVLRFSVTDTGIGIPGEKLKAVFEPF 540 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 R+ G GLGL+I + + L GG + + S S +G T Sbjct: 541 TQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAESESGKGST 583 >gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72] gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72] Length = 916 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 23/355 (6%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 ID S+ V + GR+ N A L E++ ++ +R DG Sbjct: 411 VIDASSQCVGIADGTGRLLYQNRAHARLLGYEDDEIA--------GMPVARLLPLDDGGV 462 Query: 499 LFAAIITSFDDERKSLQGTLEL------LSDSVLEYSIIPLPNAQTMLTF---VNVTDSV 549 L A I D R L G L + + S + QT F + T+ + Sbjct: 463 LAAQIFGMVQDAR-GLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFTDFTEEL 521 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 L E + +A++ K+ F+ +S+ELR+P+ ++GF LL+ +L + Q Sbjct: 522 ARRNELAEAKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLECDD--TLTADQRDN 579 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I + LL L+N++LDLA ++AG + L+ + L + +++ +Q I I + Sbjct: 580 VAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQLIQPLAAARAIVL 639 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ +L ADR RL Q+ +LSNA+ ++ +G V L A G SV + G+ Sbjct: 640 EMSLPDEL-VVRADRTRLKQVLLNLLSNAVKYNREGGRVSLAAQCREGRLRLSVSDTGAG 698 Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 I + ++F F A G G+GL+I + L GG + S EG T Sbjct: 699 IAPERMAALFEPFERLGAEASAIEGTGIGLTITRRLMELMGGEIGAESRVGEGST 753 >gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] Length = 942 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 130/241 (53%), Gaps = 14/241 (5%) Query: 546 TDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++SVR +RA+ E EA + + K+ F+ +S+E+R+P+ I+G TDLL+ + + Sbjct: 418 SNSVR-DRAIAEM-EAFKAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRT---DMT 472 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q QYV I S+ LL ++NDILD + +++G ++L+Y +I L +++++ + A Sbjct: 473 QQQEQYVGTIYQSTQSLLRVINDILDYSKIESGKLELDYRSIALENIVDDCVRLFALHSS 532 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD- 718 E + + + D ++ + D RL QI + +LSNA + +G + LK +N Sbjct: 533 EKGLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAFKCTDRGHIALHVNLKQPPNNKGV 592 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G + E S+F F + + + G GLGL I + I L GG + +SS Sbjct: 593 CMLMIEVVDTGIGLDEGQQSSLFQAFTDLSAKTKHNGAGLGLVICKRLIELLGGEIGVSS 652 Query: 777 S 777 S Sbjct: 653 S 653 >gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRTD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein [Teredinibacter turnerae T7901] gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter turnerae T7901] Length = 757 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 14/244 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT+ + R A+ K+ F+ +S+ELR+PL +IIGF+ L + S + K + +E I Sbjct: 518 LTQALDDARHANSAKSLFLASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKSYRSLEVIE 577 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN---NIRIKV 671 + LLNL+NDILDL+ V+AG M ++ + L LL+E S+ T + E+ + +K+ Sbjct: 578 RNGRHLLNLINDILDLSKVEAGKMSIDREWVSLKTLLDETVTSL-TPLAESKGLTLELKM 636 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGS 728 + ++ + AD++RL Q+ ++SN + ++S G I + +R+ + + V + G Sbjct: 637 V---EVANVFADQKRLAQVLLNLVSNGIKYTSTGGISISSRRESREGHEGVAIDVVDTGV 693 Query: 729 SI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I PED+ + VF R+ + G GLGL++ E +NLHGG +S+ S + Sbjct: 694 GIKPEDIDR-VFRRYEQLDEPSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYGEGSCFT 752 Query: 786 CRIP 789 C +P Sbjct: 753 CWLP 756 >gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82] gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15] gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O83:H1 str. NRG 857C] gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella dysenteriae Sd197] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 740 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ IK++F+ ++S+E+R+P+ II ++LL+ G+LN +Q IS+S+ LL + Sbjct: 216 EAERIKSAFLANMSHEIRTPMNGIIAMSELLEQ---GTLNPEQRSMTSTISSSAVALLAI 272 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +NDILD + ++AG M ++ +L+ EV + + I V S ++ V Sbjct: 273 INDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAKGVEICVESVLEMPLMVMG 332 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q ++ NA+ F++ G+ I ++G + V + G I ED +F F Sbjct: 333 DSARLRQCLLNVIGNAVKFTATGNVHIWLNRSEDGQIVVKVTDTGVGIAEDKLDHIFEEF 392 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + H + G GLGL+I I L GG +S S + + R+P Sbjct: 393 SQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEGSVFEMRLP 441 >gi|53714612|ref|YP_100604.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52217477|dbj|BAD50070.1| probable two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 756 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +T +N+ D + E+ L E + KA E+K SF+ ++S+E+R+PL I+GF+ Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554 Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL + + ++ QY++ I+ +S +LL L+NDIL+L+ +++G M + L+ L+ Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614 Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + Q+ I ++H ++ +G+ G V D+ RL+Q+ + L+NA F+ +GS Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP+ K +F RF Q G GLGLSI + I Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726 Query: 766 NLHGGHVSISS 776 G +S+ S Sbjct: 727 EKLQGRLSLRS 737 >gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671] Length = 880 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 370 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 486 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 544 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 545 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 604 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 605 VDSEPGMGSQFTVRIP 620 >gi|329964007|ref|ZP_08301261.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328526430|gb|EGF53444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 638 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 17/241 (7%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +E AL E + ++ +K++F+ +VS+E+R+PL I+GF+D+L S GS +Q Sbjct: 397 DFEESEGALREAKDRAEESSRLKSAFLANVSHEIRTPLNAIVGFSDVL--SAGGSSEEEQ 454 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT----KM 662 Y E I +S +LL L+NDILD++ ++A + T+ D++ +Q AT + Sbjct: 455 RTYFEIIKTNSDLLLRLINDILDVSRLEADRVSF---TLERCDVVQVCRQVTATVEQARK 511 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 +N R + + D QRL Q+ +LSNA F+ G+ T+ ++ RD+ +F Sbjct: 512 SDNKFRFECGHESV--EMRTDIQRLQQVVINLLSNANKFTVDGTITLKIEIDRDSNMAVF 569 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 SV + G IP D K VF RF Q G GLGLSI + GG V I D G Sbjct: 570 SVTDTGCGIPSDKQKLVFERFEKLNEYVQ--GTGLGLSICKLITEKWGGKVWI---DPGY 624 Query: 782 T 782 T Sbjct: 625 T 625 >gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354] gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302] gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|254420776|ref|ZP_05034500.1| MASE1 domain family [Brevundimonas sp. BAL3] gi|196186953|gb|EDX81929.1| MASE1 domain family [Brevundimonas sp. BAL3] Length = 560 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 7/236 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +ERA + + A +A E K+ + +V++E++SP+ +IG +L T +LG + +Q++ Sbjct: 320 SERARSGQVRA-EQASEAKSRLLANVAHEIKSPVAGVIGIGNLWSTGQLGPVTPQQTEMA 378 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + ++ + L +D+LD+A ++G +K++ + LL +V+++ + ++ ++ Sbjct: 379 DVLVKTARQVEALAHDLLDVARAESGAVKVDLRPTDIPGLLEDVRRAAMLRSEAQSVDVQ 438 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG--- 727 V+ +G VAD QRL Q+ + SNA+ + G VIL+A R + V + G Sbjct: 439 VVCEGDGLIAVADSQRLAQVIDNLTSNALKYGGSGGRVILRALRADQHIRIEVVDFGPGL 498 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 SS + FNR R G G+GL+I + + L GG + ISS EG T Sbjct: 499 SSQKQSQLFEPFNRL--GLERSSVEGHGVGLAIAKRLVELQGGAIGVISSPGEGAT 552 >gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sonnei Ss046] gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185] gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088] gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088] gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185] gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB and RcsD [Escherichia coli W] gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B] gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010] gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G] gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357] gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli KO11] gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120] gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167] gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UTI89] gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89] gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli IHE3034] gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252] gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1523 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 10/216 (4%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 +SF+ +S+E+R+P+ ++G T LL + LN++Q +VE I S LL L+NDILD Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLET---PLNAEQRDFVETIRVSGDALLTLINDILD 906 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688 + ++ G M+L L L EV A H + + V+ ++ ++ D RL Sbjct: 907 FSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLR 966 Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QI + ++SNA+ F+ +G VI ++ + SV++ G IP+D +F F Sbjct: 967 QILNNLVSNAIKFTHQGEVVIQAELMQETATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQ 1026 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 R+ G GLGL+I + L GG + + S + Sbjct: 1027 VDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEE 1062 >gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli CFT073] gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073] gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU 83972] gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046] gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68] gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180] gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|319955603|ref|YP_004166870.1| histidine kinase [Cellulophaga algicola DSM 14237] gi|319424263|gb|ADV51372.1| histidine kinase [Cellulophaga algicola DSM 14237] Length = 591 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 12/253 (4%) Query: 546 TDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++ R R+L + + K N + VS+E+R+PL IIGFT+LL S +L Sbjct: 54 SETPRKVRSLNKTFKKTNKTAPTSNDEQLIARVSHEIRTPLNGIIGFTELLSES---TLT 110 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q+ +V+ I +S LLNL+N++LD + + +G N+++N+V T + Sbjct: 111 EGQTTHVQAIKGASNTLLNLINELLDYSKLTSGTAYFESVDFNFNNIVNDVCYLCQTLIV 170 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718 + V SDG + + D +L Q+ ++ NA+ F GS ++K +DN + Sbjct: 171 NPKVAFNVSFSDGIPKNLIGDPSKLSQVLLNLIGNAIKFVEAGSIDLVIDVVKKNKDNVE 230 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV + G I ED S+F+ + + Q+ G GLGLSIV + GH+S+ S Sbjct: 231 LSFSVIDTGIGIAEDKLTSIFDYYNQASEDTQKHYGGTGLGLSIVRHIVESLNGHISVKS 290 Query: 777 SDEGVTTINCRIP 789 TT N +P Sbjct: 291 ELGVGTTFNFMLP 303 >gi|299782757|gb|ADJ40755.1| Sensor protein [Lactobacillus fermentum CECT 5716] Length = 380 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%) Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567 G L ++ LE+ I P N Q ++T VN +T +++ ERA +EK+ Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620 K+ + +VS++LR+PLT+IIG+ LG + Q Q E I S I + Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 NLV D+ + V +N T+ L LL +V S + + + I V + S Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVTCEPSPLSI 261 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD ++L ++FS +++NA+ + S + L A + + +V N+G IP + K +F Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVANDGEKIPAESVKHLFE 321 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V ++ G GLGL+IV+S + LH G V+ + SD+ T +P K+ Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374 >gi|253991255|ref|YP_003042611.1| two-component sensor/regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638303|emb|CAR66926.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782705|emb|CAQ85870.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 7/238 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RALTE + A++ K+ + +S+ELR+PL+ +G +LLKTS+ ++++Q Q E Sbjct: 383 RALTEAKQQAELANKRKSRHLTTISHELRTPLSGTLGALELLKTSE---MDNEQLQLAET 439 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + LL ++N +LD + ++AG ++L Y+T L LL++ +I H + ++ Sbjct: 440 AHQCTLSLLFIINKLLDFSRIEAGQVELQYATCQLLPLLDQSMATIQGMAHNKRLTLETF 499 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + S V D R+ QI +L NA F+ G + L R + IF V ++G + Sbjct: 500 VAADVPQSLVLDAIRVKQILVNLLGNACKFTDDGG-ICLTVTRSDNMLIFDVTDSGCGVA 558 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + SVFN F Q G GLGL+I + + GG + +S+ T++ ++P Sbjct: 559 PENISSVFNPFYQVQEHAQ--GTGLGLAIAATLAKMMGGSLKFNSAFGLGTSVVFQLP 614 >gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 761 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 22/288 (7%) Query: 521 LSDSV--LEYSIIPLP----NAQTMLTF-VNVTDSVRAER-----ALTEKNEALRKADEI 568 +SD++ L + PLP L F V V + AER AL + EA A+ Sbjct: 180 MSDAIAGLRSPLRPLPWFASREFRALDFSVGVLEETFAERDEREFALEQAREAADIANRA 239 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IG +LL+ ++L + Q Y E I S + LL ++NDIL Sbjct: 240 KSEFLANMSHEIRTPMNGVIGMAELLQETRL---DDDQRMYAETIGKSGSALLTIINDIL 296 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 + + ++AG ++L+ + L + +V ++ K E + + + D L F D R+ Sbjct: 297 NFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELFEGDAGRI 356 Query: 688 LQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF- 742 Q+ + I NA+ F+ +G I A+ +G + V + G I +D +F F Sbjct: 357 RQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIGRIFRAFE 416 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 NA G GLGL+I + L GG V + S + +IP Sbjct: 417 QADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIP 464 >gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] Length = 617 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + + SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIVISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--QVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGIGSQFTVRIP 673 >gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SE11] gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 585 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 12/236 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY----ISASS 617 L+K ++++ FV +VS+EL++P+T+I GF + L + K Q +EY I S Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM-----KDEQTLEYFLSIIWKES 406 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L LV D+LDL+ ++ +L+ T+ L DLL E+ K E I + K Sbjct: 407 ERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDF-YLHAPKS 465 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D R+ QIF +++NA+ ++ KG V L + + VK+ G I E Sbjct: 466 VYMEGDANRIKQIFINLITNALTYTPKGGKVELMIEEKEKEILVHVKDTGIGIDEQEIPR 525 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V A G GLGL+IV+ + H GH+++ S+ TT P + Sbjct: 526 IFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPKQ 581 >gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 422 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 30/267 (11%) Query: 553 RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 RAL ++N L +A D++K++F+ VS+ELR+PLT+IIGF+++L G LN + Sbjct: 155 RALQQQNAELERAIAHLRDVDQLKSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPLNEE 214 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKM 662 Q++Y I LL L+ IL+++ ++ G ++L L D++ S A + Sbjct: 215 QTEYANMILDRGEELLRLITQILEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRA 274 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------- 712 H N +R +D L + D ++LQ+ +++N + F+ V ++A Sbjct: 275 HVNLVRD--FAD-DLPLMLVDPDKVLQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFE 331 Query: 713 ----ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + D + SV + G IPED +F+ F V ++ + G GLGLSIV+ I Sbjct: 332 EDFFGEEVADAMRVSVSDTGIGIPEDQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLI 391 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 HGG + S TT + +P E Sbjct: 392 EAHGGEIWAESIVGVGTTFHFTLPLAE 418 >gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] Length = 877 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 120/212 (56%), Gaps = 7/212 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+P+ I+G T L ++L N +Q +Y+ + +S+ LL++++DIL Sbjct: 252 KSAFLANMSHEIRTPMNGILGMTQLCLDTEL---NGEQREYLSLVMSSAQSLLHIIDDIL 308 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG + L+ + L + + + + E I + V D ++ + D RL Sbjct: 309 DFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPEMMRVDVVRL 368 Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ + +LSNA+ F+ +G ++ A A +G++ F V+++G IP + + +F F Sbjct: 369 RQVLTNLLSNALKFTPQGEILLAVAPAAQDGEWRFRVRDSGIGIPPEKQQVIFEAFSQAD 428 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I + + GG ++++S Sbjct: 429 TSTTRRYGGTGLGLTISARLVAMMGGQLTVAS 460 >gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 908 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 132/247 (53%), Gaps = 6/247 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN T + + L E + +D +K++F+ ++S+E+R+PL I+GF++L+ S+ + Sbjct: 524 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 582 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ T L + E+ I K+ Sbjct: 583 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKI 640 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ ++ + G DR RL Q++ L+NA+ + G + + + G Sbjct: 641 TNPDVEFQMANSGPDCWIFLDRNRLKQVWMNYLTNAIKCTKSGH-IKMGYGIERGGIRIY 699 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V+++G IP ++ + VF RF Q G GLGL+I + I GG V +S+ + + Sbjct: 700 VEDSGVGIPIELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPDVGS 757 Query: 783 TINCRIP 789 T IP Sbjct: 758 TFWAWIP 764 >gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli HS] gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ATCC 8739] gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli HS] gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 7/252 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 ++++ R E L + E A K+ F+ ++S+ELR+PL IIGF+++L+ G+L Sbjct: 386 DISERKRHEMELLDARERAETASRTKSRFLANMSHELRTPLNAIIGFSEILRMQMFGALG 445 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + ++Y + I+ S +LL+L++DILD++ ++AG +L+ T+ L+ + + + Sbjct: 446 HPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHPETVDAAALIESCVRLVRGRA 505 Query: 663 HENNIR-IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 EN I +K I +L G+ VAD + L QI +LSN+ F+ G + + Sbjct: 506 EENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAKFTPAGGRISVALTETEETIC 565 Query: 721 FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+V + G IP D + F + ++A + G GLGL++V S LHGG ++I S Sbjct: 566 FAVADTGRGIPADQIARLGQPFEQIATDAAL-SKEGTGLGLALVRSLAELHGGSMAIDSE 624 Query: 778 DEGVTTINCRIP 789 TT+ +P Sbjct: 625 LGVGTTVTVTLP 636 >gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli APEC O1] gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB and RojN [Escherichia coli APEC O1] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 953 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D +K FV VS+ELR+PLT+I G L+ G L V +++ L+ Sbjct: 462 LKRIDRMKTEFVSTVSHELRTPLTSIRGSLGLISGGVAGELPEAVKSLVAIATSNCERLI 521 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-----TKMHENNIRIKVISDGK 676 L+ND+LD +++G ++LN L LL +Q++A H +R++ D Sbjct: 522 RLINDMLDSEKIESGKLRLNLQAAELKPLL---RQALAANEGFAAQHGVKLRLRA-PDAA 577 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L + + D RL+Q+ + +LSNA+ FS GSTV + +R V + G IPE Sbjct: 578 LQARI-DGDRLMQVMTNLLSNAVKFSPAGSTVEVMLSRTARQVRVEVSDQGPGIPEAFRN 636 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F ++ Q+ G GLGL+I I GG + +S+ TT +P Sbjct: 637 RIFQKFSQADSSDTRQKGGSGLGLNISRGLIESMGGRIGFNSNGGAGTTFFFELP 691 >gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 820 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 98/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 379 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G + +L + L + + ++T+ +R L E Sbjct: 380 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 439 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 555 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 614 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|253565117|ref|ZP_04842573.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251946582|gb|EES86959.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 756 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +T +N+ D + E+ L E + KA E+K SF+ ++S+E+R+PL I+GF+ Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554 Query: 593 LLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL + + ++ QY++ I+ +S +LL L+NDIL+L+ +++G M + L+ L+ Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614 Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + Q+ I ++H ++ +G+ G V D+ RL+Q+ + L+NA F+ +GS Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP+ K +F RF Q G GLGLSI + I Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726 Query: 766 NLHGGHVSISS 776 G +S+ S Sbjct: 727 EKLQGRLSLRS 737 >gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 653 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K SF+ ++S+E+R+PL IIGFT+LL + L+ +Q +++ + + LL +VNDIL Sbjct: 177 KESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDVQTAGENLLLIVNDIL 233 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ +++G + L L L V + K + + + D +L + D+ RL Sbjct: 234 DLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKT-ADGVEFNLFLDAELPDVITGDQGRL 292 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741 QI + NA+ F+++G I + ++ G+ FSVK+ G IP++ +S+F R Sbjct: 293 NQIMVNLAGNALKFTNEGEVTI--SVKNKGETEDSYTIRFSVKDTGIGIPKEHLESIFER 350 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F R+ G GLGLSIV+ + LH + + S + Sbjct: 351 FTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSRE 389 >gi|307151156|ref|YP_003886540.1| histidine kinase [Cyanothece sp. PCC 7822] gi|306981384|gb|ADN13265.1| histidine kinase [Cyanothece sp. PCC 7822] Length = 707 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K E+L++ E+K+ F+ ++S+E R+PL +I+ ++ L G LNS+Q + V +I Sbjct: 203 LDQKAESLKRVSELKSRFLSNMSHEFRTPLNSILSLSNFLLKRMDGELNSEQEKQVTFIR 262 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ L +VND+LDLA V+AG + + DL ++ + + NN + +I + Sbjct: 263 NAAQQLSEMVNDLLDLAKVEAGKTDIYADKFEIGDLFGTLR-GMFRPLLINNSSVSLIFE 321 Query: 675 GK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + S +D ++ QI +SNA+ ++ KG T+ + A FSV + G I Sbjct: 322 DPDHIPSVYSDEGKIAQILKNFISNALKYTEKG-TITVAAVPIGNHVTFSVADTGIGIAP 380 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +S+F+ FV Q+R G GLGL I L GG VS+ S Sbjct: 381 ENLESIFDEFVQLKSPLQKRVKGTGLGLPISRKLAQLLGGDVSVIS 426 >gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] Length = 470 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++ ++Q ++ I S Sbjct: 237 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLHIILKESER 293 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL E+K + K E I ++V + S Sbjct: 294 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQV-DVLRHVS 352 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G TV + D + V + G I + +F Sbjct: 353 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVALLEDEHNAYIKVSDTGIGISTEEIPRIF 412 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A G GLGLSIV+ + H G +++ S+ TT +P + Sbjct: 413 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPKAD 467 >gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 901 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 21/255 (8%) Query: 544 NVTDSVRAERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++T+ V E++L E+ K+++ K+ F+ +S+ELR+PL +IIGF LL+ Sbjct: 483 DITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFLSSMSHELRTPLNSIIGFAQLLE- 541 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L L+ KQ + ++ IS S LL+L+ND+L+LA +++G + L+ L ++ E Q Sbjct: 542 --LSDLSEKQKKQLKNISTSGEHLLHLINDLLELAKIESGNISLSVERTELKPIVEECLQ 599 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714 + T +++I+I + FV AD RL Q+ L+NA+ ++ + ++ L A + Sbjct: 600 MVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVLVNFLTNAIKYNRENGSITLFAEKK 659 Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFIN 766 NG S+++ G I E K +F F H G G+GL+I + I Sbjct: 660 PAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFNRLGHETSTIEGTGIGLAITKDLIE 719 Query: 767 LHGGHVSISSSDEGV 781 G V S+ EGV Sbjct: 720 KMDGQVGFEST-EGV 733 >gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 917 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 7/265 (2%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +P+ T+ + ++T+ + + L A+E K+ F+ +S+ELR+PL IIG+++ Sbjct: 385 IPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + + ++ I+++ LL+L+NDILDL+ ++A M++ T + DLL Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +V ++A M N + LG +D+ +L Q +LSNA F++ G V L+ Sbjct: 505 DVAATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563 Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 R D +F V + G + + + +FN F R G GLGLSI SF Sbjct: 564 RREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 + GG V++ S + +P++ Sbjct: 624 MIGGVVTVESEVGKGSVFTMEVPAQ 648 >gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042] gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 643 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 176/392 (44%), Gaps = 49/392 (12%) Query: 445 EGVAVFGPDGRIKLSNPA------FRSLWKTEENRLSPGTHI----------------RN 482 EG+ PDG ++ +NPA + SL + N S G+ I R Sbjct: 253 EGILQATPDGVLRRANPAMARIFGYDSLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERG 312 Query: 483 IAATCSRYYNESDG---W-DLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537 Y DG W L A I S E ++G LE ++D E + L Sbjct: 313 EIKRFEAEYYRRDGKTIWGSLNARAIYSDSGEIIFIEGILEDITDRKKAEQDLADLNRHL 372 Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL---- 593 L D V R L E N+ LR+ DE+K++F+ VS+ELR+PLT+I+GF L Sbjct: 373 EQLVRERTEDLVNKARELEEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHKE 432 Query: 594 -----LKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644 L ++ L K+ Q ++ IS L L+ND+LDL +++G M Sbjct: 433 FTRNYLPLAQNEPLLVKKGQRIQNNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDER 492 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + ++D++ QS+ T + N ++ ++S D L +AD R+ Q+ +L+NA F+ Sbjct: 493 LNMSDIVETAVQSV-TGLFSQNPQVGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFT 551 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR-RGVGLGL 758 GS V ++A G + + G I PED + +F +F A G + +G GLGL Sbjct: 552 DDGS-VTVRAFPRFGQVRVEIADTGVGIHPEDQNR-IFEKFHQTKTATMGDKPKGTGLGL 609 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +I + + G + + S +T +PS Sbjct: 610 TICREIVEHYSGRIWVESEPGKGSTFIFTLPS 641 >gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sp. D9] gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234] gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234] Length = 989 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 12/247 (4%) Query: 546 TDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 T+ +R R E+ +A +A K+ F+ ++S+E+R+P+ +IG +LL+ ++L + Sbjct: 322 TEQLRKSREELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTEL---SE 378 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +YV I S+ L++L+NDILD + ++AG ++L VL D L + Q++A + + Sbjct: 379 QQRRYVSIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAAD 438 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI 720 + + I + D RL QI ++ NA+ F+ G V+ L D+G + Sbjct: 439 KGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHL 498 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V++ G IPE + +F F R+ G GLGL+I GG + + S Sbjct: 499 QFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSK 558 Query: 778 DEGVTTI 784 GV ++ Sbjct: 559 -PGVGSV 564 >gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus DSM 14838] Length = 630 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S + ++ L E ++D +K++F+ ++S+E+R+PL I+GF+ +L + + + Sbjct: 388 SQKHKKELILAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---ADTPESH 444 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I ++ +LL L+NDILDL+ ++AG++ Y+ + +N + +++ + +M N Sbjct: 445 EYIRIIEDNNCLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPANVE 504 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 I K + ++ RL Q+ LSNA+ ++++GS + +G+ F V++ G Sbjct: 505 CIAEFGMKKCHVY-TEKNRLGQVLGNYLSNAIKYTTEGSITVGYYPPKDGNMRFYVRDTG 563 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + K++F RFV + Q G GLGLSI + V +SS Sbjct: 564 CGISPEKQKAIFQRFVKLDNFKQ--GTGLGLSICQMIAEKMHATVGVSS 610 >gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii CDC 3083-94] gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii CDC 3083-94] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 626 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +KN+ L + +E+K +F+ +S++L++P+ I G TD++ T + +L+++Q + V+ I S Sbjct: 386 QKNKLLSQVEELKTNFISMMSHDLKTPIARIQGMTDVILTDSV-ALSNQQREAVDTIKHS 444 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK---VIS 673 S LL +N IL +++ ++LN + +N+LL EV + HE R+K ++S Sbjct: 445 SDDLLKFINAILSYGKIESQGVQLNMQSKDINNLLQEV-----IRKHEFLARVKRIQIVS 499 Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + D + + Q+FS ++ NA+ +S + + +++ + I V + G IP+ Sbjct: 500 ELEPMFPVQVDPELMKQVFSNLVENAIKYSPEDTKIMVSSEETPSKVIVQVADQGPGIPQ 559 Query: 733 DMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D +++F +F N +G GLGL + + F LH G++ + SS +T +P Sbjct: 560 DELQNIFMKFFRSKNVKSSPIKGSGLGLYLAKYFTELHHGNIFVESSHGNGSTFTVELP 618 >gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 823 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 42/359 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 IDH+++G+ V +G+I +NPA +L+ + IR CS ++ D+ Sbjct: 226 IDHIADGLLVTDAEGKITRTNPALANLFALGD------LDIR--GKLCSEAFS----GDV 273 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAER 553 ++ S + QG ++L D + + + P+ L ++ SV R Sbjct: 274 LNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIG---SVVLFR 330 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKL 599 +T + E D +K F+ VS+ELR+PLT+++GF L++ +K+ Sbjct: 331 DITAEKEI----DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKI 386 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ + V+ I + L NL+ND+LD+A ++AG + + + + ++ + Sbjct: 387 NRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATT 446 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + I++ V L + D +L+Q+F ++SNA+ F+ G+ V LK Sbjct: 447 SLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETGN-VTLKLMAVKSAI 505 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SVK+ G I + VF +F V N + +G GLGL I + I HGG + + S Sbjct: 506 KVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVES 564 >gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 575 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 129/243 (53%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA +A K F+ ++S+E+R+PL I G L+ S +L+ Q +Y+ Sbjct: 186 LAIQKEAAEQASRAKTEFLANMSHEIRTPLNGIFGMIQLIDNS---NLDEYQKEYLVAAK 242 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L +L++ ILDL+++++G L +T L+D+ V++ A + + + D Sbjct: 243 HSCKRLTSLLSHILDLSSIESGKFSLRENTFSLSDIKESVRELFAIESARKKLLFQFNLD 302 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD---FIFSVKNNGS 728 +L S + D R+LQI + NA+ F+ GS I + R + D +F+++++G Sbjct: 303 LRLPSRVIGDEARVLQILFNLAGNAIKFTESGSVRIDACELPRHDPDACRVLFTIEDSGI 362 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP+ + K +F+ FV A++ + +G GLGL+IV + L GG +++ S + TT Sbjct: 363 GIPDQLQKEIFDPFVQAEGAYKRRFQGAGLGLAIVRKLVRLLGGTLAVDSVEGEGTTFYL 422 Query: 787 RIP 789 +P Sbjct: 423 SLP 425 >gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 920 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 14/255 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + VRA AL EK L + K+ F+ ++S+ELR+PL +++ +L + +L KQ Sbjct: 489 EKVRA--ALEEKAGQLEQTSRYKSEFLSNISHELRTPLNSLLILAQMLAENDKSNLTPKQ 546 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y E I +S LL L+NDILDL+ V++G M + + L D+ +++ ++ Sbjct: 547 VEYAETILSSGQDLLVLINDILDLSKVESGKMDVCPRAVKLKDIQKFLERQYLPVANQKT 606 Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFI 720 I ++ D L + AD QRLLQI +LSNA F+ +G + + K D +F Sbjct: 607 IVFTILIDSDLPETIFADEQRLLQILKNLLSNAFKFTEQGCVLLSIRKVQKKLTDKQEFP 666 Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I ++ +F F R+ G GLGLSI L GG + + Sbjct: 667 TMLSFAVSDTGIGISQEKHIMIFEEFRQADGTTSRKYGGSGLGLSISNKIAMLLGGFIEL 726 Query: 775 SSSDEGVTTINCRIP 789 S + +T +P Sbjct: 727 ESEEGKGSTFTLYLP 741 >gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2] gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2] Length = 948 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L S + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPSGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + D + + D RL Q+ S +LSNA+ F+ G V+ + + Sbjct: 556 YLPLVVRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCS 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|265765924|ref|ZP_06093965.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263253592|gb|EEZ25057.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 756 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +T +N+ D + E+ L E + KA E+K SF+ ++S+E+R+PL I+GF+ Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554 Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL + + ++ QY++ I+ +S +LL L+NDIL+L+ +++G M + L+ L+ Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614 Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + Q+ I ++H ++ +G+ G V D+ RL+Q+ + L+NA F+ +GS Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP+ K +F RF Q G GLGLSI + I Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726 Query: 766 NLHGGHVSISS 776 G +S+ S Sbjct: 727 EKLQGRLSLRS 737 >gi|188583112|ref|YP_001926557.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346610|gb|ACB82022.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 920 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E ++ +A+ K+ F+ +S+E+R+P+ ++ +LL +++L +Q +Y + I+ Sbjct: 260 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASAEL---PPRQQRYAQVIA 316 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD A V++G +++ + D+ + V A + + + D Sbjct: 317 RSGQSLLAIINDILDFAKVESGRLEVERIPLSPRDVADTVVTLFAERAASAGLDLAAQID 376 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730 G + S + D RL Q+ +SNA+ F++ G ++ ++A+ +V + G I Sbjct: 377 GDVPRSLLGDPVRLGQVLGNFVSNALKFTAAGHVLVRMTMEASASGPVLCIAVSDTGIGI 436 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PED +F F RR G GLGLSI E I GG V + S +T RI Sbjct: 437 PEDRLAGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGCVGVESRLGAGSTFWARI 496 Query: 789 PS 790 P+ Sbjct: 497 PA 498 >gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272] Length = 933 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|186681745|ref|YP_001864941.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464197|gb|ACC79998.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 659 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 117/502 (23%), Positives = 219/502 (43%), Gaps = 47/502 (9%) Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355 SKEI + L+ L + + I + + N+ FV++W+I + + + Sbjct: 160 SKEIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFVDMWQIPESLILSKKC-PRC 218 Query: 356 LEFLRSANKLPEQLN---WKTWKENIFSVYKSSE-------THKDTWHLPNGQTLHVIVT 405 F + K P+ N W+ ++ F Y E H HL +G+ + Sbjct: 219 KAFFENKLKDPQAFNRLIWEVSSQSDFESYDILELKDGRVFAHYSKPHLLDGKII----- 273 Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465 G +W ++T E L V+ T+ ++ R+ NPA Sbjct: 274 -----GRVWSIWDITESKQTEEALR-LNAVRFRTLAETTDTSTFLIQGTRLCYINPAVEQ 327 Query: 466 LWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQGTLELL 521 L + L G +R + + R +E+ ++ I + + L + +L Sbjct: 328 LTGYTKEELLTGFDLRRLIKSKRRRQVRKQSEATNFEYQEMNILTKSGTERWLACAVVML 387 Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 D VL++ P+ M+ +++TD AE L + E ++ E++ F+ V ++ R Sbjct: 388 -DGVLDFGGKPVE----MIAGIDITDYKYAELGLNQALEQAKQLSELRARFLSMVCHQFR 442 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +PL NI+ F++ L ++ K+ Q +++I ++ L +++DIL + +A K+ Sbjct: 443 TPL-NIVSFSNSLLKEEVDKRTQKKIQPLLDHIQKATEQLGQMLDDILFFSKAEAE--KI 499 Query: 641 NYSTIVL------NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 NY L NDL+ E++ +I+ IRI ++ + D++ L I + Sbjct: 500 NYEPKPLELVDFCNDLVAEMQMTIS------KIRINFVTQENSLTACIDKKLLEPILKNL 553 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 L NA+ +S G TV L+ + +N IF V++ G I + +F F + + G Sbjct: 554 LDNAIKYSPSGITVDLRLSCENEQLIFQVEDRGIGISALDQQRIFEPFYRGTNIDRIPGT 613 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGLSI+++ ++LH G VS+ S Sbjct: 614 GLGLSILKTLVDLHHGQVSVES 635 >gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 702 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A ++ F +R E L ++++ K+ F+ +S+E+R+P+ I+GF++LL Sbjct: 179 GALALMLFRESLKQLRREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELL 238 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + ++ ++ E I S LL ++NDILDL+ ++AG+++++ + D++ V Sbjct: 239 ANE---AQSEQEKRHAETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFV 295 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712 +Q A + E + + IS S + D RL QI ++ N++ F+ +G TV L Sbjct: 296 QQMFARQAIERGLELHAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGGVTVRLHG 355 Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 R V++ G IP +M VF F V+ + Q RG GLGL+IV+ Sbjct: 356 ERGTEHRSRMLLTVEVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLS 415 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 +L GG + + S T P E Sbjct: 416 DLMGGRILLDSQPGRGTLFRFEFPHVE 442 >gi|170077522|ref|YP_001734160.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp. PCC 7002] gi|169885191|gb|ACA98904.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp. PCC 7002] Length = 760 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 17/256 (6%) Query: 551 AERALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------TSKLG 600 A+R E +AL + A + K F+ +S+EL +PLT+IIG ++ L KL Sbjct: 362 AQRRARELEDALLSAQVASQSKKEFIHIMSHELLTPLTSIIGLSNTLSYWTADDNPKKLS 421 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ Y++ I S T L NL+ DILD + +A L+ L L V Sbjct: 422 P--EKQRVYLQTIHESGTRLRNLLQDILDFSQTEAARSVLDLQKFSLKQLCYRVLNGFQE 479 Query: 661 KMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NG 717 I +K I+ + + SF AD RL +I S +LSNA+ F+S G V R+ Sbjct: 480 LGDRQGINLKFINQLEPEQDSFYADPIRLEKILSHLLSNAIKFTSHGGEVTFSIWREKQK 539 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D F VK+ G IP +F +F RR G G GL++V+ + +H G + ++ Sbjct: 540 DVSFQVKDTGIGIPPQQIPLLFEQFQQLEPSMSRRYDGAGFGLALVKQLVEIHQGQIHVT 599 Query: 776 SSDEGVTTINCRIPSK 791 S+ + + RIP++ Sbjct: 600 STPKKGSIFTVRIPNQ 615 >gi|126649988|ref|ZP_01722221.1| hypothetical protein BB14905_01920 [Bacillus sp. B14905] gi|126593160|gb|EAZ87122.1| hypothetical protein BB14905_01920 [Bacillus sp. B14905] Length = 364 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A++ KN V ++++++++PLT+IIG+ LL +K + K+ +YV S L + Sbjct: 136 QEAEQRKNDLVVYLAHDIKTPLTSIIGYLSLLDEAKDMPVEQKE-KYVTITLEKSYRLEH 194 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ ++ + + L +I LN +L +V + + V DG + + A Sbjct: 195 LINEFFEITRFNLQSIILEKDSIPLNYMLMQVADEFYPLLTPRGQKAVVHIDGDI-TIYA 253 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L ++F+ IL NAM +S ST+ + A ++N + S N G +IP + K +F +F Sbjct: 254 DGNKLARVFNNILKNAMAYSDPNSTIEITAKKENNETFISFSNTGKTIPPEKLKMIFEKF 313 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + NA Q G GLGL+I + HGG ++ +SS+E T IP Sbjct: 314 YRLDNARSTQTGGAGLGLAISNEIVQAHGGTITATSSNEK-TIFTVMIP 361 >gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 830 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 15/236 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E EA A+E K+ F+ +S+E+R+P+ I+G +LL S+L +++Q++ + Sbjct: 171 RKLLEAKEAAESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQL---SAEQTKMIST 227 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S+ LLN++NDILD + ++AG M+L T+ + +++ V +++A ++ N+ + Sbjct: 228 VRDSAFSLLNILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLHCY 287 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAARDNGDFIFS 722 D + + V D RL QI + SNA F+ + + +L +A S Sbjct: 288 VDPDIPDALVGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIRIS 347 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 VK+NG + + +F+ F RR G GLGLSI + + GG + ++S Sbjct: 348 VKDNGIGMDQVTLDKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVAS 403 >gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 766 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +R +R+L A +AD +K+ + VS+ELR+PL I G+ ++L+++ S ++ Sbjct: 372 LRTQRSLQGARTARERADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSA---SDDAL 428 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q ++ I S+ L +V DILD +++ G ++L+ + + L + + T Sbjct: 429 QQQAIDAIDRSAHSLTRMVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAA 488 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ S ++SNA+ F+ G V + D + +V + Sbjct: 489 GIALEFDCTASACVVSGDAERLRQMLSNLVSNALKFTPAGGAVTVTLTHDAAHAVLAVGD 548 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I + VF+ F + RRG+GLGLSIV LHGG V + S+ Sbjct: 549 TGQGIASEFIPYVFDMFRRADGSPASPRRGLGLGLSIVRHIAELHGGEVRVDSA 602 >gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863] gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] Length = 828 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 126/238 (52%), Gaps = 16/238 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L + E AD +K++F+ ++S+E+R+PL I+GF+ LL G Sbjct: 587 DITELKETEAKLIDAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLLVQ---GENP 643 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ ++AG + +N L ++ +++ K Sbjct: 644 EEREQYMAIVEENNELLLQLISDILDLSKIEAGTFDFVKQELDVNQLCEDMVRTMKLKAR 703 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++V+ D +L V+DR RL Q+ + ++NA+ F+S GS + + F Sbjct: 704 PG---VEVVFDHRLPECIIVSDRNRLNQVIANFMNNAIKFTSTGSIRLGYGQAETNLLRF 760 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I ++ +F+RFV S H G GLGLSI +S + GG + + S Sbjct: 761 YVADTGIGIIQEKQAEIFDRFVKLNSFVH-----GTGLGLSISKSIVEQLGGTIGVES 813 >gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 593 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 38/358 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N ++ G + + + Sbjct: 262 MADGVITINIDGTILMTNPPAERFLQAWYYEQNMKIKDGDEL------------PPEARE 309 Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 LF +++ ++ +LQG +L S PL N Q +V +V R +T Sbjct: 310 LFHTAVSTEKEQMIEVTLQGRTWVLLMS-------PLYNQQ------DVRGAVAVLRDMT 356 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ R+ D+++ F+ +VS+ELR+P+ + G+++ + GS K+ + + I Sbjct: 357 EE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAGSEEEKK-EIAQIIYDE 411 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S + LVND+LDLA ++AG + LN + +L ++ + E + + Sbjct: 412 SLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVD 471 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 FV D ++ Q+F+ ++ NA+ + +G V VK++GS IPE+ Sbjct: 472 EPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLP 531 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF A R G GLGL+IV++ + H G + S T IP K+ Sbjct: 532 FIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589 >gi|150016898|ref|YP_001309152.1| osmosensitive K+ channel signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903363|gb|ABR34196.1| osmosensitive K+ channel signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 861 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 554 ALTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVE 611 A T+K L +++ ++++ ++ +S++LRSPL I G + +++T L S +K + ++ Sbjct: 617 AETQKKSNLEIESERLRSNLLRSISHDLRSPLAGIKGAVSTIIETGNLISEETK-GELLQ 675 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I + L+ LV ++L + D G +K+ S ++ +++ E Q A + + + + V Sbjct: 676 GIYDDTEWLIRLVENLLSMTRFDGGNLKVRKSIEIVEEVVYEAVQRTAKRFRDYKMEVTV 735 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + D + Q+ + NA+ F+ KGS + +K +N + IF V +NG I Sbjct: 736 PEEVIMVPM--DGSLIEQVLINLFDNAVKFTPKGSLIEVKIYENNKNVIFEVIDNGMGIS 793 Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ +F RF +N + RRGVGLGL+I +S + HGG +S + DEG IP Sbjct: 794 EEILPHIFERFFTNGDKISDSRRGVGLGLAICKSIVEAHGGTISAHNKDEGGAVFRFNIP 853 Query: 790 SKE 792 +E Sbjct: 854 KEE 856 >gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70] gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|269793330|ref|YP_003318234.1| PAS/PAC sensor signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100965|gb|ACZ19952.1| PAS/PAC sensor signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 673 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 137/261 (52%), Gaps = 18/261 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT E L E + + ++ + VS+E+R+PL +I+G+ DLLK + Sbjct: 340 TLKDVTSRKMVEEMLRSAKEQAQAESQARSRLMSRVSHEIRTPLNSIMGYLDLLK-ERGP 398 Query: 601 SLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-- 656 SLN Q S++++ I S LL++V +I+D++T++AG +K+ L DL++EV+ Sbjct: 399 SLNLPQDASEWLDTIQRSGYHLLSVVEEIMDMSTIEAGKLKVREDRFNLRDLVSEVEHLM 458 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAA 713 S+ + ++R++ + DR ++ Q+ +L NA+ F+ +G+ + +++ Sbjct: 459 SLGAQRKGLDLRVRYLKSVP-DQVTTDRGKVKQVLINLLGNAIKFTDEGTVTMEIWVESV 517 Query: 714 RDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 RD G F V+++G + + +S+F F + RG G GLGL+I SF Sbjct: 518 RDMGARSHATVCFRVRDSGPGVDPSIRRSLFQPFEKHGSRG---GAGLGLAISHSFAEAL 574 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG + + + G + + ++P Sbjct: 575 GGSLELEEVESGASFV-LKVP 594 >gi|254785978|ref|YP_003073407.1| fog: ggdef domain containing protein [Teredinibacter turnerae T7901] gi|237684430|gb|ACR11694.1| putative fog: ggdef domain containing protein [Teredinibacter turnerae T7901] Length = 718 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 11/250 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S + E ALTE A R K +F+ +S+E R+PL +IIGF+ L+ ++ Sbjct: 462 SSQLEVALTEAETANRA----KTAFLAKMSHEFRTPLNSIIGFSRRLQDKLKHQVDEFHY 517 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + I + LL LVNDI+D+ +++G +KL +N+LL E +++ Sbjct: 518 EAIRRIHTNGHHLLALVNDIIDMTAIESGGVKLRAHEESVNELLQEAVAECQIYAERSDV 577 Query: 668 RI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSV 723 R+ K ++ L V DR +++QI +LSNA+ + +GS + + D F V Sbjct: 578 RLVKKELAVDVL--IVCDRNKVVQILVNLLSNALKATRRGSVQLSVKQLLEDREHIYFEV 635 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I E + +F +F R G RG GLGL +V F+ +HGG V ++S T Sbjct: 636 VDTGIGISEQDQQKLFKKFSQLESRIGSERGTGLGLFLVREFVKMHGGSVDLTSELGVGT 695 Query: 783 TINCRIPSKE 792 T ++P K+ Sbjct: 696 TFTVKLPVKQ 705 >gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489] gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 543 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 14/225 (6%) Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 N+ALRKA D +K++F+ ++S+E+R+PL I+GF+ LL + + +Y I Sbjct: 309 NDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEK 368 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673 + +L+ L++DILDL+ +++ M+ N S LN + ++ +M N++ +++I+ Sbjct: 369 NGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADI-----ARMQRLNVKPGVELIA 423 Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D + S AD RL Q+ + +++NA+ F+S+GS I R D V++ G + Sbjct: 424 DLPAEDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMS 483 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 E++ VF RF Q G GLGL+I ++ + GG + S Sbjct: 484 EEVIAHVFERFYKGDSFVQ--GTGLGLAICKTIVEHFGGEIRAES 526 >gi|60682633|ref|YP_212777.1| putative two-component regulator sensor kinase [Bacteroides fragilis NCTC 9343] gi|60494067|emb|CAH08859.1| putative two-component regulator sensor kinase [Bacteroides fragilis NCTC 9343] Length = 756 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +T +N+ D + E+ L E + KA E+K SF+ ++S+E+R+PL I+GF+ Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554 Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL + + ++ QY++ I+ +S +LL L+NDIL+L+ +++G M + L+ L+ Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614 Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + Q+ I ++H ++ +G+ G V D+ RL+Q+ + L+NA F+ +GS Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP+ K +F RF Q G GLGLSI + I Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726 Query: 766 NLHGGHVSISS 776 G +S+ S Sbjct: 727 EKLQGRLSLRS 737 >gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 499 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+ELR+PL IIG+++LL + + + I + T LL L++DIL Sbjct: 245 KSTFLANMSHELRTPLNAIIGYSELLIEDAVDAQEEDLESDLRRIHRAGTHLLGLISDIL 304 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG M L Y L +L++V ++A + R G+ GS AD R+ Sbjct: 305 DISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSGQPGSIYADPVRVR 364 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDF------------IFSVKNNGSSIPEDMCK 736 QI +L NA F+ G T+ L+ A + D+ +F V + G + ED Sbjct: 365 QILINLLGNACKFTENG-TISLRIAIEGDDYAAGHDKSTGNAILFEVTDTGIGMSEDQMA 423 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F F R+ G GLGL++ F + GG V + S +T R+P ++ Sbjct: 424 RLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQGSTFMVRLPMRD 481 >gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] Length = 1214 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 18/258 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L +Q ++ Sbjct: 751 QARRALEERAEQLAISSRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNLTPRQVEF 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LL L+NDILDL+ V+AG M ++ I L L+ ++ + A + + Sbjct: 811 AKTIHEAGTALLQLINDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDKELAF 870 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 V D + D QRL Q+ +LSNA+ F+ +G V L+ R D Sbjct: 871 TVRLDPSAPQEIYTDEQRLQQVLRNLLSNAIKFTHEGE-VRLEVGRAPADVQYADEALKN 929 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F V + G I + +F F R+ G GLGLSI L GG + Sbjct: 930 TPDMLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLSICRQIARLLGGEI 989 Query: 773 SISSSDEGVTTINCRIPS 790 ++S+ +T +P+ Sbjct: 990 HVASTPGEGSTFTLYLPA 1007 >gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM603] gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM603] Length = 1171 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ Q LT N +T+ E AL + +A E +N F+ VS+ELR+P+ ++G Sbjct: 608 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 667 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + + S +SQ + + +S L + VNDILD + ++A ++L+ +T L D Sbjct: 668 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 723 Query: 650 LLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L + +S + V D +L V D RL QI + +LSNA+ F+ KGS Sbjct: 724 ELCPLLRSFEATADLQGLDFIVYWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 782 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 I + F F V + G + E S+F FV RR G GLG+SIV + + Sbjct: 783 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 841 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L GGH+ + S + TT+ +P Sbjct: 842 ELMGGHIHVESEIDQGTTVRVSLP 865 >gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 733 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E ++ + K F+ +S+++R+P+ +IG LL SKL Q+ + Sbjct: 214 RELVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQASLAK- 272 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 +S+ LL+L+NDILD + V+AG M L Y + D L + + IA + E + + + Sbjct: 273 --SSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILE 330 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNN 726 ++D + AD R+ QI S I+ N++ F+S+G I KA D + I + ++ Sbjct: 331 VTDIEQNMIKADPGRIRQILSNIVGNSIKFTSEGFIAI-KAILDVTEPTDARLIIEMSDS 389 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IPED ++F+ F R+ G GLGL+IVE L G V + S Sbjct: 390 GIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKS 441 >gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator [Dokdonia donghaensis MED134] gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator [Dokdonia donghaensis MED134] Length = 1216 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + L E ++D +K++F+ ++S+E+R+P+ I+GF++LL+ + Sbjct: 827 DITEQKKLSGELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNISE-- 884 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ Y+E + LL+ +++I+D++ +++ I+ + S + LN L++++ K+ Sbjct: 885 EKKDIYLELLEKEGHRLLSFISNIVDISKIESNIINIENSHLNLNSLIDDLYSKYQLKLE 944 Query: 664 ENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 NI+++V +SD + D +L+QI S +L NA+ F+ +GS ++ Sbjct: 945 GTNIKLEVNKALSDTD-SAIETDENKLVQILSNLLENAIKFTKEGSIEFGYTLKEEI-LQ 1002 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F VK++G I E+ K++F+RF + R Q GVGLGLSIV+ I + G V I S Sbjct: 1003 FYVKDSGIGIDEEEQKNIFDRF-TQGKREQTHNLGVGLGLSIVKGLIKILNGSVWIES 1059 >gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1] Length = 949 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 808 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G L +L + L + + +VT+ +R L E Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVNLVYESSDESL-MIET 555 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|149174810|ref|ZP_01853435.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846504|gb|EDL60842.1| probable sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 529 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 121/235 (51%), Gaps = 4/235 (1%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N LRK ++ + FV +VS+E R+PLT I + L++ +G +N +Q Q ++ S + Sbjct: 158 NRRLRKLNQTAHRFVDNVSHEFRTPLTVIKDYVSLVREGLVGEINKEQGQMLDIASIRTD 217 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L N+V+D+LD++ ++AG++ L D++ V + K I + +D L Sbjct: 218 ELNNMVDDMLDVSKLEAGLLGAWRRPCQLPDIIECVCSPLTKKAAVKGIHFEADADPGLP 277 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCK 736 + D +++ ++ +++NAM F +V L + + G+ I V +NG I E+ Sbjct: 278 AIYCDSEKVGRVIVNLVTNAMKFCGNPGSVRLWTEERAEQGEIIIGVSDNGPGIDEEGLA 337 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF + +G GLGL+I + ++L+ G +S+ S TT + +P Sbjct: 338 EIFQRFKQLKTQLDSSTKGFGLGLNIAKELVDLNFGEMSVESQVGTGTTFSFSVP 392 >gi|114706370|ref|ZP_01439272.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114538231|gb|EAU41353.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 1146 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 564 KADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621 +AD + K + VS+E+R+P+T ++GF D ++ G + N + Y+ I SS +L Sbjct: 909 EADSVRKTQLLASVSHEIRTPMTAVLGFADAIEGEAFGPIGNPRYLDYIADIKRSSRHVL 968 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +LVND+L+L+ +AG ++L++ T+ LN ++ EV + I ++ + V Sbjct: 969 DLVNDLLELSKAEAGGLELDFRTVALNQVVGEVVSMMQPVAGGARIVLRSNLPPSVPQVV 1028 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE---DMCKS 737 AD + + QI + ++ NA++ + G +I+ + R++G ++NG + E + K Sbjct: 1029 ADERSIRQIMTNLVQNAINSTPAGGQIIVSSQYREDGSVTLRCRDNGVGMNEKELEFAKQ 1088 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F R + +RRG GLGL + + +G ++I S+ + T + R P + Sbjct: 1089 PFGRPKLDGGP-RRRGTGLGLPLAYAMAEANGAAIAIDSAPQNGTMVELRFPPGQ 1142 >gi|111220737|ref|YP_711531.1| putative two component hybrid sensor kinase [Frankia alni ACN14a] gi|111148269|emb|CAJ59940.1| putative two component hybrid sensor kinase [Frankia alni ACN14a] Length = 618 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ AL +A+E K F++ VS+ELR+P+ +++G LL SL +Q + VE I Sbjct: 230 LDERGIALTRANEAKTRFLRSVSHELRAPVNSVLGLARLLLDPAGDSLTDEQRRQVELIL 289 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ LL LVND+LDL+ ++G ++ + + +L + S+ + + + D Sbjct: 290 ASTKDLLTLVNDLLDLSKAESGRLEPALEQVDIRAVLAHLDGSLRPLATRPGVELVIEED 349 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI-FSVKNNGSSIP 731 G++G D L ++ ++ NA+ F+ G V + AAR D GD + F V++ G I Sbjct: 350 GEVGPLYTDETLLGRVLRNLVGNALKFTEHGE-VRVTAARTGDAGDTVTFVVRDTGIGIS 408 Query: 732 EDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 + + VF F + +H R RG GLGL L GG + + S Sbjct: 409 AEDVEQVFEEFYQARSHLHARTRGTGLGLPYARRVCELLGGRLDLVS 455 >gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 933 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii TCDC-AB0715] gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] Length = 1154 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 8/261 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + L + A +A++ K+ +V +S+ELR+PL +I+G++ LL+ Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + L+ + + IS S L +L++ +LDLA ++ G + LN + + + ++ Q Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N++ L +V D++RL Q+ +L NA+ F++ G T+ LK Sbjct: 770 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +++ G I E + +FN F SN +G G+GLGL IV+ ++L GG +S Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLS 888 Query: 774 ISSS-DEGVT-TINCRIPSKE 792 ++S ++G I +PSKE Sbjct: 889 VTSQLNQGSQFKIKFYLPSKE 909 >gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BL21(DE3)] gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 933 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2] Length = 912 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 8/261 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + L + A +A++ K+ +V +S+ELR+PL +I+G++ LL+ Sbjct: 410 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 469 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + L+ + + IS S L +L++ +LDLA ++ G + LN + + + ++ Q Sbjct: 470 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 527 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + N++ L +V D++RL Q+ +L NA+ F++ G T+ LK Sbjct: 528 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 586 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +++ G I E + +FN F SN +G G+GLGL IV+ ++L GG +S Sbjct: 587 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLS 646 Query: 774 ISSS-DEGVT-TINCRIPSKE 792 ++S ++G I +PSKE Sbjct: 647 VTSQLNQGSQFKIKFYLPSKE 667 >gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus Nitrospira defluvii] Length = 578 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 11/256 (4%) Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 Q FV ++++ + E L EA A K+ F+ ++S+E+R+P+ ++G T+L Sbjct: 290 GTQQFTIFVQDISERKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTEL 349 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L T+ L N Q +Y + S T LL+++NDILD + ++AG + L Y L LL E Sbjct: 350 LLTTPL---NDTQRRYAHTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTE 406 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + + V + D RL QI + ++ NA+ F+ G+ + Sbjct: 407 TIGLYHEQARKKGLALSVTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETGTVAVFVR 466 Query: 713 ARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767 + G V + G IP + +F+ F S A R G GLGL+IV+ + + Sbjct: 467 PDEGRPGRVRIEVTDTGIGIPLQAQEKIFDSF-SQADGSMTRKYGGTGLGLAIVKQLVGM 525 Query: 768 HGGHVSISSSDEGVTT 783 GG + ++S+ TT Sbjct: 526 MGGQLGLTSTPGQGTT 541 >gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 460 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 125/232 (53%), Gaps = 5/232 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A+R+ ++I++ FV + S+EL++PLT I GF +L++ + + +S Y+ I + + Sbjct: 230 AVRRTEQIRSEFVANASHELKTPLTAIKGFVELMEADIITEPDQIKS-YLGRIRKETERM 288 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + L+NDIL L+ +++ ++ + + +S+A H+ N+ ++V +G +G+ Sbjct: 289 IELINDILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQV--EGDVGTV 346 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 A+ R++Q+ ++ NA+ ++ V + +G+ F V + G IP + + VF Sbjct: 347 RANPDRMMQLALNLIDNAVKYNKPDGNVRVTIISKDGNVHFCVNDTGVGIPPEARQRVFE 406 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF V ++ G GLGLSIV+ + L+ G + I S T+I +P+ Sbjct: 407 RFYRVDKGRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILPA 458 >gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1119 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 18/258 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L + K+ F+ ++S+ELR+PL +++ L+ + G+L +Q +Y Sbjct: 662 QARQELEERANQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNLTERQVEY 721 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I + + LL L+NDILDL+ ++AG M + + I ++ L++ V+ + + + + + Sbjct: 722 AETIHGAGSDLLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQKGLEL 781 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNGDF 719 +V ++ D QRL Q+ +LSN++ F+ G V+L D+ + Sbjct: 782 RVRVAPSVPAHLFTDEQRLQQVLRNLLSNSVKFTETGHVELVVDTVGDVVLGGPEDSNEV 841 Query: 720 I------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F+V + G I +D ++VF F RR G GLGLSI L GG Sbjct: 842 TLEPAVSFAVSDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAKLLGGG 901 Query: 772 VSISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 902 IRAESQRGRGSTFTLFLP 919 >gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] Length = 1611 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TFV+V+D RAE L E + +K+ F+ ++S+E+R+PL IIG + L S Sbjct: 853 TFVDVSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKS--- 909 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+++QS YV + + LL ++NDILD + ++AG + + S L+ +L V + Sbjct: 910 GLDARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGF 969 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718 K + + + ++ V D RL QI +NA+ F+ +G ++++ R+ G Sbjct: 970 KAAAKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQGEIHLLVRLERNEGA 1029 Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + F V++ G I + +F F RR G GLGL+I +S L GG V Sbjct: 1030 RVWLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVG 1089 Query: 774 ISS 776 + S Sbjct: 1090 VRS 1092 >gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division OP8 bacterium] Length = 350 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 4/237 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616 + + L A K+ + ++S+ELR+PL I+GF+ +K G + ++K +Y++ IS S Sbjct: 103 ERDILLSASRAKSEVIANMSHELRTPLNAILGFSSAIKCETFGPMGHTKYREYIDDISHS 162 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL+L+NDILD++ ++AG M L+ +I + + E + EN + + Sbjct: 163 GSHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAFHVVECLAVENQVMLAYDIAEN 222 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMC 735 L D +R QI + SNA+ F+ G +V L D+ G SV + G + D Sbjct: 223 LPPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLDDQGRHTLSVTDTGIGMSADEL 282 Query: 736 KSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 K+ F N+H +R G GLGL + + + LH G + I+S+ T + P+ Sbjct: 283 KNALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTLDITSTKGTGTIVTVVFPA 339 >gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UM146] Length = 949 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1798 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1312 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1371 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1372 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1431 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ VI AA D D I Sbjct: 1432 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEA 1491 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I + +F F R+ G GLGLSI Sbjct: 1492 GSLADADADLIAFSVTDTGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1551 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1552 LLGGEIHAASEPGRGSTFTLYLP 1574 >gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia sp. 4_1_40B] gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular synthesis regulator component C gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1] gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520] gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482] gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88] Length = 949 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|116617477|ref|YP_817848.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096324|gb|ABJ61475.1| Signal transduction histidine kinase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 361 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 139/261 (53%), Gaps = 6/261 (2%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P A T ++V++++ AE + E R+++ K+ + ++S++LR+PLT IIG+ L Sbjct: 104 PYAPTTQALIDVSNTI-AENTRRIREEE-RQSERSKDEMITNISHDLRTPLTAIIGYLGL 161 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S ++ +Y+ + S + LV D+ + + A LN +++ LNDL + Sbjct: 162 VEMGQALSEKDRK-KYIHTAYSKSNQMKVLVEDLFEYSQTQAQDAALNITSLSLNDLFGQ 220 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + E NI + +++ ++ AD +L ++ ++SNA + + + L A Sbjct: 221 LLAGYELEAQEKNIALNQLTNPEMIVIEADSDKLARVLMNLVSNAFKYGDGATFIKLTAQ 280 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 D+ + + V N+G IP++ +F+RF V ++ + G GLGL+IV+ + H G Sbjct: 281 IDDKNVVIRVTNDGVKIPDEAIGDIFDRFYRVESSRNSKTGGTGLGLAIVKGIVVQHHGS 340 Query: 772 VSISSSDEGVTTINCRIPSKE 792 V++ S D+ +T+ +P K+ Sbjct: 341 VAVESDDD-MTSFIITLPLKQ 360 >gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 781 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 11/225 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E ++ A++ K+ F+ +S+E+R+P+ +IG ++L+ + LN Q Y++ I S Sbjct: 258 ERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDT---PLNDSQKHYLDVIFRSGES 314 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678 LL ++NDILD + ++AG M L LN+LLN+ Q + H+ +I + IS Sbjct: 315 LLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPT 374 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGD----FIFSVKNNGSSIPED 733 D RL QI ++ NA F+S G ++L K+ +D FS+ ++G I ++ Sbjct: 375 QLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGISKE 434 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F F RR G GLGL+I + L GG + + S Sbjct: 435 IQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVES 479 >gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli] Length = 933 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 135/260 (51%), Gaps = 8/260 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + ++ +++T+ + E L E +A +K++F+ ++S+E+R+P+ IIGFT+L+ Sbjct: 630 KVIMFMIDITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLD 689 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ + Q YV I+ S+ LL+L+NDILD A ++ G+++L + +N L++ V Sbjct: 690 TE---MKPDQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVIS 746 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ + + + +++ I D G + R+ Q+ ++ NA+ F+ GS V LK Sbjct: 747 TLWLQARKKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDIGS-VKLKVYAQ 805 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 N D I F V + G I D ++F F RR G GLG +I + + GG + Sbjct: 806 NQDVIHFDVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTI 865 Query: 773 SISSSDEGVTTINCRIPSKE 792 +S + + +P K+ Sbjct: 866 KATSQLGKGSCFSINLPLKK 885 >gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 782 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 15/248 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL+ E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 387 DISDRRVAEIALSTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 444 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + LN + L+ +L E ++ Sbjct: 445 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMAT 502 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +I + + +LG VADRQRL+Q+ +LSNA+ ++ V ++ + G Sbjct: 503 DASIELSELPQLPDELG-VVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSAGRVTV 561 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 SV + G I + +F F G GLGL++ +S + + G +S+ Sbjct: 562 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGGLSVD------ 615 Query: 782 TTIN--CR 787 TT+N CR Sbjct: 616 TTLNEGCR 623 >gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] Length = 1188 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 126/532 (23%), Positives = 224/532 (42%), Gaps = 69/532 (12%) Query: 293 IDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348 ID++++ +L T E+L + A+ FD + L N +FV L + Sbjct: 373 IDITEQKQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSL-------VGV 425 Query: 349 NPSNDELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406 P E LR K L + + +T +F W +G+ V+ Sbjct: 426 EPERFERGRPLRGLTKDVLAKLPSTETGIRPMFLHIARRSPADFEWRRNDGEIYAVLGRP 485 Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466 P GG + +F N+T + + + ++ +SEG A+F + + L N +R + Sbjct: 486 MPNGGYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFALFDANDILILCNETYRRM 545 Query: 467 WKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSL----- 514 + + PG +R+ AAT F A + ++ ER L Sbjct: 546 YGKSTAYIRPGRRFVDIVRDAAATGQ-----------FPAAVGREEEWVAERLELHRNPP 594 Query: 515 -QGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAE-----------------RAL 555 Q TL+ L+D VL + + ++ ++T+ VR E R L Sbjct: 595 DQPTLQALADGRVLLVAENRTSDGGSVGIRSDITERVRTENDLRAARDELEEQAQSLRDL 654 Query: 556 TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ +A R +A K+ F+ +S+ELR+P+T ++G +L ++ L+ +Q YV Sbjct: 655 AEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLLGMIELASRTE---LSKEQQGYVR 711 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S+ LL L+NDILD + ++AG ++L T ++ +V + + ++ Sbjct: 712 IMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFGLFQAQASAKGLVLEA 771 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNN 726 + ++V D R+ QI S ++SNA+ F++KG TV L A + V + Sbjct: 772 DLRPSVPAWVRGDPLRVKQILSNLISNAIKFTTKGRITVRLGATEGPSGLVRLQGEVIDT 831 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + + +F F R+ G GLGL+I GG +++ S Sbjct: 832 GQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITVES 883 >gi|146280700|ref|YP_001170853.1| two-component system sensor protein [Pseudomonas stutzeri A1501] gi|145568905|gb|ABP78011.1| two-component system sensor protein [Pseudomonas stutzeri A1501] gi|327478968|gb|AEA82278.1| two-component system sensor protein [Pseudomonas stutzeri DSM 4166] Length = 289 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LR+A E+K+ F+ ++S+E R+PL +I+ T LL G L+ +Q + V ++S Sbjct: 42 LDTQAEQLRQASELKSRFLSYMSHEFRTPLGSILSITRLLSDELDGPLSPEQHKQVRFVS 101 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++++ L +V+D+LDLA ++AG + ++ + + DL + ++ + + + + Sbjct: 102 SAASELSEMVDDLLDLAKIEAGRVSISPAWFDMLDLFSALRGMFRPIVEGSPVDLIFEEP 161 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L F D ++L QI +SNA+ F+++G + F+V + G I + Sbjct: 162 QGLPRFYTDDKKLAQILRNFISNALKFTTQGEVRVSARMETPQQVRFAVTDTGIGIAPQL 221 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F V + + + RG GLGL++ + F L GG V + S Sbjct: 222 HDRLFEDFAQVDSPLQKRLRGTGLGLALCKRFAELLGGRVGLQS 265 >gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 1106 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 6/245 (2%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A + +VTD+ R+E L E A A+ K+SF+ +S+E+R+PL ++G +LL Sbjct: 484 RAAVLRALNDVTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTPLNGMLGSIELL 543 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 ++L +S+Q + + +S L+ ++ND+LD + ++AG M L + +++ +V Sbjct: 544 GLTRL---DSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQLRPCRVEEIVEDV 600 Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + A + +R+ ++D L +AD +L QI + ++SNA+ F+ +G ++ Sbjct: 601 TRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKFTEQGKVIVTAMR 660 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + G V + G I + +F FV R G GLGLSI + L G Sbjct: 661 KPGGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGLSICRRLVGLMSGE 720 Query: 772 VSISS 776 + + S Sbjct: 721 IRLVS 725 >gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 509 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 8/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER E +A A++ K+ F+ +S+ELR+PL IIGF++L+ + G L +Q Y + Sbjct: 240 ERMAVEGQKAAEAANQAKSEFLAMMSHELRTPLNAIIGFSELMASGLHGPLPPRQHGYAK 299 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LLN++ +ILDLA ++ + L I L ++ + IA + E R++V Sbjct: 300 DIQQSGRHLLNVIGNILDLAEAESKQINLFEVDIELEAVIEPCLRLIAPQASEG--RVQV 357 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSS 729 + G + D +L Q +LSNA+ F+ G TV + + + +G +V + G Sbjct: 358 TATLPTGVRLLCDVTKLRQTLLNLLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTGIG 417 Query: 730 I-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I PED+ + + F + S HR R G GLGL + ++ HGG + ++S TT Sbjct: 418 IRPEDVPRILKRFEQVESQMHR-SREGAGLGLPLAKALTEAHGGVLEVTSDFGHGTTARI 476 Query: 787 RIPS 790 +P+ Sbjct: 477 ILPA 480 >gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 502 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 15/228 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK EA +A K +F+ +S+ELR+P+ ++G +L ++ N ++ + + AS Sbjct: 116 EKAEAENRA---KGAFLSRMSHELRTPMNAVVGLAELAGMTEGVPENVRE--MLVKLRAS 170 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL+L+NDILD++ +D+G+++ L +LL E++ + T+ + + ++ +D Sbjct: 171 SHYLLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEAGKRGLICEMEADVD 230 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSI- 730 D RL Q+ +LSNA F+ +G TV L+ G DF F V + G I Sbjct: 231 HSRVTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSADFDFRVTDTGVGIA 290 Query: 731 PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 PED + F + +N R Q G GLGL I S + L GG + + S Sbjct: 291 PEDQERIFDTFEQMGTNYSRSQ--GTGLGLPISRSIVQLMGGELRVKS 336 >gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 902 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 131/255 (51%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T AE AL + +A A++ K+ F+ ++S+E+R+P+ ++G LL+T+ L Sbjct: 487 IDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGMLQLLETTP---L 543 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +++Q+ Y+ + ++ L L+ DILDL+ V+AG M++ + + D+++ V A Sbjct: 544 DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDIIDSVTGLFAVTA 603 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDN 716 + ++ ++ G + D R+ Q+ ++ NA+ F+ +G + +A D Sbjct: 604 RNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMDISALSAKDEDT 663 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 V + G I ED +F F V N+ +G GLGLSIV + L G +SI Sbjct: 664 CRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHRLVALMAGTISI 723 Query: 775 SSSDEGVTTINCRIP 789 S+ T+++ +P Sbjct: 724 ESAPGEGTSVHVVLP 738 >gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 765 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 14/244 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+VT+ + L E EA A +K+ F+ +S+E+R+PL +IG LL ++L Sbjct: 361 LVDVTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL-- 418 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + +Q +Y E I S +LL L+NDILD + ++AG M+L L L+ E +A + Sbjct: 419 -SDEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPR 477 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719 E N+ + ++ + + D QR+ Q+ ++ NA+ F+ GS I R+ GD Sbjct: 478 AREKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDA 537 Query: 720 IF---SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 + +V + G I P +M + +F F S A R G GLGL+I + ++ GG V Sbjct: 538 LLLEVAVADTGIGISPGEMMR-IFEPF-SQADASTTRQYGGTGLGLAICKRLVDRMGGTV 595 Query: 773 SISS 776 + S Sbjct: 596 VVKS 599 >gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509] Length = 708 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 198 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 257 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 258 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 314 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 315 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 372 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 373 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 432 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 433 VDSEPGMGSQFTVRIP 448 >gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2] gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2] Length = 609 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 43/348 (12%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 ++S+GV GR+ L N ++ EN ++ G HI Sbjct: 270 NMSDGVVATDDHGRVILVNRRASAMLGVNENEMT-GRHI--------------------- 307 Query: 502 AIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A++ D E T L S S + P + ++ V T R E +T Sbjct: 308 AVLLGIDPEE-----TEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTI 362 Query: 560 EALRKADE------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVE 611 L+ E + FV +VS+ELR+PLT I + + L G++ Q ++V Sbjct: 363 AVLQDVTEQEEMETTRREFVANVSHELRTPLTTIRSYAEALDD---GAMAEPQLAERFVG 419 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I + ++ LV D+L L+ +D+ L + ++L+EV + +M EN+IR + Sbjct: 420 VIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGM 479 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSI 730 + +G V DR ++ Q+ ++SNA+ ++ +G ++ ++A R+N G SV++ G I Sbjct: 480 FVEQGIGKVVIDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGI 539 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 P+ +F RF V A G GLGLSI + HGG + + S Sbjct: 540 PKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLES 587 >gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 1136 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 2/227 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R + EKN L +AD +K+ F+ + S+ELR+PL IIG + L+ +G + Q+ + Sbjct: 419 RQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRL 478 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S+ L LV+D+LD+ + G M+L+ + + L V Q + + + + Sbjct: 479 ITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTFQVDPAKFHLD 538 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD R QI +LSNA+ + I R +G +++++G I Sbjct: 539 LPEDLPAVTADPVRFEQILFNLLSNAVKYGGGSEVHITAERRASGQMALAIRDHGPGIAA 598 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 D + +F+ + GQ G GLGL+I +L G + +SS+ Sbjct: 599 DSMERIFHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSST 645 >gi|260587289|ref|ZP_05853202.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583] gi|260542484|gb|EEX23053.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583] Length = 515 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA AL KNE LR + ++ +S++LR+PLT+I G +L ++ KQ Q Sbjct: 274 RAAAALMAKNEQLRA------NLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQL 327 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S L+NLV ++L + ++ G MKL + +L +++ E + + ++ +R+ Sbjct: 328 YEDIYEDSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRV 387 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ + L AD + ++Q+ ++ NA+ ++ KGS ++++ ++ + + SV +NGS Sbjct: 388 QLSEN--LILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSG 445 Query: 730 IPEDMCKSVFNRFVS-NAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I ++ + +F F + N+H RR + LGL++ +S ++ HGG + + Sbjct: 446 ISDEAKEYIFEMFYTGNSHAADSRRSLWLGLALCKSILHAHGGDIFVEDCQPHGARFTFT 505 Query: 788 IPSKE 792 +P+KE Sbjct: 506 LPAKE 510 >gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] Length = 492 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 11/243 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++T V SV R TE+ + +E+K F VS+ELR+PLT I L+ + Sbjct: 231 PLITGEEVVGSVLTVRDATEQE----RVEELKRQFTAVVSHELRTPLTAIKASLRLVTSG 286 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LG L + ++ + ++ L LVNDILD+ +DAG M L + L DL + Sbjct: 287 VLGPLPEEPARLLRIADENADRLAALVNDILDVERLDAGTMPLEPEDVDLADLARAGVEQ 346 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + + V+ + AD R+ Q + ++ NA+ FS G V + R Sbjct: 347 LESTAVAAGVEL-VLGEVGPARVHADPHRIAQALTNLVGNAVKFSEAGGRVEVTCRRTAR 405 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + +V++ G IP D ++VF+RF S+A R + G GLGL+I + + GG V Sbjct: 406 EARLAVRDEGRGIPHDQLEAVFDRFRQVYASDAQR--QSGSGLGLAITKGIVERSGGRVE 463 Query: 774 ISS 776 + S Sbjct: 464 LRS 466 >gi|319900255|ref|YP_004159983.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415286|gb|ADV42397.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 700 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 6/241 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +++ L + E KA +K F+Q +S+E+R+PL +I+GF+ ++ S + N ++ Sbjct: 461 SQKELLQAKELAEKASNMKTEFIQSMSHEIRTPLNSIVGFSQII--SSMSKDNDDTKEFA 518 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I S LL+LV+D+LD+A +D+G + + + + IA + + + Sbjct: 519 EIIEQGSNNLLHLVDDVLDIANLDSGTEIETNTGVDATAICRQCVADIAPHLRP-CVSLN 577 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + ++ + F ++ RL QI +L NA F+ KG +ILK A+D F+V + G I Sbjct: 578 LHTESEEFYFYSNPMRLSQILLHLLRNAAKFTEKGE-IILKWAQDKEHIFFTVTDTGIGI 636 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 P+D + VF RF Q G GLGLSI + + GG +++ SS G +P Sbjct: 637 PKDKQEFVFERFTKINTFAQ--GTGLGLSIGRTCADRMGGSLTLDSSYTGGCRFVLTLPL 694 Query: 791 K 791 K Sbjct: 695 K 695 >gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1082 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 42/359 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 IDH+++G+ V +G+I +NPA +L+ + IR CS ++ D+ Sbjct: 485 IDHIADGLLVTDAEGKITRTNPALANLFALGD------LDIR--GKLCSEAFS----GDV 532 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAER 553 ++ S + QG ++L D + + + P+ L ++ SV R Sbjct: 533 LNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIG---SVVLFR 589 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKL 599 +T + E D +K F+ VS+ELR+PLT+++GF L++ +K+ Sbjct: 590 DITAEKEI----DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKI 645 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ + V+ I + L NL+ND+LD+A ++AG + + + + ++ + Sbjct: 646 NRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATT 705 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + I++ V L + D +L+Q+F ++SNA+ F+ G+ V LK Sbjct: 706 SLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETGN-VTLKLMAVKSAI 764 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SVK+ G I + VF +F V N + +G GLGL I + I HGG + + S Sbjct: 765 KVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVES 823 >gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 758 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607 ++ L + A RKADE K+ F+ H+S+E+R+PLT I+G +L +G+ N Sbjct: 367 KQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAEL----AIGNPGNPGVQ 422 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y+ I S LL+++NDILD + V+AG ++L + +L + E + Sbjct: 423 EYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGV 482 Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI-- 720 + ++ +L + V D R+ QIF ++ NA+ F+ KG + L + ++ + Sbjct: 483 TLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELRLTGLTSEENSARMMLH 542 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F + ++G IP D S+F RF A R +G GLGL+IV+ I GG + + S++ Sbjct: 543 FEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTE 602 Query: 779 EGVTTINCRIP 789 TT IP Sbjct: 603 GVGTTFFFNIP 613 >gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 721 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + E N+A ++AD ++K+ F+ ++S+E+R+P+ IIG T LL + SL +Q Sbjct: 200 IKELNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTGLLLDT---SLKKEQRDLTL 256 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S+ LL ++NDILD + ++AG M+LNY ++ L L+ V + +A+ + + Sbjct: 257 TVKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFLDGVMEMVASSAQSKGLNLAY 316 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGS 728 D L + + D RL Q+ +LSN + F+ G + +A D+ F V + G Sbjct: 317 FIDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLTVSALDSDSNRLQFKVTDTGI 376 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 I E+ +FN F R G GLGL+I + ++L GGH+S+ S+ Sbjct: 377 GISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILSLLGGHISVKSA 427 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 20/231 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +NEA A+ K+ F+ +S+E+R+P+ IIG TDL + +G +SK S Y+ +I S+ Sbjct: 669 RNEA-EVANHAKSEFLAAMSHEIRTPMNGIIGMTDL---ALMGGCDSKASSYLGFIKESA 724 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+NDILDL+ V++G M+L L L + Q + + + ++ Sbjct: 725 HSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLRLSAQRKGVELSWYVGPEV 784 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------FIF 721 + D RL Q+F+ ++ NA+ F+S GS I + D Sbjct: 785 PELLMGDDLRLRQVFTNLVGNALKFTSWGSITIAIGVAEAADSRKTPEPGASQEEISLQA 844 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +V + G IP D + VF F + H + G GLGL+I + + + GG + Sbjct: 845 TVSDTGIGIPPDKLQHVFESFATLGHDKEYGGTGLGLAITKKLVEIMGGTI 895 >gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 616 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 8/219 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 R D+ K + V VS+E+R+PLT++ LL +G L KQS+ +E S LL Sbjct: 376 FRLLDDAKTNLVATVSHEIRTPLTSVRMVLHLLLEKTVGVLTPKQSELIETARDDSERLL 435 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGS 679 ++ND+LDL ++ G L +L+ + + A E N+ +V D +L Sbjct: 436 RILNDLLDLTRLEQGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEV--DPELPL 493 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738 DRQR+ +F+ +L+NA+ +S GS VI A D+ D F V++ G IPE+ + Sbjct: 494 VWVDRQRIDHVFTNLLNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDHI 553 Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 F+RF GQ + G GLGLSI + HGG + + S Sbjct: 554 FDRFYRVP--GQTKTGAGLGLSIAREIVIAHGGRIGVRS 590 >gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 20/253 (7%) Query: 542 FVNVTDSVR---AERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFT 591 FV V+D A+R L + N L A+ K+ F+ ++S+E+R+P+ I+G + Sbjct: 550 FVQVSDITELKAAQRKLADANAELAARTRQAESANAAKSEFLANMSHEIRTPMAAIVGLS 609 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL+ S+L N Q + + +S L+ +++D+LDL+ ++AG ++++ S L LL Sbjct: 610 HLLENSRL---NPDQQDLLRKMRGASKSLMAVIDDVLDLSKIEAGELRIDRSAFSLQALL 666 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++++ +A H+ + + + D L + D RL Q+ + +LSNA+ F++ G ++ Sbjct: 667 DDLRGLMALSAHDRTLELVMRCDAGLPDQLDGDLMRLRQVLNNLLSNALKFTTVGEVLLQ 726 Query: 711 KA--ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 A AR +G F+V+++G I +F F RR G GLGL I Sbjct: 727 VALVARQSGRLRLRFTVRDSGIGISAAEQARLFRPFAQVDASTTRRYGGTGLGLVISRRL 786 Query: 765 INLHGGHVSISSS 777 + L GG +S+ S+ Sbjct: 787 VRLMGGDISLRSA 799 >gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 649 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 18/251 (7%) Query: 553 RALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 RA E EALR+A EI N F+ VS+ELR+PL IIGF+DLL G L ++ + Sbjct: 389 RAQRELQEALRQA-EIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKVFGPLGDERYE 447 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LL+L+ D+LDL+ ++ G ++L + DL E++ ++A Sbjct: 448 GYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLV---DLPIEIQAAVAMVRARRGQ 504 Query: 668 RIKVI----SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 I I ++G + AD + + QI ++SNA F+ +++ A + +V Sbjct: 505 EIASIQIEVAEG-FPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDDGISIAV 563 Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 ++G I P D K V F +R RR GVGLGL + ++F+ +H G + + S+ Sbjct: 564 IDDGIGIDPADHAK-VLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQLESAIGE 622 Query: 781 VTTINCRIPSK 791 TTI R+P + Sbjct: 623 GTTITIRLPKE 633 Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 15/269 (5%) Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359 T+ + E L++ V +A+FD+ L F N F E+++ A + + + LL F Sbjct: 6 TLPPDIAPLIEALNHADVGLAVFDRKSVLLFCNSRFQEIFDYPEALVTPGTTREALLRFD 65 Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-EN 418 +L +E + V E H+ +G+ + V+ P GG + + E Sbjct: 66 AERGELGPGNVDDLVREQLERVQYHIE-HQIELTRSSGRQIKVVNRPLPSGGNVSTYHER 124 Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478 L + L T +Q + +D+ +G+ V+ R+ +N R + + E L PG Sbjct: 125 LDDRKSLLGADLTFEALQ-QALDYAPDGLRVWDAKDRLIYANARIRRVSEAEGTPLRPGM 183 Query: 479 ----HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-- 532 HIR A E++ D A + + R + L D + +I Sbjct: 184 TFEEHIR--ARVAKNLVAEAEA-DPEAYVQQRLEMHRLGGRSYTTRLRDG--RWVVIRDH 238 Query: 533 -LPNAQTMLTFVNVTDSVRAERALTEKNE 560 LP+ T+ T ++TD R E+A E + Sbjct: 239 RLPDGGTVTTSQDITDIKRVEQAYRESEQ 267 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 13/231 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L EA A K+ F+ ++S+E+R+P+ IIG +++L L L Q Q +E Sbjct: 483 EKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDL---QRQQLE 539 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L+ ++NDILD + ++AG +L L +LLNEV Q + N+R+ + Sbjct: 540 LIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHL 599 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGD-FIFSV 723 I + V D+ +++Q+ + ++ N++ F+ KG + + + NGD +F V Sbjct: 600 IVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFTRKGQITLTVSNQPSPNSFANGDMLLFEV 659 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + G I VF F ++H + G GLGLSI + + L GG + Sbjct: 660 ADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRI 710 >gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1180 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 26/288 (9%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E ++IP+ ML + D R E L E + E K+ F+ +S+E+RS Sbjct: 451 VEVTLIPVQLGSEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRS 510 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G DL+ S+L N +Q Y + T LL+ +NDILD + ++AG M L Sbjct: 511 PLNAVLGSVDLILDSRL---NKEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEE 567 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 S L +V Q ++ K + I + ++ + + S V D QRL Q+ ++ NA+ F Sbjct: 568 SAFSPAKLATQVLQVLSPKAQDKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKF 627 Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 S G I A D + + G I E ++F F V ++H G GLG Sbjct: 628 SFGGCVAIEMWLADTDEARLCCKISDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLG 687 Query: 758 LSIVESFINLHGGHVSISSS---------------DEGVTTINCRIPS 790 L+I I GG +++ S DE +I+ +P+ Sbjct: 688 LAICAELIAQMGGQIAVKSQQGKGSCFSFDLLLKRDESANSIDTPVPA 735 >gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 23/252 (9%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KN+A A++ K++F+ ++S+ELR+PL I+GF+ LL + +L+ KQ+ + I+ S Sbjct: 409 KNKA-EAANQAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLSQKQN--LNSINRSG 465 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LLNL+ND+L+++ ++AG + LN + L LL+ +++ A K + + + K+ Sbjct: 466 SHLLNLINDVLEMSKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNIQKSSKI 525 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAARDNGD------- 718 ++ D RL Q+ +L+NA+ F+ GS + A D Sbjct: 526 PLYIYIDENRLRQVLINLLTNALKFTESGSVTLRVSTQAISLPEESATHPQNDTTQPSLS 585 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G I ED +F+ F+ + Q + G GLGL+I F+NL G + + S Sbjct: 586 LYFEVEDTGIGIAEDELDDIFDAFIQTSSGQQSQEGTGLGLAICHHFVNLMQGDIQLQSR 645 Query: 778 DEGVTTINCRIP 789 TT+ +IP Sbjct: 646 QGQGTTVFMQIP 657 >gi|16124393|ref|NP_418957.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221233076|ref|YP_002515512.1| hybrid two-component histidine kinase/receiver protein ShkA [Caulobacter crescentus NA1000] gi|13421249|gb|AAK22125.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|78057838|gb|ABB17331.1| hybrid kinase [Caulobacter crescentus CB15] gi|220962248|gb|ACL93604.1| hybrid two-component histidine kinase/receiver protein ShkA [Caulobacter crescentus NA1000] Length = 514 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 5/188 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E R+PL ++G LL+ +KL ++Q YV + S LL+LVND+L A + A Sbjct: 21 LSHEFRTPLNGVLGMARLLENTKL---TAEQRSYVTALRESGDHLLSLVNDVLHFARLGA 77 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 ++L+ + + + LL +V + ++ + HE I I L + +AD RL QI Sbjct: 78 AAIELSLAPVDIEGLLRQVAELMSPRAHEKGIEIAWAVSSPLPTILADEGRLRQILLNFA 137 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753 NA+ F+ G ++ +A D G FSV + G + D +F FV H Q G Sbjct: 138 GNAVKFTEAGGVLLTASAIDGGRVRFSVADTGPGVAPDARARIFEAFVQTDVTHATQLGG 197 Query: 754 VGLGLSIV 761 GLGL+IV Sbjct: 198 AGLGLAIV 205 >gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] Length = 929 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT+ L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIEKSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 N++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V +++ +D+ + F V++ G I E Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDLVELQFMVRDTGIGISERQQS 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 411 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 132/248 (53%), Gaps = 20/248 (8%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q +LT ++T+ +R L + E A+++K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++++ Y++ ++ ++ LL +V D+LDL+ +++G + +YS +NDLL + Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHG 276 Query: 657 SIATKMHENNIRIKVISDGKLGS--------FVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + NIR+K + KL +++ R++QI + ++ NAM F+ G Sbjct: 277 IL-------NIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEIC 329 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 + + F V + G IP +F+RF H + G GLGL++ ++ + Sbjct: 330 FGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNL 387 Query: 769 GGHVSISS 776 GG + + S Sbjct: 388 GGEMGVES 395 >gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] Length = 911 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 124/226 (54%), Gaps = 11/226 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+PL IIGF LL S+L N++Q ++++++ + LL LV Sbjct: 260 ANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRSEL---NARQREWLDHVRRACDNLLMLV 316 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683 ND+LD + ++AG ++L + + + L++EV A + + N+++ ++ D G D Sbjct: 317 NDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNLQLLGLVYDDVPGELFGD 376 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 R+ Q+ + ++ NA+ F+ +G ++ + D SV + G + + + +F Sbjct: 377 PLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVSVSDTGIGLSQACQRQLF 436 Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 + F +H+ Q G GLGL+I + GG +S+ S S +G T Sbjct: 437 DAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQGST 482 >gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 597 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 182/395 (46%), Gaps = 33/395 (8%) Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNP 461 I+T++ GG F + ++ K Q +I +++GV F DG I ++NP Sbjct: 225 ILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQLASILSSMADGVITFNRDGEILITNP 284 Query: 462 A---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 F W E+ G +A + +LFA ++ +++ +S + TL Sbjct: 285 PAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------ELFARVVR--EEKEQSTEVTL 331 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 + + +L + PL +TM V +V R +TE+ R+ D+++ F+ +VS+ Sbjct: 332 QGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE----RRLDKLRKDFIANVSH 378 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+P+ + G+++ + + + ++ + + I S + LVND+LDLA ++AG + Sbjct: 379 ELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGHI 437 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +L Y + L + V + E I + + D R+ Q+ + ++ NA Sbjct: 438 ELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIALDPDRIEQVLTNLIDNA 497 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 + + G TV L V+++GS IPE+ VF RF A R G GL Sbjct: 498 IRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFYKADKARTRSRSGTGL 557 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GL+I ++ + H G +++ S TT + +P++ Sbjct: 558 GLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] Length = 1325 Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ R E+ L + KA + K+ FV ++S+E+R+PL +IGF+DLL + Sbjct: 663 TIQDITEQKRFEKKLEKSKVEAIKASQAKSEFVANMSHEIRTPLNGVIGFSDLLMKT--- 719 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN Q +Y++ + S+ LL+L+ND+L+ + +++G ++L+ L L+NEV Sbjct: 720 PLNEVQHKYMKTVFQSANTLLDLINDVLNFSKIESGKLQLDIEKTSLIKLVNEVVDLTKY 779 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN 716 H+ + ++ + K+ ++ D RL QI ++SNA+ F+ +G V K +N Sbjct: 780 DAHKKGLEFVLVIEDKIPDYIWIDGVRLKQILMNLISNAIKFTHRGYVKLKVHFKNKTNN 839 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 I FSV++ G I + K +FN F+ ++ G GLGLSI + L + Sbjct: 840 LTTISFSVEDKGIGIAKGNQKKIFNAFIQEDASVTKKYGGTGLGLSISGKILGLMNSKLK 899 Query: 774 ISS 776 + S Sbjct: 900 LKS 902 >gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1296 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 10/253 (3%) Query: 530 IIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 II +AQ ++TF ++++ V++E+ L E ++ A++ K++F+ ++S+E+R+PL +I Sbjct: 626 IIEEEDAQWALVTFNDISNRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVI 685 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL+ + L L Q+ Y ++I S+ LL ++NDILD + ++AG +KL I Sbjct: 686 GFSDLLRKTNLNIL---QTDYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGL 742 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707 +L+ I + + N+ + + D + F AD RL QI +L NA+ F+ G+ Sbjct: 743 ELVESAVSFITFQASQKNLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFTESGN- 801 Query: 708 VILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 + LK + F V + G I K++F F R+ G GLGL+I Sbjct: 802 IALKVTKLHKEDKLKFEVIDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNK 861 Query: 764 FINLHGGHVSISS 776 + + + + S Sbjct: 862 LLKMMQSRLHLES 874 >gi|146298400|ref|YP_001192991.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146152818|gb|ABQ03672.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 813 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + + VS++L++PL+ I+G+++LL S +N+KQS +++ I SS + LV D+L Sbjct: 323 REQLISTVSHDLKTPLSTIVGYSELLGNS---DINTKQSYFIKNIKNSSEYITQLVQDLL 379 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D + ++AG + + L +++ + ++I T + NI + + D KL + V D RL Sbjct: 380 DFSRIEAGKITIEKVPFFLPEIIEDTARNIQTVYKQKNIDLIINVDEKLNTRVVGDPFRL 439 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 QI S I+ NA F+ +G I +N + F+ ++++ G I + K VF F Sbjct: 440 KQILSNIIGNAYKFTEEGHIKISSYVSENENFFVITIEDTGIGIEKGNLKLVFEEFAQAN 499 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +++ G GLGLSI + I+ GG +S+ S+ +T ++P Sbjct: 500 ENIEKKYGGTGLGLSICQKIISFMGGRISLESTFGKGSTFEIKVP 544 >gi|312886118|ref|ZP_07745738.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301400|gb|EFQ78449.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 559 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 1/218 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ DE K +F+ +S+EL++P+++I LL+ +++G +NS+Q Q ++ I + LL Sbjct: 329 FQQLDEAKTNFIATISHELKTPISSIKMSLKLLEDARIGDVNSEQRQLLQNIDDDTRRLL 388 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + ++LDLA V+ G + LN+ +++N Q++ + I IK+ L Sbjct: 389 QITGELLDLAQVETGKINLNFGNTHPQNIVNYAVQAVKFIADQKQITIKINCPDSLPDVQ 448 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD + + +LSNA+ +S+ ST+ L R FSVK+ G I +F R Sbjct: 449 ADLDKTTWVLINLLSNAVKYSASKSTIELTVKRHKDMLEFSVKDYGQGIDARYLSRIFER 508 Query: 742 FVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G + G GLGL+I + FI GG + + S + Sbjct: 509 YFKVPGAGLDKTGTGLGLAIAKDFIEAQGGKIGVESQE 546 >gi|298241118|ref|ZP_06964925.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554172|gb|EFH88036.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 5/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+SF+ S+ELR+PL ++ T L++ + + + + + Sbjct: 690 NSARKELEQRKDSFISMASHELRNPLASLKMQTQLVRKRLEKQTHHEAAALLSRVEGPVK 749 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ ++LD++ + AG ++ T+ L+ LL+EV ++ + I V+ Sbjct: 750 QLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQLSPTHTI---VVRGAVPC 806 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S V D+ RL Q F+ +LSNA+ +S TV + + + V+++G IP + C + Sbjct: 807 SLVGDKDRLWQAFTNLLSNAIKYSPDAETVEMDLSASAEIVMIRVRDHGLGIPREQCDKI 866 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF + QR G+G+GL IV + HGG + + S+ +T +P++ Sbjct: 867 FDRFYRVSGPRQRAIPGLGMGLYIVAEIVKAHGGTIMVDSAVGKGSTFTVTLPTR 921 >gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074] gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1827 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1341 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1400 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1401 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1460 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ VI AA D D I Sbjct: 1461 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEA 1520 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I + +F F R+ G GLGLSI Sbjct: 1521 GSLADADADLIAFSVTDTGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1580 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1581 LLGGEIHAASEPGRGSTFTLYLP 1603 >gi|170761017|ref|YP_001788882.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169408006|gb|ACA56417.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 469 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E++ + + + F+ +VS+E+RSP+T+I GF + + N Q+ Y++ Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPEEN--QNYYLKLTYEEIQR 296 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+ND+LDL+ ++ G +KL+ I LN+++ TK+ + +++ V + D K+ Sbjct: 297 LTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVDVSLEDDKV- 355 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 VAD+ RL Q+ +L NA+ ++++G V L I S+ N+G I ++ K + Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++RF ++ R + GLGLSIV S + HG + +++S EG T N I Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466 >gi|162452466|ref|YP_001614833.1| hypothetical protein sce4190 [Sorangium cellulosum 'So ce 56'] gi|161163048|emb|CAN94353.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 1360 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 143/280 (51%), Gaps = 14/280 (5%) Query: 523 DSVLEYSII---PLPNA-QTMLTFVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVS 577 D V+E+ ++ PL +A + ++ + + SV A++ E+ +A+R+ DE F+ +S Sbjct: 931 DGVVEWDLVTRLPLIDAARHIVGIIGIFRSVTAQKRSEEQIKDAVRRRDE----FLAMLS 986 Query: 578 YELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +ELR+PL I+ T LLK S + + V+ + S + L++D+L+ + V Sbjct: 987 HELRNPLGAIVHATALLKEDCSASDGASGIDEKVVQILERQSAQMARLLDDLLEASRVTQ 1046 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 ++L + L ++ + ++ M + V+ D + D RL Q+ +L Sbjct: 1047 NKIELRKRVLDLGSVVKDAADAVKNLMDTRGVDFSVVVDPEPIWVEGDPARLQQVHVNLL 1106 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 +NA ++S+G V L+A R +G + VK++G IP++M +VF FV ++ R G Sbjct: 1107 NNAAKYTSRGGHVTLEAKRLDGHAVVRVKDDGVGIPKEMLDTVFELFVQSSRTLDRSAGG 1166 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSKE 792 +G+GL++V + HGG VS S EG R+P E Sbjct: 1167 LGVGLTLVRGLVEKHGGTVSARSEGEGKGCEFEVRLPISE 1206 >gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 953 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 443 AICVLIDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 502 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L + V ++ SS +LL +++DILD + +++ +K+ +++ + + Sbjct: 503 ---GLPQGVDRLVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGN 559 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + SF D RL Q+ S IL+NA+ F+ G V+ R Sbjct: 560 YLPLVVKKRLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTGCIVL--NVRTC 617 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 G+++ F V++ G IPE +F+ F QR +G GLGL+I E INL G + Sbjct: 618 GNYLEFQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIE 677 Query: 774 ISSSDEGVTTINCRIP 789 + S ++ RIP Sbjct: 678 VESEPGLGSSFTVRIP 693 >gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1560 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 15/258 (5%) Query: 532 PLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PL + Q L +V ++T+ R ++ L + E + AD K+ F+ VS+ELR+PL Sbjct: 1146 PLLDRQGKLMYVLTSDIDITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNA 1205 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +IGF++LL+ + + ++Q +Y+ IS + LLNL+ D+LDL+ ++A + L + Sbjct: 1206 VIGFSELLQGGDVAA--AEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTD 1263 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L+ EV K E ++++ V D RL Q+ ++ NA+ F+S GS Sbjct: 1264 AGQLVQEVVAVFRLKAMEKDLKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSAGS 1323 Query: 707 TVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQR--RGVGLGL 758 + + G I V + G I + K +F+ FV + RG G GLGL Sbjct: 1324 VSVRAVFQPDPGGETGMLIIRVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGL 1383 Query: 759 SIVESFINLHGGHVSISS 776 +I + +N GG + + S Sbjct: 1384 AISQRLVNRMGGEIRLES 1401 >gi|228952378|ref|ZP_04114464.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069549|ref|ZP_04202838.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185] gi|229079180|ref|ZP_04211728.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2] gi|229190105|ref|ZP_04317109.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876] gi|228593328|gb|EEK51143.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876] gi|228704106|gb|EEL56544.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2] gi|228713688|gb|EEL65574.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185] gi|228807295|gb|EEM53828.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 443 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S + ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHEKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LHGG +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442 >gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] Length = 808 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G L +L + L + + +VT+ +R L E Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYESSDESL-MIET 555 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S+SS TT +P Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659 >gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 956 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL S L +Q ++ I SS Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLNTIRKSS 337 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 ILL ++NDILD + ++AG + L+ L D++ EV +A H N+ + ++ + Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDV 397 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729 + + D R+ Q+ + +++NA+ F+ G V+L+A+ ++ D S+ ++G Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEDEDTEHNRVTLRLSITDSGVG 456 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +S+FN F R+ G GLGL+I + + GG + + S Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505 >gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 614 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 132/263 (50%), Gaps = 10/263 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + L ++ D +R A + E +A K+ F +S+E+R+PL +IIG+T L Sbjct: 196 GGRMFLERLHALDQIRVSEAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIGYTSL 255 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + + L+ + + + + + LL +VNDILD + ++AG +K S++ L L+ Sbjct: 256 VLARQ--GLSREDTNDLSIVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTLPPLIEG 313 Query: 654 VKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708 + E + I+ D L +F AD RL Q+ +++NA+ F+S+GS V Sbjct: 314 CVALFFAEGREKGLVIRSEIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFTSEGSVVVGA 373 Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFIN 766 IL ++ + F V++ G I D+ ++F RF + R +R G GLGL+I S + Sbjct: 374 KILDREENSANVRFFVRDTGPGIRADLIPNLFQRFSQLDNGRDRRGGSGLGLAICRSIVQ 433 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 +GG + I S + +T +P Sbjct: 434 ANGGKIDIESHEGEGSTFWFEVP 456 >gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 781 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 144/271 (53%), Gaps = 21/271 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439 Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+GF+ L+ + N++ + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 440 IVGFSRLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550 Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760 + KG R+ ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637 >gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 864 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A KA+ K+ F+ +S+ELR+PL I+G+ L+ S SL+S ++ I+ S L Sbjct: 399 AAEKANHAKSEFLASMSHELRTPLNAILGYVQLMLRST--SLSSDHRNNLQTINDSGEHL 456 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L L+ND+L+++ ++AG + L + L LL+E++ + K + + I D + + Sbjct: 457 LGLINDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKATIKQLSLSFIRDCTVPQY 516 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D ++L Q+ I+ NA+ F+ KG V +K + F+V++ G I ++ + +F Sbjct: 517 IRTDEKKLRQVLINIIGNAIKFTEKGR-VTVKVWCEGHRLFFAVEDTGQGIEKEELEQLF 575 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 + FV + A G GLGL I FINL GG + ++S EG T Sbjct: 576 SPFVQAKAGVNSGEGTGLGLPISSKFINLMGGKIMVNSVVTEGTT 620 >gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] Length = 931 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT LN+ Q Y+ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L D L+EV + +A HE + + + D ++ Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ G+ +V LK+ DN + F V++ G I E Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG VS++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501 >gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli H736] Length = 708 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 198 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 257 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 258 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 314 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 315 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 372 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 373 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 432 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 433 VDSEPGMGSQFTVRIP 448 >gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 524 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 11/225 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL +IG D L S+ G L Q++ V+ I S T L LV+DIL Sbjct: 151 KSDFLANMSHEIRTPLNGVIGIVDAL--SRTG-LEPAQAEMVDLIRDSGTTLERLVSDIL 207 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D++ ++AG + L L D L + K + + V I+ G+F+ D RL Sbjct: 208 DVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEVSGTFLGDSTRL 267 Query: 688 LQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+ + +LSNA+ F+++GS V + + A D ++++ G E+ +F RF Sbjct: 268 KQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDEEQAALLFGRFN 327 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 RR G GLGLSI S + L GG + +SS+ GV + C Sbjct: 328 QADSTITRRFGGTGLGLSICRSLMQLMGGEID-ASSEPGVGSRFC 371 >gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 899 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 1/208 (0%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D K F+ VS+ELRSPLT I G+ DLL +G L+ Q +E + ++ N+V Sbjct: 656 DRAKTDFIATVSHELRSPLTVIYGYVDLLLRGLVGELSGDQYDLLEAVRNRVELMNNIVK 715 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +++ +A+++A ++ + + + L++E + + + V + L ADR+ Sbjct: 716 NVILVASIEANTLQTDLAPQDVRRLIDETIAPMRKAFERKGLTLTVNTPDDLPPVRADRE 775 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744 +L+ I +++ NA ++ +G I RD+G V + G IP D +F RF Sbjct: 776 QLMIILGQVIDNARRYTPQGEVAITAHRRDDGMVQIDVADTGPGIPADQMPRLFTRFFRV 835 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHV 772 + RG GLGL I + HGG V Sbjct: 836 EGNNSPERGSGLGLVITRQLVERHGGKV 863 >gi|283850533|ref|ZP_06367821.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574104|gb|EFC22076.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 712 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +VT+ +AE AL E A +K+ F+ ++S+E+R+PL I+G LL ++ Sbjct: 296 FRDVTERKQAEEALQAAKEQAEAATRVKSEFLANMSHEIRTPLNGILGILQLLGHTR--- 352 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+++Q +Y+ SS L L++DILDL+ ++AG + L + D Sbjct: 353 LDAEQREYLLAAIQSSHRLTRLLSDILDLSRIEAGKLALREDAFEIADQREATLGLFGMT 412 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 E + + DG++ V D+ RL Q+ ++ NA+ F+ KG + + + Sbjct: 413 AREKGLELDFRIDGRMPPRLVGDKSRLQQVLFNLVGNAIKFTEKGRVRVEVEPIGWCKGV 472 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 +F + + G I + M ++VF F R +G GLGLSIV + + GG ++I Sbjct: 473 LRVLFVISDTGIGIDDAMLQAVFEPFTQAEVSYTRSFQGAGLGLSIVRKLVGIMGGELTI 532 Query: 775 SSSDEGVTTINCRIP 789 S+ TT+ C +P Sbjct: 533 DSTTGAGTTVYCSLP 547 >gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1186 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 15/270 (5%) Query: 532 PLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 P+ N + + +V ++T +E L E A++ K+ F+ ++S+E+R+P+ Sbjct: 764 PILNEEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFLANMSHEIRTPING 823 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+G LL+ + SL+ +Q Q VE AS+ L L+ DILDL+ ++AG M++ + Sbjct: 824 IMGGLQLLEAT---SLDHEQKQLVEMGIASARRLTRLLTDILDLSRIEAGKMEIRKADFE 880 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG 705 ++ L ++ A E N+RI D +L +A D R+ QI ++ NA+ F+ Sbjct: 881 VDRLCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQILLNLVGNALKFTHDD 940 Query: 706 STV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759 + +L+ + + SV ++G I ++ +FN FV A G GLGLS Sbjct: 941 TVELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQADGAFTRNFEGAGLGLS 1000 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 IV + + GG++S+ S+ +T +P Sbjct: 1001 IVVRLVQMMGGNISVESTPGEGSTFYVSLP 1030 >gi|89893070|ref|YP_516557.1| hypothetical protein DSY0324 [Desulfitobacterium hafniense Y51] gi|89332518|dbj|BAE82113.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 485 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 130/242 (53%), Gaps = 11/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT+ N L +E+K++F+ +S+EL++PL++II FTD+ + S +Q + V+ I Sbjct: 243 LTQANLELHDENEMKSNFLTIMSHELKTPLSSIIAFTDIWEKSSREKSEDEQ-RLVQEIK 301 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKV 671 +S LLN+VN+ +D+A ++AG ++ Y + L D+++ V IA K H ++ ++ Sbjct: 302 ENSRTLLNMVNNTIDVARLEAGRFEITYDEVELVDIVSAVVSVAHPIAVK-HNISLEKRI 360 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729 D + ++D + L +I ++SNA+ F+ G V + + D + V + G+ Sbjct: 361 SPDTPI--IISDWEALRKILMNLVSNALKFTGAGGKVDISVSYLSDRSRVVIQVADTGAG 418 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE +F RF + G R G GLGL +V++ GG + + S E ++ + Sbjct: 419 IPEKDHDQIFERFTQSTQPGDERINGSGLGLFLVKTLTEKLGGEIEVDSVVERGSSFSVY 478 Query: 788 IP 789 +P Sbjct: 479 VP 480 >gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 749 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T E +R AD +K++F+ VS+ELR+PLT+IIG+T++L+ G L + + + ++ Sbjct: 498 TRLYEEVRTADRLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLGERMGEPLGHMRT 557 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +S LL L+ DILD + ++AG +K++ + + + V ++ + ++ + + Sbjct: 558 ASGTLLRLITDILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPD 617 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734 L A+ RL Q+ + ++ NA+ F+ +G + +A + D + SV++ G I + Sbjct: 618 HLPYIYANSMRLEQVLTNLIGNAIKFTDQGGITV--SAHHHADRLRISVRDTGIGIAHEH 675 Query: 735 CKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 ++F F G+ G GLGL+I + L GG + + S+ EG T Sbjct: 676 QDAIFLEFRRIEQIGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGST 725 >gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1039 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 15/254 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF +V + R E L E A+ K+ F+ ++S+E+R+PL I G +L + Sbjct: 631 TFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADA--- 687 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL +Q + E S L +L+ D+LD++ +DAG +++ L+ + +V++ Sbjct: 688 SLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714 + + + V D + S V D RL Q+ + +L NA F+ KGS V L+A Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806 Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770 ++ +FSV++ G IP++ +F F + A G +R G GLGLSI I + GG Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPF-TQACEGFKRSHQGAGLGLSICRRIIRVMGG 865 Query: 771 HVSISSSDEGVTTI 784 H++ S TT+ Sbjct: 866 HLAFESEAGTGTTV 879 >gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1093 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 19/263 (7%) Query: 528 YSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 YS +P+ + + V++T+ E+AL EA A+ K+ F+ +S+E+R+P+ Sbjct: 676 YSAVPIQVYGESGILAVLVDITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPM 735 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G +L S L K ++ + I A+ LL L+NDILDL+ ++AG + + Sbjct: 736 NTILGMAGVLAAS---DLPPKHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKA 792 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSS 703 + L ++ + + +++ G L + ++ R+ Q+ +L NA+ F+ Sbjct: 793 CDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTD 852 Query: 704 KGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGV 754 +G V+ D+ D +V++ G IP D +F+RF ++ H G GV Sbjct: 853 QGEIVLELGREDHADTGAWLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYG---GV 909 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL+I +++ GG + + S+ Sbjct: 910 GLGLAICNKLVHMMGGSIRVDST 932 >gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides fragilis 638R] Length = 411 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 132/248 (53%), Gaps = 20/248 (8%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q +LT ++T+ +R L + E A+++K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + ++++ Y++ ++ ++ LL +V D+LDL+ +++G + +YS +NDLL + Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHG 276 Query: 657 SIATKMHENNIRIKVISDGKLGS--------FVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + NIR+K + KL +++ R++QI + ++ NAM F+ G Sbjct: 277 IL-------NIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEIC 329 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 + + F V + G IP +F+RF H + G GLGL++ ++ + Sbjct: 330 FGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNL 387 Query: 769 GGHVSISS 776 GG + + S Sbjct: 388 GGEMGVES 395 >gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1039 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 15/254 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF +V + R E L E A+ K+ F+ ++S+E+R+PL I G +L + Sbjct: 631 TFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADA--- 687 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL +Q + E S L +L+ D+LD++ +DAG +++ L+ + +V++ Sbjct: 688 SLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714 + + + V D + S V D RL Q+ + +L NA F+ KGS V L+A Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806 Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770 ++ +FSV++ G IP++ +F F + A G +R G GLGLSI I + GG Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPF-TQACEGFKRSHQGAGLGLSICRRIIRVMGG 865 Query: 771 HVSISSSDEGVTTI 784 H++ S TT+ Sbjct: 866 HLAFESEAGTGTTV 879 >gi|89902539|ref|YP_525010.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gi|89347276|gb|ABD71479.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 920 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%) Query: 546 TDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +DS+ RA L + NE L+ D +K+ F+ V++ELR+PLT+I +LL+ +L + Sbjct: 658 SDSLERATAELRQANEQLKSLDRLKDDFMSSVTHELRTPLTSIRALAELLRDDPRIAL-A 716 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ Q++E I + + L LVN +LD+A +++G + + + + + L+++ + A E Sbjct: 717 QRRQFIEIIVSETERLSRLVNQVLDMAKIESGHAEWHTAEVDMRALVSQAVSTTAELFRE 776 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSV 723 I ++V ++ + +AD RL+Q+ +LSNA F G V + + D+ +V Sbjct: 777 RQIAVEVALPEQVPTLMADPDRLMQVMLNLLSNAAKFVPLPGGRVRVSLSSDDSGVTVAV 836 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777 +NG + + +F+RF R +G GLGL I + GG + + S Sbjct: 837 SDNGPGVAAEQQALIFDRFRQGGDAANRPQGTGLGLPISRQIVEHFGGRLWLESG 891 >gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 997 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 167/371 (45%), Gaps = 53/371 (14%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWK---------TEENRLSP----------GTHI 480 +D E + +F DGR+ +N A L T++ L+P G + Sbjct: 360 VDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNSTLTIPNHDGDNA 419 Query: 481 RNIA-ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 N + T + +DG DL + F E +Q TL L D Sbjct: 420 ENPSHVTFETRLHTADGQDLEVEVWAGFL-EIDYVQHTLWLARD---------------- 462 Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +TD R E + + KA + K+ F+ +S+E+R+P+ I+G +LL ++L Sbjct: 463 -----ITDRKRLEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL 517 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ QS+YV +++ LL ++NDILD++ +AG ++L + +++ ++ + +A Sbjct: 518 ---DADQSRYVRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLA 574 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K E + + V S+ S + D RL Q+ +L NA+ F+ G+ +L + D Sbjct: 575 YKCKEKGLYLLVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIAD 634 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F V + G I + + VF F R G GLGLSI +S I+ GG + Sbjct: 635 KQVQLAFHVVDTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKI 694 Query: 773 SI-SSSDEGVT 782 ++ S +D G T Sbjct: 695 TVHSRADHGST 705 >gi|301164109|emb|CBW23665.1| putative two-component regulator sensor kinase [Bacteroides fragilis 638R] Length = 756 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +T +N+ D + E+ L E + KA E+K SF+ ++S+E+R+PL I+GF+ Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554 Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL + + ++ QY++ I+ +S +LL L+NDIL+L+ +++G M + L+ L+ Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614 Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 + Q+ I ++H ++ +G+ G V D+ RL+Q+ + L+NA F+ +GS Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP+ K +F RF Q G GLGLSI + I Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKIIFGRFYKQNEFAQ--GTGLGLSICKLII 726 Query: 766 NLHGGHVSISS 776 G +S+ S Sbjct: 727 EKLQGRLSLRS 737 >gi|307152684|ref|YP_003888068.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982912|gb|ADN14793.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 584 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 8/261 (3%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADE---IKNSFVQHVSYELR 581 EY + + AQ++ + ER L ++ EA ++A++ IK+ FV +S+ELR Sbjct: 168 EYDLQLIEVAQSLTAIAIERQKMDEERNQLLLKEREARQEAEQLNRIKDEFVMMLSHELR 227 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I+G++ LLK + NS Q + +E I ++ + L++D+LD+ + KL Sbjct: 228 TPLTAILGWSQLLKKRLIHEQNSCQ-KAIETIERNAKLESQLIDDLLDITKILTDKFKLK 286 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + L L+ S+ I I ++ + + D +RL QIF ++SN++ F Sbjct: 287 KDIVYLESLIKLTVDSLLLTAEAKEIPINIMIESPKLKVLGDERRLQQIFWNLVSNSIKF 346 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 + G + +K R+ ++ + G I + VF+RF QR G+G+GLS Sbjct: 347 TEAGGLITIKLQREQEQAKITITDTGIGIKPALLPFVFDRFWQADSSSQRMAGGLGIGLS 406 Query: 760 IVESFINLHGGHVSISSSDEG 780 IV + LH G V S EG Sbjct: 407 IVHRLVELHQGQVIAESLGEG 427 >gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 931 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT +++ Q Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----MSNSQMDYLQTIEKSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 N++NDILD + ++AG + L + L EV AT HE ++ I + D K+ Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLKIDPKIPQGL 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G+ I R D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] Length = 1161 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++VT+ V E A E+ EA +A + K++F+ +S+E+R+P+ +IG T+LL+ + Sbjct: 630 SLIDVTEGVEKEIAQRER-EAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRETP-- 686 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ +Q+ YV I S L++L+NDILD + +++G +++ ++ L L++E A Sbjct: 687 -LDLQQTGYVNTIHNSGMALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQ 745 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + N+ + V D ++ ++D R+ QI LSNA F+ GS I + +G Sbjct: 746 QSISKNLGLYVDIDPQINDRIISDPARIRQILLNFLSNAFKFTETGSVRIRADSLADGRI 805 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISS 776 V++ G + ++ + +F F R+ G GLGL+I + L GG V IS Sbjct: 806 RIGVRDTGIGLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISE 865 Query: 777 SDEG 780 S +G Sbjct: 866 SGKG 869 >gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group] Length = 653 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K SF+ ++S+E+R+PL IIGFT+LL + L+ +Q +++ + + LL +VNDIL Sbjct: 177 KESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDVQTAGENLLLIVNDIL 233 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ +++G + L L L V + K + + + D +L + D+ RL Sbjct: 234 DLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKT-ADGVEFNLYLDAELPDVITGDQGRL 292 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741 QI + NA+ F+++G I + ++ G+ FSVK+ G IP++ +S+F R Sbjct: 293 NQIMVNLAGNALKFTNEGEVTI--SVKNKGETEDSYTIRFSVKDTGIGIPKEHLESIFER 350 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F R+ G GLGLSIV+ + LH + + S + Sbjct: 351 FTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSRE 389 >gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 932 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 17/279 (6%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRK 564 SFDDE L+ +E +++ + +F N + +AE + + K Sbjct: 281 SFDDEE------FRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ +IIG+ LLK S L+ KQ +YVE I ++ LL ++ Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNS---VLSPKQREYVENIGLAAKNLLAII 391 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 N ILD + ++AG M L ++D+LNE+ + + I +++ D + F+ D Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ ++SN + F+ +G I ++ +N FSV + G I ++ K +F Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R+ G GLGL+I + + L G +++ S Sbjct: 512 QAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVES 550 >gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] Length = 775 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T + Sbjct: 268 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-- 325 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 326 -LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLP 384 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R +GD+ Sbjct: 385 LVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRADGDY 442 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + V++ G IP +F+ F QR +G GLGL+I E I++ G +S+ S Sbjct: 443 LSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDS 502 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 503 EPGMGSQFTVRIP 515 >gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14] gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14] Length = 538 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 140/258 (54%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ V+ ++ L E E +++ +K++F+ ++S+E+R+PL IIGF+D++ + Sbjct: 287 LLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMI--CQ 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G KQ +Y++ +S+++ +LL L++DILDL+ ++AG M+ + +NDL+ + + + Sbjct: 345 TGEEEEKQ-EYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQM 403 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K ++ I + DR RL Q+ +NAM F+ KGS + + A+D Sbjct: 404 QEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKD 463 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N +G GLGL+I + GG + Sbjct: 464 --EIYFYVKDTGIGIPADKINEVFERFVKLNTF---AKGTGLGLAICRVIVERLGGTIGA 518 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + R+P E Sbjct: 519 DSKEGKGSCFWFRLPIHE 536 >gi|304315711|ref|YP_003850856.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777213|gb|ADL67772.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 473 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 L + D + FV +VS+ELRSPL+ I G+ D + G++ ++S+ Y+E + + Sbjct: 241 LGRMDNARREFVANVSHELRSPLSTIQGYIDGVVD---GTIPMEKSKFYLEIAQKETRRM 297 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L++++LD+ +++G LN +N+L+ + +++++ ++ +KV D Sbjct: 298 SRLISELLDITKMESGAFPLNLVEFDINELIRLTIIKMESRINKKDLMVKVDFDSDKDIV 357 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD+ ++ Q+ + ++ NA+ FS+ G + + + V N G +IP D +++ Sbjct: 358 EADKDKIEQVLTNLIDNAIKFSNPGGYIHIVTEKSKDKLFIKVHNKGKTIPPDEIDHIWD 417 Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF + R GVGLGL IV S INLH + ++SSDE TT + K+ Sbjct: 418 RFYKVDKSRSGSPGVGLGLYIVRSIINLHNEDIWVTSSDEEGTTFTFTLKLKK 470 >gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 837 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 130/250 (52%), Gaps = 11/250 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++D RAE + + A+ K+ F+ ++S+E+R+PL ++G LL+ +KL Sbjct: 426 MDLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLTKL--- 482 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q Y + S L+ L+ DILDL+ ++AG + + + + L+++L + + Sbjct: 483 DPVQEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGDLFSPTA 542 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718 E ++++ D + S + D RL Q+ S ++ N++ F+ G + L + G Sbjct: 543 REKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGGVTVDASLLPSVHGGQ 602 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +FSV + G IP+D ++F F V+ +G GLGLSI + ++ GG++S+ Sbjct: 603 CRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSFMGGNISV 662 Query: 775 SSSDEGVTTI 784 S E TT+ Sbjct: 663 VSELEVGTTM 672 >gi|86742728|ref|YP_483128.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3] gi|86569590|gb|ABD13399.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3] Length = 1406 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 16/253 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EK E L + + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ + E I Sbjct: 866 GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETI 925 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ + LL L+NDILDL+ V+AG M ++ +T+ L + V E + +V + Sbjct: 926 HSAGSELLELINDILDLSKVEAGKMNVDATTVRTAALCDAVAGVFGPVAEEKGLSFQVNL 985 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI----------- 720 + FV D QRL Q+ +LSNA+ F+ G+ + + AR + F+ Sbjct: 986 APDVPAEFVTDEQRLQQVLKNLLSNAVKFTDTGTVRLDVTVARPDLPFLSPSLCSAGTVL 1045 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F+V + G + + + +F F RR G GLGLSI + L GG +++SS Sbjct: 1046 SFAVTDTGIGVAVEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGAIAVSSV 1105 Query: 778 DEGVTTINCRIPS 790 +T +PS Sbjct: 1106 VGRGSTFTLYLPS 1118 >gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 554 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 91 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 149 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 150 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 188 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 189 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 244 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 245 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 303 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 304 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 363 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 364 GLGLALSKSMLEMMHGTLSVQNT 386 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 6/219 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ H+S+ELR+PL I+G+ +L+ K +L +Q+ + I S LL ++ Sbjct: 478 ANQAKSDFLAHMSHELRTPLNGILGYAQILRRDK--NLEQRQADGIAVIQRSGEHLLAII 535 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 NDILD+A ++AG + L S ++L + + +I K E + ++ G + D Sbjct: 536 NDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAAVRVD 595 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 +RL Q+ +LSNA+ F+ GS + F V++ G I E +++F F Sbjct: 596 EKRLRQVLLNLLSNAIKFTETGSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRETIFRPFE 655 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VS+A R + G GLGL+I + L GG + + S G Sbjct: 656 QVSDA-RHRVGGTGLGLAISRQLVRLMGGEIHVESRRGG 693 >gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] Length = 1303 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 15/242 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L KQ ++ Sbjct: 857 QARRTLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLVLAKLLSENPEGNLTPKQVEF 916 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S T LL L+NDILDL+ V+AG M+++ + L++ V + + + Sbjct: 917 AKTIHDSGTDLLQLINDILDLSKVEAGKMEVHPQPLAFTKLVDYVDATFRPLAVDKGLDF 976 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720 V +S D QRL Q+ +LSNA+ F+S+G + A + +F Sbjct: 977 AVEVSPQVPEVLFTDEQRLQQVLRNLLSNAVKFTSEGRVRLTIAPAEGVEFTAPALREAP 1036 Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V + G I ED + +F F RR G GLGLSI + +L GG + Sbjct: 1037 LVIGFEVSDTGIGISEDKLQVIFEAFQQADGTTSRRYGGTGLGLSISRNIAHLLGGEIHA 1096 Query: 775 SS 776 S Sbjct: 1097 QS 1098 >gi|227872061|ref|ZP_03990438.1| sensor histidine kinase [Oribacterium sinus F0268] gi|227842092|gb|EEJ52345.1| sensor histidine kinase [Oribacterium sinus F0268] Length = 411 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 137/253 (54%), Gaps = 5/253 (1%) Query: 542 FVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++ +S+R E L+ E R+ ++ K + +++++LR+PLT+I+G+ DLL+ S++ Sbjct: 106 LAHIAESIRLMEEELSSHIERERENEQSKTDLITNIAHDLRTPLTSILGYLDLLRNSQMV 165 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 K+ Y+E + + L L+ ++ + G + +N ST+ L LL+++ + Sbjct: 166 PEEMKK-HYIEIVYNKALRLQKLIEELFGFTKLSYGKLNMNISTLDLVQLLSQLVEESYP 224 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 +NN+ ++ K D L ++F ++SNA+ + ++G V+++ ++ + + Sbjct: 225 NFEKNNLSYDFSANVKSLFIEGDGDLLARLFDNLISNAIKYGAEGKRVLIRLRKEKEEVM 284 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V N G IPE +F++F V ++ G GLGL+IV++ +++H G++++ SD Sbjct: 285 VQVLNFGYVIPEKELPLIFDKFYRVEHSRSLSTGGTGLGLAIVKNIVDMHHGNITV-QSD 343 Query: 779 EGVTTINCRIPSK 791 G T N +P K Sbjct: 344 MGGTRFNVTLPLK 356 >gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061] gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061] Length = 593 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 38/358 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N ++ G + + + Sbjct: 262 MADGVITINIDGTILMTNPPAERFLQAWYYEQNMKIKDGDEL------------PPEARE 309 Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 LF +++ ++ +LQG +L S PL N Q +V +V R +T Sbjct: 310 LFHTAVSTEKEQMIEVTLQGRTWVLLMS-------PLYNQQ------DVRGAVAVLRDMT 356 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ R+ D+++ F+ +VS+ELR+P+ + G+++ + GS K+ + + I Sbjct: 357 EE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAGSEEEKK-EIAQIIYDE 411 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S + LVND+LDLA ++AG + LN + +L ++ + E + + Sbjct: 412 SLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVD 471 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 FV D ++ Q+F+ ++ NA+ + +G V VK++GS IPE+ Sbjct: 472 EPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLP 531 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF A R G GLGL+IV++ + H G + S T IP K+ Sbjct: 532 FIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589 >gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 733 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 7/239 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQYVEYISASS 617 A A+ K+ F+ ++S+EL +PLT IIG + L+ S KQ Y++ I + Sbjct: 359 AAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAASNFLPPDKQKHYLQVIQDNG 418 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDG 675 LL L+ND+L+ + V AG L+ L L N V + I T+ + E N+ +++ Sbjct: 419 NKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAEIKEINLILEMKITE 478 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K F AD R+ QI +L NA+ F+ + + L+ ++ IF V++ G IP Sbjct: 479 KEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRLWKEGSQVIFQVEDTGIGIPAQKI 538 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F +F +RR G+GLGL++ + + LH G + + S + + R+P ++ Sbjct: 539 PLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTIEVESCLDKGSIFTVRLPQQK 597 >gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 969 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 134/241 (55%), Gaps = 17/241 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E L + + KA++ K+ F+ ++S+E+R+PL IIGFT+LLK +K L+ KQ +Y Sbjct: 444 KYEEELIKAKQEAEKANQAKSIFLANMSHEIRTPLNGIIGFTNLLKETK---LDEKQEKY 500 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENN 666 V I SS +LL ++NDILDLA +++G +L + +L E++ S+ K E N Sbjct: 501 VSIILKSSELLLEIINDILDLAKIESGKYQLEP---LETNLKMELQSSLLLYEAKAKEKN 557 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARD--NGDFI 720 + ++ D ++ + D RL Q+ +++NA+ F+ G +V + K + D + + Sbjct: 558 VEYEIRIDKEISDCLILDSVRLQQVMFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIR 617 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV + G IP++ + +F F + ++ G GLGL+I +++ G + + S + Sbjct: 618 FSVIDTGIGIPKEKLEKIFEPFEQASVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEE 677 Query: 779 E 779 E Sbjct: 678 E 678 >gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 929 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT LN+ Q Y+ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L D L+EV + +A HE + + + D ++ Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA+ F+ G+ +V LK+ DN + F V++ G I E Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG VS++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501 >gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 683 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 12/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++TD ER L + +A K F+ +S+E+R+P+ IIG ++LL + L Sbjct: 127 TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 186 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Y + +SS LL L+N ILD ++AG + L L LL+ + +++ Sbjct: 187 PLY---QEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSV 243 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + I+V D ++ + + D +L Q+ + +L NA+ F+ +G+ V L R +GD Sbjct: 244 KAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDA 302 Query: 719 ---FI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772 F+ F V + G IP+D +F F ++ + G GLGL+I + + LHG + Sbjct: 303 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 362 Query: 773 SISS 776 + S Sbjct: 363 RVES 366 >gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] Length = 897 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+E K++F+ ++S+E+R+P+ I+G T L + L ++Q +Y+ + +S+ LL+ Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + +++G M+++ + + + + + E I + V IS + Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL QI + +L NA+ F+ +G ++ + A D + F +++ G I + K++F Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++L GG + + S Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476 >gi|209966096|ref|YP_002299011.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959562|gb|ACJ00199.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 744 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 116/228 (50%), Gaps = 4/228 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNL 623 A+ K F+ +S+ELR+PL I+GF+++++ G ++ Q Y ++ S++ LL++ Sbjct: 496 ANRAKTQFLATMSHELRTPLNAILGFSEIIRDGTFGQVSPGIYQEYAGHVFDSASHLLDI 555 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+LDLA V++ + L + L + + Q++ + I V G + +AD Sbjct: 556 INDVLDLAKVESATVTLTPEPVPLEETVRRAVQTVRPIARDRRISFAV-QGGPAVTVLAD 614 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R+ LLQ ILSNA+ S + TV ++ ++G ++++ G P D+ + + Sbjct: 615 RRALLQSLYNILSNALRHSPENGTVEVRLEPEDGFGALTIRDFGPGFPPDVLAELGQPYP 674 Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N + R GLG +I + + GG + ++ +G + R+P Sbjct: 675 GRRNVYVSAARSTGLGYAITAALLGAMGGEIEACNAPDGGACVTFRLP 722 >gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1161 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 26/262 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ A++ K E L + + K+ F+ ++S+ELR+PL +I+ +LK ++ +LN Q +Y Sbjct: 470 QAKEAMSLKAEELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENLNEDQIKY 529 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----N 665 I + T LL L+NDILDL+ +++G KL+ S + L L+ +KQ + +E Sbjct: 530 AGVIHNAGTDLLTLINDILDLSKIESG--KLDLSILPLKPLV--IKQDMEALFNELAKSK 585 Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--- 721 I + D +L + + D+ RL QI +LSNA F+ + + + ++ + +F Sbjct: 586 KISFHTVLDKELPATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSR 645 Query: 722 ------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 SVK++G IP D K +F F R+ G GLGLSI + ++ Sbjct: 646 QLKTTTEDIIAISVKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHI 705 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + ++S +T +P Sbjct: 706 LGGEIQVNSKQGEGSTFTLYLP 727 >gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 918 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E +R+ + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNG--DFIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R ++G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 752 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 3/240 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVE 611 R E+ KA + K+ F+ ++S+ELR+PL I GF+++L G L ++ Y E Sbjct: 500 RKYAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAE 559 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S LL+++NDILD+A ++AG M ++ I + ++ + I + + +I + + Sbjct: 560 DILSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNL 619 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + D + + Q+ ++SNA+ F+ G + + ++N SV +NG IP Sbjct: 620 TVKDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISVVKENAFVRVSVADNGIGIP 679 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + F ++ R +G GLGLS+ +SF +HGG + I S TT++ +P Sbjct: 680 KQDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739 >gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 730 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 329 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 388 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ L+ + + + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 389 IVGFSRLM---TMADNAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 445 Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F+ Sbjct: 446 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 500 Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 KG R ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 501 FKGEIRFGFEVRK--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 556 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 557 RVIVEKLGGEITAESKLNEGSTFRFTIPYK 586 >gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1838 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +AL EK L + K+ F+ ++S+ELR+PL +++ + L+ + +L+ +Q Y Sbjct: 1113 ARQALEEKAAQLALTSKYKSEFLANMSHELRTPLNSLLLLANQLRDNPERNLSEQQVAYA 1172 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I AS LLNL+NDILDL+ +++G + + + + L + V+ + + + Sbjct: 1173 RTIFASGNDLLNLINDILDLSKIESGTVTADTADVPLRAVRESVESTFTHMAADKGVAFA 1232 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------------KAARDN 716 + D +L GS V+D +RLLQI +LSNA F+ +G + +R Sbjct: 1233 LDFDARLPGSLVSDEKRLLQILKNLLSNAFKFTERGEVRLTVTPATSGWSSDHPALSRAP 1292 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 G F V + G I D + +F F R+ G GLGL+I + GG +++ Sbjct: 1293 GVIAFRVSDTGIGIAPDKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITL 1352 Query: 775 SSSDEGVTTINCRIPS 790 S+ +T +P+ Sbjct: 1353 QSTPGTGSTFTLYLPT 1368 >gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1719 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 20/231 (8%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D +K+ F+ VS+ELR+PLT I G +L++ L ++ ++ +S L L Sbjct: 1468 KLDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPLTANRMLKVALNNSERLARL 1527 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILDL +++G +L ++DL+ + +S+ + +IRI + AD Sbjct: 1528 VNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTAVE--AQVWAD 1585 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----------------IFSVKNNG 727 ++Q +L N + FS GS + LKA R NG++ +FS+++ G Sbjct: 1586 FDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQG 1645 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP D +S+F RF V + Q+ G GLGL+I +S I H G + + S Sbjct: 1646 RGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVES 1696 >gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment'] Length = 1049 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 13/242 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ + A K F+ +S+E+R+PL IIG T+L + +L ++Q ++++ + Sbjct: 505 AMQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDT---ALTTEQREFLQVV 561 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +SS LL ++NDILDL+ ++AG M + + L +++ V + ++ + + + + Sbjct: 562 QSSSEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYV 621 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNN 726 D L S V D RL Q+ ++ NA+ F+ +G I ++A G I SV + Sbjct: 622 DPALPSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQVERTQVEAPGRIGVHI-SVADT 680 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP +F+ F RR G GLGLSI ++ + L GG + + S +T Sbjct: 681 GIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTF 740 Query: 785 NC 786 +C Sbjct: 741 HC 742 >gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 737 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTI 619 +A+ K+ F+ +S+ELR+PL IIG+TD+ L + L++ ++ V +S Sbjct: 356 EANLAKSEFLSLMSHELRTPLQAIIGYTDVVIEDLYVEGMDHLSTDLTRVVN----NSQR 411 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L+N +LDLA +++G M L + L+ L+NE ++ + E N+ ++ + + Sbjct: 412 LLRLINGVLDLAKIESGHMDLTLEHLELHSLVNEAIDNVKPQFDEKNLPLETDLESIPEA 471 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 + DR++LL I +LSNA F+ +G + A + N + I + ++ G I V Sbjct: 472 ALVDREKLLHIILNLLSNACKFTDRGRVTL--AVKHNANAITITCRDTGMGIDAAALPFV 529 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF V ++ Q G GLGL+I + F L GGH++++S T IP Sbjct: 530 FDRFQQVDSSATRQHSGSGLGLAITKQFCELMGGHITVNSEPGRGTHFKVEIP 582 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 8/252 (3%) Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +V ++ RA E + EAL + D K +F +VS+E R+PLT ++G + L Sbjct: 340 HVATAIANARAYDEERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSER 399 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 ++ + VE + T LL LVN +LD + ++AG M +++ L E+ + Sbjct: 400 AIRPENHHLVEVAYRNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRS 459 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + +R+++ SD +R+ +I +LSNA F+ +G I A RD GD + Sbjct: 460 ATDKAGLRLEIESDALPHRVYVNREMWEKIVLNLLSNAFKFTFEGGITI--ALRDGGDGV 517 Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV++ G IP + VF RF V A G G+GLS+V+ + HGG + + S Sbjct: 518 AVSVRDTGVGIPPNELPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESE 577 Query: 778 DEGVTTINCRIP 789 TT + +P Sbjct: 578 VGKGTTFHIHLP 589 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703 I LN +++ + ++ N+ ++ DG + VA R Q+FS +L N++D Sbjct: 981 IALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHAEAVAGEMR--QVFSNLLQNSLDAVD 1038 Query: 704 KGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 +G + ++ + R+ ++ ++G I + + +F F + +G G GLGL + Sbjct: 1039 EGGAIKVRISTIRNGSAVRVTIADSGKGIEANFRERIFEPFFTT--KGAV-GTGLGLWVT 1095 Query: 762 ESFINLHGGHV---SISSSDEGVTTINCRIP 789 + HGG + S++S D+ T+ + +P Sbjct: 1096 RQIVEKHGGRIRVHSLTSGDQRGTSFSIVLP 1126 >gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 1231 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD K+ F+ ++S+E+R+P+ ++G +LL SKL +++Q + + I S LL ++ Sbjct: 678 ADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKL---DTRQKTFTDIIVKSGNALLTII 734 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVAD 683 NDILD + ++AG MKL + + +V +++ E +I + V D + G + D Sbjct: 735 NDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGD 794 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGSSIPEDMCKSVF 739 R QI + I+ NA+ F+ G ++ +A+ + + IFS V+++G IP D +++F Sbjct: 795 AGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESIFSLRVEDSGIGIPVDKLETIF 854 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F RR G GLGL+I + L G +++ S + IP Sbjct: 855 DKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIP 906 >gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466] Length = 632 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 24/284 (8%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563 L L+LLS +V ++S P+ T+ L SV+ R + EA R Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234 Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ K+ F+ +S+E+R+P IIG LL +KL + +Q ++VE I SS Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ +++DILD + V+AG ++L T LL++V K + N+++ D KL + Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734 V D RL Q+ + +LSNA+ F+ +G +L + + + I F V ++G I ++ Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++VF RF R+ G GLGL+I +++ GG + ++S Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 >gi|83942502|ref|ZP_00954963.1| PAS [Sulfitobacter sp. EE-36] gi|83846595|gb|EAP84471.1| PAS [Sulfitobacter sp. EE-36] Length = 698 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 50/372 (13%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATCSRY----YN 492 I+ L++G +F R+ LSN ++ ++ L PGT + I ++ YN Sbjct: 316 IEALNDGFVMFDAQDRLLLSNSKYKEMYDLPSEVLKPGTPFAELLRIGVKSKQFPMGRYN 375 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 E + + AI E ++ + L V++ S PL + + V+VT+ Sbjct: 376 EEEWIERRLAI----HRENRTSETEQHLWGGRVIKASDRPLADGSYVGLRVDVTE----- 426 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-------------- 598 L+ +A A + K F+ +S+ELR+PLT I+G L + ++ Sbjct: 427 --LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYED 484 Query: 599 -----------LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 L + + S + + S LL+L+N+ILD+A +++G + + S + Sbjct: 485 GEISHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVAKIESGSLVIEPSPCAV 544 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D+++ V + + T + + V+ + + AD+ R QI ++ NA+ F+ G Sbjct: 545 QDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQILFNLIGNAIKFTDTGFV 602 Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 ++ + GD + F V ++G+ IPE +S+F F RR G G+GL+I S Sbjct: 603 RLV--VKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTATRRAGGTGMGLAISRSL 660 Query: 765 INLHGGHVSISS 776 + GG +S+SS Sbjct: 661 AEMQGGSLSVSS 672 >gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 342 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D+ + FV VS+ELR+PLT+I GF D L S ++ +++ I + L LV Sbjct: 100 DQAQTDFVSTVSHELRTPLTSIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVE 159 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DIL ++ + +G +K + L ++++ V +++A K +R ++ G L AD+ Sbjct: 160 DILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRREL--PGALPEVWADQD 217 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742 RL QI + ++ NA+ +S G+ V + A D D +V++ G IPE+ +FNRF Sbjct: 218 RLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQIFNRF 277 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + +R G GLGL I +S + GG + + S +T +P+ Sbjct: 278 SRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLPA 327 >gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 781 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ L+ + + + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 440 IVGFSRLM---TMADNAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 496 Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F+ Sbjct: 497 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 551 Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 KG R ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 552 FKGEIRFGFEVR--KEYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 607 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 608 RVIVEKLGGEITAESKLNEGSTFRFTIPYK 637 >gi|325663167|ref|ZP_08151617.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470621|gb|EGC73851.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium 4_1_37FAA] Length = 471 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+ ++ + F+ +VS++ RSPLT+I G+ + + + Q +Y+ I + L Sbjct: 239 LKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIP--QELQGKYLNIILFETERLT 296 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L D+L L D + L+ + L+D + S I I+++ D ++ + Sbjct: 297 DLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFDPRIQNVF 356 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 ADR ++ Q+ +L NA+ FS+ S+++L+ NG SVK++G IP+ V+ R Sbjct: 357 ADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKSLTKVWER 416 Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F S+ RG+ ++G GLGL+IV+ I HG ++++ S+ EGV T Sbjct: 417 FYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVIST-EGVGT 459 >gi|325273896|ref|ZP_08140066.1| histidine kinase [Pseudomonas sp. TJI-51] gi|324100973|gb|EGB98649.1| histidine kinase [Pseudomonas sp. TJI-51] Length = 282 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 2/234 (0%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E LR+A ++K+ F+ ++S+E R+PL +I+ T LL G L+++Q + V +IS ++ Sbjct: 38 QAEQLRQASDLKSRFLSYMSHEFRTPLGSILSITGLLTDELDGPLSAEQHRQVTFISTAT 97 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L ++V+D+LDLA ++AG + ++ + + DL ++ + + + L Sbjct: 98 RELSDMVDDLLDLAKIEAGRISISPAWFDMLDLFAALRGMFRPIVDATAVDLIFEEPTGL 157 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D ++L QI +SNA+ F+++G + + F+V++ G I ++ + Sbjct: 158 PRLYTDDKKLAQILRNFISNALKFTAQGEVRVSAQLYGDDRIRFAVRDTGIGIAAELLDT 217 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F V + + + RG GLGLS+ + F L GG V + S +T IP Sbjct: 218 LFEDFTQVDSPLQKRFRGTGLGLSLCKRFAMLLGGEVGVHSEPGEGSTFFVVIP 271 >gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613] Length = 617 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISQELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPED +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++ D +R A L E A++ K+ F+ H+S+ELR+PL I+G+ +LK +L Sbjct: 454 HLEDMIRERTAELAVAKERADAANQAKSEFLAHMSHELRTPLNGILGYAQILKRDT--TL 511 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q + I S LL L++DILD+A ++AG M+LN S + L ++ + ++I K Sbjct: 512 DQHQLDGLTVIQRSGEHLLTLIDDILDIAKIEAGRMELNLSDVPLEQFVSFIAETIRVKA 571 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E + L + V D RL Q +LSNA+ F+ KGS + A F Sbjct: 572 TEKGLDFVCEMPPDLPACVRVDEIRLRQALLNLLSNAIRFTEKGSVRLRVAFLPPARLCF 631 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + + +F+ F VS+ R + G GLGL+I + L GG + + S Sbjct: 632 EVRDTGIGIDQGRLEEIFSPFEQVSD-DRHRFGGTGLGLAISRQLVRLMGGEIHVES 687 >gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 767 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 13/236 (5%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R ER E N A+ KAD + K+ F+ ++S+E+R+P+ +IG L+ + L+ Q Sbjct: 224 RDERE-AELNAAMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQLMLET---DLSDDQ 279 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHEN 665 + Y I +S + L+ ++NDILD + +DAG M L + L + + + A +H+ Sbjct: 280 NLYANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKG 339 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FS 722 + S ++ D R+ QI IL NA+ F+ KGS +GD I S Sbjct: 340 LEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTEKGSVEFAVNGIQSGDEIALELS 399 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +K+ G IP++ +S+F F A Q G GLGL+IV ++L GG +S+ S Sbjct: 400 IKDTGIGIPQNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSISVES 455 >gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] Length = 897 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+E K++F+ ++S+E+R+P+ I+G T L + L ++Q +Y+ + +S+ LL+ Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + +++G M+++ + + + + + E I + V IS + Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL QI + +L NA+ F+ +G ++ + A D + F +++ G I + K++F Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++L GG + + S Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476 >gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 865 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ IK+ F+ +S+ELR+PL I+G++ LL++ + + + ++ +E I ++T+ L+ Sbjct: 490 ANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQTQLI 547 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G + LN + L ++ ++ I+I+ + D LG + D Sbjct: 548 EDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPNLGQVMGDA 607 Query: 685 QRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 RL Q+ +LSNA+ F+S G TV LKA D V + G I + VF+ F Sbjct: 608 NRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQ--IQVIDTGKGITPEFLPYVFDYF 665 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+IV + LHGG V S +G+ T +P Sbjct: 666 RQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQAKSPGDGLGATFTVNLP 715 >gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 523 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 60 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 118 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 119 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 157 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 158 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 213 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 214 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 272 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 273 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 332 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 333 GLGLALSKSMLEMMHGTLSVQNT 355 >gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 858 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 17/248 (6%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQS 607 V+ L EKN + A + K F +VS+ELR+PLT I LL ++L ++ Q Sbjct: 321 VKLNEKLEEKNREIEAATQAKLMFFTNVSHELRTPLTLIETPVEQLLAENQLSNV---QR 377 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS-IATKMHENN 666 Q +E + LL L+N ILD V+ G M L + L L++ V +AT H+ Sbjct: 378 QLLEVAHRNVRTLLKLINQILDFRKVEGGKMTLQLAETDLAALISNVASEFLATAKHK-- 435 Query: 667 IRIKVISDGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721 RIK+ L + D +++ ++ S ILSNA+ F+ + ++ A D G Sbjct: 436 -RIKLTC--HLPEHIKATIDAEKIERVVSNILSNAVKFTPAEGEINVELAADTPQGTATL 492 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 S+ N G I E +F+RF + + G G+GL++ ++F+++HGG + + S DEG Sbjct: 493 SIMNTGKGIAERDLPHIFDRFYQP--QNSKEGTGIGLALAKAFVDMHGGDIGVCSKDEGP 550 Query: 782 TTINCRIP 789 T R+P Sbjct: 551 TVFTVRLP 558 >gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii] Length = 905 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 13/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL+ +L +Q Y+ I S+ Sbjct: 262 RREAL-EASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL---TPRQHDYLNTIQKSA 317 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L ++ L +L+ + +A H ++ + + D Sbjct: 318 DSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDT 377 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731 L + D QRL Q+ + ++SNA+ F+++G+ + D G+ SV + G + Sbjct: 378 PL-ALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTGIGLS 436 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ ++F F N+ Q G GLGL I + I GG + ++S Sbjct: 437 QEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNS 483 >gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] Length = 587 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 586 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 33/334 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +++GV GR+ ++NP L P ++ T + E Sbjct: 253 MTDGVITLDSSGRVLMANPQAEELLGN-----GPQGSF-DLELTVEQVLGE--------- 297 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEA 561 ++ +KSLQ +++ +L + PL N ++ + V V V E+ L E+ Sbjct: 298 LVQRVKHNKKSLQDEVKV-EGRILSVRLAPLLNDESEVWGVVAVLQDVTREKKL----ES 352 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ FV +VS+ELR+PLT + G+T+ L + K+ +Y+ I + L Sbjct: 353 LRR------EFVANVSHELRTPLTYLQGYTEALIDGMVKQPEEKK-KYLNIILEETLRLR 405 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSF 680 LVND+LDL+ ++ G + L I LN L+ V + + + R+ + ++ K L Sbjct: 406 RLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKK--RVNITAELKELPLI 463 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD R+ Q+ ++ NA+ ++ G +I++A+ VK+ G IPED ++ Sbjct: 464 YADEDRMEQVLINLIDNALRYTENGGEIIIEASAGTESVTVCVKDRGPGIPEDELPFIWE 523 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 RF V A G G+GL+IV++ I HGG V Sbjct: 524 RFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKV 557 >gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 837 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T++ + L +A A+ K F+ ++S+E+R+PL I G LL T+ S Sbjct: 434 IDLTETEAMRKELIASKDAAVAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATT---SP 490 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q +YV S+ L +L++DILDL+ ++A + + +L+ +K Sbjct: 491 DDEQQEYVTAALKSAKRLSSLLSDILDLSKIEANKLDICRKAFPFQELVQSLKDIFVLSA 550 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716 E +RIK + DG G V D R+ QI ++ NA+ F+ G + ++ ++A Sbjct: 551 REKALRIKFSVEDGIPGHLVGDEIRVRQILFNLIGNAIKFTETGGVAVKACLLPESADGR 610 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +FSVK+ G I ED VF F ++ +++G GLGL+IV+ + + G + I Sbjct: 611 VRILFSVKDTGIGIREDKVHYVFEPFAQADGSYIREQQGAGLGLTIVKRVVEMLDGILCI 670 Query: 775 SSSDEGVTTINCRIP 789 S TTI+ +P Sbjct: 671 DSKFGSGTTISVALP 685 >gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] Length = 905 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 13/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL+ +L +Q Y+ I S+ Sbjct: 262 RREAL-EASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL---TPRQHDYLNTIQKSA 317 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L ++ L +L+ + +A H ++ + + D Sbjct: 318 DSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDT 377 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731 L + D QRL Q+ + ++SNA+ F+++G+ + D G+ SV + G + Sbjct: 378 PL-ALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTGIGLS 436 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ ++F F N+ Q G GLGL I + I GG + ++S Sbjct: 437 QEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNS 483 >gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 874 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 131/251 (52%), Gaps = 4/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602 ++T +AE LTE +A+ K+ F+ +S+E+R+PL IIGF++++ + G++ Sbjct: 618 DITQWKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIE 677 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N + Y+ I +S L++L+ND+LDL+ ++AG + L ++++ LN+++ + + + Sbjct: 678 NQRYRDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCMAIMQPQA 737 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIF 721 + I ++ L VAD + + QI ++SN++ F+ G VIL + G+ + Sbjct: 738 NRERIVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLTEQGEVVL 797 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G + E F ++ + R G GLGL + ++ + +I S+ + Sbjct: 798 RVRDTGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASFNIRSAVD 857 Query: 780 GVTTINCRIPS 790 T + PS Sbjct: 858 VGTIVEITFPS 868 >gi|160898519|ref|YP_001564101.1| histidine kinase [Delftia acidovorans SPH-1] gi|160364103|gb|ABX35716.1| histidine kinase [Delftia acidovorans SPH-1] Length = 774 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 16/281 (5%) Query: 515 QGTLEL-LSDS-VLEYSIIPLPNAQTMLTFVNVTDSV---RAERALTEKNEALRKADEIK 569 QG EL L D ++E S P +A + F V+D + + AL + A + K Sbjct: 222 QGPRELALGDGRLVEVSTTPTTHAGEPVVFCLVSDVTALRQVQAALVDAKLRAESASQAK 281 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 F+ +S+E+R+PL I+G +LL S++ S+Q++Y+ + +S LL +VND LD Sbjct: 282 TQFLATMSHEIRTPLFGILGTLELLALSRV---PSEQTRYLGAMQQASASLLRIVNDSLD 338 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688 L+ ++AG ++L +LL+ V + ++ + +++ +SD K V D RL Sbjct: 339 LSAIEAGRLQLEAHAFSATELLDSVAAGLLSRAEQKGLQLYAVSDVKTPPLLVGDALRLR 398 Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 QI ++ NA+ F+ G I + + + D F V++ G I + +F+ + Sbjct: 399 QILDNLVGNAIKFTFSGHVAIRLQVMGESEEGTDLRFQVQDTGIGIDPEQQPFLFDPYFR 458 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 A + Q +G GLGLSI GG ++ ++S G+ T Sbjct: 459 AHAATQQQVQGAGLGLSICLRLSQEMGGRLT-AASQPGLGT 498 >gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 132/236 (55%), Gaps = 14/236 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +T++ E R +K V VS+ELR+PLT+I+GF++LLK+ +L N+K+ +Y++ Sbjct: 411 RDITQETEINR----LKTELVATVSHELRTPLTSILGFSELLKSRQLE--NTKRERYLDM 464 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I++ + L LV+D+LD+ ++AG+ ++ L DLL+++ + A + Sbjct: 465 IASETKRLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSDLLEIHAGSTEHHFFHF--- 521 Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D FVA D +L Q+FS IL+NA+ +S +G V + ++ + + G + Sbjct: 522 -DCDESLFVAGDPAQLRQVFSNILNNAIKYSPRGGNVTVDVTCEDDTIQIGITDEGLGLS 580 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 E+ +F++F +A +R G GLGL+I + + LHGG +S+ S EG T I Sbjct: 581 EEDAARIFDKFYRSASEESKRIGGTGLGLAICKEIVQLHGGTISVQSQLGEGTTMI 636 >gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] Length = 914 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L+S Q Y++ I S+ LL Sbjct: 281 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSSSQQDYLQTIEKSANNLL 336 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 ++NDILD + ++AG + L D L+EV + +A HE + + + D ++ Sbjct: 337 TIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGV 396 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + ++ NA F+ +G +V LK RD + F +++ G I E Sbjct: 397 IGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQFVIRDTGIGISERQQS 456 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG + SS Sbjct: 457 QLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSS 498 >gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 660 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E +A+++K++FV ++S+E+R+PL I+GF+ LL + + +Q +Y Sbjct: 416 SEIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTVEAT--DEQKEYA 473 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669 + I +S +LL L++D+LD++ +++G + Y ++N N + + + + ++R+ Sbjct: 474 DIIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTRKNRTRDIDVRL 533 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727 ++ + + D RL Q+ +L+NA+ F+ G ++ L D D +FSV + G Sbjct: 534 QMPKEPYM--LYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTG 591 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 S IPED + VF RF Q G GLGL+I + I GG + I + Sbjct: 592 SGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKN 639 >gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 773 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 200/436 (45%), Gaps = 53/436 (12%) Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYN 430 +TW+ + S+ K E W++ TL ++ S PR I + +++ Q LET+ + Sbjct: 73 QTWQGEVHSLTKLGEP----WYV--FATLVPVIKSPPRVDHLIAIATDISEQKRLETRLS 126 Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCS 488 D + EGV +G + NPA L W +E + G + Sbjct: 127 EGRAFYRSITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQ---GRRFHDTV---- 179 Query: 489 RYYNESDGWDL------------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--- 533 +Y + DG L TS++D +G L +S +PL Sbjct: 180 -HYQKGDGTLLPREQCPVNLTIRSGQSYTSYEDFFTDKRGRLFPIS-----IVAVPLLDK 233 Query: 534 ---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ + F +++ E+ L + + + A++ K+ F+ +S+E+R+P+ IIG Sbjct: 234 EGKPDGHVGV-FNDISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGL 292 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 T L S + N ++ QY+E + SST LL+L+N ILD + V+A +++ L Sbjct: 293 THLALES---TDNEQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKT 349 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGST 707 ++++ Q K + +++++ D + + + D +++ Q+ +LSNA+ F++ G Sbjct: 350 IDKLAQVFQVKAQQK--QLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASGHI 407 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 ++ R+N FSV + G I E + +F FV R G GLGL+I + + Sbjct: 408 ILTVEKREN-QLAFSVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLV 466 Query: 766 NLHGGHVSISSS-DEG 780 L GG +++ S D+G Sbjct: 467 ELMGGDLTLESEVDKG 482 >gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1877 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 22/234 (9%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T + L++ D++K++F+ ++S+ELR+PL +I+GFT+++ G +N + I Sbjct: 1618 TATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGINGPINDLIHNDLSIIHR 1677 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMH-------EN 665 + LLNL+NDILD+A +++G + L T + ++L+EV ++ AT+ H E Sbjct: 1678 NGRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTVGPLATQKHLELLVDIEP 1737 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+++ V ADR R+ Q+ I+ NA+ F+ +GS I I +++ Sbjct: 1738 NLKLPV---------YADRFRIRQVLLNIVGNALKFTEQGSVTIGIDTTPTTRMI-KIQD 1787 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G IP D ++F F V N+ + G GLGL I + +HGG +S+ SS Sbjct: 1788 TGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSMVSS 1841 >gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] Length = 1455 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 124/254 (48%), Gaps = 18/254 (7%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------S 597 E+A K A A+E K++F+ VS+ELR+PLT+++GF +++ Sbjct: 971 EQAREAKARA-EDANEAKSAFLSTVSHELRTPLTSVLGFAKIIRKRLTEKIFPAVTVDDQ 1029 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 K+ + S+ ++ + + L L+ND+LDLA +++G M N I L D++ + Sbjct: 1030 KIKRTMKQVSENLDVVVSEGERLTTLINDVLDLAKIESGRMDWNMKPIFLQDVIGRAVSA 1089 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 ++ E +++K L D +L+Q+ +LSNA+ F+ KGS V + A R+ Sbjct: 1090 TSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQVVINLLSNAVKFTKKGS-VTIDAYREEN 1148 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 I V++ G I E+ +F RF + + +G GLGL I I HGG + + Sbjct: 1149 QLIVEVQDTGIGIAEEDKHKIFERFRQAGDTLTDKPQGTGLGLPICREIIEHHGGIIWMK 1208 Query: 776 SSDEGVTTINCRIP 789 S +T IP Sbjct: 1209 SEPGVGSTFFFSIP 1222 >gi|331086757|ref|ZP_08335834.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409923|gb|EGG89358.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 471 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+ ++ + F+ +VS++ RSPLT+I G+ + + + Q +Y+ I + L Sbjct: 239 LKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIP--QELQGKYLNIILFETERLT 296 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L D+L L D + L+ + L+D + S I I+++ D ++ + Sbjct: 297 DLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFDPRIQNVF 356 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 ADR ++ Q+ +L NA+ FS+ S+++L+ NG SVK++G IP+ V+ R Sbjct: 357 ADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKSLTKVWER 416 Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F S+ RG+ ++G GLGL+IV+ I HG ++++ S+ EGV T Sbjct: 417 FYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVIST-EGVGT 459 >gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] Length = 786 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AER L +K A A++ K+ F+ ++S+ELR+PL I+GF +L+++ GSL S + + Y Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL++++DIL ++ ++A +KL I L LN ++ + ++ I Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALNSALTLVSKEAASKSVSI 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + G L +AD + L QI I+ NA+ F+ + V L+ NG + + G Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPEQGRVALRGRSCNGFVHLFIGDTGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785 IP+ + F + +N R +G GLGL+I S LHGG + I S+EG+ T + Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743 Query: 786 CRIP 789 R+P Sbjct: 744 VRLP 747 >gi|251770948|gb|EES51533.1| periplasmic sensor signal transduction histidine kinase [Leptospirillum ferrodiazotrophum] Length = 496 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL + L + K+ FV S+ELR+PLT+I GF +LK LG LN +Q + + Sbjct: 248 RALNDMAHQLGELSRKKSEFVTIASHELRTPLTSIRGFIAMLKRQTLGPLNEEQQKSLSV 307 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ L+ LVN +LDL ++AG M+ + L L+ + + + ++ Sbjct: 308 VAEEIDHLVTLVNQLLDLGRIEAGQMRPEIRELELVPFLDRIGERYRLTAQSSGRIFRME 367 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D ++ +F+ D RL QI +L NA F+ +G V L RD F + + G +P Sbjct: 368 VDPEIPAFIQTDAHRLAQILDNLLGNAFKFTQEGEEVSLVVKRDFTRIHFEISDTGIGVP 427 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F++F A R G+GLGL++ + + GG + I + T +P Sbjct: 428 PENIPFLFDKFYQVAPFDSRTKEGLGLGLAVTKGIVLALGGSIEIRQNIPKGTCARVTLP 487 >gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1424 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L ++ + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 845 QARQELEDRAKQLSSASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 904 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M + + L LL+ V+ + + + Sbjct: 905 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRRLLDYVEATFRPMTTQKGLTF 964 Query: 670 KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD---------NGD 718 + S G V D RL Q+ +LSNA+ F+ +G T++++ A D G Sbjct: 965 AITSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGGVTLLIEPASDAEVPEPVHRGGP 1024 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F V++ G IPE +++F F R+ G GLGLSI +L GG V++ Sbjct: 1025 VVAFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1084 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1085 STPGQGSTFTLYLP 1098 >gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 545 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] Length = 545 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL ++ + K E I ++V + ++ S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] Length = 545 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL ++ + K E I ++V + ++ S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229819354|ref|YP_002880880.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia cavernae DSM 12333] gi|229565267|gb|ACQ79118.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia cavernae DSM 12333] Length = 698 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ D +KN FV +S+ELR+PLT+I G LL G ++ + + V SS L Sbjct: 452 REVDRLKNEFVSVISHELRTPLTSIRGSLGLLAGGAAGPISDQARRMVTIALGSSERLTR 511 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFV 681 L+NDIL++ ++AG + + + +L + + + +++ G + G Sbjct: 512 LINDILEVERMEAGAAPIELADHDVRTVLAAAVDQVQGLADADGVSVRL---GDVTGRVH 568 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 AD R++Q +L NA+ FS++GS V++ AAR G+F+ F V ++G IP D + +F Sbjct: 569 ADADRVVQTLINLLGNAIKFSARGSQVVV-AARPAGEFVEFRVVDHGRGIPPDRLEMIFG 627 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 RF V ++ ++ G GLGL+I S + HGG + + S+ EG T Sbjct: 628 RFEQVDSSDAREKGGTGLGLAISRSIVERHGGRIWAQSTPGEGST 672 >gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1359 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 12/249 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++TD A+ L E A+ K+ F+ +S+E+R+P+ +IG T LL ++L Sbjct: 699 TITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQL- 757 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 ++Q ++V+ I SS LL ++NDILD + +++G + L L + E + +++ Sbjct: 758 --TAQQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLSS 815 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAAR 714 K + I + + D ++ S V D RL QI ++SNA+ F+ G VI + + Sbjct: 816 KARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTETGDVVISVTPTAEISE 875 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + F+V++ G I +F F V + Q G GLGL+I + L GG + Sbjct: 876 EQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGGKM 935 Query: 773 SISSSDEGV 781 + S+EGV Sbjct: 936 WV-ESEEGV 943 >gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 597 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 182/395 (46%), Gaps = 33/395 (8%) Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNP 461 I+T++ GG F + ++ K Q +I +++GV F DG I ++NP Sbjct: 225 ILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQLASILSSMADGVITFNRDGEILITNP 284 Query: 462 A---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 F W E+ G +A + +LFA ++ +++ +S + TL Sbjct: 285 PAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------ELFARVVR--EEKEQSTEVTL 331 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 + + +L + PL +TM V +V R +TE+ R+ D+++ F+ +VS+ Sbjct: 332 QGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE----RRLDKLRKDFIANVSH 378 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+P+ + G+++ + + + ++ + + I S + LVND+LDLA ++AG + Sbjct: 379 ELRTPIAMLQGYSEAI-IDDIAASEKEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGHI 437 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 +L Y + L + V + E I + + D R+ Q+ + ++ NA Sbjct: 438 ELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIALDPDRIEQVLTNLIDNA 497 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 + + G TV L V+++GS IPE+ VF RF A R G GL Sbjct: 498 IRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGL 557 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GL+I ++ + H G +++ S TT + +P++ Sbjct: 558 GLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] Length = 1935 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 22/251 (8%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVE 611 AL + E +A K+ F+ ++S+E+R+P+ I+G +L ++ S +S+ +Y+ Sbjct: 1547 ALEAQKEVAEQATRAKSEFLANMSHEIRTPMNGILGMNELALMRVS-----DSQAREYLL 1601 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 S LL+++NDILDL+ ++AG + L+ L D+L+ + ++ E + I Sbjct: 1602 LAKKSGLALLDIINDILDLSKIEAGKIALDQEPFDLRDVLDSTLKPLSLGADEKGLHIHH 1661 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVK 724 + D + D+ RL Q+ + ++SNA+ FS +G + ++ D +F+V Sbjct: 1662 TLEDCAPQRLIGDKGRLRQVLTNLVSNAVKFSDQGVVRVTVSNNGEASSPDRTQLLFTVA 1721 Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780 + G IP D S+F F S+AH + G GLGL+I + L GG + + S +G Sbjct: 1722 DQGIGIPPDKLASIFESFAQLKSSAHI-KYGGTGLGLTICRQLVELMGGSIWAESEVGKG 1780 Query: 781 VT---TINCRI 788 T TI C + Sbjct: 1781 STFFFTIECDV 1791 >gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1282 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 123/507 (24%), Positives = 226/507 (44%), Gaps = 81/507 (15%) Query: 317 VAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 ++ I D + +++ N+ FV+ + ++ A L NP L+S +PE++ + W Sbjct: 503 ASVVITDSDGTIEYVNQKFVQKSGFSVEEA-LGQNP------RILKSG-MMPEEIYKELW 554 Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLET 427 + + E H +G V+ +P GTI F E++T ++ +E Sbjct: 555 QTITAGLEWKGELHNKRK---DGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEA 611 Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486 + ++Q I+ L G+A+ + RI + NP SL+ + + I Sbjct: 612 ELRENERIQRTLIESLPIGLAIIDGESRIIEEVNPLAASLFGADRETI--------IGRE 663 Query: 487 CSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-- 541 C + D +L II + D+ + L L +D + +P+ M+T Sbjct: 664 CHHFLCPQD--ELSCPIIDRGLAVDNSDR-----LMLRADG----TTLPVLKTVRMITIK 712 Query: 542 --------FVNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYE 579 FV++ + +AE ++ E N L A K+ F+ ++S+E Sbjct: 713 GRRKLLECFVDIRERKQAEESVREANRQLEAAIVRAERLAREAESASRAKSQFLANMSHE 772 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+P+ IIG T L ++ + K+ ++++ + S+ LL L+NDILD + ++AG +K Sbjct: 773 IRTPMNAIIGMTHLAMQTRD---DDKRGRFLDTVRHSAESLLGLLNDILDFSKMEAGQLK 829 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698 L+ + LL EV ++ E +R+ + I+ V D RL QI ++ NA Sbjct: 830 LSTAPFSPRQLLEEVMATLQMPAGEKGLRLAMDIAPNLPPCLVGDDLRLRQILLNLVGNA 889 Query: 699 MDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749 + F++ GS + L+ ++ F+V + G I E+ +FN F N++ Sbjct: 890 IKFTAAGS-ITLRITQEQPSSGGSEPLIHFTVIDTGIGIAEEKRALIFNSFEQADNSYVR 948 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGLSI + + L GG + + S Sbjct: 949 QYGGTGLGLSICKQLVTLMGGKIWVES 975 >gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] Length = 949 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++T+ AER L + E A+ K+ F+ ++S+E+R+P+ I GF DLL+++ Sbjct: 297 ICTAEDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQST- 355 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ +Q ++ ++S +LL ++NDILD + ++A + + L + + + + Sbjct: 356 --NLSLEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLL 413 Query: 659 ATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 K E + + +IS+G V D RL QI + ++SNA+ F++KG + LK Sbjct: 414 VPKAVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEE 473 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + F VK+ G I +D ++F F R+ G GLGL+I + + GG Sbjct: 474 NETAVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGE 533 Query: 772 VSISS 776 + + S Sbjct: 534 IHVES 538 >gi|269962211|ref|ZP_06176564.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833042|gb|EEZ87148.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 780 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 133/244 (54%), Gaps = 14/244 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+A E +A +K K++ + +VS+E+R+PL IIG+ +LK K G+ S + +E Sbjct: 397 EKAAKEALDATKK----KSTLLSNVSHEIRTPLNAIIGYLHMLKIEKCGTYCSHE---LE 449 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S +L++VND+LD +D+ KL+ + +N + +++++ + +++ + Sbjct: 450 GISTASNTILDIVNDLLDFERLDSVNYKLHPKHVAINKIARDLEKTFHPLAKQKGLKLNI 509 Query: 672 ISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + +G G+ D R Q S I++NA+ F+ G I + D+ D +F+V++ Sbjct: 510 VKEGIGGAHQLFIDELRFQQALSNIITNAIKFTDIGEIEI-SISMDSFDGQRMVVFAVRD 568 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 G I ++ +++FN F ++ G GLGL+I ++ INL GG +++ S E + Sbjct: 569 TGRGIRQEDLETIFNSFEQANQEDKQFGFGLGLAITKAIINLMGGVLAVESKIEQGSIFK 628 Query: 786 CRIP 789 +P Sbjct: 629 IALP 632 >gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 1513 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 142/270 (52%), Gaps = 15/270 (5%) Query: 532 PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PLP+ T F+ ++TD+V A ++ E ++ +A+ K+ F+ +VS+ELR+PL Sbjct: 1088 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1147 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +G +L+ +L SL+ +Q QYV S L+ L++DILDL+ ++AG + + Sbjct: 1148 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1204 Query: 647 LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + +L++EV + + I ++ I+ G D RL Q ++ NA+ F+ KG Sbjct: 1205 IRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1264 Query: 706 ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 V A GD I +V++ G IPED +S+F F + ++ + G+GLGL Sbjct: 1265 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1324 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 IV + L GG + + S+ + T ++ IP Sbjct: 1325 IVCRLMELFGGSIEVESAPDMGTAMHFAIP 1354 >gi|305665542|ref|YP_003861829.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170] gi|88710298|gb|EAR02530.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170] Length = 511 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 22/261 (8%) Query: 535 NAQTMLTFVNVTDSVRAERALTE--------------KNEALRKADEIKNSFVQHVSYEL 580 N+ +L ++TD + +A+ + KN L + + KN+F+Q+ S+EL Sbjct: 88 NSHILLVIYDLTDHYLSYQAIAQARNESIINSELMVLKNIELEERERFKNTFIQNFSHEL 147 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT++I T++++ ++L + Q + V ++ S+ L L+NDI+ ++ + +G ++L Sbjct: 148 RNPLTSVISITNVIEGTELS---NDQQRMVSFLKESNANLKLLLNDIMSISMISSGKLQL 204 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699 L LL V+ + TK + +++ + K+ FV DR RL Q+ + +L NA+ Sbjct: 205 RNKEFSLYRLLELVEFTYKTKAAQKSLKFIMNRGKKVPEFVEGDRLRLFQVITNLLDNAL 264 Query: 700 DFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 F+++G+ TV + R N F V ++G I E+ ++F F G+ G G Sbjct: 265 KFTNEGNIGLTVKVNQKRANKVSLRFEVYDSGIGISEEKLDAIFESFTKLESEGKNEGSG 324 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGLSIV+ L G ++ ++S Sbjct: 325 LGLSIVKGLAELMGSNIRVTS 345 >gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1022 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 11/259 (4%) Query: 542 FVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F S RA+ R L A+E K+ F+ ++S+E+R+PL ++G D+L + L Sbjct: 277 FTMFARSARAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLT 336 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q Y + I S ++L+ ++ND+LD+A +D+G + + + L L E Sbjct: 337 PV---QRNYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFA 393 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----D 715 + E ++ + + + V D RL QI ++ NA+ F+SKG ++ + + Sbjct: 394 QAREKDLELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEK 453 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773 +G SV + G + E+ +F RFV GQ R G GLGL+I + N GG + Sbjct: 454 SGRLHISVVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIG 513 Query: 774 ISSSDEGVTTINCRIPSKE 792 ++S +T + IP E Sbjct: 514 VTSEKGVGSTFSFWIPVIE 532 >gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM223] gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM223] Length = 1194 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ Q LT N +T+ E AL + +A E +N F+ VS+ELR+P+ ++G Sbjct: 631 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 690 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + + S +SQ + + +S L + VNDILD + ++A ++L+ +T L D Sbjct: 691 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 746 Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L + +S + V D +L V D RL QI + +LSNA+ F+ KGS Sbjct: 747 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 805 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 I + F F V + G + E S+F FV RR G GLG+SIV + + Sbjct: 806 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 864 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L GGH+ + S + TT+ +P Sbjct: 865 ELMGGHIHVESEIDQGTTVRVSLP 888 >gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris RCH1] Length = 1535 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 142/270 (52%), Gaps = 15/270 (5%) Query: 532 PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PLP+ T F+ ++TD+V A ++ E ++ +A+ K+ F+ +VS+ELR+PL Sbjct: 1110 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1169 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +G +L+ +L SL+ +Q QYV S L+ L++DILDL+ ++AG + + Sbjct: 1170 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1226 Query: 647 LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + +L++EV + + I ++ I+ G D RL Q ++ NA+ F+ KG Sbjct: 1227 IRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1286 Query: 706 ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 V A GD I +V++ G IPED +S+F F + ++ + G+GLGL Sbjct: 1287 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1346 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 IV + L GG + + S+ + T ++ IP Sbjct: 1347 IVCRLMELFGGSIEVESAPDMGTAMHFAIP 1376 >gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1255 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 128/256 (50%), Gaps = 16/256 (6%) Query: 533 LPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 LP +T + + +VTD L + A + K+ F+ +S+E+R+P+ I+G Sbjct: 559 LPGGETRVYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGM 618 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 T+LL ++L + +Q ++ + + S LL ++ND+LD + ++AG ++L + L L Sbjct: 619 TELLLGTRL---DDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTL 675 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + + +A + HE + + G + + V AD RL Q+ + +++NA+ F+ G + Sbjct: 676 IEDTLDLLAPRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFTEHGEVTV 735 Query: 710 ----LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760 L R + F V++ G + ++ +F F + AH G R G GLGL+I Sbjct: 736 DLRFLPRPRAGAPAMLEFRVRDTGIGMAAELLPRLFTAF-TQAHGGMARRYGGTGLGLAI 794 Query: 761 VESFINLHGGHVSISS 776 + L GG + + S Sbjct: 795 SRQLVELMGGQIDVVS 810 >gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] Length = 921 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 17/258 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608 + + L EK E L ++ + K+ F+ ++S+ELR+PL +I+ +++L S+ G+L +Q + Sbjct: 500 KTKHQLEEKAEQLIQSSQYKSEFLANMSHELRTPLNSILLLSEMLADESEEGNLTEEQKE 559 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I +S + LLNL+NDILDL+ V+AG M++ +L V A + + Sbjct: 560 FARVIHSSGSDLLNLINDILDLSKVEAGKMEIVIEETNTRELPVYVGNQFAYLAEQKGLE 619 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI---- 720 +K+ D + + D++R QI +LSNA+ F+ GS +A G ++ Sbjct: 620 LKIDVDDNVPDLIYTDQRRFQQIVKNLLSNAVKFTENGSVTFRMRKVSAETAGKYVKTEG 679 Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +V++ G IPE +F F R+ G GLGLSI F L GG + Sbjct: 680 ADFWLEVAVQDTGIGIPEKKQDLIFEAFQQGDGATGRKYGGTGLGLSICREFARLLGGTI 739 Query: 773 SISSSDEGVTTINCRIPS 790 + S+ +T IPS Sbjct: 740 CLDSTVGKGSTFILYIPS 757 >gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 922 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+L +Q Y+ I S+ Sbjct: 280 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSA 335 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L++ L DLL + +A H + + V D Sbjct: 336 DSLLGIINEILDFSKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 395 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI---FSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A +N D + S+++ G + Sbjct: 396 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEENDDSVQLRISIQDTGIGL 453 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 454 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 502 >gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 919 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%) Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 K GET D LS V V+ P+ R K+ + + + EE I AT Sbjct: 585 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 640 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 NE + W ++T F+ E G +E++ + Y I L + ML Sbjct: 641 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 682 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E E D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ +Y Sbjct: 683 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 732 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ + I Sbjct: 733 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---I 789 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ D + ++DR RL Q+ S ++NA+ F+S GS + ++ G F V + G Sbjct: 790 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 848 Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I ++ +F RFV S H G GLGLSI +S + GG + + S + Sbjct: 849 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 897 >gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 1474 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ KN F+ ++S+E+R+P+++++GF DLL++ L K+ +Y+E I +S LLNL+ Sbjct: 1105 ANKHKNFFLANMSHEIRTPISSVLGFADLLRSDDLTK--DKKLRYIEIIDNNSKQLLNLI 1162 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKVISDGKLGSF- 680 +DI+D++ +++ +K+ Y + L+ + + I + + +++++ I L + Sbjct: 1163 DDIIDVSKIESDELKIVYKDCNVAQLIENLTLTFEQIKVQKEKTHLKLEAIIPSNLRNLN 1222 Query: 681 -VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D +RL Q+ S +++N++ FS KG T+ ++ F VK+ G I + K +F Sbjct: 1223 ISTDPRRLEQVLSNLINNSIKFSDKG-TISYGFQKNENYLTFFVKDEGIGIAKCKQKEIF 1281 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF V+ + G GLGLSI ++ + L GG +++ S TT IP K Sbjct: 1282 ERFKQVNYKDSAKYGGTGLGLSICKAIVTLLGGDITVESKRYKGTTFKFNIPIK 1335 >gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] Length = 816 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 14/224 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ +IG DLL+ +KL + +Q QY++ I S LL ++NDIL Sbjct: 418 KSQFLAQMSHEIRTPMNGVIGMADLLRQTKL---DVQQKQYLDIIVNSGRTLLTIINDIL 474 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQ 685 D + + AG M L I ++ E Q E I +K D K G+ D Sbjct: 475 DFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLK--KDWKEGASPIIYGDST 532 Query: 686 RLLQIFSKILSNAMDFSSKGS-TVILKAA-RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 RL Q+ + +LSNA+ F+ KG T+ +K RD+ ++ V++ G I + + +F+ F Sbjct: 533 RLRQVLTNLLSNALKFTEKGGITLRVKPCLRDSEPYLQVEVEDTGIGISVENQQRLFSAF 592 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 RR G GLGL+I + + L GG + + S+EGV +I Sbjct: 593 SQAEASTTRRFGGTGLGLAISKQLVELMGGEIGV-RSEEGVGSI 635 >gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 16/260 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 V V S RAL + N+ R A K+ F+ VS+E+R+P+ +I +LL Sbjct: 171 IVAVRQSSMTTRALQDANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLL 230 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + ++L + +Q ++V + + +L+ L+ND+LD + ++AG M+L I L D + + Sbjct: 231 RRTRL---DREQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSL 287 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + K N +R+KV I D D RL Q+ +LSNA+ F+ G+ I Sbjct: 288 IRLWEPKASANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFTEDGTISIAVDW 347 Query: 714 R-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769 R ++G I SV + G IP D +F+ F G R G GLGL+I + G Sbjct: 348 RAEDGRLIVSVADTGCGIPADRLAHIFDSF-EQVDAGTTRKYGGTGLGLAISRRLAEIMG 406 Query: 770 GHVSISSSDEGVTTINCRIP 789 G ++ S + + +P Sbjct: 407 GRLTAESVEGEGSVFTLSLP 426 >gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1162 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + +++ E+ + +A +A K+ F+ ++S+E+R+PL ++ LL+ + LG Sbjct: 383 YSDISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP 442 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +Q +YV+ + SS LLN++NDILD + ++AG ++L L ++ V + + Sbjct: 443 ---EQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKR 499 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 + + V D + V D RL QI ++ NA+ F+ KG ++ +A + Sbjct: 500 ARSKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEKGYILVQVSLAEAGEEK 559 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 SV++ G IP M + +F F + RR G GLGL+I S + L GG + + Sbjct: 560 ARLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQV 619 Query: 775 SSSD-EGVT 782 S + EG T Sbjct: 620 MSREGEGST 628 >gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 803 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 + + NA+T ++F+ +++ V AE L + ++++K F+ +S+E+R+PL Sbjct: 281 LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 340 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 ++G +LL+ ++L N Q +YV Y+ S +LL+ V+D+LD+ DAG + Sbjct: 341 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 397 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +++LL ++ + A+ +N + G K+ ++D RL + ++ NA+ F+ Sbjct: 398 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 457 Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758 +G + GD + + + G + ED+ K VF+ FV+ A+ G GLGL Sbjct: 458 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 517 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 SI + F+N GG + + S +T R+P E Sbjct: 518 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 551 >gi|169827424|ref|YP_001697582.1| hypothetical protein Bsph_1858 [Lysinibacillus sphaericus C3-41] gi|168991912|gb|ACA39452.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 364 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A++ KN V ++++++++PLT++IG+ LL +K + K+ +YV S L + Sbjct: 136 QEAEQRKNDLVVYLAHDIKTPLTSMIGYLSLLDEAKDMPIEQKE-KYVTITLEKSYRLEH 194 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ ++ + + L +I LN +L +V + + V DG++ + A Sbjct: 195 LINEFFEITRFNLQSIILEKESIPLNYMLMQVADEFYPLLAPRGQKAIVHIDGEI-TIYA 253 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L ++F+ IL NAM +S ST+ + A +N + S N G +IP + K +F +F Sbjct: 254 DGNKLARVFNNILKNAMAYSDPNSTIEISAKNENNETFISFSNTGKTIPSEKLKMIFEKF 313 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + NA Q G GLGL+I + HGG ++ +SS+E T +PS Sbjct: 314 YRLDNARSTQTGGAGLGLAISNEIVQAHGGTITATSSNEK-TIFTVMLPS 362 >gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] Length = 910 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 9/248 (3%) Query: 547 DSVRAERALTE--KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 D ER E + EA+ KA+E+K+ F+ +S+ELR+PL IIG T+++ + + Sbjct: 396 DDAELERKEAENARAEAV-KANEVKSEFLAKMSHELRTPLNAIIGLTEMMHEDAIEFDDE 454 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + ++ + + LLNL+NDILD++ ++AG M+L+ L L +V SI + Sbjct: 455 DYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIASIKPLSDK 514 Query: 665 NNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +I+++ D + LG D+ RL QI ++SNA+ F+ +G V L A +N +V Sbjct: 515 KSIKLE--GDFEVLGDHFNDQTRLKQILLNLMSNAVKFTDEG-VVTLSARTENDRLNIAV 571 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G + E+ C +F FV R+ G GLGL+I F + GG + ++S Sbjct: 572 TDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGLAISRKFSRMMGGDIFVTSEVGKG 631 Query: 782 TTINCRIP 789 +T IP Sbjct: 632 STFTLSIP 639 >gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1005 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + +A +A + K+SF+ ++S+E+R+PL IIG T L+ +L + KQ Y+ Sbjct: 257 KDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSN---KQKDYMRK 313 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ LL ++ND+LDL+ ++AG ++++ V + + K+ E + + Sbjct: 314 IDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFE 373 Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 D ++ D R+ Q+ ++SNA+ F+ +G I + D +FSV++ G Sbjct: 374 IDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEITDSDISILFSVRDTG 433 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP + + +F F RR G GLGL+I ++ +++ GG V++ S Sbjct: 434 VGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVES 484 >gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 869 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 12/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE+AL EA A + K+ F+ ++S+E+R+PL ++G LL+TS G Sbjct: 467 DITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGVMGILQLLETSAEGQ-- 524 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q+ S+ L L++DILDL+ V+AG + + L++ L +V Sbjct: 525 -EQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFRLHETLVQVLDLFVPTAV 583 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDF 719 ++ + ++ + G S V D RL Q+ ++ NA F++ G + A+ G Sbjct: 584 QSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTTGYVNVEAYPLPAKHPGQL 643 Query: 720 --IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 FSV + G I + K++F F VS + +G GLGLSI + + L GG++++ Sbjct: 644 RIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLGLSICKHLVTLMGGNMAV- 702 Query: 776 SSDEGVTT 783 S+ GV T Sbjct: 703 ESETGVGT 710 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T+ +VT+ E L + EA A K F+ ++S+E+R+P+ IIG TDLL S Sbjct: 147 TYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDS--- 203 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 ++ +Q +Y++ + +S+ LL ++NDILD + ++AG + + L+ +++E +++A Sbjct: 204 TIAGEQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALAL 263 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718 + + + + + S + D RL QI ++ NA+ F+ G V ++ + NG Sbjct: 264 RASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCVQRNGG 323 Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V++ G I D +++F F + R+ G GLGL+I L GG + Sbjct: 324 AASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIG 383 Query: 774 ISS 776 + S Sbjct: 384 VDS 386 >gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 845 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 8/253 (3%) Query: 541 TFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +F + DSV+ + L + E +A K++F+ +S+ELR+PL I+GF +LLK Sbjct: 591 SFNRMADSVQDSFKRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE-- 648 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 N +Y I S LLNLVN+ILDLA ++AG M L L++E Sbjct: 649 -LDNPSHQEYATVIQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQ 707 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + +++G V D RL QI + +LSNA+ F+ +G + L + Sbjct: 708 VTATAKGLGFDLNVAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQGK-ISLTVRPAGQE 766 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+V + G+ IP + VF +F + + + G GLGLS+V GG V++ S Sbjct: 767 IAFAVSDTGAGIPPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLES 826 Query: 777 SDEGVTTINCRIP 789 + +T +P Sbjct: 827 AVGVGSTFTVYLP 839 >gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 3/249 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD +E+AL + A AD K F+ +S+ELR+PL IIGF+D++ + L Sbjct: 336 DVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAIIGFSDMIAQEQALMLG 395 Query: 604 SKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q +Y + I+ S LL++VN ILD++ +++G ++ L +A K Sbjct: 396 AAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFAPRASLMHCCNLLALKA 455 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 EN I + + L D + QI +++NA+ F+ +G V + AA Sbjct: 456 RENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGGQVSVSAAVSGSHLTLR 515 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G I D K + F QRR G GLGLSIV+S + LH G +++ S Sbjct: 516 ISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKSLVALHLGDLTVQSRLGE 575 Query: 781 VTTINCRIP 789 T + ++P Sbjct: 576 GTAVTVKLP 584 >gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 933 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 13/248 (5%) Query: 542 FVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 V V + V A+R L + + ++ A K+ F+ ++ +E+R+P+ ++G + L S+ Sbjct: 426 LVGVIEDVTAKREALELRRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSE 485 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L KQ Y+E I ++S LLN++NDILD + ++AG ++L + + L+++L + Sbjct: 486 L---VPKQRGYLEKICSASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMH 542 Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 K E + K+ +L + D RL Q+ + ++ NA+ F+ +G V+ + G Sbjct: 543 HLKAQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGNALKFTRRGEVVVAVKPVEQG 602 Query: 718 DFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + F V++ G I + + +F F R+ G GLGLSI + L GG Sbjct: 603 EGMVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGE 662 Query: 772 VSISSSDE 779 + + S E Sbjct: 663 LQVQSVPE 670 >gi|259414842|ref|ZP_05738765.1| sensor protein GacS [Silicibacter sp. TrichCH4B] gi|259349293|gb|EEW61040.1| sensor protein GacS [Silicibacter sp. TrichCH4B] Length = 466 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 28/246 (11%) Query: 552 ERALTEKNEAL---RKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 E A+ E+ L RK E NS F+ H+S+E+R+PL ++G L + LN Sbjct: 58 EAAVLERTSELDTARKDAEAANSAKSVFLAHMSHEIRTPLNGVLGMAAALAET---DLNL 114 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q + +E + S +LL+++NDILDL V+AG ++L+ + +NDL V + ++ + Sbjct: 115 EQQKMLEVLIESGDLLLSVLNDILDLTKVEAGELELDITPCSINDLFESVCKQFELQVRQ 174 Query: 665 NNIRIKVISDGKL------GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712 + ++ G L F D RL Q+ +LSNA+ F+ +G+ + L Sbjct: 175 KGLSFAIVYGGMLEEDNVWAEF--DPTRLRQVLGNLLSNAVKFTLEGAITMKATVTQLND 232 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 R N D FS+++ G IPED +F F RR G GLGL I L GG Sbjct: 233 GRLNLD--FSIRDTGCGIPEDKQHRLFQPFAQADASISRRYGGTGLGLVISRKICQLMGG 290 Query: 771 HVSISS 776 +S +S Sbjct: 291 DISFTS 296 >gi|254562691|ref|YP_003069786.1| sensor protein gacS [Methylobacterium extorquens DM4] gi|254269969|emb|CAX25947.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens DM4] Length = 914 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E ++ +A+ K+ F+ +S+E+R+P+ ++ +LL ++ L +Q +Y + I+ Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 315 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD A V+AG +++ + D+ + V A + + + D Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730 G + S + D RL Q+ +SNA+ F++ G ++ ++ RD + +V + G I Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMERDASGPVLRIAVSDTGIGI 435 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D +F F RR G GLGLSI E I GG V + S +T RI Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESCLGEGSTFWARI 495 Query: 789 P 789 P Sbjct: 496 P 496 >gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] Length = 545 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +LL ++ + K E I ++V + ++ S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 585 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 21/260 (8%) Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 LL + P+P + ++T++ R E+ + F+ +VS+E Sbjct: 313 LLPGRTFTATTAPMPGGGAVAVLHDLTETERVEKT--------------RRDFIANVSHE 358 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 LR+PLT+I G+ + L S+ + ++VE I ++ + L D+L LA V++G + Sbjct: 359 LRTPLTSIQGYAETL--SEAFREDDPAREFVEIIRRNAQRMYRLTEDLLTLARVESGEQR 416 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + + +LL E + + I + V++ + G DR L Q+FS +L NA+ Sbjct: 417 MEFHAVTPGELLAEAELNFQDHHRGAGIELSVMNTAQ-GEVEVDRDALRQVFSNLLDNAV 475 Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 + G ++L +RD D +F +++ G IP + +F RF V A Q G GL Sbjct: 476 KYGGTGGKILL-GSRDVEDRVLFYIRDFGPGIPSEHLARLFERFYRVDKARSVQSGGTGL 534 Query: 757 GLSIVESFINLHGGHVSISS 776 GL+I + + HGG + S Sbjct: 535 GLAIAKHIVRAHGGEIRAES 554 >gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 609 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 134/271 (49%), Gaps = 14/271 (5%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSP 583 I+P ++ + V T R E +T L+ K + + FV +VS+ELR+P Sbjct: 333 IVPREGSEPFMMRVTFTPIHRREIGITGTIAVLQDVTEQEKLEASRREFVANVSHELRTP 392 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 LT I +T+ L+ G+L KQ ++V I + ++ LV D+L L+ +D+ L+ Sbjct: 393 LTTIKSYTEALED---GALEDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALH 449 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + ++L +V+ + +M + +IR + + + + DR + Q+ ++SNA+ + Sbjct: 450 KEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKY 509 Query: 702 SSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + G T+ + A+ + G SVK+ G IP+ +F RF V A G GLGL Sbjct: 510 TPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGL 569 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SI + HGG +++ S E TT+ +P Sbjct: 570 SIAREIVRAHGGFITLQSELEKGTTVTFTLP 600 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 171/386 (44%), Gaps = 47/386 (12%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD---- 495 ++ L GV V+ +G I +N + L++ E P + + A + Y N +D Sbjct: 449 LEALPVGVLVYDKNGNIYYANQKLKDLFRHEH---IPEVSLEDFAGINNLYLNGTDQVYP 505 Query: 496 --GWDLFAAI------ITSFDDERK------SLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 L A+ I + + SL T SD + Y I Sbjct: 506 TKALPLIRALKGKIVPIENIEIRHPDQTICCSLMATPIFDSDEAIVYGIA---------V 556 Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 F ++T +AE + L EKN+AL++ DE+K+ F+ + S+ELR+PL +IG ++ + Sbjct: 557 FEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESM 616 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 G L Q Q + I+ S L LVNDILD + + ++L + L +++ + Sbjct: 617 LDGVGGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIVEVI 676 Query: 655 KQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + +K N I++I++ + AD RL QI ++ NA+ F+ G+ I + Sbjct: 677 --VVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITAS 734 Query: 713 ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D + + ++ + G IP D +F F R+ G GLGL+I + + Sbjct: 735 VLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVE 794 Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792 LH G + + S + +T + +P E Sbjct: 795 LHQGKIWLDSVVDSGSTFSFTLPISE 820 >gi|170748504|ref|YP_001754764.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655026|gb|ACB24081.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 909 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+E + A+ K++F+ +S+E+R+P+ ++ +LL S L ++Q +Y E I+ Sbjct: 260 LSEAKQVADAANAAKSAFLATMSHEIRTPMNGVLVMAELLAGSDL---PARQRRYAEVIA 316 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S LL ++NDILD A V+AG ++L + +L + A + + + ++ Sbjct: 317 RSGRSLLAIINDILDFAKVEAGKLELERVPVSPAELADTAVTLFAERARTAGLDLAAEVA 376 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIP 731 + + D RL Q+ S +SNA+ F+ G V ++ A D GD + +V + G IP Sbjct: 377 PEVPHAILGDPVRLGQVLSNFVSNALKFTEAGH-VSVRMAIDAGDGCLVIAVSDTGIGIP 435 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +D ++F+ F RR G GLGLSI + + GG V+++S +T + RIP Sbjct: 436 QDKLATIFSAFSQADQSTTRRFGGTGLGLSIAQQIVAAMGGTVAVTSRVGAGSTFSARIP 495 >gi|255535261|ref|YP_003095632.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium 3519-10] gi|255341457|gb|ACU07570.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium 3519-10] Length = 576 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 116/215 (53%), Gaps = 1/215 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ VS+E ++P++++ LL+ +G+LN++Q + VE I + LL Sbjct: 346 FKELDVAKTNFIGTVSHEFKTPISSMKMSIQLLENDHVGTLNTEQKELVENIKDDANRLL 405 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + ++L+L V++G ++L+ +L+ ++ T + + ++ + + Sbjct: 406 KITRELLNLTQVESGNIQLSQEPADPKELVRRAVEATKTPAEQKKMTVEATLPENVSQVL 465 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD ++ + I ++SNA+ +S +G TV +K + + F+VK+ GS IPE VF+R Sbjct: 466 ADEEKTVWILINLISNAIRYSYEGGTVKVKVSEEGDHVKFTVKDQGSGIPEQYLAKVFDR 525 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + Q+ G GLGL+I + FI GG + + S Sbjct: 526 YF-RVPGTQKEGTGLGLAISKEFIEAQGGTLRVES 559 >gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella melaninogenica ATCC 25845] gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella melaninogenica ATCC 25845] Length = 878 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 5/255 (1%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ F+ + V R + K A++ K F ++S+ELR+PLT I + + Sbjct: 343 SIILFLLIGIMVYIYRTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIMHD 402 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +LNS+Q ++ + + +L LV++ILD V G M+L S L++ + + Sbjct: 403 D--NLNSQQRSMLQIVQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIML 460 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + +I I + + + AD+ ++ +I +LSNA+ ++S+G + L A +NG Sbjct: 461 FSASAQKKHIAISMNAPDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENG 519 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + SV +NG I D +F+RF + G RG G+GL+IV++F LH G VS +S Sbjct: 520 RVMISVADNGCGISSDELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSV 577 Query: 778 DEGVTTINCRIPSKE 792 + +T IP ++ Sbjct: 578 EGKGSTFTIHIPVRQ 592 >gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 571 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ALR+ ++++ FV +VS+ELR+PLT+I G + L + + ++ +Y+ S + Sbjct: 335 ALRQLEQMRRDFVANVSHELRTPLTSIQGIIEGLIDGVIPA--AEAGRYLRVAHGESLRM 392 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV D+LDLA ++AG + L ++L+ V+ + E + I+ L Sbjct: 393 NRLVQDLLDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLPPL 452 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +A+ RL Q+ + ++ NA+ FS G + + A R + +V++ G IP + V+ Sbjct: 453 LANENRLEQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPHVW 512 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 +RF V + + G GLGL+IV+ + GG V++ SS EG + Sbjct: 513 DRFYRVEKSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGAS 558 >gi|81427893|ref|YP_394892.1| two-component system, sensor histidine kinase [Lactobacillus sakei subsp. sakei 23K] gi|78609534|emb|CAI54580.1| Two-component system, sensor histidine kinase [Lactobacillus sakei subsp. sakei 23K] Length = 399 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 9/279 (3%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQ 574 G L ++D LE+ I N + V DSV T ++ E RK ++ K+ + Sbjct: 112 GELHYIADGHLEHRI----NLRVNRDLQRVIDSVNTLVDSTVRSMEEERKIEKSKDELIT 167 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 +VS++LR+PLT+IIG+ L++ ++ + + ++Y + + LV D+ + V Sbjct: 168 NVSHDLRTPLTSIIGYLGLIEDNQYQT-KDELTKYTHTAYVKAQQMKVLVEDLFEYTKVR 226 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 + +T + +L ++ S + + N++I V AD ++L ++F+ + Sbjct: 227 QTSTPIAKTTFDMEQMLEQLAASFELEAQKKNMQITVECQPTPLMMEADTEKLGRVFNNL 286 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR- 752 ++NA+ + G +IL A + + I V N+G IP D +F+RF A R Q Sbjct: 287 IANALKYGKGGKQIILSAEKVGQEAIIKVSNDGQQIPSDSLNQLFDRFYRVEASRSQETG 346 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G GLGL+I +S + LHGG++ S+ + +T+ +P K Sbjct: 347 GTGLGLAITQSIVALHGGYIYADSTPQ-LTSFVIHLPLK 384 >gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 583 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D ++N F+ ++S+ELR+PL I G+++ + + ++ + + I S + Sbjct: 344 KRLDIMRNDFINNISHELRTPLVMIQGYSEAI-LDDVAETQEEKKEMAKIIGEESIRMNR 402 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +VN++LD + ++AG + L + L+D N++ AT +NNI +K+ D L S+ Sbjct: 403 MVNEMLDSSRMEAGFINLIKLDVQLDDFFNKLFTRFATMSEKNNIEMKLTIDPNLDSYYM 462 Query: 683 DRQRLLQIFSKILSNAMDFSS------KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 D ++ Q+F +++NA+ +S K + + + + + V++NG+ I E+ Sbjct: 463 DEDKMNQVFVNLINNAIRHTSLSNKENKKVEIWVHLEKIMDEILIEVRDNGTGISEEDVP 522 Query: 737 SVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+RF +G + G G+GLSIV++ I HGG V + S TT +P Sbjct: 523 YVFDRFYKADKSRTVMKGNKTGTGIGLSIVKNIIEAHGGFVEVKSVINEHTTFVVHLP 580 >gi|298244840|ref|ZP_06968646.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552321|gb|EFH86186.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1110 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 11/238 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616 N A ++ ++ K+ F+ S+ELR+PLT + T+LL + ++ G+L+ Q+ + + Sbjct: 876 NSARKELEQRKDDFISMASHELRNPLTALALHTNLLHRQLARHGTLD--QAPALSGMETQ 933 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LV ++LD++ + AG ++ I L+ LL E IA M + + +++ G Sbjct: 934 INKISRLVEELLDVSKMQAGRLEYREEMIDLDALLRE----IADTMQQTHPSHRILVGGA 989 Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + S +ADR RL Q+F +LSNA+ +S TV + + V+++G IP + C Sbjct: 990 VRTSLLADRDRLGQVFINLLSNAIKYSPGAETVEMDLSASREMVTIRVQDHGLGIPREQC 1049 Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF QR G+G+GL IV + HGG +++ S +T P K Sbjct: 1050 DKIFERFYRATGSRQRAIPGLGMGLYIVAEIVKHHGGSITVDSEVGKGSTFTVIFPKK 1107 >gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM573] gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus VM573] Length = 1205 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ Q LT N +T+ E AL + +A E +N F+ VS+ELR+P+ ++G Sbjct: 640 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 699 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + + S +SQ + + +S L + VNDILD + ++A ++L+ +T L D Sbjct: 700 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 755 Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L + +S + V D +L V D RL QI + +LSNA+ F+ KGS Sbjct: 756 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 814 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 I + F F V + G + E S+F FV RR G GLG+SIV + + Sbjct: 815 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 873 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L GGH+ + S + TT+ +P Sbjct: 874 ELMGGHIHVESEIDQGTTVRVSLP 897 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 11/253 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T++ ++TD +AE AL + + A+ K+ FV ++S+E+R+P+ +IG T LL + Sbjct: 424 TVVISRDITDRKKAEEALRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDT 483 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L+ +Q ++ E I +S+ LL ++NDILD + ++A ++L L L +V Sbjct: 484 ---DLDERQREFAETIQSSAANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDL 540 Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713 +A K N+ + D + S V D RL Q+ I +NA+ F+ +G V+ Sbjct: 541 LAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLIINICNNAIKFTREGEVVVRVVGEEI 600 Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D F++ + G IPED +F F R G GLGLSI + + L G Sbjct: 601 KEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNG 660 Query: 771 HVSISS-SDEGVT 782 + +SS EG T Sbjct: 661 EIGVSSRPGEGAT 673 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 IDH +G+AV G D RIK +NPA+ S+ + + G H R I + ++Y NE Sbjct: 201 AIDHSVDGIAVAGSDKRIKFANPAWASMHGLTQKEVE-GAHAR-IFHSTAQYENE 253 >gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 666 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 ++ E+ +A +A ++K+ F+ ++S+E+R+PL IIGF+DLLK S L S++ QYV I Sbjct: 284 SIGERQQA-EQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESNLD--ESERLQYVNII 340 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L ++NDILDL+ V+AG +++ + LN LL ++ + ++ + + ++ Sbjct: 341 HRTGEHLTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNR 400 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G + + D RL QI + I+ NA+ F+ +G V + + +F+VK+ G I Sbjct: 401 RGIVPDMIRTDPLRLRQILTNIIGNAIKFTDQG-YVRMTYEISGSNLLFTVKDTGVGISS 459 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-----VTTIN 785 ++F F + N+ + G GLGL + + GG V + S+ G + I+ Sbjct: 460 AQRSNLFQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKIS 519 Query: 786 CRIP 789 IP Sbjct: 520 LDIP 523 >gi|329954548|ref|ZP_08295639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328527516|gb|EGF54513.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 637 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E + +++ +K++F+ ++S+E+R+PL I+GF+D+L + Q Y Sbjct: 400 SEAALREAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLSAGD--TAIDDQRGYF 457 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I A+S +LL L+NDILD++ ++A + L + + +V S+ +N RI Sbjct: 458 EIIKANSDLLLRLINDILDVSRLEADRVTLTLEKCDVVQVCMQVTASVTQARRSSN-RIV 516 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728 S D QRL Q+ +LSNA F+ G T+ LK D N +FSV + G Sbjct: 517 FESAADSLEIRTDIQRLQQVVINLLSNADKFTENG-TITLKLEPDMRNRTALFSVSDTGC 575 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP + K VF RF Q G GLGLSI + + GG + I S Sbjct: 576 GIPPEKRKRVFERFEKLNEYAQ--GTGLGLSICKLIVEKWGGRIWIDS 621 >gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] Length = 601 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E AL +A K+ F+ +S+ELR+PL IIGF+++L ++ Sbjct: 321 DVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLTHEDEMKID 380 Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + ++ +Y I+ S LL++VN ILD++ +++G +L + L + K Sbjct: 381 AARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASSCNLMVLKA 440 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + + + + L D + QI +LSNA+ F+ +G +V + A + Sbjct: 441 RDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVSAEVAGRELALR 500 Query: 723 VKNNGSSIPED----MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G I +D + K+ F S + G+R G GLGLSIV++ + LHGG + + S Sbjct: 501 VTDTGIGIGKDDLAHLGKAFFQAGAS--YHGRREGTGLGLSIVKNLVALHGGEMRVDSEI 558 Query: 779 EGVTTINCRIP 789 + TT++ R+P Sbjct: 559 DCGTTVSVRLP 569 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 18/263 (6%) Query: 543 VNVTDSVRAE------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +++T+ +AE R L + EA A+ K+ F+ ++S+ELR+PL I+GFT LL Sbjct: 1214 IDITERKQAELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLL- 1272 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + + S+Y+ I S LL L+NDIL L+ V+AG + L L+ LL ++ Sbjct: 1273 -RQPQFSGEPSEYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLEN 1331 Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-------STV 708 + K +++++ +D + + D +L Q+ +LSNA+ F+S G S Sbjct: 1332 MFSLKAANKRLQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQP 1391 Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766 + N ++ F V++ G+ I D + +F F+ + A ++ GLGL+I F+ Sbjct: 1392 VPAEMSSNSCYLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVKQSTGLGLAISREFVE 1451 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG +++ S + + IP Sbjct: 1452 LMGGKITVESQLKHGSVFQFTIP 1474 >gi|167644163|ref|YP_001681826.1| histidine kinase [Caulobacter sp. K31] gi|167346593|gb|ABZ69328.1| histidine kinase [Caulobacter sp. K31] Length = 531 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E R+PL ++G LL+ ++L ++Q YV + S LL+LVND+LD A + A Sbjct: 18 LSHEFRTPLNGVLGMARLLEGTRL---TAEQRAYVGALRESGDHLLSLVNDVLDFARLGA 74 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 ++L+ +++ + +LL +V + ++ + HE NI I + L + +AD RL Q+ Sbjct: 75 TAIELHTASVDVENLLRQVAELLSPRAHEKNIEIAWAAAPGLPAILADEGRLRQVLLNYA 134 Query: 696 SNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHR 748 NA+ F+ G + +++ + G FSV++ G + + ++F FV +H+ Sbjct: 135 GNAIKFTETGGVLLSAELVVPTSDSEGRLRFSVRDTGPGVAPEARAAIFEAFVQTDPSHQ 194 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGL+IV G + Sbjct: 195 AQLGGAGLGLAIVARLAGAMSGEAGVGG 222 >gi|116053634|ref|YP_793961.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] gi|296392349|ref|ZP_06881824.1| putative two-component sensor [Pseudomonas aeruginosa PAb1] gi|313111575|ref|ZP_07797374.1| putative two-component sensor [Pseudomonas aeruginosa 39016] gi|115588855|gb|ABJ14870.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] gi|310883876|gb|EFQ42470.1| putative two-component sensor [Pseudomonas aeruginosa 39016] Length = 595 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + +G+ +F GRI+ +NP A R L+ + + G I I + E+ Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314 Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550 + A++ DE +L+ D +L +S+ P+ P ++ + V D Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +TE+ R + +++ FV S+ELR+P+T + LL+ S+++ + Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + L+ L+ND+L+ + G+ KL ++ L DLL + +Q K + ++ Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFTPKGEARRVSLQ 477 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +L DR ++ ++ +L NA+ SS+G + L+A R + +V++NG I Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P +F FV + + G GLGL++ + I LHGG +++ S Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582 >gi|310780111|ref|YP_003968443.1| histidine kinase [Ilyobacter polytropus DSM 2926] gi|309749434|gb|ADO84095.1| histidine kinase [Ilyobacter polytropus DSM 2926] Length = 780 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 133/247 (53%), Gaps = 9/247 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE L E L A IK +F+ +VS+EL++PLT ++GFT LL + + K+ + Sbjct: 528 KAEIKLLETKRELENALNIKTAFLANVSHELKTPLTAVMGFTKLLLKRE---DDPKKQKL 584 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNI 667 +E I + L+ +++ILDL+ ++AG ++L Y I L ++++ + + I +++ N Sbjct: 585 LENIQVAGDTLVTFIDNILDLSKLEAGKVELKYRRINLRNMIDNI-ERICNGLNKGRNVF 643 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 I +++ F+ D RL ++ +++NA F+ G V +K N S+ + G Sbjct: 644 FIMNVTEKVPKYFMGDEVRLTEVILNLVNNAFKFTKFGK-VEVKFDSYNDKLFISITDTG 702 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP+D S+F R+ + +++G GLGL+IV+ +++ G + + S + TT Sbjct: 703 MGIPQDKLSSIFERYHQLDLNENIEKKGFGLGLTIVKEIVDMMEGEIEVKSKHKEWTTFK 762 Query: 786 CRIPSKE 792 IP K+ Sbjct: 763 ITIPIKK 769 >gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 661 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 15/235 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE EAL A E K++F+ S+ELR+PL G L G Sbjct: 401 DITERKRAE-------EALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGE 453 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661 + + ++ I+ + LV D+LD++ + AG + L+ L L+ E + + ++ Sbjct: 454 TGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQ 513 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +H + ++ +G + DR RL Q+ + +LSNA+ +S +G V++KAA D Sbjct: 514 LHPLRVELQEQLEG-----LWDRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEGVQL 568 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SVK+ G IP + +F RF AH + G+GLGL+I + + HGG + + S Sbjct: 569 SVKDCGVGIPPEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVDS 622 >gi|241895289|ref|ZP_04782585.1| sensor histidine kinase [Weissella paramesenteroides ATCC 33313] gi|241871595|gb|EER75346.1| sensor histidine kinase [Weissella paramesenteroides ATCC 33313] Length = 375 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 12/236 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A++A+ E++E R DE+ V +VS++LR+PLT+I+G+ L+ G ++ + + Sbjct: 126 AQQAMMEEHEIERSKDEM----VTNVSHDLRTPLTSILGYLGLIINDN-GQQKLRREEIM 180 Query: 611 EYISAS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y + S + +LV D+ D V KL+++ + L +L ++ + + + + Sbjct: 181 KYAQTAFDKSGQMKSLVEDLFDYTQVHQVDFKLHWAPLDLAAMLQQLAVNYELEAEQKGV 240 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKN 725 I +S+ + V D RL ++F +++NA+ + + V L KA + V N Sbjct: 241 VISAVSNPAVIEMVGDPDRLARVFMNLINNALKYGEGATFVRLSAKAVTEENQVEIRVTN 300 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 NG+ IP++ K +F+RF V ++ + G GLGL+IV IN HGG V + S D+ Sbjct: 301 NGAKIPDESIKRLFDRFYRVESSRNTKTGGTGLGLAIVNGVINAHGGQVRVESDDK 356 >gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 374 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ERA KNEA A+ K+ F+ +VS+ELR+PL I+GF++++K+ L S + Y Sbjct: 137 ERA---KNEA-ETANRAKSDFLANVSHELRTPLNAILGFSEIIKSDTLDS--GRYPDYAA 190 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+L+NDILDL +++G ++ + L+ L + + + + IR++ Sbjct: 191 AIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIVEMVRPIAQDAGIRLRT 250 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI 730 + + DR+ + Q +LSNA+ FS +G V L A G +V + G + Sbjct: 251 TVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAAPTGGVCIAVVDTGVGM 310 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + K++ F S +RG GLGL+I +S + G + I S+ Sbjct: 311 ASETIKAIGQPFASPGGHVDKRGAGLGLAITKSIVGAMKGELEIQST 357 >gi|83952587|ref|ZP_00961318.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM] gi|83836260|gb|EAP75558.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM] Length = 594 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 12/301 (3%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--------QTMLTFVNVTDSVRA 551 A I+ + D ++ + +G L+D + E I+P+ + ++ V++T+ + Sbjct: 292 LAPILNTLDRDQSTARGAPVPLADRIFEPRILPIESPIRTRRNLLGWTISLVDITEREHS 351 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +AL E A+ K+ F+ +S+ELR+P+T++ G DL G + + + Sbjct: 352 AQALREALVRAEAANHAKSQFIAMISHELRTPMTSVKGGLDLALNGFPGEPSEPIRKLLN 411 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S +L L++D+LDL +D ++L+ + +++LL + + A + + +R+ + Sbjct: 412 IAQRNSMRMLKLIDDVLDLQKLDLNTLRLHPVALDMDELLANLLEEHAGQADQAKVRLTI 471 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +SD K+G V D R+ Q+ ++SNA+ FS +G+ V L SV+++G I Sbjct: 472 VSD-KIGQQVHVDPNRVRQVVGNVISNAIKFSPEGAHVDLSVQLKPEALRLSVRDSGIGI 530 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P VF RF + + G GLG+ I + I GG +S S T + + Sbjct: 531 PAKSEDRVFGRFHQIESDLTPTHGGSGLGMHIAKVLIERMGGAISYESVLGQGTVFHIDL 590 Query: 789 P 789 P Sbjct: 591 P 591 >gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 870 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 137/259 (52%), Gaps = 18/259 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+VT+ E+A K+ A A + K+ F+ ++S+E+R+P+ I+GFT LL S L + Sbjct: 362 LVDVTERREKEKAERAKDTA-EAASKAKSEFLANMSHEIRTPMNAILGFTSLL--SPLIT 418 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + +Q Y++ I +S L++L+NDILDL+ ++AG M++ Y +VL + ++++ + Sbjct: 419 -DPRQKNYLQSIQSSGKNLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWI 477 Query: 662 MHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 + + ++ I I+ + D RL QI ++ NA+ F+ G + L A R+ G Sbjct: 478 IQDKGLQFITSIASDVPECVLLDEVRLRQILFNLVGNALRFTESG-WIRLSAWREAGAGD 536 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGG 770 + V++ G I + +F F + GQR G GLGL+I +S + + GG Sbjct: 537 GSFCLVMVVEDTGMGIQPEAHNRIFESFRQQS--GQRARVYGGTGLGLTISKSLVEMLGG 594 Query: 771 HVSISSSDEGVTTINCRIP 789 +S+ S + R+P Sbjct: 595 TISVQSRPGAGSVFEIRLP 613 >gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 778 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610 >gi|207721961|ref|YP_002252399.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206587133|emb|CAQ17717.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 875 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ERA + EA R+A E K+ F+ +S+E+R+P+ ++G +LL + L +Q Sbjct: 358 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 414 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + V SS LL++++DILD A ++AG + + + L +L + +A++ HE ++ Sbjct: 415 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLASRAHERSL 474 Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722 ++V D + + V+ D RL Q+ S +LSNA+ F+ +G S + AA D I Sbjct: 475 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 534 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G I + ++F FV RR G GLGL+I L GG + + S+ Sbjct: 535 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 594 Query: 781 VTTINCRI 788 TT+ R+ Sbjct: 595 GTTLTLRL 602 >gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 593 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 15/235 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE EAL A E K++F+ S+ELR+PL G L G Sbjct: 333 DITERKRAE-------EALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGE 385 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661 + + ++ I+ + LV D+LD++ + AG + L+ L L+ E + + ++ Sbjct: 386 TGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQ 445 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +H + ++ +G + DR RL Q+ + +LSNA+ +S +G V++KAA D Sbjct: 446 LHPLRVELQEQLEG-----LWDRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEGVQL 500 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SVK+ G IP + +F RF AH + G+GLGL+I + + HGG + + S Sbjct: 501 SVKDCGVGIPPEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVDS 554 >gi|4104606|gb|AAD10266.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K] Length = 399 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 9/279 (3%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQ 574 G L ++D LE+ I N + V DSV T ++ E RK ++ K+ + Sbjct: 112 GELHYIADGHLEHRI----NLRVNRDLQRVIDSVNTLVDSTVRSMEEERKIEKSKDELIT 167 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 +VS++LR+PLT+IIG+ L++ ++ + + ++Y + + LV D+ + V Sbjct: 168 NVSHDLRTPLTSIIGYLGLIEDNQYQT-KDELTKYTHTAYVKAQQMKVLVEDLFEYTKVR 226 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 + +T + +L ++ S + + N++I V AD ++L ++F+ + Sbjct: 227 QTSTPIAKTTFDMEQMLEQLAASFELEAQKKNMQITVECQPTPLMMEADTEKLGRVFNNL 286 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR- 752 ++NA+ + G +IL A + + I V N+G IP D +F+RF A R Q Sbjct: 287 IANALKYGKGGKQIILSAEKVGQEAIIKVSNDGQQIPSDSLNQLFDRFYRVEASRSQETG 346 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G GLGL+I +S + LHGG++ S+ + +T+ +P K Sbjct: 347 GTGLGLAITQSIVALHGGYIYADSTPQ-LTSFVIHLPLK 384 >gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG] Length = 1307 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 708 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 767 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M+++ + I L L++ V+ + E N+ Sbjct: 768 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 827 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ +I A D D I Sbjct: 828 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 887 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I E + +F F R+ G GLGLSI Sbjct: 888 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 947 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 948 LLGGEIDAQSQPGRGSTFTLYLP 970 >gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] Length = 950 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ VR E++L E A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 443 VLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 502 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S V ++ SS++LL +++DILD + +++ +K+ +++ + + + Sbjct: 503 ---SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLS 559 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 560 LVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAWVAEGYL 618 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G IP +F+ F QR +G GLGL+I E IN+ G + + S Sbjct: 619 AFRVRDTGVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 679 PGMGSQFIVRIP 690 >gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 603 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 7/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V +V R +TE+ R D+++ F+ +VS+ELR+P++ + G+++ + GS + Sbjct: 349 HVRGAVAVMRDMTEE----RLHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAGS-D 403 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + + I S + LVN++LDLA ++AG ++LN + + + + + + Sbjct: 404 EEKKELAQIIYDESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVAD 463 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +NN+ + D D R+ Q+ + ++ NA+ ++S +V L+ F V Sbjct: 464 DNNVELMGEIDQSDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGFRLDV 523 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G+ IPE+ VF RF A R G GLGL+IV++ + H G VS S Sbjct: 524 EDTGAGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEG 583 Query: 782 TTINCRIP 789 TT + +P Sbjct: 584 TTFSVFLP 591 >gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 737 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 22/248 (8%) Query: 542 FVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 F D++ A +AL ++ L+ A++ K+ F+ VS+E+R+PL ++G T+LL Sbjct: 203 FQEAGDNIAARQALEHLSQELKDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMTELL 262 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + +L + QYVE I S + LL L++D+LD + ++AG +++ T L L++ + Sbjct: 263 REREL---DGTSHQYVETIHESGSQLLTLISDLLDFSKIEAGHLEIERETFSLQALIDSL 319 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713 + + + + I ++ + D RL Q+ +LSNA+ F+S+GS T+I+K Sbjct: 320 LRLLEPRAQHVEL-ISDVAPSVPSHSLGDAGRLRQVLLNLLSNALKFTSRGSVTLIVKPM 378 Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA----HRGQRRGVGLGLSIVESFINLH 768 R GD++ F V++ G I + + +F F A ++G G GLGL+I + + Sbjct: 379 R--GDWMHFEVRDTGCGIEDADPQRLFQPFYQGASAVHYQG---GTGLGLAISKRLVEAM 433 Query: 769 GGHVSISS 776 G + +SS Sbjct: 434 QGRIGVSS 441 >gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 854 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE+ ++ +++KN FV VS+ELR+PLT+I G L+ LG Q +E Sbjct: 486 LTER----KRIEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++S L +L+ND+LD+ + AG M L +LL E S ++ +R + Sbjct: 542 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 601 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +V D RL Q+ LSNA F+ G + + ++ SV + G IPE Sbjct: 602 TDVRVWV-DGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAF 660 Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF +F + Q+ G GLGL+I + I GG V TT C +P Sbjct: 661 RSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 717 >gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] Length = 683 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 281 DVTNDALREKEPWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++S Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 518 EPGVGSEFTCIIP 530 >gi|182434881|ref|YP_001822600.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463397|dbj|BAG17917.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 682 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +E + + V V++ELR+PL+NI G+ L+ ++ G L +V + + +L ++++ Sbjct: 451 EEQRKAMVSDVAHELRTPLSNIRGW---LEAAQDG-LADPDPAFVSSLLEEAVLLQHIID 506 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+ DLA DAG+++L+ + +LL +V + + + + V + AD Sbjct: 507 DLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPALRADPV 566 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 RL Q ++SNA+ + +G V L+A + G + V + GS IP + VF+RF Sbjct: 567 RLRQAVGNLVSNAVRHTPEGGRVTLRAYACEEEAGTVLVEVADTGSGIPAEDLPHVFDRF 626 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789 RR G GLGL+IV + HGG V +S + EG T + R+P Sbjct: 627 WRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVAGEGSTFV-LRLP 675 >gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610 >gi|84501217|ref|ZP_00999422.1| hypothetical protein OB2597_12668 [Oceanicola batsensis HTCC2597] gi|84390508|gb|EAQ02996.1| hypothetical protein OB2597_12668 [Oceanicola batsensis HTCC2597] Length = 508 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 6/240 (2%) Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364 LT T+ L++ +AIFD++R L N + ++L + FL+ P + + LR+ Sbjct: 258 LTKTFA---QLSIGLAIFDRHRRLALFNPALIDLTALSPDFLSGRPDHLSFFDRLRNEMI 314 Query: 365 LPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422 +PE ++ TW++ I V ++E ++++TW LP+G T V +P G ++FE+++ + Sbjct: 315 MPEPRDYTTWRDKIIDVIAAAENGSYEETWTLPHGSTYRVTGRPHPNGAVAFLFEDISAE 374 Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482 V L ++ + + +D L + +AVF P G + +N A+R LW + Sbjct: 375 VTLTRRFREQIDLSQAAMDSLDDALAVFSPQGVLSYTNTAYRELWNIPGEDRPLDLRVSE 434 Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 ++ T + + W F F +ER + + L+ PL T+ F Sbjct: 435 VSRTWQEHCDPDPVWGDFRDFAVGF-EERTEWDARVRMQDGRGLDCRFKPLQGGATLAAF 493 >gi|254441946|ref|ZP_05055436.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198250619|gb|EDY74937.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 578 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 + + NA+T ++F+ +++ V AE L + ++++K F+ +S+E+R+PL Sbjct: 55 LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 114 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 ++G +LL+ ++L N Q +YV Y+ S +LL+ V+D+LD+ DAG + Sbjct: 115 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 171 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +++LL ++ + A+ +N + G K+ ++D RL + ++ NA+ F+ Sbjct: 172 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 231 Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758 +G + GD + + + G + ED+ K VF+ FV+ A+ G GLGL Sbjct: 232 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 291 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 SI + F+N GG + + S +T R+P E Sbjct: 292 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 325 >gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 948 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 773 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLG 600 FV R R L + A+ +AD+ K+ F+ H+S+E+R+P+ +++G + +L+T Sbjct: 361 FVKDITEHRRLRELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRT---- 416 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+++Q + ++ + S LL+L+NDILDL V+ G + L + ++ ++ V+ ++ Sbjct: 417 PLSAEQKECMDVLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSL 476 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714 + + NI + I+ + + D QRL QI +L NA+ F+ G V L +R Sbjct: 477 QARQKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAVKFTDNGE-VSLHVSRAPDAV 535 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +GD +F+V++ G I +F +F S A + G GLGL+I ++L GG + Sbjct: 536 HDGDLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTI 595 Query: 773 SISSSDEGVTT 783 + S+ GV T Sbjct: 596 RL-ESEPGVGT 605 >gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 929 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 172/365 (47%), Gaps = 50/365 (13%) Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 K GET D LS V V+ P+ R K+ + + + EE I AT Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 NE + W ++T F+ E G +E++ + Y I L + ML Sbjct: 651 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 692 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E E D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ +Y Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ + + Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 799 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ D + ++DR RL Q+ S ++NA+ F+S GS + ++ G F V + G Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858 Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 I ++ +F RFV S H G GLGLSI +S + GG + + S + + Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEERKGSRF 913 Query: 785 NCRIP 789 IP Sbjct: 914 WFTIP 918 >gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 534 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 41/287 (14%) Query: 506 SFDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 SFD+E K+ QG L ++ S+ + + P A LT +N +TE+ Sbjct: 247 SFDNEELEYKTRQGDLRIVLASIKKIVLDGEPCA---LTIIN---------DITERKR-- 292 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++N F+ VS+ELR+P+ ++ G DLL T +LG L + Q + + ++ L+ Sbjct: 293 -----LENEFISVVSHELRTPMHSLAGALDLLSTGELGVLTEQGQQILSVATTNAERLIR 347 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVNDILDL + +G M +N S + +L+ + +S+ ++++V S Sbjct: 348 LVNDILDLERLKSGKMSVNRSNCNIANLVTQAVESMQAMADNAQVQLQVQSMSV--PVTV 405 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---------------GDFIFSVKNNG 727 D R+LQ + +LSNA+ FS G TV+L D ++ + G Sbjct: 406 DCDRILQTLTNLLSNAIKFSPAGGTVLLTVELDKPTLEEPASSNTLQTVPQLHITLSDQG 465 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 IP + +++F RF RR G GLGL+I + HGG + Sbjct: 466 RGIPFEQLETIFERFQQVDASDSRRKGGTGLGLAICRQILQQHGGRI 512 >gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 653 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 24/272 (8%) Query: 541 TFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 T +N + ERA L E A+ K++F+ ++S+ELR+PL I+GF+ LL S+ Sbjct: 152 TALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLL--SR 209 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L + + I+ S LL L+NDIL+++ ++AG + L+ + L+ L + Sbjct: 210 DSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLF 269 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 K+ I +K + ++ AD ++L Q+ +L NA+ F+++G + A+R Sbjct: 270 QQKVFSKKINLKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVASRIYL 329 Query: 718 D-------------FIFSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLS 759 D FSV++ G + E+ + +F+ F +H+G G GLGLS Sbjct: 330 DDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQG-VHGTGLGLS 388 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 I F+NL GG +SISS T + IP K Sbjct: 389 ISRQFVNLMGGELSISSQLNKGATFSFSIPVK 420 >gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610 >gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 778 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 34/312 (10%) Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF--VNV 545 S + NE DL + + T ++S+ E L D++ + +PN + M F N+ Sbjct: 52 SSFMNEKAYADLTSQLKTEIGQRKQSI----EKLIDAI---RTLDMPNEEGMTDFNPDNL 104 Query: 546 TDSV-----RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDL 593 + V + ER +NE LR+A E+ K+ F+ +S+E+R+PL +IGFTDL Sbjct: 105 IELVEFLKRQIERRKMIENE-LRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDL 163 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L +K + Q Y+ ++ S+T LL+++NDILD + ++AG ++L L + + Sbjct: 164 LLKTK---TDETQHHYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGRQ 220 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-- 710 V I H+ + + + D + FV AD+ RL QI +LSNA+ F+ +G + Sbjct: 221 VADMIKLPAHQKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQGEIELRIE 280 Query: 711 ----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 + A F+V++ G I E + +F F RR G GLGL+I Sbjct: 281 RIHDQPADGLTSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISNKL 340 Query: 765 INLHGGHVSISS 776 + L G + ++S Sbjct: 341 LGLMGSRLQLTS 352 >gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 948 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%) Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516 F + EE P +R A RY ES DG +A++ IT+ D L+G Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++ D ++D AE AL E +A K+ F+ + Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+GF LL S Q + +I + LL L+N++LD+A ++AG Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694 + L+ + L+ +L E ++ + NI +K + KLG VADRQRL+Q+ + Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 LSNA+ ++ V ++ + + SV + G I + +F F G Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL++ +S + + G +S+ ++ Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610 >gi|312888745|ref|ZP_07748309.1| response regulator receiver sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298745|gb|EFQ75850.1| response regulator receiver sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 539 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 12/262 (4%) Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 S+I L N Q + N+ + ++ + L+E E +K E K F+ ++S+E+R+PLT+II Sbjct: 125 SLINLVNYQRQIKRQNI-ELEKSRQELSEAVEQTQKIREAKEIFLANMSHEIRTPLTSII 183 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G LLK S LN+ Q + ++ + SS LL LVNDIL+ A +DAG + +N + + Sbjct: 184 GLNHLLKQS---PLNADQQELIKLMEYSSQSLLTLVNDILESAKIDAGKITINRAETNII 240 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 +L+ + + E + + D L S +AD RL QI I++NA+ F+++G Sbjct: 241 NLVQTICNLSSPIAKEKGLALSCHFDTDLPSAILADSLRLNQILLNIINNAIKFTTEGGV 300 Query: 708 -VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 V LKA + + + F + + G I + +FNRF + + G GLGLSIV Sbjct: 301 EVTLKAIQKEPNRVLLQFIITDTGIGISQSGISKLFNRFEQAEVKTWEKFGGTGLGLSIV 360 Query: 762 ESFINLHGGHVSI-SSSDEGVT 782 + L GG +++ S+ +G T Sbjct: 361 KRISELKGGELTVLSTPGQGTT 382 >gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1037 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 16/257 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + ++T+ R E L E+ LR+AD K+ F+ +++ELR+PL I LLK S+ Sbjct: 644 YYDITERKRNEAKLAEQARQLREADWRKDEFLAMLAHELRNPLAPISNALQLLKQSRFAG 703 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS---- 657 +++ + I + L LV+D+LD++ + G+++L + + ++++ ++ Sbjct: 704 ---QEAWCLAVIDRQAAHLQRLVDDLLDVSRITRGVIELRPEPLDVTEIIDRAVETSRAL 760 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 I + HE IR +G V RL Q+ S +L+NA F+ +G + + R+ Sbjct: 761 IEARRHELRIRTPTEPIRLMGDLV----RLTQVVSNLLANAAKFTDEGGCIAIDVEREAT 816 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 + V++NG I + +F+ F RG R G+G+GLS+V+ + +HGG V Sbjct: 817 TVLIRVRDNGLGIEPERLPQLFDLFY-QVDRGIARTEGGLGIGLSLVKRLVEMHGGSVEA 875 Query: 775 SSSDEGV-TTINCRIPS 790 S G + R+P Sbjct: 876 LSPGLGQGAELRVRLPG 892 >gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 817 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 + + NA+T ++F+ +++ V AE L + ++++K F+ +S+E+R+PL Sbjct: 294 LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 353 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 ++G +LL+ ++L N Q +YV Y+ S +LL+ V+D+LD+ DAG + Sbjct: 354 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 410 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +++LL ++ + A+ +N + G K+ ++D RL + ++ NA+ F+ Sbjct: 411 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 470 Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758 +G + GD + + + G + ED+ K VF+ FV+ A+ G GLGL Sbjct: 471 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 530 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 SI + F+N GG + + S +T R+P E Sbjct: 531 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 564 >gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 930 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 10/241 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617 E L +AD +K+ F+ +++ELR+PL I LL T G+L+ + S+ E IS + Sbjct: 547 QEGLLQADRLKDEFLAMLAHELRNPLAPIATAAHLLST---GTLDPEGLSRLSEVISRQA 603 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L++D+LD++ V G + L+ + + +N ++ E + + + + + + + Sbjct: 604 GHMTRLIDDLLDVSRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQR 663 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 DR RL+Q+ + +L+NA+ ++ G + L+ D+ V++NG + ++ Sbjct: 664 NLVSGDRMRLVQVLANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNGIGMSRELLAI 723 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG----VTTINCRIPSK 791 F F R G+G+GL++V++ ++LHGG V + S G +T + R+P Sbjct: 724 AFELFTQGERTSDRTQGGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLPRLPQD 783 Query: 792 E 792 + Sbjct: 784 D 784 >gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 698 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V A R L E A+ K+ F+ VS+ELR+PL I+G DLL ++ L+ Sbjct: 156 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 212 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE S LL LV+ ILD + ++AG + L + L+ V + +A + Sbjct: 213 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 272 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 + + I + I+D V D R+ QI + NA+ F+ G + A G Sbjct: 273 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEGQGEGL 332 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + +V++ G IPE+ +F F G GLGL+I + G + S+ Sbjct: 333 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVG 392 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 393 RGSTFRVMLP 402 >gi|46202120|ref|ZP_00053728.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 512 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 27/319 (8%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------Y 491 E ++ +G VF D + L N F + + + PGT + A R+ Y Sbjct: 17 EAVEEFGQGFTVFDRDLNLILCNNRFLEMLNFPASLVHPGT----VFADFMRFNALRGEY 72 Query: 492 NESDGWDLFAAIITSFDD------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545 D +L A + ER+ GT V+E PLP + T+ ++ Sbjct: 73 GPGDVEELVAERVDRARGFAPHCFERERPDGT-------VIEVRGTPLPGGGFVTTYTDI 125 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ RAER L + + IK +F+ +S+E+R+P+ ++G LL S L + Sbjct: 126 TERKRAERMLIHAKDKAEETARIKANFLATMSHEIRTPMNGVLGMLHLLTGS---PLTPE 182 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++E +S+ LL+++NDILD + ++AG MK+ + L L+ E+ + + Sbjct: 183 QRDHLETAQSSARSLLSIINDILDFSKLEAGQMKMESTRFDLYRLMEEMGALLKGAAMDK 242 Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + +++ I+ D RL QI + ++ NA+ F+ +G +L A + F V Sbjct: 243 GLDLRLHIAANVPRHHCGDSNRLRQILTNLMGNAVKFTERGGVEVLVEALPDSRLRFQVA 302 Query: 725 NNGSSIPEDMCKSVFNRFV 743 ++G I +F+ FV Sbjct: 303 DSGIGIDPAAASGLFSEFV 321 >gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus MB-451] gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio mimicus MB-451] Length = 1163 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ Q LT N +T+ E AL + +A E +N F+ VS+ELR+P+ ++G Sbjct: 600 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 659 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + + S +SQ + + +S L + VNDILD + ++A ++L+ +T L D Sbjct: 660 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 715 Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L + +S + V D +L V D RL QI + +LSNA+ F+ KGS Sbjct: 716 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 774 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 I + F F V + G + E S+F FV RR G GLG+SIV + + Sbjct: 775 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 833 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L GGH+ + S + TT+ +P Sbjct: 834 ELMGGHIHVESEIDQGTTVRVSLP 857 >gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1349 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 15/238 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A K F+ ++S+E+R+P+ +IG T LL ++L ++Q Y + Sbjct: 770 LNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTEL---TTEQRDYAGTVR 826 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+NDILD + V+AG + + S L + EV + +A K+ N ++ ++ Sbjct: 827 RSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIE--NRKLDLVLQ 884 Query: 675 GKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIF--SVKNNG 727 +G+ FV D R+ Q+ + ++ NA+ F+ +GS VI + ++D + ++ + G Sbjct: 885 YPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEVVCESQDEARAVMRVAIHDTG 944 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 IP + S+F +F R+ G GLGL+I + ++L GG +++SS EG T Sbjct: 945 PGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGST 1002 >gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 700 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V A R L E A+ K+ F+ VS+ELR+PL I+G DLL ++ L+ Sbjct: 153 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 209 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE S LL LV+ ILD + ++AG + L + L+ V + +A + Sbjct: 210 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 269 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD-F 719 + + I + I+D V D R+ QI + NA+ F+ G + ++ + G+ Sbjct: 270 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEEQGEGL 329 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + +V++ G IPE+ +F F G GLGL+I + G + S+ Sbjct: 330 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTMG 389 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 390 RGSTFRVMLP 399 >gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 455 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 132/250 (52%), Gaps = 11/250 (4%) Query: 547 DSVRAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 DSV++ R+L EK E + A+ K+ F+ +++ELR+PL +I G L+ + +G + Sbjct: 200 DSVQSRRSLREKERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEVP 259 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KM 662 + + + + L+ LVND+LD+ AG M+ ++ I DL + + IAT + Sbjct: 260 ERFRRMLSLAERNCNHLIQLVNDLLDVEKFSAGKMEFHFKNI---DLKSFLTAEIATNQT 316 Query: 663 HENNIRIKV-ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 NN + + + G V D +RL Q+ S +LSNA FS ST+++ + + Sbjct: 317 FANNFGVTIEAAPMPEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAV 376 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV+++G IP + +F F V +++ +R G GLGLSIV+S ++ H G + + S Sbjct: 377 ISVQDSGRGIPREKQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEP 436 Query: 779 EGVTTINCRI 788 TT ++ Sbjct: 437 GRGTTFYIKL 446 >gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 664 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 14/241 (5%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 T +NEA A K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I Sbjct: 273 TARNEAESMA-RFKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPTYKGLSVI 327 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKV 671 ++S+ L++D+LDL+++ G ++L ++ L + ++E Q +A + + + + V Sbjct: 328 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHV 387 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 L + D RL Q+ +LSNA+ F+ + + RD+G + SV+++G I Sbjct: 388 PDTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIA 445 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R+ Sbjct: 446 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 505 Query: 789 P 789 P Sbjct: 506 P 506 >gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 948 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 948 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] Length = 590 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+K ++++ FV +VS+EL++P+T+I GF++ L + +Q Q++ I S + Sbjct: 356 LKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQ-QFLSIILTESQRME 414 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L+ D+LDL+ V+ KL+ ++ LN LL EV ++ + E I + + + + Sbjct: 415 SLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWID 474 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D QRL+Q+F ++ NA+ ++ G TV + + V++ G I D +F R Sbjct: 475 GDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEISRIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 F V A G GLGL+IV+ + H G + + S TT + ++ Sbjct: 535 FYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKL 583 >gi|291545358|emb|CBL18466.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 469 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L K E + F+ +VS++ RSPLT+I G+ + + + Q +Y++ I+ ST Sbjct: 237 DKLNKNGEYQRQFISNVSHDFRSPLTSIKGYVEAMLDGTIPP--EMQERYLKVIAFESTR 294 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L +L L +D ++ +N+ + + E NIR++++ GK Sbjct: 295 LEKLTRSLLTLNELDVKKRMMHMRRFDINETIRTTAATFEGTCSERNIRLELLLAGKELF 354 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +++ Q+ +L NA+ FSS S++ L+ ++G SVK++GS IP++ ++ Sbjct: 355 VRADMEQIQQVLYNLLDNAVKFSSDNSSITLETTVNHGKVFVSVKDHGSGIPKESLSRIW 414 Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS 777 +RF +A RG+ R+G GLGL+IV+ IN H ++++ S+ Sbjct: 415 DRFYKIDASRGKDRKGTGLGLAIVKEIINAHKQNINVIST 454 >gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter sakazakii ATCC BAA-894] gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894] Length = 973 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 464 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 523 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V + SS++LL +++DILD + +++ +K+ ++++ + + Sbjct: 524 ELP---KGVDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 580 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S + D RL Q+ S +LSNA+ F+ G ++ + Sbjct: 581 YQPLVVRKQLGLYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDIGCIILHVGTQ-- 638 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ F V++ G IP +F+ F QR +G GLGL+I E IN+ G +S Sbjct: 639 GDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 698 Query: 774 ISSSDEGVTTINCRIP 789 + + + RIP Sbjct: 699 VDTEPGMGSQFTIRIP 714 >gi|294874815|ref|XP_002767112.1| Drug sensory protein A, putative [Perkinsus marinus ATCC 50983] gi|239868540|gb|EEQ99829.1| Drug sensory protein A, putative [Perkinsus marinus ATCC 50983] Length = 371 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ V++ELR+PL +IG ++ L+ ++ N + ++++ I+ + LL LVN+I+ Sbjct: 147 KDSFMATVNHELRTPLNGVIGLSESLRMTEP---NPGRKKHLDIINNCAVRLLALVNEIM 203 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVISDGKLGSFV 681 D+A + A M+LN+ + +N++ +V + K+ ++ + + I D Sbjct: 204 DIAALKAKKMQLNFGMVNVNEICEQVCGEMMEAVDKRGRKIKKDKVDLDFIPDPACPEVE 263 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D++RL + S +++NA F+SKGS ++ + G + + + G I +D K +F Sbjct: 264 GDKERLHYVMSAMVNNACKFTSKGSVKVITKGKARG-VLIKIVDTGIGIADDNVKRIFTE 322 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 F + R G+GLGLS+ INLHGG + Sbjct: 323 FEQEDDDHENRKFEGLGLGLSVSNEVINLHGGRL 356 >gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|42519761|ref|NP_965691.1| two-component system histidine kinase [Lactobacillus johnsonii NCC 533] gi|41584051|gb|AAS09657.1| two-component system histidine kinase [Lactobacillus johnsonii NCC 533] Length = 385 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI VI+ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLTPLHVNSMLEQVAAGFELEAEKKNITFNVITRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N +F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG++ S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTAE-LTSFIIQLP 374 >gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163] gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163] Length = 466 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 11/247 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + + R + E E L + +I+ F + S+EL++P+T+I G+ +LL++ +LN + + Sbjct: 221 TTKMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETT 278 Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +++ I + + +LV+DIL ++ +++ K TI + DLL E S+AT+ E Sbjct: 279 HDFLKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERG 338 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 V+ + SF AD +++ ++ ++ NA+ +++ + ++A R+N DF+ +V+ Sbjct: 339 ----VVIHKQFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLAVR 394 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G IP++ +F RF V ++ G GLGL+IV+ +N + G V + S + Sbjct: 395 DSGVGIPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGS 454 Query: 783 TINCRIP 789 T R+P Sbjct: 455 TFTVRLP 461 >gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 961 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] Length = 683 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ E+ L E E +A+ K+ F+ +S+ELR+PL I+G + +LKT +L+ Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++ IS + LL L+ND+LD A ++AG + T+ L++L+ ++K + H Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + I++K + S V D +R+ Q+ +LSNA+ F+ KG + LK Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G + + S+FNRF +++ ++ + GVGLGLSIV+ + GG +S++ Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTI 517 Query: 777 SDEGVTTINCRIP 789 + C IP Sbjct: 518 EPGVGSEFTCIIP 530 >gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 781 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 549 VRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +RA+R+L A +A + +K+ + VS+ELR+PL I G+ ++L+ S +L Sbjct: 384 LRAQRSLRGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDSAL--- 440 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q ++ I S+ L +V DILD +++ G ++L+ + + L ++ + T Sbjct: 441 QQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASSA 500 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 I ++ D +RL Q+ S ++SNA+ F+ G +V + ARD+ + +V + Sbjct: 501 GIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLARDDVRVVLTVSD 560 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I VF+ F ++ RRG+GLGLSIV LHGG V++ S+ Sbjct: 561 TGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTVKSA 614 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + + +A++ K +F+ +S+E+R+P+ +IG T LL ++L + +Q + I S Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQL---DPEQRHFATTIRDS 402 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL ++NDILD + ++AG + L + L L+ + +A + H I I + D Sbjct: 403 AESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPD 462 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSS 729 L ++V D RL QI + NA+ F+S G I RD G F V++ G Sbjct: 463 LPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISI--EVRDETSPDGAGRLRFDVRDTGIG 520 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP+D +F+ F+ RR G GLGL+I + + GG + + S+ Sbjct: 521 IPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVEST 570 >gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 622 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L + Y+ Sbjct: 382 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E + + Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 D F DR RL QI +L+NA+ + KG I F V + G Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTIEAEEKMIKFYVSDTGCG 555 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGLGL+I + + GG++S+ S + +T +P Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 Query: 790 SK 791 K Sbjct: 614 MK 615 >gi|268320125|ref|YP_003293781.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|262398500|emb|CAX67514.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] Length = 385 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N +F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG++ S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTSE-LTSFIIQLP 374 >gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|308067410|ref|YP_003869015.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305856689|gb|ADM68477.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 589 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E E ++ + ++ F + S+EL++PL+ I GF + L+ G KQ Y+ Sbjct: 353 ANQQLVEDMEQKQRMEAVQQDFFANASHELKTPLSIIKGFAEGLQD---GVSAGKQDHYM 409 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + + LV D+LDLA +++G +KL +T +L++L+ EV + + E + + Sbjct: 410 KVIVEEADKMERLVKDMLDLAKLESGTLKLRKTTFILSELVEEVVDKLFHLLKEKKLEVV 469 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +I ++ AD + Q+ NA+ + +GS++ ++ FS++N G +I Sbjct: 470 IIPANEM-PIHADVGWMEQVIINFFVNAIRHAEEGSSITIRIEGAGEISFFSIENKGETI 528 Query: 731 PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 P+D + +++RF + Q G GLGLSIV+ ++LH + ++ +GV Sbjct: 529 PDDQLEQIWDRFYRAELSRSRQTGGTGLGLSIVKRILDLHEFRYKVENTKDGV 581 >gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 597 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 167/354 (47%), Gaps = 32/354 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ G +A + +L Sbjct: 266 MADGVITFNRDGEILITNPPAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------EL 314 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 FA ++ +++ +S + TL+ + +L + PL +TM V +V R +TE+ Sbjct: 315 FARVVR--EEKEQSTEVTLQGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE- 362 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P+ + G+++ + + + ++ + + I S Sbjct: 363 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLR 418 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+LDLA ++AG ++L Y + L + V + E I + + Sbjct: 419 MGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIE 478 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ + G TV L V+++GS IPE+ VF Sbjct: 479 IAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVF 538 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF A R G GLGL+I ++ + H G +++ S TT + +P++ Sbjct: 539 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592 >gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira platensis NIES-39] Length = 730 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A A + K+ F+ +S+E+R+P++ ++G +LL + L +Q Y + I Sbjct: 50 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTQTIY 106 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++N+ILDL+ ++AG L L D L V ++ K + + + ++ + Sbjct: 107 RSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLE 166 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729 + ++ D RL Q+ +++NA+ F+ G +I R D + FS+++ G Sbjct: 167 PNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRFINQDQINIYFSIEDTGLG 226 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I +++ +F F S+A Q G GLGLSI + +NL GG + ++S + Sbjct: 227 ISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQE 277 >gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 885 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/407 (23%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 444 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G + +L + L + + ++T+ +R L E Sbjct: 445 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 504 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 620 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 679 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S++S TT +P Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724 >gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 932 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 17/279 (6%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRK 564 SFDDE L+ +E +++ + +F N + +AE + + K Sbjct: 281 SFDDEE------FRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ +IIG+ LLK S L+ KQ +YVE I ++ LL ++ Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNS---VLSPKQREYVENIGLAAKNLLAII 391 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 N ILD + ++AG M L ++D+LNE+ + + I +++ D + F+ D Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ ++SN + F+ +G I ++ +N FSV + G I ++ K +F Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R+ G GLGL+I + + L G +++ S Sbjct: 512 QVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVES 550 >gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS] gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS] Length = 823 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 22/234 (9%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 RA A+ EK + L A + K+ F+ ++S+ELR+PL +++ + LL +K +L KQ + Sbjct: 114 ARARAAIEEKAQELELASKYKSEFLANMSHELRTPLNSLLILSQLLADNKTNNLTDKQVE 173 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 YV I +S + LL L+N+ILDL+ V+AG +++ + L DL+ VKQ E + Sbjct: 174 YVRTIHSSGSDLLTLINEILDLSKVEAGKIEIRSEDVSLTDLVATVKQKFQHLATEKGLA 233 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI--- 720 +V I+ D QRL QI + +LSNA F+++G + + ++ D + Sbjct: 234 FQVQIAQDVPTVLHTDEQRLKQIINNLLSNAFKFTTQGEVRLDIESFASHQEGKDVLPLG 293 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 S+ + G IP+D + +F F RR G GLGLSI Sbjct: 294 EDLREGYQKFITISITDTGIGIPKDKQQIIFEAFQQADGSTSRRFGGTGLGLSI 347 >gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 894 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 16/237 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L K+ + K+ F+ ++S+ELR+PL +++ + +L +K G+L ++ Y I S + LL Sbjct: 490 LEKSSKYKSQFLANMSHELRTPLNSMLILSQILSENKQGNLTEEEQHYASVIHNSGSELL 549 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 NL+NDILDL+ V+AG +++ + L +L ++ + N+ ++ +++ Sbjct: 550 NLINDILDLSKVEAGKLQIEMDLVNLTELPEVMEGYFSKSAESKNLEFEIEMAEDLPDMM 609 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI-------FSVKNNGSS 729 +D RL QI +LSNA+ F+ GS V L + N DFI FSV++ G Sbjct: 610 YSDGMRLHQILRNLLSNAIKFTESGS-VKLSVKKMNSIVTSDFIISGEVIAFSVEDTGIG 668 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 I + + +F F RR G GLGLSI L GG++++ S+EG +I Sbjct: 669 IAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITV-ESEEGSGSI 724 >gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1287 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T RAE L E E A ++K+ F+ ++S+E+R+PL ++GFTDLL + +L+ Sbjct: 749 DITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLLMKT---NLD 805 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q QY+ + S+ L++++NDILD + ++AG ++L L ++ V + + Sbjct: 806 ETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQAQ 865 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNG 717 + ++ + + + FV D RL QI +LSNA+ F+ KG ++ K + + Sbjct: 866 QKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIKGEIELKIELLNKVSGLDY 925 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F FSV++ G I + +F F +R G GLGL+I S + L + ++ Sbjct: 926 TFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSLLGLMESRLQLT 985 Query: 776 SSDEGVTT 783 S E +T Sbjct: 986 SELEKGST 993 >gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 13/245 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-L 602 ++ + + E L EA A K+ F+ ++S+E+R+PL +IG T +L LG+ L Sbjct: 396 DILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGIL----LGTDL 451 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q ++E I +S LL ++NDILD + +D+G M+L + + + +A Sbjct: 452 NREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVA 511 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 E + + I + + V+D RL QI IL NA+ F+S G IL + RD G Sbjct: 512 QEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGREH 571 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F+V + G IP + +F F RR G GLGL+I + + L G + + Sbjct: 572 EIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIW-A 630 Query: 776 SSDEG 780 S+EG Sbjct: 631 ESEEG 635 >gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608 R L EK + + + D ++ V VS+ELR+PLT I GF + L G + SK+ + Sbjct: 216 RMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHD---GIVKSKEQEK 272 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+ I + L +LVNDIL L +++ G M+ +VLN L+N + + Sbjct: 273 FYLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVERMKQIASAKKT 331 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +K I+ + + + RL Q+ + ++ NA+ S G V ++ G +VK+NG Sbjct: 332 IVKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLREGFAFIAVKDNG 391 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP++ ++++ RF RRG GLGLSIV + +HGG V++ S T Sbjct: 392 PGIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFT 451 Query: 786 CRIPSKE 792 +P E Sbjct: 452 VFLPLSE 458 >gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1148 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D A R + E L +A K+ F+ ++S+ELR+PL +I+ D L L+++ Sbjct: 494 DLAAARRDAERQVEELAEASRYKSQFLANMSHELRTPLNSILILADTLADDD--ELDAEH 551 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ + I S LL L+NDILDL+ ++AG ++L ++ ++D L + ++ A Sbjct: 552 TESAKVIGESGHHLLALINDILDLSKIEAGRLELVEESVRIDDALASIARTFAAPADRKG 611 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + + V + G AD +RL+Q+ ++ NA+ F+ +G + + D G FSV + Sbjct: 612 VALTVETAPGAPSVIRADGRRLIQVLLNLVGNAVKFTDRGEVRVTASPMDGG-VRFSVSD 670 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + +SVF F RR G GLGL+I + L GG + + S Sbjct: 671 TGVGIAPNQIESVFTAFQQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQS 723 >gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] Length = 1072 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 9/249 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A + + +VT+ +AE AL +A K+ F+ +S+E+R+PL I G+ LL Sbjct: 552 AGVVASMRDVTERKQAEIALVRAQAEAEQASAAKSDFLATMSHEIRTPLNGIAGYAGLLM 611 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L ++ ++VE I +S +L +V+D+LD + ++AG ++L +T L L+++V Sbjct: 612 TED--GLPARSRRHVERIQTASQVLKTVVDDVLDFSKIEAGRVELVPTTFGLARLVDDVV 669 Query: 656 QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VIL 710 + + + ++ I+ G++V D RL QI +L+NA+ F+ GS V L Sbjct: 670 AIVRGGVPADGPHVEGEIAPSLDGAYVGDENRLRQILLNLLNNAVKFTPAGSVDLRIVDL 729 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + FSV++ G I + K +F +F RR G GLGL+I + + L Sbjct: 730 GLEAGSRRLRFSVRDTGIGISPEQQKLLFRKFSQIDASNVRRYGGTGLGLAISQRLVGLM 789 Query: 769 GGHVSISSS 777 GG + +SSS Sbjct: 790 GGAIEVSSS 798 >gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPNVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 662 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 11/215 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ ++S+E+R+PL IIGFTDLL +K LN+ Q Y+ + + LL +VNDIL Sbjct: 183 KDSFLANMSHEIRTPLNAIIGFTDLLAQTK---LNAVQRDYINSVQIAGENLLLIVNDIL 239 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ +++G + + L + L V + K+ + + + D + V D RL Sbjct: 240 DLSKMESGNLTIEAVPFNLKNTLKHVYNLLKIKVPK-EVEFNLFLDADMPEMVIGDEGRL 298 Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 QI ++ NA+ F+ +G S +++ + FSVK+ G IP K++F RF Sbjct: 299 NQILVNLIGNALKFTHEGEVTVSVKMIEETETHYSLKFSVKDTGIGIPPKKLKTIFERFT 358 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGL+IV+ I L +++ S Sbjct: 359 QAEDSTTRKFGGTGLGLNIVKQLIELQNAEINVKS 393 >gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1294 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VTD + AER +L + E +A+ K+ F+ +S+++R+P+ I+G T L Sbjct: 879 LVRADVTDMLAAERQTKRSLEKALELAEEANRAKSEFLSAMSHDIRTPMNAIMGMT-ALA 937 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + + K S ++ IS SS LL+L+ND+LD++ ++ + L I+L+ L++++ Sbjct: 938 CAHIDD-QDKVSDCLKKISISSKHLLSLINDVLDMSKIERSQITLGRMKILLSRLMHDLA 996 Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----- 709 I + I V +D F D RL QIF ILSNA+ F+ +G TV Sbjct: 997 AIIEPQARAAGIHFYVRTDDICNEKFYGDVLRLNQIFINILSNAIKFTPEGGTVDFMVEE 1056 Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 L A R D+ + F++++ G I + + +F F +++ + G GLGLSI + ++L Sbjct: 1057 LPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIFEPFTRSSNTSRVEGTGLGLSITKGLVDL 1116 Query: 768 HGGHVSISSSD 778 GG +++ S + Sbjct: 1117 MGGVITVESKE 1127 >gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 589 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 177/355 (49%), Gaps = 34/355 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV DG I ++NP F W E+N + G ++ + + Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 LF +++ ++ + ++ TL+ S +L + PL A++ +V +V R +TE+ Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+ D+++ F+ +VS+ELR+P++ + G+++ + + S + + + I S Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LVND+LDLA +++G L+Y I +N+ L ++ + + E NI ++ Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISLTEE 473 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 F+ D ++ Q+F+ ++ NA+ +S G +V + +K++GS IPE+ + Sbjct: 474 EFMLDEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF A R G GLGL+IV++ + H G +++ S + TT IP+K Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588 >gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 660 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N + + Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G+ IPED + VF RF Q G GLGL+I + I GG + I S Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639 >gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1356 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++TD R E L + E K+ K F ++S+E+R+P+ I+G + L S +L Sbjct: 835 LDITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVGMGEQLAKS---AL 891 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q++Y++ I S++ L+ ++ DILDL+ ++AG M + +++ + + K Sbjct: 892 NDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPKNIIEHTFEMMKAKA 951 Query: 663 HENNIRIKVIS-DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 + +++ D ++ + D R+ QI +LSNA+ F+ KG V+ + + Sbjct: 952 ESKGLDYSILNYDSRINEVLIGDPIRISQILLNLLSNAIKFTEKGKVVLQCHSISETESH 1011 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + FSV + G + +D S F ++V R+ G GLGLSI + + L GG + I Sbjct: 1012 QEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLSISKELVQLMGGQMKI 1071 Query: 775 SSSDEGVTTI---NCRIP 789 S +G+ TI N ++P Sbjct: 1072 ESQ-KGLGTIVSVNFKLP 1088 >gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 957 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 9/236 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------KTSKLGSLNSKQSQYVEYISA 615 R+ +++KN FV VS+ELR+PL + G LL K+ + ++S + ++ Sbjct: 469 REVEQMKNEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIRDMSSVERDLLQRALT 528 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 ++ LL LVND+LD+A ++ G ++L + ++ +A+ + + I + Sbjct: 529 NTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLASFARQQQVTISLDVPP 588 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 L DR R++Q+ +LSNA+ FS G V++ A + G FSV++ G I Sbjct: 589 NLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAHEQGMVRFSVRDWGPGISRADQ 648 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F + + R G GLGL+I + LHGG + + S +T + +P Sbjct: 649 LKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGRIWVDSDVGFGSTFSFTVP 704 >gi|225027308|ref|ZP_03716500.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353] gi|224955370|gb|EEG36579.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353] Length = 943 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A KA K +F+ H+S+++R+P+ I+GFT + + + + + +E I Sbjct: 556 LAEHAQATNKA---KTAFLSHMSHDMRTPMNAIMGFTSI---AMKNNPSDEVKNCLEKID 609 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673 SS LL+L+ND+LDL V++G +K N L + + + +I K+ Sbjct: 610 ESSEYLLSLINDVLDLTRVESGKVKYNPVPADLKSITDSALDITKGFLTNRDISFKIQRE 669 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD-FI---FSVKNNG 727 + K+ + + D RL + ILSNA+ F+ G T+ +A GD +I + + + G Sbjct: 670 EAKIPNVLVDPVRLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMHYRISDTG 729 Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E+ K VF +F R Q GVGLG++IV+ ++++ GG +S+ S TT Sbjct: 730 IGMSEEFTKEVFEKFAQEDSDVRTQYHGVGLGMAIVKKYVDMVGGTISVQSKKHEGTTFT 789 Query: 786 CRIP 789 IP Sbjct: 790 VDIP 793 >gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1056 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 10/247 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E AD +K++F+ +S+ELR+PL +IIGF+ ++ G LN +Q + + Sbjct: 802 EAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPLNKEQKKQMG 861 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S+ LL L+ND+LD++ ++A + L + +N V QS+ + + +++ Sbjct: 862 MVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLELEL 921 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725 D D++R+ Q+ +++NA+ F+ KGS +L + N + + +++ Sbjct: 922 KQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQIQD 981 Query: 726 NGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I P D K +F F + + G GLGLSI + + L GG +++ S + Sbjct: 982 TGIGIQPGDFSK-LFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHGS 1040 Query: 783 TINCRIP 789 R+P Sbjct: 1041 RFTVRLP 1047 >gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 624 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 6/210 (2%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ ++S+E+R+PL ++G LL L LN +Q ++V+ I +S LL+++ DILD Sbjct: 243 SQFLANMSHEIRTPLNGVLGIAQLLA---LTDLNDRQKEFVQTIRSSGRALLSIIEDILD 299 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLL 688 L+ ++AG +KL + +D++ E Q+ A + +++ +L + D R+ Sbjct: 300 LSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVR 359 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI S +L NA+ F+ G + + G V + G + E + K VF RF + Sbjct: 360 QILSNLLGNAIKFTETGEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQADMS 419 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 H G GLGL+I + L GG + + S Sbjct: 420 HSRSHEGSGLGLAIARELVVLMGGQIGVHS 449 >gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N++ + Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ IPED + VF RF Q G GLGL+I + I GG + I Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636 >gi|293572384|ref|ZP_06683366.1| sensor histidine kinase [Enterococcus faecium E980] gi|291607544|gb|EFF36884.1| sensor histidine kinase [Enterococcus faecium E980] Length = 402 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618 RK ++ K+ + +VS+++R+PLT+IIG+ L++ G +S++ + YI A Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + +LV+D+ + V + +N+S + L+ ++ + + NI+I V S K+ Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270 Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 S + D ++L+++F+ +L+NA+ + + ++++ R + + +VKNNG+ IP+ Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERVGSEVVATVKNNGAMIPQQAID 330 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++F+RF V + G GLGL+I +S + LHGG++ + SD+ T+ +P K+ Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387 >gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 1128 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++NE L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ I Sbjct: 446 IQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLV+D+LD + G M + S + L V + + + IRI Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVP 565 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L + AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP + Sbjct: 566 ADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPAEQ 624 Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 625 LEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|46204504|ref|ZP_00049895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 349 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 4/219 (1%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVD 634 +S+ELR+PL I+GF++++K G + +Y I S LLNL+N+ILDL+ ++ Sbjct: 1 MSHELRTPLNAILGFSEVMKNEVFGVHTAPAYREYANDIHDSGMHLLNLINEILDLSRIE 60 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694 AG L + L + E + + + + D L AD + L QI + Sbjct: 61 AGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFTSLIDDSLPRLWADERALRQIVLNL 120 Query: 695 LSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 LSNA+ F+ G + +K +G SVK++G IPED +V + F S A + Sbjct: 121 LSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRGSLAIKTAE 180 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +G GLGL IV+ ++LHGG + S T + P+ Sbjct: 181 QGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPA 219 >gi|301163195|emb|CBW22745.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis 638R] Length = 511 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N D +RA R N+A +++D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y IS + LL LV+D+LDL+ +++ M ++ L LL E+ Q ++ Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722 + ++ ++ D RL Q+ +L NA F+ KG I A D+G+ I+ Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP D K VF RF Q G GLGLS+ ++ + GG +++ S Sbjct: 441 VADTGCGIPSDQYKKVFERFYKIDSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492 >gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 513 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 4 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 63 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 64 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 120 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 121 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 178 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 179 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 238 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 239 VDSEPGMGSQFTLRIP 254 >gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 948 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1] gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains [Aromatoleum aromaticum EbN1] Length = 1205 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + L + K+ F+ ++S+ELR+PL +++ + LL +K G+L+ KQ ++ I ++ Sbjct: 525 KAQELERVSAYKSQFLANMSHELRTPLNSLMILSSLLMQNKDGNLSEKQVEFASTIHSAG 584 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 T LL+L+NDILDL+ ++AG ++L+++ I + DL ++ ++ + I V + + Sbjct: 585 TDLLDLINDILDLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEADV 644 Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN----GDFIFSVKNNGSS 729 +F D QR+ QI ++SNA+ F+ G V + N F+V + G Sbjct: 645 PRTFHGDTQRVHQILKNLVSNALKFTEHGEVRLCVTFPSGSANPLPVPAIAFAVSDTGIG 704 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 IP D + +F+ F R+ G GLGLSI G + +SSS+ Sbjct: 705 IPADKQQGIFDAFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSE 755 >gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46] gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46] Length = 511 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N D +RA R N+A +++D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y IS + LL LV+D+LDL+ +++ M ++ L LL E+ Q ++ Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722 + ++ ++ D RL Q+ +L NA F+ KG I A D+G+ I+ Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP D K VF RF Q G GLGLS+ ++ + GG +++ S Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492 >gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 686 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 164/353 (46%), Gaps = 25/353 (7%) Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAA-TCSRYYNESDGWDLFAA 502 EG+ GR+ NPA + E + L H R T Y SD L+A+ Sbjct: 195 EGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAYRMSD-IPLYAS 253 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTM---LTFVNVTDSVRAERALTEK 558 +I + S+ S +EY P L QT+ +TF ++T+ ER Sbjct: 254 LIDASVHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDITERQAVER----- 308 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +K FV VS+ELR+PLT+I G LL LG L+ K + ++ A++ Sbjct: 309 ---------LKAEFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIANTD 359 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L+ L+NDILD+ +++G + L L +LL + + + + + + + + K Sbjct: 360 RLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVML--LCESKSA 417 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD RL+Q F+ ++SNA+ FS GSTV + AA D V + G IP + +S+ Sbjct: 418 PLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQVQVRVVDQGRGIPAEKLESI 477 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F RF V + ++ G GLGL+I S + HGG + S+ +T +P Sbjct: 478 FERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTLP 530 >gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 466 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 11/247 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + + R + E E L + +I+ F + S+EL++P+T+I G+ +LL++ +LN + + Sbjct: 221 TTKMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETT 278 Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +++ I + + +LV+DIL ++ +++ K TI + DLL E S+AT+ E Sbjct: 279 HDFLKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERG 338 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 V+ + SF AD +++ ++ ++ NA+ +++ + ++A R+N DF+ +V+ Sbjct: 339 ----VVIHKQFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLTVR 394 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G IP++ +F RF V ++ G GLGL+IV+ +N + G V + S + Sbjct: 395 DSGVGIPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGS 454 Query: 783 TINCRIP 789 T R+P Sbjct: 455 TFTVRLP 461 >gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 915 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 522 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 641 VDSEPGMGSQFTLRIP 656 >gi|260431941|ref|ZP_05785912.1| PAS domain containing protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415769|gb|EEX09028.1| PAS domain containing protein [Silicibacter lacuscaerulensis ITI-1157] Length = 502 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 136/290 (46%), Gaps = 15/290 (5%) Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255 ++ D + VW + +G + W N +Y + +KA G L + + + Sbjct: 142 RLAMDKAPYPVWLLNHSGRVSWCNAAYIS-------LVRKARGPDTDL-TQPLFPELPDD 193 Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI---TVNDQLTHTY-EI 311 S K ++ N + + V G A+DV+ + T + T + Sbjct: 194 SRPGKKTRIAAPVKDNSNKLWFDLTHVELDEGLLHYAVDVNAIVEAETAQRKFVQTMTKT 253 Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371 L++ +AIFD+NR L N + ++L + FL+ PS + LR + +PE N+ Sbjct: 254 FAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLSCRPSISSFFDRLRDQHMMPEPKNY 313 Query: 372 KTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429 ++W+ + + +++E +++TW LP+G V +P G ++FE++T ++ L ++ Sbjct: 314 RSWRNQMNDLLEAAEDGNYQETWSLPSGSVYSVSGRPHPDGAVAFLFEDITAEITLTRRF 373 Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-KTEENRLSPGT 478 + + +D L++ +AVF DG + +N A+R +W ++E + P T Sbjct: 374 RAEMDLMQSILDKLADAIAVFADDGTLAFTNYAYRVMWGGSDEVGIEPST 423 >gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter turicensis z3032] gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032] Length = 703 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 194 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 253 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V + SS++LL +++DILD + +++ +K+ +L++ + + Sbjct: 254 ELP---KGVDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITAN 310 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + + D RL Q+ S +LSNA+ F+ G ++ + Sbjct: 311 YQPLVVRKQLGLYCFIEPDVPMTLLGDPMRLQQVISNLLSNAIKFTDIGCIILHVGTQ-- 368 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ F V++ G IP +F+ F QR +G GLGL+I E IN+ G +S Sbjct: 369 GDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 428 Query: 774 ISSSDEGVTTINCRIP 789 + + + RIP Sbjct: 429 VDTETGMGSQFTIRIP 444 >gi|77465233|ref|YP_354736.1| Cache sensor signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389651|gb|ABA80835.1| Cache sensor signal transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 699 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + L A+ K+SF+ +S+ELR+PLT IIG+ +LL+ S+ L+ ++ Q V+ IS Sbjct: 452 LATMGDKLDAANRAKSSFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673 + L+ LV+ +L+L+ ++ ++L S++ L L+ E + +++I+ Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 + L S V+D L +I ++LSNA+ ++ G V + + D + S+++ G IP Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631 Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D VF F H G G G+G++I + + G +S+ S+ T RIP Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689 >gi|126464695|ref|YP_001045808.1| multi-sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126106506|gb|ABN79036.1| Cache sensor signal transduction histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 699 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + L A+ K+SF+ +S+ELR+PLT IIG+ +LL+ S+ L+ ++ Q V+ IS Sbjct: 452 LATMGDKLDAANRAKSSFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673 + L+ LV+ +L+L+ ++ ++L S++ L L+ E + +++I+ Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 + L S V+D L +I ++LSNA+ ++ G V + + D + S+++ G IP Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631 Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D VF F H G G G+G++I + + G +S+ S+ T RIP Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689 >gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 766 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 148/286 (51%), Gaps = 21/286 (7%) Query: 509 DERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566 + ++ L+ T+ LS S +LE +T L+ N V ERA T A+ Sbjct: 496 ESKRRLKATINDLSTSRQILE-------RQKTELSIANAKYQVEKERAET--------AN 540 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625 + K+ F+ +S+ELR+PL I+GF++++K G L S K +Y + I S LLN++N Sbjct: 541 KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +IL+++ ++ + ++ L ++NE + I + NI+I+ +L F AD++ Sbjct: 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKR 659 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 + +I ILSN++ F++ ++++ ++ I ++ + G IP+ + + F + Sbjct: 660 IIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPL 719 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N + G GLGL+I ++ NLHGG + I S + T + +P Sbjct: 720 HNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765 >gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 915 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 522 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 641 VDSEPGMGSQFTLRIP 656 >gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1121 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 16/234 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 +E A A+E K++F+ +S+E+R+P+ +IG T+LL + LN +Q ++ E I Sbjct: 471 SEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDT---PLNEEQREFCETIRG 527 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S LL ++NDILD + ++AG M+L + L + L I T + + + D Sbjct: 528 SGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVDK 587 Query: 676 KLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------FIFSVK 724 ++ + +A D RL QI +L+NA+ F+ +G + D D FSV Sbjct: 588 QVPATIAGDVTRLRQILLNLLNNAVKFTEQGEISLTVRGEDGPDAAALPPGSMLLRFSVA 647 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++G IP D +F F R+ G GLGL+I + + GG + + S Sbjct: 648 DSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVES 701 >gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1142 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+ELR+PLT ++G+T +L+T + + + Q + ++ I ++ L L+ Sbjct: 760 ANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRR--NDPAIQEKGLDVIERNARSLAQLI 817 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 D+LD++ + G + L+ + L ++ + + + + + + V+ G G V D Sbjct: 818 EDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTL-VMEAGVGGGMVTGD 876 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL Q+F +L NA+ F+ G V ++ R N ++ +K++G I + +F RF Sbjct: 877 PGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFW 936 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789 + + G+GLGL+IV + LHGG V S+ G +T R+P Sbjct: 937 QADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 985 >gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain protein) [Synechococcus sp. PCC 7002] Length = 1427 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 10/264 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P Q + +T RA+R L + R+ + +K F+ S+E R+PLT I+G + Sbjct: 1161 PQYQVLGVASEITQQRRAKRELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQI 1220 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLND 649 L +++SQY+ I S L L++D+L ++ ++AG + + + D Sbjct: 1221 LSAYHDHLPEARRSQYLNNIEDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRD 1280 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ-IFSKILSNAMDFSSKGSTV 708 L+ E+K I + H N + + G + + +A LLQ I + +L NA +S+ G+TV Sbjct: 1281 LIAELKIGIGKQHHFN-----LETTGAIAAPLALDPNLLQHILNNLLGNACKYSAPGTTV 1335 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 ++ ++ + G IP + +F F ++ G GLGL+IV+ ++ LH Sbjct: 1336 TVQLGSSAEALTLTIIDQGVGIPPEDQPHIFESFYRASNTQNIPGTGLGLNIVKEYVQLH 1395 Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792 GG + ++S + IP E Sbjct: 1396 GGQIELTSQLSKGSQFTVTIPLTE 1419 >gi|69247504|ref|ZP_00604374.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Enterococcus faecium DO] gi|257878631|ref|ZP_05658284.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257881296|ref|ZP_05660949.1| histidine kinase [Enterococcus faecium 1,231,502] gi|257890513|ref|ZP_05670166.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257893089|ref|ZP_05672742.1| histidine kinase [Enterococcus faecium 1,231,408] gi|258615287|ref|ZP_05713057.1| sensor histidine kinase [Enterococcus faecium DO] gi|260558211|ref|ZP_05830407.1| hypothetical protein EFXG_00002 [Enterococcus faecium C68] gi|261206901|ref|ZP_05921590.1| hypothetical protein EFZG_00422 [Enterococcus faecium TC 6] gi|289567405|ref|ZP_06447771.1| sensor histidine kinase [Enterococcus faecium D344SRF] gi|293557180|ref|ZP_06675731.1| sensor histidine kinase [Enterococcus faecium E1039] gi|293563864|ref|ZP_06678295.1| sensor histidine kinase [Enterococcus faecium E1162] gi|293569176|ref|ZP_06680482.1| sensor histidine kinase [Enterococcus faecium E1071] gi|294619787|ref|ZP_06699183.1| sensor histidine kinase [Enterococcus faecium E1679] gi|294623742|ref|ZP_06702570.1| sensor histidine kinase [Enterococcus faecium U0317] gi|314940147|ref|ZP_07847327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133a04] gi|314943021|ref|ZP_07849825.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133C] gi|314948139|ref|ZP_07851535.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0082] gi|314953447|ref|ZP_07856365.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133A] gi|314993813|ref|ZP_07859150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133B] gi|314998161|ref|ZP_07863043.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133a01] gi|68194829|gb|EAN09304.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Enterococcus faecium DO] gi|257812859|gb|EEV41617.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257816954|gb|EEV44282.1| histidine kinase [Enterococcus faecium 1,231,502] gi|257826873|gb|EEV53499.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257829468|gb|EEV56075.1| histidine kinase [Enterococcus faecium 1,231,408] gi|260075385|gb|EEW63691.1| hypothetical protein EFXG_00002 [Enterococcus faecium C68] gi|260078529|gb|EEW66231.1| hypothetical protein EFZG_00422 [Enterococcus faecium TC 6] gi|289160801|gb|EFD08735.1| sensor histidine kinase [Enterococcus faecium D344SRF] gi|291588145|gb|EFF19987.1| sensor histidine kinase [Enterococcus faecium E1071] gi|291593971|gb|EFF25449.1| sensor histidine kinase [Enterococcus faecium E1679] gi|291596696|gb|EFF27919.1| sensor histidine kinase [Enterococcus faecium U0317] gi|291600661|gb|EFF30962.1| sensor histidine kinase [Enterococcus faecium E1039] gi|291604175|gb|EFF33678.1| sensor histidine kinase [Enterococcus faecium E1162] gi|313587873|gb|EFR66718.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133a01] gi|313591736|gb|EFR70581.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133B] gi|313594550|gb|EFR73395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133A] gi|313598221|gb|EFR77066.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133C] gi|313640652|gb|EFS05232.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0133a04] gi|313645393|gb|EFS09973.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecium TX0082] Length = 402 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618 RK ++ K+ + +VS+++R+PLT+IIG+ L++ G +S++ + YI A Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + +LV+D+ + V + +N+S + L+ ++ + + NI+I V S K+ Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270 Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 S + D ++L+++F+ +L+NA+ + + ++++ R + + +VKNNG+ IP+ Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERIGSEVVATVKNNGAMIPQQAID 330 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++F+RF V + G GLGL+I +S + LHGG++ + SD+ T+ +P K+ Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 13/229 (5%) Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + NE R+ADE K F+ ++S+E+R+P+ +IGFT++L+ + +L+ Q +V Sbjct: 156 AIIKANELARRADEANQAKTQFLANMSHEIRTPMNGVIGFTEMLEET---NLDEAQRDFV 212 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL L+ND+LD + ++AG LN +++EV + I ++ + ++I Sbjct: 213 ATIKRSGESLLTLINDVLDFSKIEAGEFTLNEVDFSPELIVHEVSELIRPRIGKKPVKIS 272 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKN 725 + G + S V D QR QI ++ NA F+ G I L + D + S+++ Sbjct: 273 SVISGNMPSRVKGDEQRFRQILINLMGNAQRFTDSGEIEIQLSIDEETSDQVLVHTSIRD 332 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 G I E K++F F + R+ G GLGLSI + N+ G V Sbjct: 333 TGIGIAERDLKTIFEPFRQSDGTSTRKYGGTGLGLSICKQLSNMMRGDV 381 >gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 807 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 13/246 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ EK AL + K++F+ +S+E+R+P+ I+G T + + SL +Q +Y+ Sbjct: 410 EKLKQEKELALAEV-RFKSAFLSTMSHEIRTPMNGILGMTQMFGQT---SLTDEQKEYLS 465 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL LVNDILDL ++AG +L TIVL+ LN++ Q +K++ + +++ Sbjct: 466 LIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDMVQLFRSKINTQYVNLEL 525 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725 +++ L + D++R QI S +L NA+ F+ G T+ L D D +K+ Sbjct: 526 VTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG-TISLIVWSDPIDSKKCKLNLQIKD 584 Query: 726 NGSSIPEDMCKSVFNRFVS-NAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP + +F F+ ++H G+ G GLGL+I + + G +S+ S + Sbjct: 585 TGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVEEMSGKISVLSELGKGSV 644 Query: 784 INCRIP 789 + IP Sbjct: 645 FHVEIP 650 >gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis NCTC 9343] gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis NCTC 9343] Length = 511 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N D +RA R N+A +++D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y IS + LL LV+D+LDL+ +++ M ++ L LL E+ Q ++ Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722 + ++ ++ D RL Q+ +L NA F+ KG I A D+G+ I+ Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP D K VF RF Q G GLGLS+ ++ + GG +++ S Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492 >gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L] gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L] Length = 1754 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 + I L NA T V R E+ + + E ++ E+K+ F+ S+E R+PLT I+ Sbjct: 1472 AAISLENATLYQTLHEVQVRERLEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIM 1531 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL- 647 G T++ K + K+ Y++ I + +L++++D+L + +AG +K N + + L Sbjct: 1532 GVTEIFKYYSQNWTDEKKQNYLDRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLL 1591 Query: 648 ---NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 DL+ +++ I T + +I + + +F D + L I +LSNA +S Sbjct: 1592 EFCRDLVEDIELGIDT---QQSIVFSIQCECPEVNF--DEKLLRHILINLLSNATKYSPN 1646 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 ST+ + IF +K+ G IPE+ K +F F + G G GLGL+IV+ Sbjct: 1647 DSTINFDLICQQEEVIFKIKDQGIGIPEEDQKQLFESFHRCNNVGNIPGTGLGLAIVKQS 1706 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + +HGG ++++S TT IP Sbjct: 1707 VEVHGGEITVNSQVGIGTTFTVTIP 1731 >gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] Length = 558 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 545 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|182413462|ref|YP_001818528.1| integral membrane sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177840676|gb|ACB74928.1| integral membrane sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 597 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 R D+ K + V VS+EL++PLT + LL ++G+L + Q + +E + LL Sbjct: 367 FRLLDDAKTNLVGTVSHELKTPLTGLRMAVYLLLEQQIGTLTAPQRELLEGARDDADRLL 426 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGS 679 +++++LDLA ++AG L I + +LL + R++V + + Sbjct: 427 RILDNLLDLARLEAGATALQRREIGIGELLAAITAEARGLFTAAGQRLEVQCAPEVEATR 486 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 D RL +F +L+NA FS +G+T+ L AA+ + F+ F+V + G IP D V Sbjct: 487 LHVDVDRLRHVFINLLANAAKFSPEGATIRLSAAKADPGFVRFAVHDEGPGIPADALTHV 546 Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778 F+RF GQ + G GLGL+I + HGG ++ S + Sbjct: 547 FDRFYRAP--GQTKSGAGLGLAIAREIVVAHGGTIACRSEE 585 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 31/356 (8%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----------SPGTHIRNIAATCSRY 490 D +++G+ V G I L+NPA ++ EEN + S + + C + Sbjct: 355 DTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVF 414 Query: 491 YNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 S G S D R ++ L+ D L S+ NA F ++T Sbjct: 415 KAVSGGKPYAGEEYFSHKDGRVIAMDVASMPLVQDGQLTGSV----NA-----FRDITPR 465 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+AL A +A+ K+ F+ +S+E+R+P+ IIG T LL + L+S+Q+ Sbjct: 466 KETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDTH---LSSEQNY 522 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I S+ LL ++NDILD + ++AG ++ + +L L+ V +A + I Sbjct: 523 YTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVVDILAPRAKAKGIG 582 Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSV 723 + + F++D RL Q+ + NA+ F+ KGS TV L+ + + F++ Sbjct: 583 LTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLEPKDETCVEACFAI 642 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + G IP++ +F+RF R+ G GLGL I + + GG + S+ Sbjct: 643 TDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEALGGAIGFDST 698 >gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 580 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N++ + Sbjct: 336 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 391 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 392 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 451 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 452 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 509 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ IPED + VF RF Q G GLGL+I + I GG + I Sbjct: 510 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 556 >gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 919 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%) Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 K GET D LS V V+ P+ R K+ + + + EE I AT Sbjct: 585 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 640 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 NE + W ++T F+ E G +E++ + Y I L + ML Sbjct: 641 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 682 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E E D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ +Y Sbjct: 683 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 732 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ + + Sbjct: 733 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 789 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ D + ++DR RL Q+ S ++NA+ F+S GS + ++ G F V + G Sbjct: 790 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 848 Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I ++ +F RFV S H G GLGLSI +S + GG + + S + Sbjct: 849 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 897 >gi|227550621|ref|ZP_03980670.1| sensor histidine kinase [Enterococcus faecium TX1330] gi|257888113|ref|ZP_05667766.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257896268|ref|ZP_05675921.1| histidine kinase [Enterococcus faecium Com12] gi|257899255|ref|ZP_05678908.1| histidine kinase [Enterococcus faecium Com15] gi|293379349|ref|ZP_06625493.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecium PC4.1] gi|227180245|gb|EEI61217.1| sensor histidine kinase [Enterococcus faecium TX1330] gi|257824167|gb|EEV51099.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257832833|gb|EEV59254.1| histidine kinase [Enterococcus faecium Com12] gi|257837167|gb|EEV62241.1| histidine kinase [Enterococcus faecium Com15] gi|292641872|gb|EFF60038.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecium PC4.1] Length = 402 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618 RK ++ K+ + +VS+++R+PLT+IIG+ L++ G +S++ + YI A Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + +LV+D+ + V + +N+S + L+ ++ + + NI+I V S K+ Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270 Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 S + D ++L+++F+ +L+NA+ + + ++++ R + + +VKNNG+ IP+ Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERVGSEVVATVKNNGAMIPQQAID 330 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++F+RF V + G GLGL+I +S + LHGG++ + SD+ T+ +P K+ Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387 >gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC 27755] gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC 27755] Length = 995 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 155/298 (52%), Gaps = 33/298 (11%) Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNE-- 560 +T +ER++L T + + L I+P +T L+ V V A R +TE+ E Sbjct: 406 VTQRLEERETLSFTAQTVEGRWLTIIIVPQGYDKTGKLSTVLV-----ANRDVTEEKERE 460 Query: 561 ------------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 A A+ K +F+ ++S+++R+P+ IIGFT L T+ +G+ Sbjct: 461 IERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAIIGFT-ALATTHIGN-TELVLD 518 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y++ I SS LL+L+ND+LD++ +++G +++ Y+T+ L D+L++++ I +H Sbjct: 519 YLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHLPDILHDLRTIIQGSVHSKQQD 578 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG--DFIF 721 + + D + D+ RL Q+ I SNA+ F+ G + + K R +G +F Sbjct: 579 LYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGGMINIRVSEKPCRRDGYITVVF 638 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776 SVK+NG + + K VF+ F S H G+ GLG++I ++ +++ GG + + S Sbjct: 639 SVKDNGIGMSREFRKHVFDSF-SREHTVTENGIGGTGLGMAITKNIVDMMGGTIQVES 695 >gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 1128 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++NE L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ I Sbjct: 446 IQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLV+D+LD + G M + S + L V + + + IRI Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVP 565 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L + AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP + Sbjct: 566 ADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPAEQ 624 Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 625 LEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E + E A K+ F+ ++S+E+R+P+ IIG L S+ Sbjct: 256 DITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K Y+E I+AS+T LL L+ND LDLA ++ G M ++ L+D+LN++++ + + Sbjct: 315 PKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVPFDLSDILNKLEKLMGERAA 374 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718 E ++ + ++ V D RL Q+ + SNA+ FS KG S + + D Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSEKGEVSLSFEMADSTADTFT 434 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G I + +++F F R+ G GLGLSI + L GG + + S Sbjct: 435 LRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVELMGGKLEVKS 494 >gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] Length = 1053 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 14/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611 R L + E +A K+ F+ ++S+E+R+PL I+G +DL L+T LN +Q+Q++ Sbjct: 380 RDLRQAKEQAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQTP----LNPQQNQHLS 435 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ LL ++NDILD + ++AG + + L LL E+ + ++ E N+ + V Sbjct: 436 KIRLAADHLLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCV 495 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725 I+ SFV D RL Q+ +L NA+ FS +GS V L D+ D FSV + Sbjct: 496 DIAAEASRSFVGDPLRLKQVIINLLGNAIKFSDQGS-VRLGCRIDSTDHNSTSLHFSVSD 554 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G I E+ ++F+ F RR G GLGL I + + L GG + + S+ Sbjct: 555 EGIGISEEQQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLEST 608 >gi|254243036|ref|ZP_04936358.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192] gi|126196414|gb|EAZ60477.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192] Length = 595 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + +G+ +F GRI+ +NP A R L+ + + G I I + E+ Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314 Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550 + A++ DE +L+ D +L +S+ P+ P ++ + V D Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +TE+ R + +++ FV S+ELR+P+T + LL+ S+++ + Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + L+ L+ND+L+ + G+ KL ++ L DLL + +Q K + ++ Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +L DR ++ ++ +L NA+ SS+G + L+A R + +V++NG I Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P +F FV + + G GLGL++ + I LHGG +++ S Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582 >gi|254293600|ref|YP_003059623.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042131|gb|ACT58926.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 474 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 126/248 (50%), Gaps = 6/248 (2%) Query: 550 RAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A +L+++ EA L++ + F S+ELRS L I+GF++++K G L+ K Sbjct: 214 QAALSLSQEKEASFELKEKLAQRTLFFAKTSHELRSSLNAILGFSEVMKEGVFGELSDKY 273 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Y + I L V+DILDL+ +DAG K++ + L +L+ ++ + ++ + ++ Sbjct: 274 KEYAQMIHEGGKSLQMTVDDILDLSKIDAGQYKISPVQVSLTELMWDMVKFMSDQARRSD 333 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKN 725 I++ V S + AD + + I ++SNA+ F+ G V + D +G SV++ Sbjct: 334 IKLSVSSLDRDVEAYADPRAVRHIAQNLVSNAIKFTPHGGAVAISVREDEDGGSWMSVRD 393 Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G + + + F+ + + G GLGLS+V F LHGGH+ + S + Sbjct: 394 TGPGMDPAEFEKILKPFIQTDESSTSGKHGTGLGLSVVNGFAQLHGGHIQLDSQAGEGSI 453 Query: 784 INCRIPSK 791 I+ P K Sbjct: 454 ISVYFPKK 461 >gi|170748787|ref|YP_001755047.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655309|gb|ACB24364.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 793 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 12/226 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDL 630 F+ ++S+ELR+PL IIGF D+++ + LG L + + ++Y I S + LL++++DILD+ Sbjct: 530 FLANMSHELRTPLNAIIGFADVMENAVLGPLGTPRYTEYCRDIRESGSHLLSMIDDILDM 589 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690 A ++A ++L+ I ++ + E I + V L +AD Q + QI Sbjct: 590 ARLEARRVRLSPRAISAETAVSAALAPVEAAAREKAITVSVDVVPGL-ELLADPQAIGQI 648 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-DMCK-----SVFNRFVS 744 + ++ NA+ F+ G V ++ R +++NG IP D+ + + R ++ Sbjct: 649 LANLVQNAVKFTPAGGRVAVRGRRAGACTHLYIEDNGIGIPRTDLARLGRPFTQVERQMT 708 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 H+G GLGL+I S + LHGG + I S + T + R+P+ Sbjct: 709 RCHKGS----GLGLAITRSMVELHGGSLRIRSEETVGTIVLVRLPA 750 >gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501] gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 797 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE+ ++ +++KN FV VS+ELR+PLT+I G L+ LG Q +E Sbjct: 429 LTER----KRIEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 484 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++S L +L+ND+LD+ + AG M L +LL E S ++ +R + Sbjct: 485 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 544 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +V D RL Q+ LSNA F+ G + + ++ SV + G IPE Sbjct: 545 TDVRVWV-DGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAF 603 Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF +F + Q+ G GLGL+I + I GG V TT C +P Sbjct: 604 RSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 660 >gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1171 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 3/256 (1%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L D A+ L +K L + K+ F+ ++S+ELR+PL + + LL Sbjct: 454 QTQLLAKQKDDLTNAQGTLAQKASELERTSRYKSEFLANMSHELRTPLNSSLILAKLLAD 513 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +K G+L S+Q ++ + IS++ LL L+NDILDL+ ++AG +++ ++L + + + Sbjct: 514 NKEGNLTSEQVKFAQTISSAGNDLLALINDILDLSRIEAGKVEVQPEVVILRRTVEALLR 573 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + E + + + + D QR QI +LSNA F+ KG + Sbjct: 574 TFQPVAQEKKLGFSISVQEDVAEKLETDPQRFGQILRNLLSNAFKFTEKGEVSLRVFPVG 633 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G F+V++ G I + +F F R+ G GLGLSI L GG V+ Sbjct: 634 PGKVGFAVRDTGIGIAPHQQELIFEAFRQADGSTHRKYGGSGLGLSISRDLARLLGGEVT 693 Query: 774 ISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 694 VQSQPGEGSTFTLTLP 709 >gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] Length = 715 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 20/243 (8%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + + D +A L EA + A K +F+ ++S+E+R+P+ IIG T+L+ + Sbjct: 37 YERIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDT---D 93 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L Q +Y+ + + LL+L+NDILD + ++AG ++L L + L + +S+A + Sbjct: 94 LTDTQREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFR 153 Query: 662 MHENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 H I + + D LG D RL QI ++ NA+ F+++G V+L A ++ Sbjct: 154 AHGKGIELACHVHPEVPDALLG----DASRLRQIVVNLVGNAIKFTTQGE-VVLDVAYES 208 Query: 717 -----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 + F+V + G IP D +S+F+ F R+ G GLGL+I + L G Sbjct: 209 PTNNAANLHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMG 268 Query: 770 GHV 772 G + Sbjct: 269 GRI 271 >gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 13/250 (5%) Query: 537 QTMLTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 Q ML + V+ ++A E E A K+ F+ ++S+E+R+P++ I+G D+ Sbjct: 599 QLMLLLEGLWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADV 658 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L T++L +Q+QY+ + S+ LL ++NDILDL+ ++A +KL L+ L Sbjct: 659 LLTTRL---EDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRA 715 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TV 708 V + + + ++V D L + D RL QI + +LSNA+ F+S+G V Sbjct: 716 VVDPFVLQTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGGVTLRVV 775 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 ++ + + + F V++ G IP D +F F + +++ Q G GLGL+I ++F+ Sbjct: 776 PVQVSGVDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLAISKNFVE 835 Query: 767 LHGGHVSISS 776 + GG + + S Sbjct: 836 MMGGRIWVES 845 >gi|300867581|ref|ZP_07112231.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334469|emb|CBN57401.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 532 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 19/263 (7%) Query: 544 NVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ R E R K + LR EIK+ F +++E +PL ++ T++LK +L Sbjct: 254 DITERNREEIEIRTALAKEKELR---EIKSRFFSMIAHEFANPLNTVLMSTEILKEHQLE 310 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +++ QY+ +I +S ++ L+ND+ +++ + G ++ N I L +++ + I Sbjct: 311 TTEAEKIQYLTHIKTASKHMIELLNDVRFISSAELGKIEFNPVPIDLTKFCSDLVEEIKI 370 Query: 661 KMHENNIRIKVIS----------DGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTV 708 N+I I+ + DG+ + D + + QI S +L NA+ +S +GSTV Sbjct: 371 AAGRNHI-IQFVPTQKSAQNPGEDGQQAEILPLLDAKMMRQILSNLLLNAIKYSPQGSTV 429 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 + + + +F++K+ G IP + +F F + G+ G GLGL+IV+ +NLH Sbjct: 430 YFEFEQSFLEAVFTIKDEGIGIPIADQEQLFESFYRAHNVGKISGTGLGLAIVKECVNLH 489 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG + SS TT IP K Sbjct: 490 GGSIIFSSEVGAGTTFRVAIPLK 512 >gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 1406 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 3/234 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL + D K +F +VS+ELR+PLT ++G + L++ + +E + + Sbjct: 338 RAEALAELDRAKTAFFSNVSHELRTPLTLMLGPLEEALARPAHGLDAALREDLEIVHRNG 397 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L LV +LD + ++AG M+ + + L E+ + + +R+++ Sbjct: 398 LRLRKLVGTMLDFSRIEAGRMQARFEPMALASFTAELASVFRSAVEHAGLRLEIDCPPLS 457 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 DR++ +I +LSNA+ F+ +G + R++ +V + G IPED + Sbjct: 458 APVYVDREQWEKIVLNLLSNALKFTLEGEIRVSLCEREDA-VELAVSDTGVGIPEDQIER 516 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF RF V++A G G+GLS+V ++LHGG V ++S + + R+P Sbjct: 517 VFERFHRVADARGRSHEGTGIGLSLVRELVHLHGGTVRVTSELDRGSVFLVRLP 570 Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 6/237 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + EALR+AD K+ F+ +++ELR+PL + +LL + G+ ++Q++ ++ ++ Sbjct: 1013 QAEEALREADRRKDEFLATLAHELRNPLAPLRTGLELLSVA--GADAAEQARTLDMMTRQ 1070 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + ++ LV+D+LD+ + G ++L + + L+ L+ ++ T + + V Sbjct: 1071 VSHMVRLVDDLLDMNRIRRGKIQLKRARLELSPLVARAIEATRTVCGRAGVTL-VAPPAT 1129 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 AD R+LQ+ +L NA F+ G V + R+ D + V+++G I Sbjct: 1130 AIEVHADADRILQVVHNLLHNACKFTPSGGEVQVSVRREGRDAVVCVQDSGIGIDRAHLD 1189 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPS 790 +F F V + G G+G+GL++V+SF+ +HGG VS +S G ++ R+P+ Sbjct: 1190 GIFEMFAQVDAGNAGSGGGLGIGLTLVKSFVEMHGGSVSAASEGLGQGSVFTMRLPA 1246 >gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] Length = 545 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 539 >gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho africanus TCF52B] Length = 424 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 43/356 (12%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++++ + + + DG I +N R + + PG R + YY + Sbjct: 82 LNNIVDPIIITKKDGTITFANNEARKITR-------PGIEERKVYEVFEDYYVNQ----M 130 Query: 500 FAAIITSFDDERKSL-QGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERAL 555 F I + KSL G + + + +Y I+P+ Q F+ V V ER L Sbjct: 131 FDETINN-----KSLTSGEINIFVNGEKKYYEVKIVPVTLEQNNERFIIVLHDVTQERVL 185 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYI 613 + ++ F+ +VS+ELR+PLT+I G+ + L L K+ +++ I Sbjct: 186 ----------ENVRKEFISNVSHELRTPLTSIHGYAEALLED---DLEDKELIRKFLSII 232 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + + L+ND+LDL +++G + + I ++L V+ I + + ++ + Sbjct: 233 ESEAARMTRLINDLLDLEKLESGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVY 292 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSS---KG-STVILKAARDNGDFIFSVKNNGSS 729 +L V D+ RL Q+ ++ NA+ ++S KG V ++A ++N VK+ G Sbjct: 293 PDEL-YLVGDKDRLTQMTLNLVDNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVG 351 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 IPE K +F RF V A + G GLGLSIV++ + H G + +S EGV T Sbjct: 352 IPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGVIEFTSK-EGVGT 406 >gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 890 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 10/248 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N+ L++ D +K++F+ ++S+ELR+P+ IIG+TDLL G LN Q ++ ++ Sbjct: 287 LQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKVA 346 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A++ LL L+ND+LD++ +++G ++L+ I L +L++ + + + + + + + Sbjct: 347 ANARHLLQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNIE 406 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFI-FSVKNN 726 D + QI ++SNA+ F+ +G I + G FI SV + Sbjct: 407 SGAEKLYVDEDKTKQILINLISNAVKFTHQGGITIKAKVSERGKAKDGSPQFIEISVSDT 466 Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + +F++F + Q G GLGLSIV + LH G V S +T Sbjct: 467 GIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGSTF 526 Query: 785 NCRIPSKE 792 +P K+ Sbjct: 527 YVLLPFKK 534 >gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1186 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 11/259 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E ++IP+ Q ML + D R E L E + E K+ F+ +S+E+RS Sbjct: 451 IELTLIPVQLGQEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRS 510 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G +L+ S +LN +Q Y + + T LL+ +NDILD + ++AG + L Sbjct: 511 PLNAVLGSVELILES---TLNKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQIVLEE 567 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 S L +V Q ++ K + I + + + + S + D QRL Q+ ++ NA+ F Sbjct: 568 SAFSPAKLATQVLQVLSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKF 627 Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 S G I A D + + G I E+ ++F F V + H G GLG Sbjct: 628 SFGGCVAIEMWLADVDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLG 687 Query: 758 LSIVESFINLHGGHVSISS 776 L+I I GGH+ + S Sbjct: 688 LAICAELIAQMGGHIGVDS 706 >gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 820 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/407 (23%), Positives = 182/407 (44%), Gaps = 47/407 (11%) Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 VT++ + W F +++ ++ E + L ++ TI++L G+ V K N Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506 FR +++ E A Y N+ G +D + I+ Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 379 Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + E K G + +L + L + + ++T+ +R L E Sbjct: 380 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 439 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y ++A++ LL Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ILDL+ +++G ++ ++ L++L EV + + + + SD L Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 555 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I + VF RF Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 614 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGLSI +S + GG +S++S TT +P Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 659 >gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] Length = 571 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 143/283 (50%), Gaps = 22/283 (7%) Query: 504 ITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 + F E++ S+ + +L +D +EY + + ++T+ ++E AL + E Sbjct: 714 LPHFSGEKRFLSILKSPKLRADGTVEYVVC---------SGEDITERWKSEEALKKAKEQ 764 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +A +K+ F+ +S+E+R+P+ I+G LL+T+ LN+ Q+ +V+ S L+ Sbjct: 765 AEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTA---DLNADQASFVDMAVRSCDRLV 821 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 L++DI+D + ++AG + + + + L + + V++ N + + D L Sbjct: 822 RLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDFTLDPALPDRI 881 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG-DFIFSVKNNGSSIPEDMC 735 + D RL QI + ++ NA F++ G + L A F V + G IP++ Sbjct: 882 LGDAFRLQQILNNLVDNACKFTTSGRITVQAWNLTAVEPRTVRVFFEVSDTGIGIPDEDL 941 Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F+ F+ + + +GVGLGLSI + + L GG +S++S Sbjct: 942 RRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTS 984 >gi|206601622|gb|EDZ38105.1| Putative periplasmic sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 506 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL E L +K+ FV S+ELR+PLT+I GF +L KLG L +Q + Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L+ LVN +LDL +++G ++ + + L LLN ++ + NI ++I Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRQEAMAEQGNITFRLI 366 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +L + D ++ QI +L NA F+ G V L+ +R + V++ G I Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +F +F V+ + R G+GLGL+I + G + + + T +P Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486 >gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] Length = 617 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP D +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 1021 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+ELR+PLT ++G+T +L+T + + + Q + ++ I ++ L L+ Sbjct: 779 ANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRR--NDPAIQEKGLDVIERNARSLAQLI 836 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 D+LD++ + G + L+ + L ++ + + + + + + V+ G G V D Sbjct: 837 EDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTL-VMEAGVGGGMVTGD 895 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL Q+F +L NA+ F+ G V ++ R N ++ +K++G I + +F RF Sbjct: 896 PGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFW 955 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789 + + G+GLGL+IV + LHGG V S+ G +T R+P Sbjct: 956 QADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 1004 >gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 1070 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 9/254 (3%) Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +A ++T V +V+ + AL E A K+ F+ ++S+E+R+PL ++G T Sbjct: 653 DAPPIITGVHLDVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQ 712 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L ++L +QS++VE I +S L +L++DILD++ +++G+++L + +L+ Sbjct: 713 VLHMTEL---TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVA 769 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 V + E + + + ++ V D +RL QI I+ NA+ F+ G I Sbjct: 770 MVSDITRLRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDSGRVSIDI 829 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769 A F + + G I D S+F+RF N+ Q G GLGL+I + L G Sbjct: 830 RAGAEDVVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMG 889 Query: 770 GHVSISS-SDEGVT 782 G + + S EG T Sbjct: 890 GEIGVESVPGEGST 903 >gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437] Length = 600 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 7/260 (2%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A M D +R A+ R+ D+++ FV +VS+ELR+PL+ + G+++ L Sbjct: 336 ALVMAPLYAGPDEIRGAVAVLRDVTEERRMDKLRKDFVANVSHELRTPLSMLQGYSEAL- 394 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + + Q + I S + LV ++LDLA ++AG ++L ST+ + +L+ V Sbjct: 395 LDDIAASPEDQREITRVIHDESLRMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVY 454 Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + E + ++V + DG + D ++ Q+ + + NA+ + +G V L+A Sbjct: 455 RKFQAIAREEKVALQVDLPDG-MDPVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALF 513 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGH 771 V++ GS IP++ VF RF RGQ G GLGL+IV+ H G Sbjct: 514 AEKGVQLIVEDTGSGIPQEDLPFVFERFYKADKARTRGQ-GGTGLGLAIVKHIAEAHAGS 572 Query: 772 VSISSSDEGVTTINCRIPSK 791 VS+ S + T ++P K Sbjct: 573 VSVKSKEGEGTRFTVQLPVK 592 >gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 929 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 126/236 (53%), Gaps = 10/236 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE+ L EA A+ K+ F+ ++S+E+R+P+ IIG ++LL S+L Sbjct: 251 DITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSEL---Q 307 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YV + S+ LL+++N+ILD + ++AG ++L++ I L DL+ E +S+A + H Sbjct: 308 HQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAARAH 367 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + + D + V D R+ QI ++ NA+ F+ G V+ L+ + D+ + Sbjct: 368 RKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAGEIVVQVKSLEMSTDSVE 427 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F V++ G I +D + +F+ F R+ G GLGL+I + GG + Sbjct: 428 LHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMI 483 >gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] Length = 621 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 130/236 (55%), Gaps = 10/236 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623 A + K+ F+ ++S+ELR+PL I GF++++ G L +++ Y I S LL L Sbjct: 372 ASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQHLLAL 431 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +NDILD++ ++AG M L + L ++ + + + + + + V+ +L AD Sbjct: 432 INDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTL-VLDFVELPEVEAD 490 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI-FSVKNNGSSI-PEDMCK-- 736 + + Q+ +LSNA+ F+ +G + L+A R + G + SV++ G I PED+ + Sbjct: 491 YRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDLERLA 550 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F + V + H ++G GLGL++ ++F+ LHGG + + S+ TT + +P ++ Sbjct: 551 RPFEQ-VESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQ 605 >gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 703 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V A R L E A+ K+ F+ VS+ELR+PL I+G DLL ++ L+ Sbjct: 156 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 212 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE S LL LV+ ILD + ++AG + L + L+ V + +A + Sbjct: 213 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 272 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 + + I + I+D V D R+ QI + NA+ F+ G + A G Sbjct: 273 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGL 332 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +V++ G IPE+ +F F G GLGL+I + G + S+ Sbjct: 333 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARST 390 >gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1152 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 5/250 (2%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T + R L EKN AL + D++K+ F+ + S+ELR+PL IIG + L G L+ Sbjct: 425 TTTERLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLSEL 484 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + + +SS L +L+NDILD + + LN + + + + V + Sbjct: 485 ARHNLHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEAK 544 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + + D L AD R+ QIF ++ NA+ FS +G +++ + NG SV++ Sbjct: 545 QLTLVNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQGE-IVVTGQQVNGWLELSVRD 603 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D K++F F A G R G GLGL+I + + LHGG +S+ S + Sbjct: 604 QGIGIDADSLKTIFEPF-EQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQGS 662 Query: 783 TINCRIPSKE 792 T +P E Sbjct: 663 TFCFTLPVSE 672 >gi|328480233|gb|EGF49153.1| two component sensor transduction histidine kinase [Lactobacillus rhamnosus MTCC 5462] Length = 396 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 122/234 (52%), Gaps = 4/234 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PL +IIG+ L++ + S ++ +Y + Sbjct: 145 EEERRIEQSKDELITNVSHDIRTPLISIIGYLGLIEDHQYRS-EAELLKYTHTAYLKAKQ 203 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+ + V + KLN + +L ++ S + H+ ++RI V + Sbjct: 204 MKVLVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPNPLM 263 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++L ++F+ ++ NA+ + G + L A R + + V N+G+ IP D +F Sbjct: 264 MEADTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLF 323 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RF V + + G GLGL+I +S I LHGG++ SS E +T+ +P K Sbjct: 324 DRFYRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-LTSFVIHLPLK 376 >gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] Length = 1522 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 13/252 (5%) Query: 535 NAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 N + ML ++T AE L E +A++ K++F+ ++S+ELR+P+ I+G Sbjct: 734 NGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAFLANMSHELRTPMNAILGML 793 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL+ + L+ KQ+ Y ++ LL L+NDILD + +++G M L ++ +L Sbjct: 794 TLLRRT---GLDRKQADYAAKSETATRTLLRLLNDILDFSKIESGKMALECIPFDIHVML 850 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-- 708 ++ +++ + + + D L FV D RL QI + + NA+ F+ +G V Sbjct: 851 RDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLF 910 Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 ++ +R F V++ G I + K++F+ F RR G GLGL I + F Sbjct: 911 IKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAEASTTRRFGGTGLGLVISQRF 970 Query: 765 INLHGGHVSISS 776 + L GG +++ S Sbjct: 971 VALMGGELTLES 982 >gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855] Length = 781 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ L+ + + + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 440 IVGFSRLM---TMADNVADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 496 Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F+ Sbjct: 497 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 551 Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 KG R ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 552 FKGEIRFGFEVR--KEYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 607 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 608 RVIVEKIGGEITAESKLNEGSTFRFTIPYK 637 >gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1053 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A++ K++F+ ++S+ELRSPL I+GF+ L+ S G L++ + VE I+ Sbjct: 585 LAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAAS--GDLSAADQENVEIIN 642 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLNL+N+IL +A ++AG LN L LL E+ + + +++ Sbjct: 643 RSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFDLEAATRGLKLNFEIP 702 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIP 731 + +V D +L Q+ +LSNA+ F+ G + A+ +F V++ G I Sbjct: 703 ADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTPTTLLFRVQDTGVGIA 762 Query: 732 EDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 + +F F S GQ + G GLGL+I F+ L GG S+ S Sbjct: 763 QSELDLLFKTF-SQTQSGQNSQDGTGLGLAISRQFVQLMGGDFSVES 808 >gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] Length = 928 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 12/231 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613 LT + + A+ +K+ F+ +S+ELR+PL ++GFT L KT LN Q Y++ I Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTP----LNKHQKDYLDTI 331 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L+ +++DILD + ++AG M+L L D +NEV +A HE + + + Sbjct: 332 MLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYI 391 Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728 + ++ D R Q+ +LSNA+ F+ +GS + + R ++ + SV + G Sbjct: 392 NPQVPDDLTGDPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTGV 451 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP D S+F F R+ G GLGL I + + G +S++S+ Sbjct: 452 GIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSA 502 >gi|53803483|ref|YP_114634.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath] gi|53757244|gb|AAU91535.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath] Length = 910 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 128/265 (48%), Gaps = 8/265 (3%) Query: 533 LPNAQTML-TFVNVTDSVRAERALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNII 588 LP Q +L TFVN+ L E+ N+ +++ ++NS + +S++LR+PL I+ Sbjct: 636 LPEQQKLLQTFVNLIVQAIERVRLAEQARINQVRMESERLRNSLLSSISHDLRTPLATIV 695 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G L + + I S + +LVN+ILD+A DAG++KL+ VL Sbjct: 696 GSASTLVEGDYALEPEDRRELCRAIYDESRRMASLVNNILDMAWFDAGVVKLHLQWHVLE 755 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707 +++ V + ++ + +++ D FV D L Q+ + ++ NA+ ++ + S Sbjct: 756 EIVGTVLTRLKKQLERRPVTVRLPRD---APFVYVDSVMLEQVLANLMENAIRYTPENSP 812 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + + A +V ++G IP+ + +F +F G + GVGLGL+I + + Sbjct: 813 IEIAAEATPFTMTITVSDHGPGIPKGQEELIFEKFYRVHREGPQSGVGLGLAICRAIVEA 872 Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792 HGG++ + G +P +E Sbjct: 873 HGGYIRARNRAGGGAVFTIVLPLRE 897 >gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] Length = 799 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 5/217 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D +K+ F+ VS+ELR+PLT++ L+ L K Q + + L+ Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRAALGLIAGGALQRRPEKVQQMFDVAIGNCDRLVR 619 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVNDILD + +G M+L Y + DLL + + NI ++V + + Sbjct: 620 LVNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRV--EAEPMDLWV 677 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+LQ ++SNA+ FS G+ V+++A+ R + + V+++G IP + +F R Sbjct: 678 DADRILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFER 737 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G GLGL+I + HGG + + S Sbjct: 738 FQQVDASDSRAMGGTGLGLAICRRIVRQHGGQIWVES 774 >gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 8/273 (2%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +++S+ P+P+ + F+ ++T RAE AL + A+ K+ F+ +S+EL Sbjct: 177 VDFSVKPVPDRDGNIQFLVPEGRDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHEL 236 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMK 639 R+PL +IGF++ + G + ++ +Y+E I ++ L L+ DILD++ ++AG + Sbjct: 237 RTPLNAVIGFSEAILAGAAGPASLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTE 296 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L+ +L+ + + K + + V+ L D +R+ QI + NA+ Sbjct: 297 LDEEDCDPTELVRAAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNAL 356 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757 F+ G V + A V + G I + ++ F RR G GLG Sbjct: 357 KFTPTGGKVGICATLVPDGLALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLG 416 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 L+IV F+ HGG VS+ S+ T I +P+ Sbjct: 417 LAIVRHFVEAHGGTVSLDSAPGQGTRITVLLPT 449 >gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L KN+ L+ D++K+ F+ + S+ELR+PL IIG D ++ G ++ Q + + I Sbjct: 443 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPISELQKKNLSMIV 502 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLVNDILD + + +KL S++ + ++ V + ++++ Sbjct: 503 GSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGKDLQLINAIS 562 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPED 733 L AD R+ QI ++ NA+ F+ G + D N +V + G IPED Sbjct: 563 SDLPPVEADENRIQQIMHNLVGNAIKFTDSGVVKVSAELIDVNKKMAITVSDTGIGIPED 622 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +++F F +R+ G GLGL I + + LHGG +S+ S+ Sbjct: 623 KYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKST 668 >gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22] gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N + + Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G+ IPED + VF RF Q G GLGL+I + I GG + I S Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639 >gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51] gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 560 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 125/240 (52%), Gaps = 7/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + + K+ F+ +S+ELR+PLT+++ FTDLL L ++ Q ++YI Sbjct: 309 LEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLL-LQDLPKELKQERQNLKYIK 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+S LL L+N+ILDLA ++AG ++L + + D++ + IA + I ++ D Sbjct: 368 ANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWEISLD 427 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSIP 731 ++ AD ++L ++ ++ NA+ F+ V ++ A RDN + V + G IP Sbjct: 428 PEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNW-LMIRVIDTGIGIP 486 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F RF R+ G GLGL++ + + LH G + + S +T +P Sbjct: 487 PEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVVLLP 546 >gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1071 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 14/249 (5%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ERA + R+A+ K++F+ ++S+E+R+PL ++G LLKT+ L+ +Q + Sbjct: 675 ERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTT---VLDEEQLE 731 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + S L L+ DILDL+ ++A M L+ + L D+ + ++ A + E + Sbjct: 732 YADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLP 791 Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD--FIFS 722 + + + G V D R+ QI + NAM F+ GS + A+ D G +F+ Sbjct: 792 LACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPGQARLLFT 851 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP+D +V F +++ ++G GLGL+I L GG ++I S Sbjct: 852 VADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLTIESEPGQ 911 Query: 781 VTTINCRIP 789 TT+ +P Sbjct: 912 GTTVYLMLP 920 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 8/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +T E R+ D +K F +VS+ELR+PLT I+G L + + + Sbjct: 136 ITRLYEKTRELDALKTRFFANVSHELRTPLTLILG---PLARRLEACADDAARADLRVME 192 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +L V+D+LD+A +DAG M+ Y+ + L + + E IR + + Sbjct: 193 RNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRIRFTIAAP 252 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 +L + V D +++ +I +LSNA F+ G V ++ D GD++ +V +NG +P Sbjct: 253 ERLSAAV-DVEKVRRILQNLLSNAFKFTPDGGAVDVRLEED-GDWVAMTVADNGPGVPPA 310 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + ++VF RF RR G GLGL+I F LHGG + + +S G + +P K Sbjct: 311 LRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPRK 370 >gi|312958187|ref|ZP_07772710.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6] gi|311287618|gb|EFQ66176.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6] Length = 595 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 23/353 (6%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +D + +G+ + GR++ NP + +E RL G A +E Sbjct: 263 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLG----EALVRPELDEQLQLV 318 Query: 499 LFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556 L + + DD ++G L LL+ YS+ P+ + Q +L V V V +RA Sbjct: 319 LRGGNLERAPDDLEVEVEGELRLLT-----YSLTPVSHTQGHILGAVMVLHDVTEQRAF- 372 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + +++ FV S+ELR+P+T + L + S+++ ++ ++ Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPAESREADLLDTVNEE 423 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L+ L+ND+L+ + +G+ KL + DLL + NI + V + Sbjct: 424 MQRLMQLINDLLNFSRYQSGLQKLTLGPCDVPDLLEHAQARFVEPAKAQNIELLVEAQDD 483 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L AD+ +L ++ +L NA+ ++ G + L+A R I SV++NG I Sbjct: 484 LPRLYADQAQLERVLDNLLGNALRHTADGGQIRLQARRHGERVIISVEDNGEGIAYGQQG 543 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV + + G GLGL++ + + LHGG + + S T +P Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594 >gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 922 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 16/251 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L K+ F+ ++S+ELR+PL +++ +L + +L KQ +Y E I Sbjct: 498 LEEKASQLELNSRYKSEFLSNMSHELRTPLNSLLILAQMLAENDNSNLTHKQVEYAETIL 557 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL+L+NDILDL+ +AG M + + L + +K+ + I + + Sbjct: 558 SSGRDLLSLINDILDLSKAEAGKMDVCPRVVKLKAIQEFLKRQYLPVAIQKGITFTIQLK 617 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR---------DNGDFI-- 720 +G +F+ D QRLLQI +LSNA F+ +GS + I KA + DN + Sbjct: 618 NGLPETFITDEQRLLQILKNLLSNAFKFTEQGSVLLSIRKAEKRFTDKQILFDNASTMLS 677 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV + G IP D +F F R+ G GLGLSI L GG + + S + Sbjct: 678 FSVSDTGVGIPRDKHIMIFEEFRQADGTTSRKYGGSGLGLSISNKIAMLLGGFIELESEE 737 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 738 GKGSTFTLYLP 748 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] gi|133738580|emb|CAL61625.1| putative two-component sensor kinase (C part) [Herminiimonas arsenicoxydans] Length = 577 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 8/262 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N Q L + R + AL EA A++ K +V +S+ELRSPL +I+G++ +L Sbjct: 92 NRQNELLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQIL 151 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 ++ L + ++ I S LL LV+++LDLA ++A M+L + I+L+ L ++ Sbjct: 152 LKNE--HLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDL 209 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + +++ +GK+ +V AD +RL QIF +L+NA+ F+ GS V L Sbjct: 210 LSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGS-VTLHVE 268 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGG 770 F V + G I + +F F A RG+ G GLGL+I E I L G Sbjct: 269 CSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGE-PGAGLGLAITEKLILLMNG 327 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 +++ S +T R+P E Sbjct: 328 SLNLVSMQGQGSTFIVRLPLTE 349 >gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 448 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ K+ F+ +S+ELR+PL IIG+T +LK + + KQ + +E I ++ + Sbjct: 202 AAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKRGSVAA--DKQVEVLEIIERNAKLQ 259 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ D+LD+A ++ G ++L+ ++ +++ T + + ++V +L Sbjct: 260 NQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAERLPEV 319 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D R+ Q+ +L+NA+ F+ G V L V ++G+ I +F Sbjct: 320 MVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHLVEAADCLCLVVSDSGTGISPAFIPHLFE 379 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 RF G RR G+GLGL IV + LHGG V S +G Sbjct: 380 RFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQG 421 >gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 2782 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 24/360 (6%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 ++EGV V +I L NPA + +++ ++ +A+ + ++ Sbjct: 2425 MTEGVIVLDTRQQITLFNPAAEQVLDIPASQVL-NQPLQQLASIGDDETSRRRAQTIYNG 2483 Query: 503 IITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVRAERAL 555 I+ R+S QG D V+ +I P+ P+ Q V + D R Sbjct: 2484 IVQGLRRMRES-QGIFSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLRDITRE---- 2538 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 +AD+ K F+ VS+ELR+PLT I G+ D+L + +L Q Y+ I Sbjct: 2539 -------IEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQINYLTIIKN 2591 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 ++ L L+ DIL+ + D+ KL ++ + + +++EV QS+ + + +++ + Sbjct: 2592 NTNRLRALIEDILEFSRPDSK-KKLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPP 2650 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734 L AD++R+ QI + SNA+ ++ +G ++ ++A + + + V++ G + + Sbjct: 2651 TLPPVTADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQ 2710 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 K +F F N R G GLGLSI + + +HGG + ++S +T IP ++ Sbjct: 2711 LKKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQ 2770 >gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 510 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 11/245 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYV 610 R L + E A+ K+ F+ ++S+ELR+PL IIG+++LL S+ G + S+ + Sbjct: 253 RLLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDASEWGEW--EISEDL 310 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I ++ LL L++DILD++ ++AG + L+ + LLN+V +I + +NN R++ Sbjct: 311 EKIKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQ 370 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNN 726 V + + + D +L Q+ +LSNA F++ G ++LKA+ R F+V ++ Sbjct: 371 VDTPPEEITLFTDATKLRQVLYNLLSNATKFTTDGE-IMLKASLCRLRRQPRLEFAVSDS 429 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G + E+ +F F R+ G GLGL I F + GG + +S T Sbjct: 430 GIGMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATF 489 Query: 785 NCRIP 789 +P Sbjct: 490 TVSLP 494 >gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 812 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 12/271 (4%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +Y + +Q + + + + + L ++ E K++F+ +S+E+R+P+ Sbjct: 389 QYGFLVFGLSQALFIADRMIQNFKNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNG 448 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+G T + + SL +Q +Y+ I S LL LVNDILDL ++AG +L TIV Sbjct: 449 ILGMTQMFGQT---SLTDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIV 505 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705 L+ LN++ Q +K++ + ++++++ L + D++R QI S +L NA+ F+ G Sbjct: 506 LSKFLNDMVQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG 565 Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAH-RGQRRGVGLGL 758 T+ L D D +K+ G IP + +F F+ ++H G+ G GLGL Sbjct: 566 -TISLIVWSDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGL 624 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +I + + G +S+ S + + IP Sbjct: 625 TITKKIVEEMSGKISVLSELGKGSVFHVEIP 655 >gi|15600677|ref|NP_254171.1| two-component sensor [Pseudomonas aeruginosa PAO1] gi|107104586|ref|ZP_01368504.1| hypothetical protein PaerPA_01005665 [Pseudomonas aeruginosa PACS2] gi|218894587|ref|YP_002443457.1| putative two-component sensor [Pseudomonas aeruginosa LESB58] gi|9951818|gb|AAG08869.1|AE004961_4 probable two-component sensor [Pseudomonas aeruginosa PAO1] gi|218774816|emb|CAW30634.1| probable two-component sensor [Pseudomonas aeruginosa LESB58] Length = 595 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + +G+ +F GRI+ +NP A R L+ + + G I I + E+ Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314 Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550 + A++ DE +L+ D +L +S+ P+ P ++ + V D Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +TE+ R + +++ FV S+ELR+P+T + LL+ S+++ + Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + L+ L+ND+L+ + G+ KL ++ L DLL + +Q K + ++ Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +L DR ++ ++ +L NA+ SS+G + L+A R + +V++NG I Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P +F FV + + G GLGL++ + I LHGG +++ S Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582 >gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 885 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 15/276 (5%) Query: 526 LEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 L+ S +P+ + Q ++ +++D R E L + + A+ K F+ +S+E+ Sbjct: 191 LQMSTVPVRSGQGLVVGSVSVARDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEI 250 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ +IG ++L + ++L +++Q Y++ + LL+LVND+LD + ++AG + L Sbjct: 251 RTPINGVIGASELCQETEL---DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNL 307 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699 +L EV + A + + I + + D ++ +V D RL QIF +L NA+ Sbjct: 308 EQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAV 367 Query: 700 DFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 F+ G V I++ + F V++ G I E +++F+ F RR G Sbjct: 368 KFTEAGEIVLSAHIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGG 427 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + L G +S+ S +T +P Sbjct: 428 TGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVP 463 >gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 895 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+E K++F+ ++S+E+R+P+ I+G L + L ++Q +Y+ + +S+ LL+ Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMAQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + +++G M+++ + + + + + E I + V IS + Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL QI + +L NA+ F+ +G ++ + A D + F +++ G I + K++F Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++L GG +++ S Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVDS 476 >gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus DSM 14838] Length = 329 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/336 (25%), Positives = 158/336 (47%), Gaps = 35/336 (10%) Query: 449 VFGPDGRIKL--SNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 ++ P G IK +++L+ KT E P H+ + ++ Y Sbjct: 3 LWAPYGGIKHFEGKKCWQALYTDKTGECEFCPKRHLIDENGLPTKVY------------- 49 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEAL 562 S+D +R Q + S + P + Q ++T V++ + E L + Sbjct: 50 -SWDYQRPFDQCWFRVFS------AAFPWIDGQMAHVITSVDIDHQKKIEEELIIAKDKA 102 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 D +K++F+ ++S+E+R+PL +I+GF +L + ++ Y+E + ++ +LL Sbjct: 103 ENLDRLKSAFLANMSHEIRTPLNSIVGFASMLVEEE---DKEERQGYIEIMQENTELLLQ 159 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++DILDL+ ++AG + N + + D ++ + K + + + + S Sbjct: 160 LISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIK-EDKPVPVVLASGLPDYRIYT 218 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D++RL+Q+ + ++NA+ F+SKG + ++ + I FSV + G I D VF+R Sbjct: 219 DKKRLMQVITNFINNALKFTSKGQITLEYHFKEGTNEIEFSVTDTGIGIAPDAVGQVFDR 278 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 FV N +G GLGLSI S + GG + S Sbjct: 279 FVKLNTF---SKGTGLGLSICRSIVEHLGGTIGAES 311 >gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 1003 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 38/263 (14%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L+ K EA KA+ K++F+ + +ELR+PL +IGF+++L G LN +Q++YV Sbjct: 712 ERLLSAKIEA-EKANIAKSNFLASMGHELRTPLNAVIGFSEVLLDQFFGPLNPQQAEYVN 770 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669 I S LL L+NDILDL+ V+AG M+ L+ ++ E ++I + E IR+ Sbjct: 771 DILHSGRHLLTLINDILDLSKVEAGWMRFLPVPTPLDSVMGESLKTIGPMIKEKQIRLIR 830 Query: 670 ---KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------------AA 713 K S L S D +L QIF+ +LSNA F+ KG T+ + A Sbjct: 831 DLPKEFSKIHLHS---DPVKLKQIFNHLLSNAAKFTPKGGTITITGKIVSDVCLPSNMAL 887 Query: 714 RDN--------------GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 +D +++ G+ + +F F V + G GLG Sbjct: 888 KDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTSGHSDKIFESFFQVEGGISDKSPGTGLG 947 Query: 758 LSIVESFINLHGGHVSISSSDEG 780 LS+ F+ +H G + + S G Sbjct: 948 LSLARRFVEMHKGRIWVHSDGLG 970 >gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 1139 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 5/244 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R A ++ EAL + D K +F +VS+E R+PLT ++G + L G L++ + + Sbjct: 328 ARVYEAERQRAEALAEIDRAKTTFFSNVSHEFRTPLTLLLGPVEDLLNQAAGKLDADEQE 387 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I + LL LVN +LD + ++AG ++ Y I L E+ + + + ++ Sbjct: 388 ELKTIHRNGLRLLKLVNSLLDFSRIEAGRIQAAYQEIDLAGYTAELASVFRSAIEKAGLK 447 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727 V DR +I ++SNA F+ +G V L+ N + +V++ G Sbjct: 448 FTVDCPPLAEPIFVDRDMWEKIVLNLISNAFKFTLQGEIEVRLRQVGKNAE--LTVRDTG 505 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + IP + VF RF V G G+GL++V + LHGG VS+SS +T Sbjct: 506 AGIPAEQVNRVFERFHRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFT 565 Query: 786 CRIP 789 +P Sbjct: 566 VSLP 569 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER + E+ LR +F +S++LR+PL ++ GF ++LK + + Y+ Sbjct: 903 ERLVVERTAKLRDTIGELEAFSYSISHDLRAPLRSMQGFAEVLKEDCRDQIGPEGQLYLN 962 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIK 670 IS S+ + L+ D+L + + +L I LL + S + + + I IK Sbjct: 963 KISDSARRMDRLIQDVLTFSKM--ARTELILEPINTEKLLQTILDSYPSFQPPFSQIAIK 1020 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGS 728 +L + + L Q S ++ NA+ F G+ + + A +G K+NG Sbjct: 1021 A----RLPLVLGNEAALTQCISNLIGNAIKFVQPGTVPQISVWAEEQDGYVRLFFKDNGI 1076 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 IP+ + +F F +S + G G+GL+IV+ + GG V + S + Sbjct: 1077 GIPKISQERIFGIFQRISTGY----EGTGIGLAIVKKAVERMGGKVGLYSEE 1124 >gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] Length = 587 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 524 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 11/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L + K+ F+ ++S+ELR+PLT IIGF +LL ++ GSL Sbjct: 119 DITERDLIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELL--AREGSLA 176 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ ++ I +S L ++VND+LD + ++ G ++L L L+ + +A + Sbjct: 177 PQERHWLARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAE 236 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717 + + + + DG D RL QI ++ NA+ F++ G V ++ + D G Sbjct: 237 RKGVGLAIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGG-VTIRVSEDVGAGGPP 295 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F++ + G IP+ VF RFV R G GLGL+I + L GG + + Sbjct: 296 QVRFAISDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVE 355 Query: 776 S 776 S Sbjct: 356 S 356 >gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] Length = 505 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N++ + Sbjct: 261 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 316 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 317 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 376 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 377 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 434 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ IPED + VF RF Q G GLGL+I + I GG + I Sbjct: 435 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 481 >gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 660 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N++ + Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ IPED + VF RF Q G GLGL+I + I GG + I Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636 >gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] Length = 947 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 15/228 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK EA +A K+ F+ +S+E+R+P+ I+G DL T + SL K + I S Sbjct: 562 EKAEAGSRA---KSDFLSRMSHEIRTPMNAIVGLADL--TEMIPSLPEKAQINLTKIKTS 616 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL+L+NDILD++ +++G M+L + LN LL +++ + + + +V + + Sbjct: 617 SRYLLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEAERRELTFRVEKNLQ 676 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIP 731 F+ D RL Q+ +LSNA F+ G TV L+ + G+ + V + G I Sbjct: 677 HDVFIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTGNVLVQVIDTGIGIS 736 Query: 732 EDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 E+ K +F F NA + Q G GLGL+I + I L GG + + S Sbjct: 737 EENQKRIFRSFEQVGPNATKCQ--GTGLGLAISRNIIKLMGGEILVKS 782 >gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum] Length = 951 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 498 ---SLPQDANRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + S D RL Q+ S +LSNA+ F+ G V RD Sbjct: 555 YLPLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIVFEVGCRD- 613 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 674 ESEPGLGSLFGVRIP 688 >gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1007 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 10/245 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++T +AE+ L EA A+ K++F+ ++S+E+R+P+ IIG T LL+T+ Sbjct: 601 TVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTT--- 657 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +Q Y+E I S+ L L++DILDL+ +++G ++L YS L + E+ S Sbjct: 658 VITPEQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQF 717 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 ++ + ++ I+D D+ R QI ++ NA+ F+ +GS I L A +D+ Sbjct: 718 QIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQGSIAITARLVAQQDD 777 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 I S+ + G + +F F N+ + G GLGL+I + I L GG + Sbjct: 778 LALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIW 837 Query: 774 ISSSD 778 S++ Sbjct: 838 AESTE 842 >gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] Length = 603 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 12/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++TD ER L + +A K F+ +S+E+R+P+ IIG ++LL + L Sbjct: 47 TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 106 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Y + +SS LL L+N ILD ++AG + L L LL+ + +++ Sbjct: 107 PLY---QEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSV 163 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + I+V D ++ + + D +L Q+ + +L NA+ F+ +G+ V L R +GD Sbjct: 164 KAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDA 222 Query: 719 ---FI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772 F+ F V + G IP+D +F F ++ + G GLGL+I + + LHG + Sbjct: 223 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 282 Query: 773 SISS 776 + S Sbjct: 283 RVES 286 >gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E + EA A+ K+ F+ ++S+E+R+P+ IIG L S+ Sbjct: 256 DITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K Y+E I+AS+T LL L+ND LDLA ++ G M ++ L+D+LN++++ + + Sbjct: 315 PKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLMGQRAA 374 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720 E ++ + ++ V D RL Q+ + SNA+ FS KG + + A D + Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLNFEMADSTADTLT 434 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G I + +++ F R+ G GLGLSI + L GG + + S Sbjct: 435 LRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGLGLSIANRLVQLMGGKLEVES 494 >gi|312880831|ref|ZP_07740631.1| response regulator receiver modulated diguanylate cyclase [Aminomonas paucivorans DSM 12260] gi|310784122|gb|EFQ24520.1| response regulator receiver modulated diguanylate cyclase [Aminomonas paucivorans DSM 12260] Length = 998 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E AL +A K++F+ H+S+E+R+PL I+G + LL G L+ +Q ++V Sbjct: 200 RRLEETRLALEEAHRTKDAFLAHISHEIRTPLNGILGLSRLLGE---GDLSREQEEHVSL 256 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 + IL+ L++D+LD + ++AG +++ L +V ++ A + E + ++V Sbjct: 257 LLLEGQILVRLLDDLLDFSKIEAGRLEVESIPFAPGQLTRDVGRAFAHRASEKGLPVEVR 316 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730 + D + D RL QI +LSNA+ F+S+G ++ L A D ++SV++ G + Sbjct: 317 VRDSVPPGALGDPNRLRQILGNLLSNAVKFTSRGRVLLELDAPGDR--LVWSVEDTGEGV 374 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + + +F FV RR G GLGL I S L GG + +SSS Sbjct: 375 APEALERIFQPFVQADPSVARRHGGTGLGLPISRSLATLMGGTLEVSSS 423 >gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas haloplanktis TAC125] gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125] Length = 918 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT + + A+ +K+ F+ +S+ELR+PL +IGFT L + LN Q Y++ I Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKT---PLNKNQKDYLDTIE 332 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S+ L+ +++DILD + ++AG M+L L D +NEV +A H+ + + + IS Sbjct: 333 LSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQLELSIYIS 392 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729 D RL Q+ +LSNA+ F+ KG+ + + R + + SV + G Sbjct: 393 PQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISHRLLDDERTSILVSVADTGVG 452 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP D ++F F R+ G GLGL I + + G ++++S+ Sbjct: 453 IPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGKITLNSA 502 >gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] Length = 590 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+K ++++ FV +VS+EL++P+T+I GF++ L + +Q Q++ I S + Sbjct: 356 LKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQ-QFLSIILTESQRME 414 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L+ D+LDL+ V+ KL+ ++ LN LL EV ++ + E I + + + + Sbjct: 415 SLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWID 474 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D QRL+Q+F ++ NA+ ++ G TV + + V++ G I D +F R Sbjct: 475 GDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEISRIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 F V A G GLGL+IV+ + H G + + S TT + ++ Sbjct: 535 FYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKL 583 >gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 676 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 26/282 (9%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------KNSFVQHVS 577 ++ + +P A + T +RA R +T + EA+R D K+ F+ VS Sbjct: 128 FAFVEMPVAHG-----DATHWLRAGRDVTARVEAIRSRDAALERAEAASVAKSRFLATVS 182 Query: 578 YELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 +E+R+PL I+G DL+ LG+ LN +Q YVE + S LL L++ +LD + ++AG Sbjct: 183 HEMRTPLNGILGMADLV----LGTELNPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAG 238 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695 + L L L V + +A + + I I + +++ + + D R+ QI + Sbjct: 239 RLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVLGDADRVRQILINLA 298 Query: 696 SNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751 NA+ F+ +G V L AR G+ + +V + G IPE+ +F F R Sbjct: 299 GNAIKFTERGGVGVSLGFARAGTGGEVVLAVADTGPGIPEERLPILFEEFEQGDGSASRS 358 Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGL+I + GG + S +T +P E Sbjct: 359 HEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLPLAE 400 >gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] Length = 937 Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 +++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPAGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + + DN + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar chinensis CT-43] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 660 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N + + Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ NY ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G+ IPED + VF RF Q G GLGL+I + I GG + I S Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 11/259 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF ++ + + E L A + K+ F+ ++S+E+R+PL ++G LL+++ Sbjct: 971 TFQDIDERKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLEST--- 1027 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S +++Q +Y+E SST L L+ DILDL+ ++AG M L + DL Sbjct: 1028 SKDAEQDEYIEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFEL 1087 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + E +++ + D L + V D+ RL QI ++ NA+ F+ G + L + D Sbjct: 1088 AVKEKGLKLDFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTETGDVRVEACHLPCSND 1147 Query: 716 N-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + +F V + G I + M VF F RR G GLGLSIV + GG + Sbjct: 1148 DIQRVLFIVSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSL 1207 Query: 773 SISSSDEGVTTINCRIPSK 791 +I S++ TT +P K Sbjct: 1208 AIDSTEGTGTTFYLSLPLK 1226 >gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 395 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 156/318 (49%), Gaps = 36/318 (11%) Query: 498 DLFAAIITSFDDERKSL----QGTLELLSDSV----LEYSIIPLPNAQTMLTFVNVTDSV 549 D+ A I++++DD K +G + L+ + LE +I T NV Sbjct: 79 DIKAVIVSAYDDLDKIRSAMNRGAFDFLTKPIDFQDLEITI--------QKTLENVQQLK 130 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +R EK+EA A+ K+ F+ ++S+ELR+PL IIG++++L SL SK + Sbjct: 131 ENKRLKQEKHEA-EAANRAKSVFLANMSHELRTPLNAIIGYSEIL-LEDAHSLGSKDFIH 188 Query: 610 -VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I S LL ++NDILDL+ ++AG M +++ ++ + L+ V +I + +NN Sbjct: 189 DINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQNNNI 248 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF-------- 719 +++I + +AD ++ Q+ +LSNA F+ G ++ +K A ++ DF Sbjct: 249 LEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNRDCN 308 Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 I SV + G I E+ S+F F + R+ G GLGL+I F + GG Sbjct: 309 FTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMMGGD 368 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S + + P Sbjct: 369 ITVVSEVNKGSIFTVKFP 386 >gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 929 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%) Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 K GET D LS V V+ P+ R K+ + + + EE I AT Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 NE + W ++T F+ E G +E++ + Y I L + ML Sbjct: 651 --NEWN-WVRMNVVVTKFESE----HGEVEIIG---INYDITELKETEAMLI-------- 692 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E E D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ +Y Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ + + Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 799 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ D + ++DR RL Q+ S ++NA+ F+S GS + ++ G F V + G Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858 Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I ++ +F RFV S H G GLGLSI +S + GG + + S + Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 907 >gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] Length = 1407 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 12/250 (4%) Query: 549 VRAERA-LTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + AER L + ++ R A E K+ F+ +S+ELR+PL ++G+T LL+ +L Sbjct: 996 LEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLGWTQLLRKQQLDE-- 1053 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +K +Q +E I S+ L+ D+LD++ + G M+L + L ++ + Sbjct: 1054 AKTNQALEAIERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLIPVIEAAIDVVQLAAD 1113 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 NI+I+ D + V D+ RL Q+ +LSN++ F+ G + + V Sbjct: 1114 AKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRIDITLDYSPFQGEIQV 1173 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG 780 ++ G I D +F+RF A R R G+GLGLSIV + LHGG V ++S EG Sbjct: 1174 RDTGVGISADFLPYIFDRF-RQADRSPTRSNTGLGLGLSIVRHLVELHGGTVEVTSPGEG 1232 Query: 781 V-TTINCRIP 789 T R+P Sbjct: 1233 QGATFTVRLP 1242 >gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 933 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++ D +R A L E A++ K +F+ H+S+ELR+PL I+G+ +LK K +L Sbjct: 454 HLEDMIRERTAELAVAKERADAANQAKGAFLAHMSHELRTPLNGILGYAQILKCDK--NL 511 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + + I S LL ++NDILD+A ++AG +L S + L + + ++I K Sbjct: 512 DRRHVDGITVIQRSGEHLLAIINDILDMAKMEAGKAELTLSDVPLEGFIYFIAETIRVKA 571 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E + L + V D +RL Q+ +LSNA+ F+ GS + F Sbjct: 572 MEKGLAFACELAPNLPAAVRVDEKRLRQVLLNLLSNAIKFTETGSVRLRVGWMPPARLSF 631 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I E ++F F VS+A R Q G GLGL+I + L GG + + S Sbjct: 632 EVRDTGIGIHEARLGAIFRPFEQVSDA-RHQIGGTGLGLTISRQLLRLMGGEIRVDS 687 >gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396] Length = 1437 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 129/248 (52%), Gaps = 11/248 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E+ L E A + K+ F+ ++S+E+R+P+ I+G +LLK + +L Sbjct: 763 DITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRT---NLE 819 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YV +S+ LL ++NDILD + ++AG + L+ L+ LL +V I + Sbjct: 820 ERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITANLG 879 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719 + + + D K+ ++ D RL QI + NA+ F+ +G TV LK+ ++ Sbjct: 880 DKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEEDRLV 939 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + FSV++ G I + + +F F RR G GLGL+I + L GG ++ + Sbjct: 940 LSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIA-AE 998 Query: 777 SDEGVTTI 784 S+EG ++ Sbjct: 999 SEEGEGSV 1006 >gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1431 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 38/389 (9%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--- 474 ++T Q E Q +D+ + PDG I++ NPA +L + L Sbjct: 601 DITEQRRSEATLQAYSTFQKAMLDNAGHAIISCKPDGMIQVFNPAAEALLGYSADELVGK 660 Query: 475 -SPGT--HIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLE---LLSD 523 +PG + + A ++ E G+D+F + R++L E + D Sbjct: 661 QTPGIFHDLDEVVARARQFSAELGTTIEPGFDVF------VEKCRRNLPNEHEWAYVCKD 714 Query: 524 SVLE---YSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 + ++ L A +T ++T + L EA A+ K+ F+ + Sbjct: 715 GTRKTVLLNVTALREADGRITGYLGIATDITPLKLTAQELVSAKEAAEAANVAKSRFLAN 774 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL ++G T+LL ++ SL++KQ +E + S LL ++NDILD + ++A Sbjct: 775 MSHEIRTPLNGVLGMTELLLST---SLSAKQQSLLETVRRSGVALLEVINDILDFSKIEA 831 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694 G ++L L ++ E + A + + + S V D RL QI + Sbjct: 832 GKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADVPDSLVGDAVRLRQILLNL 891 Query: 695 LSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 + NA+ F+++G TV A + D V++ G IP+ +F F Sbjct: 892 IGNAIKFTAQGEVTVAFALAEQHADTLTLACRVRDTGIGIPDAAQAQLFTAFTQADGSTT 951 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSS 777 RR G GLGL+IV+ + L GG V + S+ Sbjct: 952 RRFGGTGLGLAIVKQLVQLMGGEVGLVSA 980 >gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf] gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf] gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 543 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + + K+ QY Sbjct: 266 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 324 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 325 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 384 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 385 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 444 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP D +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 445 IPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 493 >gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 911 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 12/246 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612 AL + L +A + K++FV +S+E+R+P+ +IG ++L LKT LN++Q+ Y+ Sbjct: 173 ALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQ----LNAEQNDYLTK 228 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I S +LL LVND+LD + ++AG++KL +L+ + +E N+ I Sbjct: 229 IKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNSFSAYEKNLELITD 288 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNG 727 I+ + D R+ QI +++NA+ F+S+GS I ++ + + S+K + G Sbjct: 289 IAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEEGHVSLKCEVSDTG 348 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IPE+ ++F+ F R+ G GLGL+I L GG +++ S TT Sbjct: 349 IGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSITVKSELGSGTTFT 408 Query: 786 CRIPSK 791 +P K Sbjct: 409 VHLPLK 414 >gi|304393564|ref|ZP_07375492.1| histidine protein kinase DivJ [Ahrensia sp. R2A130] gi|303294571|gb|EFL88943.1| histidine protein kinase DivJ [Ahrensia sp. R2A130] Length = 564 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 14/236 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTIL 620 L + + F Q +S+ELR+PL I GF+ LL + G L + KQ +YV I SS L Sbjct: 267 LERGESQAKKFAQ-MSHELRTPLNAIGGFSQLLASGVAGPLTTDKQREYVALIQQSSDHL 325 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISD--GK 676 L +V D+LD++ +D G +L+ + D + E+ QS M I I ++ D Sbjct: 326 LQIVGDLLDVSRIDQGHFELDVAAF---DFV-EMAQSTTAMMQAEAIAADIDLVCDMPKS 381 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 L + V DR+ Q+ +LSNA+ FS GS+V L A R +G F+ + G + + Sbjct: 382 LAAVVGDRRACQQVLINLLSNAIKFSPAGSSVRLTA-RRHGRFVKIRCSDFGIGMTREFI 440 Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F+ A G G GLG+S+V+ + LHGG + S + TT+ +P Sbjct: 441 DQIGRPFMQAQPASEGGPTGSGLGVSVVKGLVELHGGQIHFDSKPDEGTTVTVMLP 496 >gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] Length = 1323 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 129/244 (52%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E+ L E +A + K F+ ++S+E+R+P+ I+G L +KL Sbjct: 580 LLDLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q +YV I+ S+ LL ++N+ILD + ++AG + + L+D+L+ V I+ K Sbjct: 638 -DTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNVTAVISLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+ +G VI + ++ N + Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEIVITARVSQLNDQY 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I ++ +FN F ++ Q G GLGLSI + + L GG +S+ Sbjct: 757 VTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISV 816 Query: 775 SSSD 778 S++ Sbjct: 817 RSTE 820 >gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 725 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 116/218 (53%), Gaps = 4/218 (1%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+ELR+PL I+G++ LL+ + G + ++ + I + L LV Sbjct: 323 ANRAKDEFLATLSHELRTPLNAILGWSGLLRDA--GGDPERLARGLAVIDRNGRTLAQLV 380 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 +D+LD++ + AG +++ ++ + L ++++ +++ + I + +L V D Sbjct: 381 SDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRAAARAKGVAISRSAGPELPRVVGDA 440 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ ++SNA+ F+ G +V ++ R+ G + VK+ G + D +F+ FV Sbjct: 441 GRLRQVAWNLVSNAVKFTPPGGSVDVRLGREGGAAVLEVKDTGVGMSRDFLPIMFDPFVQ 500 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 RR G+GLGL+I + + LHGG + S G Sbjct: 501 AEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESDGPG 538 >gi|115376892|ref|ZP_01464113.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310825368|ref|YP_003957726.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115366071|gb|EAU65085.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309398440|gb|ADO75899.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 989 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 8/242 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER E+ EAL D K +F +VS+E R+PLT ++ + + L +Q + + Sbjct: 330 AERRRAEQLEAL---DRAKTAFFSNVSHEFRTPLTLMLAPVEDALADREEVLAPRQRERL 386 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + LL LVN +LD + ++AG K+ Y L E+ + MH + + Sbjct: 387 SLVQRNGARLLKLVNSLLDYSRLEAGRAKVAYQATDLPAFTAELVSHFESAMHRAGLVLT 446 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSS 729 V + G DR+ ++ +LSNA+ ++ +G + + R+ G + + V++ G+ Sbjct: 447 VAMEPLAGPVWVDREAWEKVVFNLLSNALKYTLEGDIEV--SLREEGAEAVLRVRDTGTG 504 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + VF RF V G G+GLS+V+ + LHGG S+ S +T R Sbjct: 505 IPAEALPHVFERFHRVEGTWARSHEGSGIGLSLVQELVKLHGGSASVHSVLGQGSTFTVR 564 Query: 788 IP 789 +P Sbjct: 565 LP 566 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 114/245 (46%), Gaps = 9/245 (3%) Query: 549 VRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +R E A+ E +E L++A ++ F+ S+EL++PL + T+ L+ + ++ Sbjct: 738 LRREAAVREASELTLQEAVHARDDFLSVASHELKTPLAALRLQTEALERILPPEVRARVG 797 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + + L L+ +LD++ V G ++L + L L+ + + +M Sbjct: 798 ERFFAVRRQTQRLAGLIETMLDISLVATGRLQLKPEPLDLAGLVADGVAQLREEMARRGC 857 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + + S+ L + D R+ Q+ +LSNA+ + + G V ++ + V ++G Sbjct: 858 SLTLESEASLPGKL-DAMRMGQLVQNLLSNAIKYGA-GKPVEVRLRQKGNVARLEVVDHG 915 Query: 728 SSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + + +F+RF V H G G+GLGL + + HGG +S++ + G T Sbjct: 916 IGVAPENRARIFHRFERAVPVRHYG---GLGLGLWVSRQVVEAHGGSISVTDTPGGGATF 972 Query: 785 NCRIP 789 +P Sbjct: 973 TVELP 977 >gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 609 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 12/252 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + +T ++ + +TE+ K + + FV +VS+ELR+PLT I +T+ L+ G+L Sbjct: 356 IGITGTIAVLQDVTEQE----KLEASRREFVANVSHELRTPLTTIKSYTEALED---GAL 408 Query: 603 NSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ ++V I + ++ LV D+L L+ +D+ L+ + ++L +V+ + Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSF 468 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719 +M + +IR + + + + DR + Q+ ++SNA+ ++ G T+ + A+ + G Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SVK+ G IP+ +F RF V A G GLGLSI + HGG +++ S Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588 Query: 778 DEGVTTINCRIP 789 E TT+ +P Sbjct: 589 LEKGTTVTFTLP 600 >gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 444 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 12/241 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610 R +TE+ R+ ++++ FV + S+ELR+PLT+I GF + L+ G++N ++ +++ Sbjct: 213 RDITER----RQLEQMRTEFVANASHELRTPLTSIRGFIEALRD---GAINEPETARRFL 265 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + L LV+D+L LAT++ + L ++ + A++ + + ++ Sbjct: 266 GIIEEETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALR 325 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V ++DG L + D++ L Q+F +L NA+ F+ KG I AA + G + V + G+ Sbjct: 326 VELADG-LPPVIGDQKLLTQMFINLLDNAVKFTEKGEITIRAAAAEGGVEV-EVLDTGAG 383 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I + +F RF + G GLGL+IV+ + HGG + + S TT + +P Sbjct: 384 IAPEHLPRIFERFFRGDKARTQGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443 Query: 790 S 790 + Sbjct: 444 A 444 >gi|309792039|ref|ZP_07686515.1| ATPase domain-containing protein [Oscillochloris trichoides DG6] gi|308225932|gb|EFO79684.1| ATPase domain-containing protein [Oscillochloris trichoides DG6] Length = 801 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLV 624 D+ K F+ +S+ELR+PLT I G+TDLL + + + Q++ +E + + + N+V Sbjct: 557 DQAKTDFIATISHELRTPLTVIRGYTDLLLRGRGEEAPTTDQAELLEQVRLRAVDMTNIV 616 Query: 625 NDILDLATVDAGIMKLNYST----IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 N+ + +A +++G ++ + +VL+ L+ ++Q +K N+ I + L Sbjct: 617 NNAIMIADLESGQLETDLQPQDVELVLSMALSPLRQGFESK----NLSINLELAPDLPPV 672 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +ADR++L + F +IL NA+ ++ +G I R+ + + G+ IP +M +F Sbjct: 673 LADREQLRRAFGQILDNALRYTHQGGVTIQATVRNAHEIEVHFSDTGTGIPAEMLPRLFM 732 Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT-TINCR 787 RF + +RG GLGL+I I GGHV+ IS+ EG T TI R Sbjct: 733 RFQRVEGNNSAQRGSGLGLAITRQLIERQGGHVTVISTPGEGSTFTITLR 782 >gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 513 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 139/255 (54%), Gaps = 12/255 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F ++T+ V+ ++ L E E +++ +K++F+ ++S+E+R+PL IIGF+D++ + Sbjct: 260 LLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMI--CQ 317 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G KQ +Y++ +S+++ +LL L++DILDL+ ++AG M+ + +NDL+ + + + Sbjct: 318 TGEEEEKQ-EYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQM 376 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K ++ I + DR RL Q+ +NAM F+ KGS + + A+D Sbjct: 377 QEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKD 436 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N +G GLGL+I + GG + Sbjct: 437 --EIYFYVKDTGIGIPADKINEVFERFVKLNTF---AKGTGLGLAICRVIVERLGGTIGA 491 Query: 775 SSSDEGVTTINCRIP 789 S + + R+P Sbjct: 492 DSKEGEGSCFWFRLP 506 >gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 693 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT V A R L E A+ K+ F+ VS+ELR+PL I+G DLL ++ L+ Sbjct: 146 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 202 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE S LL LV+ ILD + ++AG + L + L+ V + +A + Sbjct: 203 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 262 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719 + + I + I+D V D R+ QI + NA+ F+ G + A G Sbjct: 263 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGL 322 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +V++ G IPE+ +F F G GLGL+I + G + S+ Sbjct: 323 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARST 380 >gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 599 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 28/353 (7%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + E + V P G I L+NPA L+K L G +R + R + DLF Sbjct: 257 IREAIIVTDPRGSIILANPAACKLFK-----LQCGDMLR---SRPGRKVTNAQLLDLFER 308 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEA 561 + S K + + VL+ S +P + ++ + T + D R Sbjct: 309 VRLSSKPIVKEEMLVMTERGERVLQTSAMPVIKDSYSDGTVFVLNDITR----------- 357 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 LR + I+ FV VS+ELR+PLT+I G+T+ L G+L+ ++ ++ I S Sbjct: 358 LRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLE---GALDDREDAMNFLRIILQESEQ 414 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+ND+LDL+ +++G ++ ++ + + D++ + + + +I +++ G L Sbjct: 415 LTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPP 474 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 AD+ L + +L NA+ + + S I A D + V++NG+ IP+ + Sbjct: 475 VFADKDYLEIVVRNLLDNAIKYVADDSGRIRIIAFPANDMVRLEVEDNGAGIPQKDLGRI 534 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F RF V A Q G GLGLSIV+ + H G+V + S + + IP Sbjct: 535 FERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIP 587 >gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 609 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 12/252 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + +T ++ + +TE+ K + + FV +VS+ELR+PLT I +T+ L+ G+L Sbjct: 356 IGITGTIAVLQDVTEQE----KLEASRREFVANVSHELRTPLTTIKSYTEALED---GAL 408 Query: 603 NSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ ++V I + ++ LV D+L L+ +D+ L+ + ++L +V+ + Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSF 468 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719 +M + +IR + + + + DR + Q+ ++SNA+ ++ G T+ + A+ + G Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SVK+ G IP+ +F RF V A G GLGLSI + HGG +++ S Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588 Query: 778 DEGVTTINCRIP 789 E TT+ +P Sbjct: 589 LEKGTTVTFTLP 600 >gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4] gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4] Length = 464 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA+ + +L++ +E + F ++S+ELR+P+T + G++ +L+ + + +++QY+E Sbjct: 221 RAINDLAFSLQRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRWKT-EEERNQYLEI 279 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I +T L LV+D+ DLA ++ G L + + +N+++ V + A K E N++I+ Sbjct: 280 IDHEATRLTYLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYR 339 Query: 672 --ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +SD + D RL Q+ ++ NA+ ++ +GS I + D + V++ G Sbjct: 340 GGLSDKDDSIVLGDPLRLEQVLINLVENAIKYTKEGSITIYTVSNDE-NIKIKVRDTGIG 398 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + E+ +F RF V + G GLGLSIV+ I LH G + + S+ Sbjct: 399 MEEEELPYIFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVEST 448 >gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] Length = 786 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AER L +K A A++ K+ F+ ++S+ELR+PL I+GF +L+++ GSL S + + Y Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL++++DIL ++ ++A +KL I L L +A + ++ I Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSI 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + G L +AD + L QI I+ NA+ F+ + V L+ NG + + G Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785 IP+ + F + +N R +G GLGL+I S LHGG + I S+EG+ T + Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743 Query: 786 CRIP 789 R+P Sbjct: 744 VRLP 747 >gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] Length = 558 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ D + V + G I +D +F Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 552 >gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 914 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 11/225 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL + ++ K+ F+ +S+E+R+PL ++G LLK ++L + Q YV+ I++S + Sbjct: 398 EALLQ-NQAKSRFLAKMSHEIRTPLNGVLGMLQLLKETRL---DHSQRFYVDTIASSGST 453 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L+ ++NDILD A +++G + L + L ++L++ + E +R+ + + +G Sbjct: 454 LMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPR 513 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 D RL Q+ + +LSNA+ F+S+G + + R D F V ++G I ++ Sbjct: 514 HIQGDPTRLKQVLTNLLSNALKFTSEGQVRLDVSRRRKSDGSEHLYFGVSDSGIGIRQEA 573 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +F F RR G GLGL+I + + + GGH+ + S+ Sbjct: 574 QARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQST 618 >gi|163791202|ref|ZP_02185619.1| Two-component system, sensor histidine kinase [Carnobacterium sp. AT7] gi|159873533|gb|EDP67620.1| Two-component system, sensor histidine kinase [Carnobacterium sp. AT7] Length = 378 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 125/235 (53%), Gaps = 4/235 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + Sbjct: 140 EEERRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEERRYKS-EEELLKYTHTAYTKAKQ 198 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+ + V LN S + LL ++ + + ++ I+V++ + Sbjct: 199 MKVLVEDLFEYTKVRQTTTPLNLSEFDMVQLLEQLVADFELEAEKRHMEIEVVTSYESIQ 258 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++L+++F+ ++SNA+ + G + ++ + + I SV N+G IP++ +F Sbjct: 259 MEADTEKLVRVFNNLISNALKYGKDGKKIFIEVQKVGKEAIISVNNDGLPIPQESLNQLF 318 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +RF V + + G GLGL+I +S + LHGG++ +SSD +T +P K+ Sbjct: 319 DRFYRVEESRSQETGGTGLGLAIAQSIVALHGGYIY-ASSDTELTRFVMHLPLKQ 372 >gi|160899841|ref|YP_001565423.1| histidine kinase [Delftia acidovorans SPH-1] gi|160365425|gb|ABX37038.1| histidine kinase [Delftia acidovorans SPH-1] Length = 286 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E LRKA E+K+ F+ ++S+E R+P+ I LL G L ++Q++ V +I ++ Sbjct: 41 QAEKLRKATELKSHFLSYMSHEFRTPIGAIRSNARLLLDHVDGPLTTEQTRQVGFIQETA 100 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675 +VND+LDLA ++AG ++++ + DL ++ K +N+ + ++ + G Sbjct: 101 AEFSEMVNDLLDLAKIEAGRLEISPGWFEMMDLFAALRGMF--KAMADNVELSLVFEEPG 158 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPED 733 L F D ++L QI +SNA+ F+ +G + +A GD + FSV + G I + Sbjct: 159 DLPRFYTDNRKLSQILRNFISNALKFTPQGEIKV--SAELVGDMLVKFSVADTGIGIASE 216 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 ++FN F V + + + RG GLGL++ + L GG V + S+ +T + +P+ Sbjct: 217 FHDAIFNDFTQVDSPIQKRLRGTGLGLALSKQLAQLLGGWVEVQSALGEGSTFSVIVPA 275 >gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium wasabiae WPP163] gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium wasabiae WPP163] Length = 951 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 498 ---SLPQDANRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + S D RL Q+ S +LSNA+ F+ G V RD Sbjct: 555 YLPLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIVFEVGCRD- 613 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 674 ESEPGLGSLFGVRIP 688 >gi|34498055|ref|NP_902270.1| two-component sensor/regulator [Chromobacterium violaceum ATCC 12472] gi|34103910|gb|AAQ60270.1| probable two-component sensor/regulator [Chromobacterium violaceum ATCC 12472] Length = 924 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 546 TDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 T R + E +EA RK E+ K+ + +S+E+R+PL ++G LL+ S + Sbjct: 371 TLEARVHKRTQELDEA-RKIAELMSRRKSEHIASISHEIRTPLNGVVGALSLLQRS---T 426 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q + ++ S+ LL ++ND+LD + ++AG ++L+Y ++ + +L++V +I + Sbjct: 427 LTLQQRELIDTARFSTDYLLIIINDLLDFSHIEAGQLELSYESVSVLQVLDQVMLTIHLR 486 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ ++V ++D DR R+ QI +L NA+ F+ G +L A + GD + Sbjct: 487 AQEKDLALRVLVTDEVPAEMAMDRMRVQQILINLLGNAVKFTESGHISVLVARK--GDML 544 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S+++ G I ED +F FV + H G G GLGL+I NL GG + + S Sbjct: 545 AISIEDTGPGIAEDKQLDIFRPFVQVHMHNG---GNGLGLTIASRLSNLMGGEILLQS 599 >gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 641 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 7/236 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAA 495 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + KLG VADRQRL+Q+ +LSNA+ ++ V ++ + + Sbjct: 496 DANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G I + +F F G GLGL++ +S + + G +S+ ++ Sbjct: 555 SVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNT 610 >gi|229096517|ref|ZP_04227488.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29] gi|228686723|gb|EEL40630.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29] Length = 392 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT + L KQ + Sbjct: 160 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 218 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS + L++LV ++LD + + + L + L D+L E + + +I+ Sbjct: 219 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 275 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+ + + DR RL QIF I+ NA+ +S + TV ++A ++ G + VK+ G I Sbjct: 276 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 335 Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LH G +SI S + TTI ++P Sbjct: 336 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 391 >gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16] gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16] Length = 511 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N D +RA R N+A +++D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y IS + LL LV+D+LDL+ +++ M ++ L LL E+ Q ++ Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENRIP 381 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722 + ++ ++ D RL Q+ +L NA F+ KG I A D+G+ I+ Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP D K VF RF Q G GLGLS+ ++ + GG +++ S Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492 >gi|227514220|ref|ZP_03944269.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931] gi|227087416|gb|EEI22728.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931] Length = 380 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%) Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567 G L ++ LE+ I P N Q ++T VN +T +++ ERA +EK+ Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620 K+ + +VS++LR+PLT+IIG+ LG + Q Q E I S I + Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 NLV D+ + V +N T+ L LL +V S + + + I V + S Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVTCEPSPLSI 261 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD ++L ++FS +++NA+ + S + L A + + +V ++G IP + K +F Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFE 321 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V ++ G GLGL+IV+S + LH G V+ + SD+ T +P K+ Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374 >gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 1028 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 7/249 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 M T ++VTD++ E AL + + A+ K+ F+ ++S+E+R+PLT I+G TDLL+ Sbjct: 499 MGTVMDVTDAIEREEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGHTDLLREEA 558 Query: 599 LGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + S + Q Q +E I + LL ++NDILD++ ++AG +++ L LL +V+ Sbjct: 559 VRSAAPRDQVQGLETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDLPALLLDVESL 618 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RD 715 + + + ++ + S V AD R+ QI ++ NA+ F++ G I R Sbjct: 619 MRARAAAKGLTLETRLRNTVPSRVFADPTRVRQILMNLVGNAVKFTAYGRVTIEAGVERA 678 Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 G +V + G + E +F F+ RR G GLGL+I L GGH Sbjct: 679 EGQEWLTITVDDTGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICRRLATLMGGH 738 Query: 772 VSISSSDEG 780 V + + G Sbjct: 739 VRLVHTAPG 747 >gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 602 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 131/254 (51%), Gaps = 17/254 (6%) Query: 549 VRAERALTE----KNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 V +R LTE K EA A+ K F+ +S+E+R+PL ++G ++ Sbjct: 193 VELQRELTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPLNGVLGMAQIMAA-- 250 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G L+ Q + ++ ++AS LL+++N ILD++ ++AG M++N + L+ L+ ++Q Sbjct: 251 -GELSPDQRRRLDTVTASGQSLLSVINAILDISKIEAGKMEINPAPFDLSAHLDALRQLY 309 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + I++G G + D RL Q+ S ++SNA+ F+ G TV + D+ Sbjct: 310 GGLARDKELDFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFTDVG-TVRVFVEGDDK 368 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + V ++G+ IPE +F +F RR G GLGL+I ++ L GG +S S Sbjct: 369 TIVARVTDSGAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGLAICKTLSELMGGSISYS 428 Query: 776 SSDEGVTTINCRIP 789 +++ G +P Sbjct: 429 TAEGGGACFTVTLP 442 >gi|256783472|ref|ZP_05521903.1| two-component system sensor kinase [Streptomyces lividans TK24] Length = 498 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + F VS+ELR+PL + TD+L G L+ + V IS +T L Sbjct: 253 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 311 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+++++ DAG L+ I DL +++++AT+ ++ + + + G+L V Sbjct: 312 ALVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 368 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +RL I + +++NA+ + + L A R + +V++ G IPE + V Sbjct: 369 -DPRRLDVIVANLVANALRHGAPPVRLYLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 427 Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF +A R + G GLGLSI + LHGG V ++ EG +P Sbjct: 428 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 479 >gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] Length = 511 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N D +RA R N+A +++D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y IS + LL LV+D+LDL+ +++ M ++ L LL E+ Q ++ Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENRIP 381 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722 + ++ ++ D RL Q+ +L NA F+ KG I A D+G+ I+ Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP D K VF RF Q G GLGLS+ ++ + GG +++ S Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492 >gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 618 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 542 FVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + +SVR E AL E KA+ K+ F+ +S+ELR+PL+ I+GF L+++ Sbjct: 204 LIGTDNSVRKQVEVALKEAMAVAEKANLAKSDFLSSMSHELRTPLSAILGFAQLIESGTP 263 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 S Q + V+ I + LL L+N+ILDLA +++G + L+ + L +++ E + + Sbjct: 264 QPTPS-QKRSVDQILQAGWYLLELINEILDLALIESGRLSLSLEPVSLAEVMLECETLVE 322 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ + IR+ L FV ADR RL Q+ +LSNA+ +++ G TV+LK + Sbjct: 323 SQAAKRGIRV-TFPQFSLPCFVKADRTRLKQVLINLLSNAIKYNTSGGTVVLKCVNVSPQ 381 Query: 719 FI-FSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 I V++ G + P + + FNR A+ Q G G+GL + + I L GG + + Sbjct: 382 RIRICVEDTGEGLNPAKIAQLFQPFNRLGQEANTEQ--GTGIGLVMTKRLIELMGGAIGV 439 Query: 775 SS 776 S Sbjct: 440 ES 441 >gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1095 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 12/244 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L + E A K+ F+ ++S+E+R+PL ++G L +T++L +++Q +V+ Sbjct: 704 ERDLLKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQTTRL---DAEQRDFVD 760 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 AS LL ++NDILD + ++AG +++ L L++V + + + + + V Sbjct: 761 TALASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEARDKGLTLAV 820 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD----FIFSVK 724 I G + R+ QI ++ NA+ F+ +GS I D D +FSV Sbjct: 821 DIWPGTPEHLTGGKSRVRQILFNLVGNAIKFTDQGSVTISVCPLGPDPRDGRTRLLFSVS 880 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP+ M +F F V ++ + +G GLGL IV+ I L GG + I S T Sbjct: 881 DTGIGIPDAMVDLIFEPFTQVDGSYMRRHQGAGLGLGIVKRLIGLLGGSMCIDSKTGRGT 940 Query: 783 TINC 786 T++ Sbjct: 941 TLHV 944 >gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC 74-1112] Length = 787 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ + E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 277 AICVLVDVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 336 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 337 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 393 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 394 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 451 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 452 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 511 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 512 VDSEPGMGSQFTVRIP 527 >gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 768 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 15/261 (5%) Query: 542 FVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 F+ + + + AE+ + K +AL A + K+ F+ ++S+E+R+PL I+G LL++ Sbjct: 364 FMVIVEDITAEKISELELIAAKEQAL-AASKSKSEFLANMSHEIRTPLNGIMGMLQLLES 422 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +S+Q++Y++ S L +L+ DILDL+ ++ G + L LN L+ +V Sbjct: 423 T---DTDSEQTEYIDIALNSGRNLTSLITDILDLSRIEQGYVALENHGFNLNHLVEDVIN 479 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKA 712 + T++ N+ IK D + V D RL QI I N++ F+S+G T+ Sbjct: 480 TFITELTSKNLEIKTSIDKSIPDLVYGDSGRLRQIIFNIFGNSVKFTSRGCISLTITSLI 539 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 + + + + G IPED +F F V + + GVGLGLSIV+ + + GG Sbjct: 540 NNNIINIFIEISDTGIGIPEDKLDEIFVPFTQVDGSLTRKYGGVGLGLSIVKKLLLIMGG 599 Query: 771 HVSISSSDEGVTTINCRIPSK 791 ++I ++D+G T IP K Sbjct: 600 SITIDNNDDGGITTCIAIPFK 620 >gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21] gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21] Length = 1361 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 5/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L + + L +A +K+ F+ ++S+ELR+PL +++ + +L L + Y Sbjct: 567 RHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGSSRLTEDEKGY 626 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + LL+L+NDILDLA +++G ++ ++ L + EV ++ E I + Sbjct: 627 LSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEVVDGLSVLAREKGIAL 686 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728 + + L + V D +RL Q+ ++ NA+ F+++GS TV L A + +F+ V++ G Sbjct: 687 SLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAEGSVTVRLDA--EGEEFLIEVEDTGI 744 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I +S+F+ F R G GLGL+IV+ L GG VS+ S + Sbjct: 745 GIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGEGSVFTL 804 Query: 787 RIP 789 R+P Sbjct: 805 RLP 807 >gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 962 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL S L +Q ++ I SS Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLSTIRKSS 337 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 ILL ++NDILD + ++AG + L+ L D++ EV +A H N+ + ++ + Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDV 397 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729 + + D R+ Q+ + +++NA+ F+ G V+L+A+ + D S+ ++G Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEEEDKESNRITLRLSITDSGVG 456 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +S+FN F R+ G GLGL+I + + GG + + S Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505 >gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 30/353 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 ++ GV RI L NPA L T + + HI + L Sbjct: 257 MTSGVIFISEQRRIMLVNPAVEKLLGTAGHEIVGKLHI-----------EAGKSFGLSQY 305 Query: 503 IITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 I D K Q + + +L+ + P ++N R + Sbjct: 306 IDRCLDRSEKFRQEVHIYYPQERILDVNFAP---------YINFKGESRGVVVVLHDITD 356 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 +R+ +++++ FV +VS+ELR+P+T+I GFT+ L G++ +++ +++ IS S Sbjct: 357 IRRLEKMRSEFVANVSHELRTPITSIKGFTETLLE---GAMQDEETCRNFLQIISDESER 413 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L ++ DILDL+ ++ + L+ + L DL++ + + + I + S Sbjct: 414 LYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDIW 473 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D+ L QI +L+NA+ ++ +G + +K D+ + V + G IPE +F Sbjct: 474 LMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTEADSENITIQVMDTGIGIPEKELTRIF 533 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGL+IV+ + NLH GH+S+ S + TT +P Sbjct: 534 ERFYRVDKARSRDSGGTGLGLAIVKHLVENLH-GHISVESKEGRGTTFTVTLP 585 >gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T] gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T] Length = 2109 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ER E+ E R+ A K+ F+ +S+E+R+P+ I+G LL S L Q+ Sbjct: 1596 ERKAKERAELARERAEAASRAKSDFLAAMSHEIRTPMNGILGMAQLLARS---GLAPGQA 1652 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++V+ I AS + LL +++D+LD + ++AG + L + + L ++ +AT + + Sbjct: 1653 EWVDAIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATMSAQKGL 1712 Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 +++ D L G + DR+ L QI + NA+ F+++G + L A Sbjct: 1713 VLRLEIDPALPGGVLGDRRALHQIVLNLAGNAVKFTARGFVAVRARCLPARAGRCRLGLE 1772 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V+++G I E+ + +F F RR G GLGL+I ++L GG + + S Sbjct: 1773 VEDSGIGIAEEAQRRIFTEFTQADGSITRRFGGTGLGLAICRRLVDLQGGSLGVRSRPGE 1832 Query: 781 VTTINCRI 788 +T +C + Sbjct: 1833 GSTFSCEL 1840 >gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 761 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ +++KN FV VS+ELR+PLT+I G L+ LG + + + ++ L + Sbjct: 518 KRIEQMKNEFVSAVSHELRTPLTSISGSLGLILNGMLGEVPVRARDMLVIAHKNALRLAH 577 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG--S 679 L+ND+LD+ + AG KL++ + +L V+QSI + + + N + ++ D G S Sbjct: 578 LINDLLDMEKLAAG--KLDF-YMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDAS 634 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D QRL Q+ + LSNA+ FS +GS VIL+ + +V + G I ++ +F Sbjct: 635 VNIDAQRLQQVLTNFLSNAVKFSPEGSRVILRMRVQGRELCLAVTDQGPGISDEFRTRIF 694 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINC 786 +F + QR G GLGL+I + + GG++ S EG T C Sbjct: 695 QKFSQADASSSRQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYAC 744 >gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] Length = 806 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 139/265 (52%), Gaps = 28/265 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GVIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL +I+GF+ LL + ++ +Y++ + ++ +LL LV+DILDL+ +++ Sbjct: 598 MSHEIRTPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIES 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSK 693 G S + +N+ ++ +S+ K+ E + + K + D + D+ R +Q+ + Sbjct: 655 GTFDFVRSDLDVNESCMKIIKSLEMKVPETVDLVFEKYMPDCHI---YTDKNRFMQVITN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +G+ + + F V++ G IP++ S+F RFV Q G Sbjct: 712 FINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGVGIPKEKIDSIFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSD 778 GLGLSI +S ++ GG + + S++ Sbjct: 770 TGLGLSICKSLVSQMGGKIGVESTE 794 >gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp. CCY0110] Length = 389 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 12/248 (4%) Query: 552 ERA--LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 ERA L ++ +A +A+ +K+ F+ +S+ELR+PL I+G++ +L++ L ++ Sbjct: 145 ERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGILQSKNLDEAEIRR 204 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E I ++ +L+ D+LD++ + G M+L+ I L ++ ++ N Sbjct: 205 A--LEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEAAIDTLKPAADAKN 262 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 IR++ + D + D +RL QI +LSNA+ F+ K V + + N V + Sbjct: 263 IRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQQINSHVEIVVADT 322 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-T 782 G I + VF RF A+ R G+GLGL+IV + LHGG V S EG Sbjct: 323 GQGISAEFLPYVFERF-RQANTSMTRSFGGLGLGLAIVRQLVELHGGTVQAESPGEGQGA 381 Query: 783 TINCRIPS 790 T ++PS Sbjct: 382 TFTVKLPS 389 >gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 4/244 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608 R+E AL A K+ F+ ++S+ELR+PL IIGF++ ++ + G + K + Sbjct: 30 RSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQHIAASGKPSEKTGE 89 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y +I+ + LLN+++DILD+A +++G L + +L++ I ++ E Sbjct: 90 YATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDACIVLIEPRIREKKQV 149 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727 +++ +D L D +R+ Q+ +LSNA F+ +G ++L A + +G +V + G Sbjct: 150 LEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVADTG 209 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + ++ F V ++ G GLGL I + LHGG I S TT+ Sbjct: 210 IGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGEFQIFSEPGKGTTVF 269 Query: 786 CRIP 789 +P Sbjct: 270 FTLP 273 >gi|119493632|ref|ZP_01624281.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119452552|gb|EAW33736.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 936 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 555 LTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L+EK + L+KA ++ K+ F+ ++S+ELR+PL I+GF L +L Q Sbjct: 462 LSEKFQELQKAKQDAEVANQAKSRFLANMSHELRTPLNAILGFIQLFDYQ--SNLTQTQQ 519 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y++ I S+ LL L+N++LDLA ++AG +N + L+ L N++ + + + + Sbjct: 520 EYLQTIRYSAEHLLELINEVLDLAKIEAGKTIVNSAHFDLHLLFNQLYAMFSQRCEAHGL 579 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725 ++V + + ++ D ++L QI ++ NA+ F+ GS TV + + V + Sbjct: 580 FLQVHWEDNVPQYLHGDDRKLRQILINLVGNAVKFTQAGSITVQARCLSNQRRMQIDVTD 639 Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I PED+ +++F F H + G GLGL+I + F L GG++++ S TT Sbjct: 640 TGQGIAPEDL-EAIFASFTQTQHN--QEGTGLGLTISQQFARLMGGNLTVQSQFGQGTTF 696 Query: 785 NCRIP 789 IP Sbjct: 697 TLEIP 701 >gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 12/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++T+ +R E + E A+ K+ F+ ++S+E+R+P+ ++G DL S + L Sbjct: 821 ADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDL---SLMQKL 877 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ +Y S+ LL+++ DILDL+ ++AG M+L + DL+ + +A Sbjct: 878 PTRVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTA 937 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715 + +++ D + + D RL Q+ + ++SNA+ F+ KG ++ RD Sbjct: 938 ADKGLKLLHAVDADIPPLLCGDPVRLRQVLANLVSNAVKFTHKGRVLVNVERTGHDLPRD 997 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +FSV + G IP + +F F A + G GLGL+I + + + GGH+ Sbjct: 998 EVRLLFSVSDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIG 1057 Query: 774 ISS 776 + S Sbjct: 1058 VES 1060 >gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 746 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 351 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 408 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 409 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 466 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 467 DGNIELKELPYLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585 Query: 781 VTTINCR 787 CR Sbjct: 586 -----CR 587 >gi|163842855|ref|YP_001627259.1| integral membrane sensor signal transduction histidine kinase [Brucella suis ATCC 23445] gi|163673578|gb|ABY37689.1| integral membrane sensor signal transduction histidine kinase [Brucella suis ATCC 23445] Length = 609 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + SNA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLASNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|163736145|ref|ZP_02143564.1| sensor histidine kinase [Phaeobacter gallaeciensis BS107] gi|161390015|gb|EDQ14365.1| sensor histidine kinase [Phaeobacter gallaeciensis BS107] Length = 892 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608 R R L E NE L + + K++F+ VS+ELR+P+T+I F+++L+ T L S S+ Sbjct: 649 RTARKLQETNEKLTQLSQQKDAFLSQVSHELRTPMTSIRAFSEILRDTENLAS--QDHSR 706 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I + L L+ND+LDL+ ++ G + LN S L D+L+ ++AT + + + R Sbjct: 707 YAGIIHDEAQRLTRLLNDLLDLSVLENGQVSLNISAGRLGDVLD---HAVATALADGSAR 763 Query: 669 IKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKN 725 ++V D +D RL Q+F +++NA + + + AR +G ++F + Sbjct: 764 LRVERDAATDDMRLSSDLDRLAQVFINLIANADKYCTAADPQLRITARQSGHWLFIDFID 823 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 NG IP ++F +F S + G GLGL+I + GG V+ S + G Sbjct: 824 NGDGIPPAFRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVAYLSGEVG 877 >gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 903 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 13/223 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT LLKT+ L Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTA----LTPSQTDYMQTIEKSARNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILD + ++AG ++L + L D LNE + H+ + + + D ++ ++ Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYL 400 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI---FSVKNNGSSIPEDMC 735 D RL Q+ + + NA+ F+ +G+ I + NG+ + +++ G I E+ Sbjct: 401 TGDPMRLQQVLTNLAGNAIKFTERGNVDVHIEQTGGSNGNKVRLNVLIRDTGIGISEEQQ 460 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F F RR G GLGL I + + GG + S Sbjct: 461 RQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 503 >gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 610 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 8/234 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621 K ++ + FV +VS+ELR+PLT I + + L G+L+ +Q ++V I + ++ Sbjct: 372 KLEQSRREFVANVSHELRTPLTTIRSYAEALDD---GALDERQLADRFVSVIRNETERMI 428 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L L+ D+ + L + +LL E A + + IR +V D +G+ Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR + Q+ ++SNA+ ++ G ++L A + + SV+++G IP+ +F+ Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLGRIFD 548 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A G GLGLSI + HGG +++ S TT+ +P+ + Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLPAPD 602 >gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 746 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 351 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 408 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 409 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 466 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 467 DGNIELKELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585 Query: 781 VTTINCR 787 CR Sbjct: 586 -----CR 587 >gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 919 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 10/240 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ YVE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 + L++++NDILD A +++G + L L +LL++ + + E + + + D G Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731 D RL Q+ +LSNA+ F+++G + R D G ++SV ++G I Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K++F F RR G GLGL+I + + GG + +SS T + +P Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632 >gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 775 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 496 DGNIELKELPYLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon] Length = 1036 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 13/246 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDL 593 T + V V + L ++ E L K D++K +F+ +E+RSPL I+G+ L Sbjct: 780 TPVKIVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 839 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ G LN KQ +YV I S++ L L+ +L++ ++AG +L+ + + +++N Sbjct: 840 LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 896 Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711 V + + I V+ +G D+Q++ IF ++SNA+ ++ KG I+ Sbjct: 897 VLERFGPQADAKKQTISAVVPEGT--EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVV 954 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGG 770 R G V + G IP++ F R F+++ ++ G+GLGL+IV+ ++ LHGG Sbjct: 955 EDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGG 1013 Query: 771 HVSISS 776 V ++S Sbjct: 1014 EVWVTS 1019 >gi|229115491|ref|ZP_04244897.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3] gi|228667904|gb|EEL23340.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3] Length = 444 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT + L KQ + Sbjct: 212 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS + L++LV ++LD + + + L + L D+L E + + +I+ Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 327 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+ + + DR RL QIF I+ NA+ +S + TV ++A ++ G + VK+ G I Sbjct: 328 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 387 Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LH G +SI S + TTI ++P Sbjct: 388 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 443 >gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] Length = 558 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 656 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 13/242 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E L + + + K F+ +S+E+R+PL IIG +LLK Sbjct: 257 DITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPLNGIIGIANLLKLKH----T 312 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +YV + S+ LL L+NDILDL +++ ++L + + + +L+ +K + Sbjct: 313 MDQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAEVNIFELVRNIKNQFKSLAE 372 Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 I +K I D +AD RL QI + ++SNA+ F+ G+ I + + + Sbjct: 373 AKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFTESGAVTITLSLVALTANKAN 432 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 FSVK+ G IPE++ +++F F + HR + G GLGL+I + + LH G + + Sbjct: 433 VHFSVKDTGMGIPEELHETIFESFKQVQQDVHR-KHTGTGLGLAITQKLVELHDGRILLK 491 Query: 776 SS 777 S+ Sbjct: 492 ST 493 >gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1442 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 10/227 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+P+ I+G T LL + SL+ +Q +V+ I +LLNL+NDILD + Sbjct: 819 FLATISHEIRTPINAILGMTSLLLDT---SLDPQQQDWVQTIRYGGEVLLNLINDILDFS 875 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690 +++ ++L L L+ E+ +A + ++ + D L + + D RL QI Sbjct: 876 KIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQI 935 Query: 691 FSKILSNAMDFSSKGSTVILKAA--RDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VS 744 + +LSNA+ F+ +G V+ A RD V++ G IP + +F F V Sbjct: 936 LANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKPFSQVD 995 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 ++ Q G GLGL+I + L GG + + S +T RIP K Sbjct: 996 SSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLK 1042 >gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 548 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 8/233 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTI 619 A R DE+ S VS+ELR+PL I+GF DLL G N KQ +YVE I + T Sbjct: 287 ACRSRDEMLAS----VSHELRTPLNAIVGFADLLANEMFGKFANDKQREYVEVIREAGTH 342 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL++VN ILD++ V +G + D + + ++ +K G +G+ Sbjct: 343 LLSVVNAILDVSKVQSGAYGVEAKPFHFEDAVRLCMAMTTHQAQAKSVELKADIAGDIGT 402 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D+ + Q+ +LSNA+ F+ G V + A R F+V + G I + + V Sbjct: 403 VRCDKNAVQQVLINLLSNAVKFTPSGE-VKVTAHRSGDRLEFTVSDTGIGISAEDLELVG 461 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V N + + G GLGL++V+ + L GG +SI S+ T ++ +P+ Sbjct: 462 TPFMQVRNDYTRKCEGTGLGLALVKGLVRLQGGGLSIESAPGRGTRVHVSLPA 514 >gi|329909928|ref|ZP_08275149.1| sensor histidine kinase/response regulator [Oxalobacteraceae bacterium IMCC9480] gi|327546367|gb|EGF31381.1| sensor histidine kinase/response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 500 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 10/246 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + + L EA A+ K F+ +S+ELR+PL +I+G+ +L+ Sbjct: 17 QTRLLLQEIAAHEKTDAELQRAKEAAESANLAKTRFITGMSHELRTPLNSILGYAQILQF 76 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ + ++ I S LL+L++ +LD+A ++AG M+L+ + L L ++ Q Sbjct: 77 DP--AMPPHRKDAIDVIHRSGNHLLSLIDGLLDIAKIEAGKMRLDTDELALPAFLEQIVQ 134 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714 A E + + DG+L V AD +R+ QI +L NA+ F+ G+ T+ L R Sbjct: 135 MFAPLAAEKGLAFAFVCDGRLPGVVRADHKRVRQILINLLGNALKFTDTGAVTLRLNYVR 194 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 D FS+++ G + D + + F R VS R G GLGL+I ++ GG Sbjct: 195 DMAH--FSIEDTGIGMTADEAERIFFPFERTVSADLRAA-AGTGLGLTISNMLTHIMGGD 251 Query: 772 VSISSS 777 ++++S+ Sbjct: 252 LTVTST 257 >gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I ++ +F Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] Length = 929 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT+ L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIENSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 N++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLKIDPKVPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ +G+ +V L++ + D+ + F V++ G I E Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTGIGISERQQS 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 608 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 12/250 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T S+ + +TE+ + R E FV +VS+ELR+PLT I + + L G++ Sbjct: 357 ITGSIAVLQDVTEQEKLERSRKE----FVANVSHELRTPLTTIKSYLEALGD---GAIED 409 Query: 605 KQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +++ + ++ LV D+L L+ +D+ L + ++D+L EV A + Sbjct: 410 PQLSERFLGVTRNETERMIRLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQS 469 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 + IRI V D ++GS DR ++ Q+ +LSNA+ +++ V ++A R + D++ Sbjct: 470 RQRKIRIDVSVDARVGSISIDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEI 529 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 SV++ G IP+ +F RF V A G GLGLSI + HGG + + S Sbjct: 530 SVEDTGIGIPKKDLSRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYN 589 Query: 780 GVTTINCRIP 789 T ++ +P Sbjct: 590 VGTRVSFTLP 599 >gi|110834168|ref|YP_693027.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis SK2] gi|110647279|emb|CAL16755.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis SK2] Length = 1222 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 15/239 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +K L + K+ F+ +S+ELR+PL +I+ ++ L +K G+L KQ ++ + I ++ Sbjct: 541 DKIRELEMSSRYKSEFLSTMSHELRTPLNSILILSNALAQNKKGNLEEKQVEHAQVIHSA 600 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 T LL+L+NDILD++ ++ G M + + +++ +++ A N+ KV + D Sbjct: 601 GTDLLSLINDILDISKIEEGKMDVIIDDLSPTEIVEHFRRNFAHVAESRNLDFKVELGDT 660 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSV 723 F DRQRL QI +LSNA+ F+ GS ++ D + + F+V Sbjct: 661 LPDHFYTDRQRLEQIIKNLLSNALKFTEHGSVMLSLTQPDVSETLPSRHLVPGQTLKFAV 720 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G+ I + K +F F R+ G GLGL+I L GG + + S EG Sbjct: 721 TDTGTGIAREKQKLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLYSDGEG 779 >gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 929 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%) Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489 K GET D LS V V+ P+ R K+ + + + EE I AT Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 NE + W ++T F+ E G +E++ + Y I L + ML Sbjct: 651 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 692 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E E D +K++F+ ++S+E+R+PL I+GF+ LL ++ ++ +Y Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ +LL L++DILDL+ ++AG + Y +N L ++ +S K+ + + Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQG---V 799 Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ D + ++DR RL Q+ S ++NA+ F+S GS + ++ G F V + G Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858 Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I ++ +F RFV S H G GLGLSI +S + GG + + S + Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 907 >gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 1468 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 106/379 (27%), Positives = 171/379 (45%), Gaps = 25/379 (6%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 ++T ++ K N + + ++ G+ V G+I N F LWK ++ L G Sbjct: 548 DITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTL-IG 606 Query: 478 THIRNIAATCSRYYNES---DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534 IA +Y +S D I + D L TL + V E +P+ Sbjct: 607 RDDSEIA-----HYAKSQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMM 661 Query: 535 NAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 + +L +F +VT+S++ L E A + K+ F+ +S+E+R+P+ ++G Sbjct: 662 SEGGVLGRVWSFRDVTESMKIRSELMLAKEGAELAVKAKSEFLASMSHEIRTPMNGVLGM 721 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL +KL Q + V +S+ LL L+NDILD + +DAG ++L L + Sbjct: 722 LGLLLNTKLSDF---QRRRVSIAQSSAESLLTLINDILDYSKIDAGKLELENLDFNLRGM 778 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L E + +A + ++ + + G S V D RL Q + + NA+ F+ +G VI Sbjct: 779 LGEFAEGMAHLAQDKDLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAIKFTKQGEVVI 838 Query: 710 LKAARDNGDFIF-----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 D SV + G I ED S+F+ F R+ G GLGL+IV+ Sbjct: 839 KAELVPCDDETLWRLKCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYGGTGLGLAIVD 898 Query: 763 SFINLHGGHVSISSSDEGV 781 NL GG VS+ S+EGV Sbjct: 899 KVCNLMGGSVSV-ESEEGV 916 >gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 749 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 7/237 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ ERAL E + A+ K+ F+ S+E+R+PL IIG + LL ++ L+ Sbjct: 207 DVTERTETERALAEARDLACAANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTE---LS 263 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YV+ + S L +L+ ++LD + ++AG + L+ L L+ + + +A + Sbjct: 264 PEQITYVKAVKTSGDALASLIEELLDYSKIEAGKIDLDAKPFALTALIEDTAELLAPRAQ 323 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 + I D +L + V D RL Q+ + NA+ F+ G ++I++ + F Sbjct: 324 ARQLEIATYVDERLPAHVIGDAARLRQVLLNLAGNAIKFTETGGVSLIVEPGLMPDEIRF 383 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G I + +F F + R G GLGLSI E + GGH+++ S Sbjct: 384 LVSDTGIGIAPEAQARIFREFEQADEQTARNFGGTGLGLSISERIVKRMGGHIALRS 440 >gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] Length = 878 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 5/255 (1%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ F+ + V R + K A++ K F ++S+ELR+PLT I + + Sbjct: 343 SIILFLLIGIMVYIYRTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIIHD 402 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +LNS+Q ++ + + +L LV++ILD V G M+L S L++ + + Sbjct: 403 D--NLNSQQRSMLQIVQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIML 460 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + +I I + + + AD+ ++ +I +LSNA+ ++S+G + L A +NG Sbjct: 461 FSASAQKKHIAISMNAPDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENG 519 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + SV +NG I D +F+RF + G RG G+GL+IV++F LH G VS +S Sbjct: 520 RVMISVADNGCGISSDELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSI 577 Query: 778 DEGVTTINCRIPSKE 792 + +T IP ++ Sbjct: 578 EGKGSTFTIHIPVRQ 592 >gi|229102610|ref|ZP_04233314.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28] gi|228680837|gb|EEL35010.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28] Length = 444 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611 +L ++ + KA+++KN F+ +S+E+R+PLT I G+++ LKT + L KQ + Sbjct: 212 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS + L++LV ++LD + + + L + L D+L E + + +I+ Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 327 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I+ + + DR RL QIF I+ NA+ +S + TV ++A ++ G + VK+ G I Sbjct: 328 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 387 Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LH G +SI S + TTI ++P Sbjct: 388 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 443 >gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] Length = 545 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL +++ + K E I ++V + K S Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQV-NALKGVS 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 428 VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 539 >gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1927 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 16/258 (6%) Query: 533 LPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 LP+ + V + +V +R L + E A+ K+ F+ ++S+E+R+P+ I+GF Sbjct: 1400 LPDQTVIWNGVTIDLTVEKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGF 1459 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 DLL + L + N Q Y+ I+++ LL L+NDILDL+ ++AG ++L Y + L L Sbjct: 1460 CDLL--NHLVTDNRGQF-YLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTL 1516 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + E+ Q + K E I++ + D + + + D RL QI ++ NA+ F+ +G I Sbjct: 1517 IQEIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEEGYVKI 1576 Query: 710 -----LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 +D D I ++++ G I + +F+ F+ + + R+ G GLGL+ Sbjct: 1577 SLNSYHSETQDQEDSITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLA 1636 Query: 760 IVESFINLHGGHVSISSS 777 I + + GG + + S Sbjct: 1637 ITKRLTTILGGKIELYSQ 1654 >gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1060 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EA R A +K F+ ++S+E+R+P+ I+G LL+ G L+ Q V I + Sbjct: 339 QQEAARLA-RVKGDFIANMSHEIRTPMNAIMGLAYLLEQ---GGLDDGQRALVRKIHQAG 394 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL ++NDILD + +++G ++L L ++L+ V ++T + ++ + V S + Sbjct: 395 QALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLELVVSSAPEQ 454 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVKNNGSSIPE 732 + V D RL Q+ + NA+ F+ +G V L+A +D +F V++ G IP Sbjct: 455 AAHLVGDALRLEQVLLNLTGNAIKFTERGEVEVRVELEAEQDGMATLLFRVRDTGIGIPP 514 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + ++FN F RR G GLGL+I +NL GG + ++S Sbjct: 515 EQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTS 560 >gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 915 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 11/249 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q + V++T+ + E + E KA +K+ FV ++S+E+R+PL IIGFT+LL Sbjct: 370 VQVIANAVDITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFTELLL 429 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + +L+ Q QY++ I+ S L +++NDILD + ++ +KLN + + +L++E Sbjct: 430 ET---NLDDTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEELVSEAF 486 Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA 713 +A + + + + D + +V D RL Q+F +LSNA+ F+ +G V+ +K Sbjct: 487 NIVAYSNTKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEGEIVLYVKVL 546 Query: 714 RD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 D F F V++ G I ++ +F+ F ++ G GLGL+I + L Sbjct: 547 ADLSEGKKKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTISNQILEL 606 Query: 768 HGGHVSISS 776 G + + S Sbjct: 607 AGSVLQLES 615 >gi|256377809|ref|YP_003101469.1| histidine kinase [Actinosynnema mirum DSM 43827] gi|255922112|gb|ACU37623.1| histidine kinase [Actinosynnema mirum DSM 43827] Length = 616 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 5/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+A E + F +S+ELRSP+ +++G T LL L +Q + V ++ Sbjct: 212 LEEKSTQLREAAEARTRFWSTISHELRSPVNSVVGLTRLLAAPGSDPLTEEQRRQVTLVN 271 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL LVN+++D A ++G ++ + + L ++ +++ ++ T ++ + V + Sbjct: 272 QAGETLLALVNELMDTAKAESGSLRPRPTPVDLPLVVAQLRGALQTTARTPDVALVVDAP 331 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIP 731 L V D L++I +LSN + F+ +G TV F+V + G IP Sbjct: 332 ADLPVLVTDETMLVRILRNLLSNGLKFTERGEVRLTVRPDGTGPEPGLRFTVADTGIGIP 391 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + VF F V+N + G GLGL + GG + ++S+ T + R+P Sbjct: 392 AEEQQRVFEEFYQVANKLQVGASGTGLGLPYARKLARILGGDLVLTSAPGVGTKVELRLP 451 >gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 453 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 7/235 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 +R+ + I+ FV +VS+E+R+PLT+I GF + L G +N ++ ++ I + + Sbjct: 211 IRQLERIRKDFVANVSHEIRTPLTSIRGFAEALHD---GGINDPKTAREFSGIILSHAER 267 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N+V+D+L L+ ++ G + Y ++ L+ + ++ A + IR V + + Sbjct: 268 LGNIVSDLLHLSELETGKAIMRYGSVSLSRQIAHIRDVYADHARKKGIRFIVQLPEETLT 327 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D ++ + ++ NA+ ++ +G V R+ +F V+++G IP +F Sbjct: 328 YETDEGKMDLVLGNLVDNALKYTPEGGEVFFGGWREGDAIVFEVRDSGVGIPRTEVDRIF 387 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A + G GLGLSIV + + G V ++SS +T R+PS+E Sbjct: 388 ERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFLVRVPSRE 442 >gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 915 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITAN 522 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 641 VDSEPGMGSQFTLRIP 656 >gi|124515321|gb|EAY56831.1| putative periplasmic sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 506 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL E L +K+ FV S+ELR+PLT+I GF +L KLG L +Q + Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L+ LVN +LDL +++G ++ + + L LLN ++ + NI ++I Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRHEAMAEQGNITFRLI 366 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D +L + D ++ QI +L NA F+ G V L+ +R + V++ G I Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +F +F V+ + R G+GLGL+I + G + + + T +P Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486 >gi|30020112|ref|NP_831743.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|229127408|ref|ZP_04256402.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4] gi|29895662|gb|AAP08944.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gi|228656027|gb|EEL11871.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4] Length = 443 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622 KA+++KN F+ +S+E+R+PLT I G+++ LKT L KQ + IS + L++ Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + + L + L D+L E + K E I+ D + Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRM--ELMG 337 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+F I+ NA+ +S K ST+ ++A + G + V++ G I ++ + F Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N H G G+GL+IV+ + LH G +S++S + TTI ++P Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHSGVLSVTSKEGIGTTILIKLP 442 >gi|333023795|ref|ZP_08451859.1| putative sensory box histidine kinase/response regulator [Streptomyces sp. Tu6071] gi|332743647|gb|EGJ74088.1| putative sensory box histidine kinase/response regulator [Streptomyces sp. Tu6071] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 8/243 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EKN+ L + F +VS+ELR+P+ ++I LL L+ +QSQ V + Sbjct: 193 LEEKNQELELVQAYRARFWANVSHELRTPVNSVIALAQLLLDPAGDPLSEEQSQQVSLMR 252 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS + LL LV+++LD+A ++G ++ + + L LL++++ ++ H + + V Sbjct: 253 ASGSTLLALVDELLDVAKAESGRLEPLVADVDLRPLLHQLRGTLRGTAHP-EVTLHVPDH 311 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730 + + D L ++ ILSNA+ F+ G V L+ D F+F V + G I Sbjct: 312 RQSSALHTDEVMLTRVLRNILSNALKFTRTGH-VRLEIEEHGTDADARFVFRVTDTGVGI 370 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE VF F V H+ R G GLGL L GG +++SS+ T + + Sbjct: 371 PEPEIDRVFEEFYQVRGPHQRGRAGTGLGLPYARRLTQLLGGSLTLSSTLGKGTVVVIDL 430 Query: 789 PSK 791 P++ Sbjct: 431 PAR 433 >gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 14/248 (5%) Query: 544 NVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++T AE AL E ++EALR A ++K F+ +S+E+R+P+ IIG T LL + +L Sbjct: 1058 DITSRKAAEHALAEARDEALRAA-QVKADFLATMSHEIRTPMNAIIGMTGLLLDT---AL 1113 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q ++ + + SS LL L+NDILD + ++AG + L + + + +A + Sbjct: 1114 TKEQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQA 1173 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + + + D + + V D RL QI ++ NA+ F++ G V L R+ + Sbjct: 1174 QSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAAGE-VFLHVTRETQGGLD 1232 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F++K+ G IPE + +F+ FV RR G GLGL+I + ++ G + + Sbjct: 1233 LLRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVE 1292 Query: 776 S-SDEGVT 782 S S +G T Sbjct: 1293 SHSGQGST 1300 >gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] Length = 571 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLP 565 >gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 862 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 135/254 (53%), Gaps = 12/254 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ AE L + A++ K+ F+ ++S+E+R+PL ++G +L+ ++G L+ Sbjct: 455 DISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEIRTPLNGLLG---MLQLVRMGDLD 511 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +++SQY++ S LL ++NDILDL+ +++G +L ++ L+ V ++ Sbjct: 512 AERSQYLDVAMNSGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETFRFPAR 571 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD 718 + + V +D + F+ AD+ R+ QI ++ NA+ F+ G I + + G Sbjct: 572 SKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAVKFTLAGEIRISLSMPFQTGNRGQ 631 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI-S 775 V + G IP D ++F FV S A + + G GLGLSIV+ + GG V + S Sbjct: 632 MEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGSGTGLGLSIVKRIVGFMGGRVRLDS 691 Query: 776 SSDEGVT-TINCRI 788 + EG T T++ ++ Sbjct: 692 TPGEGTTLTVSVKV 705 >gi|289767350|ref|ZP_06526728.1| two-component system sensor kinase [Streptomyces lividans TK24] gi|289697549|gb|EFD64978.1| two-component system sensor kinase [Streptomyces lividans TK24] Length = 493 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + F VS+ELR+PL + TD+L G L+ + V IS +T L Sbjct: 248 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 306 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+++++ DAG L+ I DL +++++AT+ ++ + + + G+L V Sbjct: 307 ALVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 363 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +RL I + +++NA+ + + L A R + +V++ G IPE + V Sbjct: 364 -DPRRLDVIVANLVANALRHGAPPVRLYLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 422 Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF +A R + G GLGLSI + LHGG V ++ EG +P Sbjct: 423 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 474 >gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 810 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 15/258 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +VT R E+AL + A+ K+ F+ +S+E+R+P+ ++G LL ++KL Sbjct: 266 SMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVMSHEIRTPMNGVMGMAALLASTKL- 324 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +QS Y+ I +S LLN+++++L + ++AG ++L + + + L Q I+ Sbjct: 325 --DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGNIELEQNAFNIGECLTSALQIISP 382 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 E + + + D L + D ++ Q+ +L NA+ F+ G + A ++ D Sbjct: 383 MAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLGNAVKFTHAGEIELRAKAENHEDP 442 Query: 719 --------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 +V++ G I D KS+F F RR G GLGL+I S + L Sbjct: 443 TTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQEDASTTRRYGGTGLGLAISRSLLELM 502 Query: 769 GGHVSISSSDEGVTTINC 786 GG + I S+ +T C Sbjct: 503 GGAIEIDSAPGEGSTFTC 520 >gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] Length = 933 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRVE 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 623 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618 E+ ++A + V VS++L+SPL I+ T LL+ G+ + + + VE I ++ Sbjct: 375 ESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEAVEVRRPVERIQKAAD 434 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L+ D+LDLA +D G + + + LL + + + + E ++R++ + + Sbjct: 435 RMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAAEKSLRLEQSVELGVD 494 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + DR+R+LQ+ + ++ NA+ F+S G V ++A + SV++ G IPED + Sbjct: 495 RALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPWGREVRLSVRDTGPGIPEDQRARI 554 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F R+ A +G GLGLSI ++ + +HGG + + S EG T Sbjct: 555 FERYW-QAKETAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGST 598 >gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1229 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L++ A A+ K+ F+ ++S+E+R+P+ I+G L++ + LN++Q+ Y + S Sbjct: 491 LSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQT---GLNARQADYADKAS 547 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +++ LL ++NDILD + V+ G + L ++ LL +V ++ + + ++ + D Sbjct: 548 SAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEVLFDID 607 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDF--IFSVKNNGSS 729 +L ++ AD RL QI + NA+ F+ +G VI A RD FSV++ G Sbjct: 608 PELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAGLRIAFSVRDTGIG 667 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 I + + +F F RR G GLGL+I + + L GG +++ S+EG ++ Sbjct: 668 IAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTV-ESEEGKGSV 723 >gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 948 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 697 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +E + + V V++ELR+PL+NI G+ L+ ++ G L +V + + +L ++++ Sbjct: 466 EEQRKAMVSDVAHELRTPLSNIRGW---LEAAQDG-LADPDPAFVSSLLEEAVLLQHIID 521 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+ DLA DAG+++L+ + +LL +V + + + + V + AD Sbjct: 522 DLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPALRADPV 581 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 RL Q S ++SNA+ + +G V L+A + G V + GS IP + VF+RF Sbjct: 582 RLRQAVSNLVSNAVRHTPEGGRVTLRAYACEEEAGTVAVEVADTGSGIPAEDLPHVFDRF 641 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+IV + HGG V +S +T R+P Sbjct: 642 WRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVVGEGSTFVLRLP 690 >gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 567 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 334 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 390 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 391 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 449 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 450 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 509 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 510 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 561 >gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|160889665|ref|ZP_02070668.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492] gi|156860657|gb|EDO54088.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492] Length = 585 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E + ++ +K++F+ ++S+E+R+PL I+GF+D+L S G+ +Q Y Sbjct: 348 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 405 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I +S +LL L+NDILD++ ++A + L+ + + + +V S+A N + Sbjct: 406 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 464 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728 + ++ D QRL Q+ +LSNA F+ +G T+ LK D +FSV + G Sbjct: 465 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 523 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP D K VF RF Q G GLGLSI + + GG + I + Sbjct: 524 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 570 >gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] Length = 589 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A +K+ FV VS+ELR+PLT+++G+ +LL L +Q Y+ I ++ L Sbjct: 355 REAARLKDEFVSLVSHELRTPLTSVLGYLELLLDGT-DELTEEQRSYLTVIERNARRQLR 413 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+L A VDAG ++ I L D++ S+ + + +++ VA Sbjct: 414 LVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGV--ALVTSVAPTPVVA 471 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL Q+ ++SNA+ F+ G V L+ A D G + V++ G I D + + Sbjct: 472 DPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVL-VRDTGIGIAPDELQRLTT 530 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSKE 792 RF ++A R GVGLGL+I + ++ HGG + + S+ EG TT +P+ Sbjct: 531 RFFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEG-TTFVVTLPAAP 584 >gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 899 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDI 627 K F+ VS+E+R+PL IIGF +++ + G L S++ +Y++ I S +L+LVND+ Sbjct: 670 KTDFLAKVSHEVRTPLNAIIGFAEVMMEERFGPLGSERYKEYLKDIHTSGLHVLSLVNDL 729 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ ++AG M+L+ I N ++ E + + + + + I++ +L +AD + L Sbjct: 730 LDLSKIEAGKMELDVERIDANAMIAECVSIMQPQANRSRVLIRLSLWPRLPRVLADGRSL 789 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745 QI +LSNA+ F+ G VI+ +A D G + VK+ G + E ++ F Sbjct: 790 RQILLNLLSNAVKFNEAGGQVIVSSALTDAGYVVIRVKDTGIGMSESEIETALEPFRQVG 849 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 H+ G GLGL + ++ I + SI+S T + P + Sbjct: 850 PHKAS--GTGLGLPVTKALIEANRASFSITSRRNEGTLVEVAFPPPQ 894 >gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 598 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T + EA + +E K+ F+ +S+ELR+PL +IGF+D+++ G L K ++Y + I Sbjct: 308 TARQEA-QALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFGPLTGKYAEYSQLIWE 366 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S +L+LVND+LD++ ++A +L+ + ++ + I HE + +K + Sbjct: 367 SGQHVLDLVNDVLDMSKIEASRYELSLERFDAREPVSAALRLILATAHEKGVTVKSVLPP 426 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PED 733 AD++ + Q+ +LSNA+ F+ +G T+ L + I + + G I PED Sbjct: 427 TPLEVTADKRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHSIDIQITDTGVGIAPED 486 Query: 734 MCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + K + + + QR G GLGLS+V++ LH G ++I S+ GV T Sbjct: 487 L-KRLGKPYEQSGPMEQRAMGTGLGLSLVQALAGLHRGRMTI-ESELGVGT 535 >gi|294951307|ref|XP_002786921.1| sensory transduction histidine kinase, putative [Perkinsus marinus ATCC 50983] gi|239901499|gb|EER18717.1| sensory transduction histidine kinase, putative [Perkinsus marinus ATCC 50983] Length = 1450 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ V++ELR+PL +IG ++ L+ ++ N + ++++ I+ + LL LVN+I+ Sbjct: 147 KDSFMATVNHELRTPLNGVIGLSESLRMTEP---NPGRKKHLDIINNCAVRLLALVNEIM 203 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVISDGKLGSFV 681 D+A + A M+LN+ + +N++ +V + K+ ++ + + I D Sbjct: 204 DIAALKAKKMQLNFGMVNVNEICEQVCGEMMEAVDKRGRKIKKDKVDLDFIPDPACPEVE 263 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D++RL + S +++NA F+SKGS ++ + G + + + G I +D K +F Sbjct: 264 GDKERLHYVMSAMVNNACKFTSKGSVKVITKGKARG-VLIKIVDTGIGIADDNVKRIFTE 322 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 F + R G+GLGLS+ INLHGG + Sbjct: 323 FEQEDDDHENRKFEGLGLGLSVSNEVINLHGGRL 356 >gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 614 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 23/268 (8%) Query: 543 VNVTDSVRAERALT--------------EKNEALR----KADEIKNSFVQHVSYELRSPL 584 ++VT+ ++AE+AL E+ A R +A +K+ F+ VS+ELRSPL Sbjct: 195 LDVTERIQAEKALRQSELMVTEERAQALERERAARIELERASRMKDEFLAIVSHELRSPL 254 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G++ LL+T KL K Q +E I ++ L+ D+LD++ + G ++L Sbjct: 255 NGILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRP 312 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L ++ ++ + +I+I + +G AD +RL Q+ +LSNA+ F+ + Sbjct: 313 TKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPE 372 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 G V + + + V + G+ I + VF+RF R G+GLGL+IV Sbjct: 373 GGRVEICLEQVETNVQIQVIDTGTGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVR 432 Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789 + + LH G VS++S EG T ++P Sbjct: 433 NLVELHNGKVSVASPGEGQGATFTVQLP 460 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 11/245 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T++++ E+ L E E +A+ K+ F+ ++S+ELR+P+ I+G LL+ ++ LN Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILG---LLQIAQNTDLN 564 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Y+ ++ LL L+NDILD + V+AG M++ L +L++E +++ + Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718 ++ I D + ++ + D RL QI + NA+ F+ G V ++ NGD Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHNGDRCV 684 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G + E+ + VF F RR G GLGLSIV+ + L G V + Sbjct: 685 LRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQV-K 743 Query: 777 SDEGV 781 S++GV Sbjct: 744 SEQGV 748 >gi|162453632|ref|YP_001615999.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161164214|emb|CAN95519.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 692 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618 EA ++A ++ + +++LR+PL++II LL+ S + I ++ Sbjct: 460 EAEQRARRLREEALAIAAHDLRNPLSSIILAASLLERSAPADAGGQPIRNRARQIKRAAE 519 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + ++ ++LD A ++A +KL+ + L+ EV + +A + I++ + G Sbjct: 520 RAVEMLGELLDAAIIEAKGLKLDIQPCEVGSLVREVTEMLAPLAEQKRIQLHTLLPGSGL 579 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKS 737 DR R+LQ+ S ++ NA+ F+++G + + A R SV + G+ I PED+ + Sbjct: 580 ELSCDRGRMLQVLSNLVGNALKFTAEGREITIGAERQGPHVRLSVSDTGTGIRPEDIPR- 638 Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+R+ R R G GLGL IV+ + HGG +S+ S TT +C IP Sbjct: 639 LFDRYWQG--RAARCAGAGLGLYIVKGIVEAHGGQISVDSELGAGTTFSCTIP 689 >gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] Length = 796 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EA+ KA+ K++F+ ++S+E+R+P+ ++G +LL +++L ++ Q + + I +S Sbjct: 254 EAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTEL---DTYQRELIGTIMSS 310 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 T L+ ++NDILD + ++AG LN L + + V +A + E ++ + V D Sbjct: 311 GTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRYDPS 370 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPE 732 L V D RL Q+ + ++ NA+ F+ +G +I +G D SV + G IP Sbjct: 371 LPEGVFTDGGRLRQVITNLVGNAIKFTDEGQVLIDVTGAQSGETVDLRISVTDTGIGIPP 430 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +++F +F N G GLGL+I ++ I L GG + ++S Sbjct: 431 EKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTS 476 >gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 965 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 126/244 (51%), Gaps = 2/244 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + +L +N L +A +K+ FV +S+ELR+P+ IIGF+ LL + GSL +Q+ Sbjct: 684 RRDASLKLQNLQLLEAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADI 743 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I ++ LL L+ D++DL+ ++A ++L ++ L+ L+ E + ++ + Sbjct: 744 MERIVNNAQHLLTLIKDMIDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGL 803 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + ++ K + D RL QI ++SN + F+ G ++ + +V++ G Sbjct: 804 YIQTNLKNPIVINDSLRLRQILVNLVSNGIKFTEMGRVEVVVKEISTDWLMLTVRDTGIG 863 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F F R+ G GLGL+I ES + L G +++ S +T + + Sbjct: 864 IAENDLEHIFEEFQQIDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVK 923 Query: 788 IPSK 791 P + Sbjct: 924 FPRR 927 >gi|330963716|gb|EGH63976.1| bacteriophytochrome [Pseudomonas syringae pv. actinidiae str. M302091] Length = 918 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G N + + Sbjct: 444 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVGDTNFENRNIRR 499 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 500 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 559 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ SK++ NA+ F+ KG + + A D D +F V ++G Sbjct: 560 LNCTSAQGL-VIDADPERIFQVLSKLVGNAIKFTPKGGRINIDAVADGNDVLFRVSDDGI 618 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 619 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGSLWADSSLDSGSVFSFTL 677 Query: 789 P 789 P Sbjct: 678 P 678 >gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 31/361 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYY 491 ++ ++ GV V + R+ L NPA R L + +E + P + + Sbjct: 142 VESMTNGVLVIDTERRVVLMNPALRRLARWDEGEVLGRDLEEALPCPAVAQALSEVLAGQ 201 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 + DG + I +E LQ T DS + F +VT Sbjct: 202 GDQDGQSVSCQITLGLAEEPMHLQVTCSPFLDSRGRL-------VGALAVFDDVT----- 249 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ALR+ DE+K+ +V V++E+ SPL++++ L G LN +Q Q V Sbjct: 250 ---------ALRRLDELKSEYVSTVAHEIASPLSSVLSQLQNLSQGLAGELNERQGQIVR 300 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 ++NL D+LDL+ ++AG M + + +L E + K + + + Sbjct: 301 RARLRIEGIINLSKDLLDLSKIEAGAMGQAEERLAVGPILEEAVDIMRAKAADKAQSLTL 360 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 +L ++ L ++F ++SNA+ ++ +G + ++A +G V +NG +P Sbjct: 361 EMAAELPRVAGVQRELQEVFVNLISNAVRYTPQGGRIDVRATAQDGWVRVDVSDNGFGVP 420 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F RF V +A+ G GLGL IV+ + GG+V + S +T + +P Sbjct: 421 IEDQEKIFQRFYRVKDANTRNIIGTGLGLPIVKRVVEAMGGNVRLRSKPGQGSTFSVLLP 480 Query: 790 S 790 + Sbjct: 481 A 481 >gi|254444049|ref|ZP_05057525.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258357|gb|EDY82665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1318 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 11/232 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ +S+E+R+PL +IG +L+ + +L+S Q Y+E I S LL +VNDIL Sbjct: 809 KSSFLAVMSHEIRTPLNGVIGMCSVLRQT---NLDSMQRDYLESIRVSGLSLLEVVNDIL 865 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687 D + ++ G + L L DL+ V + K +E + + ++ D ++ D R+ Sbjct: 866 DYSKIEKGRLSLECILFDLVDLVESVVSLLGLKANEKELDLHLLIDPRIKRLHYGDPTRV 925 Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QI +L NA+ F+ GS + K+ D+ + V + G I ED ++VF F Sbjct: 926 RQILYNLLGNAIKFTKLGSVTVSLYPKSGYDSDHLVMEVSDTGVGIEEDKHEAVFEAFAQ 985 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINCRIPSKE 792 + R+ G GLGLSI L GG + + S DEG T ++ +P+ E Sbjct: 986 SDVSDVRKFGGTGLGLSICRQLAGLMGGDIELESRLDEGSTFRVSLSLPAAE 1037 >gi|254443602|ref|ZP_05057078.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257910|gb|EDY82218.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1279 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 133/245 (54%), Gaps = 10/245 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + ++D++K++F+ ++S+E+R+P+ I+GF+ ++ T K + ++ + + Sbjct: 883 RELERAKKHAEESDQLKSAFLANMSHEIRTPMNAIMGFSSMIVTDKFS--DDERRDFTKI 940 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKV 671 I + T L L++DILDL+ ++AG +K+ L+ LL+E+ S A ++ E + R K+ Sbjct: 941 IYNNCTSLATLIDDILDLSAIEAGQIKIAKRAFNLDGLLDELSDSFALQVSEKDPTRFKL 1000 Query: 672 I----SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + + + V+D RL QI S ++SNA+ F+ +G + + + F++++ Sbjct: 1001 LFTRPPELQSAIVVSDPLRLRQILSNLISNAIKFTQEGHVYVRYEFEKHRPHVRFTIEDT 1060 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + +++ RF + + RG GLGL I ++ I L GG +S+ S + + Sbjct: 1061 GIGISQKHLDAIWQRFRKIEDDTNTLFRGTGLGLPITKNLIELLGGEISVESEEGKGSRF 1120 Query: 785 NCRIP 789 IP Sbjct: 1121 TFSIP 1125 >gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 775 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 496 DGNIELKELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|329668012|gb|AEB93960.1| two-component system histidine kinase [Lactobacillus johnsonii DPC 6026] Length = 385 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLTPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N +F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG++ S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTAE-LTSFIIQLP 374 >gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1] gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1] Length = 587 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] Length = 929 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L + Q+ Y+ I S+T LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQTDYLNTIEKSATNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 N++NDILD + ++AG + L + L EV AT HE + + + D K+ Sbjct: 340 NIINDILDFSKLEAGKLALESIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ Q+ + ++ N++ F+ G+ I R D + F V++ G I E Sbjct: 400 VGDSLRIQQVLTNLVGNSIKFTEHGNIDISVEMRSQKEDVVELQFMVRDTGIGISERQQA 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 569 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 16/252 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + +Q +++E Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAQEQQEFLEE 364 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S+ LLNL+NDILD+A ++AG M L ++ L +L V + ++ + Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN------GDFI 720 L V + QRLLQ+ ++SNA+ F+ +GS V I+K D+ G Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIDHQHQEFPGLVK 484 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + D +F +FV +H G GLGL+I + I GG V S Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLIQAMGGQVEFYSMG 544 Query: 779 EGV-TTINCRIP 789 EG+ +T+ +P Sbjct: 545 EGLGSTVTFTVP 556 >gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon] Length = 1037 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 13/246 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDL 593 T + V V + L ++ E L K D++K +F+ +E+RSPL I+G+ L Sbjct: 781 TPVKIVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 840 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ G LN KQ +YV I S++ L L+ +L++ ++AG +L+ + + +++N Sbjct: 841 LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 897 Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711 V + + I V+ +G D+Q++ IF ++SNA+ ++ KG I+ Sbjct: 898 VLERFGPQADAKKQTISAVVPEGT--EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVV 955 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGG 770 R G V + G IP++ F R F+++ ++ G+GLGL+IV+ ++ LHGG Sbjct: 956 EDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGG 1014 Query: 771 HVSISS 776 V ++S Sbjct: 1015 EVWVTS 1020 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GGH+++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGHITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 558 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 441 VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ + +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLSTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + +I Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731 S + D RL QI + ++SNA+ F+ +G T++++A D+ SV++ G + Sbjct: 392 PSSLIGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDDEHEDHAQLRISVQDTGIGLS 450 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + I GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 646 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 137 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 196 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 197 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 253 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + S D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 254 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 311 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 312 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 371 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 372 VDSEPGMGSQFTLRIP 387 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 15/262 (5%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TM+T + E+ L +A ++ IK F +VS+ELR+PL ++G +LL+ Sbjct: 247 TMMTVLEAR-----EQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNM 301 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L KQ +YV+ S LL L+ +ILD + +++G KL+ + L ++L++ Sbjct: 302 ---GLTPKQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGL 358 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 +A + ++ + V++ S D R+ QI ++ NA+ F+ +G + L+ Sbjct: 359 LAGQAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEK 418 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 +F VK+ G IP + K +F F R+ G GLGL+I ++L GG Sbjct: 419 TAKKLVLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 + + S G + +P +E Sbjct: 479 DIGVESKFGGGSRFWFTVPLEE 500 >gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 867 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 12/250 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++AL E + A++ K F+ ++S+ELR+PL I+G L + ++L Sbjct: 471 DITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRETRL---K 527 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++Y++ +SS +LLN++NDIL++A ++AG + L + N++L + + Sbjct: 528 PEQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRFFRHSTE 587 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG- 717 + + + + G + V D R+ QI +L N++ F+ +G IL G Sbjct: 588 AKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILPVTPRPGR 647 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + +K+ G IP D VF F V + Q +G GLGL IV S + G +++ Sbjct: 648 VTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLGLGIVRSLVWSMNGTIAV 707 Query: 775 SSSDEGVTTI 784 S TTI Sbjct: 708 DSETGMGTTI 717 >gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 597 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 133/269 (49%), Gaps = 16/269 (5%) Query: 536 AQTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A+ +L F +S+ RA + L + EA +A+ K F+ +S+E+R+PL ++G L Sbjct: 181 AEAVLIFRPAANSIERAMKRLKDAREAADRANAAKTDFLAQMSHEIRTPLNGVLGMARGL 240 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + L + Q + V I +S +LL++VND+LDL+ ++AG ++L + L +++ Sbjct: 241 RDTPL---DEGQVEMVSTICSSGDLLLSVVNDVLDLSKIEAGEIELETVDMSLVQIVDWT 297 Query: 655 KQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712 + E I I+ I G G + D R+ QI S ++SNA+ F+ G+ I ++ Sbjct: 298 VSAFRPACVEKRITIESSIDPGAEGWYRGDPTRVRQILSNLVSNAIKFTQIGTVSISVRC 357 Query: 713 ARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 + GD V + G +P +++F F S A R G GLGL I Sbjct: 358 STSPGDGTDRVEICVADTGIGVPAHKLQTIFQAF-SQADSSTTRAYGGTGLGLPICRKLA 416 Query: 766 NLHGGHVSISSSD--EGVTTINCRIPSKE 792 L GG +S+ S + T+ R+P E Sbjct: 417 TLMGGEISVRSRPGCGSIFTVALRMPRTE 445 >gi|83953721|ref|ZP_00962442.1| PAS [Sulfitobacter sp. NAS-14.1] gi|83841666|gb|EAP80835.1| PAS [Sulfitobacter sp. NAS-14.1] Length = 698 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 171/372 (45%), Gaps = 50/372 (13%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATCSRY----YN 492 I+ L++G +F R+ LSN ++ +++ L PG + I ++ YN Sbjct: 316 IEALNDGFVMFDAQDRLLLSNSKYKEMYELPSEVLKPGAPFAELLRIGVKSKQFPMGRYN 375 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 E + + AI E ++ + L V++ S PL + + V+VT+ Sbjct: 376 EEEWIERRLAI----HRENRTSETEQHLSGGRVIKASDRPLADGSYVGLRVDVTE----- 426 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL------------- 599 L+ +A A + K F+ +S+ELR+PLT I+G L + +++ Sbjct: 427 --LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYED 484 Query: 600 ---GSLNSKQ---------SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 G +K+ S + + S LL+L+N+ILD+A +++G + + S + Sbjct: 485 GEIGHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVAKIESGSLVIEPSPCAV 544 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D+++ V + + T + + V+ + + AD+ R QI ++ NA+ F+ G Sbjct: 545 QDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQILFNLIGNAIKFTDTGFV 602 Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 ++ + GD + F V ++G+ IPE +S+F F RR G G+GL+I S Sbjct: 603 RLV--VKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTATRRAGGTGMGLAISRSL 660 Query: 765 INLHGGHVSISS 776 + GG +S+SS Sbjct: 661 AEMQGGSLSVSS 672 >gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 667 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I Sbjct: 240 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 294 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668 ++S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 351 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V L + D RL Q+ +LSNA+ F+ + +K RD+G + SV ++G Sbjct: 352 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 409 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 I + +F RF Q G+GLGL+IV+ + +HGG V +S G T Sbjct: 410 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 469 Query: 786 CRIP 789 R+P Sbjct: 470 VRLP 473 >gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1154 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 40/275 (14%) Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ER E + AL +AD + K+ F+ ++S+E+R+P+ +IG T LL + LN Q + Sbjct: 397 ERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLET---DLNETQRR 453 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E + +S LL L+NDILD + +++G ++L L D L+ +A K E + Sbjct: 454 YAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLE 513 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------- 717 +D + + + D R+ QI + ++ NA+ F+ +G V+ + +++G Sbjct: 514 FICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRRQETGDKS 573 Query: 718 ------------------DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 +F FSV++ G IPED +F F R+ G Sbjct: 574 QETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVTRKFGGT 633 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I L GG V + S + TT +P Sbjct: 634 GLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVP 668 >gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] Length = 806 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 139/265 (52%), Gaps = 28/265 (10%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G +E+L + Y I PL + L +K E L D +K++F+ + Sbjct: 556 GVIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL +I+GF+ LL + ++ +Y++ + ++ +LL LV+DILDL+ +++ Sbjct: 598 MSHEIRTPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIES 654 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSK 693 G S + +N+ ++ +S+ K+ E + + K + D + D+ R +Q+ + Sbjct: 655 GTFDFVRSDLDVNESCMKIIKSMEMKVPETVDLVFEKYMPDCHI---YTDKNRFMQVITN 711 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 ++NA+ F+ +G+ + + F V++ G IP++ S+F RFV Q G Sbjct: 712 FINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGFGIPKEKIDSIFERFVKLNTFVQ--G 769 Query: 754 VGLGLSIVESFINLHGGHVSISSSD 778 GLGLSI +S ++ GG + + S++ Sbjct: 770 TGLGLSICKSLVSQMGGKIGVESTE 794 >gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1547 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 16/253 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ V+ + L A K+ F+ ++S+E+R+P+ +IG T LL + LN Sbjct: 817 DITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---DLN 873 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y E + +S LL L+NDILD + +++G ++L L D L+ +A K Sbjct: 874 ETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAE 933 Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717 E + +D + + + D R+ QI + ++ NA+ F+ +G V+ + +++G Sbjct: 934 EKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQE 993 Query: 718 --DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 +F FSV++ G IP D +F F R+ G GLGL+I + + GG Sbjct: 994 SQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAEMMGG 1053 Query: 771 HVSISSSDEGVTT 783 V + S + TT Sbjct: 1054 DVGVDSVEGQGTT 1066 >gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 623 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 122/229 (53%), Gaps = 6/229 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L + N L + +++KN F+ + S+E+R+PLT+IIGFT+LL + + +Y++ Sbjct: 223 QSLLQFNYNLERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYEAERERHQEYLQI 282 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S LL+L+NDILDL+ ++A +++ + + L V + K + +++++ Sbjct: 283 IQSSGKHLLSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLALVKEKAGDKGLKLQLE 342 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + + + D RL Q+ +L NA+ F++ GS V L+ + F+V + G I + Sbjct: 343 INEDVNTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVLKDSWLRFTVWDTGVGISQ 401 Query: 733 DMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F + N + G GLGL + + +HGG + + S Sbjct: 402 EDLSLLFRPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGGSIEVRS 450 >gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 614 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 13/267 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 +E+S L + T+ +V++ R ERA E +EA + K+ F V++ELR+PL+ Sbjct: 86 IEWSETTLADGGTIAVGRDVSEERR-ERA--EASEAAQG----KSVFFASVTHELRTPLS 138 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +G LLK S L+ Q+ Y+E + +S+ LNL++DILDL+ ++AG + L + Sbjct: 139 GALGAAALLKDS---GLHPDQAAYLEAVRSSAQHALNLIDDILDLSRLEAGRLTLRAEPV 195 Query: 646 VLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L L+ + + +AT+ E + + IS AD RL QI + NA+ F+ Sbjct: 196 DLRALIEDACEILATRAAEKGLALAHAISSDVPAEIRADPARLRQILFNLGGNAVKFTET 255 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVES 763 G VI++A+ +G+ K+ G I + ++F F A G GLGL++V+ Sbjct: 256 GG-VIVQASYHDGELSLIFKDTGPGISKTDQSTLFKHFERGAAEHNATPGAGLGLAMVKR 314 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790 G V +SS T R P+ Sbjct: 315 LAEAMEGEVGVSSEPGQGATFWTRFPA 341 >gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 631 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 28/286 (9%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM---LTFVNVTDSVRAER-------------ALTE 557 L L+LLS +V ++S +P+ T+ F V SV AE+ L E Sbjct: 175 LVNPLQLLSGAVSDFSGGKVPSKVTLPKRWCFDEV--SVLAEKYNRSVEKVREHQTELEE 232 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + + A+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q ++VE I +SS Sbjct: 233 ERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTKL---DPQQKEFVEIIDSSS 289 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+ +++DILD + V+AG ++L + L +L++V K + N+++ D L Sbjct: 290 HSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVKAKQKNLQLLSDIDPHL 349 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPE 732 + V D RL Q+ + +LSNA+ F+ +G +L + D F V ++G I + Sbjct: 350 PAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVELTRQEHDVAMIRFRVVDSGIGIAK 409 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +++F RF R+ G GLGL+I +NL GG + ++S Sbjct: 410 ENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQLTS 455 >gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 752 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 12/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+ L +K E + +++ +K++F+ ++S+E+R+PL I+GF++LL + + + + ++ Sbjct: 515 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEF 570 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ +LL LVNDILDL+ ++AG M YS ++ L + Q+ +++ + Sbjct: 571 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 630 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 I + + +++ RL Q+ + L+NA F+ +GS + R++G + F VK+ G Sbjct: 631 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 688 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785 I VF RF Q G GLGLSI ++ + NLHG S +G T TI Sbjct: 689 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILDNLHGKIGVESEEGKGSTFWFTIP 746 Query: 786 CRI 788 C + Sbjct: 747 CAV 749 >gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 786 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609 AER L +K A A++ K+ F+ ++S+ELR+PL I+GF +L+++ GSL S + + Y Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL++++DIL ++ ++A +KL I L L +A + ++ I Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTAALTLVAKEAASKSVSI 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + G L +AD + L QI I+ NA+ F+ + V L+ NG + + G Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785 IP+ + F + +N R +G GLGL+I S LHGG + I S+EG+ T + Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743 Query: 786 CRIP 789 R+P Sbjct: 744 VRLP 747 >gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 502 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 13/238 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ER L+ ++EA +A KN F+ +S+ELR+PL IIGF++++ G + Q +Y Sbjct: 246 RSERLLS-RSEAANRA---KNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVG--QPKY 299 Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 V+Y I +S LL+++NDILD++ +AG ++L I + LN + + E Sbjct: 300 VDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRASELG 359 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKN 725 + + + +AD + Q+ + SNA+ F+ + V ++ + GD + +V++ Sbjct: 360 VELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVLAVRD 419 Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780 G I +F FV +A ++G GLGL +V +NLHGG + + S DEG Sbjct: 420 TGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVDEG 477 >gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 517 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 138/259 (53%), Gaps = 16/259 (6%) Query: 543 VNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKL 599 V++T ++RA +R ++EA A++ K++F+ + S+E+R+PL I+G T+ +LK Sbjct: 109 VDIT-AIRANEQRLRLARSEA-EAANKTKSAFLANTSHEIRTPLNGILGLTEHVLKL--- 163 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L ++ Q++ I + T LL L+NDILDL+ ++AG +L L++ + +V++ + Sbjct: 164 -DLPTEARQHLNTIHDAGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWS 222 Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 + + + VI G +AD RL Q S ++SNA+ F+ +GS I + A++ Sbjct: 223 GPAKQKGLSLDVVIGPGVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKA 282 Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +V + G I +D+ +F F R G GLGLSIV+ ++L GG V Sbjct: 283 GQSVVTVAVSDTGPGISDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSV 342 Query: 773 SISSSDEGVTTINCRIPSK 791 + S TT R+P K Sbjct: 343 DLESKVGVGTTFRVRLPVK 361 >gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 568 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 16/252 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + +Q +++E Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAEEQQEFLEE 364 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S+ LLNL+NDILD+A ++AG M L + L +L V + ++ + Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGAVELAELFQAVDNFTLPQAQRKHLEFRSK 424 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI---- 720 L V + QRLLQ+ ++SNA+ F+ +GS V+ K N +F Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIHHQNQEFPGHVK 484 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + D +F +FV +H G GLGL+I + + GG V S Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 544 Query: 779 EGV-TTINCRIP 789 EG+ +T+ +P Sbjct: 545 EGLGSTVTFTVP 556 >gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 571 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271] gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271] Length = 444 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611 +L + + +A+++KN F+ VS+E+R+PLT I G+++ LKT L KQ + Sbjct: 212 HSLNHMSNKIEQAEQMKNEFIASVSHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 IS + L++LV ++LD + + + L + L D+L E + E ++ IK Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 329 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I +L + DR +L Q+F I+ NA+ +S K V ++A ++ G + VK+ G I Sbjct: 330 TIERIEL---MGDRNKLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGVGI 386 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + F N H G GLGL+IV+ + LHGG +S S + TTI ++P Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLP 443 >gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + I GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 834 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 138/269 (51%), Gaps = 35/269 (13%) Query: 547 DSVRAERALTEKNEALRK------ADEI-------KNSFVQHVSYELRSPLTNIIGFTDL 593 + + E+ L E NE+L+K A EI K++FV ++S+ELRSPL IIGF+ L Sbjct: 330 ERAQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQL 389 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + +K +L +Q + I S LLNL+N+ILD + ++AG LN L LL++ Sbjct: 390 MLRTK--NLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDD 447 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 ++ + K I + I D L +V D +L QI +LSNA+ F+++G V+ Sbjct: 448 LEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSN 507 Query: 713 ARD----------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGV 754 R+ N ++ F++K+ G I E +F F + + R + G Sbjct: 508 FRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGT 567 Query: 755 GLGLSIVESFINLHGGHVSISS-SDEGVT 782 GLGL+I FI L GG +++SS D+G T Sbjct: 568 GLGLAITRQFIKLMGGDINVSSVVDQGTT 596 >gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 594 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ RK D+++N F+ +VS+ELR+P++ + G+++ + + + ++ + Sbjct: 357 RDMTEE----RKLDKLRNDFIANVSHELRTPISMMQGYSEAI-VDDIAGTDEEKKEMASV 411 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S + LVN++LDLA ++AG ++L +N L + + E I ++ Sbjct: 412 IYDESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHD 471 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIP 731 K D R+ Q+ + ++ NA+ + + G +L+ + + G FI V+++GS IP Sbjct: 472 LQSKGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKVLERSDERGLFI-EVRDSGSGIP 530 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ VF RF A R G GLGL+I ++ I H GH+++ S TT + IP Sbjct: 531 EEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIP 590 Query: 790 SKE 792 E Sbjct: 591 RNE 593 >gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 766 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 62/346 (17%) Query: 461 PA--FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 PA F+ LWKT N+ I+N + YY +S I+ D Sbjct: 325 PAELFKELWKTIRNKKIFKATIKNCKKSGEAYYVDS-------VIVPMLD---------- 367 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHV 576 +++ ++EY +VR E + ++EAL A++ K+ F+ ++ Sbjct: 368 --VNNEIVEYL------------------AVRYEVTELINSRDEALM-AEKAKDEFLSNM 406 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL I GF+ LLK + KQS+Y+E+I SS+ L+ L+NDILDL+ + +G Sbjct: 407 SHELRTPLNAINGFSSLLKRQ---IKDEKQSKYIEHILESSSQLIGLINDILDLSKLQSG 463 Query: 637 IMKLNYSTIV----LNDLLNEVKQSIATK----MHENNIRIKVISDGKLGSFVADRQRLL 688 L+Y + L+ +I T + + + +K++++G D R+ Sbjct: 464 KFILDYHRFEPYSNIYSLVERFSPNIETASLNLVLDLDDSLKIVANG-------DWLRIS 516 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QI + +LSNA+ F+ G V L A ++ + V +NG I +++ + +F F Sbjct: 517 QIITNLLSNAIKFTPAGGEVRLSANHNDDNLRIIVSDNGLGISKEVQEKIFMPFEQADSS 576 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 R+ G GLGLSIV + + + + S D +T IP KE Sbjct: 577 TTRKFGGTGLGLSIVSNLLKQMDAQIKLESEDGNGSTFELNIPIKE 622 >gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1082 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 25/264 (9%) Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 + QT L V +++D + E AL + +A+ K+ F+ ++S+ELR+PL IIGF Sbjct: 569 DEQTCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQ 628 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL + SL + ++ I S LL+L+N++L L+ V+AG +KLN + L +L Sbjct: 629 LL--GRDSSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQ 686 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +++ + +++ V D L +V D +L Q+ +++NA+ F+S+G V L+ Sbjct: 687 VLEEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGG-VTLR 745 Query: 712 AARDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR 752 G+ F +++ G I + +S+F FV + A R Sbjct: 746 VKAVQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRKSLE 805 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL I + F+ L GG + +SS Sbjct: 806 GTGLGLPISQQFVRLMGGEIHVSS 829 >gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 639 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/353 (27%), Positives = 158/353 (44%), Gaps = 29/353 (8%) Query: 453 DGRIKLSNPAFRSLWKTEENRL--SP------GTHIRNIAATCSRYYNESDGWDLFAAII 504 D R+ N AF +L E L SP + R A T R + G A+I Sbjct: 157 DDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSARTGMRRFRVCGG----GAVI 212 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 D+R ++ + LE S+ PL V V + RAL + + Sbjct: 213 ----DQRTEIEALHRDGHEVPLELSVSPL-QLDGRWHAVGVMRDISERRALEVDRQ---R 264 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +N F+ +S++LR+PL I+GFTDLL S+ L+++Q +V ++S LL L+ Sbjct: 265 AEADRNIFLAAISHDLRTPLNAIVGFTDLLARSE---LDTEQRHHVGLCRSASQTLLGLI 321 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 + +L+L+ ++AG ++L L L + E + + + + +V D Sbjct: 322 DTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEPDMPGWVRGD 381 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R Q+ ++SNA+ F+ GS + A G +F+V + G IPE +F+ F Sbjct: 382 PVRFGQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIPEADQGRIFDAFC 441 Query: 744 SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT---INCRIPSKE 792 ++ G GLGL I + + L GG + + S+ GV T +PS E Sbjct: 442 QGGPVLARKEGSGLGLKICQELVRLMGGTIQLVST-PGVGTTFRFTVTLPSAE 493 >gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] Length = 867 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R++T +A A++ K F+ VS+ELR+PL IIG DL++ +K L+ +Q + Sbjct: 183 RSMTAAQQAAEAANKAKTQFLTAVSHELRTPLNAIIGMGDLIQDTK---LDPEQRDMAKT 239 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S + LL+++N ILD + +++G M +N + +N +L EV Q + + + I Sbjct: 240 IQYSGSSLLSMINGILDFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRY 299 Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NG---DFIFSVKNNG 727 D KL F V D + + ++ I NA+ F+ +GS I ++ NG + VK+ G Sbjct: 300 VDSKLPPFLVGDARHIREVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTG 359 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ED +F RF R G GLGLSIV + GG V +SS Sbjct: 360 IGISEDAQGRIFERFTQADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSS 410 >gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] Length = 1535 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 141/270 (52%), Gaps = 15/270 (5%) Query: 532 PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PLP+ T F+ ++TD+V A ++ E ++ +A+ K+ F+ +VS+ELR+PL Sbjct: 1110 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1169 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 +G +L+ +L SL+ +Q QYV S L+ L++DILDL+ ++AG + + Sbjct: 1170 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1226 Query: 647 LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + +L++EV + + I ++ I+ G D RL Q ++ NA+ F+ KG Sbjct: 1227 IKELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1286 Query: 706 ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759 V A GD I +V++ G IPED +S+F F + ++ + G+GLGL Sbjct: 1287 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1346 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 IV + L GG + + S+ T ++ IP Sbjct: 1347 IVCRLMELFGGSIEVESAPNMGTAMHFAIP 1376 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 14/247 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER EK +A A K+ F+ ++S+E+R+PL I+G L+++ + KQ +YV Sbjct: 254 ERVEHEKAKA-ETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESE---TQTPKQGEYVN 309 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRI 669 +S L N+++DILDLA V+AG + L D L V + + ++ N+++ Sbjct: 310 AAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVTSRHSGVNLKL 369 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVK 724 K+ + L + D RL QI + I+ NA+ F+ +G +I ++ N +F+V+ Sbjct: 370 KLPPELPL-TVTGDPARLQQILTNIVGNALKFTHEGHVLITAQLLPRSTPGNCHILFTVE 428 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I +D +F F S + Q +G GLGLSI + L GG +++ S+ E T Sbjct: 429 DTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTIAVESNVEQGT 488 Query: 783 TINCRIP 789 T IP Sbjct: 489 TFYISIP 495 >gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37] gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 968 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 139/246 (56%), Gaps = 15/246 (6%) Query: 541 TFVNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +FV + S+R ++AL EK A+ KA + K+ F+ +S+E+R+P+ ++G T+L+ ++ Sbjct: 410 SFVFMEASIRKNIQQALHEKEIAV-KASQAKSEFLATMSHEIRTPMNGVLGMTELVLETE 468 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +S+Q +++E I +S LL+++NDILD + ++AG ++L+ + L +L+ + S+ Sbjct: 469 L---SSEQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSL 525 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA 713 + + +++ ++ ++V DR RL Q+ + ++SNA+ F+ +G S VI + + Sbjct: 526 SPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQS 585 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770 V+++G I + +F F S A R G GLGL+I + I + GG Sbjct: 586 ATALSLQIRVRDSGIGIAPENQDKIFESF-SQADSSTTRNYGGTGLGLAISKQLIEMMGG 644 Query: 771 HVSISS 776 + SS Sbjct: 645 SIGFSS 650 >gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 905 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ EA R IK+ F+ +S+ELR+PLT I G LL + KQ+Q + Sbjct: 667 RDVTERAEAER----IKDEFISTISHELRTPLTAINGSLALLDAKVAMAAPDKQAQMIGI 722 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670 ++ LLNLVN ILDL + +G M L S L L+++V H ++ ++ Sbjct: 723 ARRNTDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLAHNADVSFSLQ 782 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + SD + AD +RL Q+ + ++SNA FS + +++ ++ SV + G + Sbjct: 783 IPSDCVI-VVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSIARVSVTDKGPGV 841 Query: 731 PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + +F RF +++ + G GLGL+I ++ I HGG + ++ G T + Sbjct: 842 PPEFLNRIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNPGGGCTFYFEL 901 Query: 789 PS 790 P+ Sbjct: 902 PA 903 >gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020] Length = 1037 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ + E+ L + +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 521 WVDITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 580 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 581 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 639 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ A D+ + Sbjct: 640 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRV 699 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +++++G I + + +F F + AH G G GLGLSI + L G +S+ Sbjct: 700 RIAIQDSGEGIEPERQQKIFQPFTQASDDTAAHYG---GGGLGLSITRQLVELMKGDISL 756 Query: 775 SSSDEGVTTINCRIP 789 S T +N +P Sbjct: 757 YSEPGEGTLVNIDLP 771 >gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] Length = 567 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 334 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 390 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 391 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 449 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 450 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 509 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 510 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 561 >gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas chlororaphis] gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + I GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] Length = 740 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K F ++S+ELR+PL I+GF ++L + K +Y+ ++ SS LLNL+ Sbjct: 371 AQKAKEEFFSNMSHELRTPLNAILGFLNILNKQ---ISDKKHLEYLRHVGTSSKQLLNLI 427 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 NDILDLA + G ++ + L + Q + + NI +K IS G F+ D Sbjct: 428 NDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGD 487 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R+ QI +LSNA+ F+ G T+ L F V++ G + D+ +F FV Sbjct: 488 LFRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIVVQDTGIGMSPDVQDKIFKPFV 547 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGLSI + I L G + + S + +T +IP Sbjct: 548 QADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIP 595 >gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185] Length = 902 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +R L E +D++K++F+ ++S+E+R+PL I+GF+ L+ S + Sbjct: 488 DITELEMIKRELQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAES---NDE 544 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + +++ LL L+N+ILDL+ +++GI++ L++L EV + +M Sbjct: 545 EERKTYYGIVESNNGRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFRMP 604 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + SD L D+ R+ Q+ S ++ NA F+ +GS + R +F V Sbjct: 605 VGVSLVHEPSDESL-MIETDKNRVFQVISNLIGNAAKFTKEGS-ISYGYKRVGDQIVFHV 662 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G+ I + VF RF + Q G GLGLSI +S + GG ++++S TT Sbjct: 663 TDTGTGIEPEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGKITVNSEFGVGTT 720 Query: 784 INCRIP 789 N +P Sbjct: 721 FNFTLP 726 >gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium atrosepticum SCRI1043] gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum SCRI1043] Length = 951 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL ++ V ++ SS++LL +++DILD + +++ +K+ +++++ + + Sbjct: 498 ---SLPKDANRLVVAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + I+ S D RL Q+ S +LSNA+ F+ G + RD Sbjct: 555 YLPLVVKKRLTLYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 613 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G F V++ G I +F+ F QR +G GLGL+I E +NL G ++I Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 674 ESEPGLGSLFGVRIP 688 >gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 7/214 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGS---LNSKQSQYVEYISASSTILLNLV 624 K++F+ +S+ELR+PL IIGF T +L+ ++ ++ + Q + I S LL L+ Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLGLI 304 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDLA V+AG ++LN + + L LL E ++ +++ I+++ L + AD Sbjct: 305 NDILDLAKVEAGKLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFADE 364 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 R+ Q+ ++SNA F+ G + + A D + + V++ G I + +F +F Sbjct: 365 VRVRQVLLNLVSNACKFTHAGE-IAVGARVDTNEIVLWVRDTGIGIAPADQERIFQQFEQ 423 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + NA Q G GLGLSI + LHGG + + S Sbjct: 424 IENADTRQHAGTGLGLSICRWLVELHGGRMWVES 457 >gi|159184266|ref|NP_353375.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|159139593|gb|AAK86160.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 746 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 536 AQTMLTFVNVTDSVRAER-ALTEKNEA-LR--KADEIKNSFVQHVSYELRSPLTNIIGFT 591 A + L ++ V ER AL E+ +A LR KAD K + VS+E+R PL+ ++G Sbjct: 199 ASSRLMISSIARDVTEERLALAEREDARLRAEKADAEKARLLATVSHEIRLPLSGMLGMN 258 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL +KL N +Q Y++ + S L+ LV D+LD +T++AG +LN L L+ Sbjct: 259 HLLSQTKL---NQEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFRLNPRAENLRRLI 315 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + +A + HE I I + ++ D RL Q+ ++ NA+ F+ G VI Sbjct: 316 ESIVEMLAHRAHEKGIEIASFVTPDVPDYLDFDPARLRQVLFNLIGNAVKFTQVGGVVI- 374 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769 +A +G+ +V++ G + E +F F QR G GLGL+I + G Sbjct: 375 RARMVDGELQITVEDTGPGMSEAEQARIFGEFEQAGPLSQRSAGTGLGLAISARIVREFG 434 Query: 770 GHVSISS-SDEGVT 782 G++++SS EG T Sbjct: 435 GNLTVSSRRGEGST 448 >gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 529 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 9/211 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+PL +IIG TD L + L+++Q+ +VE + ++ L+ ++NDILDL+ Sbjct: 148 FLANMSHEIRTPLNSIIGITDTLAET---PLDNQQASFVEILQRANHQLMTIINDILDLS 204 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690 V+AG M+L L LL+E++ + + E +++ + D + FV D RL Q+ Sbjct: 205 KVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVEEYFVGDADRLRQV 264 Query: 691 FSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 +L+N++ F++ G V + G+ +F V + G I + K +F F Sbjct: 265 LMNLLNNSLKFTNNGEISLQVSVNRTVHKGNLLFCVTDTGIGISKQKFKDIFQPFTQADT 324 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGLSI ++ + + GH+ S Sbjct: 325 TTTRKYGGTGLGLSITKNIVQMMNGHIWFES 355 >gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 709 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 143/276 (51%), Gaps = 21/276 (7%) Query: 526 LEYSIIPLPNAQ-TMLTFVNVTDSVRAERAL-TEKNEALRK---ADEIKNSFVQHVSYEL 580 L+ S +P+ + + ++ V + D + +R L +++E LR+ A E++N F+ S+EL Sbjct: 434 LQVSSVPIRDHRGQIVAAVALVDDITQQRQLEQQRSELLRQIESALELRNQFIATASHEL 493 Query: 581 RSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 ++P+T + G+ L+ S+ G L +E I+ + L+ND+LD++ ++AG ++ Sbjct: 494 KTPITLLKGYAQVLMDRSREGVLRRP----LEIINRQVDRMSELINDLLDVSKIEAGKLE 549 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 L + L D + EV + + + I++++ + + DR RL Q+ + +SNA+ Sbjct: 550 LVLRKVELTDAVREV--VMDQREAASGFEIELLAAEPVW-VLGDRNRLQQVVANFISNAV 606 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF-----NRFVSNAHRGQRRGV 754 +S VI++ RD + SV + G IPED VF R VS H G+ Sbjct: 607 KYSGNSRRVIVEVRRDGPEVEVSVTDYGIGIPEDQQPEVFGLYFRGRNVSPRHYS---GL 663 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 GLGL I + + HGG + +SS + + R+P+ Sbjct: 664 GLGLYICRNIVERHGGRIGMSSREGEGSRFWFRLPA 699 >gi|149200017|ref|ZP_01877043.1| Signal transduction histidine kinase [Lentisphaera araneosa HTCC2155] gi|149136890|gb|EDM25317.1| Signal transduction histidine kinase [Lentisphaera araneosa HTCC2155] Length = 467 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F++H+ +ELRSPL I F++L+ G + KQ ++ I A++ LL+LVND++ Sbjct: 241 KTRFIRHLGHELRSPLAAISSFSELMLEGMHGDITVKQEASLQRIMANAQNLLDLVNDLV 300 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD--RQR 686 D A +AG ++L L EV +S+ + ++ +KVI V D R Sbjct: 301 DQAKAEAGSLELKLEAKDLKAFCEEVLESVKIEAEKSG--LKVIYHASEEDLVCDIHEVR 358 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L Q+ ++SNA+ FS +G + L+ R G V+++G I +++F F Sbjct: 359 LRQVIVNLISNAIKFSKQGGKLELRVQRKGGLAFIEVEDDGIGISPADQRNIFMEFHQGD 418 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +G GLGL + LHGG +++ S + ++P Sbjct: 419 TYQKEKGAGLGLHLSRQIARLHGGDITVVSEKGKGSVFRVQLP 461 >gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] Length = 930 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 136/250 (54%), Gaps = 13/250 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L + AD +K++F+ ++S+E+R+PL IIGF+DLL ++ +L Sbjct: 686 DITELKETEAELILARDKAEMADRLKSAFLANMSHEIRTPLNAIIGFSDLLVEAE--NLE 743 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +YV+ + ++ +LL L+ DILDL+ ++AG + + + +N L ++ + K+H Sbjct: 744 ERK-EYVKIVRNNNELLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMKVH 802 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E ++++ D L ++DR RL Q+ ++NA+ F+S+GS + + ++ Sbjct: 803 E---EVELLFDSHLPQCHIISDRNRLHQVILNFVNNAIKFTSQGSIRVGYQVKGEELEVY 859 Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I E+ +F RFV N+ G GLGLSI +S I GG + + S Sbjct: 860 -VQDTGVGIDEEQQLHIFERFVKLNSFVP---GTGLGLSICQSIIEQLGGRIGVDSELGK 915 Query: 781 VTTINCRIPS 790 + R+P Sbjct: 916 GSRFWFRLPG 925 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TM+T + E+ L + +A ++ IK F +VS+E+R+PL +IG +LLK Sbjct: 247 TMMTVLEAR-----EQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM 301 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LN KQ +YV+ S LL L+ +ILD + +++G KL+ L ++L++V Sbjct: 302 ---GLNPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGL 358 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 +A + + + V+ D S D R+ QI +++NA+ F+ +G I L+ Sbjct: 359 LAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK 418 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + F V++ G IP + VF F R+ G GLGL+I ++L GG Sbjct: 419 KAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478 Query: 771 HVSISS 776 + + S Sbjct: 479 DIGVES 484 >gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1332 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 14/241 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ +Y Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + N+ Sbjct: 811 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRPMTMQKNLDF 870 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---GDFI---- 720 V + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ G + Sbjct: 871 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPATDDEVPGSVVRGGS 930 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IPE +S+F F R+ G GLGLSI +L GG V++ Sbjct: 931 VVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 990 Query: 776 S 776 S Sbjct: 991 S 991 >gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 576 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 31/251 (12%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L + ++IKN F+ +S+ELR+PL +I+GF+++L ++ +L KQ +YV I Sbjct: 285 LAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLST--STLPDKQRRYVSNIQ 342 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LLNL+ND+LDLA +++G M+L+ S + DL+ S+ + ++ + Sbjct: 343 TAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTSEVS 402 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AAR---------DNGD-- 718 ++ D +L QI +LSNA+ F+ G V +K A R + GD Sbjct: 403 PEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAGDAP 462 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-------RGVGLGLSIVESFI 765 F V++ G IP + + VF +F + GQ+ G GLGLSIV Sbjct: 463 PVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVRELS 522 Query: 766 NLHGGHVSISS 776 L GG V + S Sbjct: 523 RLMGGEVRLQS 533 >gi|163741325|ref|ZP_02148717.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161385678|gb|EDQ10055.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 892 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608 R R L E NE L + + K++F+ VS+ELR+P+T+I F+++L+ T L S S+ Sbjct: 649 RTARKLQETNEKLTQLSQQKDAFLSQVSHELRTPMTSIRAFSEILRDTENLAS--QDHSR 706 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I + L L+ND+LDL+ ++ G + LN S L D+L+ ++AT + + + R Sbjct: 707 YAGIIHDEAQRLTRLLNDLLDLSVLENGQVSLNISAGRLGDVLD---HAVATALADGSAR 763 Query: 669 IKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKN 725 ++V D +D RL Q+F +++NA + + + AR +G ++F + Sbjct: 764 LRVERDAATDDMRLSSDLDRLAQVFINLIANADKYCTAADPQLRITARQSGHWLFIDFID 823 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 NG IP ++F +F S + G GLGL+I + GG V+ S + G Sbjct: 824 NGDGIPPAFRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVAYLSGEVG 877 >gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] Length = 587 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|310640162|ref|YP_003944920.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245112|gb|ADO54679.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 589 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E E ++ + ++ F + S+EL++PL+ I GF + L+ G KQ Y+ Sbjct: 353 ANQQLVEDMEQKQRMEAVQQDFFANASHELKTPLSIIKGFAEGLQD---GVSAGKQDHYM 409 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + + LV D+LDLA +++G +KL +T +L++L+ EV + + E + + Sbjct: 410 KVIVEEADKMERLVKDMLDLAKLESGTLKLRKATFILSELVEEVVDKLFHLLKEKKLEVV 469 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +I +L AD + Q+ + NA+ + +GS++ ++ FS++N G +I Sbjct: 470 IIPANEL-PIHADIGWMEQVIINFVVNAIRHAEEGSSITIRIEGSGEVNTFSIENKGETI 528 Query: 731 PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 P+D + ++NRF + Q G GLGLSIV+ ++LH ++ +GV Sbjct: 529 PDDQLELIWNRFYRAELSRSRQTGGTGLGLSIVKRILDLHEFRYKAENTKDGV 581 >gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 622 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L + Y+ Sbjct: 382 EEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E + + Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 D F DR RL QI +L+NA+ + KG I F V + G Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCG 555 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGLGL+I + + GG++S+ S + +T +P Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 Query: 790 SK 791 K Sbjct: 614 MK 615 >gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 2099 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L++KQ ++ Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSAKQVEF 1465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LLNL++DILDL+ +++G + ++ I +++LL + + + N+ Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRNLSF 1525 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V + S + D +RL QI +LSNA F+++G + A+ +G Sbjct: 1526 AVEVGADVTKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASVTSGWSPEHPSLRHA 1585 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G IP + + +F F R+ G GLGL+I NL GG + Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645 Query: 774 ISSS 777 + S+ Sbjct: 1646 LRSA 1649 >gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 631 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 20/242 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615 +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I++ Sbjct: 242 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVIAS 296 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670 S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + + Sbjct: 297 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLELH 353 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V L + D RL Q+ +LSNA+ F+ + +K RD+G + SV ++G I Sbjct: 354 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGI 411 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R Sbjct: 412 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 471 Query: 788 IP 789 +P Sbjct: 472 LP 473 >gi|293607347|ref|ZP_06689686.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] gi|292814191|gb|EFF73333.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] Length = 939 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 22/314 (7%) Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTD 547 R++ + GW I+++ DE G L+D Y S P + ++D Sbjct: 384 RWFQGTPGWR--TEILSAQGDE----AGREHRLNDGRTAYLSFAPTTYRGEAVVLCGISD 437 Query: 548 SV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 R E++L + A++ K F+ +S+E+R+PL I+G +L +++ + Sbjct: 438 ISALKRIEQSLLQAKRDAEAANQAKTVFLTTMSHEIRTPLYGILGTLELFSLTRV---SG 494 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q+QY+E I SS LL +ND LDL+ ++AG L + +LLN V S A + H Sbjct: 495 QQAQYLETIQQSSATLLRTINDTLDLSRIEAGHTVLERAPFSPVELLNNVVASFAARAHA 554 Query: 665 NNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA---ARDNGDF 719 +R ++D + + D R+ QI + +NA+ F+ G V+ LK RD+ D Sbjct: 555 KGVRSYAVADPDAPPAVIGDATRIRQILDNLANNAIKFTDSGQIVLRLKVNSRTRDSVDL 614 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISS 776 F + + G+ I +F + V + G GLGLSI S ++ G + ++S Sbjct: 615 CFQIADTGAGIAPKHQARLFEPYYQVDADNCVTLPGTGLGLSICRSLSDMMNGRLNAVSE 674 Query: 777 SDEGVT-TINCRIP 789 G + T R+P Sbjct: 675 PGLGTSITFEIRLP 688 >gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1329 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 17/245 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ML+ +++++ V A E A + K+ F+ ++S+E+R+P+ IIG L++ +K Sbjct: 562 MLSMIDISEVVAAR-------EIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETK 614 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L + +Q ++E IS ++T LL ++N+ILD + ++A L + +VL D++ EV Sbjct: 615 L---DERQLGFIERISHAATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALA 671 Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716 ++ I + V D ++ + D RL QIF+ +++NA F+ GS T+ +K + Sbjct: 672 EVRIAGRPIELIVDIDPEIPEVLMGDPLRLSQIFTNLINNATKFTESGSITLQIKQEQVI 731 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 G+ I FSV + G + D +FN F R+ G GLGL I +S + L GG Sbjct: 732 GNNIKLSFSVIDTGIGMTTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGE 791 Query: 772 VSISS 776 + + S Sbjct: 792 LQVES 796 >gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 717 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 14/272 (5%) Query: 532 PLPNAQTMLTFVN-VTDSVRAE-RALTEKNEALRKADEI-------KNSFVQHVSYELRS 582 P A M T N V D +E R + LR A ++ K+ F+ ++S+ELR+ Sbjct: 433 PFTEAGEMATRYNLVLDKFNSEVRKREQTANDLRDARDVAELANASKSQFLANMSHELRT 492 Query: 583 PLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 PL IIGF++++ G + N + YV I SS+ LL+L+NDILDL+ ++A +L Sbjct: 493 PLNAIIGFSEVMNGELFGPIENERYKDYVGDIHKSSSHLLSLINDILDLSKIEADRYELY 552 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + + D++ ++ + + E + +KV + +L +AD++ L QI ++SNA+ F Sbjct: 553 EEELDVMDVVASCERMMRHRADEAGVALKVTVEDELPLLMADKRALRQIVLNLVSNAVKF 612 Query: 702 SSKGSTVILKA-ARDNGDFIFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLG 757 + KG + L A +G F V + G + + + F + +++ G GLG Sbjct: 613 TPKGGLIQLGAFMEPDGRMAFRVADTGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLG 672 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L + + LHG + I S TTI R+P Sbjct: 673 LPLTRALARLHGASLVIESEPGEGTTITIRMP 704 >gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida KT2440] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ + +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + +I Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731 S V D RL QI + ++SNA+ F+ +G T++++A D SV++ G + Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 648 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I Sbjct: 257 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 311 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668 ++S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 368 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V L + D RL Q+ +LSNA+ F+ + +K RD+G + SV ++G Sbjct: 369 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 426 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 I + +F RF Q G+GLGL+IV+ + +HGG V +S G T Sbjct: 427 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 486 Query: 786 CRIP 789 R+P Sbjct: 487 VRLP 490 >gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 822 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 529 SIIPLPNAQTMLT-FVNVTDSVRAERALTEK-NEALRKADEI---KNSFVQHVSYELRSP 583 +I P+ + ++T FV V + + R E+ EA R A+ K+ F+ +S+ELR+P Sbjct: 405 TISPVTDDSGVITHFVAVEEDATSRRDGEEELREAKRMAEAASLAKSEFLSSMSHELRTP 464 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + I+GF LL + SL +Q Y + I S LL+LVNDILD+A ++AG + L++ Sbjct: 465 MNAILGFAQLLTNADNDSLGERQRFYADSILKSGNHLLSLVNDILDMARIEAGRLSLSFE 524 Query: 644 TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + + ++ E+ IA + I IS + AD RL Q + SNA+ ++ Sbjct: 525 RVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLKQALINLASNAVKYN 584 Query: 703 SKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760 G TV + + G +V + G IPE VF F A G G+GL+I Sbjct: 585 RTGGTVRFSISHGETGPVRIAVSDTGIGIPEKRRTEVFQPFARLGAEASTVEGTGIGLTI 644 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 + + GG + + + TT IP Sbjct: 645 TKMLVEAMGGQIGFFTQENLGTTFWLEIP 673 >gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 646 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 13/266 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPL 584 N Q + + TD + A E+++ L+ A++ K+ FV VS++LRSPL Sbjct: 380 NGQPVRVVGSATDISDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPL 439 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G++ LL+T +L S ++ +E I ++ L+ D+LD++ + G ++L + Sbjct: 440 NAILGWSQLLRTRQLD--ESTFTRALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCL 497 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L ++ ++ +I +K + D + D RLLQ+ +LSNA+ F+ Sbjct: 498 VELPAIIGVAIETAYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPP 557 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 + ++ + + + +V + G I + VF R+ + ++ G+GLGL+I Sbjct: 558 EGQITVQLSYTDSEAHITVIDTGIGIKSEFLPYVFERYRQADCQHKQHGLGLGLAIARYL 617 Query: 765 INLHGGHVSISSSDEGV-TTINCRIP 789 I LHGG + ++S EG TT ++P Sbjct: 618 IELHGGAIHVNSLGEGQGTTFTIKLP 643 >gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 590 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 36/354 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ G NI A S L Sbjct: 262 MADGVITFSRDGTILVTNPPAERFIQNWYYEQ-----GEESTNIEAVPSEVMK------L 310 Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 F + + ++ +QG + ++ S PL N TF+ +V R +TE Sbjct: 311 FQRAVDTGKEQIGEMPIQGRIWVIIVS-------PLYNN----TFIR--GAVAVLRDMTE 357 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + R+ D+++ F+ +VS+ELR+P+ + G+++ + + + ++ + I S Sbjct: 358 E----RQLDKLRKDFIANVSHELRTPIAMMQGYSEAI-VDDIAGTDEEKKEMASVIYDES 412 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LVN++LDLA ++AG ++L + L ++ + + E I+++ Sbjct: 413 LRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIKLESEFSITE 472 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 FV D R+ Q+ + ++ NA+ + + +V + + + V ++GS IPE+ Sbjct: 473 DDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVKSEEKGLMVEVSDSGSGIPEEDLPF 532 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF RF A R G GLGL+I ++ I+ H G +S+ S + TT + IP Sbjct: 533 VFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFSFVIP 586 >gi|319902564|ref|YP_004162292.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319417595|gb|ADV44706.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 622 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +E AL E E ++ +K++F+ ++S+E+R+PL I+GF+D+L S GS +Q Sbjct: 381 DLQESEGALLEAKERAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGSSEEEQ 438 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHEN 665 Y E I +S +LL L+NDILD++ ++A +K + + ++ S+A + +N Sbjct: 439 RSYFEIIKTNSDLLLRLINDILDVSRLEADRVKFKSEDCNVALVCRQIVASVAQARKSDN 498 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724 + SD D QRL Q+ +LSNA F+ G+ T+ L+ RD +FSV Sbjct: 499 RFLFECGSDSV--KIRTDVQRLQQVVINLLSNADKFTKNGTITLKLEINRDGNMAVFSVT 556 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G IP D VF RF Q G GLGLSI + GG + I + Sbjct: 557 DTGCGIPLDKQGLVFERFEKLNEYMQ--GTGLGLSICKLTTEKWGGKIWIDPT 607 >gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 1437 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 126/251 (50%), Gaps = 14/251 (5%) Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V AER + EA + A E K+ F+ +S+E+R+P+ ++G +LL+ +KL Sbjct: 809 VTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q Q V + S LL++++DILD A V+AG + ++ S L ++ + +A++ HE Sbjct: 866 EQKQMVSLVQDSGRALLHILDDILDYAKVEAGRLDISPSATDLREVFDGTVGLLASRAHE 925 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719 + + V ++ + V+ D RL QI +LSNA+ F+ GS + D D Sbjct: 926 KALAMHVDVAAEVPASVSVDGIRLRQILFNLLSNAIKFTDAGSVRLSAKCTDVTDDTAHL 985 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G I ++ ++F FV RR G GLGL+I L GG + + S+ Sbjct: 986 AISVSDTGIGISPEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGELVMESA 1045 Query: 778 DEGVTTINCRI 788 T + R+ Sbjct: 1046 PGHGTAVTLRL 1056 >gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] Length = 1963 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1353 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1412 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M+++ + I L L++ V+ + E N+ Sbjct: 1413 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1472 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ +I A D D I Sbjct: 1473 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1532 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I E + +F F R+ G GLGLSI Sbjct: 1533 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1592 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1593 LLGGEIDAQSQPGRGSTFTLYLP 1615 >gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] Length = 901 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++ E+AL + KA ++K+ F+ ++S+E+R+P+ + G LLK L S Sbjct: 512 DLTEQLKREQALAHAKDRAEKAVKVKSEFLANMSHEIRTPMNGLFGVMQLLKQENLSSDG 571 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Y + + T++ +NDILD + ++AG + L + L++L+ + ++ Sbjct: 572 KNLLDKALYSAKNLTVI---INDILDFSKIEAGKLTLELTNFKLSELIEHINSDLSVNAF 628 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS 722 I + + K + D R+ QI I+SNA+ F++ G V++ A + S Sbjct: 629 NKQIDLTFEINVKHDFWFGDPIRIRQILLNIISNAIKFTNTGGVKVLVNALPTSNGLQIS 688 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I D + +FNRF R+ G GLGLSI +S I+L G +S++S + Sbjct: 689 VIDTGIGIAPDAIERLFNRFEQADKSTTRKYGGTGLGLSISQSLIDLMQGEISVTSEENK 748 Query: 781 VTTINCRIP 789 T+ + IP Sbjct: 749 GTSFSIMIP 757 >gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501] gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501] Length = 1068 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 10/216 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+ELR+PL I+GFT +++ + LN Q +E I S LL L+NDIL Sbjct: 602 KSEFLASMSHELRTPLNAILGFTQVMQRDQ--ELNPDHKQNLEIIGRSGEHLLELINDIL 659 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 ++ ++AG N + L LL+ ++ + K E N+++ L ++ D +L Sbjct: 660 EMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETDESKL 719 Query: 688 LQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741 Q+ +L NA+ F+ +G ++ + DN + I F V++ G I + +F Sbjct: 720 RQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQLFEA 779 Query: 742 F-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F + R G GLGL I + F+ L GG +S+SS Sbjct: 780 FGQTETGRNSNEGTGLGLPISQKFVQLMGGEISVSS 815 >gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1] Length = 917 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ + +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + +I Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731 S V D RL QI + ++SNA+ F+ +G T++++A D SV++ G + Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 631 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + L E +A+++K++F+ ++S+E+R+PL I+GF++LL + + +Y Sbjct: 392 KTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQVED---KEEMKEY 448 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ +LL L++DILD++ +++G+ + + +N +++E++Q K+ + + Sbjct: 449 ADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQ--VGKLRIKSEEL 506 Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + D +L + D+ RL Q+ +L+NA+ F+S G + +D F V + G Sbjct: 507 VLTFDEQLPQCILYTDKNRLTQVIINLLTNAIKFTSGGEIRMGYRLKDAATLYFYVSDTG 566 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + C+ VF RFV + +G GLGLSI I GG + ++S Sbjct: 567 CGMSTEQCEHVFERFVK--YNPFIQGTGLGLSISRMIIEKLGGEIGVTS 613 >gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB] gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB] Length = 1028 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 106/417 (25%), Positives = 188/417 (45%), Gaps = 56/417 (13%) Query: 401 HVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 H ++ + +G ++ + NLT V E Q + L EGV DG Sbjct: 465 HTVIDTADKGPMMFCLDINLTELVHTEQALIESESRQRMILQTLGEGVYGTDLDGVCTFI 524 Query: 460 NPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA----IITSFDDERKSL 514 NPA L E+ L TH +++ +DG L A I+T+ D + + L Sbjct: 525 NPAALDYLGLQEDEALGKNTH-------TLFHHHRADGTPLPLAECPLILTARDGQSRRL 577 Query: 515 QGT----------LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL--------- 555 + + L + L +I +++F +++++ R + L Sbjct: 578 EDVFWRKNGECFPVRLTITAKLRDGVI----TGVVVSFADISENRRVAKELEQHHTHLEA 633 Query: 556 -----TEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 TE+ E R+A E K++F+ ++S+E+R+PL ++G LL+ + +Q Sbjct: 634 QVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRD---APTLEQ 690 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ I ++S LL ++NDILD++ ++AG + L+ +T+ + +L V + + + Sbjct: 691 IDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKG 750 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFI-F 721 + ++V++D +F+ D R+ Q NA+ F+ GS + LKA R NG I F Sbjct: 751 LELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFTEHGS-ITLKARRMADDSNGVLIRF 809 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V++ G I +D +F F R+ G GLGL+I L GG V +SS Sbjct: 810 EVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSS 866 >gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM 2160] gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain protein [Natronomonas pharaonis DSM 2160] Length = 628 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 15/276 (5%) Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 VLE + IP A T T V ++T+ ER L + LR+++E F VS++ Sbjct: 356 VLETTKIPFEVAGTDETAVLGYARDITERDTYERELDARRRELRESNERLQQFAYVVSHD 415 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 L+ PL + + DLL++ L+++ +Y+++ + + +++ +L + V+ Sbjct: 416 LQEPLRMVSSYLDLLESEYSDDLDAEAREYIDFAVDGAERMSRMIDALLSYSRVE--TRG 473 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + + E + + ++ E N RI+ L + +ADR +L Q+F +LSNA+ Sbjct: 474 EEPAPVDAAAVFEEAHRDLKQRIEETNARIEA---DDLPTVLADRSQLGQLFRNLLSNAI 530 Query: 700 DFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGL 756 +++ V+ + R NG+++F+V + G I E + +F F NA RG G G+ Sbjct: 531 EYAGDEPPVVDVAVERQNGEYVFAVADEGVGIHERDREDIFEVFQRGRNADRGS--GTGI 588 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GL+I ++ HGG + + S+ TT +P+ E Sbjct: 589 GLAICRRIVDRHGGDIWVDSTVGDGTTFYFTLPAPE 624 >gi|323694713|ref|ZP_08108873.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501228|gb|EGB17130.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 895 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A AL KNE LR ++ ++ +S++LR+PLT+I G +L +S+ K+ + Sbjct: 655 AAAALLAKNEQLR------SNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLY 708 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I S L+NLV ++L + ++ G MKL +T +L++++ E + + E+ I+IK Sbjct: 709 EDIYDDSLWLINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIK 768 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D L AD + ++Q+ ++ NA+ ++ GS V+++ R+ + +V +NG I Sbjct: 769 QEEDFLL--VKADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI 826 Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774 ++ + +F+ F + A + RR +GLGL++ +S I HGG +S+ Sbjct: 827 SDESKEHIFDMFYTAATKIADSRRSLGLGLALCKSIITAHGGTISV 872 >gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1334 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 14/241 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ +Y Sbjct: 753 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 812 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + N+ Sbjct: 813 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRPMTMQKNLDF 872 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---GDFI---- 720 V + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ G + Sbjct: 873 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPATDDEVPGSVVRGGS 932 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IPE +S+F F R+ G GLGLSI +L GG V++ Sbjct: 933 VVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 992 Query: 776 S 776 S Sbjct: 993 S 993 >gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19] Length = 2129 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A ++L EK E L + K+ F+ ++S+ELR+PL +++ L + G+LN +Q +Y Sbjct: 1415 ARKSLEEKAEQLTLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENAEGNLNDRQIRYA 1474 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + L+ L+NDILDL+ +++G + N S++ + ++ + V+ + N+R + Sbjct: 1475 KTIHSCGDDLIQLINDILDLSKIESGFISANISSVKIGEITSFVETTFKPISEARNLRFR 1534 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR---------DNGD 718 + +D +L S D QRL QI +LSNA F+ KG S I A + D+ Sbjct: 1535 IETDYELPASMETDIQRLNQILKNLLSNAFKFTEKGEVSLRIYSAKKSWKPGLPTLDSAP 1594 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + FS+ + G IP++ +F F R+ G GLGLSI L GG + + Sbjct: 1595 TVVAFSISDTGIGIPQEKQLIIFEAFQQAEGSTSRKYGGTGLGLSISRGLAELLGGTIEL 1654 Query: 775 SSSDEGVTTINCRIP 789 S +T IP Sbjct: 1655 ESQAGMGSTFTLYIP 1669 >gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 478 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 3/233 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +++E R A + K+ FV +S+ELR+PLT+I G DL ++ KLG + S ++ Sbjct: 237 LRKEHEKSRAAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGKTSKNVSAALKMAQ 296 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L++ ILD + ++G M L +L+ + S+ E I ++ Sbjct: 297 RNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKGISLRSEFP 356 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + D+QRL Q+ IL+NA++FS K S +++ DNG ++ G + E Sbjct: 357 DREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFLQTDNGKVRILFRDTGIGLSESD 416 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784 VF+ F R G GLGLS+ + HGG ++ +SD G T + Sbjct: 417 EARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTTFV 469 >gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis] Length = 1369 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 125/218 (57%), Gaps = 12/218 (5%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ ++S+E+R+P+T ++G +LL +L +++Q +YVE I +S+T LL ++NDI Sbjct: 798 LKSQFLANMSHEIRTPITGVLGMAELLSGMQL---DAEQQEYVENIQSSATSLLTVINDI 854 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--ADR 684 LD + V++G + + L+ ++ EV + + + N+ + I DG V D Sbjct: 855 LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDIGDGIENDLVVIGDP 914 Query: 685 QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 R+ QI + +L+N++ F+++G S K ++ + F+V+++G I +D+ K +F Sbjct: 915 GRVRQILTNLLTNSIKFTNQGYVRFSVTAEKETSESIEVRFTVEDSGIGIQDDVRKKLFQ 974 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++ ++L G +S+ S Sbjct: 975 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1012 >gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 587 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|46576353|sp|O34206|KINB_PSEAE RecName: Full=Alginate biosynthesis sensor protein kinB gi|2352098|gb|AAB68790.1| histidine protein kinase [Pseudomonas aeruginosa] Length = 595 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 163/347 (46%), Gaps = 35/347 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + +G+ +F GRI+ +NP A R L+ + + G I I + E+ Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314 Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550 + A++ DE +L+ D +L +S+ P+ P ++ + V D Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +TE+ R + +++ FV S+ELR+P+T + LL+ S+++ + Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + L+ L+ND+L+ + G+ KL ++ L DLL + +Q K + ++ Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + +L DR ++ ++ +L NA+ SS+G + L+A R + +V++NG I Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 P +F FV + + G GLGL + + I LHGG +++ S Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLELCKEIIQLHGGRIAVRSQ 582 >gi|315181101|gb|ADT88015.1| sensor histidine kinase FexB [Vibrio furnissii NCTC 11218] Length = 781 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LDPEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 MQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAPLNFEEFVAELESLSALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + V D RL Q+ ++SNAM F+ +G V+ +A GDF + +++ Sbjct: 381 DLERLTDLPALVEVDATRLRQVLWNLISNAMKFTKEGGVVMSVSAEVEGDFANIVMDIED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 G IPE +F + S G G+GL++ INL GG +S+SS + Sbjct: 441 TGIGIPESELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMGGDISVSSEE 496 >gi|170016614|ref|YP_001727533.1| Signal transduction histidine kinase [Leuconostoc citreum KM20] gi|169803471|gb|ACA82089.1| Signal transduction histidine kinase [Leuconostoc citreum KM20] Length = 369 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 SD +++ P Q ++ N + + R R E R ++ K+ + ++S++L Sbjct: 94 SDMTIDWHAHYAPRTQALIDVSNKIAKNTRKIR------EEERASERSKDEMITNISHDL 147 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT IIG+ L++ + +++Y+ S + LV D+ + + A L Sbjct: 148 RTPLTAIIGYLGLVEMNATTLSPEDRAKYIHTAYDKSNQMKILVEDLFEFSKTQARDAVL 207 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N +TI L DL ++ S + HE+ I + I++ +L AD +L ++ +++NA Sbjct: 208 NLTTISLGDLFAQLLASYEIEAHEHQIEMMQITNPELIILEADSDKLARVLINLITNAFK 267 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + + + L A + V NNG IP++ +F+RF V ++ + G GLGL Sbjct: 268 YGEGATYIKLTAQVKAQEVEIRVINNGVQIPQEALLEIFDRFYRVESSRNSKTGGTGLGL 327 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +IV+ I HGG V ++SD +TT +P K+ Sbjct: 328 AIVKGIILQHGGTVR-ATSDAELTTFIMTLPLKQ 360 >gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 918 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 16/285 (5%) Query: 511 RKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEI 568 R +G + LLS + Y++ L A+ + F + D+ + R + N A Sbjct: 491 RDRTRGAITLLSTEPSRRYTVEDLALAEELCNFAALALDNAQLYRESQQVNRA------- 543 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDI 627 K+ F+ +S+ELR+PLT I+G+ +L+ GSL + +E I + T+ LV D+ Sbjct: 544 KDEFLATLSHELRTPLTAILGWARMLRQ---GSLKPDTHVRALEAIERNGTLQAQLVEDL 600 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + + G ++L+ + L ++N ++ I + V D G D+ RL Sbjct: 601 LDASRIITGKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRL 660 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ +LSNA+ F+ +G V ++ R G V + G I + VF+RF Sbjct: 661 QQVVWNLLSNAIKFTPRGGKVSIQLGRAEGLARIQVSDTGQGIVPEFLPYVFDRFRQADS 720 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+I I LHGG V S+ +G T IP Sbjct: 721 TSTRPHSGLGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIP 765 >gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1121 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 6/240 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++ V E L + + E K SF+ ++S+E+R+P+ IIGF+D+L S++ Sbjct: 514 LDISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAIIGFSDILLESEISGE 573 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N K ++ IS S+ LL+L+NDILD A ++ ++L+ VL + ++ V ++ + Sbjct: 574 NKK---HLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQA 630 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + I +++ R+ Q+ IL NA+ F+ KG + +G F Sbjct: 631 RNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEKGHVTLNVLKLQDGKIRF 690 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SV ++G IPE+ +F+ F RR G GLG SI + + L GG + ++S E Sbjct: 691 SVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQLVTLMGGQIHVTSEAE 750 >gi|219848900|ref|YP_002463333.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543159|gb|ACL24897.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 752 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 20/280 (7%) Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEAL 562 I F D+R L L D+ + S+ P+ T+L +V V LTE+ Sbjct: 456 IPGFGDQRAQ---DLFALGDAFIRLSVAPVKEENGTLLGYVAVLQD------LTEEV--- 503 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 D K +F+ +S+ELR+PLT I G DLL G L+ +Q +VE I + + N Sbjct: 504 -MVDRAKTNFIGTISHELRTPLTVIRGNADLLLRGLAGPLDEEQKSFVESIRLHANNMTN 562 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+++++ +A +D+G +K N I + + + + +++ +++++ KL + +A Sbjct: 563 LISNVITIANLDSGSLKSNLEPIEVRRPIEDAVWQVQSQIKAKGLQLEIAIPKKLPTVLA 622 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + I ++L NA +++ G T+ ++A V + G IP M + +F RF Sbjct: 623 DVDHVRTIMIQLLDNARRYTNAG-TITIRAIPQPDMMRIEVSDTGRGIPPHMHEQIFERF 681 Query: 743 V-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + S RG+GLGL+I + + GG + + S+ Sbjct: 682 IRGEGTSEGINSSERGIGLGLAIAKQLVERLGGTIGVEST 721 >gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 678 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I Sbjct: 287 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 341 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668 ++S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 398 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V L + D RL Q+ +LSNA+ F+ + +K RD+G + SV ++G Sbjct: 399 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 456 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 I + +F RF Q G+GLGL+IV+ + +HGG V +S G T Sbjct: 457 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 516 Query: 786 CRIP 789 R+P Sbjct: 517 VRLP 520 >gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator [Pseudomonas mendocina NK-01] gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator [Pseudomonas mendocina NK-01] Length = 1230 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 7/223 (3%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 +SF+ ++S+E+R+P+ IIGFTDLL + L+ Q +++ + SS LL L+NDILD Sbjct: 658 SSFLANMSHEIRTPMNAIIGFTDLLLETP---LSPDQRRHLSTVQHSSRSLLGLLNDILD 714 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLL 688 A +D G ++L L +L +V + +++ + +G F + D RL Sbjct: 715 TAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRLQ 774 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q+ + +L NA+ F+ +G V LK + + G +VK+ G I D + +F F Sbjct: 775 QVLTNLLGNAVKFTQQGE-VRLKVSGEPGAMRLAVKDTGIGIAADRLEKIFEPFAQADAS 833 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLG +I + L GG + + S++ + + +P Sbjct: 834 MSRRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELP 876 >gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 1223 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ +VT+ E L AD K+ F+ ++S+E+R+P+ ++G +LL S Sbjct: 641 LIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS- 699 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+++Q + + I S LL ++NDILD + ++AG MKL + + +V + Sbjct: 700 --NLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLL 757 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--D 715 ++ E NI + V I G + D R Q+ + ++ NA+ F+ G +I +A+ + Sbjct: 758 SSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELSAQSAE 817 Query: 716 NGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + I S V+++G IP D +++F++F RR G GLGL+I + L G Sbjct: 818 ASETILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGT 877 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S +T IP Sbjct: 878 INVVSEVGKGSTFEVNIP 895 >gi|260767346|ref|ZP_05876285.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii CIP 102972] gi|260617669|gb|EEX42849.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii CIP 102972] Length = 781 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LDPEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 MQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAPLNFEEFVAELESLSALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + V D RL Q+ ++SNAM F+ +G V+ +A GDF + +++ Sbjct: 381 DLERLTDLPALVEVDATRLRQVLWNLISNAMKFTKEGGVVMSVSAEVEGDFANIVMDIED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 G IPE +F + S G G+GL++ INL GG +S+SS + Sbjct: 441 TGIGIPESELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMGGDISVSSEE 496 >gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 785 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 144/270 (53%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL +++ ++ Y I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I T +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + L R + D VK+ G I + +F RFV Q G GLGLSI Sbjct: 555 YEGE-IRLGFGRMDKDIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1229 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 11/249 (4%) Query: 541 TFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 FV++T+ +AER E A+ IK+ F+ +S+ELRSPL I+G+T L Sbjct: 822 AFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNPILGWTKL 881 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+T + + ++ + I ++TI + LV+D+LD+A + G + L + L + Sbjct: 882 LRTRQFDPAATDKA--LATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVDLAIAIKA 939 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +++ +I+I+ GK+G D RL Q+ +LSNA+ F+ G V + A Sbjct: 940 AIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGGQVEVTLA 999 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + +VK+ G I D+ +F+ F ++ Q G+GLGL+I ++LHGG Sbjct: 1000 TVDEFAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHLVDLHGGI 1059 Query: 772 VSISSSDEG 780 + S EG Sbjct: 1060 IQADSPGEG 1068 >gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 617 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 E+ + NE+ R+ +++ F+ +S+EL++PL I +L K + + K+ QY Sbjct: 340 VEKNIELLNES-REYNKLITDFLAKISHELKTPLNVIFTAVQILDLYKEDAKSYDKKEQY 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI I Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D + D ++ +I +LSNA+ F+ G + + + I SVK+ G Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ +++F+RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 519 IPENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567 >gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 601 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ S +AE L EA +A + K F+ +++E+R+P+ ++G LL +G LN Sbjct: 199 NLKLSEQAEE-LERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLLA---MGDLN 254 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ Q V I+ + L++++N+ILD + ++A + L +++NEVK +A + Sbjct: 255 EKQKQQVTVINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEVKLLLAPQFE 314 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + I +K S + SFV D RL QI ++ NA F+ KG I +++++ Sbjct: 315 KKPITLKS-SIENIPSFVLGDPFRLHQILYNLVGNAFKFTEKGEISIEVSSKESDAENTV 373 Query: 719 -FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSIS 775 FSVK+ G I PED + +F +F +H RG GLGLSI + + L GG +S++ Sbjct: 374 ILSFSVKDTGIGISPEDQ-EQIFEQFYQVSHFDPNIRGTGLGLSITQRLVELMGGTISLT 432 Query: 776 S 776 S Sbjct: 433 S 433 >gi|207744619|ref|YP_002261011.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206596025|emb|CAQ62952.1| composite two component regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 1003 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ERA + EA R+A E K+ F+ +S+E+R+P+ ++G +LL + L +Q Sbjct: 361 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 417 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + V SS LL++++DILD A ++AG + + + L +L + +A + HE ++ Sbjct: 418 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 477 Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722 ++V D + + V+ D RL Q+ S +LSNA+ F+ +G S + AA D I Sbjct: 478 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 537 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G I + ++F FV RR G GLGL+I L GG + + S+ Sbjct: 538 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 597 Query: 781 VTTINCRI 788 TT+ R+ Sbjct: 598 GTTLTLRL 605 >gi|254487835|ref|ZP_05101040.1| conserved hypothetical protein [Roseobacter sp. GAI101] gi|214044704|gb|EEB85342.1| conserved hypothetical protein [Roseobacter sp. GAI101] Length = 503 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/356 (23%), Positives = 159/356 (44%), Gaps = 21/356 (5%) Query: 201 SLDFLVWHRDQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259 SLDF +WH D+ G +LW+N ++++ + T+ Q + LF E + S Sbjct: 147 SLDFPIWHTDKDGKLLWSNEAHQQLHAATDPTASQG----DQPLFATE--PALPSGRVFL 200 Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNS--FGEAGIAID--VSKEITVNDQLTHTYEILHNL 315 +N +E G +++ + I I+ V E T + + L Sbjct: 201 RN-------VESGKKDWFELSQTEQDGVICHQAICINALVQAEETQRKFVQTLTKTFAQL 253 Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375 ++ +AIFD+N L N + ++L + FL+ P+ + LR K+PE ++ W+ Sbjct: 254 SIGLAIFDRNSQLVLFNPALIDLTGLRAEFLSARPTVQTFFDKLRETRKMPEPKSYSNWR 313 Query: 376 ENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 I + +++ +++TW L +GQT +V +P G T ++ E+++ +V L + + Sbjct: 314 TAITEMIRAAHDGRYEETWSLDSGQTFNVKGRPHPDGATAFLIEDISAEVSLTRNFRAEL 373 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 ++ +D L +G+AVF G + SN A++ LW+ + + + R Sbjct: 374 ELGQSMLDTLDDGIAVFSASGILTFSNSAYQDLWQVDHETSFADVTVHDAIQDWKRKCAP 433 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 W I F D R++ + L + + L I P+ T++ F V ++V Sbjct: 434 HLMWKEIEDFIRDFGD-RRTWHMPMYLANGTQLNCIISPIVAGATLIRFDIVKNAV 488 >gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 1810 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1322 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1381 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1382 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1441 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1442 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNAIREHLLEA 1501 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +GD I FSV + G I +F F R+ G GLGLSI Sbjct: 1502 GSLRDADGDLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1561 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1562 LLGGEIHAASEPGRGSTFTLYLP 1584 >gi|300021814|ref|YP_003754425.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523635|gb|ADJ22104.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 294 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 545 VTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++D+V RA ++ A A ++K+ F+ ++S+EL++PL +IGF+ LL + Sbjct: 22 LSDAVLRHRARVAEHSARIETELASKVKSEFIANMSHELKTPLNTVIGFSKLLTQHQERR 81 Query: 602 LNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L K+ +Y I+ ++ LL+++NDILD++ + +G ++ I L D+L + + Sbjct: 82 LPDKEIVEYATLINDAAGHLLSVINDILDISKLQSGKYAIDSREINLRDILADSIDAFHH 141 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD 718 + +I + V L D +L QIF+ +LSNA+ F+ TV +KA R D+G Sbjct: 142 QSRVGDIDVDVAIAADLPLIRGDAVKLKQIFTNVLSNAIKFTPADGTVAVKAQRTADHG- 200 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I +++++G + D F V R G GLGL I ++ + LHGG + I+S Sbjct: 201 AIVAIRDSGVGMSPDEIDVAMAPFGQVDGGRSRWREGAGLGLPIAKALVELHGGALYIAS 260 Query: 777 SDEGVTTINCRIPSKE 792 T + P ++ Sbjct: 261 QQNEGTEVVITFPGRD 276 >gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 2037 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R+L EK E L+ + K+ F+ ++S+ELR+PL +++ L + G+LN KQ +Y Sbjct: 1326 ARRSLEEKAEQLQLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENHDGNLNEKQVRYA 1385 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + L+ L+NDILDL+ +++G + ++ + N++++ V+ + ++R + Sbjct: 1386 KTIHSCGDDLIQLINDILDLSKIESGYISTDFIKVRFNEVVSFVETTFKHISESKSLRFR 1445 Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR---------DNGD 718 + D +L S D QRL QI +LSNA F+ KG I +A R D+ D Sbjct: 1446 IEMDEQLPQSLETDVQRLNQILKNLLSNAFKFTEKGEVKLRIYEAKRNWRLMNGSLDSAD 1505 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + F +++ G I +D +F F R+ G GLGLSI +L GG + + Sbjct: 1506 RVVAFEIRDTGIGISKDKQNIIFEAFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIEL 1565 Query: 775 SS 776 S Sbjct: 1566 ES 1567 >gi|254476675|ref|ZP_05090061.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] gi|214030918|gb|EEB71753.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Ruegeria sp. R11] Length = 892 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 8/234 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R R L E NE L + + K++F+ VS+ELR+P+T+I F+++L+ + S + ++Y Sbjct: 649 RTARKLQETNEKLTQISQQKDAFLSQVSHELRTPMTSIRAFSEILRDADHLS-ATDHTRY 707 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + L L+ND+LDL+ ++ G + LN+S L D+L+ ++AT + + + + Sbjct: 708 AGIIHDEALRLTRLLNDLLDLSVLENGQVTLNFSAGRLGDVLD---HAVATALADGSADL 764 Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726 +V+ D D RL Q+F +++NA + + + A+++GD++F +N Sbjct: 765 RVLRDDATDDLRLSTDLDRLSQVFINLIANAEKYCTAEQPQLRIVAQESGDWLFIDFIDN 824 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 G+ IP + ++F +F S + G GLGL+I + GG V + EG Sbjct: 825 GAGIPPEYRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVGYLAGQEG 877 >gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] Length = 763 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 13/249 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T AE+ L +A K+ F+ +S+E+R+P+ +IGFT+LL + Sbjct: 366 IDITRRKIAEQELINAKVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQNNPAQ- 424 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q +Y+ + S LL L+NDILD + + G + L +LL +++++ Sbjct: 425 --EQLEYLNLLKFSGENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQAA 482 Query: 663 HENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-- 719 + + + + D + S V D RL QI +++N++ F+S GS V + +++ D Sbjct: 483 RDKGLELTLTVDQSIINSIVGDPVRLGQILINLITNSIKFTSSGS-VSIDVWKEHEDLEH 541 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F + + G I ED +F+RF + R+ G GLGLSI + I L GG +S+ Sbjct: 542 ITICFEIADTGIGIAEDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQGGSLSV 601 Query: 775 SSS-DEGVT 782 +S +EG T Sbjct: 602 TSKLNEGST 610 >gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 932 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 11/246 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QY 609 A L NE L++ D++K+ FV VS+ELR+PLT+I F ++L + +++ Q ++ Sbjct: 663 ATEELRAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNP--EMDADQRREF 720 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNI 667 +E + S L L+N +LDL+ +++G + + L+ L E +S + + Sbjct: 721 LEVVVRESERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQL 780 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI-FSVKN 725 I++ SD + D RL+Q+ +LSNA F+ G V L+ + GD + SV + Sbjct: 781 HIEIASDDN--AIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTD 838 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG I + + +F++F +S G+ +G GLGL+I + H G + + S + Sbjct: 839 NGPGISAEDQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGAS 898 Query: 784 INCRIP 789 C++P Sbjct: 899 FVCKLP 904 >gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 758 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 12/233 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER + K EA A+ K+ F+ ++S+E+R+PL I+G +L+ ++G +N KQ + Sbjct: 369 ERLIAAKLEA-ESANIAKSEFLANMSHEIRTPLNGIMG---MLQLMRMGEMNQKQEEQCG 424 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S L L+ DILD+ +++G +++ + L++ LN V+ + NI ++V Sbjct: 425 FAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFKPAAIQKNIDLRV 484 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDF--IFSVKN 725 G + + + D RL QIF+ ++ NA+ F+ G ++ D NG + +FSV + Sbjct: 485 EIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDSGFVLVEAYLLDRNQNGSYHILFSVSD 544 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +G I + S+FN F + + G GLGL+IV+ + L GG +SISS Sbjct: 545 SGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGTLSISS 597 >gi|254452843|ref|ZP_05066280.1| sensory box histidine kinase/response regulator [Octadecabacter antarcticus 238] gi|198267249|gb|EDY91519.1| sensory box histidine kinase/response regulator [Octadecabacter antarcticus 238] Length = 734 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 135/256 (52%), Gaps = 11/256 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++ V+AE AL + ++++K F+ +S+E+R+PL ++G LL+ + +L Sbjct: 228 DISRRVKAEAALVTARDKALASEKMKTEFLTTMSHEIRTPLNGLLGSMALLRDT---ALT 284 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ Y+ S +LL+ V+++LD+ + D G + N + +++L+ ++ S + Sbjct: 285 ENQDRYISYMETSGRLLLSHVSNVLDITSYDVGKLNTNIEPMNISELMQDIVDSQSGTAF 344 Query: 664 ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF 719 N + +G K+ +D +RL + ++ NA+ F+ G ++ + D Sbjct: 345 TNKTSLVWGWNGPKMDWIFSDHERLQHVMMNLVGNAVKFTRCGKVSVMIESFGKSDGARL 404 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS- 776 S+ + G + ED+ K VF+ FV+ A+ + G GLGLSI + F+N GG + + S Sbjct: 405 RISIADTGQGMTEDLAKRVFDDFVTGNTAYDREVGGTGLGLSIAKRFVNALGGEIGVRSI 464 Query: 777 SDEGVTTINCRIPSKE 792 DEG +T +P +E Sbjct: 465 VDEG-STFWFELPVRE 479 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 8/247 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + AL EA A++ K +V +S+ELRSPL +I+G++ +L ++ L++ Sbjct: 628 RTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKNE--QLDAAPRTA 685 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S LL LV+++LDLA ++A M+L + I+ ++++ + + +R+ Sbjct: 686 IQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRL 745 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + G L +V AD +RL QI +L+NA+ F+ GS V L F V + G Sbjct: 746 QYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGS-VTLHVECTGVSMRFDVIDTGI 804 Query: 729 SIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I + +F F A RG+ G GLGL+I E I + G +++ S+ +T Sbjct: 805 GIAVQDRQRIFQPFERGAAGRLRGE-PGAGLGLAITEKLILMMNGSLNLISTQGQGSTFV 863 Query: 786 CRIPSKE 792 R+P E Sbjct: 864 VRLPLME 870 >gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-9066] gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western North America USA6153] gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia 94] gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI] gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis str. CI] Length = 587 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|317478708|ref|ZP_07937862.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905138|gb|EFV26938.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 644 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E + ++ +K++F+ ++S+E+R+PL I+GF+D+L S G+ +Q Y Sbjct: 407 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 464 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I +S +LL L+NDILD++ ++A + L+ + + + +V S+A N + Sbjct: 465 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 523 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728 + ++ D QRL Q+ +LSNA F+ +G T+ LK D +FSV + G Sbjct: 524 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 582 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP D K VF RF Q G GLGLSI + + GG + I + Sbjct: 583 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 629 >gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 484 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622 +++++K+ F+ +S+ELR+PLT+I G+++ L + G + ++++ ++ I+ + L+ Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIITKETDRLIG 296 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + MKL + L +LL E+ ++ TK + I+IK++SD K Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGIQIKLVSDEK-PIIYG 355 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+F I+ NA+ FS + + L + I +VK++G I ++ + V +RF Sbjct: 356 DANRLKQVFLNIVDNAVKFSHENGAINLSFTIEEKFVIVTVKDHGIGISDEHLRRVKDRF 415 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 N G G GLGL+I + I LHGG + + S T++ ++P E Sbjct: 416 FQVNPLNG---GTGLGLAITQQLIELHGGAMEMESELGQGTSVIVKLPLPE 463 >gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 587 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|83747379|ref|ZP_00944419.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551] gi|83725966|gb|EAP73104.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551] Length = 1000 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ERA + EA R+A E K+ F+ +S+E+R+P+ ++G +LL + L +Q Sbjct: 358 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 414 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + V SS LL++++DILD A ++AG + + + L +L + +A + HE ++ Sbjct: 415 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 474 Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722 ++V D + + V+ D RL Q+ S +LSNA+ F+ +G S + AA D I Sbjct: 475 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 534 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G I + ++F FV RR G GLGL+I L GG + + S+ Sbjct: 535 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 594 Query: 781 VTTINCRI 788 TT+ R+ Sbjct: 595 GTTLTLRL 602 >gi|330822034|ref|YP_004350896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327374029|gb|AEA65384.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 619 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LTE+ R+ D +K+ F+ VS+ELR+PLT++ G DLL G L + + V+ Sbjct: 255 RDLTEQ----RRLDRLKDDFLSTVSHELRTPLTSVKGAVDLLAGGAAGELPAPAQKLVDI 310 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKV 671 + L L++D+LD+A ++A M L L+ L++E ++A + + + + + Sbjct: 311 ARRNGERLGRLIDDVLDVAKLEADRMTLQRRACALDALVDE---ALAANLDYARRVGVTL 367 Query: 672 ISDG-KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 G G V D R LQ+ + +LSNA+ S GS V ++ A D +V+++G Sbjct: 368 TRVGAPFGCEVWVDPDRFLQVMANLLSNAIKNSPAGSAVEIRGATDGARARIAVRDHGGG 427 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 IPE +F +F R +R G GLGL I + + G V + S+ Sbjct: 428 IPEAFRARIFEKFSQADERDRRVGTGTGLGLHITQVLVERMHGTVGLVST 477 >gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. 493-89] gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. H 2687] Length = 949 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ + + +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 541 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ ++ L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 288 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 347 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K +I+I DR RL Q+ +NA+ F+ KGS + ++ A+D Sbjct: 405 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 464 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N+ +G GLGL+I + GG + + Sbjct: 465 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 519 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + RIP E Sbjct: 520 ESKEGEGSRFWFRIPRSE 537 >gi|297583439|ref|YP_003699219.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297141896|gb|ADH98653.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 466 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL DE K +F+Q++S+ELR+PL+ I G+++LL+ S S+Y I + + Sbjct: 234 ALDTEDEKKRAFIQNISHELRTPLSYIQGYSELLENQ--CREQSANSEYAVIIHREAHRM 291 Query: 621 LNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 LVN ++DL ++ +L++S +VL++++ E ++ K + + + + DG + Sbjct: 292 NRLVNQLIDLTKLEKVERTELSFSPLVLSEIIEEAARNTKLKRSDKEQSLTLNLDDGLIV 351 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + + DR LLQIF +L NA ++ G + + A G +V++NG IP++ + Sbjct: 352 NGIEDR--LLQIFINLLDNASSYTGSGGHITVSAIEKIGMASITVEDNGQGIPKEQIPFL 409 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V + ++ GVG+GLSIV+ + LH G + S + T + IP Sbjct: 410 TERFFRVEKSRTREKGGVGIGLSIVKQIVELHDGDIHFESEEGTGTAVTIDIP 462 >gi|226358140|ref|YP_002787879.1| histidine kinase, classic [Deinococcus deserti VCD115] gi|226319783|gb|ACO47777.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 423 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 10/247 (4%) Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 D + A+ A LT +++ALR A+E ++F VS++LR+PL +I GF LL+ S LN K Sbjct: 177 DVLEAQHAELTLRSDALRMANEELDAFAMSVSHDLRAPLRHITGFLGLLRRSLDAPLNEK 236 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +Y+ + ++T + L++ +LDL+ ++L + + + DLL V+ ++ + Sbjct: 237 SERYLNLVDEAATRMNTLIDAMLDLSRTSRQTLRL--TQVNVGDLLASVQTTLQPDTAQR 294 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDN-GDFIFSV 723 + V G L AD L Q+ +LSNA+ +S + T I AA++ G+++F V Sbjct: 295 RVTWTV---GPLPVVTADADLLRQVLVNLLSNALKYSQPREETHITVAAQERPGEWVFQV 351 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +NG +FN F HR G+G+GL+ V I HGG V S +E Sbjct: 352 TDNGVGFDPRYADKLFNVF-QRLHRPDAFEGIGVGLANVRRIILRHGGRVWAESQEEQGA 410 Query: 783 TINCRIP 789 T + +P Sbjct: 411 TFSFSLP 417 >gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 630 Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 12/243 (4%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL + + G N K + I+ Sbjct: 239 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 294 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVI 672 +S+ L++D+LDL+++ G ++L ++ L + + E Q + + +++ V Sbjct: 295 SSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHVP 354 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + D RL Q+F +LSNA+ F+ + + D+G FI SV+++G I Sbjct: 355 PTPCL--VLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIAS 412 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R+P Sbjct: 413 EFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 472 Query: 790 SKE 792 + Sbjct: 473 EHQ 475 >gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 953 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 20/231 (8%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ F VS+ELR+PLT+I G +LL T + + + + + + S+ L+ LVN Sbjct: 698 ERMKDEFTSVVSHELRTPLTSIHGALNLLSTGLIQPQSERGQRVIGIAADSAERLVRLVN 757 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVA 682 DIL+L +++G ++L+ + +L+ + + + I+++V S + S F A Sbjct: 758 DILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEV-SPQAIESEIEFEA 816 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFIFSVKNNGS 728 D R++Q+ + +LSN + FS +GS++ L ++ +F+VK+ G Sbjct: 817 DSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATILFTVKDQGR 876 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP D +S+F RF V + ++ G GLGL+I + + HGG + + S+ Sbjct: 877 GIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVEST 927 >gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 916 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + + GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] Length = 587 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 607 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 132/260 (50%), Gaps = 12/260 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L + +T+L +N T ++ L E E A K+ F+ +S+E+R+PL +IG T Sbjct: 273 LNDNKTILNSLNTT-----QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQ 327 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + L+++Q Y++ I+ + LLN++NDILD + +DAG + + + L +L+ Sbjct: 328 ILFET---DLDAEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVR 384 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 E+ A + + + K I+ V+D R+ QI ++ NA+ F+ G VIL Sbjct: 385 EIFDLFAIEANTKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILS 443 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ +F +K++G I + S+F +F V + + G GLGL+I E + L Sbjct: 444 IKKEEHSILFQIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLE 503 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S +T C P Sbjct: 504 GKIGVESVKGVGSTFWCSFP 523 >gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 835 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 13/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V+VT+ E + + A+ K++F+ +S+E+R+PL IIGF+++LK Sbjct: 434 TLVDVTNRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIRTPLNAIIGFSEILKNE--- 490 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L ++ + VE I+A+ LL L+ND+L+++ +DA +++ Y I L +L +V + Sbjct: 491 GLPAEALESVEAINAAGESLLALINDVLEISKIDADKLEIIYGWIRLETVLGDVGRIFEP 550 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716 ++ + + +++ L F RL QI +L NA+ F+ GS ++ A R + Sbjct: 551 QLRQKQLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVKFTVSGSVTVMAAVRKGTGNQ 610 Query: 717 GDFIFSVKNNGSSI-PEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 + +V + GS I PED K +F FV +A G GLGL+IV G Sbjct: 611 AELEIAVTDTGSGITPEDQ-KKIFEPFVQSRTGDAGGDASEGTGLGLAIVRRLAEKMNGE 669 Query: 772 VSISS 776 V + S Sbjct: 670 VLLES 674 >gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] Length = 949 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T S Sbjct: 444 LVDVSARVKMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---S 500 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L V ++ SS++LL +++DILD + +++ +++ +++ + + Sbjct: 501 LPQGVESLVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAM 560 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + D + + D RL Q+ S +L+NA+ F+ G +IL+ +G Sbjct: 561 VVKKRLTLWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQVFVKDGYLA 619 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F V++ G IP +F+ F + QR +G GLGL+I E IN+ G + + S Sbjct: 620 FRVRDTGVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 679 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 680 GMGSQFVVRIP 690 >gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 720 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 15/241 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVT+ V AERAL A A++ K++F+ ++S+E+R+PL I+GF +++ T L Sbjct: 324 NVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGVILGFAEIIGTQDLD--E 381 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S++ Y E I + L +++DILDL+ ++AG ++ S + L LL EV + Sbjct: 382 SERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPVKLKKLLQEVLTMFFDQAS 441 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715 NI + G++ + +D R+ Q+ ++ NA+ F+ KGS + + A R Sbjct: 442 RKNIYLN-YELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMKGSVKVSCRAEQVTATRK 500 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +FS+++ G + ++ + +F F R+ G GLGL++ + GG VS Sbjct: 501 K--IVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLGLALSRNLARALGGDVS 558 Query: 774 I 774 I Sbjct: 559 I 559 >gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 847 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD +K FV VS+ELR+PL++I GFT+L+ ++ KQ +Y+ I + + L L Sbjct: 613 EADRMKEEFVSTVSHELRTPLSSIYGFTELMLNREIDP--PKQRKYLTTIHSETGRLTTL 670 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681 VND LD+ +++ + +T L L E+ H+ + +S +G + Sbjct: 671 VNDFLDVQRMESSEQRYQMATFDLVQLAAEL-----IDFHDASHTTHELSFEAVGPIMID 725 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +++ Q+ + +LSNA+ +S G V ++ +G ++++ G IP++ +F++ Sbjct: 726 ADAEKIKQLLNNLLSNAIKYSPDGGNVAIRIENHDGFAEITIRDQGIGIPQEAMSKLFDK 785 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V N+ + G GLGLSI + + H G + + S+ +T R P Sbjct: 786 FYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFP 835 >gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ + + +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 660 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE L + E A++ K +F+ ++S+ELR+PLT I+G+ LLK K L Sbjct: 379 DITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDK--RLT 436 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + ++ I S LL L++DILDL+ ++AG ++L S L L ++ + + Sbjct: 437 DEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFE 496 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDN 716 + I + +L ADR+RL QI ++SNA+ F+ G + + ++ Sbjct: 497 QKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTETGQVSLKVQYTPIPDNKNQ 556 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSIS 775 G V+++G I + +F F ++ G GLGLSI ++ + + GG + + Sbjct: 557 GKMRVDVEDSGIGIAAAHLEKIFLPFQQVGNKMYYSEGTGLGLSITKTLVEMMGGQLQVK 616 Query: 776 S 776 S Sbjct: 617 S 617 >gi|154483202|ref|ZP_02025650.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC 27560] gi|149736010|gb|EDM51896.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC 27560] Length = 899 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 142/270 (52%), Gaps = 6/270 (2%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584 E + P N+ + ++ E+ EK EA L K ++++ + ++ +S++LR+PL Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T+I G L ++ N + Q YI S L+NLV ++L + ++ G + L + Sbjct: 687 TSISGNASNLLSNGDSFDNDTKKQLYMYIYDDSMWLINLVENLLAVTRIEEGRLNLRITE 746 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 +++D++ E I K E++I ++ + L D + ++Q+ I+ NA+ ++ K Sbjct: 747 DLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTPK 804 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762 S ++++ + I S+ ++G+ I +++ +F+ F S A++ RR +GLGLS+ + Sbjct: 805 NSHIVIRTEKQGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLCK 864 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 S IN HGG +++S + T +P+ E Sbjct: 865 SIINAHGGELTVSDNLPHGTVFTFTLPAGE 894 >gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 1109 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 10/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T ++E+ L E + A+ K+ F+ ++S+E+R+P+ ++G T LL+T+ L Sbjct: 843 VDITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTT---DL 899 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q QY+ I S+ L L++DILDL+ +++G M L + L + ++ S + Sbjct: 900 TPEQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFI 959 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + IR+ I+D + + D+ R QI IL NA+ F+ +G I+ + D Sbjct: 960 QQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINIVAELVEQHDRDI 1019 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 ++++ G + E + + +F FV RR G GLGL+I +L GG + + Sbjct: 1020 HVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVE 1079 Query: 776 SSD 778 S + Sbjct: 1080 SRE 1082 >gi|262198290|ref|YP_003269499.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262081637|gb|ACY17606.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 837 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++K F +VS++LR+PLT I+G L K ++ +L + Q Q +E S+ LL Sbjct: 144 RELEQLKTEFFANVSHDLRTPLTLIMG--PLQKLAQAENLLAGQRQDIEVALRSANTLLG 201 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +NDILD+A +DAG + +Y++ L+ L+ E E I + + ++ L + + Sbjct: 202 RMNDILDVARLDAGELSPSYASCELDALVREAASHFDVMAGEREIDLSIEAEETLVAEL- 260 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D + ++ +++NA + + +G + R +G+ + V ++G +P D +F R Sbjct: 261 DPSSIQRVLLNLMANAFEHTPRGGRIRCSLERISGERVRIEVADSGPGVPPDKRSQIFQR 320 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F +G+RR GLGL+I + F+ LH G + + + EG +P + Sbjct: 321 FQRGEAQGERRFDSSSGLGLAICKDFVLLHRGRIVVLEAPEGGALFRIELPRR 373 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/252 (20%), Positives = 121/252 (48%), Gaps = 15/252 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + D++ + R E+ E +A ++K+ F+ V++ELRSPL ++ L+ +L +++ Sbjct: 571 LQDALESTRVAREQAE---QASQLKSDFLGMVTHELRSPLASLA-----LQLERLDMMDA 622 Query: 605 KQSQYV----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + V + +++S L +L+ +L+ V G +++ L+ L+ ++ + Sbjct: 623 NPAPAVHTLRQRMNSSIGRLSSLIESLLEYVRVQRGHLEVRPERFDLHLLVTDLVDDLKI 682 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + +G+L ++D + + ++ NA+ F+ +GS + + D I Sbjct: 683 QAEDKRLELSLRCEGRLPQLLSDMRLVRLAVLNLVGNAIKFTDEGSIAVALSYADERHLI 742 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V + G IP++ +F F + + GVGLGL++V + G +++ S Sbjct: 743 -AVSDTGPGIPDEAQHRIFQPFEQMVTTRKKHLPGVGLGLALVREMVTSVNGTIALESKV 801 Query: 779 EGVTTINCRIPS 790 +T +P Sbjct: 802 GVGSTFRIALPP 813 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ER++ + L++ D++K+ F+ + S+ELR+PL I+G + L G L+ K Q Sbjct: 855 VEQERSVVRR---LKQLDKLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSHKTKQ 911 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I +S L LV+D+LD A + M LN + ++ L++ V + I Sbjct: 912 NLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAKPIE 971 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +L AD RLLQI ++ NA+ F+ +GS V + A + SV + G Sbjct: 972 LVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDEGS-VTISAEVQGEEICISVADTGI 1030 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +PE+ + +F+ F + A G GLGLS+ + + LHGG + + S+ Sbjct: 1031 GVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRST 1081 >gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 579 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASST 618 EA ++AD++++ + VS+ELR+P+ I GF LK + + + Q ++ I ++ Sbjct: 345 EAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINEIEQNAE 404 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L LV D+LDL+ +++G +++ +ND+L+E+ + N+ ++V SD L Sbjct: 405 RLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQV-SD-TLP 462 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +R+ Q+ ++ NA FS GS +++ A R V + G IP + + Sbjct: 463 LIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENGIRVGVLDEGEGIPPEYHDKI 522 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F RF + A ++G GLGL+I + + HGG + + SS Sbjct: 523 FERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESS 563 >gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 917 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ + +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLSTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + ++ Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731 S V D RL QI + ++SNA+ F+ +G T++++A D+ SV++ G + Sbjct: 392 PTSLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDDEHEDHAQLRISVQDTGIGLS 450 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498 >gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 502 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ ++ L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 249 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 307 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 308 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 365 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K +I+I DR RL Q+ +NA+ F+ KGS + ++ A+D Sbjct: 366 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 425 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N+ +G GLGL+I + GG + + Sbjct: 426 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 480 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + RIP E Sbjct: 481 ESKEGEGSRFWFRIPRSE 498 >gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] Length = 949 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ + + +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|157374892|ref|YP_001473492.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3] gi|157317266|gb|ABV36364.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3] Length = 583 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 139/262 (53%), Gaps = 11/262 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKN-EALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592 + +L F ++ S +AL + E R+A+ FV +++ELR+PL+ ++G D Sbjct: 182 KQLLLFCDMLHSAYQRQALLNRTLEEKRRAEYSERTARDFVAMINHELRTPLSGLLGSAD 241 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L++ +++ + Q Q ++ + S +L ++ND+LD++ ++AG++K+ + L + Sbjct: 242 LMRDTQM---TAHQQQLLKTMHQSGELLEVIINDLLDISKMNAGMLKIIDTKFSPEQLCS 298 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ TK E + ++ D + + + D R+ Q+F ++ NA+ F+ +G + +K Sbjct: 299 MIQNIFTTKTAELGLAFELTFDEHIPARLLGDPDRIKQLFVNLIGNAIKFTDQGK-ISVK 357 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHG 769 F F++ ++G IP+D +F FV +NA G GLGL+I + ++ Sbjct: 358 VDWVQEMFHFTISDSGCGIPKDKLAHIFEPFVQVNNASNRPHEGTGLGLAICKLLVDEMK 417 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G +S+ SS++ T + R+P K Sbjct: 418 GEISLESSEDEGTQFSVRLPLK 439 >gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1085 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 20/258 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L + E A + K F+ +S+E+R+P+ +IG D+L SKL + Q Sbjct: 394 QAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLRSKL---DMSQMSI 450 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + S+ LL+++NDILD + ++AG M+++ T+ L + +V ++AT+ E N+ + Sbjct: 451 ANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVMDNLATEAVEKNVSL 510 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-NGDFI 720 + +S S D R+ QI I+ N + FS S + A+D N Sbjct: 511 TLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFSGGQSHRGEVQVWITADIAKDGNAKIS 570 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +++NG I +D +S+F F+ + RR G GLGL+I + +L GG ++ ++S+ Sbjct: 571 IEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNIASLMGGTIT-ANSE 629 Query: 779 EGVTT-----INCRIPSK 791 EG+ + ++ R+P + Sbjct: 630 EGIGSTFTVNLHLRVPEE 647 >gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 575 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620 L++ ++++ FV +VS+EL++PLT+I GF++ LL +K + + Q+++ I +T + Sbjct: 346 LKRLEKMRKDFVANVSHELKTPLTSIRGFSETLLDGAK--EVPELRDQFLDIIQKEATRM 403 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV D+L+L+ ++ ++ ++ LN L++EV ++ K + +I+++ +G + Sbjct: 404 QMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTV-VL 462 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD R+ Q+ +++NA+++S +GS V + + VK+NG I E +F Sbjct: 463 QADLNRMKQVIMNLVANAINYSPEGSRVEIAVEAKADSYKLRVKDNGIGIAEKEVSRIFE 522 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGL+IV+ I+LH + + S + TT P Sbjct: 523 RFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFP 573 >gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 765 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 132/255 (51%), Gaps = 16/255 (6%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLG 600 E+ + E+ + LR A+ K+ F+ ++S+ELR+PLT IIG + L + S Sbjct: 366 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESTTL 425 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ KQ +Y++ I S LL+++N+IL+ + + +G L L + V Q ++ Sbjct: 426 PLD-KQQKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLTKVAKNVIQRVSD 484 Query: 661 KMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + N+ + + + + SF AD +R+ QI +L+NA+ F+ + +V L+ R+N Sbjct: 485 EAEHRRINLELDLQINQQQDSFYADPERVQQILYHLLNNALKFTPENGSVTLRIWRENNH 544 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I E+ +F F + N+ R G GLGL++ + + LHGG + + S Sbjct: 545 VSLEVEDTGIGIQEEKIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVES 604 Query: 777 SDEGVTTINCRIPSK 791 +T R+P++ Sbjct: 605 IINQGSTFIIRLPNQ 619 >gi|115376143|ref|ZP_01463387.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115366866|gb|EAU65857.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 774 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 8/241 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609 A+RA E EA R +K+ F+ +S+ELR+PLT+I+G+T LL+ L ++ Sbjct: 393 AQRAQQEAQEANR----LKDEFLATLSHELRTPLTSILGWTQMLLRRDDLDEAGRRRG-- 446 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I ++ + LV D+LD++ + AG + L+ + L ++++ +S+ + + Sbjct: 447 LETIERNARVQRQLVEDLLDVSRIAAGKLTLDLREVKLREVVDAALESVRPTAEARGVVL 506 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + S +AD RL Q+ +L+NA+ F+ +G V L+A R+ +V + G Sbjct: 507 QAAPGEVSESVLADSTRLQQVLWNLLTNALKFTERGGCVRLEARREEAFVALTVSDTGKG 566 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 I VF RF G+GLGL+IV + + LHGG V + S G T R+ Sbjct: 567 IEAGFLPHVFERFRQGNTGRGHGGLGLGLAIVRTMVELHGGTVDVHSDGPGTGATFTVRL 626 Query: 789 P 789 P Sbjct: 627 P 627 >gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 828 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471 TI + ++ +L+ ++N +++ + +G+ G+ N ++ Sbjct: 156 TIHLGQHYYALEELKVRFNAILQT-------VEQGIVFIDDSGKNSWINEPAAAILGISG 208 Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531 + P + SR N+ + + I TS D K+ Q VL Sbjct: 209 GNVPPAELSAAMQQLRSRADNKEEIFRRGMEIFTSADKRVKNWQWIFSTPETYVLNVCCT 268 Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKN----EALRKADE---IKNSFVQHVSYELR 581 P + + TF ++T + L E N E R ADE K+ F+ ++S+E+R Sbjct: 269 PTISEHISGMLWTFDDITQQYLYDEHLKELNVQLEEKSRIADEQNKAKSEFLANMSHEIR 328 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +P+ +IG T LL+ ++L + Q +VE I S+ LL ++N+ILD + +++G ++L Sbjct: 329 TPMNGVIGMTSLLRNTRL---DEDQFDFVESIRISADALLEIINEILDFSKIESGKLELE 385 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700 VL+ ++ E ++ K E ++ + I D + + D RL QI ++ NA+ Sbjct: 386 EHPFVLSKIVEETYDLLSFKAQEKDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIK 445 Query: 701 FSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 F+ +G S +L+ + FSV+++G IP+D +FN F V ++ + G Sbjct: 446 FTDEGEILTSIKLLEKKGSTYELEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGT 505 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGL I I G + + S Sbjct: 506 GLGLVISARLIQKMNGRIWVES 527 >gi|116328265|ref|YP_797985.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121009|gb|ABJ79052.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 839 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610 E+ + E + L D++K+ F +VS+ELR+PLT IIG T LLK K+ ++ Q ++ Sbjct: 192 EKEIQEIYKRLFDMDQLKSQFFANVSHELRTPLTLIIGPTRTLLKDQKI---SAAQRTFL 248 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + +S LL VND+LDL+ ++AG M L YS L+D++ ++ + E NI Sbjct: 249 ETMERNSYTLLKHVNDLLDLSKLEAGKMTLRYSNANLSDMIQDIAAHFNSVADERNIDF- 307 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V+ K D ++ +I ++SNA F + ++ V +NG + Sbjct: 308 VLDLPKNFPIQIDVPKMERIILNLISNAFKFVPDSGKIHCTLKMESATAYIYVADNGPGV 367 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 P + +F +F G R G GLGL+I F+NLH G + + S G + Sbjct: 368 PVHLRDQIFEKF-RQGEEGDSRSFGGTGLGLAIAREFVNLHLGSIGVFDSFLGGALFKVQ 426 Query: 788 IP 789 IP Sbjct: 427 IP 428 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/257 (21%), Positives = 119/257 (46%), Gaps = 14/257 (5%) Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 ++LL + +Y I P + + N L + EAL + SF VS Sbjct: 563 IKLLQEGAQDYLIKPFTPEELSIKVHNFA-------VLKKTIEALENVNRDMESFSYSVS 615 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 ++LR+P+ I GF ++ ++S+ + ++ + + + NL+ D+L+ + Sbjct: 616 HDLRAPILGIEGFLQIVLEDFSEKMDSEALRLLKTVQKNVIYMNNLIQDLLNFHKISK-- 673 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 + LN + +N ++ EV ++ + + ++ +L + +A+ L Q++ ++SN Sbjct: 674 IDLNIRIVDMNRMVEEVIAAVLQNYPKKSYSFQL---NELPNALANGSALKQVWMNLISN 730 Query: 698 AMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 A+ +SS ++K + +G ++ V++NG + +F F + + G G Sbjct: 731 AVKYSSTKEHPMIKIGFEEVDGSNVYFVEDNGVGFNKIYSNRLFKVFQRLHTQEEFEGTG 790 Query: 756 LGLSIVESFINLHGGHV 772 +GL+IV + HGG V Sbjct: 791 VGLAIVARIVQRHGGQV 807 >gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 977 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 12/219 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ ++S+E+R+P+ ++G T+LL LG+L N KQ Q+ E I S LL ++NDI Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELL----LGTLLNGKQRQFAETIRNSGEALLAIINDI 349 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686 LD + ++AG ++L +++LL + + A+ H+ + + V I V D R Sbjct: 350 LDFSKIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPAR 409 Query: 687 LLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 L Q+ + SNA+ F+ +G VI ++ +DN F V++ G I + + +F F Sbjct: 410 LRQVVLNLASNAVKFTDQGEIVISADVAESGQDNILIRFLVRDTGIGISPESLEKIFEGF 469 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 RR G GLGL+IV L GG + S+ + Sbjct: 470 AQADGSMTRRYGGTGLGLTIVRQLAGLMGGTTRVESTPD 508 >gi|323484285|ref|ZP_08089653.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum WAL-14163] gi|323402437|gb|EGA94767.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum WAL-14163] Length = 661 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A AL KNE LR ++ ++ +S++LR+PLT+I G +L +S+ K+ + Sbjct: 421 AAAALLAKNEQLR------SNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLY 474 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I S L+NLV ++L + ++ G MKL +T +L++++ E + + E+ I+IK Sbjct: 475 EDIYDDSLWLINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIK 534 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D L AD + ++Q+ ++ NA+ ++ GS V+++ R+ + +V +NG I Sbjct: 535 QEEDFLL--VKADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI 592 Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774 ++ + +F+ F + A + RR +GLGL++ +S I HGG +S+ Sbjct: 593 SDESKEHIFDMFYTAATKIADSRRSLGLGLALCKSIITAHGGTISV 638 >gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 585 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 8/234 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GF + L G++ +++ ++ I S Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDERTLEHFLSIIWKESER 408 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LV D+LDL+ ++ +L+ T+ L LL+E+ K E I + + K Sbjct: 409 LQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFR-MHAAKSIY 467 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL QIF +++NA+ ++ KG V + A + + VK+ G I E +F Sbjct: 468 MEGDANRLKQIFINLITNALTYTPKGGQVEVIAEEQEEETLVHVKDTGIGIEEAEIPRIF 527 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF V A G GLGL+IV+ + H GH+++ S+ TT P + Sbjct: 528 ERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPKQ 581 >gi|325981723|ref|YP_004294125.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] gi|325531242|gb|ADZ25963.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] Length = 1222 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 11/256 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 A+ + V V ++ R+ ++ E+ N+ L + D +K+ F +VS+ELR+PLT I+ Sbjct: 163 QAEILRRTVEVKEANRSLKSALEELSVANQRLTELDHLKSEFFANVSHELRTPLTLILAP 222 Query: 591 TD--LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 + L + GS +K+ + +E + ++ +L V D+LD+A +A M++ ++ + Sbjct: 223 LEDRLRQLPNKGSKPTKERREIELMLRNARLLYRHVTDLLDVAKSEANCMEVYSASFDIA 282 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L+ H+ +I + +IS L +D ++L ++ +LSNA F+ + Sbjct: 283 QLIRMTASYFEQAAHDRDITLNIISPRTL-VIESDSEKLQRVLLNLLSNAFKFTPDNGCI 341 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR--GVGLGLSIVESF 764 L D V++ G IP M + VF RF V NA R G GLGL+IV+ F Sbjct: 342 TLSLTSTQNDVRIDVQDTGPGIPMAMRERVFERFTRVENATAANRNYGGTGLGLAIVKDF 401 Query: 765 INLHGGHVSISSSDEG 780 ++L GG V++ S G Sbjct: 402 VDLLGGKVTLEDSPGG 417 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ + E+ L+ ++ SFV VS++L++PL + G++ LL+ L+ + ++ Sbjct: 979 EKRIAERTAELQALNQSLESFVYSVSHDLKAPLRGVEGYSRLLEEDYFDRLDDEGRLFIS 1038 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 I T + L+ND+L + ++ KL + DL + Q++A E + I+ Sbjct: 1039 NIRTGVTHMNELINDLLAYSRMER--CKLQSHEL---DLTLLIHQALAEYNEEITLHAIE 1093 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGS 728 +++D DR+ L+ +L NA+ FS + + A R+ I +++NG Sbjct: 1094 IVADFPSFKVYGDREGLVLTLRNLLGNAIKFSQGTPHPRIEFGACRNKDHVILWIRDNGI 1153 Query: 729 SIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +F F HR + G G+GL++V+ + GG V SS T + Sbjct: 1154 GFDMKYNSRIFEIF-ERLHRLEDYPGTGIGLALVKKAMQRMGGRVWAQSSPGEGATFSIE 1212 Query: 788 IPS 790 +P+ Sbjct: 1213 LPA 1215 >gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 546 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTI 619 A + +E +N+F+ +S+ELR+P++ I GF + + G +Q + ++ I + Sbjct: 308 AQKAEEERQNTFISVISHELRTPVSIIKGFAETMLRPD-GQFTVEQYREALQVIGEEADR 366 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678 L + D+LD++ + AG ++L YS + L L+ EV + A ++ + I+V D + Sbjct: 367 LARQIQDLLDVSRIAAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDD--MP 424 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD +RL Q+F+ ++ NA+ +S G T+ + A + I V + G IP + + Sbjct: 425 PVYADYERLRQVFTNLIENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLI 484 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V N R R G GLGL I + + HGG + + S Sbjct: 485 FERFYRVDNRLRRDRPGSGLGLYITRAIVEAHGGRIWVES 524 >gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia] Length = 917 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 + LL ++N+ILD + ++AG + L+ L DL+ + +A H + + V D Sbjct: 331 SSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI---FSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A ++GD + V++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVTRAMLEEEHGDSVQLRICVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + I GG + + S+ EG ++ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWVSL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 863 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 21/273 (7%) Query: 536 AQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 A+++L V + ++AE AL A A++ K+ F+ ++S+E+R+PL ++G Sbjct: 444 AESILQLAGVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGM 503 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL T+ + N +Q +Y+ S+ L L++DILD++ ++AG M + + + Sbjct: 504 LQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNT 560 Query: 651 LNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + +K+ A + + ++ + D L + D RL QI ++ NA+ F+ KG Sbjct: 561 WDSIKELFALEARRKGLVLEFGCVKDLPL-LLIGDEVRLRQILFNLVGNAVKFTEKGKIR 619 Query: 709 I-------LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 I L +++ + + +V + G IPE+ K +F FV RR G GLGL Sbjct: 620 IDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGL 679 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SIV +NL GG ++I S+ TT+ +P K Sbjct: 680 SIVRRLVNLLGGDIAIDSTLGEGTTVYLSLPLK 712 >gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 454 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 7/235 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 +R+ + I+ FV +VS+E+R+PLT+I GF + L G +N ++ ++ I + + Sbjct: 212 IRQLERIRKDFVANVSHEIRTPLTSIRGFAEALHD---GGINDPKTAREFSGIILSHAER 268 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N+V+D+L L+ ++ G + Y ++ L+ + ++ A + IR V + + Sbjct: 269 LGNIVSDLLHLSELETGKAVMRYGSVSLSRQIAHIRDVYADHARKKGIRFTVQLPEETLT 328 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D ++ + ++ NA+ ++ +G V ++ +F V+++G IP +F Sbjct: 329 YETDEGKMDLVLGNLVDNALKYTPEGGEVFFGGWKEGDAIVFEVRDSGVGIPRTEVDRIF 388 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A + G GLGLSIV + + G V ++SS +T R+PS+E Sbjct: 389 ERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFFVRVPSRE 443 >gi|116330989|ref|YP_800707.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124678|gb|ABJ75949.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 839 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610 E+ + E + L D++K+ F +VS+ELR+PLT IIG T LLK K+ ++ Q ++ Sbjct: 192 EKEIQEIYKRLFDMDQLKSQFFANVSHELRTPLTLIIGPTRTLLKDQKI---SATQRTFL 248 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + +S LL VND+LDL+ ++AG M L YS L+D++ ++ + E NI Sbjct: 249 ETMERNSYTLLKHVNDLLDLSKLEAGKMTLRYSNANLSDMIQDIAAHFNSVADERNIDF- 307 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V+ K D ++ +I ++SNA F + ++ V +NG + Sbjct: 308 VLDLPKNFPIQIDVPKMERIILNLISNAFKFVPDSGKIHCTLKMESATAYIYVADNGPGV 367 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 P + +F +F G R G GLGL+I F+NLH G + + S G + Sbjct: 368 PVHLRDQIFEKF-RQGEEGDSRSFGGTGLGLAIAREFVNLHLGSIGVFDSFLGGALFKVQ 426 Query: 788 IP 789 IP Sbjct: 427 IP 428 Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/257 (21%), Positives = 119/257 (46%), Gaps = 14/257 (5%) Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 ++LL + +Y I P + + N L + EAL + SF VS Sbjct: 563 IKLLQEGAQDYLIKPFTPEELSIKVHNFA-------VLKKTIEALENVNRDMESFSYSVS 615 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 ++LR+P+ I GF ++ ++S+ + ++ + + + NL+ D+L+ + Sbjct: 616 HDLRAPILGIEGFLQIVLEDFSEKMDSEALRLLKTVQKNVIYMNNLIQDLLNFHKISK-- 673 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 + LN + +N ++ EV ++ + + ++ +L + +A+ L Q++ ++SN Sbjct: 674 IDLNIRIVDMNRMVEEVIAAVLQNYPKKSYSFQL---NELPNALANGSALKQVWMNLISN 730 Query: 698 AMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 A+ +SS ++K + +G ++ V++NG + +F F + + G G Sbjct: 731 AVKYSSTKEHPMIKIGFEEVDGSNVYFVEDNGVGFNKIYSNRLFKVFQRLHTQEEFEGTG 790 Query: 756 LGLSIVESFINLHGGHV 772 +GL+IV + HGG V Sbjct: 791 VGLAIVARIVQRHGGQV 807 >gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 547 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 24/249 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E L A+ K+ F+ ++S+E+R+PL IIG +LL ++L ++ Q +Y Sbjct: 126 RTEAELARARHEAESANRAKSEFLANMSHEIRTPLNAIIGIGELLAKTRL---DATQREY 182 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I S +L+L+ DILD + ++AG ++L+ + E + K E +RI Sbjct: 183 VHIIETSGNAMLSLIEDILDYSKIEAGRLELDAVRFAPAVCIREAVGLVQLKAREKGLRI 242 Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG-- 717 V D G G F+ D R QI +L NA+ F+ +G S V A +D Sbjct: 243 DVAVDPGIPGYFLGDSHRFRQIAINLLGNAVKFTEQGRIGVSLNGHSIVPEDAGQDRTMS 302 Query: 718 -------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + +V++ G IP D +F +F RR G GLGL+I L Sbjct: 303 QSDEAWYQLVLTVEDTGIGIPPDRQSHIFAKFSQVDASTTRRYGGTGLGLAICRQLARLL 362 Query: 769 GGHVSISSS 777 GG + + S+ Sbjct: 363 GGDIEVESA 371 >gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 933 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 10/242 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++D +AE L E A++ K +F+ ++S+ELR+PL I+GFT LL +L Sbjct: 428 LDISDRKQAEEELVRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLLNYGD--NL 485 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + I S LL+L+NDILDL+ ++AG + ++ L +L+E+K + K Sbjct: 486 TEHQHNNLNIIQRSGEHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKA 545 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715 + N+ + + L ++ DR +L QI ++ NA+ F+ +G VI + ++ Sbjct: 546 SQKNLYLDCVYSPDLPRYIRGDRLKLRQIMINLIGNAIKFTEQGRVVITADHKFISSSPP 605 Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +V ++G + PE++ + F + A + G GLGL+I + ++ L G + + Sbjct: 606 ICCLQIAVTDSGVGMTPEEIAQLYEPFFQAQAGIDSQEGTGLGLTICQKYLQLMGAEIEV 665 Query: 775 SS 776 S Sbjct: 666 IS 667 >gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EDL933] gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. Sakai] gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EC4024] gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. EC1212] gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. G5101] gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. USDA 5905] gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. LSU-61] gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1125] gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1044] Length = 949 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ + + +++N + + Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTVRIP 689 >gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] Length = 785 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 143/270 (52%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL +++ ++ Y + I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSDIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I T +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + R + D VK+ G I + +F RFV Q G GLGLSI Sbjct: 555 YEGE-IRFGFGRMDKDIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 786 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AER L +K A A++ K+ F+ ++S+ELR+PL I+GF +L+++ GSL S + + Y Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S T LL++++DIL ++ ++A +KL I L L +A + ++ I Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSI 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + G L +AD + L QI I+ NA+ F+ + + L+ NG + + G Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRIALRGRSCNGFVHLFIGDTGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785 IP+ + F + +N R +G GLGL+I S LHGG + I S+EG+ T + Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743 Query: 786 CRIP 789 R+P Sbjct: 744 VRLP 747 >gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 940 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ + E L E E A K F+ ++S+E+R+P+ II LL+ ++L Sbjct: 540 DISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTEL---T 596 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q +Y+ + SS LL L++DILD++ ++AG ++L Y+ + + EV S ++ Sbjct: 597 SEQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRIT 656 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI 720 + + I +SDG + D R QI +L NA+ F+ +G S V +AR + I Sbjct: 657 QKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLI 716 Query: 721 FS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + + G + ++ + VF+ F R+ G GLGLSI + L GG + +S Sbjct: 717 MRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAAS 776 Query: 777 SDEGVTTINCRIP 789 +T +P Sbjct: 777 RPGSGSTFFVELP 789 >gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] Length = 924 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K EA + A+ +K+ F+ +S+ELR+PL +IGFT L KT LN Q Y++ I S Sbjct: 280 KKEA-QDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTP----LNKHQKDYLDTIMLS 334 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 + L+ +++DILD + ++AG M+L L D +NEV +A H+ + + + I+ Sbjct: 335 ANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYINQQ 394 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIP 731 D R Q+ +LSNA+ F+ KGS + + R + + SV + G IP Sbjct: 395 VPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGVGIP 454 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 D S+F F R+ G GLGL I + + G ++++S+ Sbjct: 455 MDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSA 502 >gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 914 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 130/247 (52%), Gaps = 9/247 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + +R L E +D +K++F+ ++S+E+R+PL I+GF+ ++ S + Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TNE 561 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y E + +++ LL L+N+ILDL+ +++GI++ + + L+ L E+ + + Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + I SD + D+ R+ Q+ S ++ NA F++ G I G ++ F Sbjct: 622 KGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTAGH--ISYGYHQEGKYVAFH 678 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G I D VF RFV + Q G GLGLSI ++ I GG++S++S T Sbjct: 679 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 736 Query: 783 TINCRIP 789 T +P Sbjct: 737 TFTFVLP 743 >gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] Length = 715 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 5/247 (2%) Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 D++ A R L ++ L + K+ FV ++S+ELR+PL ++ LL ++ +L+ + Sbjct: 27 DALAASRQQLADQAGDLARESRYKSEFVANMSHELRTPLNALLIMARLLSENRPHNLSPE 86 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Q+ E I +S LL L+NDILDL+ ++AG + ++ D+ + ++ A + E+ Sbjct: 87 QIQWAETIESSGRDLLGLINDILDLSRIEAGKVDVDPEVTQPKDVAARMMRAFAVQASES 146 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724 +++ + D +L QI LSNA+ F+ KGS V L AR + + FSVK Sbjct: 147 GLKLVSEVADDVPEITTDVGKLEQILRNFLSNALKFTQKGS-VTLSVARSGAETVTFSVK 205 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +VF F RR G GLGLSI + GG V + S+ + Sbjct: 206 DTGIGIAAEQHDAVFEAFRQADGSISRRFGGTGLGLSISRDLAGILGGDVMLESTPGKGS 265 Query: 783 TINCRIP 789 T +P Sbjct: 266 TFILTLP 272 >gi|254254025|ref|ZP_04947342.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gi|124898670|gb|EAY70513.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] Length = 477 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 13/246 (5%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+L +A +ADE +K+ + VS+ELR+PL I G+ ++L++ L Q Sbjct: 88 RSLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGL---AQQA 144 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I S+ L +V D+LD +++ G ++L + L ++ E + +A N I + Sbjct: 145 VDAIDRSARSLSRMVGDLLDASSLATGRLQLERVPVDLVRIVRETARELAATAQANGIVL 204 Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +D + + V AD +RL Q+ S +LSNA+ ++ G V + R SV + G Sbjct: 205 A--TDCAMPTCVIPADGERLRQVLSNLLSNAIKYTPPGGRVDVSLTRAGEHVRLSVADTG 262 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTI 784 I + +F+ F A +RG+GLGLSIV + +LHGG VS +S G TT+ Sbjct: 263 QGIAPEHLPHLFDTFNRPHGAPTSPKRGLGLGLSIVRNIAHLHGGDVSATSDGAGRSTTV 322 Query: 785 NCRIPS 790 +P+ Sbjct: 323 TVTLPA 328 >gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41] Length = 916 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT-INC 786 +++F F N+ Q G GLGL I + + GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] Length = 571 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L++ ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 905 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 13/267 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDL 593 Q L T R E+ E + A KA+ K F+ ++S+ELR+PL I+GF+ L Sbjct: 397 QAKLKLAQQTLEKRVEQRTEELSAAKEKAEIANHAKTEFLANMSHELRTPLNAILGFSQL 456 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L++ G+L +V I+ S LL L+ND+L+L+ ++AG +N S++ L +LL Sbjct: 457 LQSE--GNLTEAHHSHVGIINRSGEHLLTLINDVLELSKIEAGQTVVNVSSLDLIELLET 514 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 ++ + K + +I + + + F+ D +L QI +L NA+ F+ +G + Sbjct: 515 LQSMMQLKANAKSIHLSTTYNPDIPHFIETDTIKLRQILINLLGNAIKFTKQGQVNLNVR 574 Query: 710 -LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFI 765 L+ G F+V + G I +++F FV Q + G GLGL I F Sbjct: 575 TLETPNTEGLICLQFTVSDTGPGIDSSGLEAIFTPFVQTRTGQQSQEGTGLGLPISRKFA 634 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 L GG +++ S+ + +C I +K+ Sbjct: 635 RLLGGDITVDSTPNEGSAFHCTIQAKQ 661 >gi|71909424|ref|YP_287011.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849045|gb|AAZ48541.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 963 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 142/292 (48%), Gaps = 21/292 (7%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EA 561 LQG + D +S+ P+ + + F+ N+T+ + E LT KN E Sbjct: 117 LQGKKSIFVD----FSLTPIRDDAGRVAFLLPEGRNITEKIAIEAELTRKNGELQLALEK 172 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620 LR+ D K F +VS+ELR+PL I+G D +L+ S+ L ++ + I ++ L Sbjct: 173 LREIDGFKTKFFANVSHELRTPLALILGPVDQMLRESE--QLGERERFRLTTIKRNAQSL 230 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 VND+LDLA +DA M L Y + + LL EV A E I + + +L + Sbjct: 231 HQQVNDLLDLARIDAQQMPLAYVCVNVVALLREVAAGFAAAAEERAISLIIEGADELQAD 290 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739 V DR + ++ + +LSNA F+ G + R N F+ SV++NG +P M + +F Sbjct: 291 V-DRAKFARVLANLLSNAFKFTPAGGRICCSITRVANDRFLLSVQDNGPGVPPPMKQQIF 349 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RF G GLGL+IV+ F+ LH G V + + G +P + Sbjct: 350 DRFAQGQGGLSGIGSGLGLNIVKEFVELHFGTVVVLDAPGGGAIFQVEMPKR 401 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 32/361 (8%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 G+A+ +GRI +NPA + + E + G +I+ R + LF I Sbjct: 615 GIALADREGRILKANPALQQMLGYSEAEIV-GVSFIDISDESQRAMTLRNVHGLFDGSID 673 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 + +++ + L +V S+IP + + + +V+ AE AL L Sbjct: 674 HYHVQKRYERRDGSFLWANV-SASLIPAVDVEGPRLAVIVEDVSSRKEAESALAATQTEL 732 Query: 563 RKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 + V +++E+ PL+ I+ + + L L + Y E ++A Sbjct: 733 ARVSRFTAMGELVASIAHEVNQPLSAIVTNSQ----AALRWLARETPDYQEVVAA----- 783 Query: 621 LNLVNDILDLA-TVDAGIMK------LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 LN VN LA V A I + +V+ +L + Q + T + E ++ + + Sbjct: 784 LNRVNRDASLAGEVIARIRNFLSMGGMQRERLVVRPILENLLQMLQTMLQEADVEVDLRI 843 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDF----SSKGSTVILKAARDN-GDFIFSVKNNGS 728 L +AD +L Q+ ++ NA+D + + + + D G +FSV + G Sbjct: 844 APGLPDLLADPVQLQQVLLNLVVNAVDAMREEKERARRLSISVSADTAGSVLFSVSDTGP 903 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP D +F+ S + RG+G+GL+I S + HGG + + G I Sbjct: 904 GIPPDKAAKIFDALFST----KSRGLGMGLAISRSIVENHGGRLRLVPEAAGGAHFVFNI 959 Query: 789 P 789 P Sbjct: 960 P 960 >gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1283 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 18/252 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V+ A++ L + E +A +K+ F+ +S+E+R+P+ +IG + LL Sbjct: 1019 DVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE---DPR 1075 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q + ++ + S+ L+ L+NDILD +D+G ++L + L +L+ + S + + + Sbjct: 1076 ADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVHSHSFQAN 1135 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------AR 714 E ++R+ + D L + D RL QI + +LSNA+ F+ KG I + R Sbjct: 1136 EKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDKGEVTIKLSHEILEKGICR 1195 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 N F + G +PED +S+F F + R+ G GLGL+IV+ +NL+GG + Sbjct: 1196 VN----FECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLYGGDI 1251 Query: 773 SISSSDEGVTTI 784 ++S+ G +T Sbjct: 1252 EVNSNISGGSTF 1263 >gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 624 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +++KN F+ + S+E+R+PLT+IIGFT+LL + + +Y++ I +S LL Sbjct: 232 LEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYQAERERHQEYLQIIQSSGKHLL 291 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L+NDILDL+ ++A +++ + + + L V + K + +++++ + + + Sbjct: 292 SLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLALVKEKAGDKGLKLQIQISEDVSTLL 351 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ +L NA+ F++ GS V L+ + F+V + G I E+ +F Sbjct: 352 VDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVIKDSWLRFTVWDTGVGISEEDLSLLFRP 410 Query: 742 FVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + N + G GLGL + + +HGG + + S Sbjct: 411 YTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGGSIEVRS 450 >gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] Length = 571 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L++ ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + LL ++ + K E I ++V + K S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 523 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G Sbjct: 238 EQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGP--HAVPV 295 Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y +Y I S LLNL+N+ILDL+ ++AG +LN L + + + + Sbjct: 296 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRASNR 355 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723 I I + + D + QI +LSNA+ F+ +G + LKA G ++ V Sbjct: 356 GITIHEAFEEDMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLI-V 414 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K+ GS IP+D V F SN+ + +G GLGL I +S I++HGG ++ S Sbjct: 415 KDTGSGIPDDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 469 >gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] Length = 587 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + ++ S Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|332663617|ref|YP_004446405.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332332431|gb|AEE49532.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 572 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 18/250 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E ++++ K F+ H+S+E+R+PL I GFTDLL + SL+ KQ +++ I Sbjct: 44 LIAQKERAEQSEKFKQRFLAHMSHEIRTPLHGIAGFTDLLLET---SLSEKQRRWLSSIY 100 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S+ L +VN +L+L+ ++AG +KL + +V++S++ + I + + + Sbjct: 101 HSTERLDEVVNAVLELSKLEAGELKLRKIPFSPAKVAADVQESLSLRAQNKGINLLLDVH 160 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA----RDNGD-------FIF 721 G+ D RL QI + NA+ F+ KGS T+ + A R + D I Sbjct: 161 KNVPGALRGDPTRLYQILMNLTGNAVKFTEKGSVTIKMDCAESIERTSDDPATNWVTLIL 220 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 + + G IP + +VF+ F R G GLGL++ + + LHGG + + S+ Sbjct: 221 RIIDTGIGIPAEKITAVFDSFEQAGEDMVARYGGTGLGLTVTQELVQLHGGDIQVESALG 280 Query: 780 GVTTINCRIP 789 TT ++P Sbjct: 281 VGTTFTVKLP 290 >gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 743 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E+ L E A+ K++F+ ++S+E+R+P+ ++G +LL ++L N Sbjct: 200 DITHIIEREQELEEARNKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLGETEL---N 256 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YVE I +S LL ++ND+LD + ++A +KL L L+E+ + Sbjct: 257 EEQQLYVETIRSSGEALLTIINDVLDYSKIEAERLKLYPEVFDLERCLHEIMVLLQPSAK 316 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720 + +++ V D L + F+AD R+ QI + +L NA+ F+ G + ++ RD + Sbjct: 317 DKGVKLLVDYDLFLPTRFIADPGRMRQILTNLLGNAVKFTHTGHVLARVVGFERDAEHYE 376 Query: 721 F--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G I D VF F RR G GLGL+I ++L GG V + S Sbjct: 377 LHVTVEDTGIGISPDNLDHVFGEFNQVEATSNRRFEGTGLGLAITRQLVHLMGGSVWVDS 436 Query: 777 S 777 Sbjct: 437 Q 437 >gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1331 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + + Sbjct: 811 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 870 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717 V+ + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ Sbjct: 871 TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 930 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IPE +S+F F R+ G GLGLSI L GG V++ Sbjct: 931 VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 990 Query: 776 SSDEGVTTINCRIP 789 S+ + +T +P Sbjct: 991 STPDRGSTFTLYLP 1004 >gi|221198738|ref|ZP_03571783.1| histidine kinase [Burkholderia multivorans CGD2M] gi|221205000|ref|ZP_03578016.1| histidine kinase [Burkholderia multivorans CGD2] gi|221174791|gb|EEE07222.1| histidine kinase [Burkholderia multivorans CGD2] gi|221181189|gb|EEE13591.1| histidine kinase [Burkholderia multivorans CGD2M] Length = 759 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 24/280 (8%) Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A +++ V VT+ V A L N LR A+ K+ F+ + +ELR Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ S+ G + + I ++ L++D+LD++ + G ++L Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + L D+++ + + + + R+ V D + D RL Q+ + +L+NA + Sbjct: 428 KEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486 Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 ++ G + L AR +GD + V+++G+ IP D S+F F R G+G+GL Sbjct: 487 TAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546 Query: 759 SIVESFINLHGGHVSISSSDEG------VTTINCRIPSKE 792 ++V+SF+ LHGG V S+ G VT R P+ E Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLPEYRPPAVE 586 >gi|16330789|ref|NP_441517.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653282|dbj|BAA18197.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 750 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 14/254 (5%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSL 602 E+ + E+ + LR A+ +K+ F+ ++S+ELR+PLT+IIG + L SL Sbjct: 355 EKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASL 414 Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +KQ Y+ I + LL+ +N I+ L+ +++G LN + L+ L V S+ Sbjct: 415 PPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGV 474 Query: 662 MHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + I +++ +G F AD++RL QI +++L+NA+ F+ TVIL+ +++ Sbjct: 475 AIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQA 534 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IF V++ G I E +F F +++ G+GL++ + + LHGG++ + SS Sbjct: 535 IFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESS 594 Query: 778 DEGVTTINCRIPSK 791 T IP + Sbjct: 595 PGQGTIFTTVIPQQ 608 >gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 885 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 7/238 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R L E +D +K++F+ ++S+E+R+PL I+GF+ L+ S ++ Y Sbjct: 494 KRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYN 550 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 ++A++ LL L+N+ILDL+ +++G ++ ++ L++L EV + + + + Sbjct: 551 IVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYE 610 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 SD L D+ R+ Q+ S ++ NA+ F+ +GS DN +F V + G+ I Sbjct: 611 SSDESL-MIETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIE 668 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF RF + Q G GLGLSI +S + GG +S++S TT +P Sbjct: 669 PEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724 >gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7] gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7] Length = 419 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 176/362 (48%), Gaps = 39/362 (10%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 E I+HL GV + IK+ NPA + + ++L +++ AT S + Sbjct: 83 ELINHLVIGVMLIDEHRIIKMVNPAMSVILGEDVSQLVGNSYVE---ATKS--------Y 131 Query: 498 DLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFV-NVTDSVRA 551 L I ++ +E+++ + D +++ +I+P+ P Q ++ + ++T+ Sbjct: 132 GLSHMIEMAYQKNEQQNDEIYFYYPKDKIVDANIVPIDGKEPGEQNLIVLLYDITE---- 187 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609 +R+ ++++ FV + S+EL++P+T + GF++ L G++ K+ Q+ Sbjct: 188 ----------IRRLEKVRTDFVTNASHELKTPVTALKGFSETLLD---GAMEDKEVLKQF 234 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E + A S+ L LVNDIL+L+ ++ + L I L + + Q + K E +++ Sbjct: 235 LEIMLAESSRLDFLVNDILELSKLEQKQVPLKIEEINLTEAVISTFQLVKQKADEKKMKL 294 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +I + L D RL QI + +++NA+ ++ + V + ++N + V +NG Sbjct: 295 NIIEEDNL-FITGDSSRLKQILANLINNAVVYTQESGEVEVTIKKENNFAVIKVSDNGIG 353 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPED +F RF V A G GLGLSIV+ + G +++ S TT + Sbjct: 354 IPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGFITVESKLGLGTTFIVK 413 Query: 788 IP 789 +P Sbjct: 414 LP 415 >gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483] gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483] Length = 563 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 143/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ ++ L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 310 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMICQT- 368 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 369 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 426 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K +++I DR RL Q+ +NA+ F+ KGS + ++ A+D Sbjct: 427 QEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 486 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N+ +G GLGL+I + GG + + Sbjct: 487 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 541 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + RIP E Sbjct: 542 ESKEGEGSRFWFRIPRSE 559 >gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] Length = 1065 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 129/238 (54%), Gaps = 12/238 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+E K+ F+ ++S+E+R+PL I+GFT++L+++ LN +Q +++ I SS LL++ Sbjct: 410 QANEAKSLFLANMSHEIRTPLNGIVGFTEILRST---DLNDEQREFLSIIDKSSENLLSI 466 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682 +N+ILDL+ +++ +++ + ++ A E NI + D + Sbjct: 467 INNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNFYMDPTINPKLKG 526 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFI----FSVKNNGSSIPEDMCK 736 D ++ +I +LSNA+ F+S G V L+ +D D + FSV++NG + +D + Sbjct: 527 DPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNGIGMTQDQQE 586 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F+ F R+ G GLGL+I F+ L GG + + S+ + TT IP +E Sbjct: 587 RIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFFFTIPFEE 644 >gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 571 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 176/363 (48%), Gaps = 41/363 (11%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 E I+HL GV + IK+ NPA + + +L +++ AT S + Sbjct: 235 ELINHLVIGVMLIDEHRTIKMVNPAMSVILGEDVTKLVGNSYVE---ATKS--------Y 283 Query: 498 DLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFV-NVTDSVRA 551 L I ++ +E+++ + D +++ +I+P+ P Q ++ + ++T+ Sbjct: 284 GLSHLIEIAYQKNEKQNDEIYFYYPKDKIVDANIVPIDGKEPGEQNLIVLLYDITE---- 339 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609 +R+ ++++ FV + S+EL++P+T + GF++ L G++ K+ Q+ Sbjct: 340 ----------IRRLEKVRTDFVTNASHELKTPVTALKGFSETLLD---GAMEDKEVLKQF 386 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E + A S+ L LVNDIL+L+ ++ + +N + L + + Q + E +++ Sbjct: 387 LEIMLAESSRLDFLVNDILELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKL 446 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +I + L F+ D RL QI + +++NA+ ++ V + ++N + V +NG Sbjct: 447 NLIEEDTL--FITVDSSRLKQILANLINNAVVYTQDSGEVTVTIRKENNQAVILVSDNGI 504 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPED +F RF V A G GLGLSIV+ + G +++ S TT Sbjct: 505 GIPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGSIAVESKLGLGTTFIV 564 Query: 787 RIP 789 R+P Sbjct: 565 RLP 567 >gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] Length = 599 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 131/250 (52%), Gaps = 13/250 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V +V R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + GS Sbjct: 347 VRGAVAVIRDMTEE----RRHDKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAGSEED 402 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K+ ++ + I S + LVN++LDLA ++AG ++L+ + L + + + + Sbjct: 403 KK-EFAKIIYDESLRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKD 461 Query: 665 NNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + R+ + DG SF D R+ Q+ + ++ NA+ + + V +K + F Sbjct: 462 EGVALRLDHVEDGYTNSF--DPDRIEQVLTNLIHNAIRHTGENGRVTVKVRSNEYGVKFD 519 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779 V + GS IPE+ VF RF A R G GLGL+I ++ ++ H G +S+ S DE Sbjct: 520 VIDTGSGIPEEDLPYVFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDE 579 Query: 780 GVTTINCRIP 789 G TT + IP Sbjct: 580 G-TTFSFFIP 588 >gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 570 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ ++ L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 317 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 375 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 376 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 433 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K +I+I DR RL Q+ +NA+ F+ KGS + ++ A+D Sbjct: 434 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 493 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N+ +G GLGL+I + GG + + Sbjct: 494 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 548 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + RIP E Sbjct: 549 ESKEGEGSRFWFRIPRSE 566 >gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Pseudomonas fluorescens SBW25] gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Pseudomonas fluorescens SBW25] Length = 771 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE AL E +A K+ F+ +S+ELR+PL +I+GF LL G Sbjct: 376 DITDRRAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSAGG-- 433 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +V +I + LL L+N++LD+A ++AG + LN I L L E ++ Sbjct: 434 --QKAHVGHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLAGALQEALALVSPMAA 491 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + I+++ + +G AD QRL Q+ +LSNA+ ++ V ++ + Sbjct: 492 DAGIQLQPLPALAADIG-IAADPQRLTQVLLNLLSNAIKYNQPQGQVSIEVKVEGPRIGV 550 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +V + G IP D +F F G GLGL++ +S + G +S+ Sbjct: 551 AVCDTGKGIPADKLGQLFKPFERLGADPNVEGSGLGLALSKSLLEKMDGQLSV 603 >gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 979 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 2/235 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + R++ E KA + K+ F+ +S+ELR+PL I+GF+ +L+ LN Sbjct: 577 DITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPLN 636 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 QSQ V+ IS + + LL L+N+ILDLA +++G + ++ ++ + ++ E I Sbjct: 637 PSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPFAD 696 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ I+I FV AD RL QI +LSNA+ ++ K VI + N + F Sbjct: 697 KHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKVNDKYRFH 756 Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G + + +F F N G G+GL++ + L G + ++S Sbjct: 757 VIDTGIGLSNSDLELIFKPFYRLNRINNSIEGTGIGLAVAKQLTELMNGEIFVTS 811 >gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 504 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 105 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 162 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L + L+++L E ++ Sbjct: 163 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAA 220 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + + ++G VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 221 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTI 279 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ DEG Sbjct: 280 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 339 Query: 781 VTTINCR 787 CR Sbjct: 340 -----CR 341 >gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase [Clostridium lentocellum DSM 5427] Length = 583 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 121/219 (55%), Gaps = 8/219 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 +K D+++ FV +VS+ELR+PLT + +T+ L G+++ K++ ++ + + + Sbjct: 348 QKLDQMRKEFVANVSHELRTPLTTVKSYTETLLD---GAIDEKETAMHFLGVMEKEADRM 404 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV D+L+L+ +D ++L + + L LL EV ++ + ++ +++V D K F Sbjct: 405 TALVQDLLELSRIDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYF 464 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D R+ QI ILSNA+ +S + T+ + ++N I + + G IPE+ + +F Sbjct: 465 IEGDLSRIRQILHNILSNAIKYSPEPGTLGVYMKKENAYVIVEITDTGMGIPEEDLERIF 524 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A + G GLGLSI + + LHGG + I S Sbjct: 525 ERFYRVDKARSRKMGGTGLGLSIAKELMLLHGGDIKIES 563 >gi|270293993|ref|ZP_06200195.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275460|gb|EFA21320.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 615 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E + ++ +K++F+ ++S+E+R+PL I+GF+D+L S G+ +Q Y Sbjct: 378 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 435 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I +S +LL L+NDILD++ ++A + L+ + + + +V S+A N + Sbjct: 436 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 494 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728 + ++ D QRL Q+ +LSNA F+ +G T+ LK D +FSV + G Sbjct: 495 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 553 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP D K VF RF Q G GLGLSI + + GG + I + Sbjct: 554 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 600 >gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78] gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78] Length = 1928 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1296 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1355 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M+++ + I L L++ V+ + E N+ Sbjct: 1356 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1415 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ +I A D D I Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1475 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I E + +F F R+ G GLGLSI Sbjct: 1476 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1536 LLGGEIDAQSQPGRGSTFTLYLP 1558 >gi|300702723|ref|YP_003744323.1| sensor protein [Ralstonia solanacearum CFBP2957] gi|299070384|emb|CBJ41679.1| Sensor protein [Ralstonia solanacearum CFBP2957] Length = 994 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 14/248 (5%) Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ERA + E R+A E K+ F+ +S+E+R+P+ ++G +LL + L +Q Sbjct: 352 ERARADAQETARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 408 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + V + SS LL++++DILD A ++AG + + + L +L + +A++ HE ++ Sbjct: 409 RMVTLMQESSRALLHILDDILDYAKIEAGHLSVTPTQTDLRELFDSTVGLLASRAHERSL 468 Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS 722 ++V D + + V+ D RL Q+ S +LSNA+ F+ +GS + A A D I Sbjct: 469 SVRVEVDATVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGTAADTAHLIIR 528 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G I + ++F FV + RR G GLGL+I L GG + + S Sbjct: 529 IADTGIGIAPEAQATLFTPFVQADNPAARRHGGTGLGLAISRQLARLMGGSLDMDSKPGV 588 Query: 781 VTTINCRI 788 TT+ R+ Sbjct: 589 GTTLTLRL 596 >gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 908 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 134/253 (52%), Gaps = 14/253 (5%) Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 N ML VN + ++ ++ E A IK+ F+ ++S+ELR+P+ +IG + Sbjct: 219 NRNKMLLLVNSELEQEIQKLKSAEEARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSH 278 Query: 593 L-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L L+T L+ KQ Y++ I +S+ LL ++NDILD++ ++AG M+L+ L+++L Sbjct: 279 LCLQTE----LSDKQQDYLQKIHSSAKSLLGILNDILDVSKIEAGKMELDRIAFELDEVL 334 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709 + + K HE N+ + + + + S V D RL Q+ + NA+ F++KG V+ Sbjct: 335 GNLSTILWAKSHEKNLELLLETAPDVPSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVS 394 Query: 710 LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 + ++ GD + F+VK+ G + + +F F R+ G GLGL+I + Sbjct: 395 IDLEKEEGDQVVLRFAVKDTGIGMSQSEIDKLFRPFTQADTSITRKFGGTGLGLTISKRL 454 Query: 765 INLHGGHVSISSS 777 I + GG + + S+ Sbjct: 455 IEMMGGKIWVEST 467 >gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 649 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 22/265 (8%) Query: 541 TFVNVTDSVRAE----RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL 593 ++T S +AE + L E +A +A+ +K+ F+ +S+ELR+PL IIG+ L Sbjct: 242 AIADITASKQAELERIQLLHEARQAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQL 301 Query: 594 LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLL 651 L++ G+LN Q + +E I ++ + L+ D+LD++ + G +KL I V++ +L Sbjct: 302 LRS---GTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVIL 358 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + + +++ NI I + + D++RL Q+F +L NA+ F+ ++ ++ Sbjct: 359 SSID-TVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIE 417 Query: 712 AARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767 +N F + + G I D+ +F+RF H+ R G+GLGL+IV + + Sbjct: 418 GGEENNQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEM 477 Query: 768 HGGHVSISSSDEGV---TTINCRIP 789 HGG S+ + EG+ +T +P Sbjct: 478 HGG--SVMAESEGIDKGSTFTVELP 500 >gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 474 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ D +E L + R++D +K++F+ ++S+E+R+PL IIGF +LL + + Sbjct: 211 SIHDHKISEDGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDIPFSE 270 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +++ +Y I+++ LL L++DILDL+ +++ M+ ++ L+ LL ++ Q+ M Sbjct: 271 AEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQAQRLCMP 330 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS 722 E +R+++ V D RL Q+ + +++NA F+ GS T ++ + Sbjct: 331 E-GVRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQGCEQVELF 389 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V + G I ++ +F RF +GVGLGLSI + GG +S+ S T Sbjct: 390 VHDTGKGIAQEHLDRIFERFYKAD--SFVKGVGLGLSICRTITEYLGGAISVESESGKGT 447 Query: 783 TINCRIP 789 + P Sbjct: 448 RFTIQHP 454 >gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 809 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+PL I G LL+T++L +S Q +YV+ +S++ L L+ Sbjct: 425 ANRAKSEFLANMSHEIRTPLNGITGMMQLLQTTRL---DSNQKEYVDLALSSASRLTRLL 481 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683 +DILDL+ V+AG M + + +L V + + E I ++ D L S + D Sbjct: 482 SDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGD 541 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL QI ++ N++ F+ +G I K D + +V + GS I + +F Sbjct: 542 ETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLF 601 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV RR G GLGLSIV ++L G +S+ S+ T +P K Sbjct: 602 QPFVQEDGSSTRRHEGAGLGLSIVSRLVDLMHGTISVDSAPGEGTAFYIFLPLK 655 >gi|168036813|ref|XP_001770900.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162677764|gb|EDQ64230.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 472 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 12/234 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E EA+ A+ K+ F+ +S+ELR+P+T ++G DLL +KL +Q + V+ + S Sbjct: 70 EACEAIEAANRAKSQFLAMMSHELRTPMTGVLGMLDLLHLTKL---EPQQQELVKIMQES 126 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L+ ++N+ILD ++AG + L L DL+ +V K+ E +R + +G Sbjct: 127 AEGLMQVINNILDFCKMEAGRLFLEEIDFSLGDLVEQVATLYEKKLQEKGLRF--VINGA 184 Query: 677 LGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSI 730 G+ VA D RL QI ++SNA+ F+ KG T+ L + N V + GS I Sbjct: 185 AGATVAVRGDPVRLRQIIVNLVSNAIKFTEKG-TITLSWRYVSGKNHYLEVKVADTGSGI 243 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +++ ++F + A R G GLGL+I + + L G + S+ G TI Sbjct: 244 AKELLGTLFTASQAGAPRRDSSGTGLGLAICKGLLELMKGKMLPVISEMGKGTI 297 >gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1331 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + + Sbjct: 811 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 870 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717 V+ + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ Sbjct: 871 TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 930 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IPE +S+F F R+ G GLGLSI L GG V++ Sbjct: 931 VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 990 Query: 776 SSDEGVTTINCRIP 789 S+ + +T +P Sbjct: 991 STPDRGSTFTLYLP 1004 >gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] Length = 2013 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1375 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1434 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M+++ + I L L++ V+ + E N+ Sbjct: 1435 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1494 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ +I A D D I Sbjct: 1495 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1554 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I E + +F F R+ G GLGLSI Sbjct: 1555 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1614 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1615 LLGGEIDAQSQPGRGSTFTLYLP 1637 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 555 LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 L ++ +A R KA+ IK+ F+ +S+ELRSPL I+G+ LL+T KL KQ+ + Sbjct: 1010 LLQREQAARTEAEKANRIKDEFLAVLSHELRSPLNPILGWAKLLQTKKLDGATFKQA--L 1067 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ + L+ D+LD++ + G + LN + L ++ +++ + +I I+ Sbjct: 1068 STIERNAQLQAQLIEDLLDVSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQ 1127 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D +G + D RL QI +LSNA+ F+S G V + +V + G I Sbjct: 1128 TTLDETVGQILGDPARLQQIVWNLLSNAVKFTSTGGRVEVLLESVGQSAQITVSDTGKGI 1187 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 + VF+ F R+ G+GLGL+IV + LHGG V S E Sbjct: 1188 TSEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVRHLVELHGGTVGAESPGE 1238 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 5/237 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EAL + D K F +VS+E R+PLT ++G + + T K L Q + +E + + Sbjct: 319 KRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLGPSQQERIEIVQRN 378 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVN +LD + ++AG ++ Y L+ E+ + + +R+ V Sbjct: 379 GLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAGMRLMVNCPPL 438 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMC 735 DR+ +I +LSNA F+ G +V L+ + + SV + G IPE Sbjct: 439 PEPVYVDREMWEKIVLNLLSNAFKFTLNGEISVSLEWVKHS--VKLSVNDTGIGIPEAEI 496 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GLS+V+ + LH G + + S + T IP+ Sbjct: 497 PLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTCFTIFIPT 553 >gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 596 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 132/260 (50%), Gaps = 12/260 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L + +T+L +N T ++ L E E A K+ F+ +S+E+R+PL +IG T Sbjct: 262 LNDNKTILNSLNTT-----QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQ 316 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + L+++Q Y++ I+ + LLN++NDILD + +DAG + + + L +L+ Sbjct: 317 ILFET---DLDAEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVR 373 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 E+ A + + + K I+ V+D R+ QI ++ NA+ F+ G VIL Sbjct: 374 EIFDLFAIEANTKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILS 432 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ +F +K++G I + S+F +F V + + G GLGL+I E + L Sbjct: 433 IKKEEHSILFQIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLE 492 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S +T C P Sbjct: 493 GKIGVESVKGVGSTFWCSFP 512 >gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] Length = 1236 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 126/252 (50%), Gaps = 14/252 (5%) Query: 544 NVTDSVRAERALTEK-NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +VT+++ AER E +AL A+E K+ F+ +S+++R+P+ I+G T L + Sbjct: 828 DVTETMTAERRSKETLEQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAHL- 886 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 K + I+ SS LL+L+NDILD++ ++ + LN + L+DLL ++ I Sbjct: 887 -DEREKVENCLRKITLSSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYSIIG 945 Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAA 713 + E ++ V + + F D R+ QI IL NA+ F+ G TV L Sbjct: 946 QQAQEAGLQFDVRTSNIIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEELPTI 1005 Query: 714 RDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + G + F++++ G +PE +F F N + G GLGLSI + I L GG Sbjct: 1006 KGPGYVRYCFTIRDTGIGMPESFLSHLFEPFTRNRNTEHVEGSGLGLSITKGLIELMGGE 1065 Query: 772 VSISSSDEGVTT 783 + + S + TT Sbjct: 1066 LLVESRERAGTT 1077 >gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1293 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 20/233 (8%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ K+ F+ +S+E+R+P+ ++G T+LL + L +Q ++ E I AS LL L Sbjct: 727 EANRAKSVFLATMSHEIRTPMNAVVGMTELLLDT---PLTPEQREFTETIRASGNQLLGL 783 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +NDILDL+ +++G ++L + L ++ + +A + H + + DG L + Sbjct: 784 INDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKGLELAARLDGTLPEVIRG 843 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------------FSVKNNGSS 729 D RL QI + +LSNA+ ++ G V+L A+ GD +V+++G Sbjct: 844 DDLRLRQILTNLLSNAVKYTDTGE-VVLTASWHAGDLSAPLDSPKRSPRLEIAVEDSGIG 902 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 IP+ +F F G RR G GLGL+I + GG + + + G Sbjct: 903 IPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGGTIHVENRPGG 955 >gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1333 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 753 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 812 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + + Sbjct: 813 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 872 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717 V+ + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ Sbjct: 873 TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 932 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IPE +S+F F R+ G GLGLSI L GG V++ Sbjct: 933 VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 992 Query: 776 SSDEGVTTINCRIP 789 S+ + +T +P Sbjct: 993 STPDRGSTFTLYLP 1006 >gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] Length = 263 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL EK L + + K+ F+ ++S+ELR+PL +++ L + G+L++KQ ++ Sbjct: 8 QAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLSAKQVEF 67 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S + LL L+NDILDL+ +++G + L+ S ++L N V ++ ++ Sbjct: 68 AKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEAKHLGF 127 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD------- 718 V ++D + + D RL Q+ +LSNA F+S G+ T+ L + D Sbjct: 128 SVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFTSHGNVSLTISLVTSGWTADHPHLLHA 187 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV++ G IP D + +F F R+ G GLGLSI L GG + Sbjct: 188 DAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLLGGEIR 247 Query: 774 ISSSDEGVTTINCRIP 789 + S+ +T +P Sbjct: 248 VESTVNIGSTFTLYLP 263 >gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 657 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%) Query: 549 VRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 V ER L EK EA A+ IK+ F+ VS+ELR+PL I+G++ LL+T KL K Sbjct: 274 VEEERIQLLEKAEA---ANRIKDEFLAIVSHELRTPLNPILGWSKLLRTRKLN--QDKVD 328 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHE 664 Q +E I ++++ L++D+LD++ + G KLN T+ + DL+ ++ +I T Sbjct: 329 QALETIERNASLQAQLIDDLLDVSRILRG--KLNLQTLRV-DLVRVIQAAIETMRLAAAA 385 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +I I D +G D RL Q+ +LSNA+ F+ KG + ++ + V Sbjct: 386 KSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEIDSQAQIQVS 445 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I D +F+ F R G+GLGL+IV I LHGG + S EG+ Sbjct: 446 DTGQGISPDFFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIEAES--EGI 502 >gi|162457113|ref|YP_001619480.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167695|emb|CAN99000.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 639 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 14/257 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T +V D R E+ ++ E L +A+E +K+ F+ VS+ELR+PLT I+G+ + + Sbjct: 238 TCTDVDDQKRLEQ---QRAEVLAQAEETSRLKDEFLAIVSHELRTPLTAILGWARMQR-- 292 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 S + +E I ++ L+ +IL+ + + G ++L +N+L+ + Sbjct: 293 ---SRPELAPKAMEVIERNAEAQARLIEEILESSRIVTGKIRLYPRNASVNELVRTAVDA 349 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + V D +G V D RL Q+ + +L NA+ F+ G V L+ A G Sbjct: 350 VRPAADAKAVALDVRLDPGVGEIVCDPDRLQQVVTNLLVNAVKFTPGGGQVGLQTALHPG 409 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +V + G I VF RF A Q G+GLGL+IV+ + LHGG V Sbjct: 410 GVEVTVTDTGKGISSAFLPHVFERFRQAEAATTRQHGGLGLGLAIVKYLVELHGGAVRAQ 469 Query: 776 SSDEGVTTINC-RIPSK 791 S EG C R+P + Sbjct: 470 SDGEGKGASFCVRLPVR 486 >gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 934 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 21/247 (8%) Query: 555 LTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L EK L +A EI K+ F+ ++S+ELR+PL I+GF ++ S+ +L+ + Sbjct: 445 LKEKTTQLEQAKEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIMHRSQ--TLSQEHQ 502 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + V I+ S LL+L+ND+LD++ ++AG + L+ + I L LL+EV + + Sbjct: 503 ENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQL 562 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG 717 ++ + D + ++ D ++L Q+ +LSNA+ F+ +G + + K Sbjct: 563 QLDIERDNNVPRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEV 622 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776 F V++ G I E+ +F F A + G GLGL I F+ L GG +S+ S Sbjct: 623 ILEFQVRDTGPGIAENEMDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISVQS 682 Query: 777 S-DEGVT 782 EG T Sbjct: 683 KVGEGTT 689 >gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli O157:H7 str. EDL933] gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ + + +++N + + Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 539 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ R + Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 658 VDSEPGMGSQFTVRIP 673 >gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1] Length = 1370 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 125/219 (57%), Gaps = 14/219 (6%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVND 626 +K+ F+ ++S+E+R+P+T ++G +LL +G L+ +Q +YVE I +S+T LL ++ND Sbjct: 796 LKSQFLANMSHEIRTPITGVLGMAELL----MGMELDQEQQEYVENIQSSATSLLTVIND 851 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--AD 683 ILD + V++G + + L+ ++ EV + + + N+ + + DG V D Sbjct: 852 ILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVGDGIENDLVVIGD 911 Query: 684 RQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 R+ QI + +L+N++ F+++G S V K + + FSV+++G I +D+ K +F Sbjct: 912 PGRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETSETIEVKFSVEDSGIGIQDDVRKKLF 971 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++ ++L G +++ S Sbjct: 972 QPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLES 1010 >gi|328958773|ref|YP_004376159.1| sensor protein VanS [Carnobacterium sp. 17-4] gi|328675097|gb|AEB31143.1| sensor protein VanS [Carnobacterium sp. 17-4] Length = 379 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + + + +Y + + Sbjct: 143 RQIEQSKDELITNVSHDIRTPLTSIIGYLGLIEERRYQN-EEELLKYTHTAYTKAKQMKV 201 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+ + V LN S + LL ++ + + N+ I+V++ + A Sbjct: 202 LVEDLFEYTKVRQTTTPLNLSEFDMVQLLEQLVADFELEAEKRNMVIEVVTAYESVLMEA 261 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F+ ++SNA+ + G V ++ + + I SV N+G IP+ +F+RF Sbjct: 262 DTEKLVRVFNNLISNALKYGKGGKKVFIEVQKAGKEAIISVNNDGQPIPQKSLDQLFDRF 321 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V + + G GLGL+I +S + LHGG++ +SSD +T +P K+ Sbjct: 322 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIY-ASSDRNLTRFVMHLPLKQ 372 >gi|311894136|dbj|BAJ26544.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1322 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 13/241 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R L E+ + L + K+ F+ ++S+ELR+PL +++ LL + G+L KQ +Y Sbjct: 767 QARRELEERAQQLTRTSMYKSEFLANMSHELRTPLNSLLILAQLLAQNTGGNLTGKQVEY 826 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ + LL L+NDILDL+ V+AG + + L +LL+ V + E + Sbjct: 827 AEVIRSAGSDLLQLINDILDLSKVEAGKLDVTVEPFELRELLDYVDTTFRPLAAEKGLDF 886 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR---------DNGD 718 ++ + G D+ RL QI +LSNA+ F+ +G + ++ AR D Sbjct: 887 RITAAPGAPEQLYTDQARLRQILRNLLSNAVKFTDRGFVELAVEPARPGELPTERSDLAA 946 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V+++G I D +S+F F R+ G GLGLSI L GG VS S Sbjct: 947 VAFRVQDSGIGIGADHLESIFGAFQQADGTTSRKYGGTGLGLSISRELARLLGGAVSAES 1006 Query: 777 S 777 + Sbjct: 1007 A 1007 >gi|260663756|ref|ZP_05864643.1| two-component system histidine kinase [Lactobacillus fermentum 28-3-CHN] gi|260551705|gb|EEX24822.1| two-component system histidine kinase [Lactobacillus fermentum 28-3-CHN] Length = 380 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%) Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567 G L ++ LE+ I P N Q ++T VN +T +++ ERA +EK+ Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620 K+ + +VS++LR+PLT+IIG+ LG + Q Q E I S I + Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 NLV D+ + V +N T+ L LL +V S + + + I V + S Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVSCEPTPLSI 261 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD ++L ++FS +++NA+ + S + L A + + +V ++G IP + K +F Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFE 321 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V ++ G GLGL+IV+S + LH G V+ + SD+ T +P K+ Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374 >gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 283 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 7/236 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 35 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 92 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 93 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAA 150 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + KLG VADRQRL+Q+ +LSNA+ ++ V ++ + + Sbjct: 151 DANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTV 209 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G I + +F F G GLGL++ +S + + G +S+ ++ Sbjct: 210 SVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNT 265 >gi|82702416|ref|YP_411982.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410481|gb|ABB74590.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 570 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + K EA KA+ K+ F+ +S+ELRSPL ++GF L+++S ++ + E Sbjct: 311 EELIKAKTEA-EKANLAKSDFLSSMSHELRSPLNVMLGFAQLMESSSPPPTFTQMTMLKE 369 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+++ LL L+N ILDLA +++G + + + + +++ E + + + E NIR+ Sbjct: 370 -INSAGWYLLELINKILDLAAIESGKLIVAQEPMCIGEVMAESRTMVEPQAQEQNIRLIF 428 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSS 729 + FV ADR R+ Q+ +LSNA+ ++ +G V + + G SV++ G+ Sbjct: 429 PPSSDMNFFVRADRTRVKQVLINLLSNAIKYNREGGMVEVSCSMTKPGRLRISVRDTGTG 488 Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +P + +F +F G G G+GL + + + L GG + + S+ Sbjct: 489 LPPEKLTQLFQQFNRLGQEAGSVEGTGIGLVVTKQLVELMGGSIGVEST 537 >gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1559 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 12/220 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K++F+ ++S+E+R+P+ ++G T L+ + LNS+Q ++E I S LL+L+ Sbjct: 892 ASKTKSAFLANMSHEIRTPMNAVLGMTGLMLET---PLNSEQQDFIETIRISGDALLSLI 948 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683 N+ILDL+ ++AG M L L+ L EV + +A H + I +I D Sbjct: 949 NEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQGD 1008 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIP-EDMCKSV 738 RL QI ++SNA+ F+S G V+ R F++ + G I ED C+ + Sbjct: 1009 AGRLRQILMNLISNAIKFTSNGEVVVRAELRSLSSTTATIYFAITDTGLGITFEDQCR-L 1067 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F F R+ G GLGL+I + ++L GG + + S Sbjct: 1068 FTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVES 1107 >gi|197122791|ref|YP_002134742.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172640|gb|ACG73613.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 417 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +V ER E+ L + D +K++F+ ++++EL +PLT + G+ +L++ KLG L +Q Sbjct: 146 AVAGERRAAER---LIEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 202 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + VE + S L +V+++ D A++ AG + +V + L ++V + + + Sbjct: 203 RIVEAMLGSVARLSRIVDNLSDFASLQAGRAPIVEQPVVPDQLADDVVAEHRPAIRDARL 262 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + V G G+ +AD ++L Q S I+SNA+ FS G V+++ R+ G F+V + G Sbjct: 263 HVAVSHAGG-GAVLADARKLRQALSNIVSNAVKFSPHGGEVLVEVGREPGRLRFTVYDQG 321 Query: 728 SSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + VF + G GLGL + HGG V + S Sbjct: 322 PGIGAAELEQVFEPLHHAAARAGEEARLPGSGLGLPVARRIAEAHGGRVWVESP 375 >gi|221211939|ref|ZP_03584917.1| histidine kinase [Burkholderia multivorans CGD1] gi|221168024|gb|EEE00493.1| histidine kinase [Burkholderia multivorans CGD1] Length = 759 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 24/280 (8%) Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A +++ V VT+ V A L N LR A+ K+ F+ + +ELR Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ S+ G + + I ++ L++D+LD++ + G ++L Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + L D+++ + + + + R+ V D + D RL Q+ + +L+NA + Sbjct: 428 KEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486 Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 ++ G + L AR +GD + V+++G+ IP D S+F F R G+G+GL Sbjct: 487 TAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546 Query: 759 SIVESFINLHGGHVSISSSDEG------VTTINCRIPSKE 792 ++V+SF+ LHGG V S+ G VT R P+ E Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLPEYRPPAVE 586 >gi|160871912|ref|ZP_02062044.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] gi|159120711|gb|EDP46049.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] Length = 657 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 139/258 (53%), Gaps = 10/258 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ +AE+A+ + EA A++ K F++++ +++R+PL+ IIG +LL+ SK Sbjct: 114 YVDITEKKKAEKAIIQAKEAAEVANQAKTEFLENMRHDIRTPLSGIIGCAELLQ-SKTND 172 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S+Y + SS LL+ N++L+ V G + L L E+ + Sbjct: 173 LTI--SEYANDLVKSSHALLDFHNNVLEGIQVATGEIPFVKKKFDLRQPLEEIINLNKSL 230 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD 718 E + ++ D ++ +V D R+ +I ++LSNA+ F+ KG + A +++ + Sbjct: 231 AAEKQLILQFHYDERIPQYVMGDPVRVQRILLELLSNALTFTKKGQVTVNIALKKKESRE 290 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 I SV + G IP+D + +F RF ++ +++G +G+GLGL+ V+ F++ G + + Sbjct: 291 VIVELSVSDTGMGIPKDKQEEIFIRFKRLTPSYKGIYKGLGLGLTTVKQFVDDLDGEIYV 350 Query: 775 SSSDEGVTTINCRIPSKE 792 S + T C IP +E Sbjct: 351 ESELDHGATFTCFIPFQE 368 >gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245] gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245] Length = 231 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 1/223 (0%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +KN F+ VS+ELR+PL +I+GFT L + + +++ I S L L+ D+ Sbjct: 1 MKNDFISTVSHELRTPLFSILGFTGTLLREQDELERETRMEFISIIHDESKRLSALIEDV 60 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 L ++ +D+G + S + + ++EV +S+ + E NI +++ + AD+ L Sbjct: 61 LMISKIDSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSL 120 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ I+ NA+ F+ G V + + FSV++NG IP + + +F +F Sbjct: 121 KQVAINIIGNALKFTPPGGVVQVSLFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVER 180 Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G+ G GLGLSIV+ + H G V + S T R+P Sbjct: 181 PGEAVDGTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLP 223 >gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] Length = 465 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+K ++I+ FV +VS+ELR+P+T+I GF++ L + S ++E + S L Sbjct: 236 LKKLEQIRKDFVANVSHELRTPVTSIKGFSETLLDGAYKDTETLLS-FLEIMHTESNRLE 294 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ND+LDL+ V+ ++N + ++ ++ I K+ E +I++K+ + + + + Sbjct: 295 MLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKL--EIQPVTVL 352 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL+Q+ +L NA+ +SS + + ++ R + I V++ G I +F R Sbjct: 353 GDANRLIQVMMNLLINAVTYSSNYTEITIRLFRKDNRAIIQVEDQGIGIESSEIGRLFER 412 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V A G GLGLSIV+ I H GHV + S+ TT +P Sbjct: 413 FYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLP 462 >gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 628 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 23/268 (8%) Query: 543 VNVTDSVRAERALT--------EKNEALRK----------ADEIKNSFVQHVSYELRSPL 584 ++VT+ ++AE+AL E+ +AL + A +K+ F+ VS+ELRSPL Sbjct: 209 LDVTERIQAEKALRQSELMVIEERAQALERERAARIELERASRMKDEFLAIVSHELRSPL 268 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I+G++ LL+T KL K Q +E I ++ L+ D+LD++ + G ++L Sbjct: 269 NGILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRP 326 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L ++ ++ + +I+I + +G AD +RL Q+ +LSNA+ F+ + Sbjct: 327 TKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPE 386 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 G V + + + V + G I + VF+RF R G+GLGL+IV Sbjct: 387 GGRVEICLEQVETNVQIRVTDTGKGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVR 446 Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789 + + LH G VS++S EG T ++P Sbjct: 447 NLVELHNGTVSVASPGEGQGATFTVQLP 474 >gi|310824792|ref|YP_003957150.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397864|gb|ADO75323.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 834 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 8/241 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609 A+RA E EA R +K+ F+ +S+ELR+PLT+I+G+T LL+ L ++ Sbjct: 453 AQRAQQEAQEANR----LKDEFLATLSHELRTPLTSILGWTQMLLRRDDLDEAGRRRG-- 506 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I ++ + LV D+LD++ + AG + L+ + L ++++ +S+ + + Sbjct: 507 LETIERNARVQRQLVEDLLDVSRIAAGKLTLDLREVKLREVVDAALESVRPTAEARGVVL 566 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + S +AD RL Q+ +L+NA+ F+ +G V L+A R+ +V + G Sbjct: 567 QAAPGEVSESVLADSTRLQQVLWNLLTNALKFTERGGCVRLEARREEAFVALTVSDTGKG 626 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 I VF RF G+GLGL+IV + + LHGG V + S G T R+ Sbjct: 627 IEAGFLPHVFERFRQGNTGRGHGGLGLGLAIVRTMVELHGGTVDVHSDGPGTGATFTVRL 686 Query: 789 P 789 P Sbjct: 687 P 687 >gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1855 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 55/290 (18%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L A +K+ F+ ++S+ELR+PL I+G ++ L+ G + KQ + + I Sbjct: 1411 LATTNAELAHATRLKDEFLANMSHELRTPLNAILGLSESLQEEVYGEITEKQRKSLATIE 1470 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+NDILDLA +++G ++LN + + ++ L + I E NI + Sbjct: 1471 KSGRHLLELINDILDLAKIESGKLELNLTAVRISQLCDASLSLIKPLALEKNITLSGNIA 1530 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD--------------- 718 LG+ + D +RL Q+ +LSNA+ F+ +G V ++ + D GD Sbjct: 1531 AGLGTILGDERRLQQVLINLLSNAVKFTPEGGQVTVEIRKQDGGDERDKEVNATFSQGGF 1590 Query: 719 -------------------------------------FIFSVKNNGSSIPEDMCKSVFNR 741 SV + G I ++ + +F Sbjct: 1591 CSNVTISSQKKIPKPAPTNHTLEGEEELTFNTSPNEMLYISVSDTGIGIAKEHREKLFQS 1650 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV RR G GLGL++V + LHGG V++ S + R+P Sbjct: 1651 FVQIDSSLSRRHQGTGLGLALVRRIVELHGGWVTVESEIGKGSCFTVRLP 1700 >gi|170690112|ref|ZP_02881279.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144547|gb|EDT12708.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 751 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 17/253 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEA--------LRKADEIKNSFVQHVSYELRSPLTNIIGF 590 +L+ V VT VRA L EK+ A LRKA+ K+ F+ + +ELR+PL I+ Sbjct: 337 ILSAVEVTGYVRARETL-EKSRADRELLLAELRKANGAKDEFLAMLGHELRNPLAPIVSA 395 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L++ + G+ ++ + + V I L+ LV+D+LD++ + G ++L+ + ++++ Sbjct: 396 LELME--RRGTDSAARERAV--IQRHVDHLVRLVDDLLDVSRIIRGNVELDKRRVDVHEV 451 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + + + + + R+K+ D L VAD RL Q+ + +L NA ++ G + + Sbjct: 452 ITKAVEMTSVLVQQRAHRLKIEVDEAL-ECVADPMRLAQVIANLLINAAKYTQAGGEITV 510 Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 A + D I V +NG I D+ VF+ F R G+G+GL++V++F+ L Sbjct: 511 SAMAADADHIRIRVCDNGMGIAPDVLPHVFDTFYQGTQTIDRAEGGLGIGLALVKNFVKL 570 Query: 768 HGGHVSISSSDEG 780 HGGHV +S G Sbjct: 571 HGGHVEAASGGPG 583 >gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 1436 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 14/251 (5%) Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V AER + EA + A E K+ F+ +S+E+R+P+ ++G +LL+ +KL Sbjct: 809 VTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q Q V + S LL++++DILD A ++AG + ++ + L ++ + +A++ HE Sbjct: 866 EQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPAATDLREVFDGTVGLLASRAHE 925 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR---DNGDF 719 ++ + V + + V+ D RL QI +LSNA+ F+ GS + + AR D Sbjct: 926 KSLAVHVTVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAECARVTDDTAHL 985 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I SV + G I + ++F FV RR G GLGL+I L GG + + S+ Sbjct: 986 IISVTDTGIGISPAVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESA 1045 Query: 778 DEGVTTINCRI 788 T + + Sbjct: 1046 QGQGTAVTLEL 1056 >gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 614 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 139/259 (53%), Gaps = 12/259 (4%) Query: 541 TFVNVTDSV-RAERALTE-----KN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +F + D + RA++ L + KN + L++ D +K+ + VS+ELR+PLT+I G+ D Sbjct: 355 SFNKMADEISRADKKLKKDADELKNSYDELKEVDNLKSELLSIVSHELRTPLTSIRGYVD 414 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LLK G LN KQ +++ IS +S L L++++LDL V+ ++ ++ + + + + Sbjct: 415 LLKDETAGKLNDKQHEFILIISENSDRLKRLIDNMLDLVKVENEVLDFKFNKLNIKNTVG 474 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 E+ S+ K ++ I ++ D D+ ++ Q+ + ++ NA+ FS + V + Sbjct: 475 EIISSL--KYFADSKNIILLEDVDEVYIKGDKSKINQVLANLIENAIKFSKNQTKVTVIG 532 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 D + + + G IP++ + +F +F + ++ + + G GLGL++ + + HGG Sbjct: 533 FEDKENLHLEITDQGPGIPKENLEKIFEKFYQIDSSSKREIGGSGLGLAVCKKIVESHGG 592 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S T+++ +P Sbjct: 593 SIWVESKVGKGTSVHILLP 611 >gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1] gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1] Length = 346 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 10/237 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ +E++ FV +VS+ELR+PLT+++GF + L+ + Q +++ + A + + Sbjct: 109 LRETEEMRRDFVANVSHELRTPLTSVMGFIETLRGPARND-PAAQDRFLGIMEAEAGRMN 167 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L++D+L L+ V+A K + L LL EV ++ + + R+++I D Sbjct: 168 RLISDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAPALVR 227 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSIPEDM 734 D +L+Q+F + NA+ + G V L+ +R G I V + G I Sbjct: 228 GDHDQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGIDSQH 287 Query: 735 CKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RF +AHR + G GLGL+IV+ +N H G + I+S +T + ++P Sbjct: 288 LPRLTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQLP 344 >gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 769 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 132/243 (54%), Gaps = 12/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+ L +K E + +++ +K++F+ ++S+E+R+PL I+GF++LL + + + ++ Sbjct: 532 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAET---CHSEETREF 587 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ +LL LVNDILDL+ ++AG M YS ++ L + Q+ +++ + Sbjct: 588 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 647 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 I + + +++ RL Q+ + L+NA F+ +GS + R++G + F VK+ G Sbjct: 648 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 705 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785 I VF RF Q G GLGLSI ++ + NLHG S +G T TI Sbjct: 706 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763 Query: 786 CRI 788 C + Sbjct: 764 CAV 766 >gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 761 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 163/368 (44%), Gaps = 26/368 (7%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC--SRYYNESD 495 E ID + +G+ + D R+ + N + + L G R++ Y E+ Sbjct: 251 EAIDTMPDGLGFYDADDRLVIWNARYAEVNTELAAALEVGAKFRDMLQIGLEQGLYAEAV 310 Query: 496 G----WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVN-VTDSV 549 G W I R+ L TLE + AQ ++T VN +TD Sbjct: 311 GREQEW------IEERLAARRRLSNTLEQQISGDRWLRVQDRRTAQGGIVTVVNDITDLK 364 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +AL E + A+ K+ F+ ++S+E+R+PL +IG T L ++ L+ Q + Sbjct: 365 RDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTE---LDHDQREI 421 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S L L++DILDLA V++G +++ L +NE E ++ Sbjct: 422 LNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPAAEKGLQF 481 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFI-FSV 723 V I G D RL Q+ + ++SNA+ F++KG V L AA RD + F+V Sbjct: 482 FVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKG-FVSLNAAVGRDRDGAAILRFTV 540 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G + +F RF RR G GLGL+I ++ GGH+ S G Sbjct: 541 EDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDCESEAGGG 600 Query: 782 TTINCRIP 789 +T +P Sbjct: 601 STFILTLP 608 >gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 650 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/365 (26%), Positives = 160/365 (43%), Gaps = 36/365 (9%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 ET+ HL V+ F G + NPA S + E+ G H R + R + + Sbjct: 132 ETLRHLPLAVSRFDAGGALVFQNPAAASAFGPED-----GPHARLLERFADREHGAAALR 186 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERAL 555 + A I ++ G E D L P+ + +L F+ ++++ +AE L Sbjct: 187 EARAGAIVRTQTRLRT--GAGERWHDVELRQGRDPV-TGKPLLLFMAGDISELKQAEAEL 243 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 E A +K+ F+ +S+E+R+PL IIGF DLL S L+ +Q +++ + Sbjct: 244 RAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSH---LDPQQRGFLDSLRE 300 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S+ +L L++D+LDLA ++AG M + L L+ V+ IA + E + ++ D Sbjct: 301 SARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDVIAFQAAEKRLVLEAQLDP 360 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------------KAARDNG 717 +L + D R+ Q+ +L NA+ F+ G + A R G Sbjct: 361 ELPRHLRGDALRIEQVLVNLLGNALKFTPAGRVSLRVRCVPECAGEDALECASAAGRCLG 420 Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D F V++ G I D +F F R G GLGL+I + + GG + Sbjct: 421 DVHRLRFEVRDTGVGISSDRLNILFEPFTQLDTSASRAIGGSGLGLAICKRLVEGMGGVI 480 Query: 773 SISSS 777 ++S+ Sbjct: 481 GVAST 485 >gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 1565 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 15/226 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ D +K F+ VS+ELR+PLT++ G LL + L ++ + + L+ Sbjct: 1317 RELDRLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREEPETVEHMLQIVLRNCDRLIR 1376 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LVNDIL+L +++G ++L ++ LL + ++++ E +I I++ S + + V Sbjct: 1377 LVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTS---ISAHVW 1433 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPE 732 A ++QI + +LSNA+ F+ +G+TV L A R +FSVK+ G IP Sbjct: 1434 ASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRGIPT 1493 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + ++F RF V + Q+ G GLGL+I +S I H G + + S Sbjct: 1494 NKLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDS 1539 >gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 720 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 11/232 (4%) Query: 552 ERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ER + EA R A+ K F+ ++S+ELR+PL I+G+ +L SL+ +Q Sbjct: 245 EREAAVEREARRMAEAANRAKGEFLANLSHELRTPLNGILGYAQILGRDD--SLSLRQRD 302 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V I S LL L+++ LD A V+AG +++ + L L++ +++ I K + + Sbjct: 303 GVAVIQQSGEHLLTLIDETLDFAKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLA 362 Query: 669 IK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 V +D G AD RL Q+ +LSNA+ F+ +G + ++G F V + Sbjct: 363 FACSVAADAPCG-VRADEHRLRQVLLNLLSNAVKFTDRGEVRLFIRRGESGAVRFEVHDT 421 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + +++F F A +RR G GLGL+I F+ GG V++ S Sbjct: 422 GIGICAEYHETIFMPF-EQAGGAERRAGGTGLGLAISRQFVRAMGGEVNVDS 472 >gi|302037583|ref|YP_003797905.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605647|emb|CBK41980.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 490 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D+IK+ F+ HVS+ELR+P+ +I T LL G L Q + +S SS L+ Sbjct: 251 LQQLDDIKSEFLAHVSHELRTPMASIQEGTHLLLDEIPGPLTQDQRTTLRIMSDSSRRLM 310 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L++ ILDL+ +++G+M+ ++ L + + I +R+ V + + Sbjct: 311 YLISTILDLSKMESGMMEYRFAPTDLRRVADISVNKIRLLADAKQVRLLVEAPVERHWVR 370 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD R+ Q+ +LSNA+ +S +G+ V L + RD G V + G IP + +F Sbjct: 371 ADSARIEQVLDNLLSNALKYSPEGAAVTLHMEPRRDEGLMFVDVTDCGPGIPTEEVPHIF 430 Query: 740 NRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 RF R + R G GLGL++ + + HGG + + S TT+ Sbjct: 431 ERFYQG--RTKTRHVSVGSGLGLALAKKVVEAHGGRIWVDSEVGKGTTVR 478 >gi|296448571|ref|ZP_06890444.1| histidine kinase [Methylosinus trichosporium OB3b] gi|296253911|gb|EFH01065.1| histidine kinase [Methylosinus trichosporium OB3b] Length = 589 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 6/209 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ VS+E+R+PL ++G LL ++ L+++Q+ YV+ I AS L L++DIL Sbjct: 76 KSRFLATVSHEIRTPLNGVLGLAQLLAATR---LDAEQASYVDAIGASGRSLAQLIDDIL 132 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D + ++AG ++L + L L+ V + +A + N+ I I+ D R+ Sbjct: 133 DFSKIEAGKVELRIESFALAPLVEGVVELLAPRAEAKNLEIAGFIAANAPERIEGDAARV 192 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ + NA++F+S+G + G +F V + G +P + +F F Sbjct: 193 RQVLVNLAGNAVNFTSEGGVGLRVEIDAEGALVFRVVDTGPGVPPGAREIIFEEFEQGDG 252 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSI 774 RR G GLGL+I L GG + I Sbjct: 253 SSTRRHGGTGLGLAISRHLAKLMGGRLEI 281 >gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 702 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 12/243 (4%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL + + G N K + I+ Sbjct: 311 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 366 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVI 672 +S+ L++D+LDL+++ G ++L ++ L + + E Q + + +++ V Sbjct: 367 SSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHVP 426 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + D RL Q+F +LSNA+ F+ + + D+G FI SV+++G I Sbjct: 427 PTPCL--VLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIAS 484 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R+P Sbjct: 485 EFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 544 Query: 790 SKE 792 + Sbjct: 545 EHQ 547 >gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens] gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1062 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 7/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + E A+ K+ F+ ++S+ELR+PL I+GF L+ T++ +L + Q++E Sbjct: 570 RQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPENRQHIEI 627 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I+ S LL L+NDIL+++ ++AG L + L + L ++ + N+ I Sbjct: 628 INRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLHLIFE 687 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI-FSVKNNGS 728 G + AD ++L Q+ +L NA+ F+ +GS + + RD D + F V++ G Sbjct: 688 RPKGLIRHIKADEKKLRQVLINLLGNAIKFTDEGSVTVRVSHQNRDASDLLQFEVEDTGL 747 Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + C+ +F F + G GLGL+I + F+ L G +++ S +T + Sbjct: 748 GIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVKLMGDEITVRSCLNRGSTFSFT 807 Query: 788 IP 789 IP Sbjct: 808 IP 809 >gi|260223388|emb|CBA33904.1| hypothetical protein Csp_B21370 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 393 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K+ F+ ++ELR+PL +I GF +L+ LG KQ + + I + L++L+N Sbjct: 151 DRMKSDFLSAAAHELRTPLASIYGFAELMLVRTLGP--EKQKELLGTIHRQAKSLIDLIN 208 Query: 626 DILDLATVDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--A 682 ++LDL+ ++A K LN + L L++ S +H + ++ D + G+F+ A Sbjct: 209 ELLDLSRIEARQGKDLNIVSCPLAALVD----STVGGLHYKAEKHLLVCDLRHGAFMVMA 264 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D ++ Q +LSNA+ +S +G TV L+ V++ G + E C Sbjct: 265 DPEKTRQALLNVLSNAVKYSPQGGTVTISTALRGVGGQQQVGVQVRDEGMGMDEAQCSRA 324 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F RF G G GLGLS+V+ + L G +SS+ TT+ +PS+E Sbjct: 325 FERFYRAHPLGDIPGTGLGLSLVQEIMQLQQGEAELSSAPGAGTTVTLWLPSQE 378 >gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator motifs [Rhizobium leguminosarum bv. viciae 3841] Length = 2099 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ KQ ++ Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LLNL++DILDL+ +++G + ++ I +++LL + + + N+ Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEISVSNLLEVMARPFRHEAENRNLSF 1525 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V + S + D +RL QI +LSNA F+++G + A+ +G Sbjct: 1526 AVEVGADITKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHA 1585 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G IP + + +F F R+ G GLGL+I NL GG + Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645 Query: 774 ISSS 777 + S+ Sbjct: 1646 LRST 1649 >gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum] Length = 1969 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 109/410 (26%), Positives = 192/410 (46%), Gaps = 61/410 (14%) Query: 413 IWMFENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466 I MF + VDL E++ +L ++ E + V DG I +NPAF S+ Sbjct: 808 ILMFYTILSSVDLKEIERKESRIQSLFRISNEAL--------VVHKDGLITDANPAFESM 859 Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-----QGTLEL- 520 ++ + L Y +S W+ A+ F+ L G +E Sbjct: 860 FQIKLQDL--------------LYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETT 905 Query: 521 -LSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKAD---EIKNSF 572 + S + + N T + +++ D + + L E + ALRKA+ E K F Sbjct: 906 GIDSSGRTFQVEVRTNKATYDGEPVDVISIID-ITGRKQLMEADYALRKAEAANEAKVIF 964 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + VS+ELR+P+ ++ D+L+ + +L+S Q +++ I S LL+L+NDILD + Sbjct: 965 LTTVSHELRTPINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSK 1021 Query: 633 VDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++AG M+ + Y +L L N ++ ++ ++E + + + D + V D++R+ QI Sbjct: 1022 IEAGKMEIIKYDFSILKMLDNSIR-IVSKNIYEKGLDLFIFIDPNVPVIVNGDQRRIKQI 1080 Query: 691 FSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VS 744 LSN++ F++ G +I +K D+ F V+++G I + +F F + Sbjct: 1081 LLNFLSNSIKFTNHGQIIIRVKLVTDDSTHSLIKFDVEDSGIGIKTEHLNPLFASFSQID 1140 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIP 789 + + + RG GLGLSI + + GG V + S+ GV TI C IP Sbjct: 1141 SGNSRKYRGTGLGLSISKRLCKMMGGDVKV-KSEFGVGSTFSFTIPCGIP 1189 >gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 673 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 23/358 (6%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNES-DGWDLFAAI 503 GV V + R+ N F E+N HI ++ T RY++ + + F Sbjct: 40 GVLVTDGNHRVIWVNSVF------EQNAGQEAMHIFGMSYTAIIRYFSRMVEHVEDFEQK 93 Query: 504 ITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEA 561 + ++K G +L D + E S PL + + V + D R + ++ + A Sbjct: 94 MRDLRLKKKPYFGWEIILRDGRIYEVSYNPLIEKRRFMGSVWQIVDVSRHKMPRSQLDLA 153 Query: 562 LRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+A+E + + F+ +S+E+R+PL I+G T LL+ + +L+ KQ Y+ + SS Sbjct: 154 RRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEET---NLDPKQRDYINILKHSSG 210 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 IL+ L++DILDL+ ++AG +++N L +L+ ++ + K+ + + I D +L Sbjct: 211 ILMGLISDILDLSKIEAGELQVNQREFNLTELVQSLRHTFELKIGQRPVSISASIDPQLK 270 Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPED 733 ++ V D L QI +L NA F+ +G I L + +++ ++ F V + G I +D Sbjct: 271 TWLVGDDMLLNQILMNLLGNAEKFTREGEIAINVQLDSWQEDKCWVTFQVCDTGIGIQKD 330 Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F + R G GLGL+I + + L GG + + +D T + +P Sbjct: 331 KLELIFQNYKQAEQEIRENYGGTGLGLAISKQLVELQGGSIVVEEADGFSTCFSFTLP 388 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 17/274 (6%) Query: 531 IPLPNAQ-TMLTFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSY 578 IPL N Q ++ + + ++ A++ L + E+L +A+ IK+ F+ +S+ Sbjct: 1144 IPLKNEQGKIVKWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSH 1203 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELRSPL I+G+ LL+T + ++ + I ++ + L+ D+LD++ + G + Sbjct: 1204 ELRSPLNPILGWAKLLQTQNFNAETYQKG--LSTIERNAALQAQLIEDLLDISRIMRGKL 1261 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 L + L ++ +++ I I+ D +G + D RL QI +LSNA Sbjct: 1262 NLKIVPVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNA 1321 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 + F+ G V +K + + +V + G I + VF+ F + R+ G+GL Sbjct: 1322 VKFTPTGGQVNVKLEGSGNEAVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGL 1381 Query: 757 GLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 GL+IV + LHGG V+ +S E T + ++P Sbjct: 1382 GLAIVRHLVELHGGTVTANSPGENQGATFSVKLP 1415 >gi|13472176|ref|NP_103743.1| sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14022921|dbj|BAB49529.1| probable sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1622 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 13/252 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A RAL EK E L + K+ F+ ++S+ELR+PL +++ ++LL ++ G+LN KQ ++ Sbjct: 927 ARRALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSNLLAANQQGNLNEKQVEFA 986 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+++ T LL+L+NDILDL+ +++G + ++ + + + L + ++ + + Sbjct: 987 RTINSAGTDLLSLINDILDLSKIESGTVSIDINDMPVAHLRQHMDRTFRQLAADKGLGFT 1046 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNG------DF 719 + D +L V D +RL QI +LSNA F+S G + K R NG Sbjct: 1047 INVDPELPETVRTDEKRLQQIVLNLLSNAFKFTSAGEVRLDFRVEKTGRRNGARQPKRAL 1106 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +V + G IPED K +F F R+ G GLGLSI L GG + + S+ Sbjct: 1107 AIAVTDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELRVEST 1166 Query: 778 DEGVTTINCRIP 789 +T IP Sbjct: 1167 PGKGSTFTLMIP 1178 >gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1308 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 10/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T +AE L + + A+ K+ F+ ++S+ELR+PL I+GFT LL Sbjct: 819 TIFDITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDH-- 876 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L + + ++ I+ S LL L++DILDL+ ++ G + + L LL V++ + Sbjct: 877 CLRPEHLERLQIINRSGEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQP 936 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715 K +R+ + L ++ D ++L Q+ +L+NA+ F+ +G TVIL KAA + Sbjct: 937 KAKTRGLRLIIEKSFDLPQYIKTDEKKLRQVLINLLNNAIKFTQEG-TVILRVKPKAAEN 995 Query: 716 NGD-FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +F V++ G + D +F FV + A + +G GLGL+I + F+ L GG + Sbjct: 996 TPQRLVFEVEDTGVGMAPDDIDQLFKVFVQAEAGKKLNQGTGLGLAISQKFVQLMGGEIE 1055 Query: 774 ISSS 777 + S+ Sbjct: 1056 VKST 1059 >gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces ambofaciens ATCC 23877] Length = 1331 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 14/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + ++ Sbjct: 811 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTTQKGLQF 870 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---------GD 718 V + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ G Sbjct: 871 TVSTAAGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAHDDEVPPGVVRGGA 930 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G IPE +S+F F R+ G GLGLSI L GG V++ Sbjct: 931 VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREMAQLLGGAVTVD 990 Query: 776 SSDEGVTTINCRIPS 790 S+ + +T +P+ Sbjct: 991 STPDRGSTFTLFLPA 1005 >gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1095 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 22/242 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D+IK+ FV VS++LRSPLT + G+T +L+ +G LN +Q YV+ I + + Sbjct: 857 FKELDQIKSDFVATVSHDLRSPLTLMKGYTTMLQM--VGELNEQQKAYVQKIISGVENMS 914 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--------VIS 673 LVN++LDL ++AGI L ++++ +++EV ++ + + I ++ VI Sbjct: 915 RLVNNLLDLGRIEAGI-GLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEWQSTAPVIV 973 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 +G DR L Q ++ NA+ ++ G V ++ + + V + G I P Sbjct: 974 EG-------DRALLQQALYNLVENAIKYTPSGGKVSIRLEERSESLVLKVVDTGIGIAPL 1026 Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D+ + +F +F + R Q+RG GLGL+IV+S + H G V + S +T + +P Sbjct: 1027 DLPR-LFEKFYRSGRRESYQQRGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELPL 1085 Query: 791 KE 792 ++ Sbjct: 1086 RQ 1087 >gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1120 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E EA +A +K+ F+ ++S+E+R+P+ ++G LL SL +K +Y + I Sbjct: 400 LVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRL---SLEAKPREYAQTIY 456 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL+++NDILD + ++AG M+L L+ + + + + E + + V+ + Sbjct: 457 RSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNVLIE 516 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730 + D RL QI +++NA+ F+ +G ++ LK++ + IFSV+++G I Sbjct: 517 SSVPRQLQGDPGRLKQILLNLVNNAIKFTDRGQVLVRVSLKSSTVDRKLIFSVRDSGIGI 576 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + K +F F V + Q G GLGL I + + + GG + + +S Sbjct: 577 SPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTS 625 >gi|300788622|ref|YP_003768913.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299798136|gb|ADJ48511.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1546 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 15/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L A + K F+ ++S+ELR+PL + + LL + G+L KQ Q+ Sbjct: 1118 QARQELEERAGQLTVASQYKTEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQF 1177 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I A+ + L L+NDILDLA V+AG + + S I L +L++ V+ + + Sbjct: 1178 AKTIYAAGSDLQQLINDILDLAKVEAGRLDMQMSDITLPELVDYVESLCRPLTADKGLEF 1237 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDN- 716 V D + GS D RL QI +LSNA F+ +G + V +A R+ Sbjct: 1238 AVHIDPPVPGSVHTDEHRLQQILRNLLSNAAKFTDEGGVRLHIRSADPAEVEQEALRNAP 1297 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 G F+V++ G IPE+ +F F R+ G GLGL+I + L GG + + Sbjct: 1298 GIIAFAVEDTGIGIPEEKLAVIFEAFRQADGTTSRKYGGTGLGLNISQQLTELLGGELRV 1357 Query: 775 SSSDEGVTTINCRIP 789 S +T +P Sbjct: 1358 VSEPGVGSTFTLYLP 1372 >gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 740 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 16/240 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAE L E+ KA+ K+ F+ ++S+E+R+P+ I+G T+L + L + + Y Sbjct: 340 RAEE-LGEQKAIAEKANRAKSEFLANMSHEIRTPMNGIMGMTEL---ALLSEIPDQTRSY 395 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ +S+ LL+++NDILDL+ ++AG + L+ L L+ V +A +N + + Sbjct: 396 LQMAKSSALHLLSIINDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPLAMTARKNGVAL 455 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD-----FIF 721 + D + + + D+ R QI + I+ NA+ F+ KG + D+ GD +F Sbjct: 456 TCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRKGQVEVGVRPADSAGGDAGRSRLLF 515 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V+++G IP +++F F S+AH + G GLGL I + F+ + GG + + S + Sbjct: 516 WVRDSGIGIPAGRLEAIFESFAQATSSAHI-EFGGTGLGLPISKKFVEMMGGSIWVESEE 574 >gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] Length = 765 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 25/274 (9%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 FDDE + G +E+ + N + ++T +E L E + A Sbjct: 277 EFDDEMGDMIGAVEIFKE-----------NTEKLIT---------SEHQLKIAMEDAKNA 316 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++ K+ F+ +S+ELR+PL I+GF ++LK S + +++ + + I S LLN++N Sbjct: 317 NQAKSIFLARMSHELRTPLNAILGFANILKKSMNAT--NQEKENLNIIKKSGEHLLNIIN 374 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 +IL+L+ ++AG +++N +L+ E++ A + N++ + L F+ AD Sbjct: 375 EILELSKIEAGKIEINPKNFDFCELIKEIEDIFALRCKSKNLKFTINQTNNLPKFIKADE 434 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QRL QI +L N++ F+++G + L N F VK+ G I + +F F Sbjct: 435 QRLRQILINLLGNSLKFTNEGQ-IFLNIYSLNNKLFFEVKDTGIGIDLKNQEKIFKPFEQ 493 Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ++G GLGL+I + I L GG + + S Sbjct: 494 VKLDNYTQQGTGLGLAITKELIALMGGTIYVKSQ 527 >gi|92117022|ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799916|gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 536 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607 E+A +EA +A+ K+ F+ +S+ELR+PL I+GF++++K+ G + Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I S LLNL+N+ILDL+ ++AG +LN + L ++ + + + I Sbjct: 304 SYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSRGI 363 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726 I + + + D + QI +LSN++ F+ +G + LK +G SVK++ Sbjct: 364 TIHEVFEHGMPRIWGDERATRQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVKDS 423 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 GS I ED V F +N+ + +G GLGL I +S I++HGG ++ S Sbjct: 424 GSGIAEDEIPIVLASFGQGTNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRS 475 >gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L+ +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L + V D RL QI + ++SNA+ F+ +G T++ +A D+ SV++ G + Sbjct: 391 PL-ALVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 922 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 15/262 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T+ R E AL EA +A+ K+ F+ ++S+E+R+PL ++G L++ S + Sbjct: 524 FTDITERKRYEDALVVAKEAAEQANRAKDEFLANISHEVRTPLNGVMGMLQLIRVS---A 580 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + +Q V+ SS LL ++ND+LD + ++AG + L L L+ + + Sbjct: 581 TSGEQLANVDIAIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQ 640 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 E + + I ++ D R+ Q+ +L NA+ F+ GS + A + + Sbjct: 641 ADEKGLVLDSRIDPSARECYLGDEGRIRQVLFNLLGNAIKFTMYGSITLEAYALAHPEPG 700 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 FSV + G IP+ +F+ F V ++ + +GVGLGL IV+ I L GG + Sbjct: 701 CERLFFSVTDTGVGIPDSKVDYIFDSFTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLV 760 Query: 774 ISSSDEGVTTI----NCRIPSK 791 + S TTI RIP+K Sbjct: 761 VDSEMGAGTTILFNVQVRIPAK 782 >gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 938 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 11/260 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 E PL + M +VT+ E+ L E +A +A K+ F+ ++S+E+R+P+ Sbjct: 514 FEIRYFPLDENRMMSLAKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHEIRTPMN 573 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++G DLL + +L+ +QSQY+E I S + LL+++ DILD + ++AG M LN + Sbjct: 574 GLLGIIDLLDHT---NLDEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKMDLNPTLG 630 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L + Q E +I +K I G F D R+ Q+ ++ NA+ F+ + Sbjct: 631 NPAEELEKQIQIFYGLAQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGNALKFTPQ 690 Query: 705 GS--TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 TV + A + + + VK++G IPE S+ + F V ++ +G GLG Sbjct: 691 NGQVTVSMDAEQIENELHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRSYQGTGLG 750 Query: 758 LSIVESFINLHGGHVSISSS 777 L+I + + L GG ++I+S+ Sbjct: 751 LAIAKKIVELMGGELNINST 770 >gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1823 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFA 1402 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + + Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1462 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A RD Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGRDVPVAIREQLLEA 1522 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1523 GSLRDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1582 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1583 LLGGEIHAQSEPGRGSTFTLYLP 1605 >gi|254509661|ref|ZP_05121728.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11] gi|221533372|gb|EEE36360.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11] Length = 502 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/390 (20%), Positives = 168/390 (43%), Gaps = 26/390 (6%) Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240 T +K + S+ I ++ + + VW D A + W N +Y + + + Sbjct: 130 TPVKHRDPSDPI---RLAMEQAPYPVWLVDNAKKVRWCNAAY--------VTLARKVAGP 178 Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI- 299 I L + ++ + + + RV+ + A+D++ + Sbjct: 179 DADLTSPIFPAFGDEPPLGRKTRVSIPVKDSTAKLWFDLTRVIRDQDQLCYAVDINAIVE 238 Query: 300 --TVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356 T + T + L++ +AIFD+NR L N + ++L + FL+ PS Sbjct: 239 AETAQRKFVQTMTKTFAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLSLRPSLSSFF 298 Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIW 414 + LR + +PE N+++W+ + + ++++ +++TW LP+G V +P G + Sbjct: 299 DRLRDQHMMPEPKNYRSWRRQMNDLLEAAQDGNYQETWSLPSGSVYSVSGRPHPDGAVAF 358 Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-KTEENR 473 +FE++T ++ L ++ + + + +D L++ +AVF DG + +N A+ +W +E Sbjct: 359 LFEDITAEITLTRRFRSEMDLMQSILDKLADAIAVFTDDGSLAFTNYAYHMMWGDCDEVG 418 Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSII 531 P T + ++ + L I + + R G L L + + ++ Sbjct: 419 FEPLT----VLEITRQWQDRCTATPLLGEIRDFVTGRENRAEWSGELALKTGGTVTCTVS 474 Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 P+ N T++ F T+S AE A K A Sbjct: 475 PMQNGATIVRF--ATESAAAEIARMHKISA 502 >gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 731 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 19/246 (7%) Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ER + E+ + L+ A+ K+ F+ ++S+EL +PLT IIG + L+ K + N+ Sbjct: 343 ERRVIERTQELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQ--KCSAANN 400 Query: 605 -----KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 KQ Y++ I + LL L+ND+L+ + V AG L+ L L N V + I Sbjct: 401 FLPPDKQKHYLKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIK 460 Query: 660 TKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 T+ E N+ +++ K F AD R+ QI +L NA+ F+ + V L+ ++ Sbjct: 461 TEAETKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTLRLWKEGS 520 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 IF V++ G IP +F +F +RR GVGLGL++ + + LH G + + Sbjct: 521 QVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVELHRGTIEVE 580 Query: 776 SS-DEG 780 S D+G Sbjct: 581 SCLDKG 586 >gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of antifungal antibiotics [Pseudomonas fluorescens Pf-5] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 660 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E +A+++K++FV ++S+E+R+PL I+GF+ LL + +Q +Y Sbjct: 416 SEIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV--ETTDEQKEYA 473 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669 + I +S +LL L++D+LD++ +++G + Y ++N N + + + + ++R+ Sbjct: 474 DIIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTRKNRTRDIDVRL 533 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727 ++ + + D RL Q+ +L+NA+ F+ G ++ L D D +FSV + G Sbjct: 534 QMPKEPYM--LYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTG 591 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + IPED + VF RF Q G GLGL+I + I GG + I + Sbjct: 592 AGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKN 639 >gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 538 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 10/235 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L A A+ K++ + ++S+E+R+P+T ++G D+L S SLN Q + Sbjct: 140 KRLKNSERAADSANRAKSALIGNISHEIRTPMTAVLGLCDVLLQS---SLNDDQRNLLSM 196 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I + + L+ +VND+LD++ ++A ++++ I L D L+++ + + +EN+ + V Sbjct: 197 IRDNGSYLVEIVNDLLDISKMEADMLEIKPLAINLRDFLDDLISIMGVRANENSTTLDVG 256 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGS 728 +D AD RL QI +LSNA+ F+ G + A D+ + I F V++NG Sbjct: 257 FADDVPEWIFADPIRLRQILLNLLSNAIKFTPNGKVRLEAQNAGNDSQNLIRFVVEDNGC 316 Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 IP++ +++F F+ + + RG GLGLSI I GG + + S DEG Sbjct: 317 GIPQEDLENIFLPFMQSGTDLANRSRGTGLGLSICRRLIVAMGGRIDVESVIDEG 371 >gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 1102 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 12/251 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 A + +VT++ R E L E A A+ K+SF+ +S+E+R+PL ++G +LL Sbjct: 484 RAALLCALNDVTEARRGEARLREAIRAADAANRAKSSFLATMSHEIRTPLNGMLGSIELL 543 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S+ L+ +Q + + +S L++++ND+LD + ++AG M L L++++ EV Sbjct: 544 SLSR---LDPRQRDQLAVMQHASQSLIDIINDVLDFSKIEAGQMSLQPRPCRLDEVVEEV 600 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710 ++ A + +R+ I+D L V AD +L QI + ++SNA+ F+ +G ++ Sbjct: 601 TRNFAAEAARKRLRLLCINDPSLSEPVMADAVKLEQILNNLISNAVKFTEQGKVIVTARR 660 Query: 711 -KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 ++A G V + G I + +F FV R G GLGLSI + Sbjct: 661 KRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFVQAEQSDTRHYGGTGLGLSICRRLV 720 Query: 766 NLHGGHVSISS 776 L G + + S Sbjct: 721 ELMRGEIRVVS 731 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] gi|133738736|emb|CAL61783.1| Sensor protein KdpD [Herminiimonas arsenicoxydans] Length = 921 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT+++G ++ L SK L S Q + + + + + NL Sbjct: 680 ESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSK-PPLTSSQQELAQALHDEARRMSNL 738 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V+++LD+A + +G +K N + +++ ++ + + + I+ ++ D L F D Sbjct: 739 VSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVRF--D 796 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 + ++ ++ NA ++ GS +++ AA +G F+ SV +NG +P +++F++F Sbjct: 797 AVLIERVLCNLIENAAKYTPAGSRIVI-AAEISGRFLEVSVYDNGPGLPAGQEEAIFDKF 855 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GVGLGL+I + + H G + + S +G +IN +P Sbjct: 856 TRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1814 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1309 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFA 1368 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1369 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALIQLVDYVEATFRPLTAEKGLDFS 1428 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D D I Sbjct: 1429 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPDGIREQLLEH 1488 Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 FSV + G I + +F F R+ G GLGLSI Sbjct: 1489 GALRDPDAEMIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1548 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1549 LLGGEIHAASEPGRGSTFTLYLP 1571 >gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1482 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 131/247 (53%), Gaps = 7/247 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A L ++ + L A ++K+ F+ ++S+ELR+PL +++ LL + +L +Q + Sbjct: 937 QARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLADNVDTNLTPRQVDF 996 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+NDILDL+ ++AG M++ + + DL + + E +R+ Sbjct: 997 AQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAATFQPLAAEKGLRL 1056 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-NGD--FIFSVK 724 +V ++ G + AD QR+ QI +LSNA+ F+ G T+ + AAR +G+ F+V Sbjct: 1057 RVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDTGEVTLRVTAARGAHGEPAIAFAVV 1116 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I ED + +F F R+ G GLGLSI L + +SS+ + Sbjct: 1117 DTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLSAELRVSSAPGRGS 1176 Query: 783 TINCRIP 789 T ++P Sbjct: 1177 TFTLQLP 1183 >gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359] gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359] Length = 412 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 185/394 (46%), Gaps = 45/394 (11%) Query: 413 IWMFENLTVQVDLETKYNTLVKVQGET----IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468 +++FE L +D V+V + ++ LSE + + +G I N A R L Sbjct: 46 LYLFERLKKYIDNLKDRIARVEVSRDNFLTILNSLSEPIFILDREGNITFLNEAARRLV- 104 Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSV 525 ++R+SP RYY + + ++ I S + + +GTL ++ Sbjct: 105 --QDRISP---------EGRRYYEIFEDYYINEMVEETIKSLEPQ----EGTLVTYIEND 149 Query: 526 LEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +Y +IP+ FV + V ER L DE++ F+ VS+ELR+ Sbjct: 150 KKYFHVKVIPVDLKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRT 199 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PLT+I G+ + L L + ++++ I S + +L+ND+LDL ++ ++ Sbjct: 200 PLTSIHGYAETLLEDDLEN-KELVKRFLKIIEEESARMTHLINDLLDLEKMEESSVEFEM 258 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L ++++ V + + EN + +++ D + + +++RL+Q+ ++ NA+ ++ Sbjct: 259 KELDLCEVVDYVYRIVQPIAEENEVELEI--DCENVTVKGNKERLIQMLLNLVDNAVKYT 316 Query: 703 S---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 S KG + A D D+ + V++ G IP++ +F +F V A + G GL Sbjct: 317 SLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGIPKEAQSRIFEKFFRVDKARSRKMGGTGL 376 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 GL+IV++ ++ HGG + + S T + +P Sbjct: 377 GLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPK 410 >gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 881 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 24/252 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E+AL E N A K+ F+ + +E+R+PL + G T LL ++L N +Q ++V Sbjct: 227 SEQALEELNRA-------KSEFLAMIGHEIRTPLNAVTGMTGLLLDTQL---NDQQKEFV 276 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL ++N+ILD + ++A ++L L + EV + ++ + N+ + Sbjct: 277 SIIRNSGENLLTMINNILDFSKIEAQKLELEEQPFELGPCIEEVLRLFVSQASKKNLELA 336 Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNG-----D 718 +I + + D RL QI + ++ NA+ F+ KG VI +K+ +D+ + Sbjct: 337 YLIESNTPSAIIGDSTRLKQILANLIGNAVKFTKKGEVVIYVNATPIKSRQDSKQNSRYE 396 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G IP D C +F F R+ G GLGL+I + L GG++ + S Sbjct: 397 LRFAVKDTGIGIPSDRCNRLFQPFSQVDASTTRKYGGTGLGLAISKGLSELMGGNMWVHS 456 Query: 777 SDEGVTTINCRI 788 ++ +T N I Sbjct: 457 TEGKGSTFNFTI 468 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + ++++NE L+ AD++K+ F+ S+ELR+PL ++G + L G + Q + +E Sbjct: 430 KVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEM 489 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G + +N + L + V + + + +RI Sbjct: 490 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 549 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L +AD QRL QI ++ NA+ ++S+G +IL + V + G IP Sbjct: 550 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGK-IILSSTVLESQIRIQVVDTGQGIPA 608 Query: 733 DMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776 + + +F + A+ G R+G GLGLSI I+L GGH+ +SS Sbjct: 609 EQLEHIFEPLI-QANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSS 654 >gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+++ G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + + GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016] gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 1072 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT E+ L + +A E+K+ F+ ++S+E+R+P+ IIG + L LKT L Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ YV I +S+T+LL ++NDILD + ++AG + + + L+D+ + V K Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 E + + + + D RL QI +++N++ F+ KG TV + R+ D + Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F + + G + + KS+F F R+ G GLGLSI + L GG + + Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510 Query: 776 S 776 S Sbjct: 511 S 511 >gi|331700971|ref|YP_004397930.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] gi|329128314|gb|AEB72867.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus buchneri NRRL B-30929] Length = 388 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 138/259 (53%), Gaps = 12/259 (4%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q+++ +N + DSV +++ E+ R + K+ + +VS++LR+PLT+I+G+ L Sbjct: 121 NTQSVVESINALVDSVI--KSMDEE----RAIESSKDELITNVSHDLRTPLTSILGYLGL 174 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S +Y E + + +LV+++ + V L+ S I LN ++ + Sbjct: 175 IRDKQYHS-QEDLLKYTEIAYLKAKQMKSLVDNLFEYTKVKQTGTPLSISKIDLNQMMEQ 233 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + S + ++ + I K AD ++L ++F+ ++SNA+ + G + L AA Sbjct: 234 LVASFELEADKSGLAIAAKETDKPLYIEADAEKLGRVFNNLISNAIKYGKGGHHIYLSAA 293 Query: 714 RDN-GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 G+ + V N+G IP+ +F RF V ++ G GLGL+I +S I+LHGG Sbjct: 294 VGQPGEVVIHVANDGPEIPQKSLDQIFERFYRVESSRNKDTGGSGLGLAIAQSIIDLHGG 353 Query: 771 HVSISSSDEGVTTINCRIP 789 ++++ SSDE +TT +P Sbjct: 354 YINV-SSDEKLTTFAIHLP 371 >gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1097 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 11/251 (4%) Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 P + + FV + T + E L KA K+ F+ +S+ELR+PL +IG T Sbjct: 539 PASSLCIGFVLDATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTPLNGVIGMTQ 598 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL ++L +S Q Q+ +S LL L++DILDL+ V+AG ++L L +L+ Sbjct: 599 LLMNTEL---DSDQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQPFRLGNLIT 655 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----T 707 EV+ S + + + + G + DR RLL++ +L NA F+ +GS T Sbjct: 656 EVEDSTRPALEADGLTFQNTRQFPEGLVLRGDRVRLLRVLMNLLGNAGKFTPEGSISLVT 715 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + + + D D FS+ + G I +F+ F RR G GLGL+I + + Sbjct: 716 RMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGLGLAICKHLV 775 Query: 766 NLHGGHVSISS 776 G + + S Sbjct: 776 EAMEGEIGVES 786 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TM+T + E+ L + +A ++ IK F +VS+E+R+PL +IG +LLK Sbjct: 247 TMMTVLEAR-----EQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM 301 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 LN KQ +YV+ S LL L+ +ILD + +++G KL+ L ++L++V Sbjct: 302 ---GLNPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGL 358 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 +A + + + V+ D S D R+ QI +++NA+ F+ +G I L+ Sbjct: 359 LAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK 418 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + F V++ G IP + VF F R+ G GLGL+I ++L GG Sbjct: 419 KAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478 Query: 771 HVSISS 776 + + S Sbjct: 479 DIGVES 484 >gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] Length = 1072 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT E+ L + +A E+K+ F+ ++S+E+R+P+ IIG + L LKT L Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ YV I +S+T+LL ++NDILD + ++AG + + + L+D+ + V K Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 E + + + + D RL QI +++N++ F+ KG TV + R+ D + Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F + + G + + KS+F F R+ G GLGLSI + L GG + + Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510 Query: 776 S 776 S Sbjct: 511 S 511 >gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1501 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 544 NVTD--SVRAERA---LTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++TD ++ AER L+E+ EA A+ IK+ F+ +S+ELRSPL I+G+T LL+T Sbjct: 1100 DITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHELRSPLNPILGWTKLLQT 1159 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++Q+ ++ I ++ + L+ D+LD++ + G M LN S + L + Sbjct: 1160 RPFDPQRTQQA--LQTIERNAKLQTQLIEDLLDISRILQGKMVLNTSPVNLITTIEAALD 1217 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ I ++ +G D RL QI +L+NA+ F+ G V+++ + + Sbjct: 1218 TVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAVKFTPAGGKVLIRLEQVD 1277 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V++ G I VF F + R+ G+GLGL+IV HGG V + Sbjct: 1278 SFAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGLGLAIVRYLTEQHGGTVEV 1337 Query: 775 SSSDE 779 S E Sbjct: 1338 ESRGE 1342 >gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3309 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 135/284 (47%), Gaps = 24/284 (8%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AER--ALTEKNEALRKA 565 D + ++ G L ++ D I PL A+ L +N R +ER AL + N AL +A Sbjct: 2779 DVQGNVMGILAMIED------ITPLKQAEETLKNINEELEARVSERTAALEQTNHALAEA 2832 Query: 566 DEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 EI K+ F+ ++S+ELR+PL I+G+ +L S ++ + + +E I + Sbjct: 2833 KEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRSD--QISPRDKRGLEVIHQCGS 2890 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL L+NDILDL+ ++A ++LN L LL+ V K + I + D L Sbjct: 2891 HLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKATQKGIELLFQLDNDLP 2950 Query: 679 SFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPED 733 V D +R Q+ ++ NA+ F+ KGS L+A F++ + G I + Sbjct: 2951 KGVEIDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQATLRFAIIDTGVGIATE 3010 Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F F R G GLGL+I + + L GG + +SS Sbjct: 3011 QLSRLFKAFEQVGDPRNHTEGTGLGLAISQRIVQLMGGDIQVSS 3054 >gi|23501466|ref|NP_697593.1| sensor histidine kinase [Brucella suis 1330] gi|161618552|ref|YP_001592439.1| integral membrane sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225627084|ref|ZP_03785122.1| sensor histidine kinase [Brucella ceti str. Cudo] gi|254701372|ref|ZP_05163200.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|254703917|ref|ZP_05165745.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|254707707|ref|ZP_05169535.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|254709710|ref|ZP_05171521.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|254712867|ref|ZP_05174678.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|254716779|ref|ZP_05178590.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|256031201|ref|ZP_05444815.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|256159299|ref|ZP_05457094.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|256254609|ref|ZP_05460145.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|256369016|ref|YP_003106524.1| sensor histidine kinase [Brucella microti CCM 4915] gi|260168337|ref|ZP_05755148.1| sensor histidine kinase [Brucella sp. F5/99] gi|260566834|ref|ZP_05837304.1| sensor histidine kinase [Brucella suis bv. 4 str. 40] gi|261757798|ref|ZP_06001507.1| sensor histidine kinase [Brucella sp. F5/99] gi|294851947|ref|ZP_06792620.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|23347370|gb|AAN29508.1| sensor histidine kinase [Brucella suis 1330] gi|161335363|gb|ABX61668.1| integral membrane sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225617919|gb|EEH14963.1| sensor histidine kinase [Brucella ceti str. Cudo] gi|255999176|gb|ACU47575.1| sensor histidine kinase [Brucella microti CCM 4915] gi|260156352|gb|EEW91432.1| sensor histidine kinase [Brucella suis bv. 4 str. 40] gi|261737782|gb|EEY25778.1| sensor histidine kinase [Brucella sp. F5/99] gi|294820536|gb|EFG37535.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 609 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 913 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT +LKT LN+ QS Y++ I S+ LL Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTP----LNATQSDYLQTIERSANNLL 337 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L + +L + ++EV +A HE I + + I + Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ Q+ + +L NA+ F+ KG+ I L++A + + V + G I E Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHDTGIGISERQQS 457 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 458 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 499 >gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1853 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 3/244 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R+L EK E L+ K+ F+ ++S+ELR+PL +++ + +L ++ G+L +Q ++ Sbjct: 1438 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVKFA 1497 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S LL L+N+ILDL+ ++AG M + L + ++++Q+ + + Sbjct: 1498 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQ 1557 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V L + D RL QI ++SNA F+ +G V+ + G F+V++ G Sbjct: 1558 VRMAPDLPDRIHTDPTRLQQILKNLISNAFKFTERGEVVLEVSPAAGGALAFAVRDTGIG 1617 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP D K +F F R+ G GLGL+I L GG + + S+ + Sbjct: 1618 IPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLV 1677 Query: 788 IPSK 791 +P++ Sbjct: 1678 LPAR 1681 >gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae T7901] gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae T7901] Length = 1096 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 33/361 (9%) Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 +G+ + D RI +NP F L ++ S G +R+ + ++ D + Sbjct: 500 QGLVITTLDARITYTNPMFTRLTGSDTTPES-GRSLRD--------FYPAETADFLDKDV 550 Query: 505 TSFDDERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLTFVNV-----TDSVRAERAL 555 +R +G L LL +++ ++I + + F+ V ++ R E+ L Sbjct: 551 FPITRQRGVWRGELALLNAQGANTTTLHTIFTVMSEYDTPLFLGVIITDISEQKRIEQEL 610 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 + E A+ K+ F+ ++S+E+R+PL IIG+ LL L + +E+I + Sbjct: 611 EKAKEDAEFANRSKSMFLANMSHEIRTPLNAIIGYAQLLTHDT--ELRGETHNQIEHIYS 668 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYST----IVLNDLLNEVKQSIATKMHENNIRIKV 671 + LL L+NDILDL+ +++G +L +T + LN LL ++ TK N + + Sbjct: 669 AGNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRAVTKGLRLNADLDL 728 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730 S + S DRQ+L QI +L NA+ F+S+G + R D I V + G I Sbjct: 729 PSPALVTS---DRQKLAQILINLLGNAIKFTSEGEVSL--QCRHQADRIRLVVSDTGEGI 783 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + K +F FV +G+R G GLGL +V++F L GG +++ S+ T + + Sbjct: 784 SAEEQKYLFTPFVQGV-QGERVGSGTGLGLILVKNFTALLGGELTLESTAGRGTRVIVSL 842 Query: 789 P 789 P Sbjct: 843 P 843 >gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas ingrahamii 37] Length = 1574 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LT N A+ KA+ K+ F+ ++S+E+R+P+ IIG ++L S + + Y+ Sbjct: 811 RRLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSEL---SLNQDMTPQLRDYLSK 867 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S LL ++N ILD + ++AG + L L D+L+ + + + E NI + Sbjct: 868 IHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITS 927 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 D + V D R QIF+ +++NA+ F++KG I + + D +FSV + G Sbjct: 928 IDPDVPWHLVGDPLRTGQIFTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTG 987 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP+D S+F F R+ G GLGLSI + + G + I S Sbjct: 988 LGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIES 1038 >gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] Length = 1072 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT E+ L + +A E+K+ F+ ++S+E+R+P+ IIG + L LKT L Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ YV I +S+T+LL ++NDILD + ++AG + + + L+D+ + V K Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 E + + + + D RL QI +++N++ F+ KG TV + R+ D + Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F + + G + + KS+F F R+ G GLGLSI + L GG + + Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510 Query: 776 S 776 S Sbjct: 511 S 511 >gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 602 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+N A A+ K+ F+ VS+ELR+PL +I+GFT LL+ + + + ++ I + Sbjct: 367 ERNRA-EVANRAKDEFLATVSHELRTPLNSILGFTQLLR--RHAGDPERLAVALDAIERN 423 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L D+LD++ + G +KL + +N L++ +++ T NI + I Sbjct: 424 AKAQARLTEDLLDVSRIITGKLKLTIQPVRVNALVDAAIETMRTAAEAKNIALSAIYPEA 483 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + AD RL Q+ +LSNA+ F+ G + + R G +V ++G I + Sbjct: 484 PCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIRVSVERRAGQVHIAVADSGMGIAAEFLP 543 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTI 784 VF+RF R G+GLGL+IV + LHGG V S+ ++G T + Sbjct: 544 FVFDRFRQADSSSTRTFGGLGLGLAIVRHLVELHGGSVEAHSAGPNQGATFV 595 >gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 637 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL+ S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L + L+ +L E ++ Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAA 495 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + + ++G VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 496 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ DEG Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 423 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P P A +L + ++T+ + + AL + +++AD++KN+F+ ++S+E+R+PL I+G Sbjct: 151 PDPGASPLLLIMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F L+ + S +Q +Y I+ + +LL L+NDILDL+ +++G + N S + L D Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706 + E + KM + + ++ + V D R+ Q+ +LSNA+ F+SKG Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + D F+ SV + G I E+ +SVF RFV Q G GLGL I + + Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376 Query: 766 NLHGGHVSISS 776 GG + + S Sbjct: 377 EQLGGEIGVRS 387 >gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72] gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72] Length = 613 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E S+ PL + L ++T+ R ERAL EKN L +A+ K+ F+ +S+ELR+ Sbjct: 339 VEISLSPLETEEGTLVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRT 398 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL IIGFT L G LN Q + + + S++ LL+L+ND+LD+A ++AG + + Sbjct: 399 PLNAIIGFTGTLLMKLPGPLNEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVF 458 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L L E+ + + +R+++ G D++ QI +L NA+ F+ Sbjct: 459 EPVDLCATLEELAVVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFT 518 Query: 703 SKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVG 755 G + L AR D V ++G I P+D + + F R A Q G G Sbjct: 519 EHGR-IELALARIEADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQ-EGTG 576 Query: 756 LGLSIVESFINLHGGHVSISSS 777 LGL + GG +++ S+ Sbjct: 577 LGLHLCLKLAAQLGGQIAMHST 598 >gi|291539873|emb|CBL12984.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain [Roseburia intestinalis XB6B4] Length = 421 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 25/271 (9%) Query: 537 QTMLTFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 QTML V + D+VR R +++ A + E+K F+ +S+E+++P+ I+ Sbjct: 3 QTMLIAVLIAALVGLFLFDTVRLRRMQVQRDAAKEEVAEVKTEFLSRISHEIKTPMNVIV 62 Query: 589 GFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644 G T LG ++ + +E I +S L+ L+ND++D++ ++ G L+ Sbjct: 63 GAT------ALGLEETEHPERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKP 116 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + LNEV+ + IR + + + + D R QIF +LSNA+ F+ + Sbjct: 117 YSFTEFLNEVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPE 176 Query: 705 GSTV---ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLG 757 G V I A N F + V +NG + E+ + +F F + ++G+R G GLG Sbjct: 177 GGEVTFRICNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGERGNGAGLG 236 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788 L+IV S ++L GG +++ S + T I + Sbjct: 237 LAIVRSIVDLMGGTITVKSEPQKGTEIKVHL 267 >gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 1128 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 5/247 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R A+ K L +A + K+ F+ ++S+ELR+PL +++ + LL + G+L ++Q Sbjct: 439 DLERTSAAVALKARELEQASQYKSDFLANMSHELRTPLNSLLILSKLLSDNPNGNLTAEQ 498 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHE 664 ++ + I +S LL+L+NDILDL+ ++AG +++ ++ L L +++Q + + Sbjct: 499 VKFAQTIESSGNDLLSLINDILDLSKIEAGHIEVRPESVSLQRLTGDLRQLFNPVADSRK 558 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + I+V +D L DRQRL Q+ +LSNA F+ KG + A N F+VK Sbjct: 559 LDFAIEVAADCPL-VVETDRQRLEQVLKNLLSNAFKFTEKGGVRLEIKAASNDRIAFAVK 617 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G + D +++F F R+ G GLGLSI L GG +++ S + Sbjct: 618 DTGIGVSRDQQEAIFEAFRQADGTISRKYGGTGLGLSISRQLSRLLGGSITLESQPGEGS 677 Query: 783 TINCRIP 789 IP Sbjct: 678 VFTVTIP 684 >gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM 17393] gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM 17393] Length = 536 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L E E +A+ +K++F+ ++S+E+R+PL +I+GF+ +L ++ + K+ +Y + Sbjct: 286 EQDLREAKEKAEEANRLKSAFLANMSHEIRTPLNSIVGFSSILTMTE--DMEEKK-EYNQ 342 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++T+LL +V+D+L+L+ ++AG KL + L+DL V +S A + + ++ V Sbjct: 343 LIQHNNTLLLKVVDDVLELSKLEAGDFKLYPAWFCLSDL---VVESAAECRMKADGKLDV 399 Query: 672 ISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D ++ D Q + +I S LSNA+ + G I + D G I SVK+ G Sbjct: 400 RVDKPEQDYMVELDAQYVKRILSNFLSNALKNTQSGHIDIAYSMVDGGVKI-SVKDTGCG 458 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D VF+RF Q GVGLGL I +S GG + ++S T +P Sbjct: 459 IPQDKLPVVFDRFEKVDSFAQ--GVGLGLPICKSIAESMGGTIGVTSEVGAGTAFWVTLP 516 >gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 631 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 16/242 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I Sbjct: 240 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 294 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672 ++S+ L++D+LDL+++ G ++L ++ DL+ +V++++ T+ + +V+ Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 351 Query: 673 --SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + + D RL Q+ +LSNA+ F+ + +K RD+G + SV ++G I Sbjct: 352 LHAPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGI 411 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R Sbjct: 412 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 471 Query: 788 IP 789 +P Sbjct: 472 LP 473 >gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 904 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ER L E K+ F+ ++S+E+R+P+ ++G LL+T+ +L Sbjct: 490 DITEQHHHERELRRAKEMADAGSRAKSEFLANMSHEVRTPINGVVGMLQLLETT---ALT 546 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV ++ L L+ DILDL+ V++G + L + L +L + Sbjct: 547 EEQQEYVAMAGRAAGRLSRLLGDILDLSKVESGALVLQQTPFELEELRQAILDVFGPMAR 606 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARD 715 N+ + V ++ + D RL QI ++ NA+ ++ G + R+ Sbjct: 607 NKNLALSVDLAQALPRRVMGDDVRLRQILLNLVGNAVKYTDSGFVHVAVFPGDPDSPPRE 666 Query: 716 NGDF--IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F +F V + G IP SVF+ FV ++ G + GVGLGL+IV+ + L GG + Sbjct: 667 GAPFEVVFVVADTGRGIPGHKLDSVFSPFVQTDPAAGPQGGVGLGLAIVKRLVELMGGRI 726 Query: 773 SISSSDEGVTTINCRIP 789 + S + T++ +P Sbjct: 727 HLCSVEGQGTSMRAVVP 743 >gi|148559005|ref|YP_001258574.1| sensor histidine kinase [Brucella ovis ATCC 25840] gi|148370262|gb|ABQ60241.1| sensor histidine kinase [Brucella ovis ATCC 25840] Length = 609 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|223937695|ref|ZP_03629597.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893667|gb|EEF60126.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 982 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 138/272 (50%), Gaps = 8/272 (2%) Query: 523 DSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSY 578 D E + P+P + +T++ V + D ++A TE +AL + E+ K+SFV VS+ Sbjct: 702 DFPAEIFLTPIPLHGRTVIQAV-INDITERKQAETELLKALAREKELGVLKSSFVSLVSH 760 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGI 637 E R+PL I+ ++L S L L + Q ++E I+ ++ + ++ ++L V+AG Sbjct: 761 EFRTPLGIIMSSAEILH-SYLDQLETIHRQEHLESIAKNAKRMAGMMEEVLLFGQVEAGK 819 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 M+L+ + + L+ +K I + + I + + AD + L IF+ +L N Sbjct: 820 MELHPAPLSLSSFCRRLKDEILSAT-DGQCPIVLTMEAFPTDIFADERVLRHIFTNLLLN 878 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757 A+ +S GS V A++ D +F V++ G IPE + +F F ++ G GLG Sbjct: 879 AVKYSRAGSPVHFMVAQEGKDAVFQVRDQGIGIPEADQQWLFKAFHRGSNAANLPGTGLG 938 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L IV+ + LH G + + S + T I R+P Sbjct: 939 LVIVKRSVELHNGRIKVESVVDQGTAITVRLP 970 >gi|289642527|ref|ZP_06474671.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] gi|289507701|gb|EFD28656.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] Length = 904 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 16/253 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EK E L + + K F+ ++S+ELR+PL +++ LL + +L KQ + E I Sbjct: 387 GLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLLLAKLLADNPEANLTPKQIDFAETI 446 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ + LL L+NDILDL+ V+AG M + +T+ L + V Q E + +V + Sbjct: 447 HSAGSELLELINDILDLSKVEAGKMDVEATTVRTTTLCDAVAQIFGPLAEERGLSFEVTV 506 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI----------- 720 + FV D QR+ Q+ +LSNA+ F+ G + + A D F Sbjct: 507 ASDVPAEFVTDEQRIQQVLKNLLSNAVKFTDSGEVRLDVTVASDEIAFTAPSLSAAPVAL 566 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 FSV + G + D + +F F RR G GLGLSI + + L GG + ++S+ Sbjct: 567 AFSVSDTGIGVAADKLRMIFEAFQQADGTTSRRYGGTGLGLSISKELVRLLGGAIGVASA 626 Query: 778 DEGVTTINCRIPS 790 +T +PS Sbjct: 627 VGQGSTFTLYVPS 639 >gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] Length = 1436 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T V L E E+ +A + K+ F+ ++S+E+R+PL +IGFTDL+ +K LN Sbjct: 780 NITALVAQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTK---LN 836 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q QY+ + S+ LL+++NDILD + ++AG ++L+ L ++ ++ I ++ Sbjct: 837 ETQHQYLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKCDLYEMASQATDIITYQIQ 896 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 + + + L F+ AD RL Q+ +L N+ F+ KG + L++ ++ Sbjct: 897 NKGLEMLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEKGEIELKIENLESEGNSNT 956 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F FSV++ G I + +F F ++ G GLGL+I + L + + S Sbjct: 957 FRFSVRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLGLTITNKLLGLMDSKLQLKS 1016 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + ++++NE L+ AD++K+ F+ S+ELR+PL ++G + L G + Q + +E Sbjct: 444 KVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEM 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G + +N + L + V + + + +RI Sbjct: 504 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L +AD QRL QI ++ NA+ ++S+G ++ +N I V + G IP Sbjct: 564 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGKIILSSTVLENQIRI-QVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776 + + +F + A+ G R+G GLGLSI I+L GGH+ +SS Sbjct: 623 EQLEHIFEPLIQ-ANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSS 668 >gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] Length = 1021 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 551 AERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 A RA+ E N + L A E K+ F+ +S+ELR+PL IIG ++ L G L K Sbjct: 267 AVRAIEEANRLATIQQLSTAIERKDDFLSAMSHELRTPLNGIIGLSESLMAGACGQLPEK 326 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + + + S LL L+NDILD A + G + + + + + L+ +V ++ + Sbjct: 327 AVKTISTVKLSGKRLLQLINDILDAAKMKQGTLVIKHEKVDIKRLVTDV-LDLSLPLVRK 385 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724 +R+ V + G + V D R++QI ++ NA F+ +G ++ + DN +V Sbjct: 386 GVRL-VNNVGNVPKIVGDNGRIVQILYNLVGNAAKFTRQGVISITAGVSEDNIKVYVTVS 444 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IP++ +F F RR G GLGL +V+ + HGG +++ S Sbjct: 445 DTGVGIPKEKVPKIFGAFEQADMSTTRRYGGTGLGLHLVKELVKAHGGEITVES 498 >gi|239617738|ref|YP_002941060.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506569|gb|ACR80056.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 580 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 137/251 (54%), Gaps = 16/251 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F+++T+ +R E L ++ E ++ + +F ++S+ELR+PLT I+G++++L Sbjct: 318 FLDITEQLRRENFLKKQKEEAELLNKSQAAFFSNISHELRTPLTIILGYSEMLYEI---- 373 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + + V I+ S+ LL LVNDILD++ + + +K+ ++ + L+N + + + Sbjct: 374 VGPAERRMVSMIADSANYLLKLVNDILDISKITSRAVKVEPESVNIKLLVNNILEQFNSL 433 Query: 662 MHENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + I++ + KL +FV D+ +L +I + ++ NA+ F+++G +L + Sbjct: 434 VEKKGIKL----ESKLMICRENFVTDKTKLQRILTNLIGNAIKFTNEGVVRVLVKEEGSN 489 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F+F+V++ G I ++ VF RFV + ++G GLGL + + + L GG + Sbjct: 490 VFLFAVEDTGIGIKKEYQDKVFERFVQIKDDRSRVKFKKGTGLGLPLTKELVQLLGGRIW 549 Query: 774 ISSSDEGVTTI 784 + S TT+ Sbjct: 550 LQSEYGKGTTV 560 >gi|163795590|ref|ZP_02189556.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179189|gb|EDP63722.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 577 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 546 TDSVRAERALTEKNEALRK--------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 DS+ A R E + L A K+ F+ VS+ELR+PL I+GF++++ Sbjct: 314 ADSLAAARDRAEAQQVLEAQLRAQADSASRSKSEFLALVSHELRTPLNAILGFSEIIAQQ 373 Query: 598 KLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G + ++Q Y I+ S LL+L+NDILDL+ ++AG +L T VL D+L+ Sbjct: 374 TFGPSTADRAQSYARDINESGNHLLSLINDILDLSKIEAGRYELMEETFVLRDVLDRCAT 433 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + ++ E N I + G ADR+ ++Q+ +LSNA+ F+S V L A + Sbjct: 434 LLRERVAEKN--IGLTCHGTSICLNADRRAVMQVVINLLSNAVKFTSPRGRVELFATVAH 491 Query: 717 GDFIFSVKNNGSSIP-EDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +V + G + ED+ +S+ F + + H G GLGL+I E LHGG + Sbjct: 492 DAIEIAVSDTGVGMSHEDLQRSLQPFGQ-ADSLHTRSSGGTGLGLNIAEMLTKLHGGSLG 550 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T R+P Sbjct: 551 LRSTLGEGTVATIRLP 566 >gi|256060709|ref|ZP_05450873.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 609 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|238925848|ref|YP_002939366.1| VanS [Eubacterium rectale ATCC 33656] gi|238877525|gb|ACR77232.1| VanS [Eubacterium rectale ATCC 33656] Length = 354 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A ++A+E KN + ++++++R+PLT +IG+ LL + ++ +YV+ + L Sbjct: 124 AAKQAEEKKNEIIMYLAHDIRTPLTTVIGYLSLLHEAP-DMPEQQKEKYVKVALNKAERL 182 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+N++ ++ +A + + I L+ L+ +V I + N ++ L S Sbjct: 183 EKLINELFEITKYNAHTVIIKKENIDLHCLIAQVIDEIYPTLSANGNTAVFTAEDNL-SV 241 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD ++L ++FS +L NA +S + + + A R D + +N G +IP++ S+F Sbjct: 242 NADPEKLARVFSNLLRNAASYSYPQTEITISAKRLEHDIQITFENRGKTIPQEQLNSIFE 301 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +F + +A G GLGLSI E I+LHGG ++ SS +E + Sbjct: 302 KFNRLDDARLSNTGGAGLGLSIAEEIIHLHGGKITASSQNETI 344 >gi|311746327|ref|ZP_07720112.1| sensory box histidine kinase [Algoriphagus sp. PR1] gi|126576563|gb|EAZ80841.1| sensory box histidine kinase [Algoriphagus sp. PR1] Length = 484 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 1/233 (0%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L+K D ++ + +VS++LR+PL I G+ + L+ + +Y++ I AS+ Sbjct: 251 EELKKVDSLRRELIANVSHDLRNPLAIINGYVETLQIKGDSVSEEDREKYLKIIGASTDK 310 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LV+D+ DL+ +++G M L + + +LL + +I+I L Sbjct: 311 LSQLVSDLFDLSKLESGQMSLKMERMKIQELLYDSSLKYELLAQSKDIKITTQICQNLPL 370 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD + ++ +L NA+ ++ K +++ A NG ++N+GS IP+ +S+F Sbjct: 371 VKADLYLMDRVIQNLLDNAVKYTPKNGEILIDACESNGGVSIKIRNSGSGIPQKDLESIF 430 Query: 740 NR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +R ++ + R G GLGL+IV+ + +HG + I S T +P++ Sbjct: 431 DRYYMIDKERKGIEGSGLGLAIVKRILEVHGSQIEIESDSVSYTEFGFDLPAE 483 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length = 1389 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 4/245 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R RA + E L + D K F ++S+E R+PLT I G L+T +L Sbjct: 317 SARGYRAQQRRAEELAELDRAKTIFFSNISHEFRTPLTLIAGPVQELRT-RLAGAEPALR 375 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + VE I + L LVN +LD + ++AG M+ Y + L L E+ + + + + Sbjct: 376 EEVEVIHRNGLRLGRLVNALLDFSRLEAGRMQARYEPVDLAALTRELASVFRSAIEKAGL 435 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 R V DR ++ +LSNA+ F+ G+ + ++A G + +V + G Sbjct: 436 RFDVDCPPLPFPVYVDRGMWEKVVLNLLSNAVKFTFDGA-ITVRARALGGHAVVTVADTG 494 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I E +F RF V NA G G+GL++V+ ++LH G ++ S++ TT Sbjct: 495 VGIAEAEMPRLFERFHRVENARSRSSEGSGIGLALVKELVSLHAGEITALSAENLGTTFT 554 Query: 786 CRIPS 790 R+PS Sbjct: 555 IRLPS 559 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 32/283 (11%) Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 SF D+R+ + G + +L D +T+ R E L + + Sbjct: 564 ASFGDQREQVHGIVGILLD---------------------LTERKRMEEELRDAKKMADA 602 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 + K F+ ++S+E+R+P+ I+G L + L++ Q +YV I+ S+ LL ++ Sbjct: 603 MSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLDTTQRKYVTRINESAKNLLGII 659 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 NDILD + ++AG + + L+D+L+ + I+ K E I + D + + D Sbjct: 660 NDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEFLMDIDPHIPLGLIGD 719 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 RL Q+ + NA+ F+ +G VI R + F+VK+ G I ++ +F Sbjct: 720 PLRLGQVMVNLCGNAVKFTHQGEIVISARVRQLNEQQVTLFFAVKDTGIGITQEKLAGLF 779 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 N F N+ Q G GLGLSI + + L GG +S + S+EG Sbjct: 780 NAFSQADNSITRQYGGTGLGLSISKQLVELMGGEIS-AHSEEG 821 >gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium] gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium] Length = 2112 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 23/253 (9%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + +++++ + E+A ++ A A + K+ F+ ++S+E+R+P+ I+GF+ L S Sbjct: 1552 SLIDISERIEREQADKQRQIA-EAATQAKSEFLANMSHEIRTPMNAIVGFSKLALES--- 1607 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL+ KQ +YV I ++ LL LV+D+LD + ++AG + L L++ L EV++ T Sbjct: 1608 SLDRKQHEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSETLTEVERLFRT 1667 Query: 661 KMHENNIRIKV----------ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++ N+ +++ DG L D R+ Q+ ++ NA+ F+ G VI Sbjct: 1668 EVRRRNLTLEIEDRTGEHPGFPEDGVL---TGDALRIQQVLVNLVGNAVKFTETGGIVIG 1724 Query: 711 KA--ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 A ++G + SV + G IP+ +F F RR G GLGL+I E Sbjct: 1725 AEVIAANHGQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGLGLTISERL 1784 Query: 765 INLHGGHVSISSS 777 ++L GG + ++S+ Sbjct: 1785 VDLMGGEIHVTST 1797 >gi|320012872|gb|ADW07722.1| integral membrane sensor signal transduction histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 594 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E +E + DE + V +++ELR+PL+NI G+ D + L S V + Sbjct: 361 ALNELSERRERTDEQRRVMVSDIAHELRTPLSNIRGWLDAAQDG----LADPDSSLVASL 416 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + +L ++++D+ LA DAG ++LN+ + L +L + + T + + Sbjct: 417 QEEAGLLQHIIDDLQVLAAADAGSLRLNFRKLNLRELAEQSLDAHQTAAQAGRVALTGYF 476 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 L + D RL Q+ +LSNA+ + +VI+ R G V + GS I PE Sbjct: 477 TDDL-TIEGDPVRLRQVLGNLLSNAIRHTPPNGSVIVSGYRGEGGVELHVADTGSGIQPE 535 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D+ + +F+RF R G GLGLSIV + HGG V + SS T R+P+ Sbjct: 536 DLPR-IFDRFWRAEQSRSRNTGGSGLGLSIVRHLVQAHGGEVHVVSSPGTETVFTVRLPT 594 >gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 637 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 20/231 (8%) Query: 560 EALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +AL +A+E +K+ F+ ++S+E+R+P+ +IG LLK S +L ++QSQ V S+S Sbjct: 83 KALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKS---NLTTEQSQRVNIASSS 139 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----I 672 + LL L+NDILD + ++A +++ + +L+ + QS+A E + + V + Sbjct: 140 ANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKV 199 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFI-FSVKNNG 727 S+ K+ S D R+ QI + +LSNA+ F+ +G + +L N + +V + G Sbjct: 200 SESKINS---DPSRIQQILTNLLSNAVKFTEQGELSVTAELLPTNNQNTALMHIAVADTG 256 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP +F+ F RR G GLGLSI + L GG +S+++ Sbjct: 257 IGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT 307 >gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 614 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 2/232 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ D +K+ FV S+ELR+PLT+I DLLK L+ ++ Q + L Sbjct: 384 LRELDRLKSEFVMTASHELRTPLTSIGMSIDLLKDKAGSKLSDRERQLLTVAQEDVQRLK 443 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVN++LDL+ ++AG +++++ + L + + + +AT+ + + + D L Sbjct: 444 ALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGLPEVR 503 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 D ++ + ++ NA+ + + V + AA+ G F SV ++G IP + +F+ Sbjct: 504 VDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIPLEFQTKIFD 562 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +FV R G GLGL+I + + HGG + + S+ TT +P E Sbjct: 563 KFVQVKSRRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVPIAE 614 >gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2] gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 570 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 143/258 (55%), Gaps = 12/258 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ ++ L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 317 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 375 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 376 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 433 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 K +++I DR RL Q+ +NA+ F+ KGS + ++ A+D Sbjct: 434 QEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 493 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F VK+ G IP D VF RFV N+ +G GLGL+I + GG + + Sbjct: 494 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 548 Query: 775 SSSDEGVTTINCRIPSKE 792 S + + RIP E Sbjct: 549 ESKEGEGSRFWFRIPRSE 566 >gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 778 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 12/230 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A +A+ K+ F+ ++S+E+R+P+ IIG T+LL+ + LN+ Q I Sbjct: 256 LREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQET---DLNAAQRDCTRVIQ 312 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L+ ++NDILD++ ++AG ++L + + + + + + D Sbjct: 313 DSAAALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEFAIELD 372 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729 +L + + D RL QI + ++SNA+ F+ +G + L+ D F+ +V++ G Sbjct: 373 PELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRFVIAVRDTGIG 432 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 + + C +F RF S A RR G GLGL+I + L GG + + S Sbjct: 433 LSTEECSRLFERF-SQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVES 481 >gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916] gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916] Length = 615 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + N KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNNEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + +L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + + +D+G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSGENVYIHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V+I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGKGTEFIIKLPA 585 >gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 927 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV---EYISASSTILLNLVN 625 K+ F+ ++S+ELR+PL IIG++++L+ + + Q +V + IS S+ LL L+N Sbjct: 425 KSEFLANMSHELRTPLNAIIGYSEMLEED---AEDMGQDDFVPDLQKISGSAKHLLELIN 481 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +LDL+ V+AG M+L + + ++ + ++ + + I + +G+ AD+ Sbjct: 482 AVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQT 541 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS 744 ++ Q +LSNA F+ G V L + D G + +FS+K+ G + + + VF F Sbjct: 542 KVRQSLYNLLSNACKFTESGE-VSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFTQ 600 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 R+ G GLGL+I + FI + GGH+S++S T +P + Sbjct: 601 ADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPRQ 649 >gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1026 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 7/241 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R E L E A K+ F+ ++S+E+R+P+ +IG T+LL K L Sbjct: 620 DITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKDEKLT 679 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q + VE I S LL+++N+ILDL ++A + +L + I + + ++ + Sbjct: 680 SAQRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLVSGSVG 739 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI 720 + I+ + + F+ D RL QI +L+NA+ F+ +G + + D+G + Sbjct: 740 DKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQGEIAVSVSNTNLDDGGYE 799 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK+ G IPED +F F R+ G GLGL+I + + G + + S Sbjct: 800 IHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNGRMWVES 859 Query: 777 S 777 + Sbjct: 860 A 860 >gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 769 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 132/243 (54%), Gaps = 12/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+ L +K E + +++ +K++F+ ++S+E+R+PL I+GF++LL + + + ++ Sbjct: 532 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAET---CHSEETREF 587 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ +LL LVNDILDL+ ++AG M YS ++ L + Q+ +++ + Sbjct: 588 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 647 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 I + + +++ RL Q+ + L+NA F+ +GS + R++G + F VK+ G Sbjct: 648 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 705 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785 I VF RF Q G GLGLSI ++ + NLHG S +G T TI Sbjct: 706 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763 Query: 786 CRI 788 C + Sbjct: 764 CAV 766 >gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 467 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 6/236 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 ++ + +A++++ ++++LR+PLT I G+ + ++ L Q ++ I Sbjct: 236 SQQIARANQLRRQMTADIAHDLRTPLTVIAGYIESMRDGVL----QPTPQRLDLIYQEIE 291 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L +VND+ L+ DAG + L+ LL + I +KV + L Sbjct: 292 RLQKMVNDLRMLSQADAGELNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLP 351 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + + D R++Q+ ++SNA+ ++S G + L+A +D V + G+ IP + + Sbjct: 352 AILVDEDRMMQVLDNLISNALRYTSAGGEITLRAKQDGKQVRLQVADTGTGIPSEELPRI 411 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F RF V + + G GLGL+IV + + GG VS S TTI P+ E Sbjct: 412 FERFHRVDPSRHSESGGSGLGLAIVRALVEAQGGKVSAESELGKGTTITTEFPALE 467 >gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] Length = 1474 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + +L+ K QYVE + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELREHE--TLSPKGVQYVELMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+L+ ++ EN + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNELVVSFQKEFRVLSEENEVSFTFQLPDAAIMIWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D+++L + I+SNA F+ G + V+ A D V++NG IP++ VF Sbjct: 1057 DKEKLSIVIRNIISNAFKFTPSGGSIHVVAGLAEDGEHCFLRVEDNGIGIPQNKLTEVFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 RF NA +G G+GL++ + +NLH G + + S EG T+ Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGVIR-AESPEGKGTV 1161 >gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 17/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L S V D RL QI + ++SNA+ F+ +G T++ +A D+ S+ + G + Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIHDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786 +++F F N+ Q G GLGL I + I GG + + S+ EG I+ Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508 Query: 787 RIP 789 R+P Sbjct: 509 RLP 511 >gi|261324700|ref|ZP_05963897.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300680|gb|EEY04177.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 532 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479 >gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1064 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 9/214 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ FV ++S+E+R+P+ ++G T+LL T++L + +Q + E S+ LL ++NDIL Sbjct: 415 KSLFVANMSHEIRTPMNGVLGMTELLLTTEL---DDEQRDFAETARHSAQALLGILNDIL 471 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + + L+ +LNE+ +A + E I + L + + D RL Sbjct: 472 DFSKIDAGKLDIETIDFDLHGVLNEISSLLALRAEEKGIEFICRVEPSLPARLRGDPGRL 531 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVS 744 Q+ ++ NA+ F+ G V+ D G+ + F ++++G IP + ++F+ F Sbjct: 532 RQVLLNLVGNAIKFTDHGEVVVSVGVEDRGEPLRVRFEIRDSGIGIPAETLPALFSPFTQ 591 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGLSI + + L GG + + S Sbjct: 592 AEGSTSRRFGGTGLGLSISKRLVELMGGEIGVRS 625 >gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 544 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 11/242 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E A K+ F+ ++S+ELR+PL IIG TDLL + G +Y+E Sbjct: 152 RELAMAKEEAELASRAKSQFLANMSHELRTPLNGIIGLTDLLLCAPAG---GDHREYLEM 208 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 + + LL +VN++LD+++++A + L + L + + EVK+ + + N+ V Sbjct: 209 VKQAGQELLTIVNNLLDMSSIEACRLVLRETPFSLRESVGEVKRILEIQARWKNLDFAVF 268 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNN 726 DG FV D RL QI S +L NA+ ++ KG S + A GD + F V++ Sbjct: 269 FDDGIPDLFVGDAGRLKQILSNLLVNAIKYTDKGGVSLRVSSAPCTAGDTVRLCFYVQDT 328 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + +++F FV ++ G GLGL+I GG V S EG + Sbjct: 329 GVGIDPEKRETIFEPFVLGESFMTKKSGGAGLGLAISRELARKMGGDVHASRCAEGGSLF 388 Query: 785 NC 786 C Sbjct: 389 EC 390 >gi|86136730|ref|ZP_01055308.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193] gi|85826054|gb|EAQ46251.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193] Length = 518 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 161/381 (42%), Gaps = 18/381 (4%) Query: 171 LDGIYS-ELAETTL--KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227 +DGI +L +TL + K L ++ + + VW + G + W N++Y Sbjct: 123 IDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSDEGAVTWTNLAYDD--- 179 Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287 + QK G + F E + + + K ++ + Y I G Sbjct: 180 ----LSQKLRGRDAE-FSEPLFDNLDEPKSSGKAERISIPMPDTTKRLWYNISTTETEAG 234 Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343 A+DV+ E+ + + + L++ +AIFD+NR L N ++L + Sbjct: 235 WLCHAVDVNAVVDAEVAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPA 294 Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH 401 FL+ P+ + LR +PE N+ +W+ I + +++ +++TW LP+G Sbjct: 295 GFLSARPTLMTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVYS 354 Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461 V +P G ++FE++T +V L ++ + +++ +D + E +AVF DG + SN Sbjct: 355 VSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEMGQSIMDQMGEAIAVFANDGTMTFSNE 414 Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521 + +LWK + + I + A + W + D R ++L Sbjct: 415 TYHALWKMDPDASFAKVSIMDAARIWQDTCTATPAWGEIRDFVAG-SDGRTPWWTQVQLR 473 Query: 522 SDSVLEYSIIPLPNAQTMLTF 542 + L + + N TM++F Sbjct: 474 DGTPLLCKVTAIQNGATMVSF 494 >gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 610 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S KQ +Y I S LL LVN + Sbjct: 329 KGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLASEKQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G ++ T+ + + + + +G VADR+ + Sbjct: 389 LDNSRLETGNYSIDPQTLAFREAAEMCTAVMLPLAEKKGVAFCHRVGNGIGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI + NA+ F+ G V + AAR + FSV + G I PEDM + + F Sbjct: 449 QQILLNLAGNAVKFTQSGGCVTIDAARVMAEGRAMLEFSVSDTGIGIEPEDMQRIGTPFV 508 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R +N R Q G GLGLS+V+ + LH G + + S T + R+P Sbjct: 509 RANNNYARAQ-EGSGLGLSVVKGLVELHQGTMQLKSCPGEGTVVTVRLP 556 >gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] Length = 917 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731 L + V D RL QI + ++SNA+ F+ +G+ V I D+ SV++ G + Sbjct: 391 PL-ALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 450 SQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1192 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E ++IP+ + ML + D R E L E + + K+ F+ +S+E+RS Sbjct: 451 IELTLIPVQLGEEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMSHEIRS 510 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G DLL S+L N +Q Y + T LL+ +NDILD + ++AG M L Sbjct: 511 PLNAVLGSVDLLLDSRL---NKEQRIYANTAKEAGTALLSTINDILDFSKIEAGQMLLEK 567 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701 S+ L+ +V Q ++ K + I + + + S + D QRL Q+ ++ NA+ F Sbjct: 568 SSFSAAKLVTQVLQILSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQNLVDNAIKF 627 Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 SS G + L++ + +V + G I E+ ++F F V + H G G Sbjct: 628 SSGGCIAVEMWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHNTNYSGTG 687 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I G +++ S Sbjct: 688 LGLAICAELITRMEGSIAVRS 708 >gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1] Length = 1522 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE L EA KA++ K++F+ ++S+ELR+P+ I+G LL+ + L+ Sbjct: 746 DITQQREAENILKTAREAAEKANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 802 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ+ Y A++ LL L+NDILD + +++G M+L ++ +L ++ +++ + Sbjct: 803 RKQADYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHIMLRDLAVILSSYLK 862 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720 + + D L FV D RL QI + + NA+ F+ G V+ A+D+ Sbjct: 863 VKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVIAQDSHQVT 922 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +S+F+ F RR G GLGL I + F+ L GG +++ S Sbjct: 923 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLES 982 >gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC 15579] gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC 15579] Length = 617 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQ 608 E+ + NE+ R+ +++ F+ ++S+EL++PL I +L K + NS K+ Q Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDA-NSYDKKEQ 397 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ NI Sbjct: 398 YIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNIN 457 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I +D + D ++ +I +LSNA+ F+ G + + SVK+ G Sbjct: 458 IIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIKDCKDSITISVKDTGI 517 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D +++F RFV R + G G+GL +V+SF+N+H G++ I S Sbjct: 518 GIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGNIDIQS 567 >gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] Length = 1153 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N Q L + R + AL E A++ K +V +++ELR+PL +I+G+ +L Sbjct: 667 NRQNQLLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSILGYAQIL 726 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K G L++ + V I S L+ L++ +LDLA ++AG ++L + + L L+E+ Sbjct: 727 L--KDGVLSAAPREAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPLPAFLDEL 784 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + + + G++ ++V AD +RL QI +LSNA+ F+ +G TV L Sbjct: 785 VRMVQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDEG-TVTLHVD 843 Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769 F V + G I P+D + +F F A G+RR G GLGL+I +L G Sbjct: 844 CRREVVRFDVVDTGIGIAPQDQ-QRIFMPFERGAA-GRRRGEPGTGLGLTITALLTSLMG 901 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S+ +T + R+ +E Sbjct: 902 GELGLVSAPGRGSTFSVRLYLRE 924 >gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 801 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F ++T + L + EA A++ K F+ +S+E+R+P+ ++G ++L+ S Sbjct: 376 LVIFQDLTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVLQES- 434 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ +Q + + + + LL L+N ILDL+ +DAG ++L + L++L+ EV + Sbjct: 435 --TLDQEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKEVVGLV 492 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A E N+ + D + ++ AD RL QI +L NA+ F+ KGS I + RD Sbjct: 493 AVLASEKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEKGSVNITLSMRDPQ 552 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 +++ G + ++F F RR G GLGL++ + L G + + Sbjct: 553 QLALVIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMHGQIRMD 612 Query: 776 S 776 S Sbjct: 613 S 613 >gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 761 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 362 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 419 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L + L+ +L E ++ Sbjct: 420 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAA 477 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + + ++G VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 478 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 536 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ DEG Sbjct: 537 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 596 Query: 781 VTTINCR 787 CR Sbjct: 597 -----CR 598 >gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1573 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 15/226 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D K+ F+ +++ELR+PL + +L+ S +G + + + L Sbjct: 1202 LQEQDRRKDEFLATLAHELRNPLAPVRNGVQILRLSGVGEAAGRT---LNMMDRQLGHLT 1258 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDGKL 677 +LV+D++D+A V +G + L + L +++ +Q++ HE +R V ++ L Sbjct: 1259 HLVDDLMDVARVSSGKVVLRNDRVSLKAVVDAAVETSRQAVEAAGHEFVLR--VAAEPLL 1316 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 AD RL+Q+ + +L+NA ++ +G ++L A RD GD + +V + G IP DM Sbjct: 1317 --LSADHTRLVQVLANLLNNAAKYTPQGGRIVLSAQRDGGDAVVTVSDTGVGIPADMLPK 1374 Query: 738 VFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VF F ++ R Q G+G+GL++V+ + +HGG V S G Sbjct: 1375 VFELFAQVGTSIERSQ-GGLGIGLTLVKRLVEMHGGTVRAESPGPG 1419 >gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 799 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 3/225 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ D +K+ FV VS+ELR+PLT+I G L+ G L + V S + L+ Sbjct: 302 LRRIDRMKSEFVSTVSHELRTPLTSIRGSLGLIAGGVAGELPAMAKSLVGIASNNCERLI 361 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDILD +++G M + L LL + + ++N+++ + + Sbjct: 362 RLINDILDSEKIESGKMHFELQQVELQPLLAQALAANEGFAGQHNVKLALDAPADAVRVS 421 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ + +LSNA+ FS S V ++ R G V ++G I E+ K +F + Sbjct: 422 VDSDRLTQVVTNLLSNAVKFSPPASCVHIRLLRSGGRVRVEVADSGPGILEEFRKRIFQK 481 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 F + Q+ G GLGL+I + + GG + ++ GV T+ Sbjct: 482 FSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMGFTTK-AGVGTV 525 >gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 467 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +E + K+D++KN F+ +S+ELR+PLT+I G+ + L +L + + + I + Sbjct: 234 SEEILKSDKMKNDFISSISHELRTPLTSIKGWGETLFGEELQD-REEVKEGLNIICKETD 292 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 ++ LV ++LD + +G +KLN I +N LL EV Q A ++ + I + + + Sbjct: 293 RMIGLVEELLDFSRFQSGRIKLNLEKININSLLTEVIQQYAIRVRQKKIEMPYQFNDSVP 352 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKS 737 DR RL Q+F +L NA+ F+ V + G N+G I ED+ + Sbjct: 353 EITGDRNRLKQVFINLLDNAVKFTPFCGKVQISTEYSEGTIKIDFVNSGEGIRSEDLPRV 412 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +NA+R G GLGL+IV+ INLH G + I S Sbjct: 413 TEKFYKANANRP---GSGLGLAIVKEIINLHQGDLHIES 448 >gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1160 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 5/245 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L E+ E L+++ + K+ F+ ++S+ELR+PL + + + LL + +L+ +Q ++ Sbjct: 469 AQIQLQERAEELQRSSKYKSEFLANMSHELRTPLNSSLILSKLLSENPQQNLSEEQVKFA 528 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--R 668 E I ++ LLNL+NDILD++ V+AG +++ + L+ ++ + + Sbjct: 529 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENTSVQRLVEGLRDMFEPLAADKGLGFE 588 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++V+ D DRQRL Q+ +LSNA+ F+ +G+ + A + F V+++G Sbjct: 589 VQVLPDAP-AMLYTDRQRLEQVIKNLLSNAVKFTEQGTVSLSVAGQPGSGIAFMVRDSGI 647 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +S+F F RR G GLGLSI L GG + +SS + Sbjct: 648 GIAADQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSICVSSEPGQGSVFTL 707 Query: 787 RIPSK 791 +P + Sbjct: 708 VMPER 712 >gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%) Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575 G + LL L S +PL T + +VT+ L EA + + K+ F+ + Sbjct: 70 GRVALLRRESLHESGLPL----TRVVLRDVTEHRAVLAELAAAREAAKAGERAKSHFLAN 125 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +++E+R+P+ I+G T+L +K L KQ +Y+E S+ LL ++NDI+D A ++ Sbjct: 126 ITHEIRTPMIGILGMTELTLATK---LTEKQREYLEMARHSAQSLLTVLNDIVDYARIEV 182 Query: 636 GIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKVISDGKLGS----FVADRQRLL 688 G ++L + L + E V + +A K H VI +G+ V D RL Sbjct: 183 GALELARTPFDLYATVEETISVFRPLAAKKH------LVIGYQFIGAVPQVLVGDASRLR 236 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRF 742 QI ++ NA+ F+ GS V+ D+G +V++ G IP D +++F+ F Sbjct: 237 QILINLVGNAVKFTDAGSVVLTITRADDGSERKAAQLHLAVRDTGIGIPRDKIQAIFDSF 296 Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 VS A R Q G GLGL+IV + + GG S+ S+EG +I Sbjct: 297 TQADVSAARRYQ--GAGLGLAIVRHLVEMQGGLYSV-ESEEGQGSI 339 >gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1101 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612 AL E +A++ K+ F+ +S+E+R+P+ I+G T++ L+T L +Q Y++ Sbjct: 580 ALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRTE----LTEEQRDYLDT 635 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 +S S+ LLN++NDILD + ++A M+L L++LL +++ E +R+ + Sbjct: 636 VSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLGAREKGLRLALD 695 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNN 726 I G D ++ Q+ ++ NA+ F++ GS + A + G +F V + Sbjct: 696 IFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGLAAGAVGEPGRLVFEVADT 755 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I DM + +F+ F N+ Q G GLGL+I L GG + +S+ Sbjct: 756 GIGIRPDMLEVIFDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAAST 808 >gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 846 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 10/222 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R + K F+ +S+E+R+PL +IG +LL+ + + +Q +Y+ I ++ L Sbjct: 343 RAESQAKGLFLARMSHEIRTPLNGVIGLAELLRET---DPSPRQQEYISLIDSAGRTLTA 399 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681 L+ND+LD A ++AG ++L L LL E Q +N + + D S V Sbjct: 400 LINDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSDVV 459 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737 D RL QI ++ NA+ F+ G V+ R +G F F+V + G + +D Sbjct: 460 GDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPLFTFAVTDTGIGLTQDEQTQ 519 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +F RF + RR G GLGLSI + L GG + + S+ Sbjct: 520 LFQRFTQASANTARRYGGTGLGLSISRELVGLMGGEIHVHSA 561 >gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1303 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 136/260 (52%), Gaps = 12/260 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596 +++ F +++ + E+ L A +A+ K+ F+ ++S+E+R+P+ I+G + L ++T Sbjct: 534 SVVVFQDISVRKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRT 593 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 S + +Q Y++ I ++ LL+++NDILD A V+AG M++ L+++L+ + Sbjct: 594 SN----DPRQRAYLQKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVLDTLAT 649 Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714 + K E + + L V D RL QI + NA+ F+ +GS V+ ++ + Sbjct: 650 LTSVKADEKGLALIFRRHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQGSVVVNVEKVQ 709 Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 GD I FSV++ G + E + +F F RR G GLGL+I + +NL Sbjct: 710 QQGDQIVLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMA 769 Query: 770 GHVSISSSDEGVTTINCRIP 789 G +S+ S+ E + +P Sbjct: 770 GELSVQSTPEVGSCFTFTVP 789 >gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 795 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 2/236 (0%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N L +A +K+ F+ VS+ELR+P+ IIGF++LL + +NS+Q V+ I + Sbjct: 559 QNLQLLEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINSQQIDMVQRILKNG 618 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+N+ILDL+ ++AG +L L +L+ +E + + V Sbjct: 619 KNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLDN 678 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 V D+ RL Q+ +LSNA+ F+ +GS I + + +++ G I E Sbjct: 679 PCIVNDKSRLRQVLVNLLSNAVKFTERGSIYIHVSELSADKLLIEIRDTGIGIAETQIPH 738 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F +F V + + G GLGL+I S +NL G + + S ++ +P + Sbjct: 739 IFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELPRQ 794 >gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 622 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + + F D RLLQ+ + +++NA+ + +GS + A + + F V Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYAIQPDDQLRFYV 555 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I ++ K VF+RFV N + G+GLGL+I + + GG + ++S + Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 613 EFSFILPSHE 622 >gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1102 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 12/222 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ ++S+E+R+P+ +IG +LL ++L NS+Q++YVE I++S+ LL ++ Sbjct: 425 ANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRL---NSEQTEYVERINSSAQALLRVI 481 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + +DA + L L + + V I+ E + + + ++ D Sbjct: 482 NDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPLWLKGD 541 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738 RL QI + NA+ F+ KG V+++ + D+ D F V+++G IP D+ K++ Sbjct: 542 PGRLRQILMNLSGNAVKFTEKGE-VVIRVSLDSEDEETAVIRFEVRDSGIGIPPDVQKTL 600 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F F R+ G GLGL+I + L GG + ++S + Sbjct: 601 FTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEE 642 >gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 521 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 4/225 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+ELR+PL ++GF LL++ + + Q + ++ I + LL ++ D+L Sbjct: 297 KTEFLSRMSHELRTPLNAVLGFAQLLESDPVEPPSESQQRRIKLIREAGEHLLQMIGDLL 356 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL +++G ++L + + L L E +A + + ++D G+ V AD RL Sbjct: 357 DLTRIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTL-ALADSAPGARVRADGTRL 415 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFV-SN 745 Q+ +L+NA+ ++ G V L+ A G + +V + G I D + +F F Sbjct: 416 RQVLLNLLTNAIKYNRAGGRVELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYRGR 475 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 A RG+ G G+GL++ + + L GG + + S ++ +P+ Sbjct: 476 AVRGRVEGTGIGLALTQDLVVLMGGRIEVDSEPGRGSSFTVTLPA 520 >gi|317122192|ref|YP_004102195.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] gi|315592172|gb|ADU51468.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter marianensis DSM 12885] Length = 490 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 5/221 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E LR++ ++ S + +S+ELR+P+T I G + L+ L +++ I A + Sbjct: 243 EELRRSQTLRRSMLATISHELRTPVTVIRGLGEALRDG-LVEAGPGAARHAGQIVAEAER 301 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L++D+ LA ++ G + L + L E ++ T + E D LG Sbjct: 302 LGRLIDDLFQLAQIETGQLDLRFGRFAAGPWLEERATALETLVRERGAHWAARIDPSLGG 361 Query: 680 --FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK 736 AD RL Q+ ++ NA + G V L AA G V ++G I P D+ + Sbjct: 362 VWLEADPHRLAQVLGNLVDNAARHAGPGGHVTLTAAAVAGGVRVEVADDGPGIDPADLPR 421 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 VF F + RG GLGLSIV + + HGG V ++S+ Sbjct: 422 -VFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVASA 461 >gi|261218576|ref|ZP_05932857.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261221784|ref|ZP_05936065.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315201|ref|ZP_05954398.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317242|ref|ZP_05956439.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261320575|ref|ZP_05959772.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261751910|ref|ZP_05995619.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754568|ref|ZP_05998277.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|265988281|ref|ZP_06100838.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265997748|ref|ZP_06110305.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|260920368|gb|EEX87021.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|260923665|gb|EEX90233.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261293265|gb|EEX96761.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261296465|gb|EEX99961.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304227|gb|EEY07724.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261741663|gb|EEY29589.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744321|gb|EEY32247.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262552216|gb|EEZ08206.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264660478|gb|EEZ30739.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 532 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479 >gi|260172697|ref|ZP_05759109.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315920990|ref|ZP_07917230.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694865|gb|EFS31700.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 701 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 16/236 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L EKNE L +AD++K F+Q++S+E+R+PL I+GF+ LL L + + Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + ++ + +S +L LVNDILDL+ +++G +N ++ N++ + ++ + E Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576 Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +K+ ++ D QRL Q+ L+NA + KG + + ++ D I F Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEHPDRITF 633 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP D SVF RF Q G GLGL+I + G V + S Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687 >gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 423 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P P A +L + ++T+ + + AL + +++AD++KN+F+ ++S+E+R+PL I+G Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F L+ + S +Q +Y I+ + +LL L+NDILDL+ +++G + N S + L D Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706 + E + KM + + ++ + V D R+ Q+ +LSNA+ F+SKG Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + D F+ SV + G I E+ +SVF RFV Q G GLGL I + + Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376 Query: 766 NLHGGHVSISS 776 GG + + S Sbjct: 377 EQLGGEIGVRS 387 >gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas flavigena DSM 20109] Length = 589 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A +K+ FV VS+ELR+PLT+++G+ +LL L +Q +Y+ I ++ L Sbjct: 358 REAARLKDQFVGLVSHELRTPLTSVLGYVELLLDGTE-ELTDEQREYLGIIDRNARRQLR 416 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV+D+L A VDAG ++ + + + + + + + + D + A Sbjct: 417 LVSDLLLSAQVDAGTFAISPTDV--DAAVVARASLASAAPAADAAGVTLAGDLRPAPLRA 474 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q ++SNA+ F+ G TV + D+G + +V + G IP D ++ R Sbjct: 475 DPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDGGAVVAVSDTGIGIPPDELANLTER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F S A R GVGLGLSI + + HGG V I+S+ TT +P++ Sbjct: 535 FYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIASTVGEGTTFTLVLPAR 586 >gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 871 Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 116/483 (24%), Positives = 218/483 (45%), Gaps = 58/483 (12%) Query: 345 FLATNPSNDELLEFL-------RSANKL-----PEQLNWKTWKENIFSVYKSSE---THK 389 F NP+ +LL F R A+ L P+ + + IF V +S E + Sbjct: 271 FTFLNPAARQLLGFASEEAALGREAHALTHHSRPDGTPYPLEECPIFRVLRSGEPLEAWQ 330 Query: 390 DTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDH 442 D + +G+ V+V + P GG + F++++ + +E + + ++++ +DH Sbjct: 331 DYFWRTDGRGFDVLVYAAPLRDVEGGITGIVLSFQDISRRRRIERERDQMLEI----LDH 386 Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-------GTHIR-NIAATCSRYYNES 494 + F PD + +N L+ ++ G R + A R+ + Sbjct: 387 HPHLIQRFLPDTTLLYANRMVAELFGIPPPQMDGRRWIEWLGPEAREQLEAFLCRFTRAA 446 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 + A++ + ++R+ +Q T + D E +I + +++T+ V AERA Sbjct: 447 PVGTVQLAVLAATGEQRR-VQWTCQAFFD---EDGLI----SHFQAVGIDITEQVAAERA 498 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +AD + +F+ VS++LR+PL I GFTDLL+ ++ L +Q +Y+ Sbjct: 499 RA-------QADRDRRTFLAAVSHDLRTPLNAIYGFTDLLQATE---LTPQQREYLGLCR 548 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++S LL L++ +LDL+ +++G + L+ L +++ + E +R+ V Sbjct: 549 SASEKLLALIDTLLDLSRMESGRLTLHDEPFELAEVVERQVAVLRAVAEEAGLRLTVREA 608 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 +V D R Q+ ++SNA+ F+ G V+ A +G +V + G I PE Sbjct: 609 PGTPQWVRGDATRFGQVVHNLISNAIQFTEHGEVVLEVAPEGSGWLYVAVHDTGVGIAPE 668 Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINCRIP 789 D + +F F N ++ G GLGL I + + L GG + ++S +G T R+P Sbjct: 669 DR-EHIFKAFAQGNPSFRRQPGNGLGLRICQELVRLMGGRLEMTSELGKGSTFYFTARLP 727 Query: 790 SKE 792 E Sbjct: 728 RVE 730 >gi|323704635|ref|ZP_08116213.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536097|gb|EGB25870.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 610 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 132/258 (51%), Gaps = 23/258 (8%) Query: 523 DSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 D + +I P+ N ++ +L F N+T+ ++ D+ K+ F+ +S Sbjct: 345 DKYYDVTITPIKNYKSEISDILLVFHNITE--------------FKELDQAKDDFISIIS 390 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E ++PLT+I+ T ++ K+G +N KQ + I S L LVN++++L +++G Sbjct: 391 HEFKTPLTSIMMGTSMILEEKIGVINDKQRSTLVAIEEESEKLTELVNELIELTKIESGK 450 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 N+ + + + + +E + + D + AD +++ + + +++N Sbjct: 451 EMYNFKCCSIFGIAQNTVKPLYNIANEKGVNLTNTIDEDMPGVYADPEKITWVLNNLITN 510 Query: 698 AMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 A+ ++ G + + A+ D GDF+ SVK+ G+ IP++ +F++F V N + +G Sbjct: 511 ALKYTDAGDDITISASVD-GDFMQISVKDTGAGIPKEYKDKIFDKFFHVQNDDEFEIKGT 569 Query: 755 GLGLSIVESFINLHGGHV 772 GLGL++V+ + HGG V Sbjct: 570 GLGLAVVKEIVEAHGGKV 587 >gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 660 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 20/242 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615 +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I++ Sbjct: 271 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPNYKGLSVIAS 325 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670 S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + + Sbjct: 326 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILELH 382 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V L + D RL Q+ +LSNA+ F+ + + RD+G + SV ++G I Sbjct: 383 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGI 440 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R Sbjct: 441 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 500 Query: 788 IP 789 +P Sbjct: 501 LP 502 >gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 508 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 6/241 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++T+ + E L +A AD ++ F+ +S+E+R+P+ +IGFT LL+ + Sbjct: 106 ILLLRDITERKQDEHRLRAAKDAAVAADRAQSRFLAMMSHEIRTPMNGVIGFTQLLRDTP 165 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L N +Q +YV+ I+ S LL +++DILD + V AG ++L + L L+ + Q + Sbjct: 166 L---NPRQMEYVDLITRSGQSLLVIIDDILDYSKVSAGHLQLERAPCELRRLIEQHIQLL 222 Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 T + NI I + D + S + D R+ QI S ++SNA+ F+ G I Sbjct: 223 HTGARQKNITIDLHIDPLVPSLIIGDAVRIGQIVSNLVSNAIKFTHHGGVHIHLVPDGPR 282 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 V + G IP + + +F F RR G GLGL I L GG +++S Sbjct: 283 CLALHVTDTGIGIPPEAHRRIFEPFSQADGSTTRRYGGTGLGLPITRLLCTLMGGTLTLS 342 Query: 776 S 776 S Sbjct: 343 S 343 >gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 560 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 7/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + + K+ F+ +S+ELR+PLT+++ FTDLL L ++ Q ++YI Sbjct: 309 LEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKEL-KQERQNLKYIK 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A+S LL L+N+ILDLA ++AG ++L + + D++ + IA + I ++ D Sbjct: 368 ANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWEISLD 427 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIP 731 ++ AD ++L ++ ++ NA+ F+ V + RDN + V + G IP Sbjct: 428 PEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNW-LMIRVIDTGIGIP 486 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F RF R+ G GLGL++ + ++LH G + + S +T +P Sbjct: 487 PEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVVLLP 546 >gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 814 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 135/258 (52%), Gaps = 9/258 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T+ +++T+ + L + +A + + +F+ ++S+E+R+P+ +I+G T+LL + Sbjct: 288 TLGIHLDITEQKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDT 347 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L+ +Q +YV + S+ +L LV+D+LD++ ++ G M+ ++ + ++ Sbjct: 348 ---YLSEEQLEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKT 404 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714 ++ + I+ + +S F +D + QI +++NA F+ +G+ L A+ Sbjct: 405 FEFRLSQRPIQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEGTISCLAEAKFI 464 Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 D +I F VK+ G IP D +F RF A++ QR G GLGL I + + L GG+ Sbjct: 465 DQQQWIEFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGN 524 Query: 772 VSISSSDEGVTTINCRIP 789 + + S+ TT N +P Sbjct: 525 IKVQSTPGVGTTFNILLP 542 >gi|332560839|ref|ZP_08415157.1| multi-sensor signal transduction histidine kinase [Rhodobacter sphaeroides WS8N] gi|332274637|gb|EGJ19953.1| multi-sensor signal transduction histidine kinase [Rhodobacter sphaeroides WS8N] Length = 699 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + L A+ K++F+ +S+ELR+PLT IIG+ +LL+ S+ L+ ++ Q V+ IS Sbjct: 452 LATMGDKLDAANRAKSNFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673 + L+ LV+ +L+L+ ++ ++L S++ L L+ E + +++I+ Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 + L S V+D L +I ++LSNA+ ++ G V + + D + S+++ G IP Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631 Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D VF F H G G G+G++I + + G +S+ S+ T RIP Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689 >gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. At-9b] gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. At-9b] Length = 950 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ VR E++L E +A +A K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 443 VLVDVSARVRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 499 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L V ++ SS++LL +++DILD + +++ +K+ +++N + + + Sbjct: 500 ALPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNYLS 559 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + V + + + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 560 LVVRKRLALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYEHEGYL 618 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V++ G IP +F+ F QR +G GLGL+I E IN+ G + + S Sbjct: 619 AFRVRDTGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 679 PGMGSQFVVRIP 690 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKAD 566 ++R + G +L D +L P + +T+ +++ R AE AL + E A+ Sbjct: 533 EDRNPISGRWQLNHDRIL-----PWFDGKTVRVQISLDIGQRKQAEEALKQSKEEAESAN 587 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ ++S+E+R+PL I+G LLKT+ N +Q +Y+ S+ L L++D Sbjct: 588 KAKSVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAIRSTNRLTRLLSD 644 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685 ILD++ ++AG M++ S + + + + + + + ++ D L V D Sbjct: 645 ILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNILPMLLVGDEA 704 Query: 686 RLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 RL QI ++ NA+ F+ KG ++++ +++ + + +V + G I E+ K +F Sbjct: 705 RLRQILFNLVGNAIKFTEKGKIRIDASLLPRSSDSSVRVLVTVSDTGIGISEEQLKDIFE 764 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV RR G GLGLSIV + L G +SI S+ TT +P K Sbjct: 765 PFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLPFK 817 >gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis E264] gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 952 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S+ Sbjct: 442 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 501 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+++QS+ ++ + + S LL+++NDILDL+ V++G M L + LL E+ + Sbjct: 502 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 558 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A ++ + + +G + D R+ QI S ++ NA+ F+ +G + KAA Sbjct: 559 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 618 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + V + G I D ++F+ + RR G GLGL + + + GG Sbjct: 619 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 678 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + S + TT+ +P +E Sbjct: 679 IEVDSLPDFGTTVTVVLPLRE 699 >gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 754 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 542 FVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 + ++TD E+ L EK E L +A++ K+ F+ ++S+E+R+P+ I LL Sbjct: 346 YKDITDRKLIEKDLREKCEQLELLKQKAEEANKAKSIFLANISHEIRTPMNGITAAIQLL 405 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K L +N KQ +Y+ ++ S+ +L L+N++LD++ +++G ++N L + +N + Sbjct: 406 K---LEDINEKQKKYIRILNDSANTVLRLINNLLDMSKIESGTFRINREPFNLKETINNI 462 Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVI 709 S+ + + + D + + D RL +I S ++SNA+ F+ G + Sbjct: 463 YNSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNLISNAVKFTDDGYISFRVSM 522 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + D+ F++K++G I ++ +FN F ++ G GLGLSI + F NL Sbjct: 523 ISEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSMKKYMGTGLGLSISKQFANL 582 Query: 768 HGGHVSISSS 777 G +S SS Sbjct: 583 MNGEISFESS 592 >gi|306845191|ref|ZP_07477767.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306274350|gb|EFM56157.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 609 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 1323 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 127/244 (52%), Gaps = 4/244 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608 +AE L A A+E+K F+ +S+E+R+PL IIGF++++ +LG + N + Sbjct: 1072 KAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERLGRIDNDRYRG 1131 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+ I+ S +L+LVND+LD+ ++AG M++++ + LN ++E + + + + I Sbjct: 1132 YLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAILQAEANADRII 1191 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727 I+ + VAD++ + QI ++SN++ F+ G VI+ D+G+ + V++ G Sbjct: 1192 IRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSGEVVLRVRDTG 1251 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + + F ++A +G GLGL + ++ + + I S+ + T + Sbjct: 1252 VGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIESTPDEGTLVE 1311 Query: 786 CRIP 789 P Sbjct: 1312 IHFP 1315 >gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220] gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220] Length = 928 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 419 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 478 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + + V ++ SS++LL +++DILD + +++ +K+ ++++ + + Sbjct: 479 E---LPNGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 535 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + D + + D RL Q+ S +LSNA+ F+ G V+ + + Sbjct: 536 YLPLVVRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCD 593 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 594 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 653 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 654 VDSEPGMGSQFTLRIP 669 >gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1228 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 14/266 (5%) Query: 534 PNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P A LT+ +VTD + E L E A K+ F+ ++S+E+R+PL I+G Sbjct: 806 PMADKGLTYAIARDVTDRKKYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGILGM 865 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 L++ ++ L+ +Q YV +S L L++DILD++ ++A + + L++ Sbjct: 866 LQLMQQTR---LDHEQDDYVGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNLHES 922 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG---- 705 LN V+ +++ I + K+ + + D RL Q+ S ++ NA+ F+S G Sbjct: 923 LNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSGTVTV 982 Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 +T + + +FS+K+ G IP+D +F F V ++ Q +G GLGLSI + Sbjct: 983 EATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGLSITK 1042 Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788 + L GG + I S TT++ I Sbjct: 1043 RLVALMGGTLCIESRVGVGTTVHLSI 1068 >gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 977 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 L + E A++ K++F+ ++S+ELR+PL IIG+++++ + ++ I Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + LL L+N ILDL+ ++AG M+L + L +L+N VK I + +N ++ V Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G AD +L Q +LSNA F+ +G T+ L+ A +F V ++G + + Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 642 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F F R+ G GLGLSI FI + GG +++ S +T +P + Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 702 >gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI ++ + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 496 DGNIELEELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 674 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 20/242 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615 +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Q Y + I++ Sbjct: 285 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPNYKGLSVIAS 339 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670 S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + + Sbjct: 340 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILELH 396 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V L + D RL Q+ +LSNA+ F+ + + RD+G + SV ++G I Sbjct: 397 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGI 454 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R Sbjct: 455 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 514 Query: 788 IP 789 +P Sbjct: 515 LP 516 >gi|161528428|ref|YP_001582254.1| histidine kinase [Nitrosopumilus maritimus SCM1] gi|160339729|gb|ABX12816.1| histidine kinase [Nitrosopumilus maritimus SCM1] Length = 505 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 147/300 (49%), Gaps = 12/300 (4%) Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAER 553 D WD T F E+ L+ L S + +IIP + T+ F+ + R + Sbjct: 213 DAWDE----PTEFS-EKTLLKQVKNLKSLYFMYENIIPSIIGLATLAGFIVTMLAGRVSK 267 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 T+ E L + D+ K+ V VS+E+++PLT II LL T K G L KQ ++ I Sbjct: 268 GETKIAE-LEEIDKQKDELVSMVSHEIKNPLTPIILACQLLLTEKEGPLTQKQKHRIKQI 326 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +S + L++D+ D+ T+D M L + ++ LL ++ ++ M E+ + + Sbjct: 327 LVNSNQVTALLSDLSDIKTLDRNDMNLRKEDVNVDILLKKIIPNLK-DMVESRGAVLELK 385 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 K + D R+ Q+ + I+ NA+DF ++ G VI D+G + S+++NG IP Sbjct: 386 VKKSKTISCDAARISQVVTNIVKNAVDFVPTTNGKIVISSDVTDDGQTLISIEDNGIGIP 445 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ ++VF +F + +G GLGL+I + + HGG + ++ G N +P Sbjct: 446 EEHHETVFEKFHQLDTPKDISHQGTGLGLAICKGIVESHGGKIWVAKDYTGGAKFNILLP 505 >gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1816 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 9/248 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A + T +++T+ + ++ LT + A + K+ F+ +S+ELR+PL +IGF++LL+ Sbjct: 1404 AYVLKTMLDITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELLR 1463 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 L S+Q++Y++ I+ + LL L+NDILDL+ ++AG + + L E+ Sbjct: 1464 NDTLP--RSEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIY 1521 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714 + E + + D +L D RL QI + NAM F+ GS I+ R Sbjct: 1522 SIFRLQAAEKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRP 1581 Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR--RGVGLGLSIVESFINLH 768 + G V + G I E K++F FV + RG +G GLGL+I I Sbjct: 1582 ESDEAGTLTIRVIDTGIGISEQGQKTIFEPFVQDHEVRGSHAYQGTGLGLTISSRLIGQM 1641 Query: 769 GGHVSISS 776 GG +++ S Sbjct: 1642 GGRMALDS 1649 >gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1231 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 31/244 (12%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ A+ K+ F+ ++S+ELR+PL I+GF+ L+ + SL+++ QY+ I+ S Sbjct: 738 ESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDR--SLSTEYIQYLNIINRSGEH 795 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L+NDIL+++ ++AG M L + L +LL+ ++ + K +++ D + Sbjct: 796 LLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKALKLTFQRDKTVPK 855 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA---RDNGD---------------- 718 FV D+ +L QI ++ NA+ F+ KG+ ++ +K A R N + Sbjct: 856 FVKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNEQKENTNIPSSFFLLPS 915 Query: 719 ---FIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F V++ G I PED K F + + GQ G GLGL I + F+ L GG + Sbjct: 916 SFFLQFEVEDTGPGIAPEDFDKLFEAFGQTATGLKSGQ--GTGLGLPISQKFVQLMGGEI 973 Query: 773 SISS 776 ++SS Sbjct: 974 TVSS 977 >gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Citrobacter koseri ATCC BAA-895] gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895] Length = 948 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 439 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 499 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G V+ + + Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCD 613 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ V++ G IP +F+ F QR +G GLGL+I E I++ G +S Sbjct: 614 GDYLSIQVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673 Query: 774 ISSSDEGVTTINCRIP 789 + S + RIP Sbjct: 674 VDSEPGMGSQFTLRIP 689 >gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 1326 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 17/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L +A K+ F+ ++S+ELR+PL + + LL + G+L +Q Sbjct: 860 QARQELEERAHELSQASTYKSDFLANMSHELRTPLNSALILAKLLADNMEGNLTPQQVDL 919 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ T LL L+ND+LDL+ V+AG M L + L++L V+ + + Sbjct: 920 AKTIHSAGTDLLQLINDVLDLSKVEAGHMSLLPEDVELSELTEHVESLYRPLTEDKGLEF 979 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNG 717 V+ L S DR RL QI +LSNA+ F+ KG + V + A R Sbjct: 980 SVVLSPSLPPSLRTDRNRLEQILRNMLSNAVKFTDKGKVELRIRPAPATEVTVPALRSAA 1039 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + F+V++ G IP D +F F R+ G GLGLSI L GG + + Sbjct: 1040 RRVAFAVRDTGIGIPSDKLSRIFEAFQQLDGTTSRKYGGTGLGLSISRELTTLLGGELQV 1099 Query: 775 SSSDEGV-TTINCRIP 789 SD GV +T +P Sbjct: 1100 -RSDVGVGSTFTLYLP 1114 >gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 587 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 33/342 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EGV V DG I L NPAFR ++ ++ G + + C ++ DL A Sbjct: 255 MGEGVMVASADGAITLVNPAFRKMFA-----MTDGVEGKKLIEVCRNPDLQAAFHDL-AR 308 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLP----NAQTMLTFVNVTDSVRAERALTEK 558 E + G + LL+ V PL + F ++TD Sbjct: 309 CGGELSREIRIQPGDVTLLTHWV------PLAMDGAGQGVVAVFHDITD----------- 351 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASS 617 ++ +E++ FV +VS+ELR+P++ I G+ + L++ L S +++VE I + Sbjct: 352 ---MKHVEEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHA 408 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L L+NDIL L+ ++A L + + + + + +A + E I + L Sbjct: 409 ERLTTLINDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNL 468 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + D+ RL Q+ ++ NA+ ++ +G T+ L A + SV+++G IP Sbjct: 469 PRTLVDQGRLEQVLVNLIDNAVKYTPEGGTIRLFAEQGETFLRISVQDSGIGIPPRDLPR 528 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F RF V ++ G GLGL+I + + LHGG ++++S+ Sbjct: 529 IFERFYRVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTST 570 >gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 977 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 L + E A++ K++F+ ++S+ELR+PL IIG+++++ + ++ I Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + LL L+N ILDL+ ++AG M+L + L +L+N VK I + +N ++ V Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G AD +L Q +LSNA F+ +G T+ L+ A +F V ++G + + Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 642 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F F R+ G GLGLSI FI + GG +++ S +T +P + Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 702 >gi|198282750|ref|YP_002219071.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667905|ref|YP_002424945.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247271|gb|ACH82864.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520118|gb|ACK80704.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 494 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R++ L++ + +++ F+ VS+EL +PL + ++LL + ++G L +Q + +E Sbjct: 250 RSIESMQTRLQEEERLRHEFLSQVSHELITPLASARSGSELLLSERIGPLLPRQREVLEI 309 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I L + ++LD+ + A + + I + D+L ++++ + + N + + Sbjct: 310 IVRQVKELYAAIQEMLDMHALQARSLDFSPQDIAVADVLLDLQKRMQPLTDKKNQILDCV 369 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 LG + AD QRL QI + ++SNA +S G + ++A G +F V +NG IP+ Sbjct: 370 GSEGLGVY-ADPQRLRQILTNLVSNAHKYSPAGGQIKVRATAQQGGTLFCVSDNGPGIPD 428 Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + + VF RF VSN RG GLGL+I + GG + + + G Sbjct: 429 ALLERVFERFYQVPVSNRL---PRGTGLGLAITRELVGAQGGWIRMHNRPGG 477 >gi|191637033|ref|YP_001986199.1| Sensor protein [Lactobacillus casei BL23] gi|190711335|emb|CAQ65341.1| Sensor protein [Lactobacillus casei BL23] Length = 396 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + + Sbjct: 148 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EEELLKYTHTAYLKAKQMKV 206 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+ + V + KLN + +L ++ S + H+ ++RI V + A Sbjct: 207 LVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPDPLMMEA 266 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L ++F+ ++ NA+ + G + L A R + + V N+G+ IP D +F+RF Sbjct: 267 DTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLFDRF 326 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + + G GL L+I +S I LHGG++ SS E +T+ +P K Sbjct: 327 YRVEESRSQETGGTGLELAIAQSIIALHGGYIYADSSPE-ITSFVIHLPLK 376 >gi|170078960|ref|YP_001735598.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169886629|gb|ACB00343.1| two-component hybrid sensor and regulator (His Kinase A domain protein) [Synechococcus sp. PCC 7002] Length = 372 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 8/249 (3%) Query: 548 SVRAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 S R + L N +R+ + ++K F+ S+E R+PLT+I+GFT+LL+ Sbjct: 118 SDRKQVELDMHNALMREKELNQLKTRFIDIASHEFRTPLTSILGFTELLEQYAHKFNPEA 177 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HE 664 Q ++++ I ++ L LV+D+L ++ VDAG + L + + L ++ + + H Sbjct: 178 QRRHLQRIKGAAQRLQTLVDDVLSVSRVDAGQLTLEPAPVHFEGLCQDIIEELQVVFGHT 237 Query: 665 NNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + IR + D +L V D + + I S +LSNA+ +S G V L + Sbjct: 238 HPIRFDFVPQYQGDRRLLP-VLDAKIIRHILSNLLSNALKYSFPGEAVSLVVCCGDRQIS 296 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 ++ + G IP+ +F F + G+ G GLGL IV+ +I+LH G + ++S Sbjct: 297 ITITDRGIGIPQADLPHLFEPFHRAQNVGKIPGTGLGLHIVKRYIDLHNGTIMVASLVNS 356 Query: 781 VTTINCRIP 789 TT +IP Sbjct: 357 GTTFRVKIP 365 >gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis Bt4] gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 987 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S+ Sbjct: 477 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 536 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+++QS+ ++ + + S LL+++NDILDL+ V++G M L + LL E+ + Sbjct: 537 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 593 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A ++ + + +G + D R+ QI S ++ NA+ F+ +G + KAA Sbjct: 594 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 653 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + V + G I D ++F+ + RR G GLGL + + + GG Sbjct: 654 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 713 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + S + TT+ +P +E Sbjct: 714 IEVDSLPDFGTTVTVVLPLRE 734 >gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 496 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + EK A+ + D+ + FV +VS+ELR+PLT I G+T+ L ++ QY+ + Sbjct: 253 IQEKITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEAL-LDGFAETEEERQQYLNNVL 311 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L LVND+LDL ++++G M L + L LL +V + + + + ++ Sbjct: 312 EESQRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAE 371 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + AD RL Q+F ++ NA+ + G V + +A + +VK++G I Sbjct: 372 EVWEAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETDKVFVTVKDSGPGISSKD 431 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ RF V A G GLGL+I ++ I+ HGG V ++S T + +P Sbjct: 432 LPLIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLP 488 >gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31] gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31] Length = 698 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 7/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E + +A K+ F+ ++S+E+R+PL ++G +++ S LGS ++++ I Sbjct: 311 VVEARDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGS---PHREHLKIIR 367 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673 S LL ++ND+LDL+ ++AG +L+ L + + + A + ++ +K I+ Sbjct: 368 DSGETLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIA 427 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 LG++ D RL Q+ S + SNA+ F+ +G + A G F++ + G I D Sbjct: 428 PDALGAWCGDSVRLRQVLSNLASNAVKFTHEGQIRLTVGATSEG-LTFTLTDTGIGIAPD 486 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S+F +FV RR G GLGL+I + GG + + S+ +T R+P Sbjct: 487 RIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLP 544 >gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 631 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 139/257 (54%), Gaps = 12/257 (4%) Query: 544 NVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++T + +E AL + NE L+ D++K+ F+ +VS+EL++PLT+I G+T+L+ Sbjct: 375 DITTRIESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYD 434 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 LG+L+ +Q + + + ++ L LV+ +L ++ +G ++ + + + +++ Q Sbjct: 435 ESLGTLSEQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQ 494 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + ++ E + ++ + + DR +L + + ++ N++ F+ +G ++ ++ Sbjct: 495 DLKIQIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKF-TIKEE 553 Query: 717 GDFIFSV-KNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVS 773 +FI V K+NG IP DM +F RF +A R ++ G GLGL I + + H G + Sbjct: 554 DEFIHIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIW 613 Query: 774 ISSSDEGV-TTINCRIP 789 + S E T ++ ++P Sbjct: 614 VESKGENKGTEMHIQLP 630 >gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator [Maribacter sp. HTCC2170] gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Maribacter sp. HTCC2170] Length = 1356 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 14/228 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASS 617 L++ +++KNS ++++E R+PLT I+G TD L++ LN+K + VE I + Sbjct: 838 LKEVNQLKNSLYDNITHEFRTPLTVILGMTDALESE----LNTKTTPPINNAVEMIRRNG 893 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+LVN++LDL+ +++G ++ N + I + + + +S + E+ I V S+ Sbjct: 894 NNLLSLVNEMLDLSKLESGHLETNMAQINVVPFIKYLGESFQSFAQEDEIHFTVYSEVDE 953 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 D +L I S +LSNA+ F+ ++L +N I V + G+ I +D Sbjct: 954 LMMDVDTTKLSTIISNLLSNAIKFTPALGKIVLHLHNENNTHLIIKVSDTGTGISKDELP 1013 Query: 737 SVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 +FNRF S R +R G G+GL++ + +NL GG +S++++ DEG Sbjct: 1014 HIFNRFYQADSTVTR-KRDGTGIGLALTKELVNLLGGEISVTTAVDEG 1060 >gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1336 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R L E A K+ F+ ++S+E+R+P+ IIG T+L + + SL Sbjct: 679 DVTERRHLTRQLQRAKEEAEAASRAKSDFLANMSHEIRTPMNAIIGMTNL---TLMTSLT 735 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q++++ + +++ L+ L+ DILDL+ ++A + L L DLL + +A + H Sbjct: 736 REQTEFLGTVKSAAESLMQLLGDILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAH 795 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-D 718 + I ++ G G D RL QI ++ NA+ F+ G ++ L+A DN + Sbjct: 796 GKGLELIGRMAPGAPGRLRGDPLRLRQILVNLVGNAIKFTDHGQVLVEARLEAMADNKLE 855 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV + G I + VF+RF RR G GLG +I + L GG + + S Sbjct: 856 MRFSVVDTGVGIEPENIGRVFDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVES 915 Query: 777 S 777 + Sbjct: 916 T 916 >gi|229587665|ref|YP_002869784.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229359531|emb|CAY46372.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 595 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 23/353 (6%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +D + +G+ + GR++ NP + +E RL G A +E Sbjct: 263 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLG----EALVRPELDEQLQLV 318 Query: 499 LFAAII-TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556 L + + +D ++G L LL+ YS+ P+ + Q +L V V V +RA Sbjct: 319 LRGGSLERAPEDLEVEVEGELRLLT-----YSLTPVSHTQGHILGAVMVLHDVTEQRAF- 372 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + +++ FV S+ELR+P+T + L + +S+++ ++ ++ Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPPDSREADLLDTVNEE 423 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L+ L+ND+L+ + G+ KL + DLL + + N+ + V + Sbjct: 424 MQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHARARFVEPANVQNVELMVEAQSD 483 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L AD+ +L ++ +L NA+ + G + L+A R I SV++NG I Sbjct: 484 LPRLYADQAQLERVLDNLLGNALRHTPNGGQIRLQARRHGERVIISVEDNGEGIAYGQQG 543 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV + + G GLGL++ + + LHGG + + S T +P Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594 >gi|254517110|ref|ZP_05129168.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3] gi|219674615|gb|EED30983.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3] Length = 1470 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 12/228 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDL 630 F+ +S+E+R+P+ IIG TDLL LG +LN Q +Y E S LL+++NDILD Sbjct: 847 FLATMSHEIRTPMHGIIGMTDLL----LGTALNPPQRRYAETAKQSGENLLSIINDILDF 902 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689 + ++A ++++ + +N L++ V Q + + N+ + S + D +++ Q Sbjct: 903 SKIEASKIEIDKHSFDINLLIDRVCQLQSVTAEKKNLGLLSYPVTNCSSEIYGDEKKIGQ 962 Query: 690 IFSKILSNAMDFSSKGSTVILKA--ARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSN 745 + ++ NA+ F+S+G + A+ D++ SVK+ G + E+ VF +F Sbjct: 963 CLTNLVGNAIKFTSEGRIQVTATVEAKGQDDWVLELSVKDEGIGMDEETQSRVFEQFTQA 1022 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RR G GLGLSI + FI L G V + S+ + TT+ +IP+K Sbjct: 1023 DASTTRRFGGTGLGLSITKQFIELMNGEVILESAPQAGTTVTIKIPTK 1070 >gi|170751052|ref|YP_001757312.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657574|gb|ACB26629.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 630 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 5/226 (2%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVND 626 IK F+ +V++ELR+PL IIGF+++L SL Q+ +Y I AS LL +VN Sbjct: 351 IKGRFLANVTHELRTPLNAIIGFSEVLAGEGAVSLGPVQAREYAGIIGASGHHLLGVVNT 410 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LD++ + +G T + DLL + K + + G + AD Sbjct: 411 LLDMSRIQSGNFDCAPETFDVADLLRGCCDLMRLKADAAGVALTAAPSGPV-EITADPAA 469 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--- 743 Q+ ++SNA+ F+ G + L R G V + G I D + F Sbjct: 470 CRQVLINLISNAVKFTPSGGRIDLSLRRGAGSLDIVVADTGVGIGADDLPKLGTPFFQAG 529 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S ++ Q G GLGLS+V+ + LHGG + I S+ + T + +P Sbjct: 530 SGGYKRQHEGTGLGLSVVQGLVGLHGGSLLIESAPQAGTVVTVTLP 575 >gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 957 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL IIGFT+LL S L +Q ++ I SS Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLSTIRKSS 337 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 ILL ++NDILD + ++AG + L+ L D++ EV +A H N+ + ++ + Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDV 397 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729 + + D R+ Q+ + +++NA+ F+ G V+L+A+ + + S+ ++G Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEEEEADTNRVTLRLSITDSGVG 456 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +S+FN F R+ G GLGL+I + + GG + + S Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505 >gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 423 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P P A +L + ++T+ + + AL + +++AD++KN+F+ ++S+E+R+PL I+G Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F L+ + S +Q +Y I+ + +LL L+NDILDL+ +++G + N S + L D Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706 + E + KM + + ++ + V D R+ Q+ +LSNA+ F+SKG Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + D F+ SV + G I E+ +SVF RFV Q G GLGL I + + Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376 Query: 766 NLHGGHVSISS 776 GG + + S Sbjct: 377 EQLGGEIGVRS 387 >gi|302877319|ref|YP_003845883.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gi|302580108|gb|ADL54119.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 509 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 124/224 (55%), Gaps = 12/224 (5%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTI 619 A A K+ F+ ++S+E+R+P+ +IIGF++L L + + K Q ++ I SS + Sbjct: 269 AAEAASRAKSDFLANMSHEIRTPMNSIIGFSEL----ALDNPDPKDQQIFLSQILESSNM 324 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++NDILDL+ +++G M L+ ++ ++LL +++S A + E + ++ G+ G Sbjct: 325 LLGILNDILDLSKIESGRMMLDVASFDFDELLGSIERSFALRAQEAGLGFTLLRLGESGR 384 Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734 F+ D RL QI + +L NA+ F+S+G T + ++ FS+++ G + + Sbjct: 385 VFLGDVLRLRQILTILLGNAVKFTSQGETSLEVKQIRVPDGKVRLEFSIQDTGIGMSAET 444 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 K++F FV + RR G GLGL I + + G +++ S Sbjct: 445 IKNLFQPFVQADNSITRRFGGTGLGLVIARNLAQMMHGRITVES 488 >gi|86157538|ref|YP_464323.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774049|gb|ABC80886.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 463 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISA 615 E A+R D++ + VS++L++PL I + LL+T L ++ E I Sbjct: 239 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSAALLLRTGAAPRLR----RHAETIQR 290 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S+ + L+ ++LDL++++AG + + L+ ++ E ++ E + + + G Sbjct: 291 SAARMDRLIRELLDLSSIEAGRLVVEPRPEPLDAVVEEALAGLSPLAQERGVALAADTAG 350 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 DR+R+LQ+ S ++ NA+ F+++G V ++AA + V+++G I Sbjct: 351 AREPVPCDRERILQVLSNLVGNALQFAARGGHVTVRAALAPAEARVEVRDDGPGIAPAQL 410 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + VF+R+ + G RRG GLGLSI + + HGG + + S +T +P + Sbjct: 411 RRVFDRYWKS---GSRRGSGLGLSIAKGIVEAHGGRIEVESQLGAGSTFRFTLPRR 463 >gi|265983704|ref|ZP_06096439.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662296|gb|EEZ32557.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 532 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 431 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479 >gi|262166423|ref|ZP_06034160.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus VM223] gi|262026139|gb|EEY44807.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus VM223] Length = 785 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 129/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L S V D RL Q+ ++SNAM F+ +G V+ +A + D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQHADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE+ + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 771 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 7/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L++ D +K+ F+ S+ELR+PL IIGFT + G LN +Q + + Sbjct: 517 LERANVRLQELDRLKSMFIAATSHELRTPLNAIIGFTGMTLQGLSGELNEEQQDNLARVY 576 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL L+ DI+D++ ++AG + + L +L++E + ++ ++ ++ Sbjct: 577 RSAKHLLALITDIIDISKIEAGKISIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELP 636 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733 L + ADR+RLLQ +LSNA F+ KG +I+ A G SVK++G I P+D Sbjct: 637 AALTVY-ADRKRLLQCLVNLLSNAAKFTEKGR-IIVAARESEGSIELSVKDSGIGIAPQD 694 Query: 734 MCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789 + + F R S+ R Q G GLGL + + ++ G +S+ S + +T +P Sbjct: 695 LPRLFKPFERLESHL-RVQAGGTGLGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLP 752 >gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] Length = 558 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KL+ T+ + LL ++ + K E I ++V + K S Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQV-NALKGVS 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3] gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3] Length = 647 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 6/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ I+G T ++ L +L Q + ++ ++ S LL ++NDIL Sbjct: 270 KSQFLAVMSHEIRTPMNGILGMTQAMQADPLPAL---QRERLDIVAESGAALLTILNDIL 326 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ V+AG M+L L LL ++ + A+ + + + + G + D RL Sbjct: 327 DLSKVEAGKMELESVAFDLGILLGNLRSTYASTADDQGLILALDLGDAAGLYRGDPTRLR 386 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QI S ++SN++ F+++G + + A RD + +V + G + ++ +FN F Sbjct: 387 QILSNLISNSLKFTARGR-IDIAARRDGQTLVLTVADTGVGMTTEVIARIFNPFAQADAS 445 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGLSIV L G + + S Sbjct: 446 TTRQFGGTGLGLSIVHELTRLMQGRIDVDS 475 >gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 768 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E E A++ K+ F+ ++S+E R+PL I+GF+ LL + + S Q + Sbjct: 295 RQLKEAIETTEIANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDR--RITSDQQSNLNV 352 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL+LVN+++ L+ ++AG++ + L+ L V+ ++ + + +I+ ++ Sbjct: 353 ILRSGEHLLSLVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIH 412 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKN 725 + +V D ++L QI +L NA+ F+ +GS V R + F +++ Sbjct: 413 IAPDVPQYVRTDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQD 472 Query: 726 NGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP + +F F + +R G+GLGL+I + FI+L G +SI S + TT+ Sbjct: 473 TGPGIPGHLLPQLFEPFAQDPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTV 532 Query: 785 NCRI 788 + I Sbjct: 533 SFYI 536 >gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V +I + LL L+N++LD+A ++AG + L+ + L+ +L E ++ Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI ++ + +LG +ADRQRL+Q+ +LSNA+ ++ V ++ R Sbjct: 496 DGNIELEELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ +EG Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614 >gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] Length = 1392 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L +Q ++ Sbjct: 938 QARRTLEERAEQLAVSSRYKSEFLANMSHELRTPLNSLLVLAKLLTENAEGNLTVQQVEF 997 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + + LL L+NDILDL+ V+AG M ++ I L L++ + + A + + Sbjct: 998 ARTIHGAGSALLQLINDILDLSKVEAGRMDIHPQQISLPKLVDYFEATFAPLAQDKGLSF 1057 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--VILKAAR-----------D 715 V D + D QRL Q+ +LSNA+ F+ KG ++ A R Sbjct: 1058 AVEVDSSVPQELRTDEQRLQQVLRNLLSNAIKFTPKGEVRLRVIHAQRAVAFVDDTLRGA 1117 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +G F V + G I D + +F F R+ G GLGLSI L GG + Sbjct: 1118 DGILAFEVVDTGIGIAADKLEVIFEAFRQADGTTSRKYGGTGLGLSICREIARLLGGEIH 1177 Query: 774 ISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 1178 VVSEVGQGSTFTLYLP 1193 >gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1101 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 20/258 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ AE L A + K+ F+ ++S+E+R+PL I+G L+ T++LG Sbjct: 667 TLQDITERKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLG 726 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +Q+ Y + S L L++D+LDL+ +++G + + + L + +V + Sbjct: 727 A---EQADYADIAIQSGRRLARLLSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFLP 783 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------- 710 + IR+ V D + + D R+ Q+ + +L N+ F+ G + Sbjct: 784 ISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFTRIGGITLAVHRLPPPHA 843 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 A R +F++ + G IPED +F F SN R +G GLGLSI + ++L Sbjct: 844 PACR----VLFTISDTGCGIPEDKLGELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLM 899 Query: 769 GGHVSISSSDEGVTTINC 786 GG ++I S+EG T C Sbjct: 900 GGEITI-ESEEGAGTTAC 916 >gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis TXDOH] Length = 926 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S+ Sbjct: 416 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 475 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+++QS+ ++ + + S LL+++NDILDL+ V++G M L + LL E+ + Sbjct: 476 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 532 Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A ++ + + +G + D R+ QI S ++ NA+ F+ +G + KAA Sbjct: 533 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 592 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + V + G I D ++F+ + RR G GLGL + + + GG Sbjct: 593 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 652 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + + S + TT+ +P +E Sbjct: 653 IEVDSLPDFGTTVTVVLPLRE 673 >gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 937 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 L + E A++ K++F+ ++S+ELR+PL IIG+++++ + ++ I Sbjct: 424 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 483 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + LL L+N ILDL+ ++AG M+L + L +L+N VK I + +N ++ V Sbjct: 484 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 543 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 +G AD +L Q +LSNA F+ +G T+ L+ A +F V ++G + + Sbjct: 544 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 602 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F F R+ G GLGLSI FI + GG +++ S +T +P + Sbjct: 603 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 662 >gi|15896466|ref|NP_349815.1| histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15026292|gb|AAK81155.1|AE007818_1 Membrane associated histidine kinase with HAMP domain [Clostridium acetobutylicum ATCC 824] gi|325510624|gb|ADZ22260.1| Membrane associated histidine kinase with HAMP domain [Clostridium acetobutylicum EA 2018] Length = 475 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A+ K+++ + F+ +VS+E+RSP+T+I GF + + K+ Y+ L Sbjct: 245 AIEKSEKNRREFISNVSHEIRSPITSIKGFIGGMLDGVIPK--EKERYYLSLTYDEINRL 302 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LVND+LDL++++AG +KLN + I +N+++ TK+ E + + V + Sbjct: 303 TRLVNDLLDLSSIEAGHLKLNLTKIDINEIIRFTVLKFETKIKEKKLNVDVCFNNDKVYV 362 Query: 681 VADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD+ R+ Q+ + ++ NA+ + ++G I R N +I ++ NNG IPE+ ++ Sbjct: 363 IADKDRISQVVTNLIDNAVKYVYAEGEIKISTKERYNKAYI-TIYNNGPQIPEEDFNHIW 421 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +RF S+ R + GLGL IV S + HG +++ + EG Sbjct: 422 DRFYKSDKARTTKMSTGLGLPIVRSILTEHGQDINVINKKEG 463 >gi|298247274|ref|ZP_06971079.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549933|gb|EFH83799.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 391 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 25/269 (9%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N + L N S AE L E N L +AD +K+ F+ S+ELR+P+T I G+ LL Sbjct: 126 NYRQQLLHANQEISQHAEE-LAESNTRLEQADRVKDQFLSMASHELRTPVTGIQGYVQLL 184 Query: 595 KTSKLGSLNSKQSQYVEYISASSTI---------LLNLVNDILDLATVDAGIMKLNYSTI 645 L L + Q E++ + L +LVND+LD+ T+ +G M ++ Sbjct: 185 ----LHRLKKQSIQNPEWLPMYDALGKVDEQTRRLTDLVNDLLDINTLRSGKMPVHLEFC 240 Query: 646 VLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L L V +Q++ + +I +++ +D + D +R Q+ S ++SNA+ +S Sbjct: 241 ELGCLCRRVVEEQQALVGR----SIDLRLPADPV--TVQVDNRRFSQVVSNLVSNALKYS 294 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSI 760 K + ++++ ++ G+ I +V N + ++ KS+F F + A G GLGL+I Sbjct: 295 PKNTPILVEVSQRPGEAILAVHNESPVLTKEQQKSLFEPFYRSCEAQSPATPGWGLGLAI 354 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 + + LH G + + SS E TT +P Sbjct: 355 CKEIVVLHNGRIWVESSAEKGTTFFVALP 383 >gi|254718728|ref|ZP_05180539.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306838706|ref|ZP_07471541.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|306406193|gb|EFM62437.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 609 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 508 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556 >gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 1945 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L + K+ F+ ++S+ELR+PL +++ LL + G+L KQ Y Sbjct: 1235 QARRSLEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSENTDGNLTLKQVDY 1294 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ T LL L+NDILDLA +++G M + ++ DL + + ++ + + Sbjct: 1295 TRTIYSAGTDLLGLINDILDLAKIESGTMSVEIEQVLFTDLRDHLDRTFRQVAQDKKLSF 1354 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718 + +S D +RL Q+ +LSNA F+ +G + ++ AR+ Sbjct: 1355 LIELSGAVPKGLYTDAKRLQQVLKNLLSNAFKFTERGEVKLSVEVAREGWSLEIETLTNS 1414 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G I + + +F F R+ G GLGLSI NL GG + Sbjct: 1415 ATVLAFSVSDTGIGISPEKHRVIFEAFQQADGSTSRKYGGTGLGLSISREIANLLGGEIQ 1474 Query: 774 ISSSDEGVTTINCRIP 789 ++S +T +P Sbjct: 1475 LTSRPGEGSTFTLYMP 1490 >gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] Length = 882 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L E A++ K+ F+ ++S+E+R+PL I+G T++L S+ LNS Q + Sbjct: 371 ERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSR---LNSSQKDILS 427 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS LL L+NDILDL+ +++G + L+ S + + + E ++TK + + ++ Sbjct: 428 DIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKALKQQVELRA 487 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVKNNG 727 +S S D R QI +LSNA+ F+ GS ++ + G+ + SV + G Sbjct: 488 TLSPDIPDSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYLHCSVVDTG 547 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I E+ + +F F RR G GLGL+I L GG ++ SS+ + + Sbjct: 548 VGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASSTPGLGSRFS 607 Query: 786 CRIPSK 791 IP++ Sbjct: 608 FVIPAQ 613 >gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 636 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL E+ A+ K+ + S+E+R+PL IIG + LL + L +++Q+ Y + Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPL---SAEQATYAKA 163 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S LL L +++LD A ++AG ++L+ VL+ L+ ++ + +A + + I Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730 D +L S + D RL Q+ + NA+ F+ G ++ D D + V++ G I Sbjct: 224 IDERLPVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSDGLRIIVRDTGIGI 283 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 D +F+ F A G R G GLGLSI + +++ GG +++ S +T Sbjct: 284 APDAQARIFHEF-EQADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTIT 342 Query: 788 IP 789 +P Sbjct: 343 LP 344 >gi|262196966|ref|YP_003268175.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262080313|gb|ACY16282.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 798 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 15/223 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL +IG T+LL ++ L+ +Q +Y E ++ + LL L++D+L Sbjct: 564 KSRFLNNMSHEMRTPLNAVIGMTELLIDTE---LDDEQREYAEVVTEAGVALLALIDDVL 620 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D+A +++G M L + L + V + + E +R +++ + D RL Sbjct: 621 DVARIESGTMTLEEAPFSLRAAIGGVMSLLDARACEAGLRFASEVAEDVPDLLIGDAGRL 680 Query: 688 LQIFSKILSNAMDFSSKGST--VILKAARDN---GD----FIFSVKNNGSSIPEDMCKSV 738 Q+ +++NA+ F+ +G + +AA ++ GD FSV++ G +PED + Sbjct: 681 RQVLLNLVNNAIKFTEQGGVDLAVARAAEESEAPGDGSVVLRFSVRDTGIGVPEDKQAVI 740 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 F F RR G GLGL I + L GG +++ S E Sbjct: 741 FKVFEQADMSLSRRYGGTGLGLPIAVELVQLMGGELALESEPE 783 >gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 998 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 11/238 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L N+ L + E K+ F+ +S+E+R+P+ +IG +LL+ + L ++Q +YV Sbjct: 336 RELGVANDKLVQVTEAKSRFLSAMSHEIRTPMNGVIGMAELLEGT---DLTNQQGEYVSL 392 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I S+ LL L+NDILD + ++AG + L + L D+L + Q++A + +E +I + Sbjct: 393 IIKSADTLLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFH 452 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNG 727 I + D RL Q+ ++ NA+ F+ G + L++ D+ +F V+++G Sbjct: 453 IPPDIPDKLIGDPLRLRQVIVNLVGNAIKFTEVGEVAVDLLLQSISDSDIQLVFEVRDSG 512 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 I + VF F + Q G GLGL+I + GG +++ S +EG T Sbjct: 513 IGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEGST 570 >gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1937 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ +L EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L+ KQ ++ Sbjct: 1230 AKISLEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENREGNLSDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+A+ + LL+L+NDILDL+ +++G + L + L DL + +S E + Sbjct: 1290 RTINAAGSDLLSLINDILDLSKIESGTVSLELGDVDLQDLAGHLDRSFRPLAEERQLAFT 1349 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + L V D +RL Q+ +LSNA F+ KGS V LK G F Sbjct: 1350 IDVAPALPRLVRTDSKRLQQVLRNLLSNAFKFTEKGS-VALKLGSAEGSPLRAGSQWMAF 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G IPED + +F F R+ G GLGL+I L GG + +SS Sbjct: 1409 TVTDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVLSS 1465 >gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 2099 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ KQ ++ Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LLNL++DILDL+ +++G + ++ I +++LL + + + ++ Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEMMARPFRHEAENRDLSF 1525 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V + S + D +RL QI +LSNA F+++G + A+ +G Sbjct: 1526 SVDVGADVAKSLITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHA 1585 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G IP + + +F F R+ G GLGL+I NL GG + Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645 Query: 774 ISSS 777 + S+ Sbjct: 1646 LRST 1649 >gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 679 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 13/234 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSK-QSQYVEYISASSTIL 620 R+ D +KN F+ ++ELR+PLT ++G+T+LL + + K Q++ + I + L Sbjct: 442 RELDRMKNEFISTAAHELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLTTIYEKACRL 501 Query: 621 LNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 +V D+LDL+ V +G ++ L+ ++ +N LL +++ + + + + D + Sbjct: 502 EGIVADLLDLSRVHSGCLIALSRASCDINSLLC---RAVGGYQYRQDFTVALELDSEEVV 558 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++L Q+ +LSNA+ FSS+ V ++ RD+ ++ V+++G + + VF Sbjct: 559 LWADEKKLEQVMDNLLSNAVKFSSESCQVFVRGHRDDDVYVIEVEDHGIGMTPKQVERVF 618 Query: 740 NRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F S+ G G+GLG+SIV++ + H G + + S T I R+P Sbjct: 619 DKFYRVDSSDTAPG---GLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLP 669 >gi|21225508|ref|NP_631287.1| two-component system sensor kinase [Streptomyces coelicolor A3(2)] gi|8546942|emb|CAB94654.1| putative two-component system sensor kinase [Streptomyces coelicolor A3(2)] Length = 503 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + F VS+ELR+PL + TD+L G L+ + V IS +T L Sbjct: 258 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 316 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+++++ DAG L+ I DL +++++AT+ ++ + + + G+L V Sbjct: 317 ALVDDLMEVSRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 373 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +RL I + +++NA+ + + L A R + +V++ G IPE + V Sbjct: 374 -DPRRLDVIVANLVANALRHGAPPVRLNLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 432 Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF +A R + G GLGLSI + LHGG V ++ EG +P Sbjct: 433 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 484 >gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB] gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB] Length = 853 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 540 LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +TFV ++++ RAE+ L E E +A + K++F+ ++S+E+R+P+ I+G T L++ Sbjct: 444 ITFVSDISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRR-- 501 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G ++ ++ +E I AS LL++++DILDL+ ++AG + L + ++L LL EV + + Sbjct: 502 -GLTDAALNEPLERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEML 560 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG 717 + E N+ ++V S G + + D RL Q +NA+ F+ G+ T+ + +N Sbjct: 561 RGRAQEKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGAITLRSRVIEEND 620 Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + I V++ G I + +F F R+ G GLGL+I L GG Sbjct: 621 ESILVRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAA 680 Query: 773 SISSS 777 SS Sbjct: 681 GAESS 685 >gi|22095682|sp|Q9M7M1|ETR1_PRUPE RecName: Full=Ethylene receptor gi|6841075|gb|AAF28893.1|AF124527_1 ethylene receptor [Prunus persica] Length = 738 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709 + + ++ + + +D + + V D +RL+QI ++ NA+ FS +GS I Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490 Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 A DN ++ VK++GS I P+D+ K +F +F R G G Sbjct: 491 SLRDFRAPEFFPAQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574 >gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 689 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 17/243 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615 ++ D++K F+ VS+ELR+PLT+++GFT ++K ++ + N K + V + Sbjct: 196 KEVDQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFPQVQTDNKKIQRTVRQVKD 255 Query: 616 SSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + TI+++ L+ND+LD+A ++AG + N +++++++ + ++ +I+ Sbjct: 256 NVTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETKHIQ 315 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +L D+ RL+Q+ ++SNA+ F+ KG T+ +A + + + I SV + G Sbjct: 316 FIKKVETELPEISGDKDRLIQVLINLISNAVKFTQKG-TITCRATQRHSEIIISVIDTGM 374 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I VF +F V + + +G GLGL I + + HGG + + S + +T + Sbjct: 375 GIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGSTFSF 434 Query: 787 RIP 789 +P Sbjct: 435 TLP 437 >gi|315039138|ref|YP_004032706.1| Sensor protein [Lactobacillus amylovorus GRL 1112] gi|312277271|gb|ADQ59911.1| Sensor protein [Lactobacillus amylovorus GRL 1112] Length = 384 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +Y+ + + + Sbjct: 148 RVIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYINIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + +T+ + KLN + + + +L +V + + I I++ + K + A Sbjct: 206 LANDLFEYSTLKSTNTKLNLARLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + + L A N + V+NNG IP+D K +F R Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGEPIPKDSQKKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI +S ++LH G + SD+ T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDKNWTSFIIRLP 374 >gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 944 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------KTSKLGSLNSKQSQYVEYISAS 616 R+ + +K+ F+ VS+ELR+PL++I G L+ + LG Q + + IS + Sbjct: 456 REIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQISLN 515 Query: 617 STI-LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +T L+ LVNDILD+ ++ G ++L + + + + + ++ + I + Sbjct: 516 NTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDVPP 575 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 L AD+ R++Q+ +LSNA+ FSSKG V+L + FSV++ G IP Sbjct: 576 NLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETSVVRFSVRDWGPGIPHTDQ 635 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F +F ++ A+ +R G GLGL+I + + LHGG + + S + N +P Sbjct: 636 QFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLP 691 >gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1433 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 12/257 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D +AE L + E A K F+ +S+E+R+P+ +IG T LL + L+ Sbjct: 862 DISDRKQAEAELLQAKETAEAATRAKGDFLATMSHEIRTPMNAVIGMTGLLLNT---PLS 918 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q QY E I + LL+++NDILD + +++G + L L + EV +A + Sbjct: 919 PEQRQYGETIRNAGESLLSVINDILDFSRIESGHLDLEEHPFELPHCVAEVIDLLANRAV 978 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--- 718 E ++ ++V I G VAD RL QI +++NA+ F+ +G +I +K+ + D Sbjct: 979 EKSLHLEVQIDPGVPAVIVADSARLRQILVNLVANALKFTDQGEVMIRVKSVAVSPDGQQ 1038 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 FSV++ G I + +F F RR G GLGL I + GG + + Sbjct: 1039 QTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIRV 1098 Query: 775 SSSDEGVTTINCRIPSK 791 S +T + +P + Sbjct: 1099 QSRAGVGSTFSFTLPVR 1115 >gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 774 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E KA++ K+ F+ ++S+ELR+PL+ I+GFT+LL +L S Q + ++ I+ Sbjct: 373 LQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELLTGDT--NLTSDQLESLDIIT 430 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LLNL+NDIL L+ ++AG + L + LN + + + + + D Sbjct: 431 QSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLAAKQKQLELIFERD 490 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIP 731 + + D ++L Q+ +LSNA+ F+ G V LK D + F+V + G IP Sbjct: 491 ANVPEVIYLDEKKLKQVLINLLSNAIKFTEVGR-VTLKITYDAHQQNLHFAVIDTGPGIP 549 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 E +F F S R R+G GLGL+I + + L GG + +++++ Sbjct: 550 EHEQNKLFQVFQQTSTGIRS-RQGTGLGLAISQQLVQLMGGEIRVTTAE 597 >gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] Length = 589 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 10/220 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GFT+ L G+++ +Q Q++ I S Sbjct: 353 LKKLEQVRKDFVANVSHELKTPVTSIKGFTETLLD---GAMHDEQLRDQFLHIIWKESER 409 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L++D+L+L+ ++ +LN+ L +++EV + K E I I + ++G Sbjct: 410 LQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSF-D 468 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 D +RL QI +++NA+ ++S G + L A +D+GD + F V + G I E + Sbjct: 469 LEGDPERLKQIAINLVNNAITYTSNGGRIDL-ALKDHGDVVEFEVNDTGIGIRESEIPRI 527 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V A G GLGL+IV+ + H G + + S Sbjct: 528 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQGKILVES 567 >gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 757 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 7/258 (2%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+T +VT ERAL E + A+ K+ F+ S+E+R+PL IIG + LL Sbjct: 201 AETQCVGRDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLL 260 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + L +Q+ Y + S L +L+ ++LD + ++AG + L L+ L+ ++ Sbjct: 261 DTH---LTPEQATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDIT 317 Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713 + +A + ++ I D +L + + D RL Q+ + NA+ F++ G +I++ Sbjct: 318 ELLAPRAQARHLEIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPG 377 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 G+ F V++ G I + +F F R G GLGLSI + + GG Sbjct: 378 AMPGEIRFMVRDTGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQ 437 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S+ +T +P Sbjct: 438 ITLHSAQGTGSTFEFVVP 455 >gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] Length = 643 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ A + E L + D K +F H+S+ELR+PLT I+G L+T +L ++ + Sbjct: 333 SARSYEAQQRRAEELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRT-QLAGADACVT 391 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I + L LVN +LD + ++AG M+ Y + L+ ++ + + + + Sbjct: 392 DELDVIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGL 451 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V DR ++ +LSNA+ F+ GS + A D + +V + G Sbjct: 452 DFRVDCPQLPEPVYVDRGMWEKVILNLLSNALKFTFDGSIRVTVRAGDT-HAVVTVADTG 510 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +P +F RF V NA G G+GL++V+ I LHGG ++ S++ T + Sbjct: 511 VGVPRQEMPRLFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFD 570 Query: 786 CRIP 789 R+P Sbjct: 571 VRLP 574 >gi|300362909|ref|ZP_07059079.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] gi|300352959|gb|EFJ68837.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] Length = 381 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAHDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNITFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG + S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374 >gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 873 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E AL ++ +K F+ ++++ELR+PLT I G+ DL+ K+GS + K + ++ I Sbjct: 237 LKESITALEESARVKKDFIANITHELRTPLTLIRGWADLVLDGKMGSDSEKLMETMDKIG 296 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + IL +N++L ++ +DAG++KL + + + + S + ++ I + D Sbjct: 297 LQTLILTKKINELLKISRLDAGMVKLVLTKTDIGACIFQAVLSFKGLVEQSGIHLTYTGD 356 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +G D+++L I + ++ NA F+ KG +++ + + + +VK+ G + + Sbjct: 357 ASVGEVFIDQEKLKDILNNLIRNAYKFTEKGE-ILVSLLKKSDRLVITVKDTGIGMSSAV 415 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 KS+F RF R+ G GLGL+IV+ + + G +S+ S T +P Sbjct: 416 LKSIFRRFHQGDSSTTRKYEGTGLGLAIVKDSVEMMNGTISVESMVGQGTVFTVDLP 472 >gi|159899882|ref|YP_001546129.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159892921|gb|ABX06001.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 733 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 122/218 (55%), Gaps = 5/218 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISASSTIL 620 + A +++ F+ S+EL++PLT ++G + L + +L ++ + + ++ I A ++ + Sbjct: 497 QNAVRLRDVFLSIASHELKNPLTTLLGQSQLSLRRLERLNLVDERLQRSLQAIEAQASRM 556 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +V +LD++ ++ G + + + I L LL ++ +A + + + S + Sbjct: 557 NKMVTALLDVSRIETGQLDIQHDQIDLAQLLQQLVNDLAITIDHHQLSYHCTSSQPI-QV 615 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 V D RL Q+F +++NAM +S + + V+++A R+ I ++++G IP + ++F Sbjct: 616 VGDPIRLEQVFVNLINNAMKYSPEQTEVLVRADRNAQQAIVQIRDHGIGIPAESIPNLFT 675 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF SNA R G+G+GL +V+ ++LHGG + +SS Sbjct: 676 RFYRASNAARSHVAGLGIGLFVVKEIVDLHGGSIEVSS 713 >gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 346 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/343 (24%), Positives = 160/343 (46%), Gaps = 37/343 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + +GV V DG I +N A SL+ E L + ++ + D+ Sbjct: 17 MVDGVLVLNIDGCIIQANKAAESLFLVREGVL--------LGKRLTQISENREISDMIDE 68 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERAL 555 ++T+ ++ T +S S L + + +P ++ F +VTD+ Sbjct: 69 VLTTGNE-----SFTETTISPSTLVFRVHAVPRKDHHERIEGAIVVFHDVTDA------- 116 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 R D+I+++FV +VS+ELR+PLT+I GF + L + + ++ + +++ I Sbjct: 117 -------RNFDQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAMENSDTCR-RFLSIIDT 168 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L L+ D+L L+++++ + L + V ++ E ++ ++ I Sbjct: 169 ETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPY 228 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + AD L Q+F +L NA+ ++ + ++++ R + I +VK++G IP + Sbjct: 229 PMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDSRIITTVKDSGMGIPHESL 288 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF RF V A Q+ G GLGLSIV+ + HGG V + S Sbjct: 289 PRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDS 331 >gi|116630288|ref|YP_815509.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|311110084|ref|ZP_07711481.1| sensor histidine kinase [Lactobacillus gasseri MV-22] gi|116095870|gb|ABJ61022.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|311065238|gb|EFQ45578.1| sensor histidine kinase [Lactobacillus gasseri MV-22] Length = 381 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG + S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374 >gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 370 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I L + +L F ++T +AE L + K+ + +VS+ELR+PLT+IIG Sbjct: 100 IDLDSEPVILGFCRDITTRKQAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIG 159 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F+D++ K G LN+ Q Y+ I S LL+L+ND+LDL+ +++G M+L+Y I L + Sbjct: 160 FSDIMLKGKAGKLNNNQINYLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTE 219 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ ++ ++ E + + + + D +L QI ++ NA+ F++ GS Sbjct: 220 IIEDLMAKLSPLASEKGLTLDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGSITT 279 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 DN ++ FSV + G IPED +F F +RR G GLGL++V+ + + Sbjct: 280 EVDFVDN-NYQFSVIDTGIGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEI 338 Query: 768 HGGHVSISS 776 HGG++ + S Sbjct: 339 HGGYIEVES 347 >gi|238853709|ref|ZP_04644076.1| signal transduction histidine kinase [Lactobacillus gasseri 202-4] gi|238833645|gb|EEQ25915.1| signal transduction histidine kinase [Lactobacillus gasseri 202-4] Length = 381 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNITFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG + S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374 >gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 860 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 29/371 (7%) Query: 424 DLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 +LE +++ L K + T H G+A G DG+ + N F + E + L Sbjct: 319 ELEHEHSALQKNERLLSATFHHAGVGIANIGLDGKFLMVNERFSKIVDHEPSSLL-SMSF 377 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK-----------SLQGTLELLSDSVLEYS 529 +I R + DL + ++ E++ L G L D +Y Sbjct: 378 DDITHPEDRAASHEGVRDLLNGVRRTYVAEKRYIGSHGDIVWTQLTGALLTKEDGSPDYF 437 Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I +++D RA+ +L +A++ K+ F+ +S+E R+PL I G Sbjct: 438 IS---------VIEDISDRRRAQESLRLALVDAERANQAKSEFLATISHEFRTPLNAISG 488 Query: 590 FTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 F+++L G L S K +Y I +SS LL LVN LDL++ +AG L + + Sbjct: 489 FSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAEAGNPALTIEPVDIA 548 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +++++ +S+ + I V AD + QI +LSNA+ + G ++ Sbjct: 549 EIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNLLSNAVKATPPGGSI 608 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFI 765 ++ ++ + V + G +PE + + + F NA+ R G GLGL+IV+S + Sbjct: 609 SVRVEANSDKHVLVVSDTGMGVPEHLVDRMTDPFTVIGGNAYH-SRDGKGLGLAIVKSLV 667 Query: 766 NLHGGHVSISS 776 H G + I S Sbjct: 668 QRHRGDLRIES 678 >gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 834 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 14/244 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L E A E K+ FV +VS+E+R+P+ I+G L++ + L+++Q+ ++ Sbjct: 205 EKELILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRT---DLDARQTDFLN 261 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670 I+ ++ LL L+NDILD + ++AG +K+ L+ +L ++ Q A K E + I Sbjct: 262 RINVAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIF 321 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI--FSV 723 +S D RL QI +++NA+ F+ +G V+ K A D G + FS+ Sbjct: 322 SVSQDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSI 381 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEG 780 ++ G I +F F R RR G GLGL+I + + L GG + + S+ +G Sbjct: 382 RDTGVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKG 441 Query: 781 VTTI 784 T + Sbjct: 442 STFV 445 >gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase [Leptosphaeria maculans] Length = 2472 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 16/243 (6%) Query: 554 ALTEKNEALRK-ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 A+ +N L++ A + K+ F+ +VS+ELR+PL +IG ++LLK S LN +Q+ Y + Sbjct: 1959 AIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASP---LNGEQAGYADS 2015 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + LL+++ND+LD + ++AG M + + LN+ + EV +++A E +K I Sbjct: 2016 IRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALAYTNAERG--LKTI 2073 Query: 673 SDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKN 725 + L + D RL Q+ +LSN+ F+ +GS V+ + A D D SV + Sbjct: 2074 EELYLDPEMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEADDWVDITCSVID 2133 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVT 782 G IPE+ K +F F R G GLGLSI ++ I N+ G V + S T Sbjct: 2134 TGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVPGKGT 2193 Query: 783 TIN 785 T++ Sbjct: 2194 TVS 2196 >gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1175 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 17/254 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T S RA L + E +AD K F+ VS+E+R+PL I+G LL T G L Sbjct: 635 DITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLT---GRLE 691 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S + +Y I LL+ VNDILDL ++ G ++L+ + L +L EV ++ + Sbjct: 692 SGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVEGLAN 751 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718 E I + + I+ V DRQRL QI ++ NA+ F+ +G I A +G Sbjct: 752 EKGIGLGLDIAPAVPALVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIETAPEHSGS 811 Query: 719 FI------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + +V++ G +P D ++F + RR G GLGL+IV ++ G Sbjct: 812 GMIGERLRLAVRDTGIGVPADRRAAIFEKLEQADSTIARRFGGSGLGLAIVRHLLDAMQG 871 Query: 771 HVSISSSDEGVTTI 784 + + S EG+ ++ Sbjct: 872 SIRVDSV-EGLGSV 884 >gi|284034896|ref|YP_003384827.1| histidine kinase [Kribbella flavida DSM 17836] gi|283814189|gb|ADB36028.1| histidine kinase [Kribbella flavida DSM 17836] Length = 618 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R A E++++ D + + V V++ELR+PL NI G+ L S+ G + + + Sbjct: 379 ARLGHAFNAMAESIQQHDHQRKAMVSDVAHELRTPLANIKGY---LVASEDGVVPLDR-E 434 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V + + +L LV D+ DLA DAG+++L+ + L +L +V + +R Sbjct: 435 LVTSLLEETGLLERLVADLQDLALADAGMLRLHPAPRDLAELAGQVVAAHRPAAEAAGVR 494 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +D + V D R+ Q ++SNA+ F+ G V++ RD D++ +V +NGS Sbjct: 495 VSAAADSPAPAIV-DSARIRQALGNLVSNAIRFTPAGGHVVVGVRRDGDDYLLTVSDNGS 553 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + +F+RF H R G GLGL+I + + H G ++++S +T Sbjct: 554 GIDAEHLPHLFDRFYRAEHSRSRATGGSGLGLAITKHLVEAHHGTITVTSHPGDGSTFTI 613 Query: 787 RIPS 790 R+P Sbjct: 614 RLPG 617 >gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp. AK-1] gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp. AK-1] Length = 644 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 6/239 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD RAERA + +A+ K+ F+ +S+ELR+PL I+GF LL+ L+ Sbjct: 252 DITDLKRAERAARDAMHEAERANRSKDEFLSRMSHELRTPLNAILGFAQLLQNLP---LS 308 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ +I + LL LVND+LD+ ++AG + + + D +++ Q I Sbjct: 309 PEAAESAGHILDAGKHLLALVNDVLDITWIEAGAPGITTAAVPAIDPIHQALQLIRPLAS 368 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 ++I I G L ++ AD QRL Q+F +L NA+ F++ V + + DF+ F Sbjct: 369 ASDIEIASDLHGALHRYILADTQRLRQVFLNLLGNAVKFNTAQGAVRVW-CEEKADFLRF 427 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G + E + +F FV + + G GLGL++ + + GG + I + G Sbjct: 428 FIMDTGPGMDESDAQRLFKPFVRLSQSAEVEGSGLGLALSKRLVQEMGGDLGIEHTAPG 486 >gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 850 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 11/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A++ K+ F+ ++S+E+R+PL ++G DL + + LN++Q +E Sbjct: 355 LNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDL---TLMSDLNNEQRDNLETAK 411 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+N+ILD + ++AG ++L S+ L DLL + + K E+N+ + Sbjct: 412 SCVDSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSIS 471 Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI-FSVKNNGSS 729 L + + D+ R+ Q+ + +LSNA+ F+ GS + LK DN +FI F V + G Sbjct: 472 SDLPEYIIGDQLRIKQVLNNLLSNALKFTEAGS-INLKVDINTIDNDEFILFEVSDTGVG 530 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I ++ + +F F V N++ + G GLGL+I + I GG + I S Sbjct: 531 IADEDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKS 579 >gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 534 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714 K + + V+ L +F D++RL+Q+ + ++NA+ F++KG ++ Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 D + FSV + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 456 DTSEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512 Query: 774 ISS 776 + S Sbjct: 513 VES 515 >gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 714 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 30/238 (12%) Query: 563 RKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RKA + IK+ F+ VS+ELR+PLT+I G LL T +LG L+ Q ++ ++ L+ Sbjct: 450 RKALERIKDEFISVVSHELRTPLTSIHGSIKLLATGQLGDLSDDGQQMLDIADQNTDRLV 509 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+LDL +++G K++ DL+ ++ + + + + +K S L Sbjct: 510 RLVSDVLDLQRIESGQAKISKHLCDAADLMTHATDAMRSMAYHHQVTLK--STPLLTMVW 567 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNG---------------- 717 A+ ++Q + ++SNA+ FS G TV L A A+D+ Sbjct: 568 ANPDYMVQTLTNLISNAIKFSQPGGTVELAAELRIEERRAKDSSSPPESHDTPFPITIKH 627 Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + F V + G IP D +SVF RF V + ++ G GLGL+I + HGG + Sbjct: 628 TELWFQVIDQGQGIPADKLESVFERFQQVDASDAREKGGTGLGLAICRKIVEQHGGKI 685 >gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1340 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 11/251 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ L A + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ +Y Sbjct: 886 QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRNLSPKQVEY 945 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L D++++V+ + + E +R Sbjct: 946 AHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQATFSPITAEKGLRF 1005 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI 720 V L + + DR + Q+ +LSNA+ F+ +GS + + Sbjct: 1006 TVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSGAGAGGRAPGQAVL 1065 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV + G I + + +F F RR G GLGLSI L GG + S Sbjct: 1066 FSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLGGEIQARSEF 1125 Query: 779 EGVTTINCRIP 789 +T ++P Sbjct: 1126 GRGSTFTLQLP 1136 >gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1851 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1339 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFA 1398 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPHAIREQLLEH 1518 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1519 GALRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLP 1601 >gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] Length = 571 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L++ ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ KLN T+ + +L ++ + K E I ++V + K S Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQV-NVLKRVS 453 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ A D + V + G I +D +F Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 775 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E LT + A+ K+ F+ ++S+ELR+PL IIGF+ +L+T + + Y+E Sbjct: 403 EHKLTIFADKAESANRSKDMFLANMSHELRTPLNAIIGFSQILQTRE--EIPQNMRSYIE 460 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS + LLNLVN ILD A ++AG + + +L+D+ E+ I+ NI + + Sbjct: 461 KISIAGNNLLNLVNTILDFAKLEAGKISYHPRMTLLSDIAKEISIIISPLAEAKNITLTM 520 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSS 729 +D L F+ D Q + Q ILSNA+ F+ VI D ++ S+ +NG Sbjct: 521 PADISLALFI-DAQLMKQSLINILSNAIKFTPNDGEVIFSITFDKQRNQYVLSICDNGVG 579 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSS 777 + ++ +F F + N + +G GLGL I + + +LHGG + + SS Sbjct: 580 MDKESISQLFTPFTQIDNHLQTASKGTGLGLVITKKIVEDLHGGKIWVESS 630 >gi|77459359|ref|YP_348866.1| histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383362|gb|ABA74875.1| histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 291 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LR+A ++K+ F+ ++S+E R+PL +I+ LL G L+ +Q + V ++S Sbjct: 44 LDTQAEQLRQASDLKSRFLSYMSHEFRTPLGSILSINSLLADELDGPLSPEQHKQVAFVS 103 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ L ++V+D+LDLA ++AG + ++ + + DL ++ + + + Sbjct: 104 TAARELSDMVDDLLDLAKIEAGRISISAAWFDMFDLFAALRGMFRPIVDATAVDLIFEEP 163 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D ++L QI +SN++ F+++G I G F+V + G I ++ Sbjct: 164 VGLPRLYTDDKKLAQILRNFISNSLKFTTRGEVRISARLEGEGKVRFAVSDTGIGIAAEL 223 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 ++F F V + + + RG GLGLS+ + F L GG V + S+ Sbjct: 224 HGTLFEDFSQVDSPLQKRLRGTGLGLSLCKRFAELLGGEVGVEST 268 >gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str. Langeland] gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra] gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613] Length = 615 Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + +L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSNA+ F++ G + + +D+G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVN-VKDSGENVYVHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V I S T ++PS Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPS 585 >gi|302877993|ref|YP_003846557.1| multi-sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gi|302580782|gb|ADL54793.1| multi-sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 604 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ F+ ++ELR+P+ +I G+++LL T + + +Q +++ I S +++++ Sbjct: 377 EVDRLKSEFLSTAAHELRTPMASIYGYSELLLTREFS--HDEQHEFLSTIYRQSELMISI 434 Query: 624 VNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +N++LD+A ++A G + + I L DLLN + IA N + +VA Sbjct: 435 INELLDIARIEARGSLDFTLTQIDLYDLLNNI---IAGCKPPNGRKCPQQPQRSTPLWVA 491 Query: 683 -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 DR++L Q S +LSNA +SS + + +G I + + G + + VF Sbjct: 492 GDRRKLTQAISNVLSNAYKYSSDEVGIEFLTSDLSGHLIGLRISDRGIGMTAEQLSHVFE 551 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF G+ G GLG+SIV+ I LHGGH+ I S T + IP+ Sbjct: 552 RFYRADDSGKFPGTGLGMSIVQEIITLHGGHIDIESQSGTGTIVTLWIPA 601 >gi|224540544|ref|ZP_03681083.1| hypothetical protein BACCELL_05458 [Bacteroides cellulosilyticus DSM 14838] gi|224517845|gb|EEF86950.1| hypothetical protein BACCELL_05458 [Bacteroides cellulosilyticus DSM 14838] Length = 465 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 16/237 (6%) Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L EKNE L ++D +K+ F+Q++S+E+R+PL I+GF+ +L T + + ++ Sbjct: 218 LQEKNEELTVARDHAEESDRMKSFFIQNMSHEIRTPLNAIVGFSQVLSTPDIEVDDEEKE 277 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I +S +L L+ND+LDLA++++G +++ + N+L + ++ + +H N Sbjct: 278 EFSMLIQQNSELLTTLINDVLDLASLESGKYRMHLAPHRCNEL---CQVAMVSVVHRNPK 334 Query: 668 RIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSV 723 ++K + + FV D++RL Q+ L+NA + +G + + +N G FSV Sbjct: 335 KVKSYFTSDVPNDYLFVTDKERLQQVLINFLTNAEKHTERGEIHLHCSLTENPGKITFSV 394 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G IP D VF+RF Q G GLGL+I G V + + G Sbjct: 395 ADTGPGIPADQADCVFDRFSKLDEFKQ--GTGLGLNICSIIAGRLKGEVKLDKNYTG 449 >gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 300 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 20/251 (7%) Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P P A +L + ++T+ + + AL + EA D++KN+F+ ++S+E+R+PL I+G Sbjct: 28 PDPGASPLLLVMLNDITEQRQDQLALMKVQEA----DKMKNAFIANMSHEIRTPLNAIVG 83 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F L+ + S +Q +Y I+ + +LL L+NDILDL+ +++G + N S + L D Sbjct: 84 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 140 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706 + E + KM + + ++ + V D R+ Q+ +LSNA+ F+SKG Sbjct: 141 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 197 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + D F+ SV + G I E+ +SVF RFV Q G GLGL I + + Sbjct: 198 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 253 Query: 766 NLHGGHVSISS 776 GG + + S Sbjct: 254 EQLGGEIGVRS 264 >gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] Length = 660 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 9/245 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ LL S S + +Y Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINSVEPS--EELQEYA 473 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669 I +S +LL L++D+LD++ +++G ++ NY ++ N + + K ++R+ Sbjct: 474 NIIQTNSNLLLQLISDVLDVSRLESGKLQFNYEWCELVTHCQNMITLTNRNKTTNADVRL 533 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727 ++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + G Sbjct: 534 QMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTG 591 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + IPED + VF RF Q G GLGL+I + I GG + I +G Sbjct: 592 TGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKDYKGGARFIFS 649 Query: 788 IPSKE 792 P KE Sbjct: 650 HPIKE 654 >gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171] Length = 917 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ ++ +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MSPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731 L + V D RL QI + ++SNA+ F+ +G+ V I D+ SV++ G + Sbjct: 391 PL-ALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 450 NQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|83310531|ref|YP_420795.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945372|dbj|BAE50236.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 631 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 19/254 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E L E ++ +A K+ F+ + +E+R+PL ++G LL + L+ +Q + Sbjct: 132 GEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLET---DLDPRQKSFA 188 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + +S +LL LVNDILD + +DA M L + D + EV+ +A++ E ++ + Sbjct: 189 ETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLASRAAEKDLALS 248 Query: 671 VISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FS 722 + G+ V DR RL QI ++ NA+ F+ +G I A + G + FS Sbjct: 249 C----RFGAGVRRVVSGDRLRLRQILFNLVGNAIKFTDRGGVEIGVEPLAVEQGQILRFS 304 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDE 779 VK++G I ++ +F F RR G GLGL+I + +L GG + S D Sbjct: 305 VKDSGIGIAPEIGAQLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGVIGYDSLPDR 364 Query: 780 GVT-TINCRIPSKE 792 G T ++ +P E Sbjct: 365 GSTFRVDLPLPPAE 378 >gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 748 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 11/222 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 KA+E K+ F+ ++S+E+R+PL +IGF++LLK + + K Y+E I+ + LL Sbjct: 436 EKANEAKSEFLANMSHEIRTPLNAVIGFSELLKNT---IKDEKHKSYIETINVAGNSLLT 492 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILDL+ ++AG ++L Y + L+++ E+K K NI + I + S + Sbjct: 493 IINDILDLSKIEAGRIELQYKPLKLSNIFREIKYIFKQKTKSKNIEFLLDIQEDFDESIL 552 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA----RDNGDFIFSVKNNGSSIPEDMCK 736 D R+ QI ++ NA+ F+ KG + LK + + DF S+++ G I E + Sbjct: 553 LDEVRIRQILLNLVGNAVKFTDKGYVKLSLKGTTSQNKSSVDFRISIEDTGIGIAEGERE 612 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+ F + + ++ G GLGLSI + + G + + S Sbjct: 613 KIFDAFKQASGQSIKKFGGTGLGLSITKKLTEIMQGKIFVES 654 >gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 879 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 370 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L + V ++ SS++LL +++DILD + +++ +K+ ++++ + + Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 486 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D RL Q+ S +LSNA+ F+ G ++L RD+ Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVQRDS 545 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 V++ G IP +F+ F QR +G GLGL+I E I++ G +S+ Sbjct: 546 DYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISV 605 Query: 775 SSSDEGVTTINCRIP 789 S + RIP Sbjct: 606 DSEPGMGSQFTVRIP 620 >gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] Length = 1145 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +A A+ + + + +A K+ F+ ++S+ELR+PL + + LL + +L ++Q Sbjct: 454 DLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADENLTAEQ 513 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN- 665 ++ + I +S LLNL+NDILDL+ ++AG ++++ + +N ++ ++Q + Sbjct: 514 VKFAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQLFDPLAAQKG 573 Query: 666 -NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N+ I+V D + S + D QRL Q+ +L+NA+ F+++G +L + SV Sbjct: 574 LNLSIEVAPD--VPSVIETDPQRLEQVLKNLLANAVKFTAEGQVSLLVRPAGDAQIAISV 631 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I ED +++F F R+ G GLGLSI + L GG + + S Sbjct: 632 VDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHLQSRPGTG 691 Query: 782 TTINCRIP 789 +T IP Sbjct: 692 STFTVIIP 699 >gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 639 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 134/243 (55%), Gaps = 8/243 (3%) Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 M T +N++D AE NE L++ D +K+ + VS+ELR+PLT+I G+ +L+ Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G++N Q + ++ + L L+ +LDL+ ++ G +++ + + +++ +V Sbjct: 440 DGTMGAINDSQRKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIVGDVI 499 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 Q + E NI++ + + + AD+ R+ Q+ + ++ NA+ FS ++++ + Sbjct: 500 QYLKPLATEKNIKLN--KNVEKITLEADKDRITQVLTNLIENAIKFSPANESILVNGTLE 557 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + V ++G+ IP+ + VF+RF V ++ + ++ G GLGL++ +S + HGG + Sbjct: 558 DEGLHLKVTDHGAGIPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHGGSIW 617 Query: 774 ISS 776 + S Sbjct: 618 VES 620 >gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes] Length = 624 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI---IGFTDLLKTSKLGSLNSKQS 607 E+ + NE+ R+ +++ F+ ++S+EL++PL I + DL K K G+ K+ Sbjct: 347 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYK--KDGNSYDKKE 403 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY++ I + L+ L+N++LD +D+G +KLN + +L+ E+ S+ +I Sbjct: 404 QYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLIEEITLSVVYYAESKDI 463 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 I +D + D ++ +I +LSNA+ F+ G + + SVK+ G Sbjct: 464 NIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIKDCKDSITISVKDTG 523 Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+D +++F RFV R + G G+GL +V+SF+N+H G + I S Sbjct: 524 IGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 574 >gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 785 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 137/268 (51%), Gaps = 13/268 (4%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF++LL +++ ++ Y I+ +S ILL L+NDILDL+ ++AG ++ + Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704 L ++ + Q ++ E + +I D + + DR R+ Q+ + L+NA F+ Sbjct: 501 LGEICRNIYQIHKDRVQEG---VTLILDNQDEDLIIEEDRNRIAQVITNFLTNAGKFTLS 557 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 G + +N F VK+ G I D +F+RFV Q G GLGL+I Sbjct: 558 GE-IRFGFKVNNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP KE Sbjct: 615 IEKIGGEIGVTSEIGKGSTFYFTIPYKE 642 >gi|32473732|ref|NP_866726.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32444268|emb|CAD74266.1| probable sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 574 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +KNE L K V +VS++LR+PLT I + +++ +G +N +Q++ + I Sbjct: 203 LLQKNEKLEKLYATSQEIVDNVSHDLRTPLTVIKDYVAIIRDGLVGDVNQEQAEMLSKIL 262 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + L +V+D+LD + ++AG++ L+ TI L+ ++ V +A + + + +++ + Sbjct: 263 GRADDLNGMVDDLLDKSKLEAGLLHLSRRTIGLDSIIQRVHMLVANRANTKQVSLQLEAA 322 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIP 731 DG++ + D +++ ++ + + +NA+ F +G V + K + + D + V ++G I Sbjct: 323 DGEIEVY-CDAEKITRVITNLATNAIKFVPQGGNVCIRTKLSSNGEDALVEVVDDGPGIE 381 Query: 732 EDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776 K +F RF +H G Q GVGLGL+I + L+ G + + S Sbjct: 382 SAELKKIFGRFEQASHNGTKQNSGVGLGLNIAQKLATLNFGSIDVDS 428 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 34/291 (11%) Query: 532 PLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELR 581 P+ A L V VTD +AE L NE L KA+ +K+ F+ ++S+ELR Sbjct: 513 PITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELARATRLKDEFLANMSHELR 572 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PL I+G ++ G++N KQ++ + I S LL L+NDILDL+ +++G ++L Sbjct: 573 TPLNAILGMSEGFIEGVFGAINQKQAKAIATIKRSGKHLLELINDILDLSKIESGKLELQ 632 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 S + + + + I + NI + L + D +RL Q+ +LSNA+ F Sbjct: 633 ISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNLDTIQVDDRRLRQVLINLLSNAVKF 692 Query: 702 SSKGSTV--------------------ILKAARDNGDFIFSVKNNGSSIP-EDMCK--SV 738 + +G V I +++ + F V + G I ED+ K Sbjct: 693 TPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSPHICFRVTDTGIGIASEDISKLFQP 752 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F + S+ +R G GLGL++V+ LHGG + ++S + RIP Sbjct: 753 FTQLDSSLNRN-YTGTGLGLALVKRITTLHGGTILVNSEVGQGSCFTVRIP 802 >gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869] Length = 785 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+R L +K E L K+ F+ ++S+ELR+PL +++ + L + G+L+ +Q Q+ Sbjct: 98 AKRELEDKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLGENSAGNLDERQVQFA 157 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--R 668 + I + + LL L+N+ILDLA +++G M +N + + D+ V++S E + R Sbjct: 158 QTIHQAGSDLLTLINEILDLAKIESGTMHVNPAELPFRDIKEYVERSFEHVADERGLWFR 217 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-------NGDFI 720 +++ +D + D RL QI +LSNA F+ G T+ ++ A D D + Sbjct: 218 VEIAADVP-ETIETDEMRLKQILRNLLSNAFKFTEHGGVTMRMRPATDPTRTTLLGADAV 276 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +V++ G I + + +F F RR G GLGLSI L GG V + S Sbjct: 277 AIAVEDTGIGISPEQQRLIFEAFQQGDGGTARRYGGTGLGLSISRELARLLGGWVEVGSE 336 Query: 778 DEGVTTINCRIPSK 791 +T +P + Sbjct: 337 MGKGSTFTLYLPRR 350 >gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1196 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 8/254 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++V+D V+ L E E A + K F+ +S+E+R+P+ IIG +L K Sbjct: 680 WIDVSDRVKLMAQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLEL--AIKRSH 737 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 N + S+ LL L+ DILD+ ++AG + LN + I L ++ Q Sbjct: 738 ENQFDFNSIRVAHDSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTISSTIQIFEGI 797 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716 E + +K+I D KL +V D RL QI S ++SNA+ F+++G + + + Sbjct: 798 ALEKKLPLKLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFTNQGMVTVSAEQQLELNEQ 857 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + V + G I +D + +F F H + G GLGL+I S ++ GG + + Sbjct: 858 MYLLLKVSDTGIGISKDDQQKLFRPFAQVQHGADNKGGTGLGLAICSSLCDMMGGELRMI 917 Query: 776 SSDEGVTTINCRIP 789 S E TT++ R+P Sbjct: 918 SEPEQGTTLSMRLP 931 >gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 614 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621 K ++ + FV +VS+ELR+PLT I + + L G+L+ ++ ++V I + ++ Sbjct: 378 KLEQSRRQFVANVSHELRTPLTTIKSYAEALND---GALDERELSERFVGVIRNETERMI 434 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L L+ +D+ L ++++L+EV + ++ + +I +I D L S Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 DR ++ Q+ ++SNA+ ++ +G + L A +D SVK+ G IP+ +F+ Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFD 554 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSI + HGG +S+ S TT+ +P Sbjct: 555 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLP 605 >gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1603 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 11/239 (4%) Query: 549 VRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++ ER EK NE L++ D++K+ F+ + S+ELR+PL IIG ++ L + L+ Sbjct: 880 LQQEREQLEKERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSEALLEDE---LDP 936 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 ++ + + +S L +LVNDILD + + ++L+ I L+ + + V ++I+ + Sbjct: 937 ERKANLTMVVSSGKRLNSLVNDILDFSKLKNADIELDLRPISLHSMADVVLKNISPLVAG 996 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +I + + AD RL QI +L NA+ F+ G I RDN D + V+ Sbjct: 997 KSIELLNSVSVDFPAASADENRLQQILYNLLGNAVKFTESGYIKIDALERDN-DLVVCVE 1055 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEG 780 + G IP D ++F F R G GLGLSI + + LHGG + + S D+G Sbjct: 1056 DTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTGLGLSISKRLVELHGGTMWLESEIDQG 1114 >gi|256004073|ref|ZP_05429058.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281419091|ref|ZP_06250108.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|255991996|gb|EEU02093.1| histidine kinase [Clostridium thermocellum DSM 2360] gi|281407240|gb|EFB37501.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 430 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599 +R L EKNE +R K+ K+ F ++S+EL++PL+ I+G L+ K Sbjct: 142 QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 201 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G+ K ++++ I + LL L+N+ILD++ +D+G +K N + L+ ++ S+ Sbjct: 202 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 261 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + ++ + + D ++ +I +LSNA+ F++ G + +K A+ Sbjct: 262 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 321 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I VK+ G IP++M ++F R+ V N + G G+GLSIV+SF+ LH G + + S Sbjct: 322 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 381 Query: 778 D 778 + Sbjct: 382 E 382 >gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 696 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL EK+E ++ ++ K F+ ++S+E+R+P+T I+G T+LL + LN Q +E Sbjct: 308 QALKEKSEIAQQENQAKTVFISNISHEIRTPMTGILGITELLLNT---PLNPDQKDSLEL 364 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL +VN +LD + D G ++L + +LLN++ + T++ +N + ++ Sbjct: 365 IQRSGDKLLKIVNHLLDFSKADTGKIELESIPFNMQELLNDLVSLLRTEILKNKNELNIL 424 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727 + D R+ QI + ++SNA F+ +G+ IL+ F V + G Sbjct: 425 FPPNFPKLLKGDPVRIGQILTNLVSNATKFTKEGTVEVGFHILEKTNSELSFRTWVFDTG 484 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP SVF FV + R G GLGLSI + I L GG + + S Sbjct: 485 IGIPPTKFNSVFEPFVQSDKSITRHFGGTGLGLSITKKLIELMGGKIHVES 535 >gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces griseoaurantiacus M045] Length = 478 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 8/239 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYI 613 L E LR + F VS+ELR+PL + T LL + G L + S+ + + Sbjct: 244 LQEDAATLRAMEARARRFAADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLV 303 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + L +LV D+++++ DAG +L+ I L +LL+ +++A + ++ + + V Sbjct: 304 ADETRKLAHLVEDLMEISRFDAGAARLDLDEIDLGELLH---KTLALRHWQDRVTVDV-- 358 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 G L + + D +R+ + + + NA+ G+ V ++A + + +V +NG I ED Sbjct: 359 PGGLRARL-DPRRIDVVLANLTGNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAED 417 Query: 734 MCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 M VF+RF + R + G GLGL+I LHGG ++ ++S EG +P + Sbjct: 418 MLPHVFDRFTKGDTARTRSEGSGLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPRE 476 >gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 850 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 11/259 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L ++ S R R L E K F+ ++S+ELR+PL +IIG+ + L+ Sbjct: 327 LLILSDIRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDE- 385 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + + S+ V I SS LL +VN++LD +++G N L+ L+ EV ++ Sbjct: 386 ----HPEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAM 441 Query: 659 ATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716 + E ++ + + + + G D R+ QI +LSNA+ F+ +GS T+++ A N Sbjct: 442 QLQAEEKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKN 501 Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + +V++ G IPE +FN F N++ G G GLGLSIV++ GG++ Sbjct: 502 ELTELRITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNI 561 Query: 773 SISSSDEGVTTINCRIPSK 791 I S +T + IP K Sbjct: 562 RIKSQLGKGSTFDVFIPLK 580 >gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 352 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 9/219 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620 RK D++++ FV +VS+ELR+PLT I GF + L G+L K +++ I + L Sbjct: 123 RKFDQMRSEFVANVSHELRTPLTAIKGFVETLLD---GALEDKLICRRFLTIIEGENNRL 179 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L++D+L L+ +++ KL + L + +V + + E + +++I + L Sbjct: 180 TRLIDDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPV 239 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739 AD + Q+ ++ NA+ ++S G ++++ R GD +F S+ + G+ IP++ +F Sbjct: 240 KADEDLVGQVLINLIDNAIKYTSPGGKIVIRVKR-GGDQVFTSITDTGTGIPQESLPRLF 298 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A + G GLGL+IV+ + HGG V + S Sbjct: 299 ERFYRVDKARSRELGGTGLGLAIVKHIVESHGGEVFVES 337 >gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 785 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 13/268 (4%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF++LL +++ ++ Y I+ +S ILL L+NDILDL+ ++AG ++ + Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704 L ++ + Q ++ E + +I D + + DR R+ Q+ + L+NA F+ Sbjct: 501 LGEVCRNIYQIHKDRVQEG---VTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS 557 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 G + DN F VK+ G I D +F+RFV Q G GLGL+I Sbjct: 558 GE-IRFGFKVDNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + +S +T IP KE Sbjct: 615 IEKIGGEIGATSEVGKGSTFFFTIPYKE 642 >gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 914 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ +S+E+R+PL ++G LL+ + L + Q YV+ IS+S + L+ ++ND Sbjct: 406 QAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQRFYVDTISSSGSSLMAVIND 462 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685 ILD A +++G + L L D+++E + + +R+ V +G + + D Sbjct: 463 ILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLEGGVPRRIQGDPT 522 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNR 741 RL Q+ +LSNA+ F+++G + + R + +F+V ++G I E +F Sbjct: 523 RLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGQPHLVFAVSDSGIGISEQALAKLFES 582 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F RR G GLGL+I + + + GG + + S+ T IP E Sbjct: 583 FAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGTRFAFDIPLLE 635 >gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 ++EA R A +K+ FV +S+ELR+PL I+G+ LL + S ++ + ++ I ++ Sbjct: 297 RSEAER-ASRLKDEFVATLSHELRTPLNAIVGWAQLLL--RDASDPARVEKGLQVIHRNA 353 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + +++D+LD++ + AG ++LN + L D++ +V ++ +R+ + G Sbjct: 354 RLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAADAKELRVMPVL-GAP 412 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QI +L+NA+ F+ + V + +G+ V + G I E Sbjct: 413 AVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLTSGDGEARLVVSDTGCGIREAFLPH 472 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 VF RF R+ G+GLGLSIV+ + +HGGH++ +S E Sbjct: 473 VFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGE 516 >gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103] gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103] Length = 949 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ VR E++L E A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 443 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLP- 501 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S V ++ SS++LL +++DILD + +++ +K+ +++ + + + Sbjct: 502 --SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSL 559 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + I + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 560 VVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGC-IILHAYVTQGYLA 618 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F ++ G IP +F+ F + QR +G GLGL+I E IN+ G + + S Sbjct: 619 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 678 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 679 GMGSQFIVRIP 689 >gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110] Length = 569 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 16/252 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + +Q +++E Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAQEQQEFLEE 364 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670 S+ LLNL+NDILD+A ++AG M L ++ L +L V + ++ R K Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF----- 721 + S + QRLLQ+ ++SNA+ F+ +GS V I+K D F Sbjct: 425 LPSTLTPIMVYGNYQRLLQVMFNLVSNAIKFTHEGSIVVNAEIVKKKIKYQDQEFPGLVK 484 Query: 722 -SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + D +F +FV +H G GLGL+I + + GG V S Sbjct: 485 VSVTDTGIGVSLDQQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVQAMGGQVEFYSMG 544 Query: 779 EGV-TTINCRIP 789 EG+ +T+ +P Sbjct: 545 EGLGSTVTFTVP 556 >gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 1748 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T++ E+ L E +A +K+ F+ ++S+E+R+P+ ++G L++ ++L + Sbjct: 1002 DITETRAYEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRL---D 1058 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YV I A++ LL L+NDILD + +DAG ++L+ L L+ E+ ++ + Sbjct: 1059 ERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGNTN 1118 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--D 718 + ++ + + L + + D+ RL QI + NA+ F+++G V + + AR G + Sbjct: 1119 DKDVEVLFRMEPTLPAMLIGDKLRLQQILINLAGNALKFTTQGQVVLAVRERARREGEVE 1178 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G I + +F F RR G GLGL I + L GG + + S Sbjct: 1179 LRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLRVES 1238 >gi|289582943|ref|YP_003481409.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] gi|289532496|gb|ADD06847.1| multi-sensor signal transduction histidine kinase [Natrialba magadii ATCC 43099] Length = 838 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 14/267 (5%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 LE +I P ++ F +VTD +R L E NE L + F S++L+ PL Sbjct: 566 LEVTIYPSETGSSVY-FRDVTDRREYQRRLEESNERLEQ-------FAYAASHDLQEPLR 617 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 + + DLL+T L+ ++++Y + + ++N +L+ + ++ + + Sbjct: 618 MVSSYLDLLETRYADELDEDAQEFIDYAVDGAERMRQMINGLLEFSRIE--TQGEPFEPV 675 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L+++L +V + + K+ EN+ I S +L D +L Q+F +LSNA+ +S + Sbjct: 676 DLDEVLEDVMRDLRVKIVENSADI---SAAELPRVAGDGNQLRQVFQNLLSNAIVYSGEE 732 Query: 706 STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 I A D G +++ SV +NG I D + +F F G+ G G+GL++ E Sbjct: 733 PPEIDIQAHDTGSEWVISVSDNGVGIDPDDTEQIFGLFERRHSGGEHTGSGIGLALCERI 792 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791 I HGG + + S T + +P++ Sbjct: 793 IERHGGEIWVDSEPGEGATFSFTLPTR 819 >gi|87308804|ref|ZP_01090943.1| PAS protein [Blastopirellula marina DSM 3645] gi|87288515|gb|EAQ80410.1| PAS protein [Blastopirellula marina DSM 3645] Length = 1373 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 15/241 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD + AE+ EA R A ++ F+ +S+ELR+PL + T +L +L+ Sbjct: 991 DITDRINAEK------EA-RAAVNNRDQFLAMLSHELRNPLGATLTATYVLDLEP--NLS 1041 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--K 661 + + I + L++D+LD++ V G +++ + L L+ +V Q++A + Sbjct: 1042 PDVREVCDVIQRQTLQAARLLDDLLDVSRVMRGKIEIRPQVVDLRTLVEDVTQAVAPLIQ 1101 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E+N+ I+V L D RLLQI +L+NA +++ G + +R++G+ + Sbjct: 1102 AREHNLVIEVPETPVL--VEGDPTRLLQIQENLLANAARYTAPGGEIRFSLSREDGEAVN 1159 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 VK+NGS IP M + +F FV + R G+GLGL++V++ + LHGG VS S Sbjct: 1160 RVKDNGSGIPPHMLERIFELFVQSDDTLDRTDGGMGLGLTLVKTLVELHGGRVSAHSDGP 1219 Query: 780 G 780 G Sbjct: 1220 G 1220 >gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 585 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 22/245 (8%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------------KTS 597 A + L+E N L++ D+IK+ F++ VS+ELR+P+T+I+GF L+ + Sbjct: 325 AAKELSEANVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNE 384 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 KL + + ++ + L L+ND+LD A +++G MK + +ND+L + Sbjct: 385 KLKKKTERIMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVST 444 Query: 658 IATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I ++ I + V+ +D AD RL+Q+ +LSNA+ F+S G + + Sbjct: 445 IKGQL---PIGVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFTSNGYVSVSYESSL 501 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + +VK+ G IP+ + VF+RF N + + +G GLGLSI + ++ +GG Sbjct: 502 SNILTVTVKDTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGK 561 Query: 772 VSISS 776 + + S Sbjct: 562 IWVES 566 >gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 677 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ ++S+E R+PL I+GF+ LL + + Q ++ I S LL+LV Sbjct: 180 ANQAKSKFIANMSHEFRTPLNAIMGFSQLLLRDR--RITPDQQSRLDVIYRSGEHLLSLV 237 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 N+++ L+ ++ G++ + L L VK+ + + +I++++ + F+ D Sbjct: 238 NEVITLSKIEDGVLTYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIRTD 297 Query: 684 RQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG---DFIFSVKNNGSSIPEDMCKS 737 Q+L QI +L NA+ ++ +GS V + R FS+++ G IP+ + Sbjct: 298 AQKLRQILINLLGNALKYTKRGSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLPK 357 Query: 738 VFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F FV + R + G+GLGL I + F++L GG +SI S+++ T ++ I Sbjct: 358 LFEHFVQDPLTRDKFGGIGLGLCICQRFVHLMGGDISIESTEDHGTIVDFYI 409 >gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 813 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 D R++R + EA A+ + + F+ ++++LRSPLT ++G+TDL++ + LN Sbjct: 291 DVTRSQRYRVQLEEAKEFAESLLASREQFMAAITHDLRSPLTTVMGYTDLIQKT---DLN 347 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ Y+ I SS +L LVND+LDL+ ++AG M + + +L+ + +I Sbjct: 348 EKQKHYLTQIKKSSEFILRLVNDLLDLSKLEAGKMLVEKLSFNPKNLIKDTVNNIIPAEK 407 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718 + +++I++ +S +D R+ QI + ++SNA F+ KGS +I +++ +N Sbjct: 408 KKDVKIQIEVSKETNVQIQSDPFRIKQILANLISNAWKFTEKGSILIAAKLQESSTENHI 467 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 VK++G I ++M S+F F ++R G GLGL+I + L G + ++S Sbjct: 468 LEIRVKDSGIGISKEMQASIFEEFSQENSSIEKRFGGSGLGLAITKRLTELLEGKIKVNS 527 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VT + L + +A A+ K+ F+ ++S+E+R+P+ +IG T+LL + + Sbjct: 517 LTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDT---T 573 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+++Q +Y+ + +SS LL ++NDILD + ++AG M + L + + +++ + Sbjct: 574 LDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLR 633 Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG 717 H+ + + V D + V D RL Q+ IL NA+ F+ +G V I + NG Sbjct: 634 AHDKGLEVVWDVAPDVPR-ALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNG 692 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + +V + G IP + S+F+ F R+ G GLGL+I + GG + Sbjct: 693 KPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 752 Query: 774 ISSS 777 + S+ Sbjct: 753 VEST 756 >gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1499 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 14/251 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKT 596 F +++ AE+AL E A+E+K+ FV ++S+E+R+PL+ I+G D+ L Sbjct: 1030 AFQDISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVALSRLND 1089 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + L + +++Q Y+ I S LL+++ND+LD + ++AG + L+ L +++ Sbjct: 1090 TALPAHDNEQGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALA 1149 Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI------ 709 +A + + + V D + + D RL QI + NA+ F+ + + Sbjct: 1150 PLAVQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRR 1209 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 + R G F+V++ G I D +F F +H + G GLGL+I + Sbjct: 1210 SAQCPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAISRHIVR 1269 Query: 767 LHGGHVSISSS 777 L GG + ++S+ Sbjct: 1270 LQGGDIGVNST 1280 >gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 780 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 8/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ RAE L E A+ K+ F+ +S+E+R+P+ +I+G +LL S L Sbjct: 378 DVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSES---PLT 434 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Y++ + LL L+NDILDL+ ++AG ++L L +LL V + Sbjct: 435 PEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLAR 494 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720 E + +++ ++ + DR RL QI ++ NA+ F+ GS I K++ D + + Sbjct: 495 ERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATNLL 554 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V ++G I E SVF RF R G GLGL+I + L GG + + S+ Sbjct: 555 FHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKSA 613 >gi|311032689|ref|ZP_07710779.1| two component system histidine kinase [Bacillus sp. m3-13] Length = 933 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 131/261 (50%), Gaps = 16/261 (6%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 +D +A+ L EK + L+ + + K+ F+ ++S+ELR+PL +I+ +++L L + Sbjct: 491 SDLQKAKTELEEKAKQLQLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPEDQLTDE 550 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++ I++S LLNL+NDILDL+ V+ +++ + + + + +N ++ Sbjct: 551 QREFSRVINSSGQDLLNLINDILDLSKVEVKKLEVMFGEVNVEEFINRLELQFTHIAKHK 610 Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDN------ 716 + +++ +L F D QRL QI +LSNA F+ +G S I KA + + Sbjct: 611 KLNYEIVRGNQLPDVFFTDEQRLQQIVKNLLSNAFKFTEQGKVSVKIEKAPKRDLLRANV 670 Query: 717 ---GD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 D SV++ G I +D +F F R+ G GLGLSI + F NL G Sbjct: 671 NVKADTWLKISVEDTGIGISKDKQSLIFEAFHQGDGATMRKYGGTGLGLSISKEFSNLLG 730 Query: 770 GHVSISSSDEGVTTINCRIPS 790 G V + S + + IPS Sbjct: 731 GSVFVESEEGEGSVFTLLIPS 751 >gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510] gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510] Length = 781 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 21/271 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L ++D +K +F+ ++S+E+R+PL Sbjct: 380 TLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNA 439 Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+GF+ L+ + N++ + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 440 IVGFSHLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550 Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760 + KG R+ ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637 >gi|307152409|ref|YP_003887793.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982637|gb|ADN14518.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 667 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 126/273 (46%), Gaps = 58/273 (21%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI------LLNL 623 ++F+ +S+ELR+PL I+G + LL ++++ Y+E+I I LL+L Sbjct: 390 SAFLASMSHELRTPLNGILGLSQLLLE------DAEEEGYIEFIDDLKQIHQSGLHLLSL 443 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + DILD++ ++AG M L T L L+NEVK +I + +NN ++V LG+ VAD Sbjct: 444 IEDILDISKIEAGKMTLYPETFDLPVLINEVKNTIQPLIKKNNNTLEVKLSNALGAMVAD 503 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------------------- 718 R+R+ QI +LSNA F+ G +IL R D Sbjct: 504 RKRVKQILLNLLSNAAKFTDHGQ-IILTVTRQEKDHLITAESSPQTNGNQSPKMNQINGY 562 Query: 719 ------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 IFS+ + G + + +F FV ++ G GLGL Sbjct: 563 ASPPTQATVSDISASSDWVIFSISDTGIGMTTEQMNKIFQPFVQADSSTTKKYGGTGLGL 622 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SI + F + GG +S++S +T + +P++ Sbjct: 623 SICQRFCEMMGGSISVNSEVAVGSTFSVSLPTR 655 >gi|306842152|ref|ZP_07474821.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO2] gi|306287739|gb|EFM59170.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO2] Length = 522 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 7/228 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 242 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 301 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 302 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 361 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 QI + +NA+ F+ G V + AAR D G + FSV + G I + + + FV Sbjct: 362 QQILLNLATNAVKFTQSGGCVTIDAARVMADGGPMLEFSVSDTGIGIDLEDLQRIGTPFV 421 Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N++ + G GLGLS+V+ + LH G + + S T + R+P Sbjct: 422 RAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 469 >gi|298291052|ref|YP_003692991.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927563|gb|ADH88372.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 530 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 20/248 (8%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L D + F VS+ELR+PLT I+G ++ +L Q + + + Sbjct: 280 LRAANTRLENVDLARRRFFTDVSHELRTPLTVILGEAEI-------TLRPAQPREEDLRA 332 Query: 615 ASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 A TI L V D+L +A ++G ++L+ S ++ DL+ ++++S+ + Sbjct: 333 ALLTIQSRARRLHRRVEDLLRIARSESGQIELDRSFFLVCDLITDLRESMQPVARAAGLT 392 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ ADR L Q F +++NA+ S G TV ++AAR+ GD + V ++G+ Sbjct: 393 LETACMPDDLVIDADRDWLRQTFDGLIANAVRHSPPGETVRVEAAREAGDVVIRVSDHGT 452 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS------SDEGVT 782 IP D VF RF A R + G G+GL++ + ++ HGG + I S G T Sbjct: 453 GIPSDDLPHVFERFWRGAAR-EGTGFGIGLALAKWIVDRHGGRIEIDSRVADGEGRRGGT 511 Query: 783 TINCRIPS 790 + R+P+ Sbjct: 512 CVTVRLPT 519 >gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 781 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 21/271 (7%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++PL ++ + ++T+ E+ L ++D +K +F+ ++S+E+R+PL Sbjct: 380 TLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNA 439 Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+GF+ L+ + N++ + Y + I+ +S ILL L+NDILDLA ++AG ++ + Sbjct: 440 IVGFSHLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701 L +L V + MH++ ++ V I D K S + D+ R++Q+ + +++NA+ F Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550 Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760 + KG R+ ++I F VK+ G I E+ K +F RFV Q G GLGL+I Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG ++ S +T IP K Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637 >gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 947 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 39/272 (14%) Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590 V + +R+E AL + LR A K+ F+ ++S+E+R+P+ +IG+ Sbjct: 561 VDERIRSENALRRSEDELRAAKIEAERLAREAEAASRTKSEFLANMSHEIRTPMNAVIGY 620 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +DLL + + +Q Y++ I A S LL L+NDILDL+ ++AG M+L+Y+ + + + Sbjct: 621 SDLLSNT---VTDPQQRNYLDAIRAGSRALLMLINDILDLSRIEAGKMRLDYAPVSMRRM 677 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 L +V + + + ++V K+ + + D RL Q+ + NA+ F+ +G TV Sbjct: 678 LGDVLHIFDLRARDQGVTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAIKFTHEGGVTV 737 Query: 709 ILKAAR----------DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 KA+ G+ +V + G I D + VF+ F + R Sbjct: 738 RAKASPLPKQSYPPGTKPGEPEHPRYRLEITVTDTGIGIATDQQERVFDAFEQQEGQNSR 797 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSS-DEG 780 R G GLGL+I + GG +++ S+ DEG Sbjct: 798 RYGGTGLGLAISRKLALMMGGELTLKSTLDEG 829 >gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 604 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 3/219 (1%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E+K S + VS++LR+PLT++ LL ++G+LNSKQ++ + S L ++++D Sbjct: 375 ELKRSVIATVSHQLRTPLTSLRMSIYLLLEERIGTLNSKQAELLLAAREESERLSHILDD 434 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQ 685 +LDL +++G LN L E + + + + + +G + +AD + Sbjct: 435 LLDLNRIESGKAHLNIQPASPFRLATEGVDPFTAEARDKRVNLVNTVPEG-VSEVMADPE 493 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 R+ +F+ +LSNA+ F+ ++ + A D + FSV N+G I + + +F +F Sbjct: 494 RIRHVFANLLSNALRFTPPDGSITVSACEDEDNVRFSVANSGEGIASEHLEHLFEQFYRV 553 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G+GLGLSIV+ + HGG V + S+ G +I Sbjct: 554 PGQRDESGIGLGLSIVKEIVEAHGGTVG-AESNPGTGSI 591 >gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 841 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 29/259 (11%) Query: 542 FVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSP 583 F ++T+ + ER L +E L + A++ K++F+ ++S+ELR+P Sbjct: 346 FSDITERKKTERELASHHERLEEQVRERTEELSVARDQAEAANQSKSAFLANMSHELRTP 405 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +IGF+ L++ K L Q + +E I+ S LL L+NDIL+L+ +++G +++ Sbjct: 406 LNAVIGFSQLME--KDPGLLPVQQRNLEIINHSGRHLLTLINDILELSKIESGKLRMTTE 463 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L LL +V + + + + +++K+ + V D QI +LSNA+ F+ Sbjct: 464 ETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPPLIVIDPGMFRQILLNLLSNALKFTP 523 Query: 704 KGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 KG + AA FSV++ G I E+ + +F+ F V H+G G GLG Sbjct: 524 KGEVCLHVAAEAVSAQQSRIRFSVRDTGIGISENDRERIFSSFEQVGPMHQG---GTGLG 580 Query: 758 LSIVESFINLHGGHVSISS 776 L+I ++ + GG +S+ S Sbjct: 581 LTISRRYVEMLGGELSVDS 599 >gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 708 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 6/237 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T + EA A+ IK+ F+ +S+ELR+PL I+G++ LL+ KL ++ Q + I Sbjct: 324 TARAEA-ETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLEP--ARTFQALATIER 380 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 ++T+ + L+ D+LD++ + G + +N + + L ++ +++ I++ Sbjct: 381 NATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETMRLAAESKLIQVSTNFPS 440 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K+G + D RL Q+ +LSNA+ F+ KG + + + +G V + G I + Sbjct: 441 KMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKVDGYAQIVVSDTGKGIKPEFL 500 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789 VF+ F RR G+GLGL+IV + +HGG V+ S +E + R+P Sbjct: 501 PYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557 >gi|158312523|ref|YP_001505031.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158107928|gb|ABW10125.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1400 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 18/254 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EK E L + + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ + E I Sbjct: 869 GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETI 928 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ + LL L+NDILDL+ V+AG M ++ + L + V E + ++ + Sbjct: 929 HSAGSELLGLINDILDLSKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISV 988 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI---------- 720 ++ FV D QR+ Q+ +LSNA+ F+ G TV L A + D F+ Sbjct: 989 TEDVPDEFVTDEQRIQQVLKNLLSNAVKFTDAG-TVRLDVAVASPDTPFVAPSLRSAPMV 1047 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+V + G + + + +F F RR G GLGLSI + L GG +++SS Sbjct: 1048 LSFAVTDTGIGVAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1107 Query: 777 SDEGVTTINCRIPS 790 +T +PS Sbjct: 1108 QIGQGSTFTLFVPS 1121 >gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM 12442] gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM 12442] Length = 449 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 12/236 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR +++++ FV +VS+E +SPL++I GF+ L+T+ L S+Q+ Y+E I + S + Sbjct: 211 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDL--TKSEQTHYLEIIESESRRMS 268 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGKLG 678 +L +L LA++D + L + DL N++K +I M E R K ++ D Sbjct: 269 SLCKQLLILASLDKEDLTLRKQSF---DLGNQIKDTIF--MLEWEWRTKELAVEMDVPNM 323 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D L Q++ + +N++ F+ G T+ +A ++ S+ + G IPE+ K + Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F+RF V A G GLGLSIV+ I+LH G +++ S T + +P ++ Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPKQQ 439 >gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 667 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 11/245 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L K+EA A+ K+ F+ ++S+E+R+P++ +IG LL +L LN++Q+ Y+ Sbjct: 275 EELLQAKSEA-EAANTAKSEFLANMSHEIRTPMSGLIGNAQLL---RLTQLNAEQTGYLT 330 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670 I + L++L+ND+LD++ ++AG ++L + L + ++ +S ++ I + Sbjct: 331 NIETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTH 390 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726 I+ S D+ RL QI ++ NA+ F++KG + L+ D F FSV + Sbjct: 391 EIAADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVELLERHDDKARFCFSVTDT 450 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + + +F F+ RR G GLGLSI + GG +++ S + +T Sbjct: 451 GIGIRPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTF 510 Query: 785 NCRIP 789 + +P Sbjct: 511 SVTLP 515 >gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 785 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 535 NAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 A+ +L ++TD V E E+ EA+R + K+ F+ ++S+E+R+PL I+G T+L Sbjct: 106 GAEVLLGVFDITDQKVTEEHLRKEREEAIRSV-QSKSRFLANMSHEIRTPLHTILGMTEL 164 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ ++ L+ +Q YV+ I S LL L+NDILD + ++AG + + L +++ + Sbjct: 165 LEDTR---LDEEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQ 221 Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709 ++ + H+ ++ + V I + D R+ QI + +NA+ F+ KG V Sbjct: 222 AVGMVSLQAHKKHLEVVVDIGEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQ 281 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 L R ++ F+V++ G IPE+ +F F RR G GLGL+I +S + Sbjct: 282 LVQQRKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVE 341 Query: 767 LHGGHVSISSSD 778 + G + + S + Sbjct: 342 MMKGEIGVRSRE 353 >gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1480 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +FV++T++ + L E+ + AD K+ F+ +S+E+R+PL +IGF++LL+ L Sbjct: 1079 SFVDMTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSELLQNQSLS 1138 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +Q +Y+ I+ + T LL L+NDILDL+ ++AG +++ I L E+ Sbjct: 1139 P--EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCGEINAIFTQ 1196 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 K+ E + K+ L D Q++ Q+ ++ NA+ F+ +G + + + Sbjct: 1197 KVMEKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGGVTLKVEFRREGPEA 1256 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSI 774 G ++ + G I + + VF F+ NA R + G GLGLSI + I G + + Sbjct: 1257 GTLEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIRKMDGRLLL 1316 Query: 775 SS 776 S Sbjct: 1317 ES 1318 >gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 815 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 9/223 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 EA A K+ F+ ++S+E+R+P+ ++G +L S L +Q ++ E + S Sbjct: 292 KEAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLES---GLAGEQRRFAEAVRNSGE 348 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+++NDILD + ++AG M+L + L DLL V + A + + + D L Sbjct: 349 SLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQLDPALP 408 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMC 735 +V D RL QI +L NA+ F+S+GS V LKAA G+ F V + G I + Sbjct: 409 RYVEGDPVRLRQILVNLLGNAVKFTSRGS-VQLKAAALAGEGWLRFEVADTGIGIRPEAQ 467 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F + R G GLGL+I L GG + + S Sbjct: 468 AHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELGLQS 510 >gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 810 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL++ E +A+ K+ F+ +S+E+R+P+ ++G +DLL+ ++L +++Q +Y+ Sbjct: 419 ALSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLEKTEL---DARQRKYLRMG 475 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672 +S LL+L+ ++LD+A ++ G ++L L ++ E + E + + K I Sbjct: 476 KSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVELAAQEKGLILNKKI 535 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + G+++ D RL QI +L+NAM F+ +G ++ + +F V + G IP+ Sbjct: 536 ALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQGRVLVEVTPAEQTGVLFRVSDTGEGIPQ 595 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +++F F + ++ G GLGL+I + GG + + S Sbjct: 596 ESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVES 641 >gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 474 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV--EYISASSTILL 621 K +++KN F+ VS+ELR+PLT+I G+ + L + G L + + E IS + L+ Sbjct: 247 KNEKLKNDFISSVSHELRTPLTSIKGWGETLIS---GGLEEPEETMLGLEVISKETDRLI 303 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV ++LD + +G MKL+ + + +LL ++ + + H I +K+ + + Sbjct: 304 GLVEELLDFSKFQSGEMKLSRVPMDVRELLQDLHLQFSVRAHAKQIELKLETPPTPLIVM 363 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFN 740 D RL Q+F +L NA+ F+ + ++++ A+ + +V + G I PED+ V Sbjct: 364 GDPNRLKQVFVNLLDNALKFTPQNGSIVIAASLSADRLLVTVTDTGEGINPEDL-PHVTE 422 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F R + G GLGL+I + I LH G S+SS+ T+I +P Sbjct: 423 KFFKG--RSKLSGSGLGLAICKEIIQLHAGRFSVSSALGQGTSIMVDLP 469 >gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 587 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GF + L G+++ Q+ ++ I S Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLD---GAMHDAQTLEYFLTIILKESER 408 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+LDL+ ++ LN S + L+++L EV + K ++ I ++ S+ + Sbjct: 409 LQHLIQDLLDLSKIEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCY 468 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL QIF +++NA+ ++ G V + +D + V + G I + +F Sbjct: 469 MYGDLHRLKQIFINLINNAIAYTPAGGRVTVYVEKDEKELHVHVSDTGIGIEQKEIPRIF 528 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A G GLGL+IV+ + H G +S+ S Sbjct: 529 ERFYRVDKARSRNSGGTGLGLAIVKHLVEAHHGTISVKS 567 >gi|254429150|ref|ZP_05042857.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195319|gb|EDX90278.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 1224 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 15/227 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+ELR+PL +I+ ++ L +K G+L KQ ++ + I ++ LL+L+NDIL Sbjct: 553 KSEFLSTMSHELRTPLNSILILSNALGQNKRGNLEEKQVEHAQVIHSAGADLLSLINDIL 612 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D++ ++ G M + + +++ +++ A N+ KV + D F DRQRL Sbjct: 613 DISKIEEGKMDVIIDDLSPPEIIEHFRRNFAHVAESRNLDFKVELGDTLPEHFYTDRQRL 672 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSVKNNGSSIPEDMC 735 QI +LSNA+ F+ +GS + D + + F+V + G+ I ++ Sbjct: 673 EQIIKNLLSNALKFTEQGSVTLSITQPDVSETLPSRHLVPGQTLKFAVIDTGTGIADEKQ 732 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 K +F F R+ G GLGL+I L GG + + S EG Sbjct: 733 KLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLHSDGEG 779 >gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 937 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSTSQTDYLQTIERSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 +++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + + D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 669 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 22/241 (9%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +FV+V+D +RA+ + EA R +K++F+ ++S+E+R+PL I+G + LL + Sbjct: 267 SFVDVSDLIRAQ---VQAEEASR----MKSAFLANMSHEIRTPLNAIMGLSQLLLRA--- 316 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L +Q + VE + A+ LL ++NDILD + ++ G +++ + + ++ LL EV++ +A Sbjct: 317 NLPPQQRECVETMRAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQ 376 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D L V D RL QI +LSNA+ F+ G V L A R + Sbjct: 377 AADQQGLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIKFTPSGR-VTLSARRATANL 435 Query: 720 --------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 F+V + G I ++ + +F FV R G GLGLSI + L G Sbjct: 436 GHEGPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLG 495 Query: 770 G 770 G Sbjct: 496 G 496 >gi|225574099|ref|ZP_03782710.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM 10507] gi|225038699|gb|EEG48945.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM 10507] Length = 471 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 125/232 (53%), Gaps = 5/232 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 +L ++ L ++ E + +F+ ++S++ RSPLT+I G+ + + + Q +Y+E + Sbjct: 233 SLNYMSDVLNQSGEYQRNFIANISHDFRSPLTSIKGYVEAIADGTIPV--EMQGRYLEIV 290 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L L + +L L ++ +N +N ++ S I I++I Sbjct: 291 SREVERLEKLTSSLLTLNNLEVKSRIMNIRPFDINKVIKNTAASFEGSCRARKILIELIL 350 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 G+ S AD +++ Q+ +L NA+ FS+ ST+ ++ NG SVK++G IP++ Sbjct: 351 TGEQLSVTADMEQIQQVLYNLLDNAIKFSNDNSTITIETTEKNGKIFVSVKDHGCGIPKE 410 Query: 734 MCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + ++ RF ++ RG+ R+G GLGLSIV+ I+ H ++++ S+ EGV T Sbjct: 411 ILPKIWERFYKQDSSRGKDRKGTGLGLSIVKEIISSHNQNINVIST-EGVGT 461 >gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] Length = 711 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 6/238 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A++ K+ F+ +S+E+R+P+ IIG D+L + L +Q YV + Sbjct: 195 LEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSET---DLTPEQDSYVSTMV 251 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD + ++AG + L L +++ +V Q +A + + Sbjct: 252 RSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYSDVA 311 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + D RL QI I NA+ F+ +G + +A G + V ++G IP D Sbjct: 312 PDLPEIMLGDAGRLRQILVNIAGNAVKFTLEGHVALRASAGGPGQIVIRVHDSGVGIPSD 371 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF F V N G GLGL++ + L GG +++ S + T + +P Sbjct: 372 QQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDITLP 429 >gi|125974566|ref|YP_001038476.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714791|gb|ABN53283.1| periplasmic sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 387 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599 +R L EKNE +R K+ K+ F ++S+EL++PL+ I+G L+ K Sbjct: 99 QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 158 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G+ K ++++ I + LL L+N+ILD++ +D+G +K N + L+ ++ S+ Sbjct: 159 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 218 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + ++ + + D ++ +I +LSNA+ F++ G + +K A+ Sbjct: 219 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 278 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I VK+ G IP++M ++F R+ V N + G G+GLSIV+SF+ LH G + + S Sbjct: 279 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 338 Query: 778 D 778 + Sbjct: 339 E 339 >gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] Length = 555 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V+D+++ L ++ +ADE+K +F+ ++S+E+R+P+ IIG +LL+ + L++ Sbjct: 159 VSDTLK----LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQT---PLDT 211 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q Y++ I S+ LL +VNDILDL+ V++G ++ + L L +V Q + Sbjct: 212 QQQHYIKSIKTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFLATAKD 271 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF 721 N++ + L +V D R+ QI +++NA+ F+ K V ++A D F Sbjct: 272 NSVELTFDYPDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKF 331 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778 +V + G I + +F+ + + A + R G GLGLS+ ++ GG + ++S Sbjct: 332 NVIDTGVGIKPESLAVIFDAY-NQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEK 390 Query: 779 EGVTTINCRIP 789 +T +P Sbjct: 391 NKGSTFTLSLP 401 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 11/244 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL +A A K+ F+ ++S+E+R+PL ++G LL++ G +++Q +YVE Sbjct: 362 ALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQLLES---GRPSAEQREYVETA 418 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L L++DILDL+ +++ + + + + D+ + T E +R++V Sbjct: 419 IRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKGVRLEVRV 478 Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI-FSVKNNG 727 D ++ + D RL QI ++ NA+ F+ KG V++ AA ++ I F+V+++G Sbjct: 479 DPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIRFTVQDSG 538 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP + K +F F+ R +G GLGL+IV ++L G + I S+ T + Sbjct: 539 VGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQGEGTLVG 598 Query: 786 CRIP 789 +P Sbjct: 599 VTLP 602 >gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 880 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 125/248 (50%), Gaps = 18/248 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R E L + A+ K+ F+ +S+E+R+P+ +IG T+L + + Sbjct: 471 DITERKRLEEDLFQAKAEAEAANRAKSEFLASMSHEIRTPMNGVIGLTEL---ALMQEPK 527 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K Y+ + S+ LL+++NDILDL+ ++AG ++L + L D+L+ + +++ Sbjct: 528 GKVRDYLGLVKQSANSLLDIINDILDLSKIEAGRVELENADFDLRDMLDSLFETMRLTAE 587 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN--- 716 + D + ++ D RL QIF ++ NA+ ++ G + L+ A D+ Sbjct: 588 RKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNLIGNAVKYTETGQVSVHVGLENAHDSPVA 647 Query: 717 GD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 GD + SVK+ G IP++ + +F+ F + A + G GLGL+I + L Sbjct: 648 GDSDKPEHICLLVSVKDTGIGIPKNKLEKIFDPFDTGARGAKHDGTGLGLTITNRLVELM 707 Query: 769 GGHVSISS 776 GG + + S Sbjct: 708 GGRIIVRS 715 >gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 921 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 141/275 (51%), Gaps = 26/275 (9%) Query: 540 LTFVNVTDSVRAERALTE-------KNEALRKADE-------IKNSFVQHVSYELRSPLT 585 + +V++T+ V A + E KN L++A + K+ F+ +S+E+R+P+ Sbjct: 360 IVYVDITEKVEALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMN 419 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IIG +LL+ ++ L+ +Q +Y+ + LL L+NDILDL+ ++AG ++L Sbjct: 420 SIIGMAELLQETE---LSEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKF 476 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L + + + + I+ + + + + + I+ + D +R+ QI +L NA+ F+ K Sbjct: 477 NLVETVENIAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEK 536 Query: 705 GSTVI-LK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 G + L+ ++D IF++K+ G I + K +F+ F R+ G GL Sbjct: 537 GQVFLDLRIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGL 596 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GL+I + + L GG + + S+ + +T +P K Sbjct: 597 GLTISKQLVELMGGKIWLKSTPQLGSTFYFSLPLK 631 >gi|326795178|ref|YP_004312998.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326545942|gb|ADZ91162.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1000 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 8/221 (3%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+P+ IIG T L+ ++L +Q +Y+ I SS LL L+NDILD + Sbjct: 243 FLATMSHEIRTPMNAIIGLTHLVLDTEL---QERQRRYINRIDESSNNLLQLINDILDFS 299 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690 V++G + L + +L+D+L + + + V D L +F+ D R+ Q+ Sbjct: 300 KVESGKLDLVERSYLLDDVLEYIHHISLPTARSKKLLLLVQRDFNLDDAFIGDVTRIQQV 359 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 ++ NA+ F+ KG + R G +F V+++G I D VF+ F Sbjct: 360 LVNVVGNAIKFTDKGYVCVTVKRRQEGGLLFCVEDSGIGI--DSTLDVFDGFTQADASTT 417 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGLSI + + L GGH+S S TT +P Sbjct: 418 RKYGGTGLGLSISKRLLELMGGHISFKSQVGRGTTFFIELP 458 >gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 785 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 143/270 (52%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL +++ ++ Y I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I T +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + R + D VK+ G I + +F RFV Q G GLGLSI Sbjct: 555 YEGE-IRFGFGRMDKDIRVYVKDTGIGIESEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 543 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 N K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----NKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K + + + + D D++RL+Q+ + ++NA+ F+++G V+ ++ Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIVLEYHYKAES 457 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F+V + G I D VF+RFV N+ +G GLGLSI S I GG + + Sbjct: 458 NEIEFAVTDTGMGIAPDKVNQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGVE 514 Query: 776 S 776 S Sbjct: 515 S 515 >gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 842 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 7/236 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE K A KA++ K+ F+ +S+ELR+PL I+G+ L+ S S + + + Sbjct: 367 QAEELAMAKMSA-EKANQAKSEFLASMSHELRTPLNAILGYVQLMLRSTALSFDHRNN-- 423 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S LL L+ND+L ++ ++AG M L + L LL E+ + K +++ Sbjct: 424 LQIINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLLYELDTLLQLKASSKQLQL 483 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I D + ++ D ++L Q+ I+ NA+ F+ KG + +K F+V++ G Sbjct: 484 SFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG-ITVKVWCKGHQLFFAVQDTGQ 542 Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 I + + +F+ F + A G GLGL I FINL GG ++++S EG T Sbjct: 543 GIENEELEVLFSPFTQATAGIDSGEGTGLGLPISAKFINLMGGDITVNSRVGEGTT 598 >gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 636 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL E+ A+ K+ + S+E+R+PL IIG + LL + L +++Q+ Y + Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPL---SAEQATYAKA 163 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S LL L +++LD A ++AG ++L+ VL+ L+ ++ + +A + + I Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSI 730 D +L S + D RL Q+ + NA+ F+ G +I++ +G+ V++ G I Sbjct: 224 IDERLPVSLIVDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSGELRIIVRDTGIGI 283 Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 D +F+ F A G R G GLGLSI + + GG +++ S +T Sbjct: 284 APDAQARIFHEF-EQADAGIARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTIT 342 Query: 788 IP 789 +P Sbjct: 343 LP 344 >gi|85708111|ref|ZP_01039177.1| sensory box histidine kinase/response regulator [Erythrobacter sp. NAP1] gi|85689645|gb|EAQ29648.1| sensory box histidine kinase/response regulator [Erythrobacter sp. NAP1] Length = 649 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 4/240 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R+E AL E A K+ F+ S+ELR+PL I+GF LL+ L + Sbjct: 388 DMTERRRSEDALRLAREDAVAASLAKSEFLSRTSHELRTPLNAILGFGQLLEID-LEDFS 446 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + VE I+ + LL+L+ND+LD+++++AG +L Y + + +L EV + Sbjct: 447 QPHQEAVERITRAGRHLLSLINDLLDISSIEAGGAELEYEEVDVAAMLEEVHDLAEPIVS 506 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFS 722 + ++ VADR+R+ Q+ ++ NA ++ +GS V L A+ D +G F Sbjct: 507 SAGLSFEMALPEAGAKVVADRRRMTQVILNLVGNAAKYNVEGSFVRLGASLDGDGAATFF 566 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V+++G I +F F + R + G GLGL++ + + GG + S G Sbjct: 567 VEDDGPGIDPANASRLFTAFDRLGQHKRDKTEGTGLGLALSKGLVESMGGQIGYSPRKPG 626 >gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1009 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 18/246 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A A+ K+ F+ ++S+ELR+PL I+GFT LL+ + +L +K +Y++ ++ S Sbjct: 520 DAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKHQEYIKIVNQSGQH 577 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L+ND+L+++ ++AG + N + + L ++ + K + + + + Sbjct: 578 LLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQAIQVMLQLKAESKGLTLNFQVEESVPK 637 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNG----DFIFSVK 724 FV D +L Q+ ++SNA+ F+ +G + L DNG F + Sbjct: 638 FVRTDESKLRQVLVNLISNAIKFTREGEVTLKVSVGQVDEDLGLFEDNGVSNTYLRFEII 697 Query: 725 NNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 ++G I + +F F + + R ++G GLGL I + F+NL GG + +SS + Sbjct: 698 DSGCGIATEEINDLFQAFKQTQSGRESQQGTGLGLVISQRFVNLMGGEIQVSSELGHGSC 757 Query: 784 INCRIP 789 + +IP Sbjct: 758 FSFQIP 763 >gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1179 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 103/446 (23%), Positives = 189/446 (42%), Gaps = 79/446 (17%) Query: 386 ETHKDTWH-LPNGQTLHVIVTSNPRGGTI-WM--------------FENLTVQVDLETKY 429 E ++ W + NG+ H V + + G+ W+ ++ ++++ D+ + Sbjct: 348 EFFRELWQTVANGRVWHGQVKNRAKNGSCYWVEATVVPFMDQDGKPYQYVSMRTDITAQK 407 Query: 430 NTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---NRLSPGT 478 ++VQ E +D L EGV + DG N + W EE L Sbjct: 408 AMELQVQSERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLL 467 Query: 479 HI------RNIAATC---------------SRYYNESDGWDLFAAIITSFDDERKSLQGT 517 H+ R A C + Y+ +G AI+ S + G Sbjct: 468 HVHRPDGTRVTADECPIRQSTMNKKVYHSEAEYFQHKNGTLFPIAIVAS-----PMIDG- 521 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 +L++ SV F ++++ ER L E+ A K F+ +S Sbjct: 522 -DLITGSV--------------AAFQDISERKFTERELLRAKESAEAASRAKGDFLATMS 566 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+P+ IIG T+L ++ ++++Q +Y+ + +S+ LL ++NDILD + +++G Sbjct: 567 HEIRTPMNGIIGMTELALDTE---MSAEQREYLNMVKSSADALLTIINDILDFSKIESGK 623 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696 M+L + +L ++++A + + + + DG + V D RL Q+ + +L Sbjct: 624 MELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLG 683 Query: 697 NAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 NA+ FS G+ T+ +K D + V + G IP D +F F R+ Sbjct: 684 NAIKFSEHGAITLRMKLLMQTSDGLCVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRK 743 Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I + GG +S+ S Sbjct: 744 YGGTGLGLAISSKLVAAMGGDLSVES 769 >gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] Length = 1516 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 11/250 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD +A L +A+ K+ F+ ++S+E+R+PL ++G LL+++ SL+ Sbjct: 1117 DITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLNGVLGMLQLLQST---SLD 1173 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y S L L++DILDL+ V+AG + + L++ +N V + T+ Sbjct: 1174 VEQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVPFDLSETVNVVNELFKTQAI 1233 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E+ I + D + + D RL Q+ ++ NA+ F+ G + + D Sbjct: 1234 ESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTHAGKIAVSSHLLPSSDPKRI 1293 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +FS+ + G IP D +F F VS + + +G GLGLSI + + L GG++SIS Sbjct: 1294 SLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAGLGLSICKHLVTLMGGNISIS 1353 Query: 776 SSDEGVTTIN 785 S TT+N Sbjct: 1354 SVLGQGTTVN 1363 >gi|258623855|ref|ZP_05718809.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM603] gi|258583844|gb|EEW08639.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM603] Length = 785 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 23/253 (9%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L S V D RL Q+ ++SNAM F+ +G V+ +A + D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQHADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 G IPE+ + +F + N H G G+GL++ I L GG +S+ +S+E Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKPGKDNLH---AVGTGIGLAVSRQLIKLMGGDISV-NSEE 496 Query: 780 GVT---TINCRIP 789 G T+ R+P Sbjct: 497 GFGSTFTVTIRVP 509 >gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 993 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 21/245 (8%) Query: 553 RALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L +++E L+K A+ K++F+ ++S+E+R+PL +I+GF+DLL S +N+ Sbjct: 361 RKLLDQSEQLQKLAVDAEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCAS---DINAN 417 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +Y IS S+ LL+++NDILD++ +++G ++L LN +L+ V + I+ + E Sbjct: 418 DKEYALTISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMISVRASEK 477 Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDF 719 +I D + + D +R+ Q+ +L NA+ F+ KG + L A D D Sbjct: 478 DINFLFYCDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKADDTVDV 537 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 F V + G I E +F F A G R G GLGL+I +++ + + S Sbjct: 538 RFEVHDTGIGISEAAVAHIFEPF-HQADAGINRKYGGTGLGLTICNKILHIMESEIRVYS 596 Query: 777 SDEGV 781 S EGV Sbjct: 597 S-EGV 600 >gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 694 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+ELR+PL II T+LL+ + +S+ + I +S L +V Sbjct: 313 ANAAKSQFLANMSHELRTPLNGIIAMTELLRDHQT---DSRGREMAATIISSGHTLEYVV 369 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 NDILD+A ++AG+++ + L+DLL Q I +++ I D G + D Sbjct: 370 NDILDVAKIEAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGVYRGD 429 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNR 741 R R+ Q+ S ++SNA+ F+ G + AR +GD SV + G +F R Sbjct: 430 RTRVSQVISNLISNAVKFTETGGVQV--TARRHGDRELCLSVSDTGVGFDRATAARLFQR 487 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I S + GG V++ S Sbjct: 488 FEQADVSVSRRYGGTGLGLAICASLTEIMGGRVTVRS 524 >gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 538 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 10/220 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+ELR+P ++G LL+++ L + Q+ Y++ S+ LL L+ Sbjct: 128 ANRGKSQFLANMSHELRTPFNGMLGMMSLLEST---PLTTAQTDYIKTAKGSANHLLTLL 184 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD++ +++G M LN + L LLNEV + E ++ ++ +L ++V AD Sbjct: 185 NDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQLKFSIVVQAELPAWVLAD 244 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 RL QI +++NA+ F+ G + +R D F V++ G + + + +F Sbjct: 245 ATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFLVEDTGIGMDDHVLSRLF 304 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 RF V + G GLGL I ++ + GG + + S+ Sbjct: 305 QRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVEST 344 >gi|134293593|ref|YP_001117329.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134136750|gb|ABO57864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 664 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL +++ +K+ + VS+ELR+PL I G+ ++L++ G ++Q+ ++ Sbjct: 268 RALRGARVQADQSNRLKDELLSTVSHELRTPLNVIYGWVEVLRSVD-GQAFAQQA--IDA 324 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ L +V D+LD +++ G +L + + L ++ + + + N I + Sbjct: 325 IDRSARSLSRMVGDLLDASSLATGRTRLERAPVDLVRIVRDAVRELGGSADANGIALS-- 382 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +D L + V AD +RL Q+ S +LSNA+ F+ G + + AR +V + G I Sbjct: 383 TDCALTNCVISADGERLRQVLSNLLSNAIKFTPSGGRITVSLARAGARVRMAVTDTGHGI 442 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 + +F+ F A +RG+GLGLSIV + + LHGG V+ SS G+ TT+ Sbjct: 443 SAERLPHLFDTFNRPEGAAASPKRGLGLGLSIVRNIVRLHGGDVAASSPGAGLGTTVTVT 502 Query: 788 IP 789 +P Sbjct: 503 LP 504 >gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 692 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ S+ELR+P+ II TDLL S LG+ +Q + I +L+L+N+IL Sbjct: 315 KSDFLAAASHELRTPMHGIISMTDLLLESDLGA---EQRELAAIIGYCGETMLSLINNIL 371 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D++ ++AG M+L+ L L++ V A ++ ++R++V+ D ++ D RL Sbjct: 372 DISKIEAGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPEVPAQLEGDPVRL 431 Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743 Q+ + ++ N++ F+ +G I + A GD + F V + G + + +F F Sbjct: 432 AQVLTNLVGNSLKFTPRGQIAIRVHPAAQGGDDLRLRFEVVDTGIGMAPETTGRLFQSFF 491 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 R+ G GLGL+I + L GG + + S E +T +P K Sbjct: 492 QADTSTTRKYGGTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVLPLK 541 >gi|323706234|ref|ZP_08117801.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534398|gb|EGB24182.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 473 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 L + D + FV +VS+ELRSPL+ I G+ D + G++ +++S+ Y+E + + Sbjct: 241 LGRMDNARKEFVANVSHELRSPLSTIQGYIDGVVD---GTIPAEKSKFYLEIAQKETRRM 297 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L++++LD+ +++G LN S +N+L+ + ++ + ++ +KV + Sbjct: 298 SRLISELLDITKMESGAFPLNISEFDINELIRLTIIKMEARISDKDLMVKVDFESDKEIV 357 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD+ ++ Q+ + ++ NA+ FS+ G + + + V+N G +IP D +++ Sbjct: 358 EADKDKIEQVLTNLIDNAIKFSNPGGYIHVSTEKVKEKVHVRVQNKGKTIPPDEIDHIWD 417 Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF + R GVGLGL IV S INLH + +SSD TT + SK+ Sbjct: 418 RFYKVDKARSGSPGVGLGLYIVRSIINLHNEDIWATSSDADGTTFTFTLKSKK 470 >gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65] gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65] Length = 938 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 132/243 (54%), Gaps = 13/243 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++ ++ + + + E +A + K+ F+ ++S+E+R+P+ ++G L++ SK LN Sbjct: 402 DISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKSK--GLN 459 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL--LNEVKQSIATK 661 Q + S+ LL ++NDILD + ++AG K+N TI N L ++++ +S+A Sbjct: 460 RDQLHQINLAHTSAESLLVVINDILDFSKIEAG--KINLETIDFNLLEWISDISESLAFH 517 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 H+ +I + + ISD + + D R+ Q+ S ++ NA+ F++ G I L + + Sbjct: 518 AHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEKSNL 577 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 I S+K+ G I ED +F+ F N+ Q G GLGL+I + + GG V++ Sbjct: 578 IKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGGDVTV 637 Query: 775 SSS 777 SS+ Sbjct: 638 SST 640 >gi|316941685|gb|ADU75719.1| integral membrane sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 387 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599 +R L EKNE +R K+ K+ F ++S+EL++PL+ I+G L+ K Sbjct: 99 QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 158 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G+ K ++++ I + LL L+N+ILD++ +D+G +K N + L+ ++ S+ Sbjct: 159 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 218 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + ++ + + D ++ +I +LSNA+ F++ G + +K A+ Sbjct: 219 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 278 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I VK+ G IP++M ++F R+ V N + G G+GLSIV+SF+ LH G + + S Sbjct: 279 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 338 Query: 778 D 778 + Sbjct: 339 E 339 >gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] Length = 2333 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 37/267 (13%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1854 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1913 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +LN +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1914 KGT---NLNKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1970 Query: 655 KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 +++ + + KV D + + D RL QIF +LSN+ F+ KGS TV Sbjct: 1971 VRALRYTHRDRGLETIEDLDKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSITV 2027 Query: 709 ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762 K +R+ + +V + G IPE+ +F F S A R G GLGLSI + Sbjct: 2028 RAKVSREGKGRLRLECAVSDTGIGIPEEQKSRLFKPF-SQADSSTARSYGGSGLGLSICK 2086 Query: 763 SFI-NLHGGHVSISSSDEGVTTINCRI 788 + I ++ GG + + S+ TT+ R+ Sbjct: 2087 AIIEDVLGGAIWLDSTPGVGTTVTFRL 2113 >gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] Length = 1390 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 7/245 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606 S R+ A + E L + D K +F ++S+E R+PLT I+G ++L+TS+L + + Sbjct: 331 SARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSEL---DVRV 387 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E + L LVN +LD + + AG M+ + + L + E+ + + Sbjct: 388 REELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAG 447 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V DR ++ +LSNA+ F+ +G+ V ++ D+G + +V + Sbjct: 448 LEFTVDCPPLAEPVYVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADT 506 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE +F RF V G G+GL++V+ I LHGG + S + G TT Sbjct: 507 GVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGGGTTF 566 Query: 785 NCRIP 789 ++P Sbjct: 567 TIQMP 571 >gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 2109 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 10/250 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++T+ E A ++EA +E K+ F+ +S+E+R+P+ I+G L+K G Sbjct: 1591 SLTDITERKAKEAAEQARHEA-EAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQ---G 1646 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LNS+Q++ ++ I + LL+++N+ILD + +++G ++L ++ D+++E+ Sbjct: 1647 QLNSEQNEQIDTIYNAGQTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKP 1706 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 E +++I + L + D + L QI + SNA+ F+ +G I L +D Sbjct: 1707 VAQEKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNALKFTHQGYIRISCEGLPDTQDK 1766 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F++++ G IPE +F F RR G GLGL+I I G + Sbjct: 1767 LKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGF 1826 Query: 775 SSSDEGVTTI 784 S++E TT Sbjct: 1827 ESTEEQGTTF 1836 >gi|329847432|ref|ZP_08262460.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842495|gb|EGF92064.1| mmoS [Asticcacaulis biprosthecum C19] Length = 504 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 5/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F + +S+E+R+PL ++G DL+ + L+ Q+ Y+ S LL LVND+L Sbjct: 22 REDFFRLMSHEIRTPLNGLMGMLDLMAKT---PLSPDQNSYLTTARHSGEHLLTLVNDLL 78 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D A +DAG ++L + L LL V + ++ + H N+I I D +L AD RL Sbjct: 79 DYARIDAGRIELETGEVHLEPLLQSVAELLSPRAHANHIEIAWSLDPRLDFIQADEGRLR 138 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI + NA+ F++ G +I D+ FS+++ G IP + + +F + V Sbjct: 139 QILFNLAGNAIKFTATGGVLIQVGLTDDDLIRFSIRDTGPGIPPEARERIFEEYGQVHPT 198 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 H + G GLGL +V+ + + G +S+ S Sbjct: 199 HATRYGGAGLGLVVVKKLVEVMDGTLSLES 228 >gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] Length = 924 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 12/231 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613 LT + + A+ +K+ F+ +S+ELR+PL +IGFT L KT LN Q Y++ I Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTP----LNKNQKDYLDTI 331 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L+ +++DILD + ++AG M+L L D +NEV +A H+ + + + Sbjct: 332 ELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYI 391 Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728 + ++ D R Q+ +LSNA+ F+ KG+ + + R + + SV + G Sbjct: 392 NPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSVLVSVADTGV 451 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP D ++F F R+ G GLGL I + + G ++++S+ Sbjct: 452 GIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSA 502 >gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1847 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 11/248 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R+L EK E L+ K+ F+ ++S+ELR+PL +++ + +L ++ G+L +Q ++ Sbjct: 1436 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFA 1495 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S LL L+N+ILDL+ ++AG M + L + ++++Q+ + + Sbjct: 1496 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQ 1555 Query: 671 VISDGKLGSFVADR-----QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 V ++G + +R RLLQI ++SNA F+ +G V+ G F+V++ Sbjct: 1556 V----RMGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRD 1611 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I D K +F F R+ G GLGL+I L GG + + S+ + Sbjct: 1612 TGIGIAADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSV 1671 Query: 784 INCRIPSK 791 +P++ Sbjct: 1672 FTLVLPAR 1679 >gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas fluorescens] Length = 917 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ ++ +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MSPRQLDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731 L + V D RL QI + ++SNA+ F+ +G+ V I D+ SV++ G + Sbjct: 391 PL-ALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 450 NQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 785 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 13/268 (4%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K +F+ ++S+E+R+PL Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF++LL +++ ++ Y I+ +S ILL L+NDILDL+ ++AG ++ + Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704 L ++ + Q ++ E + +I D + + DR R+ Q+ + L+NA F+ Sbjct: 501 LGEVCRNIYQIHKDRVQEG---VTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS 557 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 G + DN F VK+ G I D +F+RFV Q G GLGL+I Sbjct: 558 GE-IRFGFKVDNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614 Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + +S +T IP KE Sbjct: 615 IEKIGGEIGATSEVGKGSTFFFTIPYKE 642 >gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355] Length = 880 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ VR E++L E A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 374 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLP- 432 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S V ++ SS++LL +++DILD + +++ +K+ +++ + + + Sbjct: 433 --SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSL 490 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + I + D RL Q+ S +L+NA+ F+ G +IL A G Sbjct: 491 VVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVTQGYLA 549 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 F ++ G IP +F+ F + QR +G GLGL+I E IN+ G + + S Sbjct: 550 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 609 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 610 GMGSQFIVRIP 620 >gi|299139603|ref|ZP_07032777.1| histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298598531|gb|EFI54695.1| histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 709 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 4/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + LRK ++K SF+ ++S+E R+PL +I + LL G L+ +Q + V YI Sbjct: 208 LEQHADDLRKVSDLKTSFLSNLSHEFRTPLNSISSLSRLLLGRTDGELSEEQEKQVTYIQ 267 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S++ L LVND+LDLA V+AG + + +ND ++ + + N++ + + Sbjct: 268 HSASELSELVNDLLDLAKVEAGKIDVKPRHFEVNDFFGALRGMLKPLLAGNSLELIFDAA 327 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733 L + D ++ QI +++NA+ F+ KG + D G F V + G I PED Sbjct: 328 ADLPTLYTDEGKVSQILRNLIANALKFTRKGHIRVTAEIEDGGWVAFRVADTGIGILPED 387 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F F + + Q +G GLGL + L GG +++ S +T RIP+ Sbjct: 388 QER-IFEEFTQIEGEMQSQVKGTGLGLPLSRRLAELLGGSLNVESESGQGSTFTARIPA 445 >gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] Length = 1994 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 133/242 (54%), Gaps = 10/242 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + E+AL+E + ++ K++F+ ++S+E+R+P+ ++GF LL+ +L Sbjct: 1214 IDITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQR---AL 1270 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + V I + LL L+NDILD + ++AG +++ + L++LL+ + + Sbjct: 1271 DPTSADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAA 1330 Query: 663 HENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 + + + + G+ + + D RL Q+ +L NA+ F+++G + ++ ++GD + Sbjct: 1331 GDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARGEVELRVEQVAEHGDRL 1390 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+V++ G I + ++FN F + RR G GLGL+I + +++ GG + + Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450 Query: 776 SS 777 S+ Sbjct: 1451 ST 1452 >gi|7547007|gb|AAF63755.1|AF243474_1 putative ethylene receptor [Vitis vinifera] Length = 741 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS++L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + L F V D +RL+QI ++ NA+ FS++G+ I ++ Sbjct: 432 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD+ DF VK++G+ I P+D+ K +F +F R G GL Sbjct: 492 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GGH+ I S G Sbjct: 551 GLAICKRFVNLMGGHIWIESEGLG 574 >gi|292491538|ref|YP_003526977.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580133|gb|ADE14590.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 366 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 8/252 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++AL + + L +++ F S++L+ PL + + LL G L+ Sbjct: 119 DITERKEIQKALERQTQELTRSNTELEQFAYVASHDLQEPLRMVSSYAQLLARRYRGQLD 178 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S +++E++ +T + L+ND+L + V G ++T N ++ +V +S+ + Sbjct: 179 SDADEFIEFMVDGATRMQALINDLLAYSRV--GTKGKPFTTTDGNQIIQQVLESLRFVIE 236 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS 722 E + + V L +ADR +L+Q+F ++SNA+ F + + I A++ GD IFS Sbjct: 237 ETHAHLTV---DPLPVLIADRAQLVQLFQNLISNALKFRGEETPKIHINAKEEGDQVIFS 293 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGV 781 V +NG I + +F F + + G G+GLSI + + HGG + + S DEG Sbjct: 294 VADNGIGIEPQYAERIFLLFQRLHTKKEYPGTGIGLSICKKIVERHGGQIWLESKPDEGT 353 Query: 782 T-TINCRIPSKE 792 T +P+KE Sbjct: 354 TFFFTLPLPAKE 365 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 10/249 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+ L + + A +K F+ ++S+E+R+PL I G LLK + SL+ +Q +Y Sbjct: 417 KTEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKET---SLDMEQKEY 473 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ SS L L++DILDL+ ++AG M ++ +L + V + A ++ + Sbjct: 474 VDLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSL 533 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724 + I +G V D R+ QI ++ NA+ F+ KG + L A D + +V+ Sbjct: 534 ECIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSWSLYAGDDTEQQVRITVQ 593 Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G + +++ + +F FV N++ + +G GLGLSIV+ + L G++S+ S + Sbjct: 594 DTGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGS 653 Query: 783 TINCRIPSK 791 T +P K Sbjct: 654 TFYVDLPLK 662 >gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] Length = 1144 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + +R L E E +A+E K+ ++ +S+ELR+PL +I+G+ LL + + S Q + Sbjct: 668 QTDRELQEAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKE--EVASDQKRG 725 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S L +L+ +LD++ ++AG + L + + L +L++++ + + + ++ + Sbjct: 726 LKIIHRSGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQADKKSLVL 785 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 DG+L +V D +RL QI +LSNA+ ++ KG V N F V++ G Sbjct: 786 NFTLDGRLPDYVMTDEKRLRQILINLLSNAIKYTDKGK-VDFHIRYRNQVAEFVVRDTGP 844 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I ++ VF F V N+ R G GLGL+IV+ + GG + + S Sbjct: 845 GIEKENLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKS 894 >gi|293369483|ref|ZP_06616064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635435|gb|EFF53946.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 642 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 456 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ ++ + Sbjct: 457 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 516 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ +G T+ + IFSV + G Sbjct: 517 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 576 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627 >gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1195 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 16/249 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ A+ AL + E A+ K+ F+ ++S+E+R+P+ I+GF DLL Sbjct: 687 TITDITEKKVAQEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKR--- 743 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + + Y+E +++ +LL+L+NDILDL+ +++G +++ + I L L+ E+KQ Sbjct: 744 ITDERSRHYLESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVE 803 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718 E NI + V I++ V D RL QI ++ NA+ F+ KG I +K+ D Sbjct: 804 TAKEKNIELLVNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSD 863 Query: 719 ---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 S+++ G I D K VF+ F + + R+ G GLGL+I + Sbjct: 864 KNHHPSYCSLEISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEM 923 Query: 768 HGGHVSISS 776 G + + S Sbjct: 924 LKGIIDLES 932 >gi|58338067|ref|YP_194652.1| two-component sensor histidine kinase-like protein [Lactobacillus acidophilus NCFM] gi|227902755|ref|ZP_04020560.1| sensor histidine kinase [Lactobacillus acidophilus ATCC 4796] gi|58255384|gb|AAV43621.1| two-component sensor histidine kinase homolog [Lactobacillus acidophilus NCFM] gi|227869418|gb|EEJ76839.1| sensor histidine kinase [Lactobacillus acidophilus ATCC 4796] Length = 381 Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLKT S Q +YV+ + + + Sbjct: 148 RAIEKSKDELITNVSHDIRTPLTSIIGYLGLLKTGI--SSKEDQQKYVDIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L +D+ + T+ + KLN + + + +L +V + + I I++ + K + A Sbjct: 206 LADDLFEYTTLKSTSTKLNLNELHIYSMLEQVAAGFELEAEKKGIDIEIEARPKNLTIQA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + + L A N + V+NNG IP K +F+R Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKSEVELRVENNGEPIPVSAQKKIFDR 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI +S ++LH G + SDE T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDENWTSFIIRLP 374 >gi|330969015|gb|EGH69081.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1188 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K++F+ +S+E+R+P+ IIG +L L Sbjct: 669 WIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 727 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L + V + + + Sbjct: 728 LGMMPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLRGLFDGVIELFSAQ 787 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E + +++ +S G + D RL Q+ +L NA+ F+ +G+ V+ L D+ D Sbjct: 788 AREKGVELRLELSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPDS 847 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 848 TRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVALMKGD 904 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 905 ISLHSEPGKGTLVTIDLP 922 >gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 930 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 36/360 (10%) Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA-----ATCSRYYNESDGWDLFAAIITS 506 P G + +P + L E + + G H R I A C +Y E W+ Sbjct: 324 PHGVVTYVSPGYTKLLGHEPDHIV-GKHFREIVHPDDVALCEDFYREV--WE-------- 372 Query: 507 FDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTML-TFV----NVTDSVRAERALTEKN 559 + R+ L+ + S+ + + IPL N + + +FV ++T+ + + L Sbjct: 373 HGEIRRGLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQAELQAAR 432 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA A K+ F+ +S+E+R+PL I+GF+ L + + G + +YV+ + SS + Sbjct: 433 EAAEAASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGV---QLREYVDILDQSSRL 489 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L++LVND+LD++ V+AG ++L L + ++ ++ A + +VI + L Sbjct: 490 LMDLVNDVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPP 549 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSIP 731 ++ D R QI S +LSNAM F+ G ++ A+D + V++ G I Sbjct: 550 WIQGDPIRFRQIASNLLSNAMKFTESGCVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIE 609 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S+F F R+ G GLGL+IV + L G V ++S+ ++ +P Sbjct: 610 ARQIASLFQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELP 669 >gi|296268467|ref|YP_003651099.1| histidine kinase [Thermobispora bispora DSM 43833] gi|296091254|gb|ADG87206.1| histidine kinase [Thermobispora bispora DSM 43833] Length = 560 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK+ LR+ E + F VS+ELR+PL +IIG LL L+ +Q + I Sbjct: 193 LEEKSARLRELAEARQRFWVSVSHELRTPLNSIIGLVRLLLGPGGEPLSEEQEHQIRLIG 252 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVIS 673 +S+ LL +V+++LD+A ++G ++ + + L EV ++ H + + V + Sbjct: 253 SSAETLLAMVSELLDMAKAESGRIQPQPVAVDVAALAEEVCTALRPAAPHRVALIVDVAA 312 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPE 732 D +G AD+ L +I +L NA+ F+ +G + ++ D GD +F+V + G IP Sbjct: 313 D--VGEMFADKAILARILHNLLYNALKFTYEGEVRLSVRLDPDAGDVVFTVADTGIGIPA 370 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + VF F V + G GLGL GG ++++S + TT R+P Sbjct: 371 KYLERVFEEFFQVPGPVAVKAEGSGLGLPYARRLAEALGGTLTLTSREGEGTTATLRVPR 430 Query: 791 K 791 + Sbjct: 431 R 431 >gi|256376492|ref|YP_003100152.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920795|gb|ACU36306.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 722 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 168/365 (46%), Gaps = 43/365 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GT----HIRNIAATCSRYY 491 ++ L+ GV F GR+ +N A S + LSP GT H+R I AT R+ Sbjct: 365 VNVLNVGVVQFDERGRVDHANAAALSWLGID---LSPSAVAGTLLQQHLRPIGAT--RHP 419 Query: 492 NESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFVNV 545 E II+ + D+E + G LELL +EYS P+ +L +V Sbjct: 420 VEQ--------IISEGAVDEE---ITGELELLDGRAVEYSYQPVGLGDERVGALLVMQDV 468 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ V A+R L NE L + ++ FV +S+ELR+PLT + LLK S Sbjct: 469 TERVAAQRVLELSNEELTRLVALRTEFVSSMSHELRTPLTVVASSAALLKEESEDS-GGV 527 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + I +++ LL++V D++DLA ++ G + ++S + LL V + I + + Sbjct: 528 HGQLADAIERNASRLLSVVEDLVDLARLEGGAVTADHSPANITALLGGVMRRIDDRASDR 587 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R+ V S+ + + + D +RL+ + LS A+ S++G +V + G ++ V + Sbjct: 588 GVRLVVSSEKEAVTVLGDAERLVTMLDYALSAAIGISTEGESVTVSTGVRQGRWVLDVLD 647 Query: 726 NGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIV--ESFINLHGGHVSISSSD 778 P + S + + A R R V G+S V + HGG + + + Sbjct: 648 -----PRPLQASGSRMYSAIARLGRWGRADRTAVSTGVSTVLARAIAEWHGGAIEVFGVE 702 Query: 779 EGVTT 783 +G T Sbjct: 703 DGTVT 707 >gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1167 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 10/238 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A + K+ F+ + +E+R+P+T ++G ++LL + L + Q Y I + Sbjct: 789 KQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPL---DPVQRSYAGSIQQAG 845 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675 + LL LVND LDLA ++AG ++L+ L LL++V+ + + + + +D G Sbjct: 846 SHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQRGNDPQG 905 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734 + S D R+ QI +L NA+ F+ +G + DNG + F V ++G I + Sbjct: 906 PI-SVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYDSGPGINAEQ 964 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+RF ++ R R G GLGL+I + GG + + SS R+P Sbjct: 965 QERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRVRLP 1022 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 EA A+ IK+ F+ +S+ELR+PL I+G+ LL+T +L K++ +E I ++ Sbjct: 335 REAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQLS--EEKKAIALETIERNAK 392 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGK 676 + L+ D+LD++ + G + LN S++ L + +++A +I+I ++ D + Sbjct: 393 LQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQ 452 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L F+ D RL Q+ +L+NA+ F+ G V +K N V + G I + Sbjct: 453 L--FMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLESTNTYTQIQVSDTGKGITPEFLP 510 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789 VF F R+ G+GLGL+IV + +HGG V S E I R+P Sbjct: 511 YVFETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLP 566 >gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 895 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYV 610 E+ + E+ L KA++ K+ F+ ++S+E+R+P+ ++G T+LL LG+ LN++Q QY Sbjct: 357 EQKVEERTRKLEKANQAKSEFLANMSHEIRTPMNGVLGMTELL----LGTELNTRQQQYT 412 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S+ LL ++NDILD + ++AG ++L L L+++ + K + I++ Sbjct: 413 RTIHNSALSLLGIINDILDYSKIEAGKLELESVPFNLEILVDDCTAIFSLKCAQKPIQLT 472 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725 I+ G V D RL QI + NA F+ KG I L+ FS+++ Sbjct: 473 SRIAPGTPIDLVGDPTRLRQILINLTGNAFKFTEKGEICIGIEFLEDHSKQVRLKFSIRD 532 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +G + E+ +F F R+ G GLGL+I + L G + + S Sbjct: 533 SGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGLGLAICKQLAELMEGEIGVDS 585 >gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1139 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 171/368 (46%), Gaps = 31/368 (8%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 ETKY L+ + +G V +GRI SNPAFR + + L T+ +++ Sbjct: 484 ETKYRALLA-------SIRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTY-KDL-- 533 Query: 486 TCSRYYNESDGWDLFAAIITS-----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 ++E++ L A+ T F+ E + G++ ++ + Y N + Sbjct: 534 -TPESWHETEETILRTAVDTCGFSDVFEKEYRRRDGSVVPVALRLHRYPSRAGENYRYFA 592 Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++TD E L + E A+ K+ F+ +S+++R+PL +IG T+L LG Sbjct: 593 IVRDITDVKAIEADLRQAKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTEL----TLG 648 Query: 601 S-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + L+++Q +E + S+ LL L+NDILD++ ++A + + L L +++ Sbjct: 649 TLLSAQQRDALETVRESAASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMR 708 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714 + + + + + + FV D R+ QI + ++ NA+ F+ +G + + Sbjct: 709 PQAAQKALFLGLAIAPAVPRFVTGDEVRVRQILTNLIGNALKFTDQGGVTVSVAPMAGPD 768 Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHG 769 GD + F+V + G IP D S+F F +NA G+ G GLGL+I L G Sbjct: 769 APGDPLFLEFTVADTGVGIPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMG 828 Query: 770 GHVSISSS 777 G + S+ Sbjct: 829 GGIRTEST 836 >gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4] Length = 1410 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608 R E L A A+ K F+ VS+E+R+PL IIGF D++ + G + + + ++ Sbjct: 1159 RTEEELRSAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPIGHGRYAE 1218 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I S +L++VND+LD++ ++AG M L++ + LN+ ++E + + + + Sbjct: 1219 YAADIGRSGRHVLDIVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQANGQRVI 1278 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727 I+ + + VAD + + QI ILSNA+ F+ G +I+ NG +++ G Sbjct: 1279 IRTALSQSVPNVVADMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRDTG 1338 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + + F + G R G GLGL + ++ ++ + +I S+ T + Sbjct: 1339 IGMTRAELEQAMKPFRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQSTPNEGTLV 1398 Query: 785 NCRIPSK 791 PS Sbjct: 1399 EITFPSP 1405 >gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii 37] Length = 1278 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 25/260 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA++A+ + L KA K+ F+ ++S+ELR+PL +++ + L + G+LN +Q + Sbjct: 553 RAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNSQGNLNEEQQED 612 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I LL L+NDILDL+ V+AG + +++ +N+LL + + ++ + + Sbjct: 613 ARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQFKPVANKKGVEL 672 Query: 670 -----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------- 711 V+SD F +D QR+ Q+ +LSN + F+ G TV LK Sbjct: 673 CFDKEDVLSD----DFFSDPQRIEQVLRNLLSNGIKFTHHG-TVSLKVIQPGPSVRFDNP 727 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 A R F+V + G I D +SVF F R G GLGL+I + L G Sbjct: 728 ALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTISRELVKLMG 787 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + + S + +T +P Sbjct: 788 GEIQLQSKEGEGSTFTLYLP 807 >gi|119486137|ref|ZP_01620197.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456628|gb|EAW37757.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 615 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 16/237 (6%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ + S+ELR+PL IIGF L+ + ++ ++V+ ++ LLNL+ND+ Sbjct: 355 LKSEFLANTSHELRTPLNGIIGFLKLVIDGMVDD-PEEEREFVQEGHRAALHLLNLINDV 413 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685 LD+A ++AG M+++ + + +++LL EV+Q T++ + + + + + A+ Q Sbjct: 414 LDIAKIEAGKMEIDLALVKVSELLKEVEQFTKTQVQQKGLNLSIHEHSYSPDLIVYANYQ 473 Query: 686 RLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDFIFSVKNNGSSIPEDMC 735 RLLQ+ ++ NA+ F+ +G VIL+ G F V + G +P + Sbjct: 474 RLLQVMLNLVGNAIKFTHEGGVNISLGVLNQKVILQNQEFPGFVEFRVTDTGIGVPLEKQ 533 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 +F F V + Q G GLGL I + + GG V S EG+ +T+ +P Sbjct: 534 DRLFKAFSQVDTGYTRQYGGTGLGLVISQKLVQAMGGSVKFYSLGEGLGSTVTFTVP 590 >gi|330985056|gb|EGH83159.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1185 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ R E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ A D+ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRV 847 Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +++++G I PE + ++ AH G G GLGLSI + L G +S+ Sbjct: 848 RIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYG---GSGLGLSITRQLVELMKGDISL 904 Query: 775 SSSDEGVTTINCRIP 789 SS T +N +P Sbjct: 905 HSSPGEGTLVNIDLP 919 >gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Treponema phagedenis F0421] gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Treponema phagedenis F0421] Length = 514 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 14/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + ++ + + E K+ +I F+ +VS+++R+P+ IIG +LL+T+KL + Sbjct: 107 DITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTKL---D 163 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y+ I+ S+ ILL LVNDILD + ++ G M+ L L+ IA + H Sbjct: 164 QEQKEYIRQINFSAEILLELVNDILDFSKLEVGSMQFENIPFDLVSLMESSIDFIAIEGH 223 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD-- 718 + + I + L F+ D RL QI ++ NA+ F+ KGS + +A + D Sbjct: 224 KKGLEILLNMSPALNPYFIGDPSRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGK 283 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F + + G I ++ + +F F RR G GLGL+I ++ I + G + Sbjct: 284 AMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEI 343 Query: 773 SISSSDEGVTTINCRIP 789 + + + ++P Sbjct: 344 GVKDNKPHGSIFWFKLP 360 >gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 606 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 41/362 (11%) Query: 438 ETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNES 494 ETI +++++GV F DG + +NPA + + E + + +++ N+ T Sbjct: 262 ETILNYMTDGVIAFNLDGEVVHANPASKLMLGVNEFNMDFNKFSNMYNLGIT-------- 313 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAER 553 ++ L L + S E S+ N + F ++ D +AE Sbjct: 314 -------------------IEEMLYLETFSTKEASL-SFDNKYIRVYFALSTNDQNKAEG 353 Query: 554 --ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-- 609 A+ N +K D ++ FV +VS+ELR+PLT+I +++ L G+L K++ Y Sbjct: 354 IIAVMHDNTVQQKLDNMRREFVANVSHELRTPLTSIKSYSETLMD---GALEDKETAYRF 410 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I++ + + LV D+L L+ ++ M+ N L+ + I E I Sbjct: 411 LNVINSEADRMTRLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVI 470 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + S G AD+ R+ Q+ +L+NA+ ++ + + + D V ++G Sbjct: 471 ECFSIGDKPEVYADKDRIEQVVLNVLTNAIKYTPDKGKITVYIGKMYSDAYVKVVDSGIG 530 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE+ K VF RF V A + G GLGLSI + I H G +SISS T + R Sbjct: 531 IPEEDIKRVFERFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVR 590 Query: 788 IP 789 +P Sbjct: 591 LP 592 >gi|225462102|ref|XP_002277460.1| PREDICTED: ethylene receptor-like [Vitis vinifera] Length = 742 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 316 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 375 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS++L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 376 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 432 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + L F V D +RL+QI ++ NA+ FS++G+ I ++ Sbjct: 433 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 492 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD+ DF VK++G+ I P+D+ K +F +F R G GL Sbjct: 493 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 551 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GGH+ I S G Sbjct: 552 GLAICKRFVNLMGGHIWIESEGLG 575 >gi|307727189|ref|YP_003910402.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307587714|gb|ADN61111.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 720 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 11/232 (4%) Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ER + EA R A+ K F+ ++S+ELR+PL I+G+ +L+ SL++ + Sbjct: 243 ERDAAAEREARRSAEAANRAKAEFLANMSHELRTPLNAILGYAQILRRD--ASLSAGHRE 300 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V I S LL L+ D LD A ++AG +++ + + L L+ +++ I K+ + ++ Sbjct: 301 RVGVIQRSGEHLLALIGDALDFARIEAGRLRIEMNDVPLAGTLDAIREIIEVKVAQKHVD 360 Query: 669 I--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +V D + AD +RL Q+ +L+NA +F+ +GS +L +G F V++ Sbjct: 361 FIWRVAPDVP-DAVRADERRLRQVLLNLLANAFNFTDQGSVSLLIEMSASGKVCFEVRDT 419 Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776 G + D +++F F H RG G GLGL+I + F+ G + + S Sbjct: 420 GIGMDADQFQTIFEPFEQIVHTERGT-SGTGLGLTISQQFLRAMGSEIHLQS 470 >gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] Length = 886 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 10/262 (3%) Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 P + + F+ +++D VR++ AL + ++ K + +S+E+R+PL I+G + Sbjct: 329 PTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMSHEMRTPLNGILGTLE 388 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL+ SL ++ +Y+ I SS ILL VN++LD++ +DAG M L + L LL Sbjct: 389 LLEAD---SLPAEDQRYLRIIRQSSEILLGHVNEVLDISRLDAGKMTLRKTRFDLVALLE 445 Query: 653 EVKQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 E+ +S A + + N+ + L +D RL QI ++SNA+ F++ G ++++ Sbjct: 446 EIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLVSNAIKFTA-GGRIMIE 504 Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINL 767 A D+G D V + G I D +F+ FV+ ++ G+R G GLGLSI + Sbjct: 505 ADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRNTGTGLGLSISQRLATA 564 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + S + R+P Sbjct: 565 LGGELGAESEPGDGSVFWLRLP 586 >gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 997 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL EA +A +K+ F+ ++S+ELR+PL I G T LL + SL +Q +YV Sbjct: 605 ALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQGMTQLLAAT---SLTPEQREYVRAA 661 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 S L L+ DILDL+ V++G + L L DLL+ V + E I + Sbjct: 662 LVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLADLLSAVAAAFMPACLEAGIDWGTEV 721 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726 + G D R+ QI ++ NA+ F+ G V L+ A G F+V + Sbjct: 722 APGVPEILFGDEGRVRQILYNLVGNAVKFTKTGG-VRLEVWAGPVDASGCGSLFFAVTDT 780 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP + +F F RR G GLGL+IV ++L G +S+ S T Sbjct: 781 GVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAIVRRLLDLMQGTISVESEVGRGTRC 840 Query: 785 NCRIP 789 C +P Sbjct: 841 VCALP 845 >gi|253578663|ref|ZP_04855934.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849606|gb|EES77565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 943 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E E + A++ K +F+ H+S+++R+P+ I+GFT + + + + + +E I Sbjct: 553 MAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIMGFTGI---AMKNNPSDEVKNCLEKID 609 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673 SS LL+L+ND+LDL V++G +K N L + + + +I K+ Sbjct: 610 ESSEHLLSLINDVLDLTRVESGKVKYNPVPTDLKSITDFALDITKGFLTNRDISFKIQRE 669 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD-FI---FSVKNNG 727 + K+ + + D RL + ILSNA+ F+ G T+ +A GD +I + + + G Sbjct: 670 EAKIPNVLVDSVRLRDVLVNILSNAVKFTPDGETITFEARCQEKGGDGYINMHYRISDTG 729 Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E+ K VF F R Q G GLG++IV+ ++++ GG +S+ S TT Sbjct: 730 IGMSEEFTKEVFEEFAQEDSDVRTQYHGAGLGMAIVKKYVDMMGGTISVQSKKHEGTTFT 789 Query: 786 CRIP 789 IP Sbjct: 790 VDIP 793 >gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 802 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 7/237 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVT ERAL E A+ K++F+ +S+E+R+PL ++G + + L+ Sbjct: 400 NVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHEIRTPLNGVLGMAQAM---AMDELS 456 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + ++ I S LL ++ND+LDL+ ++AG + L + + +L+ V + A Sbjct: 457 PAQRERLDVIRQSGESLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAE 516 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + ++ ++ G + D R+ QI ++SN + F+ +G+ V ++ R G F Sbjct: 517 AKGLGFEIAVARNARGLYRGDPIRVRQILWNLVSNGLKFTDRGA-VEVRVRRAQGLLAFE 575 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V++ G I + ++F +F RR G GLGL+I L GG ++ S+ Sbjct: 576 VRDTGIGIAPEQLANLFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESA 632 >gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1] gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1] Length = 1049 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 34/265 (12%) Query: 543 VNVTDSVRAERALTEKNEALR----KADEI----------KNSFVQHVSYELRSPLTNII 588 VN+T +AE L + NE L +A+E+ K+ F+ ++S+E+R+P+ I Sbjct: 481 VNITKRKQAEEELLQANEQLENATARANELAVQAEAANHAKSEFLANMSHEIRTPMNGFI 540 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G T LL ++L +Q QY + +S LL L+NDILD + ++AG +++ L Sbjct: 541 GMTMLLLDTEL---TEEQRQYAGIVKSSGESLLVLINDILDFSKIEAGKLEIETLDFDLQ 597 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707 LL++ + A K H+ + + ++ + D RL QI + ++ NA+ F+ KG Sbjct: 598 SLLDDFAATTAFKTHDKGLELLCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEKGEV 657 Query: 708 VIL------------KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 I + D+ + FSV++ G IP D +F +F R+ Sbjct: 658 AIRVKTVGEACQTGQTSLNDDASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKY 717 Query: 753 -GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I + + GG + + S Sbjct: 718 GGTGLGLAISKHLAEMMGGEIGVES 742 >gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 854 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+ N L A +K+ F+ ++S+ELR+PL I+G T++ G L+ ++ + Sbjct: 463 RELSIANLNLAHAARVKDEFLANMSHELRTPLNAILGRTEMCLDGFYGPLSDGATKALHT 522 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL L+ND+LD+A +++G L I ++++ + I+ + + +I I Sbjct: 523 IEESGRHLLELINDVLDVAKIESGHADLELQLIAVDEVCAASLRLISQQALKKHIHINQE 582 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFI-FSVKNNGSSI 730 D ++ AD +R+ QI +L+NA+ F+ +G + L D D + F V + G I Sbjct: 583 IDPQVDLIHADARRIKQILINLLNNAVKFTPQGGNIGLTVTGDREQDLVHFIVWDTGIGI 642 Query: 731 PEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 D +F F +S AH G GLGL +V S + LHGG V + S+ Sbjct: 643 APDQIGRLFQPFTQIDSSLSRAH----EGTGLGLHLVASLVRLHGGSVQVEST 691 >gi|224369325|ref|YP_002603489.1| two-component sensory histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223692042|gb|ACN15325.1| two-component sensory histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 448 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 564 KADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 KADE I++ F+ +S+E+R+PL+++ +++ LG +N +Q ++++ + T + + Sbjct: 212 KADEDIRSDFIATLSHEIRTPLSSVQESVNMIIEEILGPVNERQKKFLKLAGSEITRITS 271 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N +LD++ ++AG K N + N L+ E QS+ T + +K + + + Sbjct: 272 LLNHLLDISMLEAGTQKSNPAPFDPNQLIVEAIQSLDTTAKRKHTVVKAHTLIRAPRVMG 331 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + + ++Q+ I+ NA+ FS + S V L +R++G F++ +NG IP + +F Sbjct: 332 EEKEIMQVLMNIIGNAIKFSDENSLVDIWLSKSREDGFLSFNISDNGPGIPREKHGLIFK 391 Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 R+ R GVGLGL+I + HGG + + ++ D+G T Sbjct: 392 RYYRAEEVRNHMSGVGLGLNISRRIVQSHGGKIFVENNIDKGCT 435 >gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra magnipapillata] Length = 566 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +VT + L + +A A+ K+ F+ ++S+E+R+P+ +IG T+LL + + Sbjct: 32 LTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDT---T 88 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+++Q +Y+ + +SS LL ++NDILD + ++AG M + L + + +++ + Sbjct: 89 LDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLR 148 Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG 717 H+ + + V D + V D RL Q+ IL NA+ F+ +G V I + NG Sbjct: 149 AHDKGLEVVWDVAPDVPR-ALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNG 207 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + +V + G IP + S+F+ F R+ G GLGL+I + GG + Sbjct: 208 KPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 267 Query: 774 ISSS 777 + S+ Sbjct: 268 VEST 271 >gi|161508039|ref|YP_001578006.1| two-component sensor [Lactobacillus helveticus DPC 4571] gi|160349028|gb|ABX27702.1| Two-component sensor [Lactobacillus helveticus DPC 4571] Length = 382 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +YV+ + + + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN +++ + +L +V + + I IK+ + K + A Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA+ + + + L A N + V+NNG IP+ K +F+R Sbjct: 264 DAEKLVRVYNNLISNALKYGIGATQIKLVANLVNKQEVELRVENNGEPIPKKSLKKIFDR 323 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI E ++LH G + SD+ T+ R+P Sbjct: 324 FYRVETSRNTKTGGTGLGLSITEGVVDLHHGTIR-CESDKNWTSFIIRLP 372 >gi|86608725|ref|YP_477487.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557267|gb|ABD02224.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 282 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 7/236 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620 L+K +I+++F+ VS+ELR+PLT+I LLK S ++ L KQ QY+E + + Sbjct: 47 LKKLSQIRDNFLAAVSHELRTPLTSISLSVHLLKLSYQVSPLTPKQIQYLEVLEQACERE 106 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 ++L+ND+LDL + +KL + L LL + +M + ++V D L + Sbjct: 107 ISLINDLLDLQNLSGNTLKLPSEQVNLPLLLAPLINRFQDRMRKRQQTLEVHWDPHL-PY 165 Query: 681 VADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738 + RLL+ + ++L+NA F+ G ++L+ D + + N G++IP + + + Sbjct: 166 LHTHPRLLERLVCELLTNAHKFTPAGKHIVLEVVALGSDRWELRLTNTGTTIPLEEQERI 225 Query: 739 FNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F +F H Q+ G GLGL++ ++ N GG + + S+ T I R+P+ E Sbjct: 226 FEQFYRIPHSDPWQQGGTGLGLALAQAIANHLGGSLQVESTAHQTTFI-LRLPAAE 280 >gi|227889300|ref|ZP_04007105.1| sensor histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227850102|gb|EEJ60188.1| sensor histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 385 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 132/234 (56%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N +F+ V+NNG IP+ + Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LH G++ S+ E +T+ ++P Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHSGNIKCQSTSE-LTSFIIQLP 374 >gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum] Length = 1966 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 17/252 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L E +A +K E K F+ ++S+E+R+PL I G + L + L N +Q Y Sbjct: 1277 EQRLKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDTPL---NGEQLDYCH 1333 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS SS LL+++NDILDL+ V+AG+M++N +N L+ + + ++ ++ + Sbjct: 1334 TISQSSDGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSF 1393 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFI--FSV 723 I + + V DR RL Q+ ++ NA+ F++KG +VI A G+ + F Sbjct: 1394 IVEDDVPPVVCGDRVRLRQVMLNVIGNAIKFTTKGEVFSRWSVIKDAQVGEGEVMLQFEC 1453 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G + +F F + + + G GLGL I + LHGG ++ S Sbjct: 1454 HDTGPGFDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKG 1513 Query: 782 TTINC----RIP 789 +T C R+P Sbjct: 1514 STFICSSKFRLP 1525 >gi|288918897|ref|ZP_06413241.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288349749|gb|EFC83982.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 1412 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 18/254 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EK E L + + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ + E I Sbjct: 875 GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETI 934 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKV 671 ++ + LL L+NDILDL+ V+AG M ++ + L + V E + I V Sbjct: 935 HSAGSELLGLINDILDLSKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISV 994 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---------- 720 SD FV D QR+ Q+ +LSNA+ F+ G+ + + A + F+ Sbjct: 995 TSDVPE-EFVTDEQRIQQVLKNLLSNAVKFTDSGTVRLDVSVASPDTPFVAPSLRSAPMV 1053 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+V + G + + + +F F RR G GLGLSI + L GG +++SS Sbjct: 1054 LSFAVSDTGIGVAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1113 Query: 777 SDEGVTTINCRIPS 790 +T +PS Sbjct: 1114 QIGQGSTFTLFVPS 1127 >gi|160882577|ref|ZP_02063580.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483] gi|156112021|gb|EDO13766.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483] Length = 674 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 431 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 488 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ ++ + Sbjct: 489 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 548 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ +G T+ + IFSV + G Sbjct: 549 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 608 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 609 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 659 >gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 594 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 151/293 (51%), Gaps = 16/293 (5%) Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 +++T+ +E+KS Q ++ + L++++ P+ + NVT V + ++E Sbjct: 316 SLLTTVINEKKSCQ-IIKTWVNKKLKFTLSPIIDNNE-----NVTGCVVLVQDISES--- 366 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 + ++++ F+ +VS+E R+PLT I G + L G++ K+ +Y I + + I Sbjct: 367 -ERLEQLRKDFIANVSHEFRTPLTVIKGSIEALND---GAIEKKEDIERYYSRILSETKI 422 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LV D+L+L+ + +G + +N + + LL++V +S+ T + I I+ + Sbjct: 423 LQRLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIEAVPP 482 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL Q+F+ + NA+ +S + + + ++ A G + + G I E+ V+ Sbjct: 483 VLGDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAV-KGTLEIKIADKGYGISEEELPYVW 541 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF + G GLGLSI + I LHGG+V++ SS E TT+ +P E Sbjct: 542 ERFYKTDKSRESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLPYSE 594 >gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 818 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 6/245 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQ 608 AER L + A K+ F+ ++S+ELR+PL IIGF ++L++ + GS +K + Sbjct: 562 AERLLEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPIAK-AG 620 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I+AS LLNL+NDILD++ ++AG ++L +LL ++ + + E I Sbjct: 621 YASDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAMERRID 680 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +++ L + D + QI +LSNA+ F++ +V +K D + +V + G Sbjct: 681 LRLEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAVSDTG 740 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I + + VF F V N + G GLGL++ LHGG + I S TT Sbjct: 741 IGIRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEGTTAT 800 Query: 786 CRIPS 790 R+P Sbjct: 801 LRLPP 805 >gi|302864835|ref|YP_003833472.1| ATP-binding region ATPase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302567694|gb|ADL43896.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 1454 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L EK + L +A K+ F+ ++S+ELR+PL +++ LL + +L++KQ ++ Sbjct: 1027 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENPERNLSAKQIEFA 1086 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + + LL+L++DILDL+ ++AG M + + I ++ V+Q+ A + E + + Sbjct: 1087 RTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGLDFQ 1146 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719 V +S + V D QRL QI +LSNA+ F+ G+ T+ + A DN F Sbjct: 1147 VRVSRDLPPALVTDAQRLQQILRNLLSNAVKFTDNGAVTLRIGLAADNAVFDVPALTNAQ 1206 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I +D +F F RR G GLGLSI L GG +++ Sbjct: 1207 RVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGTITV 1266 Query: 775 SSSDEGVTTINCRIP 789 SS+ +T +P Sbjct: 1267 SSAPGQGSTFTLFVP 1281 >gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32] gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32] Length = 937 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 +++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + + D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|83646921|ref|YP_435356.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634964|gb|ABC30931.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 433 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-LLN 622 + D I+ +V VS+ELR+PLT I G LL++ + N Q ++ ++ ++T+ L+ Sbjct: 199 RLDHIRREWVAVVSHELRTPLTAIQGSLGLLQSGRFDH-NPDQKAHMLQMACNNTVRLVK 257 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN++LD+ +++G + L +++ +L+ E +IA N+ ++ A Sbjct: 258 LVNEVLDIERIESGRLTLELTSLNPRELIQEAVDTIAPAASLKNVSLRYQPQDAT-PIKA 316 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RLLQ+ +LSNA+ FS G + +K V + G IP+ + K +F RF Sbjct: 317 DHDRLLQVLQNLLSNALKFSPSGGVIEVKLKDKPEQLNIDVIDQGPGIPQQLTKRLFTRF 376 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 R G GLGL I ++ I H G + + EG CR Sbjct: 377 AQATTAANRSTGGSGLGLYISKAIIEQHQGRIGFENQPEG----GCR 419 >gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 641 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 10/232 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +A +K +F+ ++S+ELR+PL IIG +LLK ++L Q Q V+ Sbjct: 251 EEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQTEL---EEAQKQMVK 307 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS LL +VNDILDL+ +DAG L+ + + +L + + TK +E + + + Sbjct: 308 LLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSIELMRTKANEKLLDLNL 367 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNN 726 D +L ++ D RL QI ++SNA+ F+ KG + + GD+I F VK+ Sbjct: 368 EIDPRLPKYIETDPLRLNQILMNLISNAIKFTEKGYVSLRVNQLSHEGDYITVKFEVKDT 427 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G I + +F + + + G GLGL IV+ + L G + +S Sbjct: 428 GIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVELQNGKIDFNS 479 >gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 534 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714 K + + V+ L +F D++RL+Q+ + ++NA+ F++KG ++ Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 D + FSV + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 456 DTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512 Query: 774 ISS 776 + S Sbjct: 513 VES 515 >gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus] Length = 1177 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 12/258 (4%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E ++ L ML + D RA+ +L ++A A + K++F+ ++S+E+R+P+ Sbjct: 481 EARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNG 538 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++G +LLK + ++ +Q VE S S+ LL ++N ILD + ++AG +++ + Sbjct: 539 VLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFN 595 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705 L DL+ EV +A + H+ + + L ++ D R+ QI + +L N++ F+ +G Sbjct: 596 LPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERG 655 Query: 706 STVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 + +A D F +++ G I D+ +F F RR G GLGLS Sbjct: 656 EVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLS 715 Query: 760 IVESFINLHGGHVSISSS 777 I + + L GG + + S+ Sbjct: 716 ICRNLVELMGGTIGLESA 733 >gi|329889991|ref|ZP_08268334.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] gi|328845292|gb|EGF94856.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Brevundimonas diminuta ATCC 11568] Length = 595 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 24/287 (8%) Query: 517 TLELLSDSVLEYSIIPLP-NAQTMLTFVNVT----DSVRA----ERALTEKNEALR---- 563 + LL D V + P A ++ V +T + +RA + L E+ EA R Sbjct: 144 AVNLLGDPVFWPFVALAPFTAASLFVLVTMTMLREERIRAFQEHQAHLIEELEAARDKAD 203 Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 A+E K++F+ +S+ELR+P+ ++G LL ++L Q +Y+ I S LL+L Sbjct: 204 AANEAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---EGAQREYLAIIRNSGDNLLSL 260 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +NDILD+ ++AG M + L DL + + + +G + + V Sbjct: 261 LNDILDMTKIEAGRMNFEAVDVNLEDLHRRIVGPFEAQAEAKGLNFIAEFEGDVPAVVRG 320 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D R+ Q+ +LSNA+ F+ +G+ + R + F F V ++GS I +D + Sbjct: 321 DPLRVCQVVQNLLSNAVKFTDQGAVRFVTRGRRVSERRVAFEFVVIDSGSGISDDDMDQL 380 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F F RR G GLGL+I N+ GG +S++SS EG T Sbjct: 381 FQPFTQVDASSTRRFGGTGLGLTISRRLANIMGGEISVTSSLGEGST 427 >gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 576 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 68/419 (16%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E KY +V ++ +EG+ DGR+ +NPA ++ SP +R + + Sbjct: 169 EEKYRGIV-------ENAAEGIFQSSLDGRLISANPAVATIL----GYASPREMMRRVKS 217 Query: 486 TCSRYYNESDGWDLFAAIITSFDDER-----------------------KSLQGTLELLS 522 + D A + +D + + G E Sbjct: 218 IIDQTVAREDDRQRIRAELERYDQVKNLEVQLVTKSGDLIWGLINARRIRDAAGEAERF- 276 Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEAL------RK--------AD 566 D L+ I QT+L + + + AER LT NE L RK A+ Sbjct: 277 DGSLQDVTIRKQAEQTLLRYHDELERRVAERTAELTRANERLTHEVTIRKRAEEAADAAN 336 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQSQYVEYISASSTIL 620 K+ F+ VS+E+R+PLT+++GF +++ ++L + +Q + E I + I+ Sbjct: 337 RAKSEFLSMVSHEIRTPLTSVMGFAVIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGII 396 Query: 621 L-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVI 672 + +L+ND+LDLA ++AG M + + +++ V + + + +K Sbjct: 397 VSEGERLKHLINDVLDLAKLEAGKMAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTS 456 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G+L + DR RL+Q+ ++SNA+ F+ +GS V +A +G + V + G IPE Sbjct: 457 IQGRLPEVIGDRDRLIQVLVNLVSNALKFTEQGS-VTCRARTADGYVVIDVADTGIGIPE 515 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF +F + + +G GLGL+I + + HGG +S S +T +P Sbjct: 516 AEQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALP 574 >gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1954 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 24/267 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L + + K+ F+ ++S+ELR+PL +++ LL + +L +Q +Y Sbjct: 1235 QARRSLEEKAEQLSLSSKYKSEFLANMSHELRTPLNSLLILAKLLADNPEQNLTERQVEY 1294 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S LL L+NDILDLA +++G + ++ I ++L ++++S N+ Sbjct: 1295 AATIFSSGNDLLELINDILDLAKIESGTIAVDIEPISFSELGRDLERSFREVAINRNLDF 1354 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----------------STVILKA 712 +V S+ F D +RL QI +L+NA F+ G T + +A Sbjct: 1355 QVQFSELLPARFHTDPKRLRQILKNLLANAFKFTEAGHVRLTVEPAVAGWSADQTFLNQA 1414 Query: 713 AR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 AR + G F V + G IP D + +F F RR G GLGLSI Sbjct: 1415 ARVAPRGETGVIAFRVSDTGIGIPLDKQRIIFEAFQQADGTTSRRYGGTGLGLSISREIA 1474 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 L GG + + S +T +P E Sbjct: 1475 RLLGGEIRLESQVGRGSTFTLYLPQLE 1501 >gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6] gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6] Length = 771 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 7/235 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE AL E +A K+ F+ +S+ELR+PL +I+GF LL Sbjct: 376 DITDRRAAEIALRTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDA----A 431 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +V +I + LL L+N++LD+A ++AG + LN + + L +L E ++ Sbjct: 432 KTQKAHVGHILRAGQHLLTLINEVLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMAT 491 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + I ++ + +G VADRQRL Q+ +LSNA+ ++ + V ++ D Sbjct: 492 DAGIELQPLPTLAADIG-IVADRQRLTQVLLNLLSNAIKYNRRDGQVSIEVTVDAQRIGV 550 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G I D +F F G GLGL++ +S + G + + S Sbjct: 551 SVCDCGKGIAADHLGQLFTPFERLGADPNVEGSGLGLALSKSLLENMDGQLHVHS 605 >gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1490 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLN 622 K + +K F+ VS+ELR+PLT++ LL + K+ NS + + I+ T L+ Sbjct: 1255 KVERMKAEFISVVSHELRTPLTSMQAALSLL-SEKIIDPNSPEGEATIQIATEGTDRLVR 1313 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LVNDILDL +++G ++L S + DL+ + ++ NI +K I L SF Sbjct: 1314 LVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFI----LCSFQI 1369 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735 AD R+LQ+ + +LSNA+ FS ST+ L G F V++ G IP Sbjct: 1370 EADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSAHL 1429 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 S+F RF V + + G GLGL+I S + HGG + S +T +P K Sbjct: 1430 DSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLPKK 1487 >gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483] Length = 534 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714 K + + V+ L +F D++RL+Q+ + ++NA+ F++KG ++ Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 D + FSV + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 456 DTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512 Query: 774 ISS 776 + S Sbjct: 513 VES 515 >gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 751 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L + E ++ K++F+ VS+E+R+PL ++G DL+ + L + +Q ++V+ Sbjct: 358 ERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTATPL---SDEQRRHVD 414 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + L L++D+LDL ++AG ++L VL L+ V + + +R + Sbjct: 415 VFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAKGLRFVL 474 Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729 D L ++V+ DR+R+ Q + +L NA+ F+++G V L+AAR G F+V++ G Sbjct: 475 DVDEDLPAWVSGDRRRVEQALTNLLGNAIKFTARGE-VSLQAARSAAGGVRFTVRDTGIG 533 Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I VF FV R R G GLGL+I + GG + + S +T Sbjct: 534 IAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVGSTFTLE 593 Query: 788 IP 789 +P Sbjct: 594 LP 595 >gi|282852926|ref|ZP_06262267.1| sensor histidine kinase/response regulator [Lactobacillus gasseri 224-1] gi|282556034|gb|EFB61655.1| sensor histidine kinase/response regulator [Lactobacillus gasseri 224-1] Length = 339 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ ++ K+ + +VS+++R+PLT+IIG+ LLK+S+ LN Q++Y++ + Sbjct: 103 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYFGLLKSSE---LNEDQAKYIKIAYDKALQ 159 Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + L D+ + T+ + KL + + +N +L +V + + NI V++ + Sbjct: 160 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 219 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 AD + ++++ + ++SNA+ + + + L A + N F+ V+NNG IP+ + Sbjct: 220 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 279 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V ++ + G GLGL+I +S ++LHGG + S+ E +T+ ++P Sbjct: 280 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 332 >gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] Length = 660 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 128/229 (55%), Gaps = 13/229 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608 +E L + E +A+++K++FV ++S+E+R+PL I+GF+ L+ +GS+ N++ + Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667 Y + + +S +LL L++D+LD++ +++G ++ Y ++N N + + K + +I Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFKYEWCELVNHCQNMITLTNRNKTMDVDI 531 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725 ++++ + + D RL QI +L+NA+ F+ G ++ L D +FSV + Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ IPED + VF RF Q G GLGL+I + I GG + I Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636 >gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 468 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 21/251 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +A + +A+ K DE K F+ +VS+ELR+PL+ I G+++ L S L ++ + Sbjct: 222 RLAQAFNQMADAIAKEDERKREFLANVSHELRTPLSYIKGYSEAL-LSGLARTKEEEQSH 280 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATK--MH 663 + I + + LV D+LDLA ++ + L + + V+ D+++ + I K Sbjct: 281 LRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIEDVMDMYRPIITQKRLTL 340 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI 720 ++ ++I DG D RL Q+ +L NA+ ++ +G V ++ +R G+ + Sbjct: 341 TCDLDYELIVDG-------DADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRFSDTEGELV 393 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +++ G IP+D + RF V A + G GLGL+IV+ + LHGG + S Sbjct: 394 --IRDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHGGAIQFDSDL 451 Query: 779 EGVTTINCRIP 789 TT++ R+P Sbjct: 452 GQGTTVSVRLP 462 >gi|260438167|ref|ZP_05791983.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876] gi|292809355|gb|EFF68560.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876] Length = 986 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 129/242 (53%), Gaps = 7/242 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + V + ++ + EK KA+++K++F+ +S+E+R+P+ I+G D++ S Sbjct: 375 LLLIMAVVNFIKNNIRIREKAVYALKANQLKSNFLASMSHEIRTPINAIMGMNDMILMS- 433 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + +Y I ++ LL+++NDILD + +++G ++L +T +LN+V I Sbjct: 434 --DPDKAIKEYAGNIRSAGDTLLSIINDILDFSRIESGKIELVENTFSTISMLNDVIMMI 491 Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716 K + V +D ++ SF AD ++ QI + +L NA+ ++ KGS +I+K + Sbjct: 492 KGKAENKGLEFIVKADKEMPSSFKADEVKIRQILTNVLGNAVKYTEKGSIELIMKGSYVE 551 Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ +V + G I E+ +FN+F G GLGLSI + ++ + GG +S Sbjct: 552 DKYVLNVTVTDTGIGIKEEFKDKIFNKFERADTMSSVEGTGLGLSITKKYLGIMGGTISF 611 Query: 775 SS 776 S Sbjct: 612 DS 613 >gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 836 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 2/229 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608 + ER L + +A +K+ F+ VS+E+R+PL IIGF +++ + G + N++ Sbjct: 578 KVERELDDARREAERASALKSDFLAKVSHEIRTPLNAIIGFAEVIMEERFGPIGNARYKD 637 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y++ I +S +++++LVND+LDL+ ++AG M L++ + N ++ E + + + Sbjct: 638 YLKDIHSSGSLVMSLVNDLLDLSKIEAGKMDLSFEAVDANRIVTECVSIMQPQASSARVV 697 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727 I++ +L AD + + QI +LSNA+ F+ G VI+ A D +++ G Sbjct: 698 IRLSLAPQLPHIFADERSVRQIVLNLLSNAIKFTQGGGQVIVSTALNDENCAALRIRDTG 757 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + E K F G GLGL + ++ + + SI S Sbjct: 758 VGMSEGDLKVALEPFGQAPRARGSGGTGLGLPLTKALVEANRASFSIKS 806 >gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1349 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 15/250 (6%) Query: 538 TMLTFVNVTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T+L ++T R+E AL + A+ R A++ K F+ ++S+E+R+P+ IIG LL+ Sbjct: 670 TVLAIQDITYKKRSEEAL--RYAAVERAANKAKGEFLANMSHEIRTPMNGIIGMASLLED 727 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + LN++Q ++ IS+S+ LL ++NDILD + ++AG + L + +V Sbjct: 728 T---PLNNEQKDLLQTISSSAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVTA 784 Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +A + ++I + K+ S V D RL Q+ + NA+ F+SKG VI++A D Sbjct: 785 LMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLTGNAIKFTSKGE-VIVRALVD 843 Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 D F + + G +P+ S++ F RR G GLGL+I + L Sbjct: 844 EEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRLM 903 Query: 769 GGHVSISSSD 778 GG + S + Sbjct: 904 GGKIGAESKE 913 >gi|298480889|ref|ZP_06999084.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272912|gb|EFI14478.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 623 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 378 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 435 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ + + Sbjct: 436 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 495 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ +G T+ + +FSV + G Sbjct: 496 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKRGKITLDFSVNEETQMAVFSVTDTG 555 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 556 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 606 >gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1096 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 10/254 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++TD R ER L + +A A+ K+ F+ ++S+E+R+PL I+G L ++ Sbjct: 692 FTDITDRKRYERDLRQAKDAAEAANVAKSEFLANMSHEIRTPLNGIMGILHLFESQ---D 748 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q + +E + S+ L L++DILDLA +++G + + + +L Sbjct: 749 LPGEQKKLLELANTSAGRLNGLLSDILDLARIESGKLAIQSAPFAPRELRASTLGLFTLA 808 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717 N+ ++ I D L S + D RL Q+ ++ N++ F+ G + G Sbjct: 809 AQGKNLSLEFILDDTLPSMLEGDESRLRQVLFNLVGNSLKFTRAGFVRVEVGPLPGGASP 868 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 +F V ++G I + K +F FV RR G GLGL+IV+ + L G + + Sbjct: 869 RILFCVTDSGPGISDHQLKDIFTPFVQGEDSYVRRHQGAGLGLAIVKRIVGLMDGCLCVD 928 Query: 776 SSDEGVTTINCRIP 789 SS G TTI +P Sbjct: 929 SSANG-TTICFSLP 941 >gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] Length = 921 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT L S Q Y++ I S+ LL Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQ----LTSTQKDYLQTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L+EV +A HE + + + I F Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736 V D RL QI + +L NA+ F+ +G+ I R +K+ G I E Sbjct: 400 VGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRRQESLQVLLEIQIKDTGIGIAEAQQT 459 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F + Q G GLGL I + + GG +S S TT C + Sbjct: 460 QLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTV 513 >gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 779 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L + L+ +L E ++ Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAA 495 Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI ++ + + ++G VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 496 DANIELQPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ DEG Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|184154584|ref|YP_001842924.1| two-component system histidine kinase [Lactobacillus fermentum IFO 3956] gi|183225928|dbj|BAG26444.1| two-component system histidine kinase [Lactobacillus fermentum IFO 3956] Length = 380 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 33/272 (12%) Query: 535 NAQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 N Q ++T VN +T +++ ERA +EK+ K+ + +VS++LR+PLT+IIG Sbjct: 122 NQQHVITSVNALVDTITQAMQEERA-SEKS---------KDELITNVSHDLRTPLTSIIG 171 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTI-------LLNLVNDILDLATVDAGIMKLNY 642 + LG + Q Q E I S I + NLV D+ + V +N Sbjct: 172 Y--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQMKNLVEDLFEYTKVQQHGAPVNL 223 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 T+ L LL +V S + + + I V + S AD ++L ++FS +++NA+ + Sbjct: 224 MTVDLGQLLEQVGASFELEADKKGMAINVSCEPTPLSITADPEKLGRLFSNLVANALKYG 283 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 S + L A + + +V ++G IP + K +F RF V ++ G GLGL+I Sbjct: 284 HGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFERFYRVESSRNKATGGTGLGLAI 343 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 V+S + LH G V+ + SD+ T +P K+ Sbjct: 344 VQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374 >gi|182420546|ref|ZP_02643812.2| sensory box histidine kinase [Clostridium perfringens NCTC 8239] gi|182379796|gb|EDT77275.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] Length = 821 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I +D + D ++ +I +LSNA+ F+ G + + D Sbjct: 659 ESKNIDIIFDTDCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIR 718 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 779 GSEFSILLPN 788 >gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 779 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 13/247 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++D AE AL E +A K+ F+ +S+ELR+PL +I+GF LL S Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + +I + LL L+N++LD+A ++AG + L + L+++L E ++ Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAA 495 Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + NI +K + +G VADRQRL+Q+ +LSNA+ ++ V ++ + Sbjct: 496 DANIELKPLPSLPDDIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTI 554 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 SV + G I + +F F G GLGL++ +S + + G +S+ ++ DEG Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614 Query: 781 VTTINCR 787 CR Sbjct: 615 -----CR 616 >gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] Length = 770 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 25/347 (7%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 T +++ +G+ + PDG I+ NPA R ++ E+ L G I + R E Sbjct: 402 TFENIIDGLILMRPDGSIQSLNPAARVMFGYAEDELI-GQDISVLLPDGVRQEREGAVRK 460 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---AL 555 + I E+ + T E +++ ++ NA+ + + ++D RA+ L Sbjct: 461 ISCFI------EQHLVGETFE--AEACMK-------NAEPLPVELTLSDVQRADGKLFGL 505 Query: 556 TEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQYVEY 612 ++ + RK E+ K+ FV V++ELR+PLT+++G LL+ + K S ++ Sbjct: 506 MIRDISARKQMEVMKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQKASTLLDM 565 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S L +LVNDILDL + AG ++ + +DL+ +V +S E++++ + Sbjct: 566 AQRSCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEEHDVQFVLD 625 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIP 731 D R Q +LSNA +S G TV IL ++G SV +NG IP Sbjct: 626 LKADDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISVADNGPGIP 685 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 E+ +F+RF RR G GLGL+I ++ + G +S + Sbjct: 686 EEFQPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDT 732 >gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822] Length = 2003 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 8/237 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + + VR + E EA +A K+ F+ ++S+ELR+PL I+G+ + K K +L Sbjct: 1526 LQLEQEVRERQRAEEIAEAANRA---KSEFLANMSHELRTPLNGILGYAQICKKDK--NL 1580 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q +E I LL L+NDILD++ ++A M+L + D L + + K Sbjct: 1581 NEQQKNRIEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKA 1640 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + I + L V D +RL QI +L+NA+ F+ KGS + K + G F Sbjct: 1641 EQKGISLIFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGS-ITFKVSYQKGKVNF 1699 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777 V++ G I + + +F F ++ G GLGLSI + GG +++ SS Sbjct: 1700 QVEDTGIGIAPNQLEEIFLPFQQVGEYSRKTEGTGLGLSISRQLAQMMGGTITVKSS 1756 >gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] Length = 1200 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +K+ L ++ + K+ F+ ++S+ELR+PL +I+ + L+ S+ L+ + +Y + Sbjct: 519 IQQKSIELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTESE--DLDEQYVEYAAVMQ 576 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL L+++ILDL+ +++G M L + L ++ ++++ + N+ +KV ++ Sbjct: 577 SSGQGLLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLPMAKDKNLELKVETE 636 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIP 731 + + D+ RL QI +LSNA+ F+S GS + L+ + D IF V + G I Sbjct: 637 AQAPQMLQTDKLRLEQILKNLLSNAIKFTSTGS-ITLQVSGDEAHTKIIFKVIDTGIGIA 695 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +D + VF F QR+ G GLGLSI L GG +++ S++ + +P Sbjct: 696 KDKMRLVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLESTEGKGSEFTLTVP 755 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 135/259 (52%), Gaps = 11/259 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V++ + R++ L A++ K+ F+ ++S+E+R+PL I+G LL+T++ Sbjct: 1050 THVDINERKRSQADLLSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE-- 1107 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 N +Q +Y+ + S+ L L++DILD++ ++AG M + + + L + +++ T Sbjct: 1108 -PNDEQKEYLAGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDT 1166 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 + + I D +L + + D RL QI ++ NA+ F+ KG ++ + + + Sbjct: 1167 DAQGKGLVLDFIWDDELPTALIGDEARLRQILFNLVGNAIKFTDKGEVLVEASLLPSPNT 1226 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772 + +V + G I E+ K +F FV ++ + +G GLGLSIV +L GG + Sbjct: 1227 SSVRVLLTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDI 1286 Query: 773 SISSSDEGVTTINCRIPSK 791 SI S+ TT+ +P K Sbjct: 1287 SIDSALGEGTTVYLSLPFK 1305 >gi|254487059|ref|ZP_05100264.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101] gi|214043928|gb|EEB84566.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101] Length = 1047 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 8/225 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K D+IK+ FV VS+ELR+PLT+I G L+ S L + +E ++ L N Sbjct: 681 KKLDQIKSEFVSTVSHELRTPLTSIKGALGLIDVSARDKLPETTMRLIEIARTNADRLTN 740 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSF 680 +VNDILDL + +G + + + + +++ Q + + HEN + ++ + Sbjct: 741 IVNDILDLEKISSGEVDFDLMPVNIGEIVEAAVQEMMPFAQTHENKLVCELPEQPVFAT- 799 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 ADR R +Q+ + ++SNA +SS + V +K + I V+N G +PE +F Sbjct: 800 -ADRGRTMQVLANLISNACKYSSDHTEVCIKIEQLEDIAIVYVQNRGPGVPESFRNRIFQ 858 Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 F S A R G GLGL+I + GG + S G+T Sbjct: 859 AF-SQADGSDTRAKGGTGLGLNITRQIVRRQGGEIGFESIPGGLT 902 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 130/239 (54%), Gaps = 10/239 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602 ++T+ R L + KA++ K+ F+ ++S+E+R+PL I+GF +LL K K Sbjct: 406 DITEQKRTYLELNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDEK---- 461 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + K+ + ++ I SS L+++VNDILD + +++G++ + + D +++ + Sbjct: 462 DIKKQEKLKIIKDSSYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRA 521 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI 720 E NI IK+ D K+ F+ D R Q+FS +LSNA+ FS++ S V + DN + I Sbjct: 522 KEKNITIKLSIDDKIPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEI 581 Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + V ++G I ++F F R+ G GLGLSIV+ + L GG + ++S Sbjct: 582 YCEVLDSGVGISPSKTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNS 640 >gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 2099 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L+ KQ ++ Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + T LLNL++DILDL+ +++G + ++ I +++LL + + + ++ Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRSLSF 1525 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 V G + S + D +RL QI +LSNA F+++G + A +G Sbjct: 1526 AVEIGGDVTKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVALAASGWSPDHPSLRHA 1585 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G IP + + +F F R+ G GLGL+I NL GG + Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645 Query: 774 ISSS 777 + S+ Sbjct: 1646 LRST 1649 >gi|49477415|ref|YP_036048.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328971|gb|AAT59617.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 375 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 128 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 186 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 187 CEQYVSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 246 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + D +L D ++++F ++SN++ + G ++++ ++ + + +KN Sbjct: 247 NMSFCIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKN 305 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I +S LH G +++ S++ Sbjct: 306 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEK 361 Query: 779 EGVTTI 784 E V TI Sbjct: 362 ETVFTI 367 >gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1202 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 6/235 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616 + +AL + D K F +VS+E R+PLT ++G D+L S SL ++ +E + Sbjct: 320 RAKALAEIDRAKTEFFANVSHEFRTPLTLMLGPLEDVLTRSPALSLEDRER--LEVAQRN 377 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL LVN +LD + ++AG + Y+ L L ++ + + +++ V Sbjct: 378 ALRLLKLVNTLLDFSRIEAGRAQGAYAPTDLARLTADLAGVFRSAVESAGLKLIVDCPPL 437 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 DR+ +I +LSNA F+S G + ++ G+F S+++ G+ IP+D Sbjct: 438 PEPAYVDREMWEKIVLNLLSNAFKFTSSGE-IEVRLIVSQGNFELSIRDTGTGIPQDELP 496 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V++A G G+GL++V+ LH G V ++SS +T RIP Sbjct: 497 KLFERFHRVADARGRTHEGSGIGLALVQELARLHAGSVDVTSSLGQGSTFTVRIP 551 >gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 471 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 4/236 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ + L K D+++ + +VS+ELR+PL+ I G+++ LK + +Q QYV+ I Sbjct: 234 AINYMSSELAKLDQMRRDLIANVSHELRTPLSLIRGYSEALKDGVVKD-TEQQKQYVDII 292 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L LV+D+LDL+ +++G + +N ++ ++E+ + +N I + + Sbjct: 293 LDETARLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQIELTASA 352 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 D + AD R+ Q+ ++ NA++ + +I+ A + +G V + G I D Sbjct: 353 DDNIIVH-ADEGRIEQVLYNLIQNAINHTPTHGRIIVSAEKHDGKAFIQVSDTGRGISPD 411 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F++F H R+G GLGL+I + HG +++ S TT +P Sbjct: 412 DLPHIFDKFYKGEH--NRKGTGLGLTIARGILTAHGSDITVKSQPNQSTTFAFYLP 465 >gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 730 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 173/368 (47%), Gaps = 40/368 (10%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNESD 495 D ++ + V G DG++ +N F E+ L P HI ++I + S Sbjct: 80 DAMNSILVVVGVDGQVSQTNRVFTEDLHWTEDEL-PQIHIDSLFPKDILSGIREKNGASS 138 Query: 496 GWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQ----------TMLTFVN 544 G +++ S+ R L+ + L S+ L ++ + Q +LT + Sbjct: 139 G-----SLVVSYITHRGHLECEMPLHRSNGALTEAVYLVKGEQFYSHQGKLQGILLTATD 193 Query: 545 VTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ + E AL + AL+KA ++ K F+ +S+E+R+PL IIGFT L S Sbjct: 194 ISELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMSHEIRTPLNAIIGFTKLCLHS 253 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L KQ Y+ + +S L +L+ND+LDL+ ++AG +++ LN +L+ V+ Sbjct: 254 E---LTLKQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERVPFNLNQVLSNVRHV 310 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712 + + + + + + + + D RL Q+ ++ NA+ F+ KG + + Sbjct: 311 MWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIKFTDKGEVSVTVSRKKS 370 Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 AR + IF V + G + +D +F+++ RR G GLGL+I + +NL Sbjct: 371 RARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQKLVNLMK 430 Query: 770 GHVSISSS 777 G + I+S+ Sbjct: 431 GRIHINSA 438 >gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 671 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ A LR A E K+SF+ S+ELR+PL G L G + + Sbjct: 413 RDITERQRAETALRLASEAKDSFLAAASHELRTPLAAAKGHAHLALLKLGGETEAGPGKS 472 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ + LV D+LD++ + AG + L L+ L++E + +A + I + Sbjct: 473 LKIINRQIDRMAKLVEDLLDISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHV 532 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 + SD G++ DR RL Q+ + +LSNA+ +S +G V ++ ++ + + SV + G Sbjct: 533 EA-SDQLEGTW--DRGRLDQVLTNLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGV 589 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS---SDEGVT 782 IP++ +F RF AH + G+GLGL+I + + HGG + + S + EG T Sbjct: 590 GIPKEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGST 645 >gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 871 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 14/255 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT R E +L A K+ F+ ++S+E+R+PL ++G LL+TS+L + Sbjct: 468 DVTGQKRTEDSLRLAKSEAEAASLAKSEFLANISHEVRTPLNGVLGMLQLLETSRL---S 524 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +++V A L+ ++ DILD + ++AG + L + ++ +V ++ + Sbjct: 525 AEDAEHVATALACGRGLVRVLADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLSLECE 584 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGD 718 + + + G + +F+A D RL QI ++ NA+ F+ +G+ +V L + R + Sbjct: 585 KKELCATLDVAGDVPAFIATDAARLRQILFNVVGNAVKFTPRGTVHLSVSLASRRGEETH 644 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+V++ G IPED +++F F R+ G GLGL IV+ + L GH+++ S Sbjct: 645 LLFAVRDTGIGIPEDRIEAIFEPFTQIDGSLTRKYGGTGLGLGIVKRLVGLLDGHITVES 704 Query: 777 SDEGVT----TINCR 787 G T TI C+ Sbjct: 705 EPGGGTEFAFTIRCQ 719 >gi|260223382|emb|CBA33893.1| hypothetical protein Csp_B21310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 769 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 16/230 (6%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 NE A+ K+ F+ ++S+ELR+PL ++G LL+++ + N++Q Y++ + S+ Sbjct: 194 NEKADAANAGKSQFLANMSHELRTPLNGMLGMLSLLESTPV---NAQQDDYIQTANRSAK 250 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+NDILD + ++AG M L ++ L L+ +V+ + E + + V +D L Sbjct: 251 HLLSLLNDILDASALEAGKMTLKPESVHLPSLVGDVQALMRPVALEKRLVLSVKADKDLP 310 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFIFSVKNNGS 728 +V AD R+ QI ++SNA+ FS G+ + LKA D+ V + G Sbjct: 311 RWVLADGTRVKQIMLNLVSNALKFSEHGTVSVEVFSPAGEELKAG-DDVALKIRVTDEGM 369 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + D+ +F RF RR G GLGL I S GG + +SS Sbjct: 370 GMSADVLAKLFQRFEQGNASSARRHGGTGLGLEISRSLARRMGGDIEVSS 419 >gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 931 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + E A + K+ F+ +S+E+R+P+ ++G LL+ + +L+ Q +++ Sbjct: 393 ALDDARETAEAAAQSKSEFLACMSHEIRTPMNGVLGMLTLLERT---ALDQSQRNHLDTA 449 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVI 672 S+ LL L+NDILD + +++G + L +LLNE + +A + E I + I Sbjct: 450 QGSARNLLGLINDILDFSKIESGKFPIESVNFSLTNLLNETIRPLAIRAQEKGIELVSDI 509 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-NGDFIFSVKNNGSSI 730 +D SF D R+ Q+ + ++ NA+ F+ KGS TV +K D FSV++ G + Sbjct: 510 TDITSQSFKGDPTRISQVLTNLIGNAIKFTEKGSITVYVKQNDDIEPRLNFSVEDTGIGL 569 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + + +F F R G GLGLSI + L GG +S+ S++ Sbjct: 570 ASNQLEKLFQPFTQADSSTTRHFGGTGLGLSIAKRLTELMGGSISVVSTE 619 >gi|161522571|ref|YP_001585500.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189348557|ref|YP_001941753.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|160346124|gb|ABX19208.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189338695|dbj|BAG47763.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 760 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 136/272 (50%), Gaps = 19/272 (6%) Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A +++ V VT+ V A L N LR A+ K+ F+ + +ELR Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ S+ G + + I ++ L++D+LD++ + G ++L Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + + D+++ + + + + R+ V D + D RL Q+ + +L+NA + Sbjct: 428 KEAVRIGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486 Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 ++ G + L AR +GD + V+++G+ IP D S+F F R G+G+GL Sbjct: 487 TAPGGDIGLHVARSDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546 Query: 759 SIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 ++V+SF+ LHGG V S+ G+ +T +P Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLP 578 >gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] Length = 937 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKT L++ Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680 +++NDILD + ++AG + L L EV AT HE + + + D K+ Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ +G S + + D+ + F V++ G I E Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + ++ GG +S++S Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502 >gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 869 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863 Query: 788 IPS 790 +P+ Sbjct: 864 LPN 866 >gi|237720654|ref|ZP_04551135.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229450405|gb|EEO56196.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 690 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L EKNE L +AD++K F+Q++S+E+R+PL I+GF+ LL L + + Sbjct: 446 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 505 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + ++ + +S +L LVNDILDL+ +++G +N ++ N++ + ++ + E Sbjct: 506 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 565 Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +K+ ++ D QRL Q+ L+NA + KG + + + D I F Sbjct: 566 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 622 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP D SVF RF Q G GLGL+I + G V + S Sbjct: 623 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 676 >gi|228933206|ref|ZP_04096062.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826367|gb|EEM72144.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 288 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 41 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 99 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 100 CEQYVSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 159 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + D +L D ++++F ++SN++ + G ++++ ++ + + +KN Sbjct: 160 NMSFCIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKN 218 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I +S LH G +++ S++ Sbjct: 219 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEK 274 Query: 779 EGVTTI 784 E V TI Sbjct: 275 ETVFTI 280 >gi|160882190|ref|ZP_02063193.1| hypothetical protein BACOVA_00136 [Bacteroides ovatus ATCC 8483] gi|156112393|gb|EDO14138.1| hypothetical protein BACOVA_00136 [Bacteroides ovatus ATCC 8483] Length = 701 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L EKNE L +AD++K F+Q++S+E+R+PL I+GF+ LL L + + Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + ++ + +S +L LVNDILDL+ +++G +N ++ N++ + ++ + E Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576 Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +K+ ++ D QRL Q+ L+NA + KG + + + D I F Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP D SVF RF Q G GLGL+I + G V + S Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687 >gi|332521556|ref|ZP_08398010.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332042955|gb|EGI79154.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 403 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 11/239 (4%) Query: 543 VNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 VN+ ++ + L E KN+ ++ DE+ N F VS++L+SPL+NI+ T LL+ G Sbjct: 159 VNLLETRLRNKRLNEIKNKLEKRNDEL-NKFAGVVSHDLKSPLSNILALTRLLEEENKGK 217 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L Y+EY+ SS L N ++ L D I + I DL+ + K+ K Sbjct: 218 LTKDSKMYLEYLQDSSVELKNYIDATLAYYKNDELITQ-KKEVIPFEDLILKAKKIAVPK 276 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + +++I +G+ ++ +LQI +L+NA+ +S K +T++ ++N DF Sbjct: 277 QN-----VELIYTQNVGNITINKPAVLQILVNLLTNAVKYSDKETTIVNIDFQENDDFYS 331 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+VK+NG IPED +VF+ FV+ N G G+GL+ V+ + G ++++S+ Sbjct: 332 FTVKDNGRGIPEDKLNTVFDLFVTLGNKDNEGNLGTGMGLASVKKLVESQNGSITLNST 390 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 11/245 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T++++ E+ L E E +A+ K+ F+ ++S+ELR+P+ I+G LL+ ++ LN Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILG---LLQIAQNTDLN 564 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Y+ ++ LL L+NDILD + V+AG M++ L +L++E +++ + Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718 ++ I D + ++ + D RL QI + NA+ F+ G V ++ +GD Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHDGDRCV 684 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G + E+ + VF F RR G GLGLSIV+ + L G V + S Sbjct: 685 LRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVKS 744 Query: 777 SDEGV 781 +GV Sbjct: 745 K-QGV 748 >gi|260642402|ref|ZP_05415738.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622214|gb|EEX45085.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 613 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R+++ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS ++ Sbjct: 370 LRSDKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVE--GSTEEERQS 427 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L +V S++ ++ + Sbjct: 428 YFQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDIVLLCRQVVASVSFSRQSSDNQ 487 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + D QR+ Q+ +LSNA F+ KG T+ G +FSV + G Sbjct: 488 FLFTTSFETYRMETDIQRMQQVIINLLSNADKFTKKGKITLDFSVDEKTGMAVFSVTDTG 547 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ K VF RF Q G GLGLSI + ++ G + I G Sbjct: 548 CGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVSKWKGAIWIDPDYTG 598 >gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] Length = 895 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 11/238 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL + +AL+ A K+ F+ +S+ELR+PLT ++GF+ LL SK +NSKQ +Y + Sbjct: 277 RALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVVGFSRLLNQSK---MNSKQVEYSDN 333 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ ++ +LL+ +N++LD + + + + + L + + + A + + + +I Sbjct: 334 ITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHAYQAESTGLDLILI 393 Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727 D + + D R+ QI + +LSNA+ F+ +G V ++K D+G V ++G Sbjct: 394 IDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQGEVVLRVSLMKGENDDGSLSIEVIDSG 453 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + E +F F RR G GLGL I + L GG + I +SD GV T Sbjct: 454 IGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDIVI-NSDLGVGT 510 >gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15] gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15] Length = 661 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 17/231 (7%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616 ++EA A +K F+ ++S+E+R+P+ IIG T+L L+T L+ Q + +E I +S Sbjct: 268 RDEA-ESASRMKGEFLANMSHEIRTPMNAIIGMTELTLETP----LSPSQRENLEIIGSS 322 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 + LL L+NDILD + ++AG + L L + + +A + H + + + ++ Sbjct: 323 AESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALDVVAPQAHGKGLELILDVARD 382 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNG-DFIFSVKNNGS 728 +F+ D RL Q+ +LSNA+ F++KG V LK R D+G +F+V + G Sbjct: 383 LPEAFIGDPTRLRQVLINLLSNAVKFTAKGE-VGLKVERAPSSGTDDGVMLLFTVSDTGI 441 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 IP D +F F R+ G GLGL+I + +++ GG +S+ S+ Sbjct: 442 GIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVSMMGGDISVKSA 492 >gi|299145190|ref|ZP_07038258.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298515681|gb|EFI39562.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 701 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L EKNE L +AD++K F+Q++S+E+R+PL I+GF+ LL L + + Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + ++ + +S +L LVNDILDL+ +++G +N ++ N++ + ++ + E Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576 Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +K+ ++ D QRL Q+ L+NA + KG + + + D I F Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP D SVF RF Q G GLGL+I + G V + S Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687 >gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 869 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863 Query: 788 IPS 790 +P+ Sbjct: 864 LPN 866 >gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 603 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 166/349 (47%), Gaps = 34/349 (9%) Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRY 490 K Q +TI D ++EGV V G GRI+L NPA L+ ++ + G + AA + Sbjct: 255 KAQLKTILDVMNEGVLVIGEKGRIRLVNPALVRLFPQAKD--AEGKFPVEVIPAAEIQQA 312 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSV 549 +E ++++ D+ + + +E D +L I P +L D Sbjct: 313 LDE---------LLSAPQDKPRLITLEVEPRPDMILSVQFIRPREAIHDVLAVAVFHD-- 361 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 ++E +R ++ FV +VS+ELR+PLT I G+ + L+ S S +++ Sbjct: 362 -----ISEMARLMR----VRKEFVANVSHELRTPLTAIAGYAETLRDSA-AEDPSICAKF 411 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ + +V D+L L+ +++G + + T+ +L++V + + +N+ + Sbjct: 412 AETILRNAQHMGTMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLTL 471 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNG--DFIFSVK 724 + D L + AD + Q+F ++ NA ++ +GST+ + + NG + +F + Sbjct: 472 ETDIDPAL-TVRADPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNGLPEALFMIC 530 Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++G IP+ VF RF HR GLGL+I + + HGG + Sbjct: 531 DDGPGIPQADIARVFERFYRVEKHRSSPASTGLGLAICKHIVERHGGRI 579 >gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 864 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622 +A+ K+ F+ ++S+ELR+PL I GF++++ G L +++ +Y I +S LL Sbjct: 611 QANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDILSSGQHLLA 670 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD++ ++AG M L + + + +++++ + + + + ++++V +L A Sbjct: 671 LINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHLP-QLPDIQA 729 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK--SVF 739 D + L QI IL+NA+ F+ G T+ + A + V + G I P+DM + F Sbjct: 730 DYRALKQILLNILTNAIKFTPSGGTITVSAVPTDSFMHLYVADTGIGIAPKDMERLARPF 789 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + N + G GLGL++ +S I +H G + + S+ TT++ +P Sbjct: 790 EQ-IENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILP 838 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TFV++TD +AE+ L E + +K++F+ ++S+E+R+P+ IIG + L S Sbjct: 845 TFVDITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 901 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN +Q YV I + LL ++NDILD + ++AG + + VL+ +L V + Sbjct: 902 GLNPRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGY 961 Query: 661 KMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG 717 K + + V +D + V D RL QI +NA+ F+ +G ++ ++ + Sbjct: 962 KAGAKGLELVCDVAADVP-PNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDA 1020 Query: 718 DFI---FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + F V++ G + PE M + +F F RR G GLGL+I +S L GG Sbjct: 1021 QRVRLRFEVRDTGIGLTPEQMGR-LFESFQQADASTTRRYGGTGLGLAICKSLAELMGGE 1079 Query: 772 VSISS 776 V + S Sbjct: 1080 VGVDS 1084 >gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1093 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++T+ E+AL EA A+ K+ F+ +S+E+R+P+ I+G D+L + S Sbjct: 694 LVDITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGT---S 750 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S Q+ V+ I + LL L+NDILDL+ ++AG M + + + +L ++ + Sbjct: 751 LTSDQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPD 810 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716 + +++ G L R+ QI +L NA+ F+ +G V+ A+ D Sbjct: 811 ADRKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDG 870 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +V++ G IP D +F+RF ++A+R Q GVGLGL+I + L GG ++ Sbjct: 871 PRLRLAVRDTGIGIPADKQAVIFDRFTQINASANR-QFGGVGLGLAICKKLAELMGGRIA 929 Query: 774 ISSS 777 + S+ Sbjct: 930 VESA 933 >gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] Length = 1441 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 14/224 (6%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E K F+ +S+ELR+PL IIG +D L G +N + + + I S LLNL+ND Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGK--LGSFV 681 ILD A++ G + + + + L ++++V Q +A + +K+++D + + + Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR------GVKLVNDLRENVPFVL 428 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R++Q+F ++ N+ F+ G+ I A +D+ + +V + G IPED +F Sbjct: 429 GDTGRIIQVFHNLIGNSCKFTHSGNISISAAVKDD-EVEVAVADTGIGIPEDKFDQIFLA 487 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F R+ G GLGL++V+ + HGG +S+ S + TT Sbjct: 488 FEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTT 531 >gi|148979754|ref|ZP_01815691.1| aerobic respiration control sensor protein ArcB [Vibrionales bacterium SWAT-3] gi|145961637|gb|EDK26936.1| aerobic respiration control sensor protein ArcB [Vibrionales bacterium SWAT-3] Length = 783 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 19/251 (7%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E++ KA K +F+ +S+ELR+PL IIG + +L S+L + KQ Q Sbjct: 264 RDITERKEHQESIEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S+ L N+ NDI+D+ D ++L + I D + E++ A + +R Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380 Query: 670 KV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVK 724 + +SD + V D RL Q+ ++SNAM F+ G V+ +A +GDF V+ Sbjct: 381 DLERLSDLPVAVEV-DGTRLRQVLWNLVSNAMKFTKDGGVVMTVSADIDGDFANITMEVE 439 Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IPE + +F + S G G+GL++ + IN+ G + + +S+EG Sbjct: 440 DTGIGIPESELEKIFAMYYQVKSGTDNLHAVGTGIGLAVSKQLINMMDGDIEV-TSEEGF 498 Query: 782 T---TINCRIP 789 T++ R+P Sbjct: 499 GSTFTVSIRVP 509 >gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 862 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 622 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 680 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 681 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 740 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 741 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 798 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 799 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 856 Query: 788 IPS 790 +P+ Sbjct: 857 LPN 859 >gi|284054106|ref|ZP_06384316.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 385 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 21/211 (9%) Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +GF DLLK G+LNS+Q V++I S LL L+NDILDL+ +++G +LN + + Sbjct: 1 LGFADLLKRQNSGTLNSRQLNQVQFIEKSGLHLLQLINDILDLSKIESGKTELNLELVNI 60 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++L +E + + + + + + + SD ++ + D++R+ QI +LSNA+ F+ +G Sbjct: 61 HELCSECLKMVQPRADKKCLALSLESDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGK 120 Query: 708 VILK-----AARDNGDF--------------IFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 V L ++ +GD+ V+++G IP+D +F F + ++ Sbjct: 121 VRLSGHLAYGSQIDGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSS 180 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G GLGL + + LHGG VS+ S Sbjct: 181 LTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 211 >gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1027 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 11/248 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L + A+ K+ F+ ++S+E+R+PL ++G LL+T+ +Q +Y+ Sbjct: 633 EQDLQKATHLAETANRAKSEFLANMSHEIRTPLNGVLGMLQLLETT---DQTDEQKEYLF 689 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +S+ L L++DILD++ ++AG M++ + + +K+ + +R++ Sbjct: 690 GAISSTKRLTRLLSDILDISRIEAGRMEIVEVEFNIKKTRDSIKELFNPEAKGKGLRLEF 749 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKN 725 D L V D RL QI ++ NA+ F+ KG ++++ ++ + + +V++ Sbjct: 750 GRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEKGEIRIDASLLPSSSDSHVRVLVTVRD 809 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IPE+ K +F FV RR G GLGLSIV + L GG +SI S+ TT Sbjct: 810 TGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDSTVGEGTT 869 Query: 784 INCRIPSK 791 + +P K Sbjct: 870 VYLSLPFK 877 >gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1150 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 15/272 (5%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 + + Q +F+++T+ + R L EA A + K++F+ ++S+E+R+P+ I+GF Sbjct: 649 MAHGQFAASFIDITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQ 708 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+ +L +++V+ IS ++ LL+++NDILD++ ++AG ++ N L+ Sbjct: 709 ILERDS--TLGPDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFE 766 Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +++ + + + +G L + AD L QI +L NA F+S+G Sbjct: 767 DLELMFIPRAVSKGLELTFEKNGSLPRAGHADPGMLRQIMVNLLGNACKFTSQGEVTFRI 826 Query: 712 AARDN--------GDFIFS--VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760 +A N G F + V+++G I PE+M + +F+ F G GLGL I Sbjct: 827 SAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDR-IFDPFHQGGRDPGEGGTGLGLHI 885 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + + GG +S+S E + ++P ++ Sbjct: 886 SRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQ 917 >gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] Length = 2379 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 19/237 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K EA R K+ F+ +VS+ELR+PL +IG ++LLK S L N +Q+ Y + I + Sbjct: 1883 KEEAARA----KSLFLANVSHELRTPLNGVIGMSELLKASPL---NGEQTGYADSIRVCA 1935 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+++ND+LD + ++AG M + I LN+ + EV +++A E +K I +L Sbjct: 1936 DTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLEL 1993 Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730 +AD RL QI +LSN+ F+ +GS + G D SV + G I Sbjct: 1994 NPEMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI 2053 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 P++ + +F F + ++ G GLGLSI ++ I N+ G V + S TT+ Sbjct: 2054 PDEQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 2110 >gi|262170675|ref|ZP_06038353.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus MB-451] gi|261891751|gb|EEY37737.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus MB-451] Length = 785 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L S V D RL Q+ ++SNAM F+ +G V+ +A D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE+ + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 441 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 4/250 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F N D V+ E + +A + A + K+ F+ ++S+ELR+PL IIG++++L Sbjct: 187 FKNRIDYVKTEELKILREQA-QNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDD 245 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S + I++S LL L+NDILDL+ ++AG M+L+ L L++++ + Sbjct: 246 GLDTYSDDLSKINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPL 305 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + +N + + + D+ +L QI +LSNA F+ KG TV L + D F Sbjct: 306 VEKNGNKFVIEKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKKG-TVTLAITKSGDDIKF 364 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G + E VF F + G GLGL I + + GG + + S + Sbjct: 365 AVVDTGIGMNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEG 424 Query: 780 GVTTINCRIP 789 TT + IP Sbjct: 425 KGTTFSITIP 434 >gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] Length = 2330 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1849 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1908 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL N +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1909 KGTKL---NREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1965 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711 +++ + + D V D RL QIF +LSN+ F+ KGS TV + Sbjct: 1966 VRALRYTHRDRGLETIEDLDKVPPDLVVFGDPVRLHQIFMNLLSNSYKFTPKGSVTVAAR 2025 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 R+ + +V + G IPE+ +F F S A R G GLGLSI ++ I Sbjct: 2026 VTREGKGRVRLECAVTDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2084 Query: 766 -NLHGGHVSISSSDEGVTTI 784 ++ GG + + S+ TT+ Sbjct: 2085 EDVLGGAIWLDSTPGKGTTV 2104 >gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 673 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 131/249 (52%), Gaps = 30/249 (12%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL + + G N K + I+ Sbjct: 282 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 337 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S+ L++D+LDL+++ G ++L ++ DL +V+++++T+ ++ +D Sbjct: 338 SSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLAEQVREALSTQ--------ELAAD 386 Query: 675 GKLGSF-----------VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 GK + D RL Q+ +LSNA+ F+ + + RD+G + SV Sbjct: 387 GKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSV 446 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +++G I + +F RF Q G+GLGL+IV+ + +HGG V +S G Sbjct: 447 RDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQ 506 Query: 782 -TTINCRIP 789 T R+P Sbjct: 507 GATFTVRLP 515 >gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1823 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1313 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1372 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1373 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1432 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1433 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDGGAVELVIRPAGVDVPNAIREQLLEH 1492 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1493 GALRDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1552 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1553 LLGGEIHAASEPGRGSTFTLYLP 1575 >gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii] Length = 1425 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 14/224 (6%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E K F+ +S+ELR+PL IIG +D L G +N + + + I S LLNL+ND Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGK--LGSFV 681 ILD A++ G + + + + L ++++V Q +A + +K+++D + + + Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR------GVKLVNDLRENVPFVL 428 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R++Q+F ++ N+ F+ G+ I A +D+ + +V + G IPED +F Sbjct: 429 GDTGRIIQVFHNLIGNSCKFTHSGNISISAAVKDD-EVEVAVADTGIGIPEDKFDQIFLA 487 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F R+ G GLGL++V+ + HGG +S+ S + TT Sbjct: 488 FEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTT 531 >gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 825 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 18/244 (7%) Query: 557 EKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E N ALR A E K+ F+ +S+E+R+P+ I+G LL + L+ +Q Y Sbjct: 435 ELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPMNAILGMCHLLLNT---GLSEQQRDY 491 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + ++ LL+++NDILD + +++G + + L ++L+ ++ + E IR+ Sbjct: 492 LCKTRQAARNLLDIINDILDFSKIESGKFDVETAPFPLAEMLDGIRNVAGVRAAEKGIRL 551 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVK 724 V + + G V D R+ Q+ ++SNA+ F+ +G + + R D+ +F V+ Sbjct: 552 SVAASPDMPGELVGDALRVSQVLINLVSNAVKFTERGEVAVSVSPRHRREDSLLALFEVR 611 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G + + +F F RR G GLGL I + + + GG +S+ SS+ G Sbjct: 612 DTGIGMSREEVARIFRPFTQTDTSITRRYGGTGLGLVICKELVEMMGGKISV-SSEPGRG 670 Query: 783 TINC 786 +I C Sbjct: 671 SIFC 674 >gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 869 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863 Query: 788 IPS 790 +P+ Sbjct: 864 LPN 866 >gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483] gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 869 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863 Query: 788 IPS 790 +P+ Sbjct: 864 LPN 866 >gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 577 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 522 SDSVLEYSI---IPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------- 568 SD V + + +PL P + F TD +RA E+ L + + Sbjct: 288 SDGVYRWQLGRALPLRDPQGNILRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAAN 347 Query: 569 --KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 K+ F+ +S+ELR+PL IIG+T +L+ L Q++ +E I + + L+ D Sbjct: 348 RAKDEFLAMLSHELRTPLNPIIGWTQMLRRGNLTP--EMQAKALETIERNGKLQNQLIED 405 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADR 684 +LD++ + G + I L +L+ +++ + + + + AD Sbjct: 406 LLDISRIIRGKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADP 465 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +L+NA+ F+ KG V + A D+ + +V++NG I + +F RF Sbjct: 466 TRLQQVIWNLLTNAIKFTPKGGRVEVDLAGDSANLYVAVRDNGMGIAPEFLPYMFERFRQ 525 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 R R+ G+GLGL IV + LHGG V S EG + Sbjct: 526 ADSRSTRKEGGLGLGLFIVRHIVELHGGMVQAESEGEGKGAV 567 >gi|298241538|ref|ZP_06965345.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554592|gb|EFH88456.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 757 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 123/234 (52%), Gaps = 7/234 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ + K++F+ ++ELR+PLT I T LLK + + + + + T Sbjct: 523 NSARKELERRKDTFISMANHELRTPLTAIKIQTQLLKKRLVRQGLHEAAAALSRVEEPLT 582 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 +L LV D+LD+ + AG ++ ++ + L+ LL +V S +M +I + G + Sbjct: 583 LLERLVGDLLDVTRIQAGRLEYHWEPVDLDALLQDVT-STTQQMDPTHI---IAVRGTIS 638 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + D+ RL Q+F ++SNA+ ++ + ++A+ V+++G IP+++C+ Sbjct: 639 RLLLGDKDRLAQVFLNLISNAIKYAPDALLIDIEASASAETATVVVRDHGIGIPKELCEK 698 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF VSN + G+G+GL IV + HGG +++ S +T + +P Sbjct: 699 IFERFYRVSNPSQLMVPGLGMGLCIVTEIVKQHGGTITVDSEVGKGSTFHVTLP 752 >gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 984 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 10/226 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K F+ +S+E+R+PL+++IG+T++L L +Q I ++ + LL +V Sbjct: 498 ASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDD--AELTQRQHLQASRIRSAGSALLTVV 555 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 +DILD + ++AG + L+ L+ L+ + + I+V D L + V D Sbjct: 556 DDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPALPRALVGD 615 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI--FSVKNNGSSIPEDMCKSVF 739 + RL QI L+NA+ F+ +G V+ KA G + FSV + G I + +F Sbjct: 616 QNRLRQILLNFLNNALKFTRRGRVVLAVEKAGDGAGGWPIRFSVTDTGIGIAPEQQARLF 675 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 RF V + R + G GLGL+I + I L GG + + S+ EG T Sbjct: 676 KRFSQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVRSAPGEGST 721 >gi|217977515|ref|YP_002361662.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217502891|gb|ACK50300.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 518 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 10/260 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE--ALRKADEI---KNSFVQHVSYELRSPLTNIIG 589 +A L+F D + AE ++ N A R+A+E K+ F+ +S+ELR+PL I+G Sbjct: 223 SALEALSFQAEKDDLIAELEQSKANSDLARRRAEEANLAKSHFLATMSHELRTPLNAILG 282 Query: 590 FTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 F++++K G+ + + +Y I AS LL L+N+ILDL+ ++AG ++L + L+ Sbjct: 283 FSEVMKGELFGAHIVASYKEYSNDIHASGHHLLMLINEILDLSRIEAGRLELKEEAVALD 342 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 ++ + +A + + + I + L AD + + Q+ +LSNA+ F+ G V Sbjct: 343 HIVEDCHHLLALRAKKRGVTITEAIEADLPRIRADERAVRQMTLNLLSNAVKFTPPGGRV 402 Query: 709 ILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFI 765 ++ G +V+++G IPE+ V + F A + G GLGL IV+ + Sbjct: 403 RIRIGWTAAGGQYLAVRDSGPGIPEEEIPIVMSSFGRGALARKNAEEGSGLGLPIVKGLV 462 Query: 766 NLHGGHVSISSS-DEGVTTI 784 LH G + S+ EG I Sbjct: 463 ELHEGTFILKSNVGEGAEAI 482 >gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] Length = 754 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 138/251 (54%), Gaps = 11/251 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ ++VR R TEK A ++A+ K+ F+ ++S+ELR+PL I GF++L+K G L Sbjct: 470 DLREAVR--RYETEKLNA-QEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLG 526 Query: 604 SKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 K+ YVEYI AS + LLNL++DILDL+ ++AG + L+ + L+ LL E + + Sbjct: 527 HKK--YVEYIKDIHASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEM 584 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 +M E ++ + ++D + S AD + + Q+ +LSNA F+ +G V + D Sbjct: 585 QMREASLEFRSLTD-HIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVT 643 Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778 + + G + + + + F +++ H + RG GLGL++ +S + G ++++S Sbjct: 644 ILIADTGIGMTPEQLEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEP 703 Query: 779 EGVTTINCRIP 789 T +P Sbjct: 704 RRGTVAAICLP 714 >gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1059 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 10/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT ERAL+ + A+ K++F+ +S+E+R+PL I G +LL+ S +L+ Sbjct: 514 DVTPLKETERALSTAKQEAESANHAKSAFLATMSHEIRTPLNGITGMIELLQRS---ALS 570 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q VE IS S +L++++NDILDL+ ++AG + L + LL + + + + Sbjct: 571 VEQRQQVETISKCSVVLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQAR 630 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 + +++ D KL S + D RL Q+ ++ NA+ F+ +G I + D I Sbjct: 631 NKELDLQLNMDEKLPSTMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVW 690 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G I ++ +FN F R G GLGL+I + + G +S++S Sbjct: 691 VELAVQDQGIGIADEKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTS 750 Query: 777 SDEGVTTINCRIPSK 791 + T +P + Sbjct: 751 IEGKGTHFRVTLPMQ 765 >gi|260170735|ref|ZP_05757147.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315919071|ref|ZP_07915311.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313692946|gb|EFS29781.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 642 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 456 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ ++ + Sbjct: 457 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 516 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ +G T+ + IFSV + G Sbjct: 517 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 576 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTG 627 >gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 1053 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 Q + +VT AE+ L E +A E+K+ F+ ++S+E+R+P+ IIG + L LK Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L KQ YV I +S+T+LL ++NDILD + ++AG + + + L ++L+ V Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 K + + + ++ + D R+ Q+ +++NA+ F+ +G S + Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 R G +F+V + G + E +++F F R+ G GLGLSI + L Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 769 GGHVSISSSDEG 780 G +S++S + Sbjct: 502 EGEISVTSKPDA 513 >gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1765 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 128/246 (52%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +L+ N+T + AL + ++ A++ K+ F+ ++S+E+R+P+ IIG + L + Sbjct: 1006 VVLSMANITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQT 1065 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L ++KQ Y++ I +S LL ++NDILD + ++AG + + L+ LL ++ Sbjct: 1066 EL---DAKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDM 1122 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 + K + + + ++ + D RL Q+ +++NA+ F+ +G ++ L+ Sbjct: 1123 FSVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLER 1182 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV++NG + E+ +F F R+ G GLGL+I + + L GG Sbjct: 1183 VEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGG 1242 Query: 771 HVSISS 776 + + S Sbjct: 1243 EIGVES 1248 >gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] Length = 1177 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 12/258 (4%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 E ++ L ML + D RA+ +L ++A A + K++F+ ++S+E+R+P+ Sbjct: 481 EARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNG 538 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++G +LLK + ++ +Q VE S S+ LL ++N ILD + ++AG +++ + Sbjct: 539 VLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFN 595 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705 L DL+ EV +A + H+ + + L ++ D R+ QI + +L N++ F+ +G Sbjct: 596 LPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERG 655 Query: 706 STVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 + +A D F +++ G I D+ +F F RR G GLGLS Sbjct: 656 EVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLS 715 Query: 760 IVESFINLHGGHVSISSS 777 I + + L GG + + S+ Sbjct: 716 ICRNLVELMGGTIGLESA 733 >gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] Length = 892 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD V AE+ L + +A ++ + FV +S+E+R+PL ++G +LL+ + L+ Sbjct: 340 DITDRVAAEKELIDARDAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRETP---LD 396 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q+ + + + ILL+ VN+ LD+ +DAG + L+ +L+E+ Q A Sbjct: 397 ASQAALLGSMQKAGEILLSHVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQMQAAGAG 456 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI 720 R++ + G+L V D R+ Q+ ++ NA+ F+ G T+ L+A RD G Sbjct: 457 ARGNRLETRAVGRLPDAVEGDAMRIRQVLLNLVGNAIKFTRDG-TITLEAEYHRDQGQLE 515 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + V + G IP+ + +F+ FV+ R G GLGLSI + G + + SD Sbjct: 516 YRVIDTGIGIPQGETERIFDDFVTLDPELSREATGSGLGLSIARRLMRAMRGQIGV-ESD 574 Query: 779 EG 780 G Sbjct: 575 PG 576 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 25/272 (9%) Query: 526 LEYSIIPLPNAQT----MLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 E ++ P+ N +T + FV ++T+ RAE L E AD K++F+ VS+E Sbjct: 255 FESTVRPVQNMETGKVQEVVFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVSHE 314 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL IIG DLL + +L +Q+ Y I S +L +++NDILD + ++AG ++ Sbjct: 315 IRTPLHGIIGMIDLLLDT---ALTEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIE 371 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698 L L ++N+V + + + N+ I D ++ F+ D RL Q+ + NA Sbjct: 372 LEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNA 431 Query: 699 MDFSSKGSTVILKAARDN-----------GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 + F+ KG V L+ A D+ F+ F + + G I +++ +F F Sbjct: 432 VKFTEKGK-VALRIAMDSRAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQAD 490 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I + + L GG + S Sbjct: 491 MSTARRYGGTGLGLAISKRLVELMGGEIGFRS 522 >gi|162449765|ref|YP_001612132.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161160347|emb|CAN91652.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1984 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 176/374 (47%), Gaps = 37/374 (9%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 T+D ++G+ V GR N FR +W E L + A C +S+ Sbjct: 1604 TLDSTADGILVVDDAGRPVRHNRRFREMWGIPEQVL---LSQDDRLALCLDQLADSEQLL 1660 Query: 499 LFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAE- 552 A + S DD R+ S TL V E P + ++ +F +VT V+AE Sbjct: 1661 QEARMTRSVDDPREASGIDTLTFDDGRVFERYSQPQRVSGRIVGRVWSFRDVTTRVQAEQ 1720 Query: 553 ---RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R L ++ A +A+E ++ F+ S+ELR+PLT++ L + S+ Sbjct: 1721 QRDRLLADEQRARARAEEAVRARDEFLSVASHELRTPLTSL-----QLAVHSMEKKLSRG 1775 Query: 607 SQYVEYISASSTI-------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++ +E AS + L+ LV+ +LD++ + AG ++L+ I L ++ EV + Sbjct: 1776 AEGIERARASVDLSQRQTKRLVALVDMLLDVSRIHAGRLELDPIEIDLRAIVGEVTTYLD 1835 Query: 660 TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ + V + G + G + D QRL Q+ + +LSNA+ F G + L A D Sbjct: 1836 DQLARAGCALDVRAAGPVVGRW--DAQRLEQVVTNLLSNAIKFGG-GKPLELTIASDGET 1892 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 SV ++G IP D+ + VF R+ VS+ H G G+GLGL I + + HGG VS+S Sbjct: 1893 ARLSVTDHGIGIPADVREQVFERYRRGVSSRHYG---GLGLGLYITRTIVEAHGGRVSVS 1949 Query: 776 SSDEGVTTINCRIP 789 S +T + +P Sbjct: 1950 SEIGEGSTFSVELP 1963 >gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii str. 'Deep ecotype'] gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii str. 'Deep ecotype'] Length = 784 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 13/247 (5%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +A KA K F+ +S+ELR+PL I+G + +L+ ++L + +Q + Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---SDEQFSW 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I AS+ L N+ NDI+DL +D ++L+ TI L D E+ I + + + Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIRLLAADKQLEL 383 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVK 724 K + L V D RL QI IL NA+ F+ KG + + + + +GD F ++ Sbjct: 384 KTSINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLSVSSTKPDGDKAYVTFVIE 443 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IPE +F + H + G G+GL+I + ++L G + +SS + T Sbjct: 444 DTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMNGEIHVSSKEGKGT 503 Query: 783 TINCRIP 789 +P Sbjct: 504 RFEIVLP 510 >gi|329935905|ref|ZP_08285707.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329304596|gb|EGG48472.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 541 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA E+L+ A+E + +++ELR+PL N+ G+ + L+ + + ++ Sbjct: 305 RAFNRMAESLQSAEERQRRLTGDIAHELRTPLANLRGYLEALRDGVV----DPSPELLDS 360 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK--QSIATKMHENNIRIK 670 + + + +V+D+ DLA +AG + + + + L DLL + + + +R + Sbjct: 361 LHEEAMLQQRIVDDLQDLALAEAGALTYHRAEVGLGDLLETARTAHAAQAEAAGVALRTR 420 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V ++ AD RL Q+ +L NA+ + G TVIL A R + V + G+ I Sbjct: 421 VPHPVRV---HADADRLRQVVGNLLGNALRATPPGGTVILSAERHGARAVLRVADTGTGI 477 Query: 731 PEDMCKSVFNRF-VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSS 777 P + +F+RF ++A RG Q G GLGLSI + HGG V + S+ Sbjct: 478 PAEQLPHLFDRFWRADAARGRQTGGSGLGLSIARQIVADHGGTVEVEST 526 >gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 899 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 12/253 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + L + E LR++ K+ F+ ++S+ELR+PL +I+ +++L + L+ + +Y Sbjct: 485 KVQVELRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDELEY 544 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LLNL+NDILDL+ V+AG M L + + + ++ ++ ++ + + Sbjct: 545 AKVIHDSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQKGLEL 604 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARDNGD--F 719 V L F D +R Q+ + +LSNA+ F+ +GS I A R D Sbjct: 605 SVDVANDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGSVTVKVDRARITPAMRQLSDTWI 664 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP++ VF F R+ G GLGLSI L GG +++SS+ Sbjct: 665 TVSVTDTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWITLSST 724 Query: 778 DEGVTTINCRIPS 790 + +T +PS Sbjct: 725 EGQGSTFTVYLPS 737 >gi|258620901|ref|ZP_05715935.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM573] gi|258586289|gb|EEW11004.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM573] Length = 785 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L S V D RL Q+ ++SNAM F+ +G V+ +A D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE+ + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] Length = 1111 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 7/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++N+ L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ I Sbjct: 429 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 488 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVI 672 S L NLV+D+LD + G M + S + L V + + + IRI +V Sbjct: 489 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVP 548 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 +D K+ S AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP Sbjct: 549 ADLKVVS--ADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPA 605 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664 >gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2] gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 754 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 10/259 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +T +N+ D E L E L + E+K SF+ ++S+E+R+PL +I+GF ++L Sbjct: 501 KTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILAL 559 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G + ++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ + +L++++ Sbjct: 560 ED-GLSSVEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYM 618 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715 + + +K + + L DR+RL+Q+ + L+NA F+ G + D Sbjct: 619 THQVLIAPRLEFLKEVDNIPL-EINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPD 677 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 G V++ G IP + + +F+RF Q G GLGLSI + I GG + + Sbjct: 678 EGRVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIELK 735 Query: 776 S----SDEGVTTINCRIPS 790 S + CR+ S Sbjct: 736 SEVGKGSRFTVVLPCRVVS 754 >gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] Length = 591 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/355 (23%), Positives = 177/355 (49%), Gaps = 35/355 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV +G + + NP F +W+ E+ + I S +L Sbjct: 264 MADGVVTLNQEGEVVVINPPAEHFLQVWQEEK-------EVELIKKLPSELV------EL 310 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ S ++++ ++ L+ + VL + PL N QT + +V R +TE+ Sbjct: 311 FHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE- 358 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ ++++ F+ +VS+ELR+P+ + G+++ + + + +++V+ I S Sbjct: 359 ---RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESVR 414 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVN++LDLA +++G ++L+ + ++ + ++ + + +++ V + Sbjct: 415 LGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIEQ 474 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D R+ Q+ + ++ NA+ ++ G V L N F V+++G+ IPE+ +F Sbjct: 475 YTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFLF 534 Query: 740 NRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RF RG++ G GLGL+I ++ + H G +S+SS TT + +P++ Sbjct: 535 DRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLPNR 589 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVT+ R E+ L A A K+ F+ ++S+E+R+P+ +IIGF L++++ L+ Sbjct: 916 NVTERRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSA---DLD 972 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q +Y+ + +S+ LL+++ DILD + ++AG L L+ +L ++ ++ K Sbjct: 973 SAQREYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAE 1032 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GD 718 I + + F+ D RL Q+ + +++NA+ F+ +G ++ +N Sbjct: 1033 SKGIDFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEAS 1092 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V+++G + + +FN F R+ G GLGL+I S + L GG VS+ S Sbjct: 1093 IKFIVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVES 1152 >gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 486 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 175/400 (43%), Gaps = 64/400 (16%) Query: 424 DLETKYNTLVKVQGETID-------HLS-------EGVAVFGPDGRIKLSNPAFRSL--- 466 DL +N + + G ID HLS + V F DGR+ L+NP L Sbjct: 112 DLAKTFNHMTEQLGTLIDDLNHEKEHLSSILRSMGDAVITFDADGRVILTNPPGHMLVSR 171 Query: 467 ---------WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517 W+ EE +P H ++ D F ++ S D +Q Sbjct: 172 WSDLEMDIDWEEEE---APPFH--DVPGPLR---------DTFQRVMHSGRDCTNKVQ-- 215 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 + ++V + PL N V +V R +TE++ K ++++ FV +VS Sbjct: 216 ---VINNVWSVVMAPLQNEGV------VRGAVAVIRNVTEEH----KLEKLRRDFVANVS 262 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +E+R+PL+ + G+++ L + S ++ + V+ I S + LVND LD+A ++AG Sbjct: 263 HEIRTPLSMLQGYSEALLDDIVASPEERK-ELVQVIYDESLRMGRLVNDFLDMARMEAGH 321 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILS 696 ++L+ L +++ V + E N+ + + D L AD R+ Q+ + ++ Sbjct: 322 VELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTPLAVHEADEDRIEQVLTNLMD 381 Query: 697 NAMDFSSKGSTVILK---AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRG 749 NA+ + G ++ + A +N F+ V + G IP + +F RF RG Sbjct: 382 NALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPSEDVPYIFERFYKADKARKRG 441 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+IV++ I H G + + S TT +P Sbjct: 442 ASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLP 481 >gi|168703825|ref|ZP_02736102.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 536 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 18/230 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EALR+AD K+ F+ +++ELR+PL + L++ + + + + + Sbjct: 162 EALREADRRKDEFLATLAHELRNPLAPMRNGVHLMRVGQ--PDGPARERTLAMMERQLGQ 219 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATKMHENNIRIK---VI 672 +++LV+D+LD+A +G + L + L +L ++ I HE + + ++ Sbjct: 220 MVHLVDDLLDVARFSSGKIVLRKERLELAPVLGTAVETSRPLIEVGRHELTVDVPAEPLL 279 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 DG DR RL QIF+ +L+NA ++ KG + L AAR+ + V +NG I Sbjct: 280 LDG-------DRTRLTQIFANLLNNAAKYTPKGGRITLSAAREGEKAVVRVGDNGIGISA 332 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +M VF+ F V +A + G+G+GL++V+ + LHGG ++ S+ EG Sbjct: 333 EMLPQVFDLFTQVGSAVDRAQGGLGIGLTLVKRLVALHGGEIAAHSAGEG 382 >gi|17646113|gb|AAL40901.1|AF145972_1 ethylene receptor [Petunia x hybrida] Length = 738 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ +I + LL+ ++L Sbjct: 313 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHALIALSSLLQETEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV I Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVLNLIK 429 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713 + + + L F + D +R++Q+ ++ NA+ FS +GS + A Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRIMQVLLNVIGNAVKFSKEGSVSVSAVAAKSES 489 Query: 714 -RDNGDFIF-------------SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD F VK+ GS I P+D+ K +FN+F N + G GL Sbjct: 490 LRDPRAPEFFPVQSENHFYLRVQVKDTGSGISPQDIPK-LFNKFAQNQALATKNSGGSGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 549 GLAICKRFVNLMEGHIWIESEGLG 572 >gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 812 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PN + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ I ++T+LL L +DI+DL+ +DAG + + L Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYTPKPVCLY 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + K+ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 666 QFCAMMVQKMRNKVSE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + V++ G I + ++VF+RF+ Q G GLGL + +S I Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782 Query: 768 HGGHVSISS 776 GGH+ + S Sbjct: 783 MGGHIGVIS 791 >gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 512 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L + ++I+ FV +VS+ELR+P+T+I GF++ L G+ N +Q ++ I S Sbjct: 282 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAFNDEQMLLSFLTIIHDESNR 338 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LVND+L+L+ ++ L+ L D+L V + ++ N++ V + Sbjct: 339 IQVLVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQD-AV 397 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL+QIF+ +++NA+ +S + +TV L+ + ++ IF VK+ G I + +F Sbjct: 398 ILGDVNRLMQIFTNLINNAIAYSKEETTVTLRISANDQYGIFEVKDEGIGIEKAEISRIF 457 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A G GLGLSIV+ I H G + + S T+I +P K+ Sbjct: 458 ERFYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLPLKD 512 >gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402] Length = 676 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 33/362 (9%) Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIIT 505 +F PD P F W E RL P I+N Y + + +A I Sbjct: 26 IFSPD-----YVPLF---WSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIK 77 Query: 506 SFDDERKSLQGTLEL---LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 S + + + + + LSD + L++S + +T ++T ER L + Sbjct: 78 S-NPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQKLKERFLIIARQD 136 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 KA+ +++ F+ +VS+E+R+P+ IIG +L+ + +L+ +QS+Y ++ S+ +LL Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEYTRQVNFSAEVLL 193 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+LD + +++G M + + L D + + I+ + H+ + I V K+ F+ Sbjct: 194 TLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDFI 253 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGD---------FIFSVKNNGSS 729 D RL Q+ + NA+ F+ G S + +N D +F V + G Sbjct: 254 YGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGIG 313 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + + +FN F R+ G GLGL+I ++ I + G + I + + + Sbjct: 314 VNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNISRGSVFWFK 373 Query: 788 IP 789 IP Sbjct: 374 IP 375 >gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 589 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 7/219 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GF++ L G++N K + ++ I S Sbjct: 354 LKKLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAMNDKDTLEYFLSIILKESDR 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+LDL+ ++ +LN + +N+LL E+ + K E I + + K Sbjct: 411 LQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELY 470 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD R+ Q+F +++NA+ ++ G V +K + + + V + G + +D +F Sbjct: 471 LFADASRIKQVFINLINNAIAYTPAGGEVKVKVEEVDKEVVIVVSDTGIGMEQDEIPRIF 530 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V A G GLGL+IV+ + H G +S++S Sbjct: 531 ERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTS 569 >gi|220917574|ref|YP_002492878.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955428|gb|ACL65812.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 417 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +V ER E+ L + D +K++F+ ++++EL +PLT + G+ +L++ KLG L +Q Sbjct: 146 AVAGERRAAER---LIEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 202 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + VE + S L +V+++ D A++ AG + +V + ++V + + + Sbjct: 203 RIVEAMLGSVARLSRIVDNLSDFASLQAGRAPIVEQPVVPDQFADDVVAEHRPAIRDARL 262 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + V G G+ +AD ++L Q S I+SNA+ FS G V+++ R+ G F+V + G Sbjct: 263 HVAVSHAGG-GAVLADARKLRQALSNIVSNAVKFSPHGGEVLVEVGREPGRLRFTVYDQG 321 Query: 728 SSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + VF + G GLGL + HGG V + S Sbjct: 322 PGIGAAELEQVFEPLHHAAARAGEEARLPGSGLGLPVARRIAEAHGGRVWVESP 375 >gi|153005523|ref|YP_001379848.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152029096|gb|ABS26864.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 979 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 136/316 (43%), Gaps = 37/316 (11%) Query: 507 FDDERKSLQGT--LELL------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---- 554 FD+ R G LEL ++ E S+ PL A +L + D +RA Sbjct: 198 FDEPRPRPMGAGGLELYGLRKDGTEFPAEISLSPLETADGLLAITAIRDVAERKRAEEDR 257 Query: 555 ----------LTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 L E A K+ + +K F +VS+ELR+PL I+G D L S Sbjct: 258 ARLHAQLQATLEELGAAYDKSQQLERLKTQFFANVSHELRTPLALILGPADELLAS---D 314 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + VE I+ ++ L VND+LD+A ++AG M L S + + L+ V Sbjct: 315 LPPGPRRDVEVIARNARTLAKHVNDLLDVAKLEAGKMALELSDVDVAQLVRLVAAHFDAL 374 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARD 715 + V + L + V D +L ++ +LSNA F+ + V + A Sbjct: 375 AASREMAYSVEAPATLAARV-DPDKLQRVVFNLLSNAFKFTPEAGKVRCTLRVEPEGAGS 433 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 D V ++G +P ++VF RF RR G GLGL+I F+ LHGG ++ Sbjct: 434 APDLAIEVADSGPGVPPAERETVFARFTRGDDDTARRVGGTGLGLAITRDFVELHGGRIA 493 Query: 774 ISSSDEGVTTINCRIP 789 + + EG + +P Sbjct: 494 LGEAPEGGAIFSVHLP 509 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 16/243 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K EA R A +K +F++ VS+ELR+PLT + L L Q + V S ++ Sbjct: 714 KEEAER-ASAVKTNFLRLVSHELRTPLTTLHLQLQRLTRDTEHPLEPHQREIVRRGSFAA 772 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 T L LV +L A + +G + + + L L+ +V + + + +++ + + Sbjct: 773 TRLTGLVEALLHEAQLASGRLSVAVEDVDLGALVAKVVEEHRPLADDKGLALRLRARDHV 832 Query: 678 GSFVADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 +V R L+ I S ++ NA+ F++ G V+ GD + V+++G I + Sbjct: 833 -PWVETEPRFLKLILSNLVGNAVKFTAAG--VVEVGVEGRGDELRVEVRDSGPGIAAEDR 889 Query: 736 KSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF F RG R G+GLGL++V G V +SSS +T +P Sbjct: 890 ARVFEPF----ERGVRVAEQFVPGLGLGLAVVRDLAAAIGATVELSSSSSAGSTFTVTLP 945 Query: 790 SKE 792 ++ Sbjct: 946 RRQ 948 >gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 906 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 18/239 (7%) Query: 553 RALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R +T++N+ LR +A E K++F+ ++S+E+R+PL I+G ++LL + L+ K+ Sbjct: 371 RDITQRNDTLRAKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKN---GLDDKK 427 Query: 607 --SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + +E IS S+ LL++V+DILD + ++AG + L L ++L+ + + K E Sbjct: 428 LLEKNLEGISFSAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKARE 487 Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-- 720 +++ D ++ V D+ RL QI + ++ NA+ F+ +G T+ L+ + D + Sbjct: 488 KGLQLITTIDERIPDIIVGDQYRLNQIITNLIGNAIKFTKQGKITLELQLIEETTDKVTI 547 Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G IP++ +F F V + G GLGLSI INL GG + + S Sbjct: 548 NFIVTDTGIGIPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFVES 606 >gi|318040458|ref|ZP_07972414.1| two-component system sensor histidine kinase [Synechococcus sp. CB0101] Length = 493 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 120/228 (52%), Gaps = 2/228 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +A E + +FV VS+ELR+P+T I G++ L + ++ +Q + +E +++ + + Sbjct: 245 LAEAWEHQRTFVNGVSHELRTPITLISGYSRRL-LRRAAEVSPEQREQLELVASEAESMG 303 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+L++A DAG ++L + +DLL + + + +R+ + Sbjct: 304 RLVNDLLEIARDDAGRLQLQCQPLDPSDLLVSLFERL-QPTSAGRLRLHPADLAQPLEVN 362 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +RL Q + ++ NA+ +S V L + D + + V+++G+ +PE + +F R Sbjct: 363 ADPERLSQCLTNLVENALKYSPAPQPVELVLSLDGAELVLHVRDHGAGVPEAERERIFGR 422 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + + G G+GL++V++ + GG ++ + G R+P Sbjct: 423 FVRGSSSAEISGHGIGLAVVQTLMERMGGRALVADATGGGADFQLRLP 470 >gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 501 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 563 RKADEIKNS-FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +KA + +N+ FV VS+E+++PL++I + +LL + ++ + ++++ I + + L Sbjct: 266 QKAIQKRNAEFVSAVSHEMKTPLSSIRAYVELLADDE-AEDDATREEFLKVIESQTDRLQ 324 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L++++L+LA ++AG++ + LN+LL E + + NI + +S LG Sbjct: 325 RLIDNLLNLARIEAGVVAVQKLPQSLNELLGEAVNLLQPAAQQKNITLSSELSPMYLG-V 383 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +ADR LLQ ++SNA+ ++ G +V +++ D +F V ++G + ED CK VF Sbjct: 384 LADRDTLLQAAINLISNALKYTQPGGSVQVRSRLAASDVVFEVTDSGVGLSEDDCKRVFE 443 Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPS 790 +F R G GLGL +V+ + ++H G V + S +T +PS Sbjct: 444 KFYRVKKDREMASGTGLGLPLVKHIVEDIHNGRVEVESKLGEGSTFRLVLPS 495 >gi|257487150|ref|ZP_05641191.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009229|gb|EGH89285.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1185 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ R E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L V + + + Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E ++ +++ S+ G + D RL Q+ +L NA+ F+ +GS V+ A D+ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRL 847 Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +++++G I PE + ++ AH G G GLGLSI + L G +S+ Sbjct: 848 RIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYG---GSGLGLSITRQLVELMKGDISL 904 Query: 775 SSSDEGVTTINCRIP 789 SS T +N +P Sbjct: 905 HSSPGEGTLVNIDLP 919 >gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] Length = 676 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 33/362 (9%) Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIIT 505 +F PD P F W E RL P I+N Y + + +A I Sbjct: 26 IFSPD-----YVPLF---WSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIK 77 Query: 506 SFDDERKSLQGTLEL---LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 S + + + + + LSD + L++S + +T ++T ER L + Sbjct: 78 S-NPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQKLKERFLIIARQD 136 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 KA+ +++ F+ +VS+E+R+P+ IIG +L+ + +L+ +QS+Y ++ S+ +LL Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEYTRQVNFSAEVLL 193 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+LD + +++G M + + L D + + I+ + H+ + I V K+ F+ Sbjct: 194 TLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDFI 253 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGD---------FIFSVKNNGSS 729 D RL Q+ + NA+ F+ G S + +N D +F V + G Sbjct: 254 YGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGIG 313 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + + +FN F R+ G GLGL+I ++ I + G + I + + + Sbjct: 314 VNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIPRGSVFWFK 373 Query: 788 IP 789 IP Sbjct: 374 IP 375 >gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 2319 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 124/224 (55%), Gaps = 16/224 (7%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K+ FV +VS+ELR+P+T+I G+ +++ G L +Q ++E + ++ L L Sbjct: 2083 QVDRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELTPQQRHFLEIVKNNTERLGVL 2142 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----NIRIKVISDGKLGS 679 VND+LDL+ +++G + LN + + L L EV + ++ + E N ++V + L + Sbjct: 2143 VNDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEV--EENLPT 2200 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D +R+ Q+ + ++ N +++ + V ++ R++G+ V+++G I + + +F Sbjct: 2201 VRGDEERIRQVITNLVVNGYNYTPENGHVWVRIFRNDGEVQVDVQDDGIGISIEDQERIF 2260 Query: 740 NRFVSNAHRGQ------RRGVGLGLSIVESFINLHGGHVSISSS 777 RF +RG+ G GLGL++ ++ + +H G + SS Sbjct: 2261 ERF----YRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSS 2300 >gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1268 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 165/358 (46%), Gaps = 50/358 (13%) Query: 446 GVAVFGPDGRIKLSNPAFRSL--WKTEE------NRLSP------GTHIRNIAATCSRYY 491 + + P+GR+ N + + + EE +R P GT R++ +R Sbjct: 759 AIVMLDPEGRVVSWNSGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQRDLDIVTARGR 818 Query: 492 NESDGWDL------FAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543 E +GW + F A + T+ D+ +L+G +L D Sbjct: 819 FEDEGWRVRKNGSTFWANVVYTAIRDQSGNLRGYAKLTRD-------------------- 858 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T+ R ++ L KA+ K+ F+ +S+ELR+PL I+GF LL+ + Sbjct: 859 -LTERKRLDQELERAKSVAEKANLAKSDFLSSMSHELRTPLNAILGFAQLLEAGSPPPTD 917 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +++ + + I A LL L+N+ILDLA +++G + L+ + L D++ E + I + Sbjct: 918 AQKIRLHQIIKAG-WYLLELINEILDLALIESGKLSLSREPVALIDVIIECQAMIEPQAQ 976 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + +I++ I + ADR R+ Q+ +LSNA+ ++ + TV +K + + S Sbjct: 977 QRDIKLTFIPFDETWFASADRTRVKQVLINLLSNAIKYNREHGTVEVKCIESTPERLRIS 1036 Query: 723 VKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 VK+ G + PE + + FNR + G G+GL + + + L GG + + S+ Sbjct: 1037 VKDTGEGLAPEKLAQLFQPFNRL--GQESSGKEGTGIGLVVTKQLVELMGGAIGVEST 1092 >gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] Length = 1228 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-- 607 R + L E +A+E K+SF+ +S+E+R+P+ IIG ++ + KL + + Sbjct: 828 RIQTELQEACATANRANEAKSSFLARMSHEIRTPMNAIIGMANIAR-KKLHARSPTDELL 886 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 I SS LL L+NDILD++ ++AG ++L+ + L+ L+N V+ I + E NI Sbjct: 887 NCANQIEVSSHHLLGLLNDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEKNI 946 Query: 668 RIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFI--F 721 V +G AD RL Q+ +L NA F+ + ++ + R G+ + F Sbjct: 947 AFNVAVEGIATAHLKADSLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLISF 1006 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V++NG I E+ K++F F + R G GLGLSI +S I GG ++++S+ Sbjct: 1007 LVQDNGVGIAEETLKTLFEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTST 1064 >gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 709 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 11/252 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 LP Q + ++VT + ER L E E +AD K+ F+ ++S+E+R+P+ +I + Sbjct: 64 LPK-QVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSHEIRTPMNAVINLSR 122 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ +L S+Q YV + S LL ++NDILD + ++AG ++L L +L++ Sbjct: 123 LVLQDEL---TSRQRDYVGKVLRSGENLLAIINDILDFSKIEAGKLELESVPFGLRELID 179 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708 +V ++ H+ I +V +++ V D RL QI ++SNA+ F+ +G + Sbjct: 180 DVVVPLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVSNAIKFTEQGEVLLKV 239 Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 +LK D F V ++G I + + F RR G GLGL+I + + Sbjct: 240 QLLKRQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINRRFGGTGLGLAITKQLL 299 Query: 766 NLHGGHVSISSS 777 L G + + S+ Sbjct: 300 GLMGSELEVESA 311 >gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum] Length = 1072 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 11/229 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E+ +A+++K+ F+ ++S+ELR+P I+G T ++ SK L Q E I S Sbjct: 682 QAEESAIQANKLKSQFIANISHELRTPCHGILGMTQIILDSK--ELTPSQRDNAETIKKS 739 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L++L++DILD + +++G M L++S+ L ++ +V + + I + I + Sbjct: 740 TDNLVSLIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGRE 799 Query: 677 L---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSS 729 DR+R+ QI S ++SNA+ F+ G +I + ++GD I FSV++ G Sbjct: 800 YPVPPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIG 859 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP + +F F+ R+ G GLGLSIV+ ++L GG +S S Sbjct: 860 IPHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFES 908 >gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 862 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 622 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEITQFI 680 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 681 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 740 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 741 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 798 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 799 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 856 Query: 788 IPS 790 +P+ Sbjct: 857 LPN 859 >gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae NTUH-K2044] gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 946 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 440 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 497 ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 556 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + D RL Q+ S +LSNA+ F+ G V+ + GD+ Sbjct: 557 LVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCAGDY 614 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + SV++ G IP +F+ F QR +G GLGL+I E I++ G +++ + Sbjct: 615 LQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVET 674 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 675 EPGMGSRFTIRIP 687 >gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 876 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 13/275 (4%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 Y L Q + F + T+ VR+ +AL E + +A+ K+ F+ +S+E+R+PL I Sbjct: 319 YRADDLNTPQLITVFSDRTEEVRSRQALQEAMMSAERANMAKSEFLSRMSHEIRTPLNAI 378 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG T + S + +K + I+ SS LL L+ND+LD++ +++ M L + Sbjct: 379 IGLTTIAAASIRDT--AKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDI 436 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSK 704 +L+N ++ + E I + +G G F+ D RL QI + SNA+ F++ Sbjct: 437 FELVNGFVSTVYAQAKEKGIEFRETMEG-FGEDTVFIGDSLRLNQILLNLSSNAVKFTAP 495 Query: 705 GSTVILKAARD-NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757 G + L+ +R NG+ F + + G + +D + +F F +R G GLG Sbjct: 496 GGCIRLEVSRHRNGNAADVLRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLG 555 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +SI + I L GG + I S TT IP K+ Sbjct: 556 MSITRNLITLMGGQIQIESESGVGTTCIVDIPFKK 590 >gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 639 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 139/256 (54%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 M T +N++D AE NE L++ D +K+ + VS+ELR+PLT+I G+ +L+ Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G++N Q + ++ + L L+ +LDL+ ++ G +++ + L ++ +V Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVI 499 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + E NI++K + + + AD+ R+ Q+ + ++ NA+ FS ++++ A + Sbjct: 500 EYLQPIATEKNIKLK--KEIEEIAIDADKDRITQVLTNLIENAIKFSPANESIMISADLE 557 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + V ++G+ IP+ + VFNRF V ++ + ++ G GLGL++ +S + H G + Sbjct: 558 DEHVHLRVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIW 617 Query: 774 ISSSDEGVTTINCRIP 789 + S +T + +P Sbjct: 618 VESELGKGSTFHIILP 633 >gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] Length = 1053 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 Q + +VT AE+ L E +A E+K+ F+ ++S+E+R+P+ IIG + L LK Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L KQ YV I +S+T+LL ++NDILD + ++AG + + + L ++L+ V Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 K + + + ++ + D R+ Q+ +++NA+ F+ +G S + Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 R G +F+V + G + E +++F F R+ G GLGLSI + L Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 769 GGHVSISSSDEG 780 G +S++S + Sbjct: 502 EGEISVTSKPDA 513 >gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1120 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ V++ ER L E + K F+ +S+E+R+PL +G +LL S+ Sbjct: 506 VIGMVDLAKRKEIERRLRESRARAQAESHEKGMFLATMSHEIRTPLHGALGNLELL--SR 563 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +G L +Q + S LL+L+N +LDL+ ++AG L ++ L+ + ++ Sbjct: 564 MG-LTQEQRSRLLIAQDSFGSLLSLINGVLDLSRIEAGEFLLQEQPQHIDQLVEQASRTF 622 Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A +N +R+ + D L G+++ D R QI + ++ NA+ F+S G+ + + + G Sbjct: 623 AADAQKNGVRLLCLIDPALRGTWICDGYRFTQIVTNLIGNAVKFTSHGAITVSLGSTEIG 682 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 V ++G IPED + +F +V S + R G GLGLS+ + GG ++ + Sbjct: 683 QVRLRVADSGRGIPEDEIEKIFMPYVQGSAGPKSSRAGTGLGLSLCQKIAERMGGSIT-A 741 Query: 776 SSDEGVTTI 784 S+ GV +I Sbjct: 742 ESEVGVGSI 750 >gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS] gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS] Length = 681 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 29/278 (10%) Query: 526 LEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 L+ + IPL N Q + +F ++T+ +AE L + + A+ K+ F+ ++S+EL Sbjct: 291 LDTNKIPLHNVQGQVIGILGSFEDITERKQAEVQLQKALQTAETANHTKSVFLANMSHEL 350 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL ++G+T + + +LN +Q + ++ I + LL L+NDILD++ V+AG ++ Sbjct: 351 RTPLNAVLGYTQIFQQD--DTLNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEF 408 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699 + L+ L + Q + + I L + AD +RL QIF +LSNA+ Sbjct: 409 YPKDMKLSQFLQGIVQLFQMRTQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAI 468 Query: 700 DFSSKGS---TVILKAARDNGD----------------FIFSVKNNGSSIPEDMCKSVFN 740 F+ KGS TV + A+ + F +++ G I +F Sbjct: 469 KFTDKGSVTFTVKTEQAKIKNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFL 528 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F H + G GLGLSI ++ +++ G + + S Sbjct: 529 PFQQADKNHYNKPMGTGLGLSITKNLVDMMDGSIHVES 566 >gi|325957609|ref|YP_004293021.1| Sensor protein [Lactobacillus acidophilus 30SC] gi|325334174|gb|ADZ08082.1| Sensor protein [Lactobacillus acidophilus 30SC] gi|327184254|gb|AEA32701.1| Sensor protein [Lactobacillus amylovorus GRL 1118] Length = 384 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +Y+ + + + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVTSP--EDQQKYINIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + +T+ + KLN + + + +L +V + + I I++ + K + A Sbjct: 206 LANDLFEYSTLKSTNTKLNLARLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + + L A N + V+NNG IP+D K +F R Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGEPIPKDSQKKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI + ++LH G + SD+ T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CQSDKNWTSFIIRLP 374 >gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 802 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 14/235 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +ERA EA +A K+ F+ ++S+E+R+P+ IIG ++LL + +L+ +Q +Y Sbjct: 137 SERA----QEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSET---ALDPEQQEYT 189 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669 E I + +LL+L+NDILD + ++AG + L T L D + ++ + H+ + I Sbjct: 190 EQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHKKGLETI 249 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 I + + D RL QI + +NA+ F+ KG + + D D F V++ Sbjct: 250 VYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRISLDDRSDGKVRLRFQVRD 309 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 G I E+ +++F F R+ G GLGLSI ++ + GG + + S + Sbjct: 310 TGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIGVESRE 364 >gi|258512229|ref|YP_003185663.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478955|gb|ACV59274.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 429 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 25/244 (10%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------- 612 + +R+A + + FV S+ELR+PL I S LG + Q VE Sbjct: 177 QPIRRAFQRQLEFVADASHELRTPLAVI--------QSNLGIVMEHTDQTVEENLEWLNN 228 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L LV D+L LA D+ M + + LNDLL + T I + V Sbjct: 229 AHGEARRLAKLVQDLLTLARSDSERMPVERRPVALNDLLERIHDLYETIAEMRGIELTVR 288 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ++ L + DR RL Q+ ++ NAM F+ G V + A R+ I SV++ G I + Sbjct: 289 AEEPL-VVLGDRDRLHQLLVILIDNAMKFTDAGGKVEIAATRNRNQAILSVRDTGIGIAK 347 Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTIN 785 + + VF+RF + + G+ +G GLGLSI + + HGG +SI+S EG+ TT+ Sbjct: 348 EHLERVFDRFYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIAS--EGIGKGTTVR 405 Query: 786 CRIP 789 +P Sbjct: 406 VELP 409 >gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 11/221 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ ++S+ELR+PL I+G+ +L+ S +++ K Q V I T LL ++ Sbjct: 449 ANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHIIHKCGTHLLGMI 506 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-D 683 NDILDL+ ++AG + L + L L V ++ + + + D L V D Sbjct: 507 NDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVDPGLPEGVELD 566 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKS 737 QRL Q+ +LSNA+ F+ +G TV L+ + D F V + G I Sbjct: 567 EQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDTGVGIAPAHLDQ 625 Query: 738 VFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777 +FN FV R Q G GLGL+I + L G + + S+ Sbjct: 626 LFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSA 666 >gi|18310298|ref|NP_562232.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] gi|18144978|dbj|BAB81022.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] Length = 821 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I +D + D ++ +I +LSNA+ F+ G + + D Sbjct: 659 ESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIR 718 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 779 GSEFSILLPN 788 >gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] Length = 572 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 10/260 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592 +Q +L + ++ + A+ E+ ++A+E + + FV +++ELR+PL ++G + Sbjct: 169 SQLLLVTDLICSALTHQLAINRNVESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ ++L +S Q + V +S S L ++ND+LD + ++AG++ L L+DL N Sbjct: 229 LISDTEL---SSSQREIVNNLSQSGEFLRTIINDLLDFSKINAGMLDLIPKKFALHDLRN 285 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ + E I + ++ F D +R+ Q+F ++ NA+ F+ +G V + Sbjct: 286 TIESIFVNRAIEKQIEFNISVASNVPSHFQGDLERITQLFVNLIGNAIKFTEEGH-VNVD 344 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769 D F+FSV++ G I E K++F F + R G GLGL+I + L Sbjct: 345 IEWDKNQFVFSVEDTGVGIAESAHKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVALMN 404 Query: 770 GHVSISSSDEGVTTINCRIP 789 G + ++S TT IP Sbjct: 405 GVIGVTSVVGSGTTFTISIP 424 >gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] Length = 958 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 120/218 (55%), Gaps = 9/218 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K +F+ +S+E+R+P+ ++G LLK + LNSKQ +V+ I+ S T LL + Sbjct: 465 QASRAKTAFLATMSHEIRTPMNGVLGTARLLKET---GLNSKQGHFVDVINRSGTTLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +ND+LD + ++AG +++ L D++ +V+Q + + E NI I + + + F+ Sbjct: 522 LNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEISTLIESDVSQFLYG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ + ++ NA+ F+ +G V +D G +F V + G I ++ +++F Sbjct: 582 DVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQD-GQVLFEVSDTGIGISQEEQETLF 640 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F ++ + G GLGL+I + + GG + + S Sbjct: 641 DAFTQASGGMSSKGGTGLGLAISKRIVEAMGGFLQLES 678 >gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 788 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 125/255 (49%), Gaps = 22/255 (8%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------------KTSKLGS 601 L E N L + D +K++F+ VS+ELR+PLT+I+GF L+ L + Sbjct: 522 LAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHFSPLAGDNPALAA 581 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + + + + L L+ND+LDL +++G M+ I +L++ QSI Sbjct: 582 RGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVAVLHQAVQSIEGL 641 Query: 662 MHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + IR + ++ + D +L+Q+ + +L NA+ F+ +G V+L+ + + Sbjct: 642 LAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTERGE-VVLEVRAEAEAVL 700 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSI 774 +V++ G IP D +S+F+RF RG +G GLGL+I + +GG + Sbjct: 701 MTVRDQGVGIPADQLESIFDRF-HQVGRGDTIVSPTIKGTGLGLAICRQIVRHYGGRIWA 759 Query: 775 SSSDEGVTTINCRIP 789 S + + R+P Sbjct: 760 ESRLGEGSAFHVRLP 774 >gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 124/237 (52%), Gaps = 6/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A++ K+ +V +S+ELR+PL+ ++G+ LL++ ++ + + + I Sbjct: 658 LQEAKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLESDP--AIPAHRVNGLRVIR 715 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L L++ +LD++ ++AG ++++ + L D L+++ + + E + + Sbjct: 716 RSAQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDMVRLQAREAGLEFRFSRP 775 Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + VA D +RL Q+ +LSNA+ F+ G TV L + + +F++++ G IPE Sbjct: 776 EILPAVVATDEKRLRQVLLNLLSNAIKFTEAG-TVSLDLSYRSQIAVFTIRDTGPGIPEA 834 Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F + R G GLGL+I L GG ++++++ G T R+ Sbjct: 835 DLARIFEPFERGSTPAARSTPGTGLGLTIANLLAQLLGGEITVTAAPGGGTQARLRL 891 >gi|183219921|ref|YP_001837917.1| sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910045|ref|YP_001961600.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774721|gb|ABZ93022.1| Sensor and regulator protein of a two component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778343|gb|ABZ96641.1| Putative sensor protein with PAS domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 504 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 24/331 (7%) Query: 477 GTHIRNIAATCSRYYNESDGWDL--------FAAIITSFDDERKS-----LQGTLELLSD 523 G H RN A + + GWD ++ I F + + L+ ++L Sbjct: 167 GIH-RNGQAINHKEFPHFTGWDCKNKETNLCYSDIKEIFPENKLEEIQTILRQVIDLGVS 225 Query: 524 SVLEYSIIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +EYSI + T D++ R +TE+ +KA+ +KN F+ VS+EL Sbjct: 226 KAVEYSIHDADGEKCFEARFTKTGEVDALAIIRNITER----KKAEALKNEFISLVSHEL 281 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT+I G DLL G ++++ + ++ L+ V D+LD+ +D+G + Sbjct: 282 RTPLTSIKGSIDLLLAGVAGEVSNQTKSLLNICRKNTQRLVRFVTDLLDIEALDSGNINF 341 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + T L ++L + T + ++ + S+ S D RL + ++SNA+ Sbjct: 342 KFRTYQLKEILQTSVDGMRTFAEQYHVLLNFDSNFPQTSVYVDEDRLNHCITNLISNAVK 401 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758 ++ K S V + D +++NG I + +F+RF A + G GLGL Sbjct: 402 YTPKFSEVTISVQTDATKAKIQIRDNGPGIDPNFAPRLFHRFAQGAPPKDKLVGGSGLGL 461 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 SI + F+ G + S D G T +P Sbjct: 462 SITKGFVEAMNGKIYFFSDDSG-TVFTIELP 491 >gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 1128 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 7/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++N+ L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ I Sbjct: 446 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVI 672 S L NLV+D+LD + G M + S + L V + + + IRI +V Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVP 565 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 +D K+ S AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP Sbjct: 566 ADLKVVS--ADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1200 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 19/255 (7%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLG 600 ++++T+ R E L E +A +A+ K +F+ +S+E+R+P+T I+G +L K ++L Sbjct: 690 WIDITERKRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLELEKEQARLR 749 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + ++ V Y SA L+ L+ D LDLA ++AG M L L ++Q Sbjct: 750 GVPFSEALRVAYQSAQE--LIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFEV 807 Query: 661 KMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++++ V S+ G ++ D RL Q+ +LSNA+ F+++G + + + Sbjct: 808 TARNQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFTAQGEVRMTVECQPDESG 867 Query: 720 I----FSVKNNGSSIPEDMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHG 769 + SV + G I + +F FV S+A+ G GLGLSI + L G Sbjct: 868 LECLRISVADTGRGISSEQQAKLFTPFVQADAMTSSAYGG----TGLGLSICRQLVELMG 923 Query: 770 GHVSISSSDEGVTTI 784 G + + S+ GV T+ Sbjct: 924 GRIHL-LSEPGVGTV 937 >gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta coccoides DSM 17374] Length = 627 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 9/236 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L++ ++++ FV +VS+EL++PLT I GF++ L LG + S + + + I+ ++ Sbjct: 372 LKRLEQVRKDFVANVSHELKTPLTAINGFSETL----LGGMISSEDIGLFSKIINRNARQ 427 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + +++D+L LA+++ L L +L+ E + + + + ++ + + D Sbjct: 428 MQGIIDDLLLLASLEDDHAALTMKRCTLEELVKETCEDTSYRANSRSVILTTTVHDENGR 487 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + + L+Q ++ NA+ +S GS V +KA D FSV + GS IPE + Sbjct: 488 GVMVNPSLLVQALVNLVINAITYSEPGSEVRIKAEGDQDTVTFSVMDQGSGIPEKHLTRI 547 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F RF V A + G GLGLSIV+ +++HGG VS+ S + +T IP ++ Sbjct: 548 FERFYRVDKARSRNQGGTGLGLSIVKHVVSMHGGQVSVQSVENLGSTFTITIPREQ 603 >gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 812 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T V E +L K A+ K+ F+ +S+ELR+P+ I+G DLLK + +LN Sbjct: 412 DITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMNGILGVGDLLKNT---TLN 468 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +YV+ S +LN++NDILD + ++AG ++L +L D++ + + Sbjct: 469 EEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEFLLKDVVARLTRLYEPLCA 528 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 + ++ K S + VAD R+LQI +LSNA+ F+S+G + + I Sbjct: 529 DKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSEGGITLSLDVVEQSHRIEL 588 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G I + ++F+ F RR G GLGLSI + G V +SS Sbjct: 589 HIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGLSITRDLVKAMNGTVDLSS 647 >gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 755 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 10/247 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E A+ K+ F+ +S+E+R+P+ I+G TDLLK S Q +Y++ Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLLKDSH---PRDDQKKYIKL 418 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + LL L+NDILD++ V+AG++ L + ++ + + I + Sbjct: 419 LDDAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELACR 478 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNG 727 DGKL V D R+ QI ++ NA+ F+ G + + +N + F +++ G Sbjct: 479 VDGKLPGLVQGDPVRVKQILLNLIGNAVKFTDTGGVYVQAGYKQLTNNNVELKFEIQDTG 538 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP+D ++F F R +G GLGLSI + ++ G +++SSS +T Sbjct: 539 PGIPKDRQHAIFEHFTQADSSITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGSTFT 598 Query: 786 CRIPSKE 792 I KE Sbjct: 599 FTITMKE 605 >gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 957 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EA+ +A +K+ F+ ++S+E+R+PL IIGFT LL S LG +Q + I SS Sbjct: 283 RKEAI-EASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLGP---QQRDQLNTILKSS 338 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 ILL ++NDILD + ++AG + L+ +T+ L +++ +V +A HE N+ + + + Sbjct: 339 EILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDLAGLVYSDV 398 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732 S + D R+ QI + +++N + F+ G V+ D D +V ++G + Sbjct: 399 PSHIMGDPLRIKQIVTNLVNNGIKFTQSGEVVVRVMLEDESDESSLIKITVTDSGVGLSR 458 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +++F+ F RR G GLGL I GG + + S Sbjct: 459 VQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVES 504 >gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1768 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 12/230 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 LT+ + A + K+ F+ ++S+E+R+P+ IIG + L L+TS L+ KQ YVE I Sbjct: 1026 LTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTS----LDKKQQNYVEKI 1081 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672 +S LL ++NDILD + ++AG + + L+ +L ++ + K + + + + Sbjct: 1082 DRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAV 1141 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGS 728 + V D RL Q+ +++NA+ F+ +G + I + R++ + + FSV++NG Sbjct: 1142 APNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGI 1201 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + E+ +F F R+ G GLGL+I + + L GG + + S Sbjct: 1202 GLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVES 1251 >gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] Length = 929 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 135/256 (52%), Gaps = 15/256 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A++ L E E L K+ F+ ++S+ELR+PL +I+ +++L + +L +++++ Sbjct: 486 KAKKELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQHNLTDEEAEF 545 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S LL L+NDILDL+ V+AG + + ++ + ++++ +++ + A + N+ Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNLAF 605 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI-- 720 + +D + F D +R QI +LSNA F+ +GS + + +N I Sbjct: 606 HISKADHVVDVFYTDEKRFQQILKNLLSNAFKFTEQGSVTLDINQLTPQQLTNNMQDISK 665 Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +V + G IP+D + +F F R+ G GLGLSI + F L GG +++ Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725 Query: 775 SSSDEGVTTINCRIPS 790 S++ ++ IPS Sbjct: 726 QSTEGQGSSFTLTIPS 741 >gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 536 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 14/281 (4%) Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-------TEKN 559 FD+E+K + V+ SI N M+ +V+ V E+ L E+ Sbjct: 92 FDNEQKIEKKERIYQYLHVIPISIDDEQNRFCMIQITDVSQQVTREKLLREQMVVAKERE 151 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +KA + K F+ +S+E+R+PL I+G D L + +L ++Q +Y+ + S Sbjct: 152 VEAKKASQAKTDFLASMSHEIRTPLNAILGMADTLTET---NLTNEQMEYLTVLRNSGKA 208 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L N++NDILDL+ +++G +++ + + DLL E K I+I +SD Sbjct: 209 LYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKAKSKGIQISYSVSDDIAE 268 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D R+ QI ++ NAM F+ G + ++D V++ G IP + S Sbjct: 269 QIKGDSTRIQQILINLIGNAMKFTEIGKIYVDASLSQDQKSLCLIVEDTGIGIPNEKLNS 328 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL+I + I + G +S+ S Sbjct: 329 IFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQS 369 >gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15] gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15] Length = 1733 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 20/250 (8%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S L N++Q ++V I +S+ Sbjct: 1107 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSIL---NAEQLEHVNIIKSSTDS 1163 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLNL+NDILDL+ V+AG++KL+ + L L+ EV + + + + D + S Sbjct: 1164 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPS 1223 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF-------IFSVKNNGS 728 V D+ R+ Q+ ++ NA+ F+S G + +++ +G F V + G Sbjct: 1224 MVKGDKFRIRQVLLNVVGNAIKFTSSGEIFVRCKVQSPERSGPLGDNETVVRFEVIDTGR 1283 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT--- 782 E K +F RF + + Q G GLGL+I F+ LHGG + S ++G T Sbjct: 1284 GFTEQEAKFLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGKMDARSVPNKGSTFFF 1343 Query: 783 TINCRIPSKE 792 TI +P++E Sbjct: 1344 TIKFGLPTEE 1353 >gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR] gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina loihiensis L2TR] Length = 866 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 12/231 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 + + E +A++ K F+ ++S+E+R+P+ I+G +L LKT L KQ +Y++ I Sbjct: 194 MEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTE----LTQKQKRYIKVI 249 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +SS LL ++NDILD + +DAG + + L D+L + A + ++ ++ + Sbjct: 250 DSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAYDKDLEFIINL 309 Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGS 728 + + + D RL Q+ ++SNA+ F+ G + +L ++RDN SV + G Sbjct: 310 PANIPTRLIGDPLRLNQVLVNLISNAIKFTEDGEINVAVNLLDSSRDNVLLRISVTDTGI 369 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + E+ ++F F R+ G GLGL+I I L GG + ++S+ Sbjct: 370 GMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTSA 420 >gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2] Length = 633 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 13/227 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + A++ K F+ +S+E+R+PL I G LL + L + KQ QY + +S+TI Sbjct: 250 ERAQAANKAKTDFLAVMSHEIRTPLNGIQGLATLLLDTPL---DDKQKQYASDLRSSATI 306 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N++ND+LDL+ +++G+ +++ + L+ +LN++ + N+ R++ S Sbjct: 307 LANVINDVLDLSKIESGMSEVDVTEFNLDSMLNDLITLLGINASANHTRLEYKSKNLDSV 366 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIP 731 V +D +L QI + SNA+ F+ KG+ + + + + + SVK+ G I Sbjct: 367 MVTSDVTKLRQIVINLASNAIKFTHKGTVTVTASLKKVAGPSVEENRLVISVKDTGIGIE 426 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 D + +F++F + RR G GLGLSI + + GG V + S Sbjct: 427 PDRLEHIFDKFTQSDSSISRRYGGTGLGLSIAKELSQILGGDVKVMS 473 >gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 900 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 21/258 (8%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + R R L E N L KA+ K+ F+ +VS+E+R+PL I+GF + LK G + ++ Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438 Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + +++ + + + L L+++ILD+ ++ G + L+ S L++++ V ++ E Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYV-----CRVMEE 493 Query: 666 NIRIKVIS------DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 N R K +S DG V D RL Q+ ++ NA+ F+ +G + + G+ Sbjct: 494 NARRKGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTEEGGVRVRVGCVEEGEG 553 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V++ G IPE+M + VF FV RR G GLG++I + L GG + + Sbjct: 554 RWIEVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLGMTIARELVRLMGGDIGL 613 Query: 775 SSSDEGVTTINCRIPSKE 792 S T + RIP E Sbjct: 614 ESEVGKGTRVWFRIPCVE 631 >gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] Length = 1053 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 Q + +VT AE+ L E +A E+K+ F+ ++S+E+R+P+ IIG + L LK Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L KQ YV I +S+T+LL ++NDILD + ++AG + + + L ++L+ V Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 K + + + ++ + D R+ Q+ +++NA+ F+ +G S + Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 R G +F+V + G + E +++F F R+ G GLGLSI + L Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 769 GGHVSISSSDEG 780 G +S++S + Sbjct: 502 EGEISVTSKPDA 513 >gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 622 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + + F D RLLQ+ + +++NA+ + +GS + + + F V Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 555 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I ++ K VF+RFV N + G+GLGL+I + + GG + ++S + Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 613 EFSFILPSHE 622 >gi|196231316|ref|ZP_03130175.1| multi-sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196224652|gb|EDY19163.1| multi-sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 895 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 3/226 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L NE L++ D +K+ F+ +S+ELR+PL ++IGFT +L+ G +N +Q + + Sbjct: 639 RDLEAANERLQELDRLKSEFLATMSHELRTPLNSVIGFTGILRQELAGPMNDEQKKQLGM 698 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + +S+ LLNL+ND+LDL+ V++G M+L V+ DL+ E+ Q +A ++ + +R++ Sbjct: 699 VHSSARHLLNLINDLLDLSRVESGKMELFLEDFVVADLVKEIDQCLAPQVQQKKLRLETS 758 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D DR + QI + +NA+ F++ G V LK D F V + G I Sbjct: 759 LDQPTLRIRTDRNKSFQILLNLTNNAVKFTAVGR-VTLKVTSDADQVQFEVADTGIGIKP 817 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F F V + R G GLGL + + + GG++++ S Sbjct: 818 ESLPHLFEAFRQVDGSARRVYEGTGLGLYLSKQLAKMLGGNITVES 863 >gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1118 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TD + E L + E A K F+ +S+E+R+P+ ++G +LL + +N Sbjct: 722 NITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLET---DVN 778 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Y+E + + LL+L+N+ILDL +D G +KL LL+EV I+ Sbjct: 779 AEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLAAE 838 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719 + + I +G + D R+ Q+ +LSNA+ F+ +G ++ ++ A Sbjct: 839 AKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGFIRLSLTVEGAEGAQQL 898 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++V ++G IP+ VF RF RR G GLGL+I + + L G + +SS Sbjct: 899 CYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVILMQGQIQVSS 957 >gi|182413537|ref|YP_001818603.1| histidine kinase [Opitutus terrae PB90-1] gi|177840751|gb|ACB75003.1| histidine kinase [Opitutus terrae PB90-1] Length = 1257 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 5/215 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ H+S+ELR+PL ++G+ +L +++ ++ I S LL L+N++L Sbjct: 808 KSTFLAHMSHELRTPLNGVLGYAQVLARDPAQPPAARER--LQIIIQSGEHLLALINEVL 865 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DLA V+AG M+L +T L L+ V + + L V D Q+L Sbjct: 866 DLARVEAGKMQLRPTTCALPRLVESVADLMRAPCEAAGLGFACAVAAGLPRLVRTDEQKL 925 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ ++ NA+ F+ G+ + A +G F V + G I + ++F F ++A Sbjct: 926 RQVLLNLVGNAVKFARHGAVRLAVAPLPDGRVRFEVSDTGVGIAPERLATLFQPFATSAE 985 Query: 748 RGQRRGVGLGLSIVESFINLHGGH-VSISSSDEGV 781 G RG GLGL++ S + L GG ++ S EG Sbjct: 986 HGA-RGTGLGLALSRSMVELLGGRLLAESRPGEGA 1019 >gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1060 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AER L + EA A++ K+ F+ ++S+ELR+PL I+GF+ +L + + +L + Q Sbjct: 584 QAERELLKAKEAAEAANKAKSIFLANMSHELRTPLNAILGFSQILLSDR--TLAPQHRQT 641 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I+ S LL L+ND+LD+A ++AG M L +T L +L ++++ + + +R+ Sbjct: 642 LEKINRSGEHLLGLINDVLDMAKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRL 701 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKN 725 L V D +L Q+ +L N + F+ +GS V LK A++ F V + Sbjct: 702 VFDLAANLPVAVTTDEMKLRQVLVNLLGNGIKFTKEGS-VCLKVSYRAQEPPRLAFEVSD 760 Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G + K +F FV +++ + G GLGL+I F+ L GG + + S+ Sbjct: 761 TGIGMTPQELKMLFQPFVQTDSSKKVSEGTGLGLAISRQFVQLMGGDIQVRST 813 >gi|307730373|ref|YP_003907597.1| osmosensitive K channel signal transduction histidine kinase [Burkholderia sp. CCGE1003] gi|307584908|gb|ADN58306.1| osmosensitive K channel signal transduction histidine kinase [Burkholderia sp. CCGE1003] Length = 957 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 116/215 (53%), Gaps = 7/215 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++ ++NS + +S++LR+PLT I+GF+ +L S+ + ++++ + VE I + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREQAGDARRDDELVEAIHEEALRMTG 735 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V ++LD+A + AG ++LN +L + + ++ + + +R+++ +D L Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACRRVLAGHPVRVELPADLPLLHL-- 793 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSV 738 D + ++FS + NA ++ G+ + + A R D F+ SV +NG +P M V Sbjct: 794 DAVLMERLFSNLFENAAKYTPPGTPLTIGAQRVDEDGKSFVRVSVDDNGPGLPAGMEARV 853 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +F + G+GLGL+I + + HGG + Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888 >gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 789 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 549 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 607 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 608 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 667 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 668 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 725 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 726 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 783 Query: 788 IPS 790 +P+ Sbjct: 784 LPN 786 >gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] Length = 946 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 440 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 497 ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 556 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + D RL Q+ S +LSNA+ F+ G V+ + GD+ Sbjct: 557 LVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCAGDY 614 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + SV++ G IP +F+ F QR +G GLGL+I E I++ G +++ + Sbjct: 615 LQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVET 674 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 675 EPGMGSRFTIRIP 687 >gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] Length = 1522 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE L EA +A++ K++F+ ++S+ELR+P+ I+G LL+ + L+ Sbjct: 746 DITQQREAEDILKTAREAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 802 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ+ Y A++ LL L+NDILD + +++G M+L ++ +L ++ +++ + Sbjct: 803 RKQADYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLK 862 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720 + + D L FV D RL QI + + NA+ F+ G V+ +K + + Sbjct: 863 VKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVT 922 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +S+F+ F RR G GLGL I + F+ L GG +++ S Sbjct: 923 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLES 982 >gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 629 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 13/243 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + + R E+ L + E + + + K+ F+ ++S+ELR+PL I+G+T +L+ ++ SL+ Sbjct: 140 IVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQILQRTE--SLSE 197 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K + + I + LL L+ND+LDL+ ++A ++L L ++ V + + + Sbjct: 198 KGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTEICRIRAEQ 257 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNG- 717 I + D L + + D +RL Q+ +LSNAM F+ +GS VI + + NG Sbjct: 258 KVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQGSVTFKTQVINQESNANGK 317 Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F V + G+ I + + +F F + + Q G GLGL+I + + L GG + Sbjct: 318 TNYKIRFEVVDTGTGITPEQAEKIFQPFEQVGSQKRQSEGTGLGLAISQKIVLLMGGQIK 377 Query: 774 ISS 776 + S Sbjct: 378 VQS 380 >gi|332991979|gb|AEF02034.1| histidine kinase response regulator hybrid protein [Alteromonas sp. SN2] Length = 539 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 6/252 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603 +++SV A L KN L + + K+ F+ ++S+E+R+PL I F++LL+ +K SL Sbjct: 150 LSESVVAHLELKRKNRELERTSQFKSDFLSYISHEIRTPLNAINTFSNLLEGEAKQLSLP 209 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + + + +IS S LL +VN +LD+ ++AG M++ + D + + Sbjct: 210 TNFTDSLGHISKSGERLLEIVNSVLDMKQIEAGKMRVMPRPVGTADFFTHLFSLTRIRAE 269 Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ VI D S D + Q+ +LSNA+ ++ V ++ G+ + + Sbjct: 270 DGNVIFNSVIDDNVPYSLNFDDTKFGQVALNLLSNAIKYTHANKHVSIRVKYKQGNLLLA 329 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +K+ G I E+ K +F F + NAH Q G GLGL+I + + L GG + +SS Sbjct: 330 IKDEGIGISEEEQKKLFAPFERMENAH--QFDGTGLGLNITKKLVELMGGSIKLSSKLNE 387 Query: 781 VTTINCRIPSKE 792 T ++ IP+++ Sbjct: 388 GTHVSVAIPAEK 399 >gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] Length = 803 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 14/263 (5%) Query: 539 MLTFVNVTD----SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +LTF +V D R AL + +A+ K+ F+ +S+++R+P+ IIG + Sbjct: 390 VLTFRDVDDIRKEEERKRAALLDALNLAEQANNAKSDFLSRMSHDIRTPMNAIIGMASIA 449 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + ++ K + I AS+ LL L+NDILD++ +++G M + L LL E+ Sbjct: 450 EANIRDTV--KTEDCIHKIQASAHFLLALINDILDMSKIESGKMSIIREPFDLCALLREL 507 Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + I + E + V+ + + D RL QI +LSNA+ ++ G + L+ Sbjct: 508 EVIIDAQAREKGQQFSVLMPAHMEAEYYGDSLRLNQILMNLLSNAVKYTPDGGKITLRVN 567 Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D F V++NG + E K ++ F + + ++R G GLGLSI + ++ Sbjct: 568 EDRKKGKKSVMRFEVEDNGIGMSEAFLKHIYEPFRQDERKEEKRQEGTGLGLSITRNLVH 627 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG +SISS T +P Sbjct: 628 LMGGSISISSELGKGTCFTVELP 650 >gi|284050736|ref|ZP_06380946.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 478 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 13/212 (6%) Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATV 633 ++S+E+R+P+ I+GF DLLK G + + KQ Y++ I+A L++L++DILDL+ + Sbjct: 2 NMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDAIAAGGRALISLIDDILDLSKI 57 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFS 692 +AG ++L Y + L LL E++Q + +++ + + +A D RL QI Sbjct: 58 EAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINFEPNVPKIIAFDEVRLRQILF 117 Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 I+ NA+ F+ GS I A++ D V + G I D + +F FV + Sbjct: 118 NIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTGIGINPDQHQQIFEAFVQSEG 177 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + RR G GLGL+I +L GG +++ S Sbjct: 178 QSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQ 209 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 10/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 VN E L + A K+ F+ ++S+E+R+PL +IG + LL ++L Sbjct: 539 LVNARHRKSREEELNQARLQAEHATRAKSEFLANMSHEIRTPLNGVIGMSGLLLDTEL-- 596 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +S+Q + E + S+ LLNL+NDILDL+ ++A ++L L + + + + Sbjct: 597 -DSQQRSFAETLKTSAQTLLNLINDILDLSKIEADRLQLETKGFNLETTVKDSAGILNYQ 655 Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 E +++ VI G + D RL Q+ +L NA+ F+S+G + ++ D+ Sbjct: 656 AMEKGLKLGYVIHPGVHHCLLGDEGRLSQVLVNLLGNAIKFTSQGQVDLEVSPVQEEADH 715 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F V + G IPE+ +F F ++ + G GLGL+I +S + + GG + + Sbjct: 716 VRLLFEVHDTGIGIPEEKQDQLFTPFHQLNTSVTRSFGGTGLGLAICKSLVQMMGGEIGV 775 Query: 775 SSS 777 SS Sbjct: 776 KSS 778 >gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 11/221 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ ++S+ELR+PL I+G+ +L+ S +++ K Q V I T LL ++ Sbjct: 449 ANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHIIHKCGTHLLGMI 506 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-D 683 NDILDL+ ++AG + L + L L V ++ + + + D L V D Sbjct: 507 NDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVDPGLPEGVELD 566 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKS 737 QRL Q+ +LSNA+ F+ +G TV L+ + D F V + G I Sbjct: 567 EQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDTGVGIAPAHLDQ 625 Query: 738 VFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777 +FN FV R Q G GLGL+I + L G + + S+ Sbjct: 626 LFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSA 666 >gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521] gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521] Length = 1482 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 134/253 (52%), Gaps = 24/253 (9%) Query: 543 VNVTDSVRAE----RALTEKNEAL------RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +++TD RAE ++ E++ AL ++A IK+ F+ ++S+E+R+P+ +IG ++ Sbjct: 894 MDITDRRRAELKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSE 953 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL ++ L+ +Q + E I S+ LL ++NDILD ++ G M L + LN ++ Sbjct: 954 LLCDTQ---LSQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIM 1010 Query: 653 EVKQSIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708 + ++ + + + + ++ +L G V D RL Q+ + +L+NA+ F++ GS Sbjct: 1011 DTQKMLTFATQKKGLEFR--NECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFTAVGSITL 1068 Query: 709 -ILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 +++ D F V++ G I + K +F F RR G GLGLSI ++ Sbjct: 1069 RVIETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKN 1128 Query: 764 FINLHGGHVSISS 776 ++L GG + + S Sbjct: 1129 LVDLMGGTIGLES 1141 >gi|260103046|ref|ZP_05753283.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075] gi|260083136|gb|EEW67256.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075] gi|328464397|gb|EGF35806.1| two-component sensor [Lactobacillus helveticus MTCC 5463] Length = 382 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +YV+ + + + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN +++ + +L +V + + I IK+ + K + A Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA+ + + + L A N + V+NNG IP+ K +F+R Sbjct: 264 DAEKLVRVYNNLISNALKYGIGATQIKLVANLVNKREVELRVENNGEPIPKKSLKKIFDR 323 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI E ++LH G + SD+ T+ R+P Sbjct: 324 FYRVETSRNTKTGGTGLGLSITEGVVDLHHGTIR-CESDKNWTSFIIRLP 372 >gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 818 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%) Query: 553 RALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L E E +R+A E K+ F+ +S+E+R+P+ ++G T+LL + L+ + Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNT---DLSKE 219 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q+++VE + S LL ++N+ILD + ++AG M+L L+ L + A + Sbjct: 220 QARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAKK 279 Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 I + I G G F D RL Q+ +L NA+ F+ +G+ T+ + AR+ +V Sbjct: 280 GIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLAREPALVRVTV 339 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G I + + +F+ F RR G GLGL+I + L GG + +SS Sbjct: 340 EDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSS 394 >gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 539 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 29/374 (7%) Query: 425 LETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG---- 477 ++ KY + + E +D L G +FGPD I LSN + L G Sbjct: 1 MDEKYLSDQEMAAIVREAVDRLPGGFVIFGPDHEILLSNAQNERDFPFTNEALRQGKTYL 60 Query: 478 --TH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533 TH ++ +A S ++ + E ++ GT V++ IPL Sbjct: 61 EATHFAVKKVAPDLPDEVALSVARNIHDTLAKGEPVELRTHLGT-------VMQVIEIPL 113 Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + +VT ER L + + A+E K++F+ ++S+E+R+PL I+G L Sbjct: 114 SFGGWVAVGADVTALRERERELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQL 173 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + + G L Q +E I S L+ L+ND+LDL+ ++AG ++ L LL Sbjct: 174 MAS---GDLTPGQKDQIETILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRR 230 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 +++ A + E + + + + + + D R+ Q S ++SNA+ F+ +GS + Sbjct: 231 MEKLWAPRASEKGLVLTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFTERGSVRVAAR 290 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + A D + + + G + + +F F RR G GLGLSI Sbjct: 291 CVPAGEGEFDVLVEISDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQ 350 Query: 767 LHGGHVSISSSDEG 780 L GG V ++ S+EG Sbjct: 351 LMGGDV-VAESEEG 363 >gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1917 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 16/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L + K+ F+ ++S+ELR+PL +++ LL + G+L +KQ +Y Sbjct: 1234 QARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDGNLTAKQVEY 1293 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ LL L+NDILDLA +++G M ++ + I L++L ++++ + Sbjct: 1294 SQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQVAQNKGLTF 1353 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718 V +L + V D +RL Q+ +LSNA F+ +G + ++ A+ + Sbjct: 1354 AVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTERGEVRLKIEVAKPGWNSNQQPLNSA 1413 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G I D K +F F R+ G GLGLSI +L GG + Sbjct: 1414 QNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIK 1473 Query: 774 ISS 776 ++S Sbjct: 1474 LTS 1476 >gi|283850550|ref|ZP_06367838.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283574121|gb|EFC22093.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 536 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A+ K+ F+ ++S+E+R+PL I+G LL+T+ + +Q +Y+ Sbjct: 146 LQKAVEEAEAANRAKSDFLANMSHEIRTPLNGILGMLQLLQTT---DADPEQREYITNAI 202 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS L L+ DILDL+ ++AG + + + V ++ + + + D Sbjct: 203 KSSQRLTRLLADILDLSRIEAGRLPIVETAFEFKSQQEAVIETFDQAARGKGLALDFLVD 262 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF--IFSVKNNGS 728 ++ + + D RL QI ++ NA+ FS+ G + RD+G +F+V + G Sbjct: 263 DRMPAALIGDETRLRQILFNLVGNAVKFSAYGRVAVTATPMHLRDDGSLRVLFTVTDTGI 322 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP+ + +F F V A+ + +G GLGL+IV ++L GG + I S++ T I Sbjct: 323 GIPDHLLADIFEPFSQVEGAYSRRFQGAGLGLAIVRRLVSLLGGELDIDSTEGRGTAIYL 382 Query: 787 RIP 789 +P Sbjct: 383 TLP 385 >gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 757 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 15/232 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGF--TDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625 K+ F+ ++S+EL +PLT +IG T L + + SL+ KQ +Y+E I A+ L++L+N Sbjct: 381 KSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKYIESIQANGKKLMDLIN 440 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLG----S 679 DILD +++ +G NY + L V ++ E + I+++ D ++ Sbjct: 441 DILDYSSLTSG----NYQLRIREFSLYSVASAVMGDFQEEAQKKSIELVLDFQVKKEEIK 496 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 F AD R+ QI S +++NA+ F+ +G V L+ R+ F +++ G I +D +F Sbjct: 497 FYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKNQVFFQIEDTGIGITQDQLPLLF 556 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F QR G GLGL++ + + LH G + + S+ + R+P Sbjct: 557 EKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFTVRLP 608 >gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 746 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 19/242 (7%) Query: 549 VRAERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++ ++ TE+ E +K A++ K+ F+ ++S+ELR+PL I+G+ +L+ + +L Sbjct: 271 LQEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTPLNGILGYAQILERN--SNLTP 328 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q+ + I S LL L+ND+LDL+ ++A + L + I + LN V + I TK + Sbjct: 329 LQTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYPTDIDFHTFLNTVVEMIHTKARQ 388 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NG 717 +I + + D L V D +RL QI +L N + F+ +G VI K N Sbjct: 389 KDIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKFTDQGK-VIFKVQVTPLSLTINQ 447 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNA-HRGQRRGVGLGLSIVESFINLHGGHVSI 774 F F + + G I E+ ++VF F V N HR + G GLGL+I + I L GG + + Sbjct: 448 TFRFEIIDTGVGINEEYLETVFKPFEQVGNVQHRSE--GTGLGLAISKQLIELMGGELKV 505 Query: 775 SS 776 S Sbjct: 506 ES 507 >gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] Length = 954 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + EKNE L +A++ K+ F+ +S+E+R+P+ I+G T++ K + K Sbjct: 546 IAEKNEQLLEAVDQANRANQAKSDFLARMSHEIRTPMNAIVGLTEIAKHYEDDP--KKIE 603 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y++ I SS +LLN++NDILD+++++ MK+ L+++L V + + I Sbjct: 604 DYLDKIDVSSKVLLNIINDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGI 663 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIF 721 +V + ++ + D R+ QI ++SNA F+S G + +K + F F Sbjct: 664 VFEVQDEEVTHTYLIGDGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNF 723 Query: 722 SVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G + E+M +F F +A Q+ G GLGLSI ++F+ L G +S+ S Sbjct: 724 LVEDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKG 783 Query: 780 GVTTINCRIP 789 TT IP Sbjct: 784 EGTTFVVSIP 793 >gi|163852923|ref|YP_001640966.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163664528|gb|ABY31895.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 932 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E ++ +A+ K+ F+ +S+E+R+P+ ++ +LL ++ L +Q +Y + I+ Sbjct: 277 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 333 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD A V+AG +++ + D+ + V A + + + D Sbjct: 334 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 393 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730 G + S + D RL Q+ +SNA+ F++ G ++ ++ ++ + +V + G I Sbjct: 394 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGPVLRIAVSDTGIGI 453 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D +F F RR G GLGLSI E I GG V + S +T RI Sbjct: 454 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLGEGSTFWARI 513 Query: 789 P 789 P Sbjct: 514 P 514 >gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1042 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 10/233 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL+E E A + K F+ +S+E+R+P+ +IG LL ++L + Q +YV+ Sbjct: 393 ALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPM---QKRYVDVA 449 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 SAS+ LL+L+NDILD + +++G ++ L +LL+ QS++ K+ E ++ + V I Sbjct: 450 SASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLEERHLPLFVDI 509 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGS 728 + + V D RL QI ++ NA+ F+ +G + + R ++G+ + S V++ G Sbjct: 510 TQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVLLSCEVEDTGI 569 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 I ++ +FN F+ R G GLGLSI + L G + + S E Sbjct: 570 GIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRSQQE 622 >gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1224 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF ++++ RAE L EA A K+ F+ ++S+E+R+P+ +G LLK + Sbjct: 601 VVTFFDISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQT- 659 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +Q +Y+E ++S +LL ++NDILD + +AG M L L+ +L+++ Sbjct: 660 --GLSDQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVA 717 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAA 713 + + E I + +G V D RL Q+ + NA+ F+ KG +L Sbjct: 718 SAILGEKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIALLALE 777 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + FSV + G + + +++F F + RR G GLGL+I + L GG Sbjct: 778 EKDATLRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQ 837 Query: 772 VSISS 776 + + S Sbjct: 838 MWVES 842 >gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 756 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + ER L E A + IK F+ +S+E R+P+ +IG +L+ + L+ Sbjct: 354 DVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQAT---DLS 410 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y + I SS LL L+ND+LDL+ ++A + L L+ + ++ + ++ + Sbjct: 411 EDQRLYTDTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQAD 470 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 E ++ + V D + +V D +RL QI +L NA+ F++ GS I GD + Sbjct: 471 EKHLELSVEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVAL 530 Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP D + +F RF NA + G GLGLSI GG + ++S Sbjct: 531 KIEVEDTGIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIDVTS 589 >gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 639 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E + A+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q +V I+ Sbjct: 230 IEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIIN 286 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +SS L+ +++DILD + ++AG ++L +T L DLL+EV + K + +++ D Sbjct: 287 SSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHTVKAQQKGLQLVCDID 346 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729 +L S V D RL Q+ S +LSNA+ F+ +G ++ + + D I F V ++G Sbjct: 347 AQLPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKLMVSQVNREDDIASVHFRVVDSGIG 406 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ ++VF +F R+ G GLGL+I S + + GG + ++S Sbjct: 407 IAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTS 455 >gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1262 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 7/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K +K+ F+ VS+ELR+PLT++ LL + + + + +E + L+ L Sbjct: 1030 KLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQETIEIATEGVNRLVRL 1089 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILDL + +G ++L + ++ I E I IK S+ + F D Sbjct: 1090 VNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIK--SEYENFFFWCD 1147 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFN 740 RL+QI +L+NA+ FS + S + LK + N +FS+ + G IP D +S+F+ Sbjct: 1148 SDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIFD 1207 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V + + G GLGL+I S + HGG + ++S +T IP Sbjct: 1208 RFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIP 1258 >gi|186474903|ref|YP_001856373.1| histidine kinase [Burkholderia phymatum STM815] gi|184191362|gb|ACC69327.1| histidine kinase [Burkholderia phymatum STM815] Length = 482 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 5/239 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ + LR+AD +K+ F+ ++S+ELR+PL++I ++LL G L+ +Q + V I Sbjct: 220 LDERADELRRADAMKSRFLSNMSHELRTPLSSIRALSNLLLNRLDGDLSGEQERQVLLIR 279 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L +VND+LDLA ++AG + L ++ + + + +++ Sbjct: 280 KSAEDLSEIVNDLLDLAKIEAGRTDVTPVWFKAAGLFAALRAMLTPLLTDPAVKLIFEDT 339 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 L S AD +L QI +SNA+ F+ +G + +G + F+V + G I E+ Sbjct: 340 HGLPSIFADEAKLTQILRNFVSNALKFTERGEIRVGAHLEPDGQHVTFAVVDTGIGIAEE 399 Query: 734 MCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F F V N H QR +G GLGL + L GGH + S +T +P Sbjct: 400 HQQVIFEEFGQVQN-HLQQRVKGTGLGLPLCRKLAALLGGHAGVDSKPGVGSTFYLTLP 457 >gi|83954261|ref|ZP_00962981.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Sulfitobacter sp. NAS-14.1] gi|83841298|gb|EAP80468.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Sulfitobacter sp. NAS-14.1] Length = 515 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 31/279 (11%) Query: 527 EYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVS 577 EY ++ L T +T + R E E LRKA + K+ F+ +S Sbjct: 211 EYKLLALVIAGTATTITLGGLFTYFIENRTRMESIEELRKARDAAEGASRAKSEFMSVLS 270 Query: 578 YELRSPLTNIIGFTDLLK----------------TSKLGSLNSKQSQ-YVEYISASSTIL 620 +ELR+PLT +IG+ L T K ++ Q++ Y + + + L Sbjct: 271 HELRTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHL 330 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L ++NDILD +++ +KL +T LL +V+ ++ + I DG L Sbjct: 331 LTIINDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLH-IPDGSL-DV 388 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +ADR R LQI ++ NA+ FS KG + L+A D G F F V++NG + + +S+F Sbjct: 389 IADRGRCLQILINLVGNALKFS-KGKDIFLRAEVDGGGFRFEVEDNGVGMEQKDLESIFQ 447 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + +A G GLGL+I + HGG +S+SS+ Sbjct: 448 AFTQIESADNRSEGGTGLGLAICKKLALAHGGDISVSST 486 >gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] Length = 945 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 129/250 (51%), Gaps = 11/250 (4%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q ++ N +T+ AE+ L + E A+ K+ F+ ++S+E+R+P+ I GF +L Sbjct: 288 NIQYLICTANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLEL 347 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ + +L+ +Q +++ ++S ILL+++NDILD + ++A + + L + + + Sbjct: 348 LQAT---NLSLEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIED 404 Query: 654 VKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 +A K E N+ + +I+ + D RL Q+ + ++SNA+ F+SKG + Sbjct: 405 AVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVKVD 464 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 LK F VK+ G I ++ ++F F R+ G GLGL+I + Sbjct: 465 CLKEENKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVK 524 Query: 767 LHGGHVSISS 776 + GG + + S Sbjct: 525 MMGGKIQVES 534 >gi|255532428|ref|YP_003092800.1| ATPase [Pedobacter heparinus DSM 2366] gi|255345412|gb|ACU04738.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 543 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 28/268 (10%) Query: 532 PLP-NAQTMLTFVNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHV 576 P P N +L+ ++T A+ AL E E L KA + K+ F+ + Sbjct: 116 PEPENYILVLSIQDITAQKLADFALKEAKEQLELSNAALKKAISIAEKASKTKSDFLSVM 175 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+PL IIG +LLK + Q +Y+ + S+ L+ L+NDILDL ++ Sbjct: 176 SHEIRTPLNGIIGIANLLKLNH----TMDQKEYIGNLIFSADHLMQLINDILDLTKMENE 231 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKIL 695 ++L + I L L+ +K + I++K I D +AD RL Q+ + ++ Sbjct: 232 KLELIVAEIDLFRLIKNIKNQFKSLAEAKGIKLKSFIDDDIPQRLIADPVRLSQMLNNLI 291 Query: 696 SNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF---VSNAHR 748 SNA+ F+ +G + L N F+ F+VK+ G IP ++ +SVF F +AHR Sbjct: 292 SNAIKFTDRGEVTLLIKLLTVESNRAFLHFAVKDTGMGIPPELQESVFESFKQIQQSAHR 351 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776 + G GLGL+I + LH V + S Sbjct: 352 -EHSGTGLGLTITQKLAELHNSRVILKS 378 >gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1055 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 11/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T A L E + A++ K+ F+ ++S+E+R+PL +IGF DLL+ SK LN Sbjct: 409 DITHEKLASEKLKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSK---LN 465 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +Y+ I S+T LL+++ +ILD + ++AG + L + L +L ++ I + H Sbjct: 466 ETQQKYISTIYQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAH 525 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719 + ++ + + D + FV D ++ Q+ +LSNA F+++G + L+ D Sbjct: 526 KKDLEVLLHIDNDIPRFVWIDEVKMRQVLVNLLSNATKFTTEGEIELKIDLQERLDEEMV 585 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F+V++ G I + +F F RR G GLGLSI ++L G + + Sbjct: 586 VLRFAVRDTGIGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVE 645 Query: 776 S 776 S Sbjct: 646 S 646 >gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 622 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 132/250 (52%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + F D RLLQ+ + +++NA+ + +GS + + + F V Sbjct: 496 PGGVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYV 555 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I +D K VF RFV N + G+GLGL+I + + GG + ++S + Sbjct: 556 RDTGIGIDKDKLKDVFGRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 613 EFSFILPSHE 622 >gi|261211774|ref|ZP_05926061.1| signal transduction histidine kinase [Vibrio sp. RC341] gi|260839124|gb|EEX65756.1| signal transduction histidine kinase [Vibrio sp. RC341] Length = 1182 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 10/263 (3%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ + Q LT N +T+ E+AL + NE +A E +N F+ VS+ELR+P+ ++G Sbjct: 620 PINHGQYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 679 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + L S ++Q + + SS L L VNDILD + ++A +KL+ +T L D Sbjct: 680 MEILAS----RLKSSENQLLLTNAISSAERLKLHVNDILDFSKIEAEQLKLDIATYNLAD 735 Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L + + + N + VI L D R QI + +LSNA+ F+ +G V Sbjct: 736 ELGPLLRGFEARAQLNQVEFDVIWLPNPLLVVDFDALRFNQIVTNLLSNAIKFTEQGR-V 794 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 ++K V+++G + + S+F FV RR G GLG+SIV + I Sbjct: 795 VVKVDVTPEQLNLVVEDSGCGMTQQQIDSIFVPFVQADSTITRRFGGTGLGMSIVSNLIE 854 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L G + I+S T ++ IP Sbjct: 855 LMQGRIDITSQFGQGTQVSVSIP 877 >gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 919 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 14/245 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T ++R + K+EA R A+ K+ F+ VS+E+R+P+ ++ ++L + + S+ Sbjct: 262 TVTLRTAEMRSAKDEAER-ANAAKSEFLATVSHEIRTPMNGMLVMAEMLSAAPI---PSR 317 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 ++ E I S LLN++NDILD++ ++AG + L + ++ L+ +V A K E Sbjct: 318 YLRHAEIILRSGRGLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREK 377 Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD--- 718 ++ I + D + + + D R+ Q+ + +++NA+ F+ G I AA D G Sbjct: 378 SLSIATMIDVDVPAEVIGDPVRISQVLTNLVNNALKFTETGGVTIAVECVAAEDAGGPPM 437 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F++++ G IP D +F RF R+ G GLGL+I + + GG V + + Sbjct: 438 LGFTIRDTGIGIPADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRV-T 496 Query: 777 SDEGV 781 S+EGV Sbjct: 497 SEEGV 501 >gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] Length = 541 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K F+ VS+ELR+PL IIGF+D+L G+ + +Q +YV + S LL +V I Sbjct: 284 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSI 343 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ +++G + + ++ + + + NI ++ G ADR+ + Sbjct: 344 LDVSRIESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAV 403 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 Q+ ++SNA+ F+ G V++ A R F V++ G I E+ ++ F + N Sbjct: 404 QQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFTQIQN 463 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + G GLGLS+V+ + LH G +SI S TT+ +P Sbjct: 464 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 507 >gi|65320510|ref|ZP_00393469.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] Length = 448 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E NI I+ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] Length = 841 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 131/257 (50%), Gaps = 14/257 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 FV+VT+ AE A E +A +A +K+ FV ++S+ELR+PL +IIGF S+LG Sbjct: 581 FVDVTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGF------SELGQ 634 Query: 602 LNSKQS----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L S+ + + I A+ +L LVND+LD+A +++ + ++ + L L+ V + Sbjct: 635 LRSRATPKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARE 694 Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715 + +H+ I +++ + D L + AD R Q+ +L+NA+ FS + ++ D Sbjct: 695 LEPLLHQKQIDLRLRLEDAPLIA-KADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDG 753 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G+ + G +P +F FV S+ + G GLGL+I I+ G ++ Sbjct: 754 QGNICVDFLDQGPGVPTQELDKIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTITA 813 Query: 775 SSSDEGVTTINCRIPSK 791 ++ +G +P++ Sbjct: 814 ANRPDGGAVFRITLPTR 830 >gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 648 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V VT V R ++ + R +ADE+K F+ VS+ELR+PL IIGF+D+L Sbjct: 321 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 380 Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 SL+ ++S +Y I+ S LL++VN +LD++ + G + + L+ Sbjct: 381 EGAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 440 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K + I + + VAD + Q+ ++SNA+ F+ +G V + R Sbjct: 441 DLMRLKADASGIALTSAPVPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 500 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 V ++G I E + + F V + G GLGLS+V LHGG VS Sbjct: 501 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 560 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T + +P Sbjct: 561 VESAPGKGTAVTVTLP 576 >gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 783 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD AE AL E A K+ F+ +S+ELR+PL +I+GF LL+ + Sbjct: 380 DITDRRNAEAALRTAREEAENASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDR--GTP 437 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q+Q V +I + LL L+N++LD+A +++G + L+ + L LL EV ++ + Sbjct: 438 AQQAQ-VRHILRAGRHLLGLINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQAD 496 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +IR+++ + V ADRQRL+Q+ +LSNA+ ++ G V ++ D+ S Sbjct: 497 SADIRLRLPEELPAELCVQADRQRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLS 556 Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V +NG I + + +F F A + G GLGL++ +S + G + + S+ Sbjct: 557 VIDNGPGIAAEDLERLFIPFERLGAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEG 616 Query: 782 TTINCRIPSKE 792 +T + +P + Sbjct: 617 STFSLTLPRAQ 627 >gi|326692152|ref|ZP_08229157.1| Signal transduction histidine kinase [Leuconostoc argentinum KCTC 3773] Length = 370 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 10/274 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYEL 580 SD ++++ + P Q + ++VT+++ + T+K E R+++ K+ + ++S++L Sbjct: 94 SDRLIDWQAMYAPKTQAL---IDVTNTIAKQ---TQKIREEERESERSKDEMITNISHDL 147 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT IIG+ L++ + + +++Y+ + S + LV D+ + + A L Sbjct: 148 RTPLTAIIGYLGLVEMNGEQLSEADRAKYIHTAYSKSNQMKVLVEDLFEFSKTQAHDAVL 207 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N +T+ L+DL ++ S + E+N+ + I +L AD +L + ++SNA Sbjct: 208 NLTTLSLSDLFAQLIASYEIEAQEHNVALTQIVKPELIVLEADSDKLARALMNLISNAFK 267 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + + + L A D V N+G IP + +F+RF V ++ Q G GLGL Sbjct: 268 YGDGATFIKLTAQVKGTDVEIRVINDGIKIPSEALTDIFDRFYRVESSRNSQTGGTGLGL 327 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +IV+ I H G V +S DE +TT +P ++ Sbjct: 328 AIVKGIIAQHHGQVRATSDDE-LTTFIVTLPLRQ 360 >gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 663 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 25/250 (10%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D + AE L E E A+E K+ F+ ++S+ELRSPL I+GF+ ++ SK +L S+ Sbjct: 169 DELNAE--LAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSK--TLPSEH 224 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V IS S LL+L+N++LDL+ ++AG LN L LL++++ K + Sbjct: 225 IENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLKADDRR 284 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720 +++ + +V D +L QI +L+NA+ F+ G V ++ D G + Sbjct: 285 LQLIFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQVGG-VSVRVVTDGGSLVTGTAT 343 Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766 F V+++G I + S+F FV + + + G GLGL I F+ Sbjct: 344 KQITDESEKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQTGKEAQEGTGLGLPISRKFVQ 403 Query: 767 LHGGHVSISS 776 L GG +++SS Sbjct: 404 LMGGEIAVSS 413 >gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] Length = 893 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 118/212 (55%), Gaps = 7/212 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+P+ I+G T L + LNS+Q +Y+ + +S+ LL++++DIL Sbjct: 269 KSAFLANMSHEIRTPMNGILGMTQLCLDT---DLNSEQREYLTLVMSSAQSLLHIIDDIL 325 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687 D + ++AG + L+ + L + + + + E I + V D ++ + D RL Sbjct: 326 DFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPQTLRVDVVRL 385 Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ + +LSNA+ F+ +G ++ A G++ F V+++G IP + + +F F Sbjct: 386 RQVLTNLLSNALKFTHQGEILLAVAPGPQPGEWRFRVRDSGIGIPPEKQQVIFEAFSQAD 445 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I + + GG ++++S Sbjct: 446 TSTTRRYGGTGLGLTISARLVAMMGGLLTVAS 477 >gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 1183 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 6/240 (2%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 ++ ++T E AL E + A + K+ F+ +S+E+R+P+ ++ LL+ L Sbjct: 504 VSTADITKRKEQEDALAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL 563 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q + I S+T LL ++NDILD + +++G ++L + L+D++ V + +A Sbjct: 564 AQ---EQKEMARVIRDSATALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLA 620 Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E I + D L F+ D RL QI + + NA+ F+ KG I A +G Sbjct: 621 PRASEKGIGLMTFIDPALPDLFLGDATRLRQIVTNLAGNAVKFTDKGYVRISAEAAADGH 680 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F++ + G + ++ +F F RR G GLGLSI + + G + + S Sbjct: 681 VRFTISDTGIGLNDEQQAKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDS 740 >gi|15131529|emb|CAC48384.1| ethylene receptor [Fragaria x ananassa] Length = 741 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESRRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + EV + Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSVFIEVHNLVK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + + L + + D +RLLQI ++ NA+ FS +GS I ++ Sbjct: 432 PVASVKKLSVTLNLAADLPVYAIGDERRLLQIILNVVGNAVKFSKEGSISITAFVAKSES 491 Query: 713 ARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD DF VK++GS I P+D+ K +F +F N R G GL Sbjct: 492 LRDFRAADFFPVQSDNHFYLRVQVKDSGSGINPQDLPK-LFTKFAQNQSLATRNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 551 GLAICKRFVNLMEGHIWIESDGLG 574 >gi|73538800|ref|YP_299167.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72122137|gb|AAZ64323.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 660 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 25/281 (8%) Query: 526 LEYSIIPLPNAQTMLTFV-NVTDSVRAERA---LTEKNEALRKADE----IKNSFVQHVS 577 LE+SI + + + V N+TD V ER L E+ +A R A E +K+ F+ +S Sbjct: 236 LEWSISAVLQSGVKVAVVSNITDRVNLERQREQLIEREQAARAAMERLNRMKDDFIAILS 295 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAG 636 +ELRSPL I +T +L +NS + + + + + TI L+ D++D++ ++ G Sbjct: 296 HELRSPLNVISIWTHVLNQH----INSDEGRRGLAAVERNITIQRRLIADLVDVSMLNVG 351 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIF 691 +KL + +L+ +S+ + E N+ + V++D D R QI Sbjct: 352 KLKLELERVNPAELVRVAVESMQRQAQERNVTLVTEMPPVLADAAW----LDPSRFEQIL 407 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749 ++SNA+ FS +G V ++ A + G V ++G I + +F+RF +A+R Sbjct: 408 WNLVSNAIKFSPEGGIVRIEVASNGGALRVRVIDHGRGITAEFLPLLFDRFTQSEDANRR 467 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 Q G+GLGL+IV + +HGG V SS+ G+ +T IP Sbjct: 468 QHGGLGLGLAIVRQLVEMHGGTVQASSAGVGLGSTFEVTIP 508 >gi|298241825|ref|ZP_06965632.1| signal transduction histidine kinase with CheB and CheR activity [Ktedonobacter racemifer DSM 44963] gi|297554879|gb|EFH88743.1| signal transduction histidine kinase with CheB and CheR activity [Ktedonobacter racemifer DSM 44963] Length = 1103 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 17/230 (7%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A ++ + K +F+ VS+EL++PLT+ GF LL+ + + + +E + S L Sbjct: 874 ARKELERQKETFLGMVSHELKTPLTSAKGFVQLLQRRLSKAGDEHMAPELEQVDRSLEKL 933 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMH----ENNIRIKVISDG 675 L++ +LD ++ G++ ++ S ++DL+ E VK+ H E+ I+I+ Sbjct: 934 SRLISSLLDANALETGMLSIHASVFAVDDLVREMVKEQKQLWPHRLFLESTIQIRAY--- 990 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 ADR+R Q+ +LSNA+ +S V + + D+ SV+N G IP+D Sbjct: 991 ------ADRERSGQVLQNLLSNALKYSPVADPVWVSVSVDDDMIRLSVQNRGKGIPQDQH 1044 Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +F RFV A Q +G+GLGL I + GG + + S+ +EGVT Sbjct: 1045 ARIFERFVRGAQPEQNTVKGMGLGLYIAAQIVTQQGGRIWVESTLNEGVT 1094 >gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1318 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 11/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+VT +R E E R+A + K++F+ +S+E+R+PL +IIGF++LL+ + S Sbjct: 916 VDVTRQKELQRRTAEALELTRQAYQTKSNFLAMMSHEIRTPLNSIIGFSELLQATSPDS- 974 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Y I+ + LL L+ND+L+++ +A ++++ + N LL E+ Sbjct: 975 -EELHDYAANINTAGQTLLQLINDVLEISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMA 1033 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD 718 + + ++ + +L + RL QI ++ NA+ F+ KG + R +G Sbjct: 1034 RKKGLDFRIEAPAELPEIYLNDARLRQILLNLVGNAVKFTEKGGISVSADFRATDSGHGR 1093 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 +V++ G I + +F+ FV A RG R G GLGLSIV+ ++ GG V+ Sbjct: 1094 LEITVRDTGIGIDPGLHSRIFDPFVQADEGAVRGNRTTNGTGLGLSIVKRLLDKMGGSVT 1153 Query: 774 ISS 776 + S Sbjct: 1154 LES 1156 >gi|259416564|ref|ZP_05740484.1| sensor histidine kinase [Silicibacter sp. TrichCH4B] gi|259348003|gb|EEW59780.1| sensor histidine kinase [Silicibacter sp. TrichCH4B] Length = 896 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 7/247 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L + N+ L + E K++F+ VS+ELR+P+T++ F+++L+ G ++Q +Y Sbjct: 651 RTALQLRDTNQKLTQLSEQKDAFLSQVSHELRTPMTSVRAFSEILRDEP-GLTAAEQHKY 709 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + L L+ND+LDL+ +++G + LN ST L D+L+ S A + ++I Sbjct: 710 ASIIHDEALRLTRLLNDLLDLSVLESGAVSLNVSTRRLGDVLDHALSS-ALAGADGPLQI 768 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 D + D RL Q+F +++NA + + + R NGD + + +NG+ Sbjct: 769 IRDRDREAVEVETDVDRLSQVFINLIANAQKYCTATDPELRIHVRSNGDRVEVDLADNGA 828 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT---TIN 785 IP D + +F +F S + G GLGL+I + + GG +S S EG T+ Sbjct: 829 GIPVDFHEMIFEKF-SRVTPERAGGAGLGLAICKEIMRKLGGDISFLSEQEGAAFRVTLP 887 Query: 786 CRIPSKE 792 R+ +E Sbjct: 888 IRLKIEE 894 >gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] Length = 1131 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 39/248 (15%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE E R+ E FV VS+ELR+PLT+I G D++ + G + KQ +Y++ Sbjct: 413 RDMTEAKELARRQSE----FVSVVSHELRTPLTSITGALDIVLSGYSGRVPDKQQRYLKM 468 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN------- 665 S +L LV+D+LD A D G M ++ +V++DL EV + HE Sbjct: 469 ARESCAVLNALVDDLLDTANADDGDMPVHLRPLVVDDLALEVMD----RYHEEAETKRIE 524 Query: 666 --------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAAR 714 N+RI V D RL Q+ + +LSNA+ F++ V I A Sbjct: 525 IRLEREEENVRI-----------VGDGDRLSQVLTNLLSNAVKFTTVQGQVSIDIFGKAV 573 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + SV N+G IP + VF++F R+ G GLGL I + I HGG + Sbjct: 574 SDAFVCISVYNSGKPIPRAASERVFDKFEQLDDVTTRKVGGTGLGLPISRAIIEAHGGRI 633 Query: 773 SISSSDEG 780 + S G Sbjct: 634 WLESLPTG 641 >gi|227894009|ref|ZP_04011814.1| sensor histidine kinase [Lactobacillus ultunensis DSM 16047] gi|227864210|gb|EEJ71631.1| sensor histidine kinase [Lactobacillus ultunensis DSM 16047] Length = 384 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +Y+ + + + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYINIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN +++ + +L +V + + I I++ + K + A Sbjct: 206 LANDLFEYTTLKSTNTKLNLNSLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + L A N + V+NNG+ IP+D K +F R Sbjct: 266 DAEKLVRVYNNLISNAFKYGIGATKIKLIANLVNKREVELRVENNGAPIPKDSQKKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI +S ++LH G + SD+ T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDKNWTSFIIRLP 374 >gi|119191658|ref|XP_001246435.1| conserved hypothetical protein [Coccidioides immitis RS] Length = 757 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%) Query: 549 VRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+ R LTE+ A + ++K+ F+ ++S+E+R+P+ ++G LL ++ + Sbjct: 357 VKVVRDLTERKAAETRLIAAYEETSKLKSDFLANMSHEIRTPMNGVLGALSLLNST---A 413 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ Q +Y I S+++LL L+NDILD + + +G L + ++N V QS + Sbjct: 414 LSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSLTTDVFSVESIVNSVIQSCPPR 473 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716 E I +K I D S V D R QI ++ NA+ F+ KG T + RD+ Sbjct: 474 NPE--IEVKSIIDPDFPSHVKGDPLRFRQILQNLVGNAVKFTDKGYIHVRTCFKEDERDD 531 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 V ++G + ++ ++F F +A+ +R G GLGLSI +S L GG V Sbjct: 532 YSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQGTGLGLSICKSLAELMGGAV 589 >gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1079 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 19/266 (7%) Query: 520 LLSDSVLEYSIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 L +SVL + P+ N Q ++ FV N+T+ +A + E N A K+ F+ Sbjct: 658 LYDESVL---VSPIKNDQGEISHFVALKENITELKKARKQAEEANRA-------KSEFLS 707 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 +S+ELR+PL I GF+ L+ +S+ LN K VE I + LL L+N++LDLA ++ Sbjct: 708 RMSHELRTPLNAINGFSQLMLSSRKNPLNDKHRSMVEQIDGAGKHLLELINEVLDLARIE 767 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693 AG + L+ + ++NE + + ++ + + V AD R Q+ Sbjct: 768 AGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCGEQTFPLVKADYTRTKQVLVN 827 Query: 694 ILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 +LSNA ++ G T+ ++A G F V +NG I E+ K +F F A + Sbjct: 828 LLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGIAEEKQKQLFVPFARLAQDSEN 887 Query: 752 -RGVGLGLSIVESFINLHGGHVSISS 776 G G+G++I + + GG + S Sbjct: 888 IEGTGIGMTITKQLVEAMGGQIDFES 913 >gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40] Length = 2326 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1843 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1902 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1903 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1959 Query: 655 KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 +++ + + KV D + + D RL QIF +LSN+ F+ KGS TV Sbjct: 1960 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2016 Query: 709 ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762 + R+ I SV + G IPE+ +F F S A R G GLGLSI + Sbjct: 2017 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2075 Query: 763 SFI-NLHGGHVSISSSDEGVTTI 784 + I ++ GG + + S+ TT+ Sbjct: 2076 AIIEDVLGGAIWLDSTPGVGTTV 2098 >gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 964 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 142/283 (50%), Gaps = 14/283 (4%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKA 565 ++R L T + ++ +E ++P+ +L F+ ++++ +E L E Sbjct: 279 NKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELG 338 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +++K+ F+ +S+E+RSPL I+G +LL SKL N +Q + + + LLN +N Sbjct: 339 NKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL---NKEQRIHANITREAGSALLNTIN 395 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 DILD + ++AG M L + + L+ +V Q + K ++ +++ D + + + DR Sbjct: 396 DILDFSKIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDR 455 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740 QRL Q+ ++ NA+ FS G+ + DN + V ++G I E+ +F Sbjct: 456 QRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFK 515 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 F V + H +G GLGL+I I + GG + + S D+G Sbjct: 516 EFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKG 558 >gi|295426128|ref|ZP_06818795.1| sensor histidine kinase [Lactobacillus amylolyticus DSM 11664] gi|295064164|gb|EFG55105.1| sensor histidine kinase [Lactobacillus amylolyticus DSM 11664] Length = 384 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++ K+ + +VS+++R+PLT+IIG+ LLK+ + Q +Y+ + + +L N Sbjct: 151 EQSKDELITNVSHDIRTPLTSIIGYLGLLKSG--NASQEDQQKYINIAFTKAEQMKSLAN 208 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+L+ T+ + KLN ++ + +L +V+ + + I ++ S K + AD + Sbjct: 209 DLLEYTTLKSNNTKLNLVSLPIYSMLEQVEAGFELEAEKKGITFEIASRPKDLTIKADPE 268 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-- 742 +L+++++ +++NA + + + + L A N + V+NNG+ IP+ K +F RF Sbjct: 269 KLVRVYNNLINNAFKYGTGATKIKLIANLINKQTVELRVENNGAKIPKASLKKIFERFYR 328 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + + G GLGLSI +S ++LH G + SD+ T+ R+P Sbjct: 329 VETSRNTKTGGTGLGLSITKSVVDLHRGTIR-CVSDDNWTSFIIRLP 374 >gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 1229 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 129/258 (50%), Gaps = 15/258 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++ + V+ + L + A++ K++F+ +S+E+R+P+ +IG D+L + SL+ Sbjct: 540 DMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLSQT---SLS 596 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q + + I S+ +LL ++ DILD + ++AG +++ I L ++ ++ Sbjct: 597 SYQKEMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMAA 656 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS---SKGSTVILKAA---RDN 716 + + + D L VA D RL QI +++NA+ FS S+ VI+KA R N Sbjct: 657 SKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIVKAVPADRAN 716 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 GD + F V +NG + + + +F F RR G GLGL+I + L G Sbjct: 717 GDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMKGD 776 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S +T RIP Sbjct: 777 ITVESQPGKGSTFKARIP 794 >gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 396 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+ N AL++ D +K+ F+ +S+ELR+PLT++IG+ +L LG+L++ Q + + Sbjct: 154 RELSAANAALQELDTLKSQFLATLSHELRTPLTSLIGYIELFDRGMLGTLSTPQKEAMGV 213 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S TIL +N++L + + + I + DLL + + + IR +V+ Sbjct: 214 MRRSCTILSQQLNNLLYFQELRS--RSFHLRPINMRDLLRQSLILFKERADQAGIRFEVV 271 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ++ +AD + Q+ ++ NA+ F+ G V + + I V++NG IP Sbjct: 272 GS-EIAPILADTSGIEQLVRNLIDNAIKFTQAGGWVRVVFQDEPSRLIMRVEDNGIGIPS 330 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + +F F V ++ + G GLGL+IV+ IN HGG +++ S Sbjct: 331 EYHERIFLPFYRVDSSLASGQTGSGLGLAIVQHVINAHGGQITVRS 376 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 874 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +V++ ++ ERAL E E A+ K+ F+ +S+E+R+P+ I+G LL + L Sbjct: 351 ADVSERLQEERALIEAKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRR---L 407 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q +++ S+ +L L+NDILD + ++AG ++L S +L V + Sbjct: 408 DGQQQEWLATAQESAESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRA 467 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD 718 I +++ L ++V D RL Q+ ++SN + F+ +G V +A R++ Sbjct: 468 TAKGITLELEQGANLPAWVQGDPGRLRQVLMNLVSNGIKFTHQGGVTMRVAQQAKREDSL 527 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP +F F + ++ + G GLGL+I ++L GG + + Sbjct: 528 LLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLAICRHLVDLMGGEIRLE 587 Query: 776 SSDEG 780 S G Sbjct: 588 SPPSG 592 >gi|332687249|ref|YP_004457023.1| sensor histidine kinase [Melissococcus plutonius ATCC 35311] gi|332371258|dbj|BAK22214.1| sensor histidine kinase [Melissococcus plutonius ATCC 35311] Length = 296 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 132/241 (54%), Gaps = 10/241 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISA 615 E E R+ ++ K+ + +VS+++R+PLT+IIG+ L++ S+ + ++ Y+ A Sbjct: 46 EAIEDERQIEKSKDELITNVSHDIRTPLTSIIGYLGLIEESQFHCQEDLLKYTHIAYVKA 105 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 LL V+D+ + V + L+ ++ + ++ ++ + +N I I+V++ Sbjct: 106 KQMKLL--VDDLFEYTKVHQTAVPLHTTSFDMVQMMEKLAVDFGLEAEKNGITIQVMT-- 161 Query: 676 KLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L S + D ++L+++F+ ++SNA+ + G +I+ + + I VKN+GS+IP + Sbjct: 162 TLNSLIMEGDTEKLVRVFNNLISNALKYGKNGKHIIINLDKVGTEAIIVVKNDGSTIPPE 221 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F+RF V + + G GLGL+I + I LHGG++ S++ G T+ +P K Sbjct: 222 ALNQLFDRFYRVEESRSQETGGTGLGLAIAQGIITLHGGYIYAKSAN-GWTSFIIHLPLK 280 Query: 792 E 792 + Sbjct: 281 Q 281 >gi|315501120|ref|YP_004080007.1| gaf sensor hybrid histidine kinase [Micromonospora sp. L5] gi|315407739|gb|ADU05856.1| GAF sensor hybrid histidine kinase [Micromonospora sp. L5] Length = 1454 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L EK + L +A K+ F+ ++S+ELR+PL +++ LL + +L++KQ ++ Sbjct: 1027 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENPERNLSAKQIEFA 1086 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + + LL+L++DILDL+ ++AG M + + I ++ V+Q+ A + E + + Sbjct: 1087 RTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGLDFQ 1146 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719 V +S + V D QRL QI +LSNA+ F+ G+ T+ + A +N F Sbjct: 1147 VRVSQDLPPALVTDAQRLQQILRNLLSNAVKFTDNGAVTLRIGPAAENAVFDVPALTNAQ 1206 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I +D +F F RR G GLGLSI L GG +++ Sbjct: 1207 RVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGTITV 1266 Query: 775 SSSDEGVTTINCRIP 789 SS+ +T +P Sbjct: 1267 SSAPGQGSTFTLFVP 1281 >gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Magnetospirillum gryphiswaldense MSR-1] Length = 1117 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 27/265 (10%) Query: 531 IPLPN---------AQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYEL 580 +P+P A+++ FV D++R E AL++ + +A++ K++F+ ++S+E+ Sbjct: 330 MPIPTEGKDEIADMARSLGYFV---DAIRQREDALSQARDEADQANQAKSAFLANMSHEI 386 Query: 581 RSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 R+P+ IIG + L L+T L+ +Q Y+ I +S LL ++NDILD + ++AG ++ Sbjct: 387 RTPMNAIIGLSGLALRTG----LDPRQRDYLIKIQNASQTLLGIINDILDFSKIEAGRLE 442 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698 + D+L++V I + E + I + G L + D RL Q+ + + +NA Sbjct: 443 FEQIEFSITDVLDDVANLITRRAEEKGLEIVFATTGDLPQKVIGDPLRLAQVITNLCTNA 502 Query: 699 MDFSSKGSTVI---LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F+ G V+ L++ D +FSV++ G + E +F F S A R Sbjct: 503 IKFTHVGEVVVRVELQSISDGKACLLFSVRDTGIGLTEQQAARLFEPF-SQADASTTRQF 561 Query: 753 -GVGLGLSIVESFINLHGGHVSISS 776 G GLGLSI + L G + + S Sbjct: 562 GGTGLGLSICRRMVELMEGRIWVDS 586 >gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 833 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 7/255 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++D R E L + A +A K+ FV ++S+ELR+PL IIG++++L + Sbjct: 301 LADISDRKRMEGELHKAIWASEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSA 360 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + I + LL L+++ILDL+ ++AG M L T L +++ V ++ Sbjct: 361 GRESEMADLRKIQDAGKHLLGLIDNILDLSKIEAGKMTLYLETFELRPMIDSVAATVTPL 420 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GD 718 + + ++G+ +D ++ Q +LSNA F+ G T+ L A RD G+ Sbjct: 421 AKKTGNALVANCADEIGTIHSDLTKVRQTLFNLLSNACKFTRNG-TITLTALRDTNAAGE 479 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775 +I F V++ G + D VF F R G GLGL+I +SF L GG V+++ Sbjct: 480 WIEFQVRDTGIGMTPDQQAKVFEAFTQADDSTTRVYGGTGLGLAITKSFCRLMGGDVTLT 539 Query: 776 SSDEGVTTINCRIPS 790 S T R+P+ Sbjct: 540 SEAGKGTAFVVRLPA 554 >gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 661 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 130/234 (55%), Gaps = 12/234 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + ER K EA ++ K+ F+ H+S+ELR+PLT+I+G+T+LL SK+G S QS+ Sbjct: 131 IEKERVDRLKAEAENRS---KDRFLAHLSHELRTPLTSILGYTELLMDSKVG--QSAQSE 185 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + + +S LL+L+N++LDL+ + A ++LN S + L+ ++ +V + + + Sbjct: 186 -LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEVNLDAMIADVYALMTIPATDKGLT 244 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI-FSVK 724 + V S L D R Q+ ++SNA+ F+ KGS + R+ D++ F+V Sbjct: 245 LTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEKGSVDVSLWSEKRNKTDYLYFTVA 304 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP++ +F F V++ + G GLGL+I ++ GG VS++S Sbjct: 305 DTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGLAICNELVSKMGGDVSLTS 358 >gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 898 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 15/241 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EKN + A + K F +VS+ELR+PLT I LL ++L + Q +E Sbjct: 371 LEEKNREIEAATQAKLMFFTNVSHELRTPLTLIETPVEQLLAENQLSKV---QRGLLEVA 427 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL L+N ILD V+ G M L S L L+ V IR+ Sbjct: 428 HRNVRTLLKLINQILDFRKVEGGKMTLQLSETDLAALIGNVVSEFVAAAEHKRIRLSC-- 485 Query: 674 DGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728 +L V D ++ ++ S ILSNA+ F+ + ++ D G SV N G Sbjct: 486 --RLPEHVTAKIDAGKVERVVSNILSNAVKFTPVAGEINVELVVDTPQGTATLSVTNTGK 543 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 I E +F RF H G G+GL++ ++F+++HGGH+ +SS EG T + Sbjct: 544 GIAEGDLPHIFERFYQPQH--SEGGTGIGLALAKAFVDMHGGHIGVSSKAEGPTVFTVHL 601 Query: 789 P 789 P Sbjct: 602 P 602 >gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 608 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 14/229 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILD 629 FV +VS+ELR+PLT++ + + L G++N + +++ + ++ LVND+L Sbjct: 380 FVANVSHELRTPLTSMKSYLEALAD---GAINDSEVAPRFIHVTQTETERMIRLVNDLLQ 436 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRL 687 L+ +D+ +N I L ++++ + +ATK + + ++ + + F DR +L Sbjct: 437 LSKMDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVF-GDRDKL 495 Query: 688 LQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 Q+ ILSNA+ +S +G T++ LK A+DN I S+K+ G IP++ VF+RF V Sbjct: 496 TQLLDNILSNAVKYSPEGGTILCSLKIAKDN--VIVSIKDEGVGIPKENIPYVFDRFYRV 553 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 A G GLGL+I + ++ HGG + +SS TTI+ +P E Sbjct: 554 DKARSRNLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLPFDE 602 >gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T] gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T] Length = 596 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 18/278 (6%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565 +++ G++ +L ++VL L N +TM + +AE L + +EAL++A Sbjct: 154 ETMSGSMRVLVETVL-VMYDKLAN-RTMAMTREINRRRQAEAELQKAHEALKRAKENAES 211 Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 E K+SF+ +S+E+R+PL I+G + L+ +L + Q + ++ I + LL+++ Sbjct: 212 VSEAKSSFLASMSHEIRTPLAAILGMSHLMHQEEL---PASQRERLDVIENAGRHLLSII 268 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N ILDL+ ++AG L+ + + L ++ E +A + + ++ D G+F+ D Sbjct: 269 NGILDLSKIEAGKFTLDEAALDLRGVVEEAMAMLAHQAEAKGLSLRAEFDLPPGTFLGDA 328 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFN 740 RL Q L NA+ F+ +G + +A D D F V++ G I + +F Sbjct: 329 TRLRQALVNYLINALKFTERGGITVRCSASAVDTDAVDVRFVVEDTGPGIAAAELRRLFK 388 Query: 741 RFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F G+ G GLGL+I L GG S Sbjct: 389 PFTQTEATSTGEHGGTGLGLAITARLAELMGGQAGAES 426 >gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 923 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 14/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVE 611 R L EA + K+ F+ +S+E+R+P+ ++G T+LL LG+ L Q Q+VE Sbjct: 254 RELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELL----LGTELEPTQRQFVE 309 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669 + S LL+++NDILD + ++AG ++L+ L +LL E + + + + Sbjct: 310 AVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVA 369 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKN 725 + D KL D RL QI + +L NA+ F+ G +++ RDNG V + Sbjct: 370 DLPPDEKL-IVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALVVSD 428 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 G IP D + +F F+ R+ G GLGL+I +++ GG + + S+ Sbjct: 429 TGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVEST 482 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 362 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 418 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 419 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 478 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 479 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 538 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 539 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 598 Query: 775 SSSD 778 S + Sbjct: 599 HSEE 602 >gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tabaci] Length = 905 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 268 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 323 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 324 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 383 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 384 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 441 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 442 SSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIEQMGGEIGVDST 490 >gi|332703496|ref|ZP_08423584.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553645|gb|EGJ50689.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 715 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 103/399 (25%), Positives = 177/399 (44%), Gaps = 48/399 (12%) Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459 LHVIVT +LT ++ E +Y L +D++ + + DGR+ L Sbjct: 180 LHVIVT------------DLTAYLEKEVRYRRLHTFLWSFLDNIPCPLHITDLDGRLSLV 227 Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQG 516 NP + SL R R+ +E G ++ F + + K L+ Sbjct: 228 NPDWESLMG------------RRYVDVVGRHVSEIFGEEIARSFLEHMRQVAESGKPLRI 275 Query: 517 TLELLSDSVL---EYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEI 568 +L VL + + P+ N ++ V ++T+ +AE+ L + + AD Sbjct: 276 EDKLYLGGVLRCFDTILFPVLNESGLVEGVGGFSLDITERKKAEQELVQARQKAEVADRA 335 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL I+G +LL S+ ++ +++E AS+ LL LVND+L Sbjct: 336 KSQFLANMSHELRTPLNGIVGMIELLLISR---SEPEERKFLELARASAHDLLGLVNDLL 392 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 +L+T++ + L + ++ V + + + + D L G F+ D RL Sbjct: 393 ELSTLERKRFEPISRPFGLAEAVDSVARFFSVRARLKGLDFTACVDPALSGQFLGDELRL 452 Query: 688 LQIFSKILSNAMDFSSKGSTV--ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFN 740 Q+ +L NA+ F+ GS + A +D D F V + G IP D VF Sbjct: 453 KQVLINLLDNAVKFTESGSVRLEVRLAEKDRQDGAALPVTFLVSDTGIGIPNDKLAEVFE 512 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F + +R G GLGL+I + ++ GG + SS Sbjct: 513 GFNLGENYLTKRYGGAGLGLAIAKHIVSKLGGRIEAESS 551 >gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1150 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 22/246 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L + K+ F+ ++S+ELR+PL +++ LL + G+L KQ Y Sbjct: 743 QARQELEARAQQLSRTSMYKSEFLANMSHELRTPLNSLLILAQLLAQNLEGNLTEKQVDY 802 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I ++ + LL L+NDILDL+ V+AG M ++ + L+ L+ V+ + E + Sbjct: 803 AEVIHSAGSDLLQLINDILDLSKVEAGKMPVHPAAFPLSGLMEHVEATFRPVATERELAF 862 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RDNG 717 + +++ ++ D RL Q+ +LSNA+ F+ +G V L+ A RD+G Sbjct: 863 EAVTEPDAPQWLTTDESRLRQVLRNLLSNALKFTDQGR-VELRVAVAGEEEVPSSLRDSG 921 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + F V + G IP D +S+F F ++ H G G GLGLSI L GG Sbjct: 922 PVVAFRVVDTGIGIPADRLESMFGAFQQGDGTTSRHYG---GTGLGLSISREVARLLGGT 978 Query: 772 VSISSS 777 + S+ Sbjct: 979 IEAQST 984 >gi|153833417|ref|ZP_01986084.1| putative sensor protein RcsC [Vibrio harveyi HY01] gi|148870305|gb|EDL69235.1| putative sensor protein RcsC [Vibrio harveyi HY01] Length = 776 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 129/243 (53%), Gaps = 12/243 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+A E +A +K K++ + +VS+E+R+PL IIG+ +L+ K + S +E Sbjct: 393 EKAAKEALDATKK----KSTLLSNVSHEIRTPLNAIIGYLHMLRVDKC---DGSCSHELE 445 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S +L++VND+LD +D+ KL+ + +N + +++++ ++ +++ + Sbjct: 446 GIRTASNTILDIVNDLLDFERLDSVNYKLHPKHVPINKITRDLEKTFHPLANQKGLKLSI 505 Query: 672 ISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNN 726 + +G GS D R Q S I++NA+ F+ G I + GD +F+V++ Sbjct: 506 VKEGIGGSHQLFVDELRFQQALSNIITNAIKFTDVGKIEISISMDTIGDQRMVVFAVRDT 565 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G I E+ ++FN F ++ G GLGL+I ++ INL GG +++ S + + Sbjct: 566 GRGIREEDLDTIFNSFEQANQEDKQFGFGLGLAITKAIINLMGGVLAVESKIKQGSIFKI 625 Query: 787 RIP 789 +P Sbjct: 626 ALP 628 >gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] Length = 917 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H ++ + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 953 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 30/261 (11%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++V D E++L + A+ + F+ ++S+E+R+P+ I+G D+LK Sbjct: 536 IDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLRDPD 595 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q VE I + LLN++NDILDL+ +D+G M+L + + LL EV+ + + Sbjct: 596 NI---QVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRA 652 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAA 713 E ++ +K+ DG + + D RL QI ++ NA+ F+ G IL +AA Sbjct: 653 SEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDGPGKRAA 712 Query: 714 R-DNGD-------------FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 D D IF + + G I PED S+F FV R G GL Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQA-SLFEPFVQADSTSTRSFGGTGL 771 Query: 757 GLSIVESFINLHGGHVSISSS 777 GL+I + GG VS+ S+ Sbjct: 772 GLAICRRLAHALGGDVSVEST 792 >gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 684 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 16/257 (6%) Query: 546 TDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + VRA+ R T + EA A+ +K+ F+ +S+ELR+PLT+++G++ +L++ KL + Sbjct: 270 AEEVRAQVIREQTARQEA-EAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKKLD--D 326 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+ +E I ++ + L+ DILD++ + G ++LN S + L ++ +++ Sbjct: 327 KATSRALEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEAVRPLAE 386 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718 I++ + D +GS D RL QI +L+NA+ F+ KG V + + G+ Sbjct: 387 PKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYGEEQQTT 446 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 V + G I + VF RF R G+GLGL+IV + LH G + Sbjct: 447 QKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTIF 506 Query: 774 ISSSDEGV-TTINCRIP 789 S G T R+P Sbjct: 507 AQSPGSGQGATFTVRLP 523 >gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1093 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 130/261 (49%), Gaps = 11/261 (4%) Query: 533 LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNI 587 LP Q + + + ER L + +A R+A E IK+ F+ +S+ELRSPL I Sbjct: 676 LPTVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPI 735 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ +LK +L ++++ + I ++ + L+ D+LD++ + G + LN +++ L Sbjct: 736 LGWAQMLKNYELDQPTTQKALCI--IERNARLQAELIEDLLDVSRILRGKLNLNTTSVSL 793 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++ +++ +I ++ + +G + D RL Q+ +LSNA+ F+ G Sbjct: 794 VVVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQ 853 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 V ++ + +G VK+ G I + +F+ F R+ G+GLGL+I + Sbjct: 854 VEIELEQIHGGVEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLV 913 Query: 766 NLHGGHVSISS--SDEGVTTI 784 LHGG + S ++G T I Sbjct: 914 ELHGGKIWAESLGENQGATFI 934 >gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis] Length = 507 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 132/254 (51%), Gaps = 7/254 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + V+++ V+ ER+L A +A++ K+ F+ VS+ELR+PL IIG +LL++ Sbjct: 11 ICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL- 69 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + N + ++ ++ + SS++LL +++DILD + +++ +K++ +++ V + Sbjct: 70 --TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNY 127 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + ++ I + + V D R+ Q+ S +L+N++ F++ G + L RD Sbjct: 128 LPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTGC-ITLHLYRDEY 186 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F + + G I E M +F F VS G GLGL+I E INL G +S+ Sbjct: 187 YLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVV 246 Query: 776 SSDEGVTTINCRIP 789 S + + RIP Sbjct: 247 SQENVGSRFTVRIP 260 >gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] Length = 1235 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + A + K++F+ H+S+E+R+P+ IIG + L+ ++L N +Q ++E + Sbjct: 468 LVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL---NKRQRDFMEKVL 524 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +SS +LLN +ND+LD + ++A + L+Y+ + D+L V A K + + + D Sbjct: 525 SSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVELLLDID 584 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729 K+ ++ D RL QI + SNA+ F+ +G +I L+ FSV + G Sbjct: 585 QKVPFQWIGDPIRLGQILINLASNAVKFTEQGEVIIRVKLLEQHNQQSTLRFSVIDTGIG 644 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ +F F+ R+ G GLGL+I L GG + + S Sbjct: 645 IEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVES 693 >gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] Length = 614 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 173/360 (48%), Gaps = 26/360 (7%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D+L GV + RIK++N A S++ ++N ++ +Y G+ L Sbjct: 257 MDYLVVGVLMIDKKHRIKVANKAAYSIFDLDDNVIN------------HKYEEVLTGYRL 304 Query: 500 FAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 I T + E + + L + +L+ +I+ +P NV+ L Sbjct: 305 LQMIETCYSTKENVNDEVYLYYPKELILDVNILYVPKK------ANVSGISEQVVVLAYD 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +R+ +++++ F+ + S+EL++P+T + GFT+ L L ++ + ++VE ++ + Sbjct: 359 ITEIRRLEKVRSDFIANASHELKTPVTALKGFTETLLDGALEDEDTAR-EFVEIMNREAN 417 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+NDILDLA ++ + T+ LN ++ EV S+ EN + + +D + G Sbjct: 418 RLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVHYDNDLEAG 477 Query: 679 -SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDM 734 F + RL QI + +++NA+ ++ ++G V + + D+ + ++++NG IP++ Sbjct: 478 IRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDED 537 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF V G GLGLSIV + + G + + S +T +P + Sbjct: 538 IPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPKND 597 >gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 676 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 22/241 (9%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +FV+V+ +RA E EA R +K++F+ ++S+E+R+PL I+G T +L+ + Sbjct: 272 SFVDVSSLIRAR---VEAEEASR----MKSAFLANMSHEIRTPLNAILGLTQILRKT--- 321 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L +Q V+ + ++ LL ++ D+LD + ++ G +++ + + + LL E ++ + Sbjct: 322 ALTDEQRDCVDTMRSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEP 381 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E + + + D L V D RL QI +LSNA+ F+ +G V L A+R Sbjct: 382 LAAERGLTLCLERDPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQGR-VTLYASRAREPM 440 Query: 720 I--------FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769 F+V++ G IPE M + +F FV + G G GLGLSI + + L G Sbjct: 441 AYEGPVAVQFAVRDTGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLG 500 Query: 770 G 770 G Sbjct: 501 G 501 >gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 533 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 128/241 (53%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLL---- 338 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + S + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 339 IESDDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K + + + + D D++RL+Q+ + ++NA+ F+++G ++ + ++ Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F+V + G I D VF+RFV N+ +G GLGLSI S I GG + + Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGVE 514 Query: 776 S 776 S Sbjct: 515 S 515 >gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 605 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 363 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 419 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 420 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 478 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + + F D RLLQ+ + +++NA+ + +GS + + + F V Sbjct: 479 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 538 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I ++ K VF+RFV N + G+GLGL+I + + GG + ++S + Sbjct: 539 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 595 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 596 EFSFILPSHE 605 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 591 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 647 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 648 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 707 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 708 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 767 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827 Query: 775 SSSD 778 S + Sbjct: 828 HSEE 831 >gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1035 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 21/273 (7%) Query: 530 IIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 IIPL + +FV +++ ++ + L +A +A K+ F+ +S+E+R+P+ Sbjct: 451 IIPLQESSATDSFVGTWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMN 510 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 IIG T LL + LN +Q ++V I S LL ++NDILD + +++G ++L Sbjct: 511 AIIGLTGLLLDT---PLNPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPF 567 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L + EV +A++ E + + I G + + D RL Q+ ++ NA+ F+ K Sbjct: 568 NLRTCVEEVLDLLASRAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQK 627 Query: 705 GSTVILKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 G+ + A+ ++F++++ G I +F F V + Q Sbjct: 628 GNVTLYVKAKPMPMSQYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQY 687 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G GLGL I + + GG + + S G + + Sbjct: 688 GGTGLGLVICQRLVERMGGQIWVESKKTGESLV 720 >gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 780 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 11/225 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A +A+ K++F+ +S+E+R+PL +IIGF+D+L+ ++L + +Q +E I +S + Sbjct: 393 DAAEEANMAKSAFLATMSHEIRTPLNSIIGFSDMLQETEL---DDEQCSDLEAIRSSGAL 449 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L+NDILDL+ ++AG LN ++ L + + EV + + + ++V L Sbjct: 450 LLELINDILDLSKIEAGKSNLNAVSLDLEETVQEVSSLFKHGLRKKGVELEVEFAEDLPQ 509 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPED 733 FV D+ RL Q+ + +LSNA+ F+SKG + D + + +V + G IPE Sbjct: 510 FVTTDKLRLQQLLNNLLSNAVKFTSKGIIHVRAWYEDRKEPEGPRYYVAVSDTGIGIPEH 569 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + VF F R G GLGL+I + +L GG +S+ S Sbjct: 570 KLEEVFQAFTQADSSTTREYGGTGLGLAICKRITHLMGGEISVVS 614 >gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] Length = 591 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + +V R +TE+ R+ ++++ F+ +VS+ELR+P+ + G+++ + + Sbjct: 345 IRGAVAVLRDMTEE----RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKE 399 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + +++V+ I S L LVN++LDLA +++G ++L+ + ++ + ++ + + Sbjct: 400 EINEFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKD 459 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ V + + D R+ Q+ + ++ NA+ ++ G V L +N F V+ Sbjct: 460 KEVQLTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSGLTFEVQ 519 Query: 725 NNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G+ IPE+ +F+RF RG++ G GLGL+I ++ + H G +S+SS Sbjct: 520 DSGAGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEG 579 Query: 782 TTINCRIPSK 791 TT + +P++ Sbjct: 580 TTFSVYLPNR 589 >gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] Length = 2341 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1858 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1917 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1918 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1974 Query: 655 KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 +++ + + KV D + + D RL QIF +LSN+ F+ KGS TV Sbjct: 1975 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2031 Query: 709 ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762 + R+ I SV + G IPE+ +F F S A R G GLGLSI + Sbjct: 2032 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2090 Query: 763 SFI-NLHGGHVSISSSDEGVTTI 784 + I ++ GG + + S+ TT+ Sbjct: 2091 AIIEDVLGGAIWLDSTPGVGTTV 2113 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 917 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL +I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNSILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H ++ + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|319950785|ref|ZP_08024673.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea P4] gi|319435542|gb|EFV90774.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea P4] Length = 514 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 6/256 (2%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A+ T ++ D A R E+ L + D K++FV VS+ELR+PL +I+G+T++L Sbjct: 252 AEAFNTLLDTRDDYEAGR--EEQLSRLEELDRQKDAFVSTVSHELRTPLASIVGYTEMLC 309 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 G L S Q + V + ++ L L+ D+L L+ ++A + + + + L +++ V Sbjct: 310 DGDGGELTSAQHRLVGVVQRNADRLRGLIEDLLILSRIEAQNLDIAHERLSLGEVVGNVT 369 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 +S+ + + + ++ + + D L + + ++SNA+ F+ G +V + A D Sbjct: 370 ESL--QPAADRAGLALVERVEPAEVIGDALHLERAVTNLVSNAIKFTPGGGSVTVGVAVD 427 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +V + G IPE + + RF ++ QR G GLG+SIV++ + HGG + Sbjct: 428 EHVATVTVADTGIGIPEAEQEHLGTRFFRSSSAQQRSIPGTGLGVSIVQAIADAHGGGLD 487 Query: 774 ISSSDEGVTTINCRIP 789 S + TT IP Sbjct: 488 FDSVEGEGTTFRLTIP 503 >gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 903 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 13/223 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT LLKTS L Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTS----LTPSQTDYMQTIEKSARNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILD + ++AG ++L + L D LNE + H+ + + + D ++ ++ Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYL 400 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMC 735 D RL Q+ + + NA+ F+ G+ I A+ +++ G I E+ Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTEHGNVDVRIEQIGSASGSKVRLNVLIRDTGIGISEEQQ 460 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F F RR G GLGL I + + GG + S Sbjct: 461 RQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 503 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 6/245 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606 +V A + ++ EAL D+ K +F ++S+E R+PLT ++G +LL+ + L KQ Sbjct: 322 NVHAYQEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQDTALQESTYKQ 381 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +E ++ LL LVN++LD + ++AG +K ++ + L L ++ S + + Sbjct: 382 P--IEATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAG 439 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + + V + AD + ++ +LSNA ++ KG + A +G + V + Sbjct: 440 LELSVDCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLKGHIGVQLTAEADG-VVLRVSDT 498 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP +F RF A+ G R G G+GLS+V + LHGG ++++S + +T Sbjct: 499 GVGIPAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTF 558 Query: 785 NCRIP 789 R+P Sbjct: 559 TVRLP 563 Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 28/251 (11%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+++++ F S++L+ PL I F DLLK +L + Y++ + ++ + Sbjct: 904 LQRSNDNLQQFAYVASHDLQEPLRKIQSFGDLLKNQYADNLG-EGIDYLKRMQTAANRMS 962 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ D+L + + + T+ L + L+ V + + E +++ L + + Sbjct: 963 TLIRDLLSFSRITT--RQEVTETVSLAETLSMVVLDLEVMIQETGAEMRI---HPLPTVL 1017 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST---------------------VILKAARDNGDFI 720 DR +L+Q+F +LSNA+ F K S ++ R + Sbjct: 1018 GDRSQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEVSAQLVNVSELPSTVRPTRSVAAYY 1077 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V +NG E +F F + + +G G+GL+I E + HGG ++ S Sbjct: 1078 RIDVTDNGIGFNEKYLDRIFQVFQRLHGKSEFQGTGIGLAICEKVVANHGGVITAQSQPG 1137 Query: 780 GVTTINCRIPS 790 T + +P+ Sbjct: 1138 EGATFSVYLPA 1148 >gi|20260804|gb|AAK54092.2|AF362373_1 histidine kinase DhkL [Dictyostelium discoideum] Length = 1709 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 139/271 (51%), Gaps = 13/271 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSP 583 E SI P+ + + + N T ++ + E+++ L + I+ S ++ +S+++R+P Sbjct: 786 FEASISPVLDQFQQILYYNCTKRDVTQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTP 845 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 ++NIIG DLL + SL+ Q Y+E I SS LL ++NDILD++ ++AG + ++Y Sbjct: 846 MSNIIGMADLLLDT---SLSQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYE 902 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702 + N +++V +S+A ++ + + D K+ + + RL QI + +L N++ F+ Sbjct: 903 SFDFNATVSQVVESMAQRVQSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFT 962 Query: 703 SKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 KG I D D + +K + G I ++ +F F R+ G GL Sbjct: 963 DKGEISICCLLNDETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGL 1022 Query: 757 GLSIVESFINL-HGGHVSISSSDEGVTTINC 786 GL+I + ++L G +S+ S +T C Sbjct: 1023 GLAICKELVHLAFNGEISVESQYGHGSTFTC 1053 >gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii] Length = 909 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L+ + Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L + V D RL QI + ++SNA+ F+ +G T++ +A D+ SV++ G + Sbjct: 391 PL-AVVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SNQDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 416 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTIL 620 ++ + ++ FV +VS+ELR+PLT+I G+ + L L K++ Y + I S + Sbjct: 180 KEVEAMRRDFVANVSHELRTPLTSIHGYAETLAED---DLEDKETVYRFLSIIENESARM 236 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ND+LDL +++G + + L +++N V + + E N+ I V D G F Sbjct: 237 TRLINDLLDLEKLESGEASFSKEDVELGEVVNYVMRIVEPLASEKNVSINVDVDE--GIF 294 Query: 681 V-ADRQRLLQIFSKILSNAMDFS---SKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735 V D RL+Q+ ++ NA+ ++ G I L+A N + V++ G IPED Sbjct: 295 VEGDFDRLVQLLLNLVDNAVKYTFAKEHGPKEIWLRAYAQNNSAMIEVEDTGVGIPEDSL 354 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 K +F RF V A + G GLGL+I + HGG +S+ S T + ++P K+ Sbjct: 355 KHIFERFYRVDKARSRKMGGTGLGLAITRFIVEKHGGTISLESEYGTGTILKVKLPLKK 413 >gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 571 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 15/261 (5%) Query: 529 SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 ++ P+ NA + V +VT++ R ER L EA AD+ K+ F+ +S+E+R+P Sbjct: 137 TVFPVRNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTP 196 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + ++G DL + L+ +Q +Y+E S+ LL L+NDILD + ++AG+++L+ Sbjct: 197 MNGVLGMLDLALDT---PLDEEQREYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQ 253 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 L L+ + + E + ++ +G V D RL Q+ +L NA+ F+ Sbjct: 254 VFRLRKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDPMRLRQVLVNLLDNALKFT 313 Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 G + ++A ++ FSV ++G I + + +F RFV RR G GL Sbjct: 314 EAGRVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFVQADGSLSRRHKGTGL 373 Query: 757 GLSIVESFINLHGGHVSISSS 777 GL+I + L GG + + S+ Sbjct: 374 GLAICKRLALLMGGDIRVDSA 394 >gi|182412925|ref|YP_001817991.1| histidine kinase [Opitutus terrae PB90-1] gi|177840139|gb|ACB74391.1| histidine kinase [Opitutus terrae PB90-1] Length = 531 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 22/251 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG--SLNSKQSQYV 610 +AL E R+AD+ K+ F+ +S+ELR+PLT ++ LL T +L+++ Q Sbjct: 144 QALREAEAKARRADQTKDQFLAALSHELRTPLTPVL----LLATEAAAQPALDARARQDF 199 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENN 666 E I+ + + L++D+LDL + G MKL VL D + V+ A K E Sbjct: 200 EMIARNVALEARLIDDLLDLTRISRGKMKLEKQPQDVLHVLRDAMENVRPDFAEKRLELT 259 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVK 724 + +S D RL Q+F +L NA F+ G V ++ A D I + Sbjct: 260 TVLPALS----AVVSCDGARLQQVFWNVLKNAAKFTPVGGKVTIQVRFAPDGAQVITEIT 315 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR---GQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +NG + VF FV H G R G+GLGL+I S + LH G + S Sbjct: 316 DNGMGMTAAELGRVFEAFVQGDHANAGGAHRFGGLGLGLAISRSLVVLHDGSIEAQSDGP 375 Query: 780 G-VTTINCRIP 789 G TTI R+P Sbjct: 376 GHGTTITIRLP 386 >gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 991 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 10/222 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL +IG TDLL S +L+++Q ++ + IS+S LL LVNDIL Sbjct: 340 KSQFLANMSHEIRTPLNGVIGMTDLLLES---ALDTEQRKFAQTISSSGRNLLRLVNDIL 396 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687 D + ++A +++ Y L D+L EV A HE N+ + + D + D RL Sbjct: 397 DFSKIEANKLEIEYLDFDLLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAARL 456 Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 QI ++SNA+ F+++G V L+ D I F+V + G I + ++VF F Sbjct: 457 QQILVNLVSNALKFTAEGEVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPFT 516 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 R+ G GLGLSI + + SS E +T Sbjct: 517 QADGSMIRKYGGTGLGLSISNQLARKMNSEIHVQSSPENGST 558 >gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 1236 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 170/383 (44%), Gaps = 34/383 (8%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485 E KY ++ ++ +EG+ P GR +NPA + +P I I Sbjct: 555 EAKYRSI-------FENAAEGICQTTPQGRYLSANPALAQIL----GYATPADLIEGITD 603 Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539 ++ Y + + F A +++ F+ + G + +S++ ++ Q + Sbjct: 604 IKTQVYIKPNRRAEFIAEMQANSVVSGFESQVYRQDGNIIWISENA---RVVRDATGQII 660 Query: 540 L---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T ++T+ A AL + EA A K++F+ ++S+ELR+PL IIG++++L Sbjct: 661 CYEGTVEDITERKAASVALKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTE 720 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 S +E I + LL L+NDILD++ ++AG M L ++ L+ V Sbjct: 721 EAEDSGYRHIVPDLERICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVIS 780 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + N+ ++V ++ AD ++ QI +LSNA F++ G + LK + Sbjct: 781 TAQPLVDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNAAKFTTAGQ-IKLKVSPQP 839 Query: 717 GDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +F F V + G + + +F F RR G GLGL+I + F Sbjct: 840 AEFPNTAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQ 899 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 + GG ++I S + +T +P Sbjct: 900 MMGGTITIDSQLDCGSTFTVILP 922 >gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 20/258 (7%) Query: 551 AERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 A L E+ E R+ A +K+ F+ +VS+E+R+PL +IGF L+ + +Q Sbjct: 310 AHATLYEELEVARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLI-LEGMADDPEEQ 368 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Q++ S LLN++NDILD+A ++AG M+L Y+ + LN+L ++V+ + + N Sbjct: 369 NQFLAEAHNLSIHLLNIINDILDIAKIEAGKMELTYAPVKLNELFSDVESFMRPQAEMRN 428 Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAAR 714 + ++ + ++ QRLLQ+ +L NA+ F+ +G + L+ + Sbjct: 429 LSFRMQMPATSDEIIVQSNYQRLLQVMLNLLGNAIKFTHEGGVTVSADLVLKKSKLQDQQ 488 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G V + G + D +F F V + Q G GLGL+I + + GG V Sbjct: 489 FPGLVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVEAMGGEV 548 Query: 773 SISSSDEGV-TTINCRIP 789 S EG+ +T+ +P Sbjct: 549 HFYSLGEGLGSTVTFTVP 566 >gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum DSM 5476] gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum DSM 5476] Length = 487 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 11/234 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + + ++++KN F+ VS+ELR+PLT I G+++ + + +G L + + + + IS + Sbjct: 237 DEISNSEKLKNEFISSVSHELRTPLTAIQGWSETIMSMGVGDLETTK-KGMRVISNETGR 295 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKVISDGKL 677 L ++V ++LD + + G KLN + D+L E++++ I T+ + + D ++ Sbjct: 296 LSDMVEELLDFSRIQDGRFKLNKDRM---DILAELEEAVLIYTEHAHREGKQFIYHDIEM 352 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 F+ DR R+ Q+F I+ NA+ +S G TV +KA D+ + I +V + G I E Sbjct: 353 LPFIFGDRNRIRQVFINIIDNALKYSDAGDTVTVKAEADDANIIITVSDTGCGIAEKDLP 412 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 V +F RRG G+GL++ +++H G + I S+EGV TT+ +P Sbjct: 413 LVKEKFYK--ANNTRRGSGIGLAVAVEIVSMHDGALEI-DSEEGVGTTVTITLP 463 >gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 905 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT LLKTS L Q+ Y++ I S+ LL Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTS----LTPSQTDYMQTIEKSARNLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILD + ++AG ++L + L D LNE + H+ + + + D + ++ Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLRVDADVPDYL 400 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 D RL Q+ + + NA+ F+ +G+ + +G+ +++ G I ++ Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTEQGNVDVHIEQTGSGNHKVRLNVQIRDTGIGISQEQQH 460 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG + S Sbjct: 461 QLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 502 >gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1062 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ R+E L + E+ +A+ K F+ ++S+E+R+P+ IIG T L + GS Sbjct: 369 NLHGRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALDA--GSPE 426 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ ++ S S+ LL ++NDILD + +DAG +++ + LN+L++ + A+ Sbjct: 427 EKRD-FIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQ 485 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720 + I + D L + +A D RL QI ++SNA+ F+ G V+ K A Sbjct: 486 DKGIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPAGEVVVRVEKVAELASGVA 545 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV++ G I + +F F R+ G GLGL+I + + L GG + + S Sbjct: 546 CRFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDS 605 >gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1751 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 21/245 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSKLGSLNSKQSQ 608 R+ D +K F+ VS+ELR+PLT+++GFT L++ +++ K Q Sbjct: 1495 REVDRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQ 1554 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I + + L L+ND+LD+A ++AG M+ N + + ++L S AT + + Sbjct: 1555 NIKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTSVVEILETA--SAATYPLFDKKK 1612 Query: 669 IKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I +I D L + D+ R++Q+ +LSNA+ F+ +GS V A ++ + S+ + Sbjct: 1613 IDLIKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGS-VTCCAKLEDDQLVISITDT 1671 Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I E+ +F RF N + G GLGL I + + HGG + + S+ +T Sbjct: 1672 GIGIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTF 1731 Query: 785 NCRIP 789 +P Sbjct: 1732 FFSLP 1736 >gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 484 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622 +++++K+ F+ +S+ELR+PLT+I G+++ L + G + ++++ ++ IS + L+ Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIISKETDRLIG 296 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + MKL + L +LL E+ ++ TK + ++IK+ SD K Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEK-PIIYG 355 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+F I+ NA+ FS + + L A + I +V+++G I ++ + V +RF Sbjct: 356 DVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEHLRRVKDRF 415 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 N G G GLGL+I + + LHGG + + S T + ++P E Sbjct: 416 FQVNPLNG---GTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463 >gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4] gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1969 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 108/410 (26%), Positives = 192/410 (46%), Gaps = 61/410 (14%) Query: 413 IWMFENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466 I MF + VDL E++ +L ++ E + V DG I +NPAF S+ Sbjct: 808 ILMFYTILSSVDLKEIERKESRIQSLFRISNEAL--------VVHKDGLITDANPAFESM 859 Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-----QGTLEL- 520 ++ + L Y +S W+ A+ F+ L G +E Sbjct: 860 FQIKLQDL--------------LYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETT 905 Query: 521 -LSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKAD---EIKNSF 572 + S + + N T + +++ D + + L E + ALRKA+ E K F Sbjct: 906 GIDSSGRTFQVEVRTNKATYDGEPVDVISIID-ITGRKQLMEADYALRKAEAANEAKVIF 964 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + VS+ELR+P+ ++ D+L+ + +L+S Q +++ I S LL+L+NDILD + Sbjct: 965 LTTVSHELRTPINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSK 1021 Query: 633 VDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++AG M+ + Y +L L N ++ ++ ++E + + + D + V D++R+ QI Sbjct: 1022 IEAGKMEIIKYDFSILKMLDNSIR-IVSKNIYEKGLDLCIFIDPNVPVIVNGDQRRIKQI 1080 Query: 691 FSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VS 744 LSN++ F++ G +I +K D+ F V+++G I + +F F + Sbjct: 1081 LLNFLSNSIKFTNHGQIIIRVKLESDDSTHSLIKFDVEDSGIGIKTEHLNQLFASFSQID 1140 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIP 789 + + + +G GLGLSI + + GG V + S+ GV TI C IP Sbjct: 1141 SGNSRKYQGTGLGLSISKRLCKMMGGDVKV-KSEFGVGSTFSFTIPCGIP 1189 >gi|153868269|ref|ZP_01998285.1| sensor histidine kinase/response regulator [Beggiatoa sp. SS] gi|152144410|gb|EDN71714.1| sensor histidine kinase/response regulator [Beggiatoa sp. SS] Length = 221 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A A+ K L A K+ F+ ++S+ELR+PL +++ LL +K G+L KQ Y Sbjct: 6 ARAAIEIKANELELARGYKSEFLANMSHELRTPLNSLLILAQLLGNNKSGNLTDKQVSYA 65 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I ++ + LL L+NDILDL+ V+AG M++N + L+DL+ ++Q E + Sbjct: 66 QTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEAVSLSDLMETLEQKFRPLTQEKGLAFH 125 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 + L + + D QRL QI + +LSNA F+++G + + D+I SV + G Sbjct: 126 IHQADNLPALLQTDAQRLKQILNNLLSNAFKFTTEGEIKL--SLNPKSDWIAISVIDTGI 183 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766 IP+D + +F F +RR + G ++ F+N Sbjct: 184 GIPQDKQQQIFEAFQQVDGTTRRRHLRPGPRVI-YFLN 220 >gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 791 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%) Query: 542 FVNVTDSVRA--ERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 F + ++R ER K+ A R +A+ K++F+ ++S+ELR+PL IIG++++ Sbjct: 254 FNTMAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAIIGYSEI 313 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ + + ++ I S LL L+NDILDLA +++G +++ I L LL++ Sbjct: 314 LQEECEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLPQLLHD 373 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712 V+ ++ + +N R+ + S L + ++D RL QI +LSNA F+ G T+ ++ Sbjct: 374 VRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLLSNAAKFTEHGRITLRVQP 433 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + + G FSV +NG + +F F R+ G GLGL++ L GG Sbjct: 434 SEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKYGGTGLGLALSRRLAQLLGG 493 Query: 771 HVSISSSDEGVTTINCRIP 789 + + S +T + +P Sbjct: 494 DIRVQSELGVGSTFSVHLP 512 >gi|296086775|emb|CBI32924.3| unnamed protein product [Vitis vinifera] Length = 590 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 164 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 223 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS++L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 224 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 280 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + L F V D +RL+QI ++ NA+ FS++G+ I ++ Sbjct: 281 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 340 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD+ DF VK++G+ I P+D+ K +F +F R G GL Sbjct: 341 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 399 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GGH+ I S G Sbjct: 400 GLAICKRFVNLMGGHIWIESEGLG 423 >gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 622 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + + F D RLLQ+ + +++NA+ + +GS + + + F V Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 555 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I ++ K VF+RFV N + G+GLGL+I + + GG + ++S + Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 613 EFSFILPSHE 622 >gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae] Length = 2341 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1858 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1917 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1918 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1974 Query: 655 KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 +++ + + KV D + + D RL QIF +LSN+ F+ KGS TV Sbjct: 1975 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2031 Query: 709 ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762 + R+ I SV + G IPE+ +F F S A R G GLGLSI + Sbjct: 2032 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2090 Query: 763 SFI-NLHGGHVSISSSDEGVTTI 784 + I ++ GG + + S+ TT+ Sbjct: 2091 AIIEDVLGGAIWLDSTPGVGTTV 2113 >gi|218531747|ref|YP_002422563.1| Hpt sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524050|gb|ACK84635.1| Hpt sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 909 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E ++ +A+ K+ F+ +S+E+R+P+ ++ +LL ++ L +Q +Y + I+ Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 315 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD A V+AG +++ + D+ + V A + + + D Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730 G + S + D RL Q+ +SNA+ F++ G ++ ++ R+ + +V + G I Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEREASGPVLRIAVFDTGIGI 435 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D +F F RR G GLGLSI E I GG V + S +T RI Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIVAMGGRVGVESRLGEGSTFWARI 495 Query: 789 P 789 P Sbjct: 496 P 496 >gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] Length = 916 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 131/256 (51%), Gaps = 15/256 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A++ L E E L K+ F+ ++S+ELR+PL +I+ +++L + L +++++ Sbjct: 486 KAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQDHLTDEETEF 545 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S LL L+NDILDL+ V+AG + + ++ + ++++ +++ + A + NI Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNIDF 605 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----------KAARDNGD 718 + +D + F D +R QI +LSNA F+ GS + +D D Sbjct: 606 HISKADHVVDVFYTDEKRFQQIIKNLLSNAFKFTEHGSVTLAINQLAQSQLTSNMQDISD 665 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +V + G IP+D + +F F R+ G GLGLSI + F L GG +++ Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725 Query: 775 SSSDEGVTTINCRIPS 790 S + ++ IPS Sbjct: 726 QSEEGQGSSFTLTIPS 741 >gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174] gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L + E + F+ ++S++ RSPLT+I G+ + + + Q +Y++ IS + Sbjct: 237 DKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMIDGTIPV--EMQEKYLKIISYEAER 294 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L +L L +D L+ +N ++ S NI +++I GK Sbjct: 295 LEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNILLELILSGKELM 354 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +++ Q+ +LSNA+ FS ST+ L+ NG SVK++G IP+ + ++ Sbjct: 355 AQADMEQIQQVLYNLLSNAIKFSPDNSTITLETTEKNGKIFVSVKDHGIGIPKASLQKIW 414 Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 RF + RG+ ++G GLGL+IV+ ++ HG H+++ S+ EGV T Sbjct: 415 ERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVIST-EGVGT 459 >gi|153854045|ref|ZP_01995378.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814] gi|149753427|gb|EDM63358.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814] Length = 899 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 147/271 (54%), Gaps = 8/271 (2%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584 E + P N+ + ++ E+ EK EA L K ++++ + ++ +S++LR+PL Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686 Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 T+I G ++LL S ++K+ Y++ I S L+NLV ++L + ++ G + L + Sbjct: 687 TSISGNASNLLSNSDSFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIT 745 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 +++D++ E I K E++I ++ + L D + ++Q+ I+ NA+ ++ Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761 K S ++++ + I S+ ++G+ I +++ +F+ F S A++ RR +GLGLS+ Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +S IN HGG +++S + T +P+ E Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894 >gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 15/252 (5%) Query: 541 TFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSYELRSPLTNIIG 589 +F+ +T+ V AER E+ + L + +K+ FV +S+ELRSP+ I+G Sbjct: 521 SFMGITEDVTAERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILG 580 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 + +L+ ++ +E I ++ + ++V+++LD++ + +G ++L+ + L Sbjct: 581 WARILRGR--APEPPTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPS 638 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ ++I I + D + S D R+ Q+ +LSNA+ F+ G + Sbjct: 639 VIRSALEAIQLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRID 698 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + R SV + G I +F RF R+ G+G+GLSIV+ + L Sbjct: 699 VALRRAGAHAALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVEL 758 Query: 768 HGGHVSISSSDE 779 HGG V ++S E Sbjct: 759 HGGTVEVASQGE 770 >gi|317489065|ref|ZP_07947590.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|316911797|gb|EFV33381.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] Length = 562 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 20/282 (7%) Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 ++I F+D L+G E L V E ++ L A +L R L + N Sbjct: 267 SLIAGFNDMAGELRGMYEHLESQVQERTV-DLREANALLE--------RQRDKLEQLNAD 317 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + + K+ + V++ELR+PLT+II F + + + N + E I +S ILL Sbjct: 318 LAQETQFKSDLLSMVNHELRTPLTSIITFAQISREA-CDPANEHDRRSWEEIEKNSRILL 376 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGS 679 N++N++LD+A DAG M+ + L D+ VK ++A + +E + KV SD L + Sbjct: 377 NMINNMLDIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVN 436 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI-PEDMCK 736 D ++ ++ + SNA+ F+ G ++ L+ A D + S+ ++G I PED + Sbjct: 437 --GDYEKTTRMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQAR 494 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RFV R+ G GLGL++V + ++ G VS+ S Sbjct: 495 -IFERFVQVDSTSTRKYNGSGLGLALVREYGDMQGFAVSVES 535 >gi|302337894|ref|YP_003803100.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635079|gb|ADK80506.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 727 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 136/264 (51%), Gaps = 20/264 (7%) Query: 530 IIP-LPNAQTMLTFVNVTDSVRAE-RALTEKN----EALRKADEIKNSFVQHVSYELRSP 583 +IP LP + N D +R + + L E+N + L +A+ K+ F+ +VS+E+R+P Sbjct: 189 LIPELPGEHPLSELYNALDVMRHDLQQLDEQNRDAMQRLEEANRAKSDFLANVSHEIRTP 248 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L IIG +LL+ + +LN +Q +++ + SS L++ VND+LDL+ ++ G M + Sbjct: 249 LGGIIGAAELLQNT---ALNDEQQHFLQILQGSSEALMSGVNDVLDLSKLEQGAMAIVPR 305 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFS 702 L+ LLN + + + + + + + + ++ D RL QI +L NA+ F+ Sbjct: 306 PTNLSALLNGIATIFRPRCRKKGLELFLTCEADEKQEYLVDPIRLRQILMNLLHNALKFT 365 Query: 703 SKGSTVI----LKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752 GS + +++G+ + FSV++ G IP++ +++F +F + N Sbjct: 366 PTGSIRLDCRSKGIQKEDGELMYRHDFSVQDTGIGIPQEKIETIFEKFTQIHNTEVQNFG 425 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL I + GG + + S Sbjct: 426 GSGLGLHIAAVLVAKLGGTLEVVS 449 >gi|296446361|ref|ZP_06888306.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296256134|gb|EFH03216.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 750 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 9/246 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AE+ +K EA A+ K+ F+ ++S+ELR+PL IIGF+++++ G+L S K +Y Sbjct: 500 AEQYHLQKGEA-EAANLAKSQFLANMSHELRTPLNAIIGFSEMMQAQVFGALGSPKYVEY 558 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +I LL+++ DILD++ ++AG ++L S I L+ + ++ I Sbjct: 559 CSHIHQGGRYLLDVLTDILDMSRLEAGRVRLEESEIDLSGAARATAER--SRRAAEAKGI 616 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++I D + G D +++ + ++SN++ F++ G V L+A R + V++ G Sbjct: 617 ELIVDAREGLRCCGDHDAIVKAIAVLVSNSLKFTAAGGCVRLRARRSYRAVLIFVEDTGC 676 Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I ++ F A +G GLGL+I S + LHGG + I S GV TI Sbjct: 677 GIDARAVAALGRPFEQPATVMENGMKGSGLGLAIARSLMALHGGSLRIRSR-VGVGTIAM 735 Query: 787 -RIPSK 791 RIP+K Sbjct: 736 LRIPAK 741 >gi|288870015|ref|ZP_06112594.2| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288868794|gb|EFD01093.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 975 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 135/275 (49%), Gaps = 23/275 (8%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586 P + + V D +R E+A E+ +AL + A K+ F+ +S+++R+P+ Sbjct: 417 PFNDDVLTICLVKFLDELRQEQARQEQLLRDALASAQAASRAKSDFLSRMSHDIRTPMNA 476 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYV----EYISASSTILLNLVNDILDLATVDAGIMKLNY 642 IIG S +G + S+ V + I SS LL+L+NDILD++ ++ M++ + Sbjct: 477 IIGM------STIGQIKLHDSRTVKDCFQKIDTSSKYLLSLINDILDMSRIETDKMEIAH 530 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701 + E+ Q I + E I ++ L S ++ D R+ QI +LSNA+ F Sbjct: 531 DLFDFRAFVEEINQIIYPQTLEREIAYEMRHLEPLESHYIGDSLRMKQILMNLLSNALKF 590 Query: 702 SSKGSTV---ILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 + G +V I + R NG +I F +++NG + E+ +F F A R G Sbjct: 591 TQPGGSVSVDIAEEKRTNGYAYIKFVIEDNGIGMSEEFMDRLFQPFEQEAPGNARNNVGS 650 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLSIV S + L GG +S++S + + +P Sbjct: 651 GLGLSIVYSLVQLMGGTISVTSHKQEGSRFTVTVP 685 >gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 469 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ + + F ++S+ELR+P+T + G+ +LK +L ++ +Y++ I + L Sbjct: 234 LQRYRDTRQEFFANISHELRTPITYLEGYAQVLK-KRLYETEEEKDKYLDIIHEEAMRLQ 292 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +LV+D+ DLA ++ G + L+ I L ++ + Q I K E N+ ++ + + Sbjct: 293 HLVDDLFDLAKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIY 352 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D R Q+ +L NA+ ++ KGS V+ N FI+ +V++ G IPED +F+ Sbjct: 353 GDGLRTEQVLLNLLENAVRYTEKGSIVV--ELDQNRSFIYIAVEDTGMGIPEDEIPYIFD 410 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V + Q G GLGL I + + L GG + + S Sbjct: 411 RFYRVEKSRSRQYGGTGLGLPIAKKLVELQGGELKVFS 448 >gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] Length = 919 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 132/255 (51%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+++ V+ ER+L A +A++ K+ F+ VS+ELR+PL IIG +LL++ Sbjct: 416 AICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL 475 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + N + ++ ++ + SS++LL +++DILD + +++ +K++ +++ V + Sbjct: 476 ---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISN 532 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + ++ I + + V D R+ Q+ S +L+N++ F++ G + L RD Sbjct: 533 YLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHLYRDE 591 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F + + G I E M +F F VS G GLGL+I E INL G +S+ Sbjct: 592 YYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISV 651 Query: 775 SSSDEGVTTINCRIP 789 S + + RIP Sbjct: 652 VSQENVGSRFTVRIP 666 >gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 849 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%) Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 W++ + + + GQ L ++ G + + ++T Q+ L Sbjct: 153 WRQRMIRRWDEDPVEPEIVRRATGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491 ID + +G +F R+ L N +R+++ L PG I + Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261 Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542 E+ G W A + +F + L G E D V+E+ P+ + Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ R + AL A A K++F+ ++S+E+R+P+ I+G DLL + L Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + E I +S LL ++NDILD + ++A + L+ L ++EV + K Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 I + + D L + FV D RL Q+ + ++ NA+ F++ G +I L+ A Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D +V++ G I + VF F RR G GLGL+I I L G V + Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549 Query: 776 S 776 S Sbjct: 550 S 550 >gi|158334651|ref|YP_001515823.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158304892|gb|ABW26509.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 504 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 6/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+E + A E + FV +VS+ELR+PLT + G+ ++ + +L Q + +E + Sbjct: 265 LSEAWHEQQHATERQREFVGNVSHELRTPLTIVRGYLQSIQ-RRGDNLTEMQREALEIST 323 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A + + + L+ D+L LA D G M + T++LND+ EV ++A K ++ I ++ + Sbjct: 324 AEANLTIQLLQDLLCLARADDGYMPYHLETLILNDVAVEVV-NMADKFNQRQIDLEF--E 380 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L AD +RL Q+ ++ NA+ +S+ V +K + + V + G IP Sbjct: 381 SPLIPVFADAKRLQQVLVNLVENAIKYSATTEPVTVKLEQREDSALIHVCDRGDGIPLKQ 440 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF + A GVGLGLS+V++F GG VS+ S++ +T +P Sbjct: 441 QSRIFERFYRLDEARARCTGGVGLGLSLVKTFTEGMGGQVSVLSAEGEGSTFTVTLP 497 >gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40] gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 942 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A +K+ F+ + S+E+R+PL I+GF++LL+ ++L N++Q Y+ I S+ LL + Sbjct: 267 QASRVKSEFLANTSHEIRTPLNGILGFSELLRKTEL---NNQQVDYLTTIEESAKGLLTI 323 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682 +NDILD + ++ G + L Y + + L+ + + +E NIR+ I D + + + Sbjct: 324 INDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTIIDHDVPENLLG 383 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737 D RL Q+ S ++SNA+ F+ G ++L ++D F V ++G + +D + Sbjct: 384 DPLRLKQVLSNLVSNAIKFTDVG-YILLGVSKDQSSENQFTLKFRVTDSGIGLSQDQQER 442 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F+ F + ++ G GLGL+I + ++ G + + S+ Sbjct: 443 LFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVEST 484 >gi|332991838|gb|AEF01893.1| aerobic respiration control sensor protein ArcB [Alteromonas sp. SN2] Length = 785 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +A KA K F+ +S+ELR+PL I+G + +L+ ++L N +Q + Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---NEEQFSW 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I AS+ L N+ NDI+DL +D ++L+ T+ L D E+ I + + + Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKVELSLKTVSLRDFTEELSSIIRLLAGDKQLEL 383 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--FI-FSVK 724 K L V D RL QI IL NA+ F+ KG + ++A + D F+ F ++ Sbjct: 384 KTTIKEPLPRLVEVDGTRLRQILWNILFNAVKFTQKGHVSLSIEATKPENDVAFVTFVIE 443 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IPE+ + +F + H + G G+GL+I + ++L G++ ++S T Sbjct: 444 DTGVGIPEEEIEKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGNIKVTSVVGKGT 503 Query: 783 TINCRIP 789 +P Sbjct: 504 RFEIELP 510 >gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] Length = 946 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + D RL Q+ S +LSNA+ F+ G ++ + Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ SV++ G IP +F+ F QR +G GLGL+I E I++ G ++ Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671 Query: 774 ISSSDEGVTTINCRIP 789 + + + RIP Sbjct: 672 VETEPGMGSRFTIRIP 687 >gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1231 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 15/255 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R + K L A K+ F+ ++S+ELR+PL +++ L+ + G L+ + + Sbjct: 535 KARRDVERKAADLETASRYKSEFLANMSHELRTPLNSLLLLARNLRDNGSGRLDPDEVEA 594 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + LL L+NDILDL+ V+AG + L+ ++ L D+ + I + Sbjct: 595 AGIIYRNGNDLLMLINDILDLSKVEAGKLSLHLESVPLADVAGSIMADFGHVAEGKGISL 654 Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN--------G 717 I +G + DR+RL QI ++SNAM F+ G V+ L A D G Sbjct: 655 HHEIGEGLPQAIRTDRRRLEQILRNLVSNAMKFTETGGVVLRLHLADAADGRPSSRGAAG 714 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 D + FSV + G I D +++F F RR G GLGLSI L GG V++ Sbjct: 715 DMVAFSVIDTGIGIAADKHQAIFEAFQQVDGTSSRRYGGTGLGLSITRELARLLGGRVTL 774 Query: 775 SSSDEGVTTINCRIP 789 +S +T +P Sbjct: 775 ASQPGRGSTFTFLVP 789 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 591 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 647 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 648 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 707 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 708 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 767 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827 Query: 775 SSSDEG 780 S+EG Sbjct: 828 -HSEEG 832 >gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 874 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 12/242 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ ++ D +KN F+ VS+ELR+PLT+I G LL +G + S++++ Sbjct: 623 RDITER----KRVDRMKNEFISTVSHELRTPLTSITGALSLLLNGAVGQPTEEFSRFLQI 678 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HENNIRI 669 +S L L+ND+LD+ + AG +K ++S + ++ V+QSI T ++ + Sbjct: 679 AYKNSQRLALLINDLLDMEKITAGGVKYSFS---VEPVMPLVEQSIDTNRVYGQQHEVEY 735 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 K+I D R QI + LSNA FS +G TV + R SV + G Sbjct: 736 KIIHREDASLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRRENYVRISVTDRGPG 795 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + +F +F ++ R Q+ G GLGL I G + S T Sbjct: 796 IPPEFYTRIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVE 855 Query: 788 IP 789 +P Sbjct: 856 LP 857 >gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 714 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 6/216 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K D +K+ + VS+ELR+PL++I+GF +LL+ + K ++YVE + + L N Sbjct: 480 QKMDHVKDELISTVSHELRTPLSSILGFMELLRYRQ--PTPEKTTRYVEIVHEEAKRLTN 537 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND LD+ ++ G + L LL E ++ + I ++D A Sbjct: 538 LLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETHTIH--AVTDDDPILIFA 595 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++ Q+ +LSNA+ +S + ++ + I SV + G IP +F +F Sbjct: 596 DEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQAILSVTDYGIGIPPTAFDKLFTKF 655 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V N+ + G GLGL+I + I HGG +S+ S Sbjct: 656 YRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVES 691 >gi|298247425|ref|ZP_06971230.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550084|gb|EFH83950.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 624 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 176/382 (46%), Gaps = 56/382 (14%) Query: 441 DHLSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +H+++GV + +G I N A R L + E+N H + I A Sbjct: 250 EHIADGVMLMDVNGCILRENQAARHIRELLQDEQN------HRQEITA------------ 291 Query: 498 DLFAAIITSFDDERKSLQGTLELL----SDSVLEY------------SIIPL-PNAQTML 540 L A I S ER+ L T+ + S+ V EY SI+P+ P +T + Sbjct: 292 -LLAGPIQSATTERRDLNFTVTAVVNTSSNEVREYMVNVSPLHLPKASIVPMHPRNRTTM 350 Query: 541 TFVNVTDS----VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF--TDLL 594 ++ S V + T + A +A+++K+ F+ ++ELR+PL + GF T L+ Sbjct: 351 EEQSLMASGAVVVWHDVTETRRLMAYAEAEQLKDEFITIAAHELRTPLAVLKGFAQTLLV 410 Query: 595 KTS--KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +T+ K L Q + ++ I +++ +++L +D+LD+A + AG + L++ + L LL Sbjct: 411 QTARGKGAELAEWQVEALQNIDQATSRMVDLASDLLDVARLQAGSLLLHFEPVDLIALLK 470 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVAD--RQRLLQIFSKILSNAMDFSSKGSTVIL 710 V + + + + + +D FV D +QR+ Q+ + I+ NA+ +S G + + Sbjct: 471 RVVTRLQVTTECHTLTLHIFTD----HFVVDIDQQRIEQVLTNIIGNAIKYSPLGGVIQI 526 Query: 711 KA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767 A+ + SVK+ G IPE +F RF+ NA G GLGL + + Sbjct: 527 DVDAQQQNTVLVSVKDTGIGIPEQQQGQIFGRFMRADNALNEGIAGTGLGLYLCRELVER 586 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGGH S + +T P Sbjct: 587 HGGHTWFESMEGEGSTFYLSFP 608 >gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1090 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 37/267 (13%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE AL + EA A+ K+ F+ +S+ELR+PL I+GFT +++ + +LN Sbjct: 569 DITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR--TLN 626 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q + IS S LL L+NDIL+++ ++AG + ++ L LL+ ++ + K Sbjct: 627 PEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQ 686 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718 E +++ ++ ++ D +L Q+ +L NA+ F+ +G V L+ + G Sbjct: 687 EKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGG 745 Query: 719 F----------------------------IFSVKNNGSSIPEDMCKSVFNRF-VSNAHRG 749 F F V+++G I + +F F + R Sbjct: 746 FRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQ 805 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 + G GLGL I F+ L GG++S+SS Sbjct: 806 AQEGTGLGLPISRKFVQLMGGNISVSS 832 >gi|239994514|ref|ZP_04715038.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii ATCC 27126] Length = 784 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 13/234 (5%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +A KA K F+ +S+ELR+PL I+G + +L+ ++L + +Q + Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---SEEQFNW 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I AS+ L N+ NDI+DL +D ++L+ TI L D E+ I + + + Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIRLLAADKQLEL 383 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724 K + L V D RL QI IL NA+ F+ KG ++ + + + +GD F ++ Sbjct: 384 KTTINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLTVSSTKPDGDKAYVTFVIE 443 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IPE +F + H + G G+GL+I + ++L G + +SS Sbjct: 444 DTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGEIHVSS 497 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1127 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N Q L + R + AL E A++ K +V +++ELR+PL +I+G++ +L Sbjct: 641 NRQNQLLSREIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPLNSILGYSQIL 700 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S+ +L + + V+ I S LL LV+ +LDLA ++AG ++L + + L D L+ + Sbjct: 701 LKSE--ALANTPREAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPTPLPLPDFLDGL 758 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + ++ G++ ++V AD +RL QI +LSNA+ F+ GS + Sbjct: 759 VNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFTDTGSVTLHVDC 818 Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769 R F V + G I P+D + +F F A G+RR G GLGL+I L G Sbjct: 819 RRE-VIRFDVVDTGIGIAPQDQ-QRIFLPFERGAA-GRRRGEPGTGLGLTITGLLTALMG 875 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G +S+ S +T + R+ +E Sbjct: 876 GDLSLQSEQGKGSTFSVRLYLRE 898 >gi|30263182|ref|NP_845559.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47528547|ref|YP_019896.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186032|ref|YP_029284.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|165868690|ref|ZP_02213350.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167632195|ref|ZP_02390522.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167637220|ref|ZP_02395500.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170684831|ref|ZP_02876056.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170704948|ref|ZP_02895413.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177650266|ref|ZP_02933267.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190564692|ref|ZP_03017613.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227813953|ref|YP_002813962.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229601422|ref|YP_002867446.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254685789|ref|ZP_05149648.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254723196|ref|ZP_05184984.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254738259|ref|ZP_05195962.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|254742573|ref|ZP_05200258.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254752574|ref|ZP_05204610.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|254761090|ref|ZP_05213114.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi|30257816|gb|AAP27045.1| sensor histidine kinase [Bacillus anthracis str. Ames] gi|47503695|gb|AAT32371.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49179959|gb|AAT55335.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|164715416|gb|EDR20933.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167514727|gb|EDR90093.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167532493|gb|EDR95129.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170129803|gb|EDS98665.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170671091|gb|EDT21829.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172084218|gb|EDT69277.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190564009|gb|EDV17973.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|227004608|gb|ACP14351.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229265830|gb|ACQ47467.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 458 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E NI I+ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 484 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622 +++++K+ F+ +S+ELR+PLT+I G+++ L + G + ++++ ++ IS + L+ Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIISKETDRLIG 296 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV ++LD + + MKL + L +LL E+ ++ TK + ++IK+ SD K Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEK-PIIYG 355 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+F I+ NA+ FS + + L A + I +V+++G I ++ + V +RF Sbjct: 356 DVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEHLRRVKDRF 415 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 N G G GLGL+I + + LHGG + + S T + ++P E Sbjct: 416 FQVNPLNG---GTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463 >gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16] gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16] Length = 589 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 155/345 (44%), Gaps = 59/345 (17%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLW-------KTEENRLSPGTHIRNIAATCSRYYNES 494 H+++GV F +G + SNPA + T E + + Y E Sbjct: 262 HMTDGVVAFSRNGEVIHSNPAAEEMLGRTITAEATYEELFGDLLSLEQVLQAPD--YLEE 319 Query: 495 DGWD---LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551 + W+ ++ FD +R+ G L +L D Sbjct: 320 ERWEGERFLQLLLAPFDRDRQG--GVLVVLHD---------------------------- 349 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +T++ RK +++ FV +VS+ELR+PLTNI + + L S + + +++ Sbjct: 350 ---VTQQ----RKTQDMQREFVANVSHELRTPLTNIRSYAETLSDSAGELPPATEKKFLG 402 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYS----TIVLNDLLNEVKQSIATKMHENNI 667 I S + ++V D+L L+ D+G +L+ + + DL N V + + H++ + Sbjct: 403 VILNESDRMTHIVQDLLTLSRFDSGKDELHLVRFPFDVAVQDLYNAVY--MEAQRHDHKM 460 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++++ D L + VADR+R+LQ+ I+SN++ ++ G +++ A R+ V ++G Sbjct: 461 KLRLEPD--LPAVVADRERVLQVMMNIVSNSIKYTPNGGHILVSAGREGDRVWMQVDDDG 518 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 IP +F RF V A Q G GLGLSI + ++ H G Sbjct: 519 IGIPPKDRPRIFERFYRVDKARSRQSGGTGLGLSIAKEIVDRHEG 563 >gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 563 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 132/250 (52%), Gaps = 8/250 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E +L E AD++K+ ++ +S+E+R+PL I GF++L+ + Sbjct: 321 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 377 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Y + I ++ +L+ L+NDILD++ ++A +K+ Y + +++L++ + S ++ Sbjct: 378 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 436 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +++ + F D RLLQ+ + +++NA+ + +GS + + + F V Sbjct: 437 PGGVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYV 496 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I +D K VF RFV N + G+GLGL+I + + GG + ++S + Sbjct: 497 RDTGIGIDKDKLKDVFGRFVKINDY---MEGIGLGLAICKGLVVKMGGLIHVTSELGVGS 553 Query: 783 TINCRIPSKE 792 + +PS E Sbjct: 554 EFSFILPSHE 563 >gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1271 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 26/248 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + TD E L ++ + +A K+ F+ ++S+E+R+PL +IGF++LL + + Sbjct: 779 DATDRKVYENTLKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSAR---AQD 835 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 SK + Y+ I S LL L+NDILD++ ++A + + + LL E+ + + Sbjct: 836 SKAASYINSIKTSGKALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTE 895 Query: 664 ENNIRIKVISDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSKGS---TVILK 711 +I KLG F+A D RL Q+ ++ NA+ F+ +G +V + Sbjct: 896 HTDI--------KLGYFIAADTPKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCE 947 Query: 712 AARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 A D D SVK+ G IP++ + +F F A + G GLGLSI +++ Sbjct: 948 AVNDERVDLYISVKDTGIGIPKEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMM 1007 Query: 769 GGHVSISS 776 GG + + S Sbjct: 1008 GGEIRVES 1015 >gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 862 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + + D++K++F+ ++S+E+R+PL I+GF+DLL + G + +Q++ Sbjct: 622 AEQEMREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTTEEVAQFI 680 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 681 ATINKNCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMPPGVELLL 740 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729 + +G D RL Q+ + +++NA F+ GS T + + G V++ G Sbjct: 741 RMPEGDKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIFVEDTGVG 800 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I E+ + +F RF + Q G GLGLSI ++ + G +S++S T R+P Sbjct: 801 ISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 858 >gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] Length = 946 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + D RL Q+ S +LSNA+ F+ G ++ + Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ SV++ G IP +F+ F QR +G GLGL+I E I++ G ++ Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671 Query: 774 ISSSDEGVTTINCRIP 789 + + + RIP Sbjct: 672 VETEPGMGSRFTIRIP 687 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ IK+ F+ +S+ELRSPL I+G+ LL+T + K++ + I ++ + L+ Sbjct: 1039 ANRIKDEFLAVLSHELRSPLNPILGWARLLQTREFQPAEIKKA--IATIERNAKLQAQLI 1096 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D+LD++ + G + L + L ++ +++ +I+I+ + D LG + D Sbjct: 1097 EDLLDVSRILQGKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDS 1156 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ +LSNA+ F+ + + ++ R + +V + G I + VF F Sbjct: 1157 DRLQQVIWNLLSNAVKFTPEEGKINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQ 1216 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789 RR G+GLGL+IV I LHGG + S EG I R+P Sbjct: 1217 ADGTTTRRFGGLGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLP 1264 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 5/237 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EAL + D K F +VS+E R+PLT ++G + + L + + + +E + + Sbjct: 340 KRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLANCATLLPAHEREQLEMVQRN 399 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVN +LD + ++AG ++ +Y L E+ + + + + V Sbjct: 400 GLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMELSVNCPSL 459 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735 DR+ +I +LSNA F+ G + L+ A D+ + F+VK+ G IP + Sbjct: 460 PAPVYVDREMWEKIVLNLLSNAFKFTMTGKIAVSLQWANDHIE--FAVKDTGIGIPAEEI 517 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GLS+V+ + +HGG V ++S + IP+ Sbjct: 518 PHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTISIPT 574 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|327439016|dbj|BAK15381.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 458 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 7/238 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VE 611 + L + + K D++KN F+ +S+ELR+PLT I G+ ++L++ + L K+ + + Sbjct: 223 KTLNYMADEIVKTDQLKNDFISSISHELRTPLTGIKGWAEMLESPE--GLTEKEINFGLR 280 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I++ S L+ LV D+L+ + ++ ++L+ + L+ EV + +K +E NIR+K+ Sbjct: 281 MINSESDRLIKLVEDLLNFSRYESNRIELHPTKFAYATLIEEVTLQLQSKANEKNIRMKL 340 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 S S AD ++ Q+ L N + FS S +++K NG I +++ G I Sbjct: 341 NSTPV--SIYADEDKIRQVLLNTLENGIKFSPHNSEIVIKQYESNGKAICIIRDEGIGIK 398 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ + + N F + G GLGL+I + I HGG + ++S T + +P Sbjct: 399 EEQIQHIMNSFYKADVKS--VGAGLGLAISRTIILKHGGTIEVNSVYGKGTEVFIELP 454 >gi|311109196|ref|YP_003982049.1| sensory box protein 11 [Achromobacter xylosoxidans A8] gi|310763885|gb|ADP19334.1| sensory box protein 11 [Achromobacter xylosoxidans A8] Length = 1111 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 128/243 (52%), Gaps = 15/243 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F++VT+ + + L E A + + K++F+ +S+E+R+PL I+G +LL S+L Sbjct: 480 AFIDVTEKYQLAQRLREAKAAADRGNAAKSAFLAAMSHEIRTPLHAILGHLELLSRSRLA 539 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q +E + ASS +LL ++D+LD + ++AG + L + L ++ + A Sbjct: 540 PV---QRNRLETVRASSGLLLATISDVLDFSKIEAGELSLEQTEFDLLEVASRALSMFAP 596 Query: 661 KMHENNIRIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + + G+LG+ + D RL Q+ +LSNA+ F+ +G V+L+ D Sbjct: 597 QAQAKGLALL----GELGAALRLPMRGDATRLGQVIHNLLSNAIKFTDQGQ-VVLRVRTD 651 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773 V+++G + E+ +SVF F ++A G+R G GLGL++ + GG +S Sbjct: 652 TTSIAIEVEDSGIGMTEEQTQSVFRAFSQADATIGRRYGGTGLGLTLCCRLVEAMGGSLS 711 Query: 774 ISS 776 + S Sbjct: 712 VRS 714 >gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 546 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 127/247 (51%), Gaps = 15/247 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R L ++ EA +A K+SF+ +VS+ELR+PL I+G++ +L + ++ Sbjct: 291 QRDLVDRAEAANRA---KSSFIANVSHELRTPLNAILGYSQILSMDIKQLKRPDLEESID 347 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIR 668 I+ + LL+L+ND++DL+ ++ G M L+YS + L + + Q++A H + Sbjct: 348 QITTAGQHLLDLINDVIDLSRIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNS--- 404 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVK 724 + ++ +G + D ++ +I ++SNA F+ G + +++ + + +V+ Sbjct: 405 LVLVCPNDIGLVMIDAPKVRRILLNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVR 464 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I D + +FN+F+ RR G+G+GL++ L GG +S+ S + Sbjct: 465 DTGIGIHPDQIEDLFNQFIQADSSSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGS 524 Query: 783 TINCRIP 789 T +P Sbjct: 525 TFRVHVP 531 >gi|291549940|emb|CBL26202.1| Osmosensitive K+ channel histidine kinase [Ruminococcus torques L2-14] Length = 899 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 146/271 (53%), Gaps = 8/271 (2%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584 E + P N+ + ++ E+ EK EA L K ++++ + ++ +S++LR+PL Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686 Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 T+I G ++LL ++K+ Y++ I S L+NLV ++L + ++ G + L + Sbjct: 687 TSISGNASNLLSNGDFFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIT 745 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 +++D++ E I K E++I ++ + L D + ++Q+ I+ NA+ ++ Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761 K S ++++ + I S+ ++G+ I +++ +F+ F S A++ RR +GLGLS+ Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +S IN HGG +++S + T +P+ E Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894 >gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato Max13] gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato K40] gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] Length = 917 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H ++ + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|73538799|ref|YP_299166.1| sensor histidine kinase [Ralstonia eutropha JMP134] gi|72122136|gb|AAZ64322.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 299 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E LR+A E+K+ F+ ++S+E R+P+ I T LL G L +Q + V ++ ++ Sbjct: 49 QAEQLRQATELKSRFLAYMSHEFRTPIVAIQSITRLLIDRVDGPLTPEQEKQVRFVRDTA 108 Query: 618 TILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +VND+LDLA ++AG + ++ + + L D L + + + T N + +I + Sbjct: 109 AEFAGMVNDLLDLARLEAGRVDVSPAWFDMVALFDALRGMFKPVLT-----NPEVSLIFE 163 Query: 675 GK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731 + +D +++ QI +SNA+ F+ G V + A R+ GD I FSV++ G IP Sbjct: 164 EPHDVSKLFSDDRKVSQILRNFISNALKFTPSGE-VRVSAKREPGDMIMFSVRDTGIGIP 222 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + +VF FV QR RG GLGL++ + L GG + S Sbjct: 223 AEAHGAVFGDFVQVDSPLQRRYRGSGLGLALSKRLAELLGGSIGFES 269 >gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 921 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 11/232 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL +N+A A K++F+ ++S+E+R+PL +IG LL+ S+ L+ +Q +V+ I Sbjct: 417 ALRARNDAAEAATRAKSAFLANMSHEIRTPLNAVIGMAALLQESR---LDQEQRIFVDTI 473 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 LL +++DILD + +++G ++L + L+ L +A + N+ + Sbjct: 474 RTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCHI 533 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI---FSVKNNG 727 + V D RL QI +L NA+ F+S+G + D N D + F V++ G Sbjct: 534 APDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDTG 593 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + + + VF FV RR G GLGL+I + ++L GG +S +SS Sbjct: 594 IGMSAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSS 645 >gi|257792781|ref|YP_003183387.1| histidine kinase [Eggerthella lenta DSM 2243] gi|325831117|ref|ZP_08164441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|257476678|gb|ACV56998.1| histidine kinase [Eggerthella lenta DSM 2243] gi|325487038|gb|EGC89484.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 562 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 20/282 (7%) Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 ++I F+D L+G E L V E ++ L A +L R L + N Sbjct: 267 SLIAGFNDMAGELRGMYEHLESQVQERTV-DLREANALLE--------RQRDKLEQLNAD 317 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + + K+ + V++ELR+PLT+II F + + + N + E I +S ILL Sbjct: 318 LAQETQFKSDLLSMVNHELRTPLTSIITFAQISREA-CDPANEHDRRSWEEIEKNSRILL 376 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGS 679 N++N++LD+A DAG M+ + L D+ VK ++A + +E + KV SD L + Sbjct: 377 NMINNMLDIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVN 436 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI-PEDMCK 736 D ++ ++ + SNA+ F+ G ++ L+ A D + S+ ++G I PED + Sbjct: 437 --GDYEKTTRMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQAR 494 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RFV R+ G GLGL++V + ++ G VS+ S Sbjct: 495 -IFERFVQVDSTSTRKYNGSGLGLALVREYGDMQGFAVSVES 535 >gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 607 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 164/357 (45%), Gaps = 26/357 (7%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I ++++G+ +G I NP + EE +L+P RN + Y+E D Sbjct: 264 ITYMADGIIAATKEGEILHVNPKAMEMLNIEEGQLAP----RNFNEIF-KPYDEEFEMDY 318 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 + E ++ Q L + +LE S P F+N ++ L + Sbjct: 319 LLEM-----SENQTGQRMLYVEDGVILEASYAP---------FINENGALGGIILLLQDV 364 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + +K + ++ FV +VS+EL++PLT I +T+ L L + S +++ + + Sbjct: 365 TSAQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVLENTELATS-FLQVVDGEAER 423 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKL 677 + LV D+L L+ +D N + LN+++ +K ++ K I I + D + Sbjct: 424 MARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEI-ITHLQDEPV 482 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + AD+ R+ Q+ ILSN++ ++ +G +I+ D G +++ G IP++ Sbjct: 483 HIY-ADKDRIEQVILNILSNSIKYTPEGGRIIVDLIVDEGVVTLKIRDTGIGIPKEDIAR 541 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF V A + G GLGLSI + I H G + I S + T ++ ++P E Sbjct: 542 IFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLPVTE 598 >gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus] Length = 2370 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 17/232 (7%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A + K+ F+ +VS+ELR+PL +IG ++LLK S L N +QS Y + I + LL++ Sbjct: 1883 EAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL---NGEQSGYADSIRVCADTLLSI 1939 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---F 680 +ND+LD + ++AG M + I LN+ + EV +++A E +K I +L Sbjct: 1940 INDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLELDPEMLV 1997 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735 + D RL QI +LSN+ F+ +GS V ++A D D SV + G IP++ Sbjct: 1998 MGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 2056 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 + +F F + ++ G GLGLSI ++ I N+ G V + S TT+ Sbjct: 2057 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 2108 >gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 479 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL K+++ + + V++ELR+PLT I G D + L Q + I S +L Sbjct: 243 ALEKSEQSRKRLLADVAHELRTPLTVINGTVDAMMDGVL----PTDEQQLGTIKEESLLL 298 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ D+ DL+ +AG +KL+ S I L DL+ + NIR++ + G L S Sbjct: 299 TRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLPSV 358 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFI-FSVKNNGSSI-PEDMC 735 D RL Q+ + +LSNA+ + G V + +A+ D + +V + G + PED+ Sbjct: 359 NGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPEDL- 417 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 K +F+RF V ++ G GLGL+IV+ + H G VS+ S+ TT +P++ Sbjct: 418 KHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLPAQ 475 >gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1761 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L+ N+T + L + ++ A++ K+ F+ ++S+E+R+P+ IIG + L ++ Sbjct: 1007 VLSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE 1066 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L N KQ YV I +S LL ++NDILD + ++AG + + L+ LL ++ Sbjct: 1067 L---NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMF 1123 Query: 659 ATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 + K + + + ++ D RL Q+ ++SNA+ F+ +G ++ L+ Sbjct: 1124 SVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQGEVLLSISQLERI 1183 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 D+ FSV++NG + E+ + +F F R+ G GLGL+I + + L GG Sbjct: 1184 EDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGE 1243 Query: 772 VSISS 776 + + S Sbjct: 1244 IGVES 1248 >gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides fragilis 638R] Length = 812 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PN + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ I ++T+LL L +DI+DL+ +DAG + + L Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + K+ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + V++ G I + ++VF+RF+ Q G GLGL + +S I Sbjct: 725 TVGYRIDTRQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782 Query: 768 HGGHVSISS 776 GGH+ + S Sbjct: 783 MGGHIGVIS 791 >gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 946 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + D RL Q+ S +LSNA+ F+ G ++ + Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 GD++ SV++ G IP +F+ F QR +G GLGL+I E I++ G ++ Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671 Query: 774 ISSSDEGVTTINCRIP 789 + + + RIP Sbjct: 672 VETEPGMGSRFTIRIP 687 >gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 629 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 233 IAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVG 292 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 293 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISG 349 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L +EV + KM + + + VI DR R+ Q+ LSNA+ + +GS + Sbjct: 350 LADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 407 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ F V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 408 FGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 465 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S E +T +P+K+ Sbjct: 466 GRIEVESELEKGSTFTLYLPNKQ 488 >gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1090 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 37/267 (13%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE AL + EA A+ K+ F+ +S+ELR+PL I+GFT +++ + +LN Sbjct: 569 DITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR--TLN 626 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q + IS S LL L+NDIL+++ ++AG + ++ L LL+ ++ + K Sbjct: 627 PEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQ 686 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718 E +++ ++ ++ D +L Q+ +L NA+ F+ +G V L+ + G Sbjct: 687 EKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGG 745 Query: 719 F----------------------------IFSVKNNGSSIPEDMCKSVFNRF-VSNAHRG 749 F F V+++G I + +F F + R Sbjct: 746 FRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQ 805 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 + G GLGL I F+ L GG++S+SS Sbjct: 806 AQEGTGLGLPISRKFVQLMGGNISVSS 832 >gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] Length = 803 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL+ +IG++++L ++ + I +S+ LL L+ND+L Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG + L T + L+ +V + + + + R ++ +G LG+ D+ +L Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQSKLR 407 Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 Q ++ NA FS G ++ ++ R+ G D++ FSV + G + ++ +F RF Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+I +F+ GG + + S+ T R+P Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513 >gi|209965184|ref|YP_002298099.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209958650|gb|ACI99286.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 420 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 29/257 (11%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 AER L E+ E R+ + K+ F+ + ++ELR+PL I+GF DLL G L N ++Y Sbjct: 163 AERQLAEQLEHSREENRRKSEFLANATHELRTPLNAILGFADLLVAEAYGPLGNPHYAEY 222 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQ-------SI 658 I ++ LL LV +DLA ++G ++ I + D + ++Q S+ Sbjct: 223 AHDIHTAAEHLLALVEGTMDLAKAESGQDEIELREIDIGRTVQDSIRLLRQLAEIGGVSL 282 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDN 716 + E +R++ +D +++ QI + SNA+ F+ KG TV + A D Sbjct: 283 TVSVPETPLRLR-----------SDPEKIRQIVLNLASNAIKFTPKGGCVTVDVSADSDG 331 Query: 717 GDFIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 G I +++ G I P+D+ ++ F + V + R +G GLGL + F+ + GG ++ Sbjct: 332 GACILVIRDTGIGIAPQDLATALRPFGQ-VRSPDRPHPKGTGLGLPLTRRFVEMLGGSMA 390 Query: 774 ISSSDEGVTTINCRIPS 790 I S T + R+P+ Sbjct: 391 IDSRPGHGTVVTVRLPA 407 >gi|167769698|ref|ZP_02441751.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM 17241] gi|167668059|gb|EDS12189.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM 17241] Length = 469 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 12/235 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618 E L D +KN F+ VS+ELR+PLT I G+ + L G ++ + ++ + I++ + Sbjct: 238 EELSANDRMKNDFISSVSHELRTPLTAIKGWAETLADMG-GEVDPEMLAKGMRVITSETE 296 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT----KMHENNIRIKVISD 674 L +V ++LD + + +G MKL + D++ E+ +++ HE R+ Sbjct: 297 RLAGMVEELLDFSRIQSGRMKLVKDRM---DVIAELSEAVLMFEERARHEGK-RLIYNEP 352 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + SF+ DR RL Q+F I+ NA+ +S +G TV ++A+ SV + G I E+ Sbjct: 353 DQFASFMGDRNRLRQVFVNIIDNALKYSDRGDTVTVRASVSESQVDISVADTGIGIREED 412 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RRG G+GL++ + ++LHGG + I+S + T + +P Sbjct: 413 LPKIKEKFFK--ANSTRRGSGIGLAVADEIVSLHGGTLDITSKENVGTRVTIHLP 465 >gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 614 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L N KQ +Y I S LL LVN + Sbjct: 329 KGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G ++ D + + + + +G VADR+ + Sbjct: 389 LDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGAGIGELVADRRAI 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGSSI-PEDMCK--SVFN 740 QI + SNA+ F+ G V + A R +G + SV + G I PEDM + + F Sbjct: 449 QQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGIEPEDMQRIGTPFV 508 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R +N R Q G GLGLS+V+ + LH G + + S T + R+P Sbjct: 509 RADNNYTRAQ-EGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRLP 556 >gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] Length = 762 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 9/247 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E AL E +A A+ K+ F+ ++S+E+R+P+ +IG +L+ ++L + Q Y E Sbjct: 223 EHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTEL---DEDQQMYAE 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS S + LL ++NDIL+ + ++AG ++L+ + L + +V ++ + + I + Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITL 339 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVK--NNG 727 L F D R+ Q+ + I+ NA+ F+S G I + A+ + ++ + G Sbjct: 340 RYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAKGPKGYQLGIEVLDTG 399 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IPE+ +F+ F V +A G GLGL+I ++L GG V++ S + Sbjct: 400 IGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTVKSVAGKGSVFT 459 Query: 786 CRIPSKE 792 R+P E Sbjct: 460 IRLPLTE 466 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 641 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 245 IAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVG 304 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISG 361 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L +EV + KM + + + VI DR R+ Q+ LSNA+ + +GS + Sbjct: 362 LADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ F V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 420 FGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S E +T +P+K+ Sbjct: 478 GRIEVESELEKGSTFTLYLPNKQ 500 >gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1626 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 128/241 (53%), Gaps = 10/241 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + E+ L + A+ K++F+ ++S+E+R+P+ ++G L++ + +L Sbjct: 874 IDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYT---AL 930 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q YV ++ LL L+NDILD + +DAG +KL+ + L+ ++ ++ Sbjct: 931 SVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANH 990 Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 +++ + D L ++ +AD+ RL QI + NA+ F+ G ++ L+ R + + Sbjct: 991 GNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESV 1050 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FS+ ++G I E+ + +F F RR G GLGL+I + + L GG + ++ Sbjct: 1051 TVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVT 1110 Query: 776 S 776 S Sbjct: 1111 S 1111 >gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 650 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ + S+E+R+PL IIG + LL + +L +Q+ YV + S LL+L++++L Sbjct: 134 KSRLLAMASHEIRTPLNGIIGMSGLLLDT---TLTPEQATYVRAVKTSGDALLSLIDELL 190 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D + +DAG ++L++ L L+ ++ + +A + I I D +L + D RL Sbjct: 191 DYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERLPAQVIGDAARL 250 Query: 688 LQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ + NA+ F SS G +I + +G+ +++ G I + VF F A Sbjct: 251 RQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDTGIGIAPEAQARVFREF-EQA 309 Query: 747 HRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G R G GLGLSI E ++ GG + + S TT IP Sbjct: 310 DDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIP 355 >gi|66811194|ref|XP_639305.1| histidine kinase [Dictyostelium discoideum AX4] gi|74854804|sp|Q54RP6|DHKL_DICDI RecName: Full=Hybrid signal transduction histidine kinase L gi|60467894|gb|EAL65907.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1709 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 139/271 (51%), Gaps = 13/271 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSP 583 E SI P+ + + + N T ++ + E+++ L + I+ S ++ +S+++R+P Sbjct: 786 FEASISPVLDQFQQILYYNCTKRDVTQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTP 845 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 ++NIIG DLL + SL+ Q Y+E I SS LL ++NDILD++ ++AG + ++Y Sbjct: 846 MSNIIGMADLLLDT---SLSQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYE 902 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702 + N +++V +S+A ++ + + D K+ + + RL QI + +L N++ F+ Sbjct: 903 SFDFNATVSQVVESMAQRVQSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFT 962 Query: 703 SKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 KG I D D + +K + G I ++ +F F R+ G GL Sbjct: 963 DKGEISICCLLNDETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGL 1022 Query: 757 GLSIVESFINL-HGGHVSISSSDEGVTTINC 786 GL+I + ++L G +S+ S +T C Sbjct: 1023 GLAICKELVHLAFNGEISVESQYGHGSTFTC 1053 >gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 854 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA +++A KA +K+ F+ +S+ELR+PL IIG ++++ + + + + Sbjct: 362 AERA---RDDA-EKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAVEFGDEDYIEPL 417 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + SS LLNL+N+ILD++ ++AG M+L+ + + + +L EV Q++ + + Sbjct: 418 ERVVRSSKHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKPLSFE 477 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 S +G V D R+ QIF +LSNA+ F+ G V LK + V + G + Sbjct: 478 YES-ASVGVIVGDALRIKQIFFNLLSNAVKFTESGK-VKLKVVEQSDQLQVDVIDTGLGM 535 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + +++F FV R+ G GLGL+I F + G +++ S + + R+ Sbjct: 536 SIEQTETLFQDFVQVDSSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSVFSVRL 595 Query: 789 PSK 791 P K Sbjct: 596 PVK 598 >gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 812 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PN + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ I ++T+LL L +DI+DL+ +DAG + + L Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + K+ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + V++ G I + ++VF+RF+ Q G GLGL + +S I Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782 Query: 768 HGGHVSISS 776 GGH+ + S Sbjct: 783 MGGHIGVIS 791 >gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1493 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 31/256 (12%) Query: 549 VRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++ RAL KN+AL +A K+ F+ +S+E+R+P+ +IG T LL +L Sbjct: 705 VKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL-- 762 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +Q +VE I S LL ++NDILD + +++G ++L L + L E + ++ + Sbjct: 763 -TPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGR 821 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----- 714 E + + I D + + D RL Q+ ++SNA+ F+S+G ++ +KA Sbjct: 822 ADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK 881 Query: 715 -----DNGDFI-------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 D+ DF F V++ G IP D +F F V + + G GLGL+I Sbjct: 882 DVKKSDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAI 941 Query: 761 VESFINLHGGHVSISS 776 + L G + ++S Sbjct: 942 SQRLSQLMNGKMWVAS 957 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 7/212 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K +F+ ++S+E+R+P+ +IG +LL+ + LN +Q + + SS LL+LVND+L Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEET---DLNEEQRMCTKTVVESSNALLSLVNDVL 247 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + DAG M +N + L + L +A E +I I + I D + + D+ RL Sbjct: 248 DFSKADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRL 307 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ ++ NA+ F+ G +I D + F V++ G IP ++F+ F Sbjct: 308 RQVLINLVGNAIKFTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVN 367 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+I + I L GG + ++S Sbjct: 368 SETTRRYDGAGLGLAISKKLIELMGGTLGVTS 399 >gi|86133740|ref|ZP_01052322.1| two-component system sensor histidine kinase/response regulator [Polaribacter sp. MED152] gi|85820603|gb|EAQ41750.1| two-component system sensor histidine kinase/response regulator [Polaribacter sp. MED152] Length = 507 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 17/254 (6%) Query: 552 ERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +R + EKN+ L + EI K+ F+ +S+E+R+PL I+G+T+L+ + + Sbjct: 115 KREIAEKNKELIRLREIADKANSEKSRFLAMMSHEVRNPLNVILGYTELINKEETSLM-- 172 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Y++YI+ S L +V+DILDL+ V+AG + L + ++ ++ ++K + + Sbjct: 173 -AQEYLKYITISGRNLKVIVDDILDLSRVEAGKLVLASEPMSISSIIEQIKNNYQGSHKD 231 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719 +I ++ +SD + D RL+QI + +++N++ F+ +G S +L + D Sbjct: 232 LDIELEFNVSDNLPEEVLGDDVRLIQILTNLINNSIKFTPRGTVTTSVELLFSDTDKALI 291 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F VK+ G + + +F+ + N R GVGLGLSIV+ +++ G + + S Sbjct: 292 SFKVKDTGRGMTPEQADKIFDEYQQNRLSDNRMHNGVGLGLSIVKRLVDVMEGRIKVDSL 351 Query: 778 DEGVTTINCRIPSK 791 TTI+ IP K Sbjct: 352 KNYGTTISIDIPFK 365 >gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 615 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 124/231 (53%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + +L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + + +D+G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSGENVYIHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V+I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVTIKSELGKGTEFIIKLPA 585 >gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 718 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++ R +++L+E + A+ K+ F+ ++S+ELR+PL ++G+T L+K + L Sbjct: 240 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 297 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K +Y+E I+ S LL+L+ND+LD++ +DAG + ++ E+ + K Sbjct: 298 TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 357 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718 + + + + + FV D + Q+ +L NA+ F+ +G+ I A NG Sbjct: 358 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 417 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V ++G I E+ + VF F + G GLGLSI + F+ L GG + + S Sbjct: 418 KVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 476 >gi|51891870|ref|YP_074561.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855559|dbj|BAD39717.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 584 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 116/237 (48%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E + L + F +++E R+PLT+IIGF+ LL + L Q ++++ Sbjct: 339 RQLQEAHADLEALHRSQTEFYSAMTHEFRTPLTSIIGFSQLLLSPGGDPLTPGQREHLKD 398 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ LL LVND+LD + + AG M L + + L + + E + + I + Sbjct: 399 ILESAQRLLQLVNDLLDASRLQAGQMPLRIAAVDLGEAVQEALAVVRPLAQQREITVTCH 458 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L AD R+LQI +LSNA+ F+ G V L A + SV++NG IP Sbjct: 459 IPADLPLVAADDLRVLQILLNLLSNAIKFTQVGGEVALTAEARSDLVQVSVRDNGPGIPP 518 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F F + + G GLGL++ + + LHGG + + S +T + +P Sbjct: 519 EDHEVIFQLFRRGSAHERTGGSGLGLALAKLLVELHGGRIWVESRPGCGSTFHFTLP 575 >gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium reilianum] Length = 1516 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 24/253 (9%) Query: 543 VNVTDSVRAERALTEK----------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 +++TD RAE L E A ++A IK+ F+ ++S+E+R+P+ +IG ++ Sbjct: 827 MDITDRRRAEHKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSE 886 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL + L+ +Q + E I S+ LL ++NDILD ++ G M L + LN ++ Sbjct: 887 LLCDTP---LSKEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIM 943 Query: 653 EVKQSIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708 + ++ + + + + ++ +L G V D RL Q+ + +L+NA+ F++ G+ Sbjct: 944 DTQKMLTFATQKKGLEFR--NECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAAGAITL 1001 Query: 709 -ILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 +++ D F V++ G I + K +F F RR G GLGLSI ++ Sbjct: 1002 RVIETYEDQKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKN 1061 Query: 764 FINLHGGHVSISS 776 ++L GG + + S Sbjct: 1062 LVDLMGGTIGLES 1074 >gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 646 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V VT V R ++ + R +ADE+K F+ VS+ELR+PL IIGF+D+L Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378 Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 SL+ ++S +Y I+ S LL++VN +LD++ + G + + L+ Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K + I + + VAD + Q+ ++SNA+ F+ +G V + R Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 V ++G I E + + F V + G GLGLS+V LHGG VS Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T + +P Sbjct: 559 VESAPGKGTAVTVTLP 574 >gi|167583130|ref|ZP_02376004.1| putative two-component regulatory system, sensor kinase protein [Burkholderia thailandensis TXDOH] Length = 1108 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ RAE+ L E A + K +F +S+E+R+PL++++G +L+ LG Sbjct: 468 AIADMTEHHRAEQVLREAKLTTEAAAKAKVNFFASMSHEIRTPLSSLVGNIELVA---LG 524 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q + V + S+ LL +VND+LD + +D G + L+ + +LL+ + S A Sbjct: 525 PLAPEQRERVRAMQVSAEGLLQVVNDVLDFSKIDIGELSLSEEWRSMTELLSRLAASYAL 584 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 +++ + D + + + D R+ QI + +LSNA F+ G + L+A + Sbjct: 585 LATRQGLKLYLNFDRTIPTRLHFDPVRVSQIINNLLSNAFKFTQSGK-ITLRARWTEPNL 643 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV ++G IP+ + +F F +++R Q RG GLGLSI L GH+++ S+ Sbjct: 644 EISVIDSGIGIPDALRDRLFQPFTQGDSNRLAQARGTGLGLSICARLCELMNGHIALDSA 703 Query: 778 DEGVTTINCRIP 789 T I +P Sbjct: 704 VGVGTHITVTLP 715 >gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1177 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K+ F+ ++S+ELR+PL +++ L + G+++ Q + I S T LL L Sbjct: 513 QASRYKSEFLANMSHELRTPLNSVLILARDLADNDTGNMSDDQVESARVIHESGTHLLAL 572 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682 +ND+LDL+ V+AG M L+ TI + DL+ ++ A + + +V D L S A Sbjct: 573 INDVLDLSKVEAGKMTLDPVTIAIADLVQVIRGRFAPVATDKGLGFQVEVDPDLPRSLKA 632 Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 DR ++ QI + ++SNA+ F+S+G TV L D SV + G I + VF Sbjct: 633 DRGKIEQIANNLVSNAIKFTSEGGVTVRLSLTGDGHVLALSVADTGIGIAPQDRQRVFAA 692 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F A G R G GLGL+I L GG +++ ++ + + +P Sbjct: 693 F-EQADSGTSRQFGGTGLGLTISRKLARLMGGDITLDANGDKGSVFTLLLP 742 >gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica WH47] Length = 953 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 123/261 (47%), Gaps = 30/261 (11%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++V D E++L + A+ + F+ ++S+E+R+P+ I+G D+LK Sbjct: 536 IDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLKDPD 595 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q VE I + LLN++NDILDL+ +D+G M+L + + LL EV+ + + Sbjct: 596 NI---QVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRA 652 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KA 712 E ++ +K+ DG + + D RL QI ++ NA+ F+ G IL A Sbjct: 653 SEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDGPGKRPA 712 Query: 713 ARDNGD-------------FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 D D IF + + G I PED S+F FV R G GL Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQA-SLFEPFVQADSTSTRSFGGTGL 771 Query: 757 GLSIVESFINLHGGHVSISSS 777 GL+I + GG VS+ S+ Sbjct: 772 GLAICRRLAHALGGDVSVEST 792 >gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] Length = 1032 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 5/240 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F ++T E+ L + +A+ K++F+ +S+E+R+PL +IG +LL + Sbjct: 434 LCAFTDITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANT- 492 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 SL+S+Q+ +++ IS +S +L+ L+ DILD++ ++A ++++ L +L+ + Q Sbjct: 493 --SLSSQQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLY 550 Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + I D + + + D RL QI +LSNA+ F+ +G+ I + Sbjct: 551 QGIAQQKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHRGTVTIELKRSNKN 610 Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + V + G I PE K + +++ G GLGL I I L G +S+ S Sbjct: 611 NILLRVSDTGVGISPEQQIKLFEPFYQAHSEIHAYGGTGLGLFICSKLIKLMDGQISLQS 670 >gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 389 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 19/237 (8%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K EA R K+ F+ +VS+ELR+PL +IG ++LLK S LN +Q+ Y + I + Sbjct: 30 KEEAARA----KSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQTGYADSIRVCA 82 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+++ND+LD + ++AG M + I LN+ + EV +++A E +K I +L Sbjct: 83 DTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLEL 140 Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730 +AD RL QI +LSN+ F+ +GS + G D SV + G I Sbjct: 141 NPEMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI 200 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 P++ + +F F + ++ G GLGLSI ++ I N+ G V + S TT+ Sbjct: 201 PDEQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 257 >gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1242 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 16/217 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ ++G T+LL+ ++L SKQ ++V+ + S LL +++DIL Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682 D + ++AG + L L+ LL++V + E N R K + +D Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALLEPNARRKALELVYRRADSVPQRMRG 674 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QI + +L NA+ F+ G + + D+G +F++ ++G IP D+ +F F Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVGLSASYSDDGRIVFTIADSGIGIPPDISAQLFRPF 734 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R+ G GLGL I + GG +++ S+ Sbjct: 735 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSA 771 >gi|289624367|ref|ZP_06457321.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646634|ref|ZP_06477977.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868649|gb|EGH03358.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 998 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII---GFTDLLKTSKLGSLNSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II G S S N + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAISDTHSENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + R+ Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFRL 757 Query: 789 PSKE 792 P E Sbjct: 758 PMHE 761 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1] gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1] Length = 576 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K ++++ FV +VS+ELR+P+T+I GF++ L G++N K++ ++ I S Sbjct: 342 LKKLEQMRKDFVANVSHELRTPITSIKGFSETLLD---GAMNDKETLEMFLNIILRESDR 398 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+LDL+ ++ +LN + +LL EV + K + +I + + +D + + Sbjct: 399 LQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA 458 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 V D R+ Q+F ++ NA+ ++ G V + + + + V++NG I E +F Sbjct: 459 EV-DSFRIKQVFINLIGNAITYTPAGGEVSVSLKQSDSVIVIEVRDNGIGIEESEFPRIF 517 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 RF V A G GLGL+IV+ I HGG + + S +EG T Sbjct: 518 ERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESKVNEGTT 563 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 812 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PN + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ I ++T+LL L +DI+DL+ +DAG + + L Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + K+ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + V++ G I + ++VF+RF+ Q G GLGL + +S I Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782 Query: 768 HGGHVSISS 776 GGH+ + S Sbjct: 783 MGGHIGVIS 791 >gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 470 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + N+ L + + + + F+ VS+ELR+PLT I G L++ K G S QS Sbjct: 216 RLIQAFNQTLSRLESLFTTQRRFIADVSHELRTPLTVIKGEVSLMRKMKCGDEESLQS-- 273 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + L LV ++L LA ++G + L+ + ++ +L EV Q + T E + + Sbjct: 274 ---IESEVDRLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLEVFQQMRTLAGE-KVHL 329 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++++ ++ S + DR RL Q+ I+ NA+ ++ G V L + +G +V + G Sbjct: 330 EIVTLEQV-SLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLTQTDGYARITVSDTGPG 388 Query: 730 IPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IPE+ +F RF +GQ G GLGLSI + +HGG + ++S TT Sbjct: 389 IPEEDLPYIFERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQVHGGKIDVTSVVGKGTTF 448 Query: 785 NCRIPSK 791 +P K Sbjct: 449 IIHLPLK 455 >gi|307943374|ref|ZP_07658718.1| putative sensor histidine kinase transmembrane protein [Roseibium sp. TrichSKD4] gi|307773004|gb|EFO32221.1| putative sensor histidine kinase transmembrane protein [Roseibium sp. TrichSKD4] Length = 796 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 12/257 (4%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 DS + +I P QT+L +VTD E L + ++E K+ F+ VS+E+R+ Sbjct: 239 DSPVRDAISQEPLVQTVLR--DVTDRRIIEEELLAARHSAESSNEAKSRFLATVSHEIRT 296 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+G LL+ ++L +Q Y+E + S LL L++++LD + V+AG + + Sbjct: 297 PLNGILGMAALLRDTRL---TKEQIAYIEALETSGETLLFLIDEVLDFSKVEAGKLDIQT 353 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701 + L+ L + V + +A K H ++ I D +L V D R+ QI + N + F Sbjct: 354 APTRLSSLADSVVELLAPKAHAKSLEIGTRIDPRLPETVTLDATRVRQILFNLAGNGVKF 413 Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 + G I +NG + V++ G + + +F F H R+ G G Sbjct: 414 TDTGGVSIEVDGVENGSDGSLLVIQVRDTGIGFNDAEAERLFEEFEQVDHGPARKFGGTG 473 Query: 756 LGLSIVESFINLHGGHV 772 LGL+I + L GG + Sbjct: 474 LGLAIAQRLTQLMGGQI 490 >gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis HI4320] gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response regulator domains] (capsular synthesis regulator component C) [Proteus mirabilis HI4320] Length = 942 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 132/255 (51%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+++ V+ ER+L A +A++ K+ F+ VS+ELR+PL IIG +LL++ Sbjct: 439 AICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL 498 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + N + ++ ++ + SS++LL +++DILD + +++ +K++ +++ V + Sbjct: 499 ---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISN 555 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + ++ I + + V D R+ Q+ S +L+N++ F++ G + L RD Sbjct: 556 YLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHLYRDE 614 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F + + G I E M +F F VS G GLGL+I E INL G +S+ Sbjct: 615 YYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISV 674 Query: 775 SSSDEGVTTINCRIP 789 S + + RIP Sbjct: 675 VSQENVGSRFTVRIP 689 >gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107] gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107] Length = 974 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 130/234 (55%), Gaps = 14/234 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616 + EAL +A +K+ F+ + S+E+R+PL I+GF +L LKT LN KQ +Y+E I S Sbjct: 303 RKEAL-EASRVKSEFLANTSHEIRTPLNGILGFINLALKTE----LNEKQREYMETIRDS 357 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDG 675 + LL ++N ILD + +++G + L+Y+ + + ++EV +A HE N++ I I Sbjct: 358 AQNLLTVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPC 417 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF--SVKNNGSSIP 731 + + D R Q+ S +++NA+ +S G+ + I A R +V + G + Sbjct: 418 IPRNLLGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQGIGLS 477 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT 782 ++ +++F+ F V ++ + G GLGL+I + + +HG +S+ ++G T Sbjct: 478 QEEQENLFSAFSQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGST 531 >gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 643 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 119/256 (46%), Gaps = 7/256 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V VT V R ++ + R +ADE+K F+ VS+ELR+PL IIGF+D+L Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSG 378 Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 SL+ ++S +Y I+ S LL++VN +LD++ + G + + L+ Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCC 438 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K + I + + VAD + Q+ ++SNA+ F+ +G V + R Sbjct: 439 DLMRLKADASGIALVSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 V +NG I E + + F + G GLGLS+V LHGG VS Sbjct: 499 GAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T + +P Sbjct: 559 VESAPGKGTAVTVTLP 574 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|91975926|ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5] gi|91682382|gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1201 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 175/368 (47%), Gaps = 33/368 (8%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496 G +D +EG+ +F DGRI N + +L+ + + L RNIA + ES+G Sbjct: 840 GAILDTTAEGILMFDADGRISACNRSAEALFGYDGDDLV----QRNIA---ELFAPESNG 892 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSD-------SVLEYSIIPL--------PNAQTMLT 541 A++ FD + G+ E L D V E ++PL P+ Sbjct: 893 -----AVLDYFDSVKA---GSAESLLDHGLEALGRVREGGLLPLTMTIGRTQPDGPNFFA 944 Query: 542 -FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F +++ + + E L + + +A K + +S+E+R+PL IIGF +++ + G Sbjct: 945 VFRDLSQARKIETELNQVRKLAERAAGAKADVLARLSHEIRTPLNAIIGFAEVMIEERFG 1004 Query: 601 SL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +L N + +Y++ I AS ++ +V+D+LDL+ ++ G ++L++++ LN+++ + + Sbjct: 1005 ALGNDRYGEYMKDIRASGERVIGIVSDLLDLSQIETGKLELSFTSQNLNEMVEQCVAVMQ 1064 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGD 718 + + I I+ L + VAD Q L QI ++ ++ ++ G VI+ A D G+ Sbjct: 1065 PRANRERIIIRTSLAHLLPTVVADPQALRQIVMNLIGTSIHLANAGGQVIVSTALSDFGE 1124 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + V++ G + E + F + A + G+ LS+ ++ + + I S+ Sbjct: 1125 VVLRVRDTGQRLNESEIVAALQPFNTPAPSDRSETSGVSLSLTKALVEANRAKFHIKSAP 1184 Query: 779 EGVTTINC 786 + T I Sbjct: 1185 QSGTLIEV 1192 >gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora ATCC BAA-2158] Length = 987 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E++L E + +A + K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 531 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 532 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLA 591 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + D + + D RL Q+ S +L+NA+ F+ G ++ A GD+ Sbjct: 592 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 649 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + F V+++G IP +F+ F QR +G GLGL+I E +N+ G + + S Sbjct: 650 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 709 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 710 EPGMGSQFIIRIP 722 >gi|310780117|ref|YP_003968449.1| histidine kinase [Ilyobacter polytropus DSM 2926] gi|309749440|gb|ADO84101.1| histidine kinase [Ilyobacter polytropus DSM 2926] Length = 630 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 6/235 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A+ KN F+ +S+E+R+PLT IIG++ +LK S+L ++ +E I Sbjct: 151 LKSAKEHAEAANRSKNEFLAKISHEMRTPLTPIIGYSRMLKKSELSDYTKEK---LETIH 207 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLN N++LD + ++AG ++LN+ + E+ K E NI+ ++ Sbjct: 208 NSGVKLLNFTNELLDFSKIEAGTVELNFEPFGIKKFFKEIYNEHCEKAEEKNIQFQIELP 267 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +D+ +L ++ ++ NA+ ++ KGS + RD+ F V ++G I + Sbjct: 268 QNDIIIYSDKMKLYEVVKNLVHNAIKYTKKGSVLCTVEIRDSL-LCFDVYDSGIGISDKN 326 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F Q G GLGLSI + I + G + + S TT N IP Sbjct: 327 INYIFESF--GQINKQSAGAGLGLSITKRLIEILKGDIKVESKLGIGTTFNVSIP 379 >gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] Length = 646 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V VT V R ++ + R +ADE+K F+ VS+ELR+PL IIGF+D+L Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378 Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 SL+ ++S +Y I+ S LL++VN +LD++ + G + + L+ Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K + I + + VAD + Q+ ++SNA+ F+ +G V + R Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 V ++G I E + + F V + G GLGLS+V LHGG VS Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T + +P Sbjct: 559 VESAPGKGTAVTVTLP 574 >gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15] gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15] Length = 2299 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 12/236 (5%) Query: 554 ALTEKNEALRK-ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 A+ +N L++ A + K+ F+ +VS+ELR+PL +IG ++LLK S LNS+Q+ Y + Sbjct: 1802 AIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---ILNSEQTGYADS 1858 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I + LL+++ND+LD + ++AG M + + L + + EV +++A E ++ ++ Sbjct: 1859 IRVCADTLLSIINDLLDYSKLEAGKMSVMEMPLSLTETITEVVRALAYTNAERGLKTVEQ 1918 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNG 727 + + D RL QI +LSN+ F+ KGS VI + + D SV + G Sbjct: 1919 LELNPEMMVMGDPVRLHQILMNLLSNSYKFTPKGSVTVRAVIDQETDEYADVTISVIDTG 1978 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEG 780 IP + K +F F + ++ G GLGLSI ++ I N+ G V + S D G Sbjct: 1979 IGIPAEQKKKLFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKVWLDSRDSG 2034 >gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 608 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 38/344 (11%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 H+++GV +G+I L N L + EE + N+A + SD +++ Sbjct: 271 HMTDGVIATDREGQIILMNRRAEELTGYSQEEAIGYDLVGMLNLA----HFMKLSDLYNM 326 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 I+ F+ + L +LE +S+I N + + D ER E Sbjct: 327 DDPILLDFEHHDEEL----------ILEANFSVIEKENGRKNGLIAVLHDVTEQERIEQE 376 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISA 615 + E FV +VS+ELR+PLT++ + + L G++N Q+++ S Sbjct: 377 RRE-----------FVANVSHELRTPLTSMKSYLEALLD---GAVNDSDVAPQFLQVTSN 422 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 + ++ LVND+L L+ +DA + + + + ++++ V + NI+ + + D Sbjct: 423 ETDRMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPD 482 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L S + DR +L+Q+ ++SNA+ +S +G + + ++ I SVK+ G IP++ Sbjct: 483 VPL-SVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKERLIVSVKDEGVGIPKEN 541 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF+RF V A G GLGL+I + + +HGGH+ +SS Sbjct: 542 LPHVFDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSS 585 >gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1209 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K++F+ +S+E+R+P+ IIG +L L Sbjct: 690 WIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 748 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L + V + + + Sbjct: 749 LGTMPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 808 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E + +++ S G + D RL Q+ +L NA+ F+ +G+ V+ L D+ + Sbjct: 809 AREKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPES 868 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 869 TRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVELMRGD 925 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 926 ISLHSEPGKGTLVTIDLP 943 >gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1083 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 12/250 (4%) Query: 536 AQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 A+ + +F+N + ER L EA A+ K+ F+ ++S+E+R+PL I+GF + Sbjct: 412 AEELCSFINNLEEKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSI 471 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ + L+S Q Y+E I SS LL ++NDILD++ ++AG M++ + ++ Sbjct: 472 LEKT---DLDSTQQDYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIES 528 Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 K E + + ++ + + S V D ++ QI S ++SNA+ F+ G I Sbjct: 529 TIFLYDAKAREKGLELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVS 588 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +K F +++ G + E+ +F F R+ G GLGL+I + + Sbjct: 589 VIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVE 648 Query: 767 LHGGHVSISS 776 + GG +S+ S Sbjct: 649 MMGGTISVKS 658 >gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans CB1190] gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans CB1190] Length = 1025 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 10/215 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+P+ +IG T+LL + SL +Q Y I+ S+ LL ++ND+L Sbjct: 378 KSAFLANMSHEIRTPMNAVIGMTELLSAT---SLTEEQQDYTGVIAQSADGLLTVINDVL 434 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG ++L+ +++ + +A + + + +DG + V D RL Sbjct: 435 DFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLELVAAADGVPPAAVFGDPGRL 494 Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743 QI ++ NA+ F+ +G V+ L A R + D +V + G IP + +F F Sbjct: 495 RQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRSFS 554 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL I L GG V ++S Sbjct: 555 QVDESATRRHGGTGLGLVISRRLAELMGGTVEVAS 589 >gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1139 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 142/283 (50%), Gaps = 14/283 (4%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKA 565 ++R L T + ++ +E ++P+ +L F+ ++++ +E L E Sbjct: 454 NKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELG 513 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +++K+ F+ +S+E+RSPL I+G +LL SKL N +Q + + + LLN +N Sbjct: 514 NKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL---NKEQRIHANITREAGSALLNTIN 570 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 DILD + ++AG M L + + L+ +V Q + K ++ +++ D + + + DR Sbjct: 571 DILDFSKIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDR 630 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740 QRL Q+ ++ NA+ FS G+ + DN + V ++G I E+ +F Sbjct: 631 QRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFK 690 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 F V + H +G GLGL+I I + GG + + S D+G Sbjct: 691 EFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKG 733 >gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 919 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 16/247 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R E L+ A +K+ F+ +S+E+R+PL +IGF DLL ++ L Sbjct: 353 DVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVIGFADLLLATE---LT 409 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q QYV + LL ++ DILD + ++AG ++L L+ LL + + ++ Sbjct: 410 PEQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDLHRLLRDCRDLMSNAAS 469 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + +++ G + FV D R+ QI ++ NA+ F+ +GS ++ Sbjct: 470 QKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTERGSVLVSVGLLTGPGEGGG 529 Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 FSV + G IP ++F RF RR G GLGL I + + L G Sbjct: 530 EGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLVELMRG 589 Query: 771 HVSISSS 777 H+ + SS Sbjct: 590 HIGVQSS 596 >gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 509 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLNLVNDIL 628 F+ +VS+ELR+PL IIG++++L + Q+ ++ I S LL L+NDIL Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ ++ G M L+ T +LL + SI ++ E N +++ L + D + Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV--- 743 QIF+ +LSNA F++ G +L + G +V++ G + ED VF FV Sbjct: 395 QIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQAD 454 Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 ++A+ G G GLGL+I + L GG + + S +T +PS Sbjct: 455 ASTSANYG---GTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLPS 500 >gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106] gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106] Length = 663 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 143/276 (51%), Gaps = 30/276 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD+ A+ L + EA A++ K+ F+ +S+ELR+PL IIG++DLL+ Sbjct: 372 DITDNKLAQIELQQAKEAAEAANQAKSEFLASMSHELRTPLNAIIGYSDLLREDAEDYGY 431 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +E I +S LL+L+ DILD++ +++G M L + L+NEV+ I ++ Sbjct: 432 TDFVPDLEQIKSSGLHLLSLIQDILDISKLESGEMNLYLEHFDIATLINEVQAIIQPLVN 491 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG- 717 +N + K+ +GS ADR ++ Q +LSNA F+ +G TV LK R NG Sbjct: 492 QNQNQFKIDCVQPIGSMYADRTKVKQALLNLLSNAAKFTKEG-TVTLKVTRTLFPLQNGQ 550 Query: 718 --------------------DFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754 D++ FSV++ G + + + +F+ FV N+ Q G Sbjct: 551 THSDPKSINHSHHSEKRLSEDWVTFSVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYGGT 610 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 GLGLSI + F + G +++ S+ + +T + ++P+ Sbjct: 611 GLGLSISQRFCEMMMGKITVESTIKVGSTFSIKLPA 646 >gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] Length = 1126 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 37/336 (11%) Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517 ++ P R W E R+S G + + +T D D + SF ++S++ Sbjct: 372 ITAPLLRLTWAAE--RVSAGDLDQEMIST--------DRKDEIGRLAVSFARMQRSIREK 421 Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHV 576 ++L+ D + + A A + KN L AD++K+ F+ Sbjct: 422 IQLIKDQ---------------------NEELEANLATIQLKNNELEAADKLKDEFLATT 460 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL ++G + L T G +++ +E I S L +LVND+LD + G Sbjct: 461 SHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIIINSGQRLTSLVNDLLDYHKMRHG 520 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 + +N L+ + V + + +IRI D L D QRL Q+ ++ Sbjct: 521 NLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQVDKSLPVVFVDEQRLEQVLYNLIG 580 Query: 697 NAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRG 753 NA+ ++S+G VI + D F+ V + G IP D + +F + H R+G Sbjct: 581 NAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPADELEHIFEPLIQAGHDSNRYRQG 638 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLSI I L GG + +SS T + +P Sbjct: 639 SGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674 >gi|46201466|ref|ZP_00054984.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 372 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 534 PNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 P A + F+ + D A+R L KN L ++ E +N + +++LR+PL I GF + Sbjct: 104 PTAVGLDDFIRLNNDLTNAQRDLASKNAELARSVEWRNLILGMAAHDLRNPLNTIGGFAE 163 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL+ +L +++ +++I +S +L ++ D LD + ++ G L + + L Sbjct: 164 LLQERIGETLPVMEARALDHIRQASGYMLRIIEDFLDFSRIETGHFTLESEPVDILSLAI 223 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 EV + I + E+ + ++V + + ADR RL Q+ S ++ NA+ F+ GS V + Sbjct: 224 EVAERITSFADEHAVSVQVKAPAPIPIVPADRNRLAQVLSNLIGNAVKFAPNGSIVTVSI 283 Query: 713 A-RDNGDFI-FSVKNNGSSIP---EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + D + V++ G IP D F+R + + G+ G GLGL+I +S I+ Sbjct: 284 VFHEPSDTVSVRVQDQGPGIPALERDKLFRPFSRTSAQSVTGE-PGTGLGLAICKSVIDA 342 Query: 768 HGGHVSISSS 777 HGG + + + Sbjct: 343 HGGKIGLDGT 352 >gi|320160794|ref|YP_004174018.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994647|dbj|BAJ63418.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 414 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 4/231 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA K ++ F+ +++ELR+PL I G+T L S Q ++++ I + Sbjct: 171 EAQSKESRVQEDFISTITHELRTPLGFIKGYTTTLLRSDTEWDPQMQQEFLKIIDQETDR 230 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+ ++LD A + +G +K+ + + L+ L+ + + +MH + +D L Sbjct: 231 LQELIENLLDSARLQSGTLKMIFQPVRLDSLVRSTIEHL--RMHHPTFTAHLETDTPLSP 288 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +R+ Q+ + NA+ ++ GS V +K +G+ +++++G IP+ VF Sbjct: 289 IEADPKRINQVLENLFHNAIKYAP-GSDVWVKIKEQDGEITLTIEDHGPGIPQRYLPFVF 347 Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF N G GLGL I + I H G++ ++S TT R+P Sbjct: 348 ERFFRNPDASPNIHGTGLGLFICKKIIQAHHGNIQVNSIQGKGTTFIIRLP 398 >gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 869 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + G + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727 + + D RL Q+ + +++NA F+S G I D+ G V++ G Sbjct: 748 RMPESDKIYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I E+ + +F RF + Q G GLGLSI ++ I G +S++S T R Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863 Query: 788 IPS 790 +P+ Sbjct: 864 LPN 866 >gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] Length = 646 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T V VT V R ++ + R +ADE+K F+ VS+ELR+PL IIGF+D+L Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378 Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 SL+ ++S +Y I+ S LL++VN +LD++ + G + + L+ Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K + I + + VAD + Q+ ++SNA+ F+ +G V + R Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 V ++G I E + + F V + G GLGLS+V LHGG VS Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558 Query: 774 ISSSDEGVTTINCRIP 789 + S+ T + +P Sbjct: 559 VESAPGKGTAVTVTLP 574 >gi|114762251|ref|ZP_01441719.1| hypothetical protein 1100011001331_R2601_14970 [Pelagibaca bermudensis HTCC2601] gi|114545275|gb|EAU48278.1| hypothetical protein R2601_14970 [Roseovarius sp. HTCC2601] Length = 497 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/345 (22%), Positives = 141/345 (40%), Gaps = 14/345 (4%) Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265 +W + A + W+N + G A L + + ++ + L + C Sbjct: 153 IWMTNSAHVVTWSNTFFDDLRAQAGAAPGSA---PFSLHPDPAQPLRVTRTRLGGDGCAP 209 Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAID--VSKEITVNDQLTHTYEILHNLTVAIAIFD 323 S E + RV + + ID ++ E T L I +L +A+A+FD Sbjct: 210 ASWYE------VQSCRVSDGWLHYAQNIDPVIAAETTQRTFLQTLTRIFAHLPIALAVFD 263 Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-- 381 + R L N + ++L ++ FL P+ + LR LPE ++++W++ + V Sbjct: 264 KERRLVLFNPALLDLTQLPADFLTGRPNLLSFFDMLRDRQVLPEPRDYRSWRDKLGEVIA 323 Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441 SS+ + +TW LP+G T + +P GG ++FE+++ +V L + ++ +D Sbjct: 324 AASSDHYVETWSLPSGATYRMTGRPHPDGGIAFLFEDISAEVSLTRHFRQELETSQSVLD 383 Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 L E +AVF G++ N +R +W ++ I+ + S W Sbjct: 384 SLEEAIAVFSRTGKLAFCNAPYREMWGSDPEESPADLGIKEATRHWQAAFRPSPIWGDLR 443 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546 +T + +R L L PLP TM+ F + Sbjct: 444 EFVT-LERDRAPWDAELHDHDGQPLRCLAEPLPGGATMVRFCQLP 487 >gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 699 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 16/274 (5%) Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584 ++ P+ + ++ V V R ER L E A K F+ +S+E+R+PL Sbjct: 171 TVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPL 230 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T ++G DLL ++L +S+Q QYV A+ LL+L+N ILDL+ ++AG +++ Sbjct: 231 TAVLGMADLLDKTRL---DSQQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVE 287 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703 L+ L+ + + + + + + S V D R+ Q+ ++ NA+ F+ Sbjct: 288 FDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTE 347 Query: 704 KGSTVI----LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 +G ++ L AA F +V + G IP + +F F RR G G Sbjct: 348 EGRVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTG 407 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL+I + + GG +S+ S + G +T IP Sbjct: 408 LGLAISRKLVTMMGGQISLVSREGGGSTFTMEIP 441 >gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 1821 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1323 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1382 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1383 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1442 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1443 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1502 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1503 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1562 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1563 LLGGEIHAASEPGRGSTFTLYLP 1585 >gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 917 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 19/251 (7%) Query: 546 TDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 T +R E+ E +A A+ + K+ F+ H+S+ELR+PL I+GFT L+ Sbjct: 418 TLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLEN 477 Query: 603 NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 N + + ++ I S LL L+ND+LD++ ++AG + LN + L LL+ +++ + Sbjct: 478 NHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFS 537 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + +++ + L ++ +D Q+L Q+ ++ NA+ F+ GS + D + Sbjct: 538 IRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPN 597 Query: 719 FI-----------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766 I F+V++ G I +F F+ + R ++G GLGL I + F+ Sbjct: 598 QIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQ 657 Query: 767 LHGGHVSISSS 777 L GG +S+SS+ Sbjct: 658 LMGGDISVSST 668 >gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 1809 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1313 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1372 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1373 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1432 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1433 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1492 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1493 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1552 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1553 LLGGEIHAASEPGRGSTFTLYLP 1575 >gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] Length = 812 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 34/260 (13%) Query: 542 FVNVTDSV---RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFT 591 F+++TD + ++ LTE+ +ALR A ++ K F+ +S+E+R+P+ I G T Sbjct: 257 FIDITDITELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMT 316 Query: 592 DLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 T ++N +Q + +E I++SS L+ L+ND+LD++ +DAG MK+ + T L + Sbjct: 317 ----TIAAANINDRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQN 372 Query: 650 LLNEVKQSIATKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + + I + ++ V I+D L D RL Q+ +LSNA+ F+ +G Sbjct: 373 VTESITAIIYPQADAKGLKFSVPLVDITDTVL---TGDALRLNQVLINLLSNALKFTPEG 429 Query: 706 STVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 V L KA R F+V + G + ++ K +F F + R G GL Sbjct: 430 GAVRLEIRQLQKKAGRVR--LRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGL 487 Query: 757 GLSIVESFINLHGGHVSISS 776 G+ I ++ + L GG VS+ S Sbjct: 488 GMPITKNLVTLMGGTVSVRS 507 >gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 2001 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 14/244 (5%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E E EA +KA+ + K+ F+ ++S+ELR+PL I+G+ +LK +L S Q Sbjct: 1527 RVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTPLNGILGYAQILKRD--SNLTSFQ 1584 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +Q ++ I S LL L+NDILDL+ ++A M++ I L+ V I + + N Sbjct: 1585 TQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYPKGIHFPSFLDSVAGIIKMRAVDKN 1644 Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721 I K D +L AD +RL Q+ +L NA+ F+ +G ++ + F Sbjct: 1645 ILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKFTDRGQVTFRVNAIQTEANQAQIRF 1704 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778 + + G I + +F F + + R + G GLGL+I + + L G + +SS+ Sbjct: 1705 EIVDTGVGITPEQATKIFQPFEQIGDIER-RAEGTGLGLAITQQLVELMGSELKVSSTVG 1763 Query: 779 EGVT 782 EG T Sbjct: 1764 EGST 1767 >gi|94313180|ref|YP_586389.1| periplasmic sensor signal transduction histidine kinase [Cupriavidus metallidurans CH34] gi|93357032|gb|ABF11120.1| periplasmic sensor signal transduction histidine kinase; putative exported protein [Cupriavidus metallidurans CH34] Length = 681 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +A + K+SF+ +S+E+R+PL I+G +L++ S L +++Q + V Sbjct: 416 ALAQARDAAEASARTKSSFLAMMSHEIRTPLQGILGLLELVEYSPL---SAEQRRQVRLA 472 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671 S + L +++D+LD A +DAG ++L + + L L V +A + ++++ V Sbjct: 473 SEAGQALRQILDDVLDYAKMDAGRLRLALAPLDLRGLFANVLSLLAPRAQAKGLQLQQWV 532 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 D + VAD RL QI ++ NA+ F+ GS +L + + SV + G Sbjct: 533 QPDVPV-QLVADGARLRQILLNLVGNAIKFTECGSVDLLASVEPTSAGEDVLVVSVADTG 591 Query: 728 SSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 I PED+ + +F FV RR G GLGL+I L GG + + S+ T + Sbjct: 592 IGIAPEDIAR-LFTPFVQGESGPARRFDGTGLGLAISRQLAQLMGGELMLDSTLGVGTQV 650 Query: 785 NCRIP 789 R+P Sbjct: 651 MLRVP 655 >gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1278 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ + E+ + + A+ K+ F+ ++S+ELR+P+ I+GF LL+ LN Sbjct: 882 DISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGFGQLLEIE--AGLN 939 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q+ YV+ I + LL L+N++LDLA +++G + L+ + +L+ E I Sbjct: 940 EDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKPIAQ 999 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +R I+D +G +V ADR RL Q+ +LSNA+ ++ V+++ A +G Sbjct: 1000 ---VRGITINDAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVLVQVAVQDGFVRL 1056 Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP + +F F G G+GL+I + + GG + + S + Sbjct: 1057 EVSDTGYGIPATRRQELFQPFSRLGVEDADIEGTGIGLTISRRLMKMMGGAIGMDSEEGR 1116 Query: 781 VTTINCRIP 789 T +P Sbjct: 1117 GCTFWIELP 1125 >gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 967 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 15/249 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T+ R E AL + + A++ K+ F+ ++S+E+R+P+ I+G L ++L S Sbjct: 573 FTDMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHL---ARLKS 629 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + QY++ S+ LL +VND+LDL+ ++AG ++L + L + + Sbjct: 630 ADPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVEPLLVA 689 Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDN 716 E + + ++D + D RL Q+ + ++ NA+ F+ KG + A + Sbjct: 690 AGEKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGKGRIEVRVALAAGAAEP 749 Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGH 771 G +F+V++ G IP +F F S+AH G GLGL+I + + L GG Sbjct: 750 GTRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAH-ALYGGTGLGLTISKRLVELMGGE 808 Query: 772 VSISSSDEG 780 + I+ S EG Sbjct: 809 I-IAESREG 816 >gi|271967362|ref|YP_003341558.1| multi-sensor signal transduction histidine kinase [Streptosporangium roseum DSM 43021] gi|270510537|gb|ACZ88815.1| multi-sensor signal transduction histidine kinase [Streptosporangium roseum DSM 43021] Length = 360 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 167/362 (46%), Gaps = 37/362 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D L +G+ V DG + N A L ++ + G H+R++ + + + DG D Sbjct: 19 VDDLPDGLVVTDRDGHVLAVNRAATRLTGVTRDQAA-GRHLRDVFS-----FRDHDGRDW 72 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----- 554 + + T +S Q L L + P Q ML + R ER Sbjct: 73 WKWLDTYGGLPTRSRQPELPLRT-----------PGGQEMLVAARLVR--RPERGGEVVR 119 Query: 555 --LTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +T ++ R + + + V V++ELRSPLT++ GFT L ++++ +E Sbjct: 120 VVITLRDAGARARLERSRADLVSTVAHELRSPLTSVKGFTATLLAKWTRFTDNQKLVMLE 179 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRI 669 ++A + + L+ ++LD++ +++G ++++ + D+ ++ IA ++ E R Sbjct: 180 TVNADADRVTRLITELLDVSRIESGRLEIHRQVV---DIPARARKIIAGRVAAGEPEDRF 236 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ DG+L D+ ++ Q+ + ++ NA+ TV + + SV++ G Sbjct: 237 RLEVDGELPETWLDQDKIDQVLANLMENAVRHGR--GTVTIAIEPNEWGVTVSVRDQGEG 294 Query: 730 IPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP ++ VF +F NA R R G GLGL IV+ I HGG +S+ EG + Sbjct: 295 IPPELATRVFRQFWRGNARR--RGGTGLGLFIVKGLIEAHGGTISVQRGPEGGAEFRFMV 352 Query: 789 PS 790 P+ Sbjct: 353 PT 354 >gi|227537041|ref|ZP_03967090.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243133|gb|EEI93148.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 437 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 IIP+ + ++ +V + ++ + +K K+ F+ S+EL++PLT+I Sbjct: 185 IIPIREQEVIVKWVGTFTDIDDQKQIEKK----------KDEFLSIASHELKTPLTSIKA 234 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 + LL+ + +S S+Y+ + + L +L+ D+LD++ +D G +K+N + Sbjct: 235 YIQLLERTLNAEHSSSTSKYLNTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFEN 294 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL+ V +I +NIRI+ D + D R+ Q+ L+NA+ +S VI Sbjct: 295 LLSNVVDTIYHTHENSNIRIEREGDAIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVI 354 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768 +K ++N V + G IPE K++FN+F + +G+G+GL I I H Sbjct: 355 IKTEQENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQH 414 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G I S +T IP Sbjct: 415 NGTFGIQSQTGQGSTFYFTIP 435 >gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] Length = 1084 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 132/245 (53%), Gaps = 19/245 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASS 617 E A+ K++F+ ++S+++R+P+ IIGFT L L +++ + Y+ ASS Sbjct: 565 EKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL----ALSNIDDTDRVKDYLGKTLASS 620 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 LL+L+ND+LD++ +++G + L + L+D+L+++K ++ +++ + + + + D Sbjct: 621 NHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDVMDVT 680 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSI 730 D+ RL QI +LSNA+ F+ G TV ++ R G + F +K+NG + Sbjct: 681 DEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQYEFRIKDNGIGM 740 Query: 731 PEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 ++ + +F F S R Q G GLG++I ++ +++ GG + + ++ T Sbjct: 741 SQEFAQKIFEPFERERTSTVSRIQ--GTGLGMAITKNIVDMMGGTIEVQTAQGKGTEFTV 798 Query: 787 RIPSK 791 +P + Sbjct: 799 CVPMR 803 >gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 684 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 27/251 (10%) Query: 550 RAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNIIGFT 591 +AE+ LT+ NE L K A++ K+ F+ ++S+ELR+PL I+G+ Sbjct: 173 QAEQELTQFNEVLEKRVEERTFELQAAKLEADRANQAKSEFLANMSHELRTPLNGILGYA 232 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +L SK +L+++ V I S + LL+L+ND+LDLA ++AG ++L +T L LL Sbjct: 233 QILSRSK--TLSAEDKNGVGVILDSGSHLLSLINDVLDLAKIEAGKLELFPTTTSLPSLL 290 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708 V K + ++ +AD + L Q+ ++ NA+ F+ G+ Sbjct: 291 QRVVDICQIKATQKGLQFLYKPSQLPEGILADEKLLSQVLINLIGNAIKFTDAGTVTFQI 350 Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + K + +F V + G I E+ +F F V + H+ Q G GLGL+I + + Sbjct: 351 EVHKGSDGQVSLMFKVIDTGRGIAEEDIDKLFEAFEQVGDHHK-QSEGTGLGLAISQRIV 409 Query: 766 NLHGGHVSISS 776 L GG + I+S Sbjct: 410 QLMGGTIHINS 420 >gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 1630 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 33/364 (9%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF--------RSLWKTEENRLSPG 477 E +Y +V+ Q E I F PD + N A+ ++ T+ ++L P Sbjct: 1226 EARYRGVVEDQTELI-------CRFLPDTTLTFVNHAYCRHLGIQREAIIGTKFSKLIPE 1278 Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLP 534 +++ A + N+ D ++ I + + + Q + ++D +LE + Sbjct: 1279 VARKDVLAHLQQLINQKDSMIVYEHPIETANGHKGWQQWSDRAITDDAGRILEIQAVGR- 1337 Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 ++T+ +AE L E EA A+ K++F+ ++S+ELR+PL I+G+ ++ Sbjct: 1338 ---------DITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPLNGILGYAQIM 1388 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 N ++ + I S LL L+NDILDL+ ++AG ++L + N + + Sbjct: 1389 GRDSHLCENYREG--IGIIERSGNYLLTLINDILDLSKIEAGKIELYPTDFYFNQFIQAI 1446 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + + +I L V AD +RL QI +L NA+ F+ +G ++LK Sbjct: 1447 TEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFTKQGG-IVLKVG 1505 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHV 772 + F V++ G I + ++F+ F+ + R G GLGLSI + +++ GG + Sbjct: 1506 LEKEKIRFQVEDTGIGIATEDLDNIFSPFLQVGNPNYRAEGTGLGLSITQKLVDMMGGEL 1565 Query: 773 SISS 776 + S Sbjct: 1566 HVES 1569 >gi|150395255|ref|YP_001325722.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150026770|gb|ABR58887.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 739 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 163/367 (44%), Gaps = 54/367 (14%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDG 496 D + + V V PDG++ +N AF L + R TC+ R+ + D Sbjct: 118 DAMGDLVIVRDPDGKVMQANVAFHELCGCADAR----------GLTCAELGLRFEPKPDP 167 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-AL 555 + F I TS GT + ++ + + +A L ++ V + A Sbjct: 168 YRYFVHICTS--------AGT------RLYDWHDVLVRDAHGRLMRHSIARDVTEDMLAA 213 Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +++ EA ++A+E K+ + VS+E+R+PL+ I+G + LL ++ L+ +Q Y+ Sbjct: 214 SQREEARQRAEEASRAKSRLLATVSHEIRTPLSGILGMSRLLAETR---LSDEQKNYLVG 270 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L+ LV D++D +++ AG +L S L + V + ++ + HE I I Sbjct: 271 MQQSGHTLVQLVEDLIDFSSLAAGRFQLRPSQQDLRQTVENVVEMLSPRAHEKGIEI--- 327 Query: 673 SDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 G+ VA D RL Q+ ++ NA+ F+ KG VI+ +NG V Sbjct: 328 -----GATVAIEIPERMLFDAARLRQVLFNVVGNAVKFTEKGG-VIVSVDIENGSLRIRV 381 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G + D VF F QR +G GLGL+I + GG ++ +S + Sbjct: 382 DDSGPGMSADALARVFEEFEQAGDEAQRAKGTGLGLAISRRIMEAFGGSLTATSVSGKGS 441 Query: 783 TINCRIP 789 R P Sbjct: 442 RFEIRFP 448 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 16/243 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++T + E L++ E +A + K+ F+ ++S+E+R+PL+ ++G T+L + + Sbjct: 446 SHTDMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTEL---AMMN 502 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L + ++++ S LL ++ND+LDL+ ++AG L L +L + +S+A Sbjct: 503 ELTPEVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAV 562 Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 +RI + S + D RL QI + ++ NA+ F+ +G TV + D D Sbjct: 563 SAKAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTERG-TVTVSMTADAVDA 621 Query: 720 IFS-------VKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHG 769 VK+ G IPE M + +F F V++AH G GLGL+I + + + G Sbjct: 622 PAGKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAH-ATYGGTGLGLTISKELVEMMG 680 Query: 770 GHV 772 G + Sbjct: 681 GRI 683 >gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 856 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P + + +VTD ER+L + +A +A+ K+ F+ ++S+E+R+P+T+I+G+ DL Sbjct: 426 PPLYVVASGFDVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADL 485 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + + ++ +V I + LL L+NDILDL+ ++A M++ ++ L L+ + Sbjct: 486 ISQKQ---IDEDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIED 542 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V + + + E ++ I+V GK+ + AD +RL QI ++ NA+ F+ G + Sbjct: 543 VLRIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVR 602 Query: 713 ARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 A F V + G I ++ K +F F R G GLGL I + + + Sbjct: 603 AEQIDLRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAM 662 Query: 768 HGGHVSISS 776 GG ++ S Sbjct: 663 LGGEITARS 671 >gi|297838281|ref|XP_002887022.1| hypothetical protein ARALYDRAFT_475737 [Arabidopsis lyrata subsp. lyrata] gi|297332863|gb|EFH63281.1| hypothetical protein ARALYDRAFT_475737 [Arabidopsis lyrata subsp. lyrata] Length = 738 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 492 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 550 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570 >gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] Length = 987 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E++L E + +A + K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 531 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 532 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 591 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + D + + D RL Q+ S +L+NA+ F+ G ++ A GD+ Sbjct: 592 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 649 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + F V+++G IP +F+ F QR +G GLGL+I E +N+ G + + S Sbjct: 650 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 709 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 710 EPGMGSQFIIRIP 722 >gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 865 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P + + +VTD ER+L + +A +A+ K+ F+ ++S+E+R+P+T+I+G+ DL Sbjct: 435 PPLYVVASGFDVTDRYEFERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADL 494 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + + ++ +V I + LL L+NDILDL+ ++A M++ ++ L L+ + Sbjct: 495 ISQKQ---IDEDTRSHVATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIED 551 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V + + E ++ I+V GK+ + AD +RL QI ++ NA+ F+ G + Sbjct: 552 VLSIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVR 611 Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 A + F V + G I ++ K +F F R G GLGL I + + + Sbjct: 612 AEQSDRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAM 671 Query: 768 HGGHVSISS 776 GG ++ S Sbjct: 672 LGGEITARS 680 >gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 629 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E L + E ++D +K++F+ ++S+E+R+PL IIGF+ LL + + Sbjct: 379 DITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYME----D 434 Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K+ + Y+ I+ ++ +LLN++N++LDL+ ++AG M+L L++L++E + + Sbjct: 435 AKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNV 494 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + +K D R+ QI S +LSNA+ +++G + +G I S Sbjct: 495 PE-GVTLKKRYPASPCLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKI-S 552 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781 V + G IP++ +F RF Q G GLGLSI +S I G + ++S EG Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKADSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGS 610 Query: 782 T---TINCRI 788 T T CRI Sbjct: 611 TFTVTFPCRI 620 >gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1494 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 31/256 (12%) Query: 549 VRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++ RAL KN+AL +A K+ F+ +S+E+R+P+ +IG T LL +L Sbjct: 705 VKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL-- 762 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +Q +VE I S LL ++NDILD + +++G ++L L + L E + ++ + Sbjct: 763 -TPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGR 821 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----- 714 E + + I D + + D RL Q+ ++SNA+ F+S+G ++ +KA Sbjct: 822 AAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK 881 Query: 715 -----DNGDFI-------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 D+ DF F V++ G IP D +F F V + + G GLGL+I Sbjct: 882 DVKKFDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAI 941 Query: 761 VESFINLHGGHVSISS 776 + L G + ++S Sbjct: 942 SQRLSQLMNGKMWVAS 957 >gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1038 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 26/241 (10%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K+EA A++ K+ F+ ++S+E+R+P+ +IG T LL + L ++Q +VE I +S Sbjct: 280 KHEA-EAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPL---EAQQQDFVETIRSSG 335 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676 LL L+NDILD + ++AG + L + + E +A+K E N+ + +I+ Sbjct: 336 DALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINPPT 395 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARD--------NG 717 + + D RL Q+ +L+NA+ F+ +G V+ L A D Sbjct: 396 PTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAESDLEVIAEATPY 455 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G IP D + +F F R+ G GLGL+I + L GG + +S Sbjct: 456 EIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVS 515 Query: 776 S 776 S Sbjct: 516 S 516 >gi|325523296|gb|EGD01650.1| putative two-component regulatory system, sensor kinase protein [Burkholderia sp. TJI49] Length = 778 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 23/344 (6%) Query: 456 IKLSNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513 I ++NP R++ + EN+L PG I + +++DG +F T +R Sbjct: 86 IIVANPIARTVMGLRITENQL-PGELIGAFEKSLQGVQSDADGSRIFQFPFTLSRPKRPP 144 Query: 514 LQGTLELLSDSVLEYSIIPLP-NAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKN 570 L +E + P N Q + +++T +AE L E A + K Sbjct: 145 LH----------IEITYAPAKLNKQDVFFCAVIDMTSHHQAEILLREAKLTSDAAAKAKV 194 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 +F +S+E+R+PL++++G +L+ G L +Q V+ + S+ LL +VND+LD Sbjct: 195 AFFASMSHEIRTPLSSLVGNIELVAR---GPLAPEQQARVQAMQTSARGLLQIVNDVLDF 251 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689 + +D G + L + +LL ++ QS A + + + D + S + D R+ Q Sbjct: 252 SKIDVGELSLMEEWCSVVELLEKLAQSHAPLAVQQGLMFYTVFDRDIPSRLLFDPIRVSQ 311 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHR 748 I + +LSNA+ F+ G ++L+A+ G + SV ++G IPE++ + +F F +++R Sbjct: 312 IVNNLLSNALKFTPSGK-IVLRASWGGGVLVLSVTDSGIGIPEELKQRLFVPFSQGDSNR 370 Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 Q RG GLGLSI L G + + S+ T I +P K Sbjct: 371 LAQARGTGLGLSICARLCELMKGRIRLDSAVGVGTRITVELPLK 414 >gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 768 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L +K + + +++ +K++F+ ++S+E+R+PL I+GF++LL + + + + ++ E Sbjct: 533 EQELRDKAK-VEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEFCE 588 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ +LL LVNDILDL+ ++AG M YS ++ L + Q+ +++ + Sbjct: 589 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCE 648 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I + + +++ RL Q+ + L+NA F+ +GS + R++G + F VK+ G I Sbjct: 649 IPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKGIE 706 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TINCR 787 VF RF Q G GLGLSI ++ + NLHG S +G T TI C Sbjct: 707 RKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVDSEEGKGSTFWFTIPCA 764 Query: 788 I 788 + Sbjct: 765 V 765 >gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1084 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 17/246 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T KN A A+ K+ F+ H+S+ELR+PL I+GF+ LL + +L+ +Q +Y++ I+ Sbjct: 606 TAKNTA-ESANRAKSDFLAHMSHELRTPLNAILGFSQLLNNDE--NLDEEQKEYIDIINQ 662 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S LL L+ +LD+A ++AG + L+Y + L+ L+ + K NI + V Sbjct: 663 SGEHLLTLIKSVLDMAKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQCKNIDLTVDIGN 722 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKN 725 + S + D +L Q+ +L+NA+ F+ +G VIL + F +++ Sbjct: 723 DVPSLIMGDEGKLRQVLINLLNNAIKFTEEGK-VILSIKKSQQQQEKSSQIIPLRFEIED 781 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + +F F GQ+ G GLGL+I F++L GG + +S +G T Sbjct: 782 TGPGIDIEEAPRLFQPFFQTK-LGQKTQEGTGLGLTISYEFVHLMGGTLQVSCPIKGGTI 840 Query: 784 INCRIP 789 +P Sbjct: 841 FYFTLP 846 >gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1248 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 128/248 (51%), Gaps = 17/248 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL + ++A K+ F+ ++S+E+R+PL ++GF DLL + +L++ Q QY++ Sbjct: 728 KALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLLLQT---NLDATQKQYLDI 784 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S S LL ++NDILD + ++AG M+L + L + + ++ + + + + + + Sbjct: 785 VSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDGLRDLMIYQTKQKGLEMILS 844 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNN 726 G L + D RL Q+ + +LSNA+ F+SKG+ T++ K + F VK+ Sbjct: 845 LAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSKGTIEFKVTMLQKESNQKALLRFLVKDT 904 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT- 783 G I + + +F F+ +R G GLGLSI + L + + S+ +T Sbjct: 905 GVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRLLALMDSRLCLESTHGKGSTF 964 Query: 784 -----INC 786 +NC Sbjct: 965 YFDIWVNC 972 >gi|91778586|ref|YP_553794.1| signal transduction histidine kinase (STHK) with CheB and CheR activity [Burkholderia xenovorans LB400] gi|91691246|gb|ABE34444.1| signal transduction histidine kinase (STHK) with CheB and CheR activity [Burkholderia xenovorans LB400] Length = 1303 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 12/238 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD + L E+ E L +AD KN F+ + +ELR+PL + DLL + S+++ Sbjct: 914 LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---SVDA 970 Query: 605 KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660 +Q + V I + LVN++LDL + +G +KLN + L ++ EV + I Sbjct: 971 RQKVWAVGVIQRQGQAMTQLVNEMLDLTRIASGSIKLNRQAVTLETVVQSALEVCRPIVE 1030 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + H + + + + + L D RL Q+ I+ NA ++ G + L A R Sbjct: 1031 ERH-HTLSVALPEEPVL--MFVDPTRLSQVIENIVINAAKYTEPGGKIDLSATRTGRRLS 1087 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++NG+ I M ++F+ FV H G+G+GLS+V + LHGG V S Sbjct: 1088 LRVRDNGAGIAPSMLNTLFDMFVQGPLPHGQLHNGLGVGLSVVRRLVELHGGTVEAVS 1145 >gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 718 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++ R +++L+E + A+ K+ F+ ++S+ELR+PL ++G+T L+K + L Sbjct: 240 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 297 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K +Y+E I+ S LL+L+ND+LD++ +DAG + ++ E+ + K Sbjct: 298 TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 357 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718 + + + + + FV D + Q+ +L NA+ F+ +G+ I A NG Sbjct: 358 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 417 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V ++G I E+ + VF F + G GLGLSI + F+ L GG + + S Sbjct: 418 KVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 476 >gi|225574442|ref|ZP_03783052.1| hypothetical protein RUMHYD_02511 [Blautia hydrogenotrophica DSM 10507] gi|225038327|gb|EEG48573.1| hypothetical protein RUMHYD_02511 [Blautia hydrogenotrophica DSM 10507] Length = 347 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 15/238 (6%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +A + A++ KN + ++++++R+PLT +IG+ LL+ + + + ++Y + Sbjct: 115 KQAAKMAEDKKNDLIMYLAHDIRTPLTTVIGYLSLLEEAPDMPVEQR-TKYTGIALEKAE 173 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISD 674 L L+N++ ++ + A + L + +L L +E I+ K N++R+++ Sbjct: 174 RLERLINELFEITRLHARTVALKKEKLDLYCLLVQLADEFYPIISAK--GNSLRLEI--K 229 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 K+ F AD ++L+++FS IL NA+ +S T IL A GDF+ ++N G IP++ Sbjct: 230 EKMTVF-ADAEKLVRVFSNILKNAVSYSYP-DTEILITADVQGDFVNVDIQNQGDQIPQE 287 Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F+ A G GLGLSI E I LHGG +++ S+E + T + R+P Sbjct: 288 RLGDIFEKFIRLDKARLSDTGGTGLGLSIAEEIIRLHGGEITV-ESEEKMVTFHVRLP 344 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG +++ Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 775 SSSDEG 780 S+EG Sbjct: 817 -HSEEG 821 >gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1016 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 139/281 (49%), Gaps = 20/281 (7%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 SF+ ++++QG L + I L A + + +T ++ AL + + A Sbjct: 478 SFEVWKQTIQGC-------SLPWKKIELDAALELRNILMLTALQSSQLALEQVAQRAEIA 530 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++ K+ F+ ++S+E+R+P+ I+GF DLL+ +Q Y+E I+AS LL+L+N Sbjct: 531 NQAKSEFLANMSHEIRTPMNAILGFCDLLQGL---VTEPRQRSYLELIAASGESLLDLIN 587 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADR 684 DILDL+ ++AG +L Y + L L+ EV++ + E + I I D D Sbjct: 588 DILDLSKIEAGKFQLYYEPLNLRQLIAEVQKIFTHRAKEKGLSLISHIDDAVPQGIYFDG 647 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------FSVKNNGSSIPEDMCKS 737 RL QI +L NA+ F+ +G I ++A + I ++ + G I ++ Sbjct: 648 IRLRQILFNVLGNAIKFTERGFIQISIRAQVYTQENIKKVWLEIAITDTGIGIAKNQQDD 707 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F FV + + R+ G GLGL+I L GG + + S Sbjct: 708 IFEAFVQSEGQSTRKYGGTGLGLAITRRLTTLLGGTLVLQS 748 >gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 569 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%) Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 ++ E A R A++ K+ F+ +S+ELR+PL II T+ + G LNS+Q Y Sbjct: 191 SVQEAKSAQRLAEQANLRKSQFLATMSHELRTPLNAIINMTEFIDW--FGPLNSQQKSYQ 248 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + + LL+L+NDILDL+ ++AG ++L + + D+ EV +++ ++I Sbjct: 249 DQVRGAGEHLLHLINDILDLSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIA 308 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSS 729 G AD + + QI +LSNA+ F+ G V L+ + + SV + G Sbjct: 309 YHHADGTGLAWADSKAIKQIVLNLLSNAIKFTETGQIRVALEFSATTVN--ISVHDTGIG 366 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + + ++ F + +A + G GLG+SI + ++LHGG++++ S T Sbjct: 367 IAREQQQFIWESFRQIQSADDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVC 426 Query: 788 IPSK 791 +P+K Sbjct: 427 LPTK 430 >gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia pyrifoliae Ep1/96] gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96] gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC [Erwinia pyrifoliae DSM 12163] Length = 992 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E++L E + +A + K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 540 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 541 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 600 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D + + D RL Q+ S +L+NA+ F+ G ++ A GD+ Sbjct: 601 MVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 658 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + F V+++G IP +F+ F QR +G GLGL+I E +N+ G + + S Sbjct: 659 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 718 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 719 EPGMGSQFIVRIP 731 >gi|170077056|ref|YP_001733694.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002] gi|169884725|gb|ACA98438.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002] Length = 553 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 21/246 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + ++A +A +KN F+ + ++ELR+PL IIGF L+ L + +++ +++ Sbjct: 284 QELEQLHQAATEAARLKNDFLANTTHELRTPLNGIIGFLTLV----LDEMADGRAEELDF 339 Query: 613 ISA---SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I+A S+ LLNL+NDILD+A +++G + L+ I L +LL+ + ++ N+ Sbjct: 340 IAAAHESALHLLNLINDILDIAKIESGKLDLDLQPISLGELLDNLNNFARPQLQTKNLTW 399 Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFI- 720 +++ + D QRL Q+ ++ NA+ F++ G V D+ F Sbjct: 400 EILVPESHDDIILYGDYQRLFQVLLNLVGNAIKFTNAGGITINVELVFKPVIHDDQQFPG 459 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 SV + G + DM +F F V H + G GLGL+I + + GG +S Sbjct: 460 MVKISVIDTGIGVALDMQSKLFQNFSQVRGGHTRKYGGTGLGLAISKKLVEACGGKISFY 519 Query: 776 SSDEGV 781 S EG+ Sbjct: 520 SMGEGL 525 >gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1056 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 151/275 (54%), Gaps = 28/275 (10%) Query: 524 SVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKN---EALRK----ADEIKNSFVQH 575 ++L +I + + Q +L+ N +T+ + E L +N E RK A++ K++F+ + Sbjct: 542 ALLSADLIEINSEQYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTFLAN 601 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+ELR+PL I+GF+ L+ + + SK+ +E I+ S LL+L+NDILDL+ ++ Sbjct: 602 MSHELRTPLNAILGFSQLMAQNPIFVSASKE---LEIINRSGEHLLSLINDILDLSKIEV 658 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFV-ADRQRLLQIFSK 693 G + L LL+ +++ + KM N I++IS+ ++ ++ D +L Q+ Sbjct: 659 GKVVLEEKPFDFYILLDTLEEML--KMRANAKGIQLISERDQIPQYIKTDENKLRQVLIN 716 Query: 694 ILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRF 742 ++ NA+ F+++GS + L+ + D F V++ G+ I + +F+ F Sbjct: 717 LIGNAIKFTNQGS-ITLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFDAF 775 Query: 743 V-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V ++A + ++G GLGLSI F+ L GG +S+ S Sbjct: 776 VQTSAGKQSQQGTGLGLSISRKFVQLMGGKISVKS 810 >gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 535 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + +A K+ F+ +S+E+R+P+ ++G + LL T+ L Q + V I Sbjct: 283 LVEARQQATEASRAKSRFLATMSHEVRTPMNGVLGMSALLATT---DLEPSQREMVNLIE 339 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S LL ++NDILDLA +++G ++ T +L+ V K E + + + I Sbjct: 340 GSGQALLTILNDILDLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEID 399 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSS 729 V D R+ QI S +LSNA+ FS +G ++ + A D F V + G Sbjct: 400 PVAEREVVGDPARVRQILSNLLSNAVKFSDRGEVRVRCLMTQTADRAHDVTFEVGDTGIG 459 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + D+ +F F QR+ G GLGL+I + L GG +++ S+ + + Sbjct: 460 MDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFTVK 519 Query: 788 IPS 790 +P+ Sbjct: 520 LPA 522 >gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 631 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 14/239 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615 +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Y + I++ Sbjct: 242 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHTTYKGLSVIAS 296 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVIS 673 S+ L++D+LDL+++ G ++L ++ L + + E Q +A + + +++ V Sbjct: 297 SARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLHVPP 356 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + D RL Q+ +LSNA+ F+ + + RD+G + SV ++G I + Sbjct: 357 TPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 414 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 +F RF Q G+GLGL+IV+ + +HGG V +S G T R+P Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473 >gi|229084116|ref|ZP_04216405.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44] gi|228699152|gb|EEL51848.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44] Length = 453 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 24/242 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR +++++ FV +VS+E +SPL++I GF+ L+T+ L S+Q+ Y+E I + S + Sbjct: 217 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNNLTK--SEQTHYLEIIESESRRMS 274 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---------KQSIATKMHENNIRIKVI 672 +L +L LA++D + L + L + ++ K+ +A +M NI+I Sbjct: 275 SLCKQLLLLASLDKEDLTLRKRSFDLGKQIKDIIFMLEWEWRKKELAVEMDVPNIQI--- 331 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D L Q++ + +N++ F+ G T+ +A ++ S+ + G IPE Sbjct: 332 --------YGDENLLYQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPE 383 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + K +F+RF V A G GLGLSIV+ I+LH G +++ S TT + + Sbjct: 384 NEIKKIFDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTTFSIYLQK 443 Query: 791 KE 792 ++ Sbjct: 444 QQ 445 >gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 569 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 120/255 (47%), Gaps = 22/255 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L E + +K+ F+ S+ELR+PL +IGF L+ + +Q ++++ Sbjct: 307 KELELAREQAEEVSRLKSEFLASTSHELRTPLNGMIGFLKLI-LEGMADDPEEQREFIQE 365 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN----IR 668 S+ LLN++NDILD+A ++AG M+L +S + L L N+V A + H N + Sbjct: 366 AHNSALHLLNIINDILDIAKIEAGKMELEFSPVELEYLFNKVYDFTAQQAHHKNLSFTLE 425 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGD 718 I + DG + + QRLLQ+ ++ NA+ F+ +G I + G Sbjct: 426 IPAVYDGIV--MYGNYQRLLQVMLNLVGNAIKFTDEGGITISAEVIRKKVHFQGQEFPGH 483 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSIS 775 V + G + D +F F S H G R G GLGL+I + + GG V Sbjct: 484 VKVRVADTGIGVSLDKQDKLFQSF-SQVHGGLNRPYGGTGLGLAISQKLVETMGGVVHFF 542 Query: 776 SSDEGV-TTINCRIP 789 S E + +T+ +P Sbjct: 543 SMGENLGSTVTFTVP 557 >gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 559 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 32/290 (11%) Query: 513 SLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRK 564 +Q ++EL + + + ++ P+ NA + V +VT + R ER L EA Sbjct: 103 GVQKSIELYNPEIRAFRSITVFPVHNAAGEVVMVAEYVRDVTATRRMERELRVAKEAAEA 162 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD+ K+ F+ +S+E+R+P+ ++G DL ++ L+ +Q Y+E S+ LL L+ Sbjct: 163 ADKAKSEFLASMSHEIRTPMNGVLGMLDLALDTR---LDDEQRDYLEAAQNSAESLLALI 219 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RI-KVISDGKLGS 679 NDILD + ++AG+++L+ L L+ + + E + RI + + DG Sbjct: 220 NDILDFSKIEAGMVELDSQAFRLRKRLSTLHTMFVHRAEEKGLAFGFRIGEEVPDG---- 275 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD----NGDFI---FSVKNNGSS 729 V D RL Q+ +L NA+ F+ +G V L AA+ G+ I FSV ++G Sbjct: 276 LVGDPMRLRQVLVNLLDNAIKFTEQGRVYLDVQLDAAQGALPAEGEPILLRFSVTDSGPG 335 Query: 730 IPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777 I E + +F RFV ++ +R RG GLGL+I + L GG +++ S+ Sbjct: 336 ILESHREHIFERFVQADGSLSRRHRGTGLGLAICKRLATLMGGDITVESA 385 >gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 467 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 166/363 (45%), Gaps = 44/363 (12%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 + +S+GV GR+ L NP L++ I SR N Sbjct: 125 LSSMSDGVIAMDAWGRMILINPVVEELFR--------------ITMAASRGKN------- 163 Query: 500 FAAIITSFDDER---------KSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDS 548 +I ++D E+ + +Q +++L+ V + +IPL N+ V Sbjct: 164 ILRVIRNYDLEKLLNQALETGRCMQKQIQILAPEPRVFQVHVIPLQNSGAERGGV----- 218 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V R +TE+ + E+++ FV +VS+ELR+PLT+I GF + L L ++ + + Sbjct: 219 VALLRDITER----KILQEMRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTAR-R 273 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++E I++ + L L++++L+L+ +++ + + +L+ + + E N+ Sbjct: 274 FLEIINSETERLSRLIDELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLA 333 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 IK+ L D L Q+ ++ NA+ ++ G V + AA + VK+NG Sbjct: 334 IKINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAATQDEMKVDVKDNGI 393 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + VF RF V A ++ G GLGLSIV+ I+ H G V + S +T + Sbjct: 394 GIPPESLSRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSF 453 Query: 787 RIP 789 IP Sbjct: 454 VIP 456 >gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 867 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 130/262 (49%), Gaps = 17/262 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++TD RA+ L + +A++ K +F+ H +E+R+PLT I+GFT++L +LG Sbjct: 282 IDLTDLRRAQAELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLH-ERLGH- 339 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + ++ +E I ++ + L L+ND LDL+ +++G ++L ++I +L EV + Sbjct: 340 DPQSAEALEAIQSAGSHLKMLLNDFLDLSKIESGKLELAPTSIDPWELAVEVATINQGQA 399 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-- 718 IR+ V ++ V D RL Q+ ++ NA+ FS G T+ L + N Sbjct: 400 QAKGIRLGVEANASTPLLVHVDTTRLRQVLFNLVGNAIKFSQGGDVTISLIGSEPNASDS 459 Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767 ++ V++ G + D +F F +N G GLGL I +S + L Sbjct: 460 DTDGRSTLVWQVRDQGPGMTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVEL 519 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + + S TT+ +P Sbjct: 520 MGGTIQVVSHPGRGTTVQFELP 541 >gi|169335858|ref|ZP_02863051.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM 17244] gi|169258596|gb|EDS72562.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM 17244] Length = 968 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 137/242 (56%), Gaps = 16/242 (6%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLN 603 ++ +R+E+ L + A R A+E K+ F+ +S+++R+PL IIG + + LK K S+ Sbjct: 435 SERIRSEQLLKDALNAARTANEAKSDFLSRMSHDIRTPLNAIIGMSTIGKLKIEKPNSVL 494 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+ I +SS LL+L+NDILD++ +++G + LN +++++E+ + I + Sbjct: 495 DCFSK----IDSSSKYLLSLINDILDMSKIESGKVTLNDERFDFSEMIHEINEIIYDQAV 550 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDF 719 E I KV SD + ++ADR +L QIF +LSN++ + SKG + + R+ G Sbjct: 551 EKGIEYKVYSDINMDKYYIADRLKLNQIFMNLLSNSLKYFSKGDFIHFSFKEVKRERGVS 610 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 + F V+++G + + +F F + G R G GLGL+IV++ +++ G++ + Sbjct: 611 LIEFIVEDSGCGMSKGFLDKLFLPF-EQENAGVARNNVGTGLGLTIVKNIVDIMEGNIEV 669 Query: 775 SS 776 S Sbjct: 670 IS 671 >gi|120603378|ref|YP_967778.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120563607|gb|ABM29351.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 831 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 ++ + A+ +K++F+ ++S+++R+PLT IIG DLL+ G ++S Y+ + Sbjct: 236 ISSRQAMAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAP--GCPPERRSAYIAQLK 293 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL +VNDI D + +++G ++L L + ++E + + + I Sbjct: 294 GASANLLEIVNDITDYSCLESGRLRLTPRPFALRNAVDECLGLFRFTCEQKGLTLTADIP 353 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSVKNNGSS 729 G + D RL Q ++SNA+ F+ +G + VI + R D + F+V++ G Sbjct: 354 PGLPDALTGDDFRLRQALGNLVSNAVKFTRRGTITVVIREEERSTEDVMLRFTVQDTGVG 413 Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP ++F FV AH + G GLGL+I + GG + S Sbjct: 414 IPRHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHS 462 >gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase [Arthrospira platensis str. Paraca] Length = 812 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 19/251 (7%) Query: 546 TDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 T +R E+ E +A A+ + K+ F+ H+S+ELR+PL I+GFT L+ Sbjct: 418 TLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLEN 477 Query: 603 NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 N + + ++ I S LL L+ND+LD++ ++AG + LN + L LL+ +++ + Sbjct: 478 NHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFS 537 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + +++ + L ++ +D Q+L Q+ ++ NA+ F+ GS + D + Sbjct: 538 IRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPN 597 Query: 719 FI-----------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766 I F+V++ G I +F F+ + R ++G GLGL I + F+ Sbjct: 598 QIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQ 657 Query: 767 LHGGHVSISSS 777 L GG +S+SS+ Sbjct: 658 LMGGDISVSST 668 >gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 907 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 11/252 (4%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + R RAL E A R A E K +F+ +S+++R+P+ I+G L+ + L S + Sbjct: 375 EQARQRRALEEAYHAARVASEAKTNFLSSMSHDIRTPMNAIMGMA-LIAQTNLAS-PERV 432 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + ++ IS SS LL+L+N+ILD++ +++G + L + L +L+ V + E Sbjct: 433 ADCLDKISVSSRHLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMCQPLLREKG 492 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDNGDF 719 + V S + + V D RL Q+ +LSNA+ ++ +G TV + + G + Sbjct: 493 LEFHVSASQVRHENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELPTGIKKRGQY 552 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V++NG +P +F F + + +G GLG++I E+ + + G +++ S Sbjct: 553 EFVVEDNGIGMPAAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMMNGTITVESE 612 Query: 778 DEGVTTINCRIP 789 E + +P Sbjct: 613 PEKGSRFTVSLP 624 >gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 878 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 7/251 (2%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIG 589 P T +N+ + ++ TE+ + R KA++ K F+ +S+ELR+PL I+G Sbjct: 468 PFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAILG 527 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F LL+ + L+ +Q + VE I+ S LL L+N++LDLA +++G ++++ ++ +D Sbjct: 528 FAQLLQNGRQ-PLSERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPMLAHD 586 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 ++ + Q + + I + + F D R+ QI +L NA+ ++ G V Sbjct: 587 VIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPGGAV 646 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINL 767 ++ G V + G IP +F F A G G G+GL++ ++L Sbjct: 647 EVRCEAVGGRCRIGVVDTGIGIPASRLGELFQPFNRLGAESGSIEGTGVGLALTRKLVDL 706 Query: 768 HGGHVSISSSD 778 G + + S + Sbjct: 707 MHGELGVHSRE 717 >gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] Length = 1126 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 5/235 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KN L AD++K+ F+ S+ELR+PL ++G + L T G +++ +E I S Sbjct: 442 KNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIIINSG 501 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L +LVND+LD + G + +N L+ + V + + +IRI D L Sbjct: 502 QRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQVDKSL 561 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 D QRL Q+ ++ NA+ ++S+G VI + D F+ V + G IP D + Sbjct: 562 PVVFVDEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPADELE 619 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F + H R+G GLGLSI I L GG + +SS T + +P Sbjct: 620 HIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674 >gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 797 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 9/244 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ L +K EA A+ K+ F+ ++S+ELR+PL IIGF++L+ G L S +Y+ Sbjct: 517 AEKYLEQKAEA-ETANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGS--PRYL 573 Query: 611 EY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL +++D+LD++ ++AG ++L + ++ ++++ + E I Sbjct: 574 DYCNDIRQSGQYLLGVISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEI 633 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + + + S ADR + +I +L NA+ F+ V ++ G V++ G Sbjct: 634 TLLAETTPQT-SVHADRGAIEKILLILLRNAIKFTPAQGRVTVRTRMIQGALNIYVEDTG 692 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP + F + + +G GLGL+I S ++LHGG + I S+ T + Sbjct: 693 MGIPPAPLARLGRPFEQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVL 752 Query: 786 CRIP 789 RIP Sbjct: 753 VRIP 756 >gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 508 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 529 SIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 S PL NA M+ V + + A +AL ++ E FV +S++L++P+T I Sbjct: 229 SAAPLANAAGEMIGSVEIIRDISALKALEQERE----------DFVSMLSHDLKTPITAI 278 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG DL+K +LG +N +QS Y++ S ++++++ +LD+ +AG M L Sbjct: 279 IGSIDLVKEGRLGPVNPEQSMYLDAAVESCAEMVDMIDTLLDVHRFEAGRMVTTLVEEEL 338 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 LL + + + + G +F+ DR++ ++ +LSNA+ F+++G Sbjct: 339 GPLLQRTVGRFEPVARHSGLELTLSLPGAPVTFLVDRKQFGRLLGNLLSNALKFTTEGGI 398 Query: 708 VIL----------------------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 + + R+ + SV + G+ IP D ++F+RFV Sbjct: 399 EVRAELPENAAAAAQGITPGAYPTERLPREGRYLLVSVSDTGAGIPADSLVTIFDRFVQA 458 Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 +R G+ G GLGL+ ++ H G + + S D G T Sbjct: 459 RNRKMGKSSGTGLGLAFCRKVMDAHHGFIWAESEPDRGST 498 >gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 917 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1042 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 127/255 (49%), Gaps = 7/255 (2%) Query: 526 LEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +E S+ P+ ++T ++T S R + L E EA KA K+ F+ +S+ELR+P Sbjct: 548 VEISVTPILGGPKLVTATVRDITASKRTQEELHEAKEAAEKASRAKSEFLASMSHELRTP 607 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L +++G+ LL+ + L+ +Q + + I S L L+ +ILD+A ++AG + + Sbjct: 608 LNSVLGYAQLLRCEE--ELSQRQRKALNVIQQSGEHLQRLIEEILDMAKIEAGTLDIVAE 665 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702 + L+ +L+ + + ++ + + + V AD +RL Q+ +L NA+ ++ Sbjct: 666 NVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPAVVSADERRLCQVLMNLLDNAIKYT 725 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIV 761 G V+L+ F V++ G I + +F+ F G GLGL+I Sbjct: 726 RHGE-VVLRTMMHERAVCFVVEDTGLGIRPEHLSEIFDVFHQVRDPSMTVEGTGLGLAIS 784 Query: 762 ESFINLHGGHVSISS 776 + ++L GG + ++S Sbjct: 785 KRLVHLMGGELQVAS 799 >gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 890 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 16/250 (6%) Query: 542 FVNVTDSVRA----ERALTEKNEAL--RKADEI----KNSFVQHVSYELRSPLTNIIGFT 591 V V +VR E+A K +AL ++A E+ K+ F+ ++S+E+R+P+T I+G++ Sbjct: 343 LVQVGTAVRNAQLFEQARQAKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYS 402 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 + L+ S L +++Q+++ I S LL ++NDILDL+ ++A +++ + I L +L+ Sbjct: 403 ESLRESNLS--REERNQFIDIIVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLI 460 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709 +++ I + HE + + + L + F +D RL QI + +NA F+ KGS Sbjct: 461 EDLRSHIGMRAHEKGLTLDITPKLPLPAHFESDPTRLKQILFNLGANATKFTHKGSIHFG 520 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + +D F+V + G + K +F FV R+ G GLGL I ++ Sbjct: 521 VSYEKDTNLLRFTVTDTGIGLGPGELKKIFEPFVQADSSTTRQYGGTGLGLYISRQLAHM 580 Query: 768 HGGHVSISSS 777 GG +++ SS Sbjct: 581 LGGELTVDSS 590 >gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii] Length = 706 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L+ + Y+ I S+ Sbjct: 71 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTIEKSA 126 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL ++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 127 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 186 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730 L + V D RL QI + ++SNA+ F+ +G T++ +A D+ SV++ G + Sbjct: 187 PL-AVVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 244 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 245 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 293 >gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 917 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|326386781|ref|ZP_08208402.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208834|gb|EGD59630.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 1135 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 8/239 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L EA A+ K+ ++ VS+E+RSPL +I G+ L++ + ++ Sbjct: 671 RELHRAKEAAESANAAKSRYLLAVSHEIRSPLNSIYGYAQLMERGH----DIAPAEAARI 726 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I SS L NLV +LD++ V++G+++++ T+ L L+++ + I Sbjct: 727 IRRSSEHLTNLVEGLLDISHVESGVLRISNDTVRLQPFLDQIASMFVPQAQAKGIAFDYR 786 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 G + ++V D++RL QI +LSNA+ F+ GS A R F++ + G I Sbjct: 787 CTGHIPTYVRTDQKRLRQILINLLSNAIKFTQAGSVRFTVAFRPE-LATFTIADTGIGIA 845 Query: 732 EDMCKSVFNRFVSNAH-RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + + +F F +H QR RG+GLGL+I + +++ GG + + S T R+ Sbjct: 846 AEDRERIFAPFERGSHPEAQRQRGIGLGLAITAALVHILGGDIQVESVPGKGATFTVRL 904 >gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] Length = 931 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L EK + L + + K+ F+ ++S+ELR+PL +I+ +++L L +Q ++ Sbjct: 502 AKEELEEKAKQLSLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPDQMLTEEQKEFS 561 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I S LL L+NDILDL+ V+ G +++++ + + ++ + Q N+ Sbjct: 562 KVIHTSGQDLLTLINDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEFT 621 Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------- 720 V S ++ F D QRL QI +LSNA F+ +GS + DF Sbjct: 622 VSSSEEVPPVFHTDEQRLQQIVKNLLSNAFKFTEEGSVAVTFEKAAQSDFFGLPLSAYTD 681 Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +V + G IP + + +F F R+ G GLGLSI + F L GG + Sbjct: 682 DWLKITVLDTGIGIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICKV 741 Query: 775 SSSDEGVTTINCRIP 789 S + + IP Sbjct: 742 ESEEGKGSRFTLVIP 756 >gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 602 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K F+ VS+ELR+PL IIGF+D+L G+ + +Q +YV + S LL +V I Sbjct: 345 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 404 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ +++G + + + + + NI ++ G ADR+ + Sbjct: 405 LDVSRIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAV 464 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI ++SNA+ F+ G V++ A R F V++ G I E+ ++ F+ + Sbjct: 465 QQILINLVSNAVKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFMQIQN 524 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGLS+V+ + LH G +SI S TT+ +P Sbjct: 525 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 568 >gi|254521023|ref|ZP_05133078.1| response regulator receiver domain protein [Stenotrophomonas sp. SKA14] gi|219718614|gb|EED37139.1| response regulator receiver domain protein [Stenotrophomonas sp. SKA14] Length = 1019 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 L + + +R ++E+ K+ F+ ++S+ELR+PL + + LL +K G+L +Q + Sbjct: 327 LVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTDEQVK 386 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I +S+ LL L+NDILDL+ ++AG ++L +V++ ++ ++++ + + Sbjct: 387 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVVQRLRETFEPMARQKGLA 446 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ +D S VAD QRL QI +L+NA+ F+ G + A +G F V + G Sbjct: 447 LQIEADALAPSQLVADSQRLQQILKNLLANALKFTEHGKVSLHVRAAGSGRIRFEVADTG 506 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + + +F F +RR G GLGLSI GG + + S Sbjct: 507 IGIAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIHVDS 557 >gi|115372093|ref|ZP_01459404.1| TodK [Stigmatella aurantiaca DW4/3-1] gi|115370795|gb|EAU69719.1| TodK [Stigmatella aurantiaca DW4/3-1] Length = 668 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 9/235 (3%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E R+ E + V V ++LR+PL+ I LL KLG + + +V IS ++ Sbjct: 427 QEEEARQMAEFQEKLVAIVGHDLRNPLSAIQVSAALL-ARKLGEPSLLRKLHV--ISTAA 483 Query: 618 TILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 ++ D+LDL G + + L+ ++ EV + E +IR+ + + Sbjct: 484 DRAGHITRDLLDLTQARLGGGIPVRPQPCELHAVIREVAEEHHAAHPERDIRLDLAGTAE 543 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D +RL Q+ + +LSNA+++S G+ V + + R + + N G IPE+M Sbjct: 544 ---GVWDPERLAQVVANLLSNALNYSPPGTPVEISSQRHEEELVLRFHNQGPPIPEEMRS 600 Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F R G R G+GLGL I E ++ HGGH+ + S++ TT +P Sbjct: 601 RLFAPFKRRPERSAGPRDGLGLGLYIAERIVSAHGGHIGVDSTELQGTTFFVHLP 655 >gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 733 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 10/222 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +A +IK +F+ ++S+E+R+PL +I+GFT+LL+ + ++++E I + L+ Sbjct: 232 LTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRR---DKDPDSAEFIESIQKAGENLM 288 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++NDILDL+ ++AG+M++ + + L++ ++ +++E +++ ++ + Sbjct: 289 AIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFKERVNEKGLQLNCSVASNVPDTL 348 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI ++ NA+ FS G +L A N VK+ G I + Sbjct: 349 IGDATRLTQILVNLIGNALKFSDGGMIEVLVSRVWADGSNIQLGVKVKDTGIGISNEKLD 408 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF R G GLGLSIV++ I L GG++ + S Sbjct: 409 KIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGNIEVHS 450 >gi|189466762|ref|ZP_03015547.1| hypothetical protein BACINT_03138 [Bacteroides intestinalis DSM 17393] gi|189435026|gb|EDV04011.1| hypothetical protein BACINT_03138 [Bacteroides intestinalis DSM 17393] Length = 704 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 16/234 (6%) Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L EKNE L ++D +K+ F+Q++S+E+R+PL I+GF+ +L T + +++ Sbjct: 457 LQEKNEELTVARDHAEESDRMKSFFIQNMSHEIRTPLNAIVGFSQVLSTPDMEVDEEEKA 516 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I +S +L L+ND+LDLA++++G ++ + N+L + ++A+ +H N Sbjct: 517 EFSMLIQQNSELLTTLINDVLDLASLESGKYTMHLAPHRCNEL---CQIAMASVVHRNPK 573 Query: 668 RIK--VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSV 723 +K SD FV D++RL Q+ L+NA + +G + + +N G FSV Sbjct: 574 EVKSYFTSDAPNDFLFVTDKERLQQVLINFLTNAEKHTVRGEIHLHCSLTENPGKITFSV 633 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G +P D VF+RF Q G GLGL+I G V + S Sbjct: 634 TDTGPGVPADQADYVFDRFSKLDEFKQ--GTGLGLNICSIIAGRLKGEVKLDKS 685 >gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] Length = 648 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 126/223 (56%), Gaps = 15/223 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLN 622 A+ K F+ ++S+++R+P+ IIGFT L T +++K+ Y++ IS SS LL+ Sbjct: 135 ANRAKREFLFNMSHDIRTPMNAIIGFTSLAATH----VDNKEQVLDYLKKISTSSQHLLS 190 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681 L+ND+LD++ +++G +K+ + L DL+++++ I + + + + + D + Sbjct: 191 LINDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISSKRLSLFIDTMDVVDEDII 250 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMC 735 D RL Q+ ILSNA+ F+ G V ++ A + G++ F +K+NG I ++ Sbjct: 251 TDPLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCGNYEFRIKDNGIGINKEFQ 310 Query: 736 KSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K +F F ++ +G GLGLSI ++ ++L GG +++ S Sbjct: 311 KHIFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLES 353 >gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 935 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 21/269 (7%) Query: 538 TMLTF-VNVTDSVRAERALTEKN-EALRKA-------DEIKNSFVQHVSYELRSPLTNII 588 ++LTF V V + A AL + E LR+A ++ K+ F+ +S+E+R+P+ II Sbjct: 262 SVLTFAVMVAKQILAGSALLQAMVEDLRQAKTGADAANQAKSEFLATMSHEIRTPMNGII 321 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G T LL ++L Q+ + + S+ LL ++NDILD + ++AG ++ ++ L Sbjct: 322 GMTSLLLDTRL---ERDQAHFANTVRVSAESLLTIINDILDFSKMEAGKLEFEETSFELV 378 Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 L+ V + ++ + N+ + I G F D RL Q+ + NA+ F+++G Sbjct: 379 PLIEGVVDILGPRLRDKNLDLSCFIPPAAHGVFRGDAGRLRQVLLNLAGNAVKFTNQGG- 437 Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 V+L+ D+ D F++ + G IPE +F F RR G GLGL+I Sbjct: 438 VVLEVMVDDSDPARALLRFTITDTGIGIPEAAKGKLFGTFTQAEASTARRFGGSGLGLAI 497 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 + + + GG + SS+ +T ++P Sbjct: 498 CKRIVTMMGGDIGFDSSEGKGSTFWFQVP 526 >gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1840 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1342 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1401 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1402 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1461 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1462 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1521 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1522 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1581 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1582 LLGGEIHAASEPGRGSTFTLYLP 1604 >gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080] gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080] Length = 1448 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 6/218 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+PL IIG +LL + +QS++ S LL+L+++IL Sbjct: 842 KSEFLAVMSHEIRTPLHGIIGMNELLLKT---DTTPQQSRFARAALNSGKTLLHLISEIL 898 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 DLA ++A M + L +++EV +++ I D L GS+ D Q++ Sbjct: 899 DLAKIEADRMDIESVEFDLVSVIDEVCYLQGEPAQRKGLKLDFIPDAALAGSYRGDPQKI 958 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI + ++ NA+ F+ G + +GD V + G IP+D VF +F Sbjct: 959 RQIITNLVGNAIKFTESGRITVALGVDASGDVRMVVDDTGDGIPDDARTRVFEKFTQADT 1018 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 R+ G GLGL+I +F + GG +SI + G T Sbjct: 1019 STTRQYGGTGLGLTICRNFAEVMGGSLSIETPTPGTGT 1056 >gi|266620347|ref|ZP_06113282.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium hathewayi DSM 13479] gi|288868059|gb|EFD00358.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium hathewayi DSM 13479] Length = 446 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 569 KNSFVQHVSYELRSPL-------TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +N F+ S+ELRSPL T I + + KQ+QY++ I A + + Sbjct: 210 QNEFIAAASHELRSPLAVIESSVTAIAAAEESSAAPRSAECMEKQTQYLKNIRAECSRMA 269 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 LV D+L LA+ DAG + T+ ++ LL E + + IR+ + + + L Sbjct: 270 ALVGDMLLLASTDAGSWSVKRETVDMDTLLIETYELYEPVCRSSGIRLFLDLPEETLPHI 329 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL Q+ + +L NA+ ++ + + + AA + + SV + G IP + +F+ Sbjct: 330 TGDSFRLKQLLTILLDNAVSYTPEDRGITISAAANGNELTISVADQGCGIPPEARAHIFD 389 Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF ++ R +R GLGLSI + LHGG +S+ ++ G T ++P Sbjct: 390 RFYRGDSSRTDKRHFGLGLSIAKELAVLHGGRISVGETEGGGATFWIKLP 439 >gi|182680138|ref|YP_001834284.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636021|gb|ACB96795.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 647 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F +S+E+R+P+ I+G T+LL + L +Q YVE I S + L +L + +L Sbjct: 114 KTEFFAKISHEIRTPINGILGLTELLLAT---GLTPEQKNYVEAIRGSGSALASLTDALL 170 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + ++AG M L ++ L+ V + +A K + I I+ + V D RL Sbjct: 171 DFSKIEAGKMILAEEPFGISPLVEGVTELLAPKAQGKGLDIASSIALDVPETLVGDPLRL 230 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ + NA+ F+ +G + +K R++ D F V + G +P +++F F Sbjct: 231 RQVLLNLAGNAVKFTEQGG-IGVKVFRESADSLCFEVIDTGPGVPPTCRETIFQDFEQGT 289 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +G G GLGL+I + + GG + ++S EG + +P Sbjct: 290 QKGCESGTGLGLAISKRLVERMGGSLHLASPLEGGALFSFSLP 332 >gi|170691707|ref|ZP_02882871.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia graminis C4D1M] gi|170142991|gb|EDT11155.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia graminis C4D1M] Length = 957 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 118/215 (54%), Gaps = 7/215 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++ ++NS + +S++LR+PLT I+GF+ +L S+ + ++++ + V+ I + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREHAADARRDDELVDAIHEEALRMTG 735 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V ++LD+A + AG ++LN +L + + ++ + + +R+++ +D L Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACKRVLSGHPVRVELAADLPLLQL-- 793 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSV 738 D + ++FS + NA ++S G+ + + A R + D F+ ++ +NG +P M V Sbjct: 794 DAVLMERLFSNLFENAAKYTSTGTPLTIGAQRFDADGKSFVRVTIDDNGPGLPAGMETRV 853 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +F + G+GLGL+I + + HGG + Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888 >gi|153806801|ref|ZP_01959469.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185] gi|149131478|gb|EDM22684.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185] Length = 623 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 381 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 438 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L N+V S++ +N Sbjct: 439 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCNQVVASVSFSRRSDN-- 496 Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725 + + + SF D QR+ Q+ ++SNA F+ +G T+ + +FSV + Sbjct: 497 -QFLFNTSFESFRMETDVQRMQQVIINLMSNADKFTKQGKITLDFSVNEETQMAVFSVTD 555 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 G IP++ VF RF Q G GLGLSI + + G + I G Sbjct: 556 TGCGIPKEKQALVFERFEKLNEYAQ--GTGLGLSICKLIVYKWKGEIWIDPDYTG 608 >gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ] gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ] Length = 735 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ ++S+E+R+P+ IIG L ++L + +Q Y+E + +ST LL+++ND Sbjct: 354 QAKSEFLANMSHEIRTPMNAIIGLAQLTLETRL---DPQQKSYLERLRNASTALLSIIND 410 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685 ILD + ++A +++ + + L D+L + T E +++ + I+D + D Sbjct: 411 ILDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDPL 470 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS--VKNNGSSIPEDMCKSVFNR 741 RL Q+ + ++SNA+ F+ +GS + A RD+ I V + G I ++ + +F Sbjct: 471 RLGQVLNNLISNAVKFTERGSVTVRAELADRDDQQVIIRILVSDTGIGIDKEQSERLFQP 530 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 F RR G GLGLSI + + L GG +++SS D+G T Sbjct: 531 FTQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGST 574 >gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 917 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ + +Q Y+ I S+ Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676 LL ++N+ILD + ++AG + L+ L DL+ + +A H + + +I Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731 S V D RL QI + ++SNA+ F+ +G T++++A D SV++ G + Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I G + + S+ Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDST 498 >gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 1819 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ ++ Sbjct: 1323 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1382 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1383 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1442 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1443 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1502 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1503 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1562 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1563 LLGGEIHAASEPGRGSTFTLYLP 1585 >gi|254445328|ref|ZP_05058804.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259636|gb|EDY83944.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 979 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 13/235 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E L E A++ K+ F+ +S+E+R+PL +++G++DLLK++ LN KQ + Sbjct: 448 SEADLILAKERAEAANQAKSEFLAVISHEIRTPLQSVLGYSDLLKST---PLNEKQRSCL 504 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I + ILL +V DILD + + +L Y + L L+ E ++I ++ Sbjct: 505 DTIQSEGKILLRIVQDILDFSNLRKANFELEYGPVRLRRLIEETFRTIKPMADRKGLKAS 564 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723 + K+ V +D RL Q+ + N++ ++ +G V+LKA + G+ F + Sbjct: 565 LEIAAKVPELVQSDGVRLRQVLLNLFGNSVKYTEEGE-VLLKAYFEKGNAGEELPLKFEI 623 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 + G I E +F F+ H + R G GLGL+IV + L GG + + S Sbjct: 624 LDTGVGIKEADLGRLFEPFIQLEHSSKFPREGAGLGLAIVNRIVELMGGRIDVES 678 >gi|169335527|ref|ZP_02862720.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM 17244] gi|169258265|gb|EDS72231.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM 17244] Length = 896 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 143/258 (55%), Gaps = 6/258 (2%) Query: 539 MLTFVNVTDSVRAERALTEKNE-ALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +++ VN ++ L EKNE AL +A ++++ + ++ +S++LR+PLT+I G +L Sbjct: 636 LISMVNECGAILENNYLEEKNEKALLEAKQEKLRANLLRSISHDLRTPLTSISGNASVLL 695 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 N+K+ + E + S L+NLV ++L + ++ G M LN +L++++ E Sbjct: 696 KDFDSLDNNKKHELYEDMYDDSMWLINLVENLLSVTRIEDGSMNLNIEPELLSEVIGEAL 755 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + I K E+NI+++ ++ +L D + ++Q+ I+ NA+ ++ +GS + +K + Sbjct: 756 KHINRKSVEHNIKVE--NNDELIMAKMDSRLIMQVIINIVDNAIKYTPEGSDITIKVNKK 813 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSI 774 NG S+ +NG I ++ K++F F + + RRG+GLGL + ++ +N HGG + + Sbjct: 814 NGYVYTSIIDNGKGISDEGKKNLFKMFYTGGNIADSRRGLGLGLYLCKTIVNAHGGELMV 873 Query: 775 SSSDEGVTTINCRIPSKE 792 + T + ++E Sbjct: 874 KDNTPKGTIFTFSLKAQE 891 >gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] Length = 1416 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EALR AD K+ F+ +++ELR+PL I +++L L + K S + I T Sbjct: 1048 EALRVADRQKDEFLAMLAHELRNPLAPIANASEVLLRIPLS--DPKLSFATDIIRRQITQ 1105 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LV+D+LD++ + G + L + L ++++ ++IA ++HE R+ + + G+ Sbjct: 1106 LSRLVDDLLDVSRITQGRIVLQRQPVELASVISQAVETIAPRLHERRHRLSIDTAGEPRH 1165 Query: 680 F--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736 D RL+Q IL+NA+ ++ + + R G+ + V +NG+ I ++ Sbjct: 1166 LWVQGDMARLVQCVGNILANAVKYTDPEGAIRVW-TRSEGELAVIGVSDNGTGISAELLP 1224 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 VF+ FV + R G+G+GL+IV+ + +HGG +S S G +T R+P Sbjct: 1225 HVFDLFVQSERTLDRALGGLGVGLAIVKRLVAMHGGTISAQSGGLGCGSTFEIRLP 1280 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 5/234 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + +AL + D K +F +VS+E R+PLT ++G + L + + + SQ ++ + Sbjct: 324 RADALAEIDRAKTAFFTNVSHEFRTPLTLMLGPIEELLAAP-DPVRPEASQALQVAHRNG 382 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVN +LD + ++AG ++ + L L ++ + + M N+ V + Sbjct: 383 LRLLRLVNSLLDFSRLEAGRLQARFVQTDLAKLTTDLASNFRSLMERANLSFTVDCEPIS 442 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 DR+ +I +LSNA F+ +G + RD + + V + G I Sbjct: 443 APVAIDREMWEKIVLNLLSNAFKFTMEGGVSVALRQRDRVELV--VSDTGIGIAAQELPR 500 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF RF + A G G+GL++V+ + +HGG V ++S TT IP Sbjct: 501 VFERFHRIEGARGRSFEGSGIGLALVDELVRMHGGKVEVASELGKGTTFTVAIP 554 >gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2151 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 20/245 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL EK E L + K+ F+ ++S+ELR+PL +++ + L + G+L S+Q ++ Sbjct: 1435 QAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSRQVEF 1494 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I AS LL L+NDILDL+ +++G M ++ + DL V ++ + + Sbjct: 1495 AKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKKGLEF 1554 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---------------VILKAA 713 + + D G D +RL Q+ +LSNA F+ GS +L AA Sbjct: 1555 HIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGSVSLDIGLAKGGWSPDHAMLSAA 1614 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F+V + G IP+D + +F F R+ G GLGLSI L GG Sbjct: 1615 --PAVVAFTVVDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGE 1672 Query: 772 VSISS 776 + + S Sbjct: 1673 IRLES 1677 >gi|298248741|ref|ZP_06972546.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551400|gb|EFH85266.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 821 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 25/245 (10%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K++F+ S+EL++PLT + L+T+ L +KQ I AS+ Sbjct: 587 NSARKELEQRKDAFISMASHELKTPLTAL-----KLQTALLHRQLAKQG-----IPASAP 636 Query: 619 ILLN----------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 L N LV+++LD++ + AG ++ T+ L+ LL E+ +++ + I Sbjct: 637 ALSNMEGQINKVTRLVDELLDVSKIQAGRLEYLQETVNLDALLREITETMQQTSPSHRIV 696 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ I + S + DR RL Q+F ++SNA+ +S TV + + V+++G Sbjct: 697 VRGIVET---SLIGDRDRLGQVFINLISNAIKYSPDAKTVEMDLSASEDAVTIQVRDHGL 753 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + C +F+RF V++ + G+G+GL IV + H G +++ S +T Sbjct: 754 GIPREQCDKIFDRFYRVTDPKQKAIHGLGMGLYIVAEIVKRHRGTITVDSEVGKGSTFTV 813 Query: 787 RIPSK 791 +P K Sbjct: 814 TLPRK 818 >gi|259418142|ref|ZP_05742061.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259347048|gb|EEW58862.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 516 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 24/353 (6%) Query: 204 FLVWHRDQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262 + VW + + W N++Y + N + G + S LF + M S A Sbjct: 159 YPVWLQSDDARVTWTNLAYDRLNQKIRG----RGNDTSAPLFPN-LDAPMSSGRA----- 208 Query: 263 CETVS-TLEHGNNKSYKIVRVLNSFGEAGI---AIDVSK----EITVNDQLTHTYEILHN 314 E VS L + K + V + EAG A+DV+ EI + + + Sbjct: 209 -ERVSIELPETDKKLWYNVSTTET--EAGWLCHAMDVNAVVDAEIAQRNFVQTLAKTFAQ 265 Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374 L++ +AIFD+NR L N ++L + +FL++ P+ + LR +PE N+ +W Sbjct: 266 LSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMSFFDRLRDQRMMPEPKNYSSW 325 Query: 375 KENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432 + + + +++ +++TW LP+G V +P G ++FE++T ++ L ++ + Sbjct: 326 RHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSE 385 Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 +++ +DH+ + AVFG DG + SN A+ ++WKT+ + I + T Sbjct: 386 LELGQSILDHIDDAFAVFGTDGSMVYSNTAYHTMWKTDPDASFAKISITDACRTWQELSG 445 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545 + W + +R +++ + L + L N M+ F + Sbjct: 446 PTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQSLQNGSVMVRFQQI 498 >gi|160882267|ref|ZP_02063270.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483] gi|156112356|gb|EDO14101.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483] Length = 754 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 10/259 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +T +N+ D E L E L + E+K SF+ ++S+E+R+PL +I+GF ++L Sbjct: 501 KTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILAL 559 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G + ++ +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ + +L++++ Sbjct: 560 ED-GLSSVEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYM 618 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715 + + +K + + L DR+RL+Q+ + L+NA F+ G + D Sbjct: 619 THQVLIAPRLEFLKEVDNIPL-EINVDRERLIQVLTNFLNNASKFTEIGYIKLGYIYLPD 677 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 G V++ G IP + + +F+RF Q G GLGLSI + I GG + + Sbjct: 678 EGHVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIDLK 735 Query: 776 S----SDEGVTTINCRIPS 790 S + CR+ S Sbjct: 736 SEVGKGSRFTVILPCRVVS 754 >gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] Length = 956 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E++L E + +A + K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 444 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 500 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 501 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 560 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + D + + D RL Q+ S +L+NA+ F+ G ++ A GD+ Sbjct: 561 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 618 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + F V+++G IP +F+ F QR +G GLGL+I E +N+ G + + S Sbjct: 619 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 678 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 679 EPGMGSQFIIRIP 691 >gi|295690559|ref|YP_003594252.1| histidine kinase [Caulobacter segnis ATCC 21756] gi|295432462|gb|ADG11634.1| histidine kinase [Caulobacter segnis ATCC 21756] Length = 264 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 3/215 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 D+ K SF++ VS+ELR+PL +IGF+++L G L + Q +Y + + S LL LV Sbjct: 36 DDRKRSFLRMVSHELRTPLNAVIGFSEILSHELYGPLGAPQYREYAQIVHESGVKLLKLV 95 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N I+++A ++ + + + L++ L +V + + ++ + I +I G L +AD Sbjct: 96 NQIVEIARLEGHVTDIKMTPESLDEALEDVIEGLRPEIARREVIIHIIGQGALPLVIADS 155 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + L + S +L NA+ S G V + A R + ++++ G + + F Sbjct: 156 RGLRTMLSNLLQNAVTHSPAGGVVHVAAGRIGAEVEVTIRDQGPGVDSAELPRLLQPFEQ 215 Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 R GVGLGL IV+ GG + +SSS Sbjct: 216 GGSPLTRANEGVGLGLPIVDLLSRAMGGRLKLSSS 250 >gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 1711 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 6/244 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S AER + EAL + D K F +VS+E R+PLT I G L+ S + + + + Sbjct: 330 SYEAER---RRAEALAELDRAKTDFFSNVSHEFRTPLTLIAGPVAELRASPVAASDPRVR 386 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + +E I ++ L LVN +LD + + AG + + + L E+ + + + Sbjct: 387 EELEVIERNAQRLGRLVNTLLDFSRIQAGRIDARFEPVDLAATTAELASVFRSAVARAGL 446 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 V G DR ++ +LSNA+ F+ G + ++ +++G SV + G Sbjct: 447 EFTVDCAPLDGPVHIDRDMWEKVVLNLLSNALKFTFTGG-IAVRLRQEDGSARLSVTDTG 505 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + IP D +F RF V++A G G+GL++V + LHGG + + S+ + TT Sbjct: 506 TGIPADELPRLFERFHRVADARGRSGEGSGIGLAMVRELVGLHGGTIDVDSAPDTGTTFT 565 Query: 786 CRIP 789 +P Sbjct: 566 VTLP 569 >gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis C6786] Length = 925 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 10/261 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T ++++ +E L E A +A++ K++F+ +S+E+R+PL IIG +LL+ S Sbjct: 414 LCTLLDISLRKESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 473 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +QS+ ++ + + S LL+++NDILDL+ V++G M L ++ LL ++ + Sbjct: 474 ---LSMRQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAY 530 Query: 659 ATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A + + + +G + D R+ QI S ++ NA+ F+ G I K Sbjct: 531 APLAESKGLELFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISIDVHRAKTG 590 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 N V + G I D ++F+ + RR G GLGL + + + GG Sbjct: 591 PGNSAIEIWVSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGS 650 Query: 772 VSISSSDEGVTTINCRIPSKE 792 + I S E TT+ +P E Sbjct: 651 IEIDSLPEFGTTVTVVLPLHE 671 >gi|62289544|ref|YP_221337.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82699473|ref|YP_414047.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189023801|ref|YP_001934569.1| sensor histidine kinase [Brucella abortus S19] gi|237815042|ref|ZP_04594040.1| sensor histidine kinase [Brucella abortus str. 2308 A] gi|254688862|ref|ZP_05152116.1| sensor histidine kinase [Brucella abortus bv. 6 str. 870] gi|254696993|ref|ZP_05158821.1| sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254729894|ref|ZP_05188472.1| sensor histidine kinase [Brucella abortus bv. 4 str. 292] gi|256257110|ref|ZP_05462646.1| sensor histidine kinase [Brucella abortus bv. 9 str. C68] gi|260545699|ref|ZP_05821440.1| sensor histidine kinase [Brucella abortus NCTC 8038] gi|297247957|ref|ZP_06931675.1| two-component system, PleD family, sensor histidine kinase DivJ [Brucella abortus bv. 5 str. B3196] gi|62195676|gb|AAX73976.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82615574|emb|CAJ10557.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189019373|gb|ACD72095.1| sensor histidine kinase [Brucella abortus S19] gi|237789879|gb|EEP64089.1| sensor histidine kinase [Brucella abortus str. 2308 A] gi|260097106|gb|EEW80981.1| sensor histidine kinase [Brucella abortus NCTC 8038] gi|297175126|gb|EFH34473.1| two-component system, PleD family, sensor histidine kinase DivJ [Brucella abortus bv. 5 str. B3196] Length = 609 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556 >gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 543 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E +A A + K+ F+ ++S+ELR+PLT ++G T++L T + + ++ Q + Sbjct: 156 RQLAE--QAAHAASQTKSEFLANMSHELRTPLTAVMGLTEVLNTEE---TDQEKRQLLAM 210 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I LLNL+NDILDL+ ++AG ++ N ++ EV S+ +I + Sbjct: 211 IRQGGDHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAKSIELSWT 270 Query: 673 SDGKLGSFVADRQ-RLLQIFSKILSNAMDFSSKGS-TVILKA-ARDNGDFIFSVKNNGSS 729 D + + +A RL QI + NA+ F+ GS TV L+ D+ FSV + G Sbjct: 271 MDDNMPTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFSVTDTGEG 330 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP + K +F F RR G GLGLSI + GG + + S +T R Sbjct: 331 IPPEGLKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQGSTFALR 390 Query: 788 IP 789 +P Sbjct: 391 LP 392 >gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2] gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2] Length = 454 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 5/214 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E +N F+ +S+ELR+PLT I G+ D+++ L +++QY+ I + L ++V + Sbjct: 222 EERNEFLSSISHELRTPLTYIKGYADIVQKRNLSP--EERNQYLSIILEETNRLSDMVKN 279 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 + DLA +D + +I L D + +++ + E + + V + + AD R Sbjct: 280 LFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVNCRESI-TISADASR 338 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 L QI +L NA+ +S+ G + R I ++K+ G I E+ +FNRF V Sbjct: 339 LEQIIFNLLDNAIKYSTAGDKTTININRTKKHVIINIKDTGRGISEEELPFIFNRFFRVD 398 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + G GLGL+IV+ ++ HGG +S+ S + Sbjct: 399 KSRARALGGTGLGLAIVKELVHAHGGTISVCSRE 432 >gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 638 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 13/226 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+E K+SF+ +S+E+R+PL +IGF D+L ++L N++Q +Y++ + SS L+ L+ Sbjct: 230 ANEAKSSFLATMSHEIRTPLNGVIGFIDMLSQTEL---NAEQQEYIQSLQMSSETLMALI 286 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + +++G M+ +I L LL E Q + + + +K+ ++ V D Sbjct: 287 NDILDFSKIESGRMEFETRSINLVRLLRETTQLFFGEAAKKGVELKLDFSEEVPRVVRGD 346 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI---FSVKNNGSSIPEDMCKS 737 R+ QI +L NA+ F+ GS + + G+ F + ++G + ED Sbjct: 347 ETRIRQILINLLGNAVKFTDTGSIAVAVHCYEPWTTGEVCEIEFEITDSGIGMTEDQVSK 406 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEG 780 +F+ F+ R+ G GLGL+I + GG + + S+ EG Sbjct: 407 LFHPFLQADSSTTRKFGGTGLGLAICKRLSEAMGGRIWATSTVGEG 452 >gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 631 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A + E +A +K+ F+ VS+ELR+PL ++G+ LL K+ +E I Sbjct: 237 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 294 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ ++L++D+LD++ + +G + L + L D+L +++I + NI I+ Sbjct: 295 ERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIET-E 353 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + D RL Q+F +L+NA+ F+ +G + L + +V++ G I Sbjct: 354 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPT 413 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789 +F+RF RR G+GLGL+I + + LH G ++ +SS D G TT+ +P Sbjct: 414 FLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVSLP 472 >gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 544 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ +A A+ K++F+ ++S+E+R+P+ IIG DLL + SL +Q +YV Sbjct: 148 LSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLLWET---SLTKEQREYVGIFR 204 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + LLNL+NDILDL+ V+AG +KL + L+ + + ++ + + + + I Sbjct: 205 TAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIK 264 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729 G V D+ RL QI +L NA+ F+ KG ++ L +N FSV + G Sbjct: 265 PDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKFSVSDTGIG 324 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 I ++ + +F F + G GLGL+I + + GGH+ + S E +T Sbjct: 325 IEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEIEQGST 380 >gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 933 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 16/260 (6%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D +A + + EK E L + + K+ F+ ++S+ELR+PL +I+ +++L + + +Q Sbjct: 498 DLQQANKDIEEKAEQLLLSSKYKSEFLANMSHELRTPLNSILLLSEMLSEGQGEEIPEEQ 557 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + I +S LL+L+NDILDL+ ++AG + + + + L++L + ++ + + + N Sbjct: 558 KEVAKVIHSSGKDLLSLINDILDLSKIEAGKLDMLFEEMNLSELPSYLEYNFSHLAQKKN 617 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------- 715 + + I++ G D+QR QI +LSN+ F+ KGS I D Sbjct: 618 LDFNISIAEDLPGIMYTDQQRFQQIIKNLLSNSFKFTEKGSVSIEVNLADPEKTKNLPLK 677 Query: 716 -NGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 DF +K + G IPE +F F R+ G GLGLSI F L GG Sbjct: 678 SKTDFWTEIKVSDTGIGIPESKQSIIFEAFQQGDGASVRKYGGTGLGLSICREFAKLLGG 737 Query: 771 HVSISSSDEGVTTINCRIPS 790 + + S + +T IPS Sbjct: 738 WIFVDSEEGKGSTFTLFIPS 757 >gi|315579767|gb|EFU91958.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0630] Length = 393 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ ++ + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEVKKINMQIQVKANPASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 878 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 10/231 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA+ A E A R K+ FV +S+E+R+PL ++GF DLL + L ++Q ++ Sbjct: 374 RADEARAESEAANRA----KSDFVAVMSHEVRTPLNALLGFADLLLQTP---LTAEQREW 426 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + LL +V+D+LD + ++AG ++++ L L + E + + Sbjct: 427 VTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGLAL 486 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +V D +L V D +R+ Q+ +L+NA+ F+ +G + +G F V + G Sbjct: 487 RVAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTERGHVALAVFPVADGRVRFEVLDTGI 546 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I + + +F FV RR G GLGL+I ++L GG + + S+ Sbjct: 547 GIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESA 597 >gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava] Length = 896 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 254 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQYDYLGTIEKSA 309 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 310 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 369 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 370 PL-ALSGDPLRLRQILTNLVSNAIKFTRQG-TIVARAMLEDETEEHAQLRISVQDTGIGL 427 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 428 SSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDST 476 >gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 849 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%) Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 W++ + + + GQ L ++ G + + ++T Q+ L Sbjct: 153 WRQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491 ID + +G +F R+ L N +R+++ L PG I + Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261 Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542 E+ G W A + +F + L G E D V+E+ P+ + Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ R + AL A A K++F+ ++S+E+R+P+ I+G DLL + L Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + E I +S LL ++NDILD + ++A + L+ L ++EV + K Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 I + + D L + FV D RL Q+ + ++ NA+ F++ G +I L+ A Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D +V++ G I + VF F RR G GLGL+I I L G V + Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549 Query: 776 S 776 S Sbjct: 550 S 550 >gi|323137189|ref|ZP_08072268.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397547|gb|EFY00070.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 814 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 9/275 (3%) Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 L S+ L S+ L ++ L + AE+ +K EA A K+ F+ ++S+E Sbjct: 482 LESERRLTASVTDLTRSRQTLEMQAQQLATLAEQYHHQKAEA-EAAYLAKSEFLANMSHE 540 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAG 636 LR+PL IIGF+++++ GSL S +YVEY I L +++DILD++ ++AG Sbjct: 541 LRTPLNAIIGFSEMMQAEPFGSLGS--PKYVEYCNNIRQGGAYLNEVLSDILDMSRLEAG 598 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 +++L + + D S ++ NI+I +D +L + D +++ +LS Sbjct: 599 LVRLAEREVNVADATRRAIASWRSRADAKNIQIVAEADDRL-RCIGDESAIVKALGVLLS 657 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754 N++ F+ G + L+A R V++ G I + F +A +G Sbjct: 658 NSIKFTDAGGFIRLRARRHGAAIAIFVEDTGRGIDPRAISRLGRPFEQSADLMENGMKGS 717 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + ++LHGG + I S T R+P Sbjct: 718 GLGLAIARALVDLHGGALRIRSRLGLGTIAMMRLP 752 >gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis NCTC 9343] gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis 638R] Length = 522 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + E+ L +AD +K+SF+ ++S+E+R+PL I+GF+ L+ + Sbjct: 281 DVTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DNE 337 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY + + +ST+LLNL NDILDL+ ++AG ++L+Y + L D+ ++ + + K Sbjct: 338 CEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYE-LHVKSV 396 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722 + +R+ + D +R+ Q+ +++NA+ F+S G I + D + F Sbjct: 397 KPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSVGE--IHFGFQKKADMVQFY 454 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + + G IP + ++F RF Q G GLGL+I + GG + + S T Sbjct: 455 MSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGEGT 512 Query: 783 TINCRIP 789 +P Sbjct: 513 VFYFTLP 519 >gi|121488659|emb|CAI64505.1| ethylene receptor [Prunus domestica subsp. insititia] Length = 741 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 140/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709 + + ++ + + +D + + V D +RL+QI ++ NA+ FS +GS I Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490 Query: 710 -LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 L+ R DN ++ VK++GS I P+D+ K +F +F R G G Sbjct: 491 SLRDFRSPEFYPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574 >gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1084 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 V+ T + E+ L E A K+ F+ ++S+E+R+P+ IIG T L L+T Sbjct: 540 LVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQTE--- 596 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L S+Q Y+ IS S+ LL +VNDILD + ++AG +++ ++ L +L EV Sbjct: 597 -LTSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADL 655 Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718 E + + IS D RL QI ++ NA+ F+ G ++ + R G Sbjct: 656 SAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFTQSGHVLVSVTQERHEGS 715 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G + + ++F F + RR G GLGL+I + +NL GG + Sbjct: 716 KTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIH 775 Query: 774 ISSS 777 + S+ Sbjct: 776 VRST 779 >gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei 87.22] gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1424 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 845 QARQELETRAQQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 904 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M + + L LL V+ + + ++ Sbjct: 905 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRKLLEYVEATFRPMTTQKSLDF 964 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAA---------RDNG 717 V + G + D RL QI +LSNA+ F+ G V I AA R Sbjct: 965 TVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEHGGVVLSIEPAADREVPTGVLRGGA 1024 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IP+ +++F F R+ G GLGLSI +L GG V++ Sbjct: 1025 VVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1084 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1085 STPGQGSTFTLYLP 1098 >gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1026 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T +++T +AE L E EA A++ K++F+ +S+E+R+PL IIG +L++ ++ Sbjct: 492 LCTLLDITTRKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQ 551 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + + ++ + I +SS LL ++ND+LDL+ ++ M L L ++NEV Sbjct: 552 MAAPLRRR---LGTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIF 608 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714 ++ + I+ +V D RL Q+ S ++SNA+ F+ +G I L A Sbjct: 609 RPLADAKSLVLTCRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAG 668 Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 G + +V + G IPED ++F+ +V RR G GLGL + + L GG Sbjct: 669 PAGRCVEIAVSDTGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGA 728 Query: 772 VSISS 776 +++ S Sbjct: 729 LNVDS 733 >gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] Length = 917 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli WV_060327] Length = 778 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IPED +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1461 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 924 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 981 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 982 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1041 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1042 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1101 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1102 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1141 >gi|240140253|ref|YP_002964731.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens AM1] gi|240010228|gb|ACS41454.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens AM1] Length = 914 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E ++ +A+ K+ F+ +S+E+R+P+ ++ +LL ++ L +Q +Y + I+ Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAKVIA 315 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL ++NDILD A V+AG +++ + D+ + V A + + + D Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730 G + S + D RL Q+ +SNA+ F++ G ++ ++ ++ + +V + G I Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGRVLRIAVSDTGIGI 435 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D +F F RR G GLGLSI E I GG V + S +T RI Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLGEGSTFWARI 495 Query: 789 P 789 P Sbjct: 496 P 496 >gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185] Length = 869 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ + E + +AD++K++F+ ++S+E+R+PL I+GF+DLL + + +Q++ Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-NFTEEEVTQFI 687 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + +LL L+NDILDL+ +++G M+ ++ L LL V S M + Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPAGVELVL 747 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729 + G D RL Q+ + +++NA F+ G T + + G V++ G Sbjct: 748 RMPAGDKKYLTTDNVRLQQVVNNLINNAAKFTGSGFITFGYEEDEEPGYTRIFVEDTGVG 807 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 I E+ + +F RF + Q G GLGLSI ++ + G +S++S T R+P Sbjct: 808 ISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 865 Query: 790 S 790 + Sbjct: 866 N 866 >gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33] Length = 655 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 11/239 (4%) Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RKA E +K+ F+ +S+ELR+PLT++ +L T +LG+L+++ Q + S+ L+ Sbjct: 414 RKAIERMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQQMLGIADDSTERLV 473 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVN++LDL +++G + + +L+ ++ + A + + ++ + S Sbjct: 474 RLVNNVLDLQRIESGKVIMECQACNAANLM--IQAAEAMQAMAQQQEVTLVKQPQDISVW 531 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMC 735 AD +LQ + +LSNA+ FSS G TV L ++ + +F V++ G IP D Sbjct: 532 ADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGIPADQL 591 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + +F RF V ++ ++ G GLGL+I I H G + S+ +T +P+ E Sbjct: 592 ERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFTLPTLE 650 >gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 917 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1476 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156 >gi|240146890|ref|ZP_04745491.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|257200964|gb|EEU99248.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|291534543|emb|CBL07655.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain [Roseburia intestinalis M50/1] Length = 421 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 132/271 (48%), Gaps = 25/271 (9%) Query: 537 QTMLTFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 QTML V + D+VR R +++ A + E+K F+ +S+E+++P+ I+ Sbjct: 3 QTMLIAVLIAALVGLFLFDTVRLRRMQVQRDAAKEEVAEVKTEFLSRISHEIKTPMNVIV 62 Query: 589 GFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644 G T LG ++ + +E I +S L+ L+ND++D++ ++ G L+ Sbjct: 63 GAT------ALGLEETEHPERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKP 116 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + LNEV+ + IR + + + + D R QIF +LSNA+ F+ + Sbjct: 117 YSFTEFLNEVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPE 176 Query: 705 GSTV---ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLG 757 G V I A N F + V +NG + E+ + +F F + ++G+ G GLG Sbjct: 177 GGEVTFRICNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGEPGNGAGLG 236 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788 L+IV S ++L GG +++ S + T I + Sbjct: 237 LAIVRSIVDLMGGTITVKSEPQKGTEIKVHL 267 >gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 526 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 126/252 (50%), Gaps = 21/252 (8%) Query: 552 ERALTEKNEA-LRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 E A +K EA +RKA E+K+ V +S+E R+PL I+ T+LLK Sbjct: 270 EVAERQKAEAEIRKALTTEQELSELKSRVVAMISHEYRTPLAVILTSTELLKRYSTQLSQ 329 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIA 659 KQ Y++ I + LV ++L AG ++ N + + D L++E + + Sbjct: 330 EKQQTYLDRIQMGVKQMAQLVEEVLTFNKAQAGELQFNPEPLNMEDFCLQLVDEQRLMVG 389 Query: 660 TKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 R + + +L S A D+Q L I + +LSNA+ +S+KG+TV L R++ Sbjct: 390 D-------RYTLTYNPQLSSGEAELDKQMLRHIVTNLLSNAIKYSAKGTTVSLSLRREDD 442 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I V++ G IPE +F+ F ++ G G+GLSIV++ ++LH G ++I+S Sbjct: 443 TLIIQVQDQGIGIPESEQPRLFSPFFRASNVSTIAGTGMGLSIVKNCVDLHQGQIAIASE 502 Query: 778 DEGVTTINCRIP 789 TT+ +P Sbjct: 503 VGKGTTVTVTLP 514 >gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107] gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107] Length = 916 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 12/230 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R T EA A + K+ F+ +S+E+R+PL I+G T+LL ++L KQ ++ Sbjct: 245 RQATASAEA---ASQAKSQFLAVMSHEIRTPLNGILGMTNLLLETEL---TPKQKRFARV 298 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S LL ++NDILD + V+AG ++L LN L+ ++ + A H + + Sbjct: 299 ARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHAKGLELLCN 358 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGS 728 + S D RL Q+ + +LSNA+ F+ +G + L DN + F V++ G Sbjct: 359 TPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLEVKLLLREDNLLHLHFGVRDTGI 418 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I + + +FN F RR G GLGL+I + + L GGH+++ S Sbjct: 419 GIRVEQAERLFNAFTQADSSMTRRYGGTGLGLAISQCLVELMGGHIALES 468 >gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 482 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 12/245 (4%) Query: 549 VRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 VR E A+ TE+ E R DE+ + VS+E+ +PLT +IGFT+ L +++ +Q Sbjct: 243 VRMEIAIDITERKEMERMKDEM----ISAVSHEMHTPLTAMIGFTEFLLENEVD--REQQ 296 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ I + L L+N+ L L + A ++K + + LL + ++ Sbjct: 297 KNCLQTIHKETERLSELINNFLQLQRLKASMVKFRIMPVSVGLLLADAAALYTAASRKHT 356 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I ++ D L + ++L Q+ ++SNA+ +S G TV L D+ +F VK+N Sbjct: 357 IVVECPPD--LPPVRGNEEQLYQVAGNLISNAIKYSPAGGTVTLGGRADDDMVVFWVKDN 414 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + + VF RF V N+ R + G GLGL++V + HGG V + S+ + +T Sbjct: 415 GVGISPEFQERVFERFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTF 474 Query: 785 NCRIP 789 +P Sbjct: 475 FVSLP 479 >gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] Length = 1053 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 12/251 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 Q + +VT AE+ L E A E+K+ F+ ++S+E+R+P+ IIG + L LK Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L KQ YV I +S+T+LL ++NDILD + ++AG + + + L ++L+ V Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381 Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 K + + + ++ + D R+ Q+ +++NA+ F+ +G S + Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 R G +F V + G + E +++F F R+ G GLGLSI + L Sbjct: 442 ERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 769 GGHVSISSSDE 779 G +S++S + Sbjct: 502 EGEISVTSQPD 512 >gi|76803907|gb|ABA55850.1| para-aminobenzoate synthase [Vibrio sp. DAT722] Length = 567 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 12/243 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER + + A +++ FV +++ELR+PL ++G +LL + L ++Q QY+ Sbjct: 189 EREIASRKRA-EESERATKEFVAMINHELRTPLNGVLGSAELLGRT---DLETEQHQYLT 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S +L ++ND+LD + ++AG+M++ +L + + A K E I + Sbjct: 245 NLMQSGELLRVIINDLLDFSKMNAGMMEIIRKDFAWPELESSLMGVFAAKAAEKRIHFSI 304 Query: 672 ISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 D KLG D +R+ QI ++ NA+ F+ G V+L+ +G F V++ G Sbjct: 305 --DKKLGIPNYLNGDAERITQILVNLVGNAIKFTKLGG-VVLRVEWLDGHLCFDVEDTGI 361 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP D ++F+ FV +R G GLGL+I ++ + L G +S S ++ T Sbjct: 362 GIPLDAQATLFDPFVQVDRSSKRNFEGSGLGLAITKNLVELMDGEISFVSKEKQGTIFKV 421 Query: 787 RIP 789 IP Sbjct: 422 SIP 424 >gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] Length = 842 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 183/394 (46%), Gaps = 57/394 (14%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT----------------HIR 481 + I+ +SE ++ GR+ + N +RS++ E L PG H Sbjct: 453 DAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPA 512 Query: 482 NIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--------------- 525 A R DG W + ER++ +G L + + + Sbjct: 513 PDGAKGVREAEMMDGRWIQIS--------ERRTAEGGLVMTAADITAIKTQEEARRRNEE 564 Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 L+ ++ L +Q L + A + TEK +A A++ K+ F+ ++S+ELR+PL Sbjct: 565 QLQNAVAGLERSQEQLAEL-------ARKYETEKVKA-ESANKAKSEFLANMSHELRTPL 616 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 I GF++++ G L ++ + Y + I +S LL L+NDILD++ ++AG M L + Sbjct: 617 NAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 676 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++ L D+ + + + + +++ I +L AD + + Q+ +LSNA+ F+ Sbjct: 677 SMHLEDVAEDAVRLVRNRAEAAGLKLD-IDFPQLPEIEADYRAVKQVLLNLLSNAIKFTP 735 Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 + +V ++A RD GD I SV + G I ++ + F V + +G GLG Sbjct: 736 RAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLG 795 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 L++ +S I +H G + + S+ TT++ +P + Sbjct: 796 LALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829 >gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. mori str. 301020] Length = 905 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 263 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 318 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 319 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 378 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 379 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 436 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 437 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 485 >gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 622 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 10/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +AD +K++F+ ++++E+R+PL I+GF+DLL + L + Y+ Sbjct: 382 EEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670 I ++ +LL++VND+LD++ +++ +M Y + L + ++ SI + E + + Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 D F DR RL QI +L+NA+ + KG I F V + G Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCG 555 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 IP+D ++F RFV + Q GVGL L+I + + GG++S+ S + +T +P Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLELAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613 Query: 790 SK 791 K Sbjct: 614 MK 615 >gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 655 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 42/352 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPA--------FRSLWKTEENRLSPGTHIRNIAATCSRYY 491 +D EG+ DG+I NPA R L ++ +++ G H R + T + Sbjct: 307 LDSAGEGICGLNQDGKITFINPAGARMTGYDIRELIMSDLRQITKG-HCR--SQTPGEPH 363 Query: 492 NESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFV 543 +S + I + +D R + G ++L + P Q ++TF Sbjct: 364 PDSLQP---SPIFATLEDGKVRHVIDGVFWRKDGTILPVEYVSTPMRQEGAIIGAVITFK 420 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ER EK +K+ F+ VS+ELR+PLT+I G LL + L S Sbjct: 421 DIT-----ERQAMEK---------MKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSP 466 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K + ++ + L+ LVNDILDL + +G + ++ + L DL+ + + Sbjct: 467 EKSQRMLDIAMFNCDRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAE 526 Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + + VI + K+ + DR R++Q+ + +LSN++ FS + A D + S Sbjct: 527 KAGVDLCVIPLEFKV---MVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENDVLIS 583 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 V++ G IP D +++F RF V + Q G GLGL+I S + HGG + Sbjct: 584 VRDRGRGIPPDKIETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKI 635 >gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185] Length = 500 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ + +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIASTYNELSDEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S L+ L++DILDL+ +++ +K YS L ++ ++++ A K I IK Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVKQLP-EIEIKA 374 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGS 728 + D RL Q+ ++NA F+ KG + +D ++F V++ G Sbjct: 375 LLPDDDIYINTDATRLKQVICNFINNARKFTEKGYIHFGFTSHSEKDQLVYLF-VEDTGE 433 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ K +F+RF N ++G GLGLSI ++ + G +S+ S Sbjct: 434 GIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVES 479 >gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 1128 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++NE L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI A + V + G IP Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SATVVDDQVRVQVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|310818759|ref|YP_003951117.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391831|gb|ADO69290.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 634 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 9/235 (3%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + E R+ E + V V ++LR+PL+ I LL KLG + + +V IS ++ Sbjct: 393 QEEEARQMAEFQEKLVAIVGHDLRNPLSAIQVSAALL-ARKLGEPSLLRKLHV--ISTAA 449 Query: 618 TILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 ++ D+LDL G + + L+ ++ EV + E +IR+ + + Sbjct: 450 DRAGHITRDLLDLTQARLGGGIPVRPQPCELHAVIREVAEEHHAAHPERDIRLDLAGTAE 509 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 V D +RL Q+ + +LSNA+++S G+ V + + R + + N G IPE+M Sbjct: 510 ---GVWDPERLAQVVANLLSNALNYSPPGTPVEISSQRHEEELVLRFHNQGPPIPEEMRS 566 Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F R G R G+GLGL I E ++ HGGH+ + S++ TT +P Sbjct: 567 RLFAPFKRRPERSAGPRDGLGLGLYIAERIVSAHGGHIGVDSTELQGTTFFVHLP 621 >gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] Length = 917 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 2/250 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + ++T+ R E L + EA A K F+ +S+ELR+PL+ I+G + L +S+ Sbjct: 165 YADITERKRMEIELQKAKEAADAAACAKGEFLTVMSHELRTPLSLILGPLESLLSSRDEP 224 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ + +E I S L LV+D+LD ++AG M++++ + + +L++++ + Sbjct: 225 LSPRVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKMQIDWEAVDVGELVSDMVEEARPA 284 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + + D +L ADR++L +I +L NA+ F+ G V + +G F Sbjct: 285 AARGGLDLSIRVDPELRRVPADRRKLEKIALNLLGNALKFTPPGGRVTVDLRALDGLFEL 344 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 SV++ G IP D +F RF + + + G G+GLS+ + L GG V + S Sbjct: 345 SVEDTGPGIPADRRHLLFQRFQQIDASATRKHEGTGIGLSLAKELTELMGGAVGVESEPG 404 Query: 780 GVTTINCRIP 789 + R+P Sbjct: 405 VGSRFFVRLP 414 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 668 RIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDF---I 720 R+ + +DG L + + +L ++ NA+D S GS V+++A R GD Sbjct: 725 RVHLETDGNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEARPRPRGDIHGVE 784 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F F + GQ G GLGLS+ FI H G + I S+ Sbjct: 785 IDVHDHGCGIRAEDLSRIFEPFFTTKPPGQ--GTGLGLSLTHRFIEEHQGSIRIESAPGE 842 Query: 781 VTTINCRIPSKE 792 TT+ +P+++ Sbjct: 843 GTTVRMWLPARQ 854 >gi|163795290|ref|ZP_02189257.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179276|gb|EDP63807.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 377 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 11/339 (3%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGW-DLFAA 502 VA++ D R+ +P + +++ E+ L PG R +++ +S G+ DL A Sbjct: 23 AVAIYDRDDRVVAVSPYYETMFPEED--LKPGLTYREALTRFGLHHDRVQSLGYSDLEAY 80 Query: 503 IITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 I R Q +L + +E +PLPN + +++ AE + E+ Sbjct: 81 IDAEVQRHRTPYTQQVYQLKNGRWIEARKVPLPNGGIAGLWRDISAQREAELEMRRSKES 140 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTIL 620 A K F+ +S+ELR+PL +IGF +LL+ S G++ + +Y I S L Sbjct: 141 TELASRAKADFLALMSHELRTPLNAVIGFAELLERSG-GTMQPETLGEYAGLIRTSGEQL 199 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L ++NDILDL + L I L + + + + L Sbjct: 200 LRMINDILDLTRLGGNEAALPMDLIRLESITATCLRITEPFARPRQVTLVDAVPTDLPPL 259 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVF 739 A+ L ++ +LSNA+ S GSTV L R N + ++G + E+ + Sbjct: 260 RAEVASLRRMIIHLLSNAVKVSPAGSTVTLTVERRPNNALSVIIVDDGPGMSEEQIAAAV 319 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F N RR G GLGL +V++ I LHGG + + S Sbjct: 320 QPFSQNDEVRSRRLTGAGLGLPLVKTLIELHGGRLVLDS 358 >gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1064 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 69/456 (15%) Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNPR 409 +DEL E S N++ QL F+ K SE+ + LP G ++H I Sbjct: 416 SDELGELAHSFNQMAHQLQAS------FAELKDSESRLFQYLEALPVGVSVHDIT----- 464 Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSN--PAFRSL 466 G ++ + Q+ TL+ Q + LS+ ++ G++ +N PA R+L Sbjct: 465 -GKLYYANQTSRQL---LNIQTLLDAQAK---ELSQAYQIYQAGTGKLYPTNALPAVRAL 517 Query: 467 ----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLEL 520 ++ + I I + YNE G ++A I +F D +RK + +L Sbjct: 518 KGEIVYIDDLEIHYPNKILPIEVWATPIYNEQ-GQIIYA--IAAFQDITQRKQAE---QL 571 Query: 521 LSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578 L+D LE + + + L E E A+ K++F+ ++S+ Sbjct: 572 LADYNCTLEAQV------------------TQRTQELAEAKEKAEVANVAKSAFIANMSH 613 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+PL I+GF+ ++ S +L ++ + V+ I+ S LL L+N+ILD++ ++AG + Sbjct: 614 ELRTPLNAILGFSQIMNRS--SNLPNEHQESVKIINRSGEYLLTLINNILDVSKIEAGKI 671 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697 LN L LL+E+++ K +++ + + ++ D +L ++ +LSN Sbjct: 672 TLNSKNFYLVRLLDEIEELFKLKSINQGLQLYFEREDNIPQYIQTDELKLREVLINLLSN 731 Query: 698 AMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 AM F+ G + R + F V++ G I + +F F S G+ Sbjct: 732 AMKFTQVGGIYLRVKTRSTPETEPSTQTLYFEVEDTGVGILSEELSQLFEAF-SQTQSGK 790 Query: 751 --RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G GLGL+I + F+ L GG +++ S GV TI Sbjct: 791 QAQEGTGLGLAISQKFVELMGGEINVKSQ-AGVGTI 825 >gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 917 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|309792572|ref|ZP_07687034.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225386|gb|EFO79152.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 720 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 7/252 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T+ + + A L++A++ K++F+ +S+ELR+PL I+GFT L G L Sbjct: 472 TLTNQIASAYARARLTRDLQRANQAKSAFLASMSHELRTPLNAILGFTGTLLMRLPGPLT 531 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + + I S+ LL L+NDILDLA +++G ++L +T++ ++L+EV + Sbjct: 532 ESQERQLSTIKRSAQHLLALINDILDLARIESGRLELRLTTVLAQEVLHEVIAELRPLAE 591 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS 722 + ++ ++ + D + L QI +++NA+ F+ G V L+ + +F Sbjct: 592 QRGLQFQMDAPESPLPLTTDLRILRQILINLVNNAIKFTDVGEVHVSLRC--ETQALLFV 649 Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I PED + +F F +++ R G GLGL + GG V++ S Sbjct: 650 VRDTGIGIKPEDQAR-LFADFGRINSVDVHTREGTGLGLRLAYRLAEALGGTVTLQSEYG 708 Query: 780 GVTTINCRIPSK 791 +T R+P + Sbjct: 709 VGSTFTLRLPYR 720 >gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1464 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 927 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 985 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144 >gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 667 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 14/251 (5%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + + T +++T AE+ L + + +A IK+ F+ +S+E+R+P+ IIGFTDLL + Sbjct: 255 EVLGTAIDITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDLLLS 314 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 S ++ QY+ I S+ LL ++NDILD + ++AG L L + L + + Sbjct: 315 S---GFTGQEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLGYLMK 371 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713 + + E +I+ + V D RL QI ++ NA+ F+ +G +V + Sbjct: 372 TFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVSVHLD 431 Query: 714 RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFIN 766 +D+GD I V ++G I ED +F+ F S AH G GLGLSI Sbjct: 432 KDHGDSIDLKIDVSDSGIGISEDKLSVIFDSF-SQAHNNNAVRNFGGTGLGLSITRKITE 490 Query: 767 LHGGHVSISSS 777 L G +S S+ Sbjct: 491 LMNGSISARST 501 >gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] Length = 1128 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++NE L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI A + V + G IP Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SATVVDDQVRVQVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|94264347|ref|ZP_01288139.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455241|gb|EAT05454.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 552 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 148/309 (47%), Gaps = 26/309 (8%) Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 AT ++Y+ S D A++ + DE + L + ++D + +Y QT Sbjct: 242 ATSMQHYSRSGHRD--DALVLATGDELQELSQSFADMADRLSDYHYSLEDRIQTA----- 294 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKL 599 D + + L E N+ L A+ K+ F+ S+ELR+PLT+I G + + T S Sbjct: 295 TRDLAASNQQLLEANQLLAAANRRKSDFIARASHELRTPLTSIKGGMEYIDTRLRHDSPA 354 Query: 600 GSLNSKQS-----QYVEYISASSTILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNE 653 ++N +S +++E I ++ L+ +VN +LD+ ++ G M LN+ST DL Sbjct: 355 TAVNQPKSHDELLEFIELIRNNTDRLIRMVNIMLDIERIEMGTMATLNWSTC---DLALV 411 Query: 654 VKQSIATKMH-ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +++S+A H + +++ G K AD RL Q+ + +L+NA+ F+ S + + Sbjct: 412 IRESVAEMAHTAAGKEVPLLAHGPKPLPIRADEDRLRQVLTNLLANAIKFAPAQSEINIH 471 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + + + + G + + +F +F G R G GLGL+I S I HGG Sbjct: 472 FKAEGAHAVVEISDQGPGVAAAEEEKIFEKFYK---LGDREGSGLGLAICRSIIEAHGGT 528 Query: 772 VSISSSDEG 780 + + + EG Sbjct: 529 IGVRPNPEG 537 >gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 975 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 125/238 (52%), Gaps = 6/238 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++T+ E L + +A K SF+ ++S+E+R+P+ +IIGF+DLL + Sbjct: 377 LVDITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---P 433 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q +++ ++ ++ LL L+N+ILD A ++ G + + L +++ + + + Sbjct: 434 LDQEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLE 493 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + ++ +K+ I + ++ D RL Q+ + ++ NA+ F+ +GS + N Sbjct: 494 AKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGSVTVTVGMTQNQHLF 553 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I +D ++VF F RR G GLG +I + + L GG +++ S Sbjct: 554 FEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVS 611 >gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans] Length = 934 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 132/253 (52%), Gaps = 24/253 (9%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L K +A A +K+ F+ ++S+E+R+P++ IIG ++ L S G LN +Q ++ Sbjct: 501 KQLIAKEKAALDASNLKSRFLANMSHEIRTPISGIIGLSEHL--SDCG-LNEEQLEFSNS 557 Query: 613 ISASSTILLNLVNDILDLATVDAGIM---KLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668 I S+ LL LVND+LD + +++G M + +S + +++D L I ++ Sbjct: 558 IEESAKFLLTLVNDVLDFSKMESGHMDVESIPFSPLKIISDTL------IPLRLQAKERG 611 Query: 669 IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721 + + D KL F+ D RL QI + ++ N++ F+ +G + + D D F Sbjct: 612 LALTFDCKLEPGAMFLGDPWRLRQILTNLIGNSLKFTQQGQIDLSVRSADLKDSTMVLHF 671 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778 +V + G I E++ +F F S A R G GLGL+I + + L GG +S++S+ Sbjct: 672 AVHDTGMGITEEVLDGLFTPF-SQADGSTARLYGGTGLGLAICKQLVELMGGQISLASTW 730 Query: 779 EGVTTINCRIPSK 791 TT C+IP K Sbjct: 731 GQGTTATCKIPFK 743 >gi|311104253|ref|YP_003977106.1| His Kinase A phosphoacceptor domain-containing protein 4 [Achromobacter xylosoxidans A8] gi|310758942|gb|ADP14391.1| His Kinase A phosphoacceptor domain protein 4 [Achromobacter xylosoxidans A8] Length = 964 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 14/234 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L +A +A++ K F +S+E+R+PL I+G +LL L + ++Q QY+ Sbjct: 470 ERTLRNAKQAADQANDAKTLFFATISHEIRTPLYGILGTLELLA---LTPMTTQQQQYLH 526 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS+ LL +ND LDL+ ++AG L S ++L V + A + ++I Sbjct: 527 TMQQSSSTLLRTINDTLDLSRMEAGHEDLILSEFSPTEMLEGVVANYAARAQGKGLQIFA 586 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKN 725 I+ + + V D RL QI + ++SN++ F+ G V+L+A A F V + Sbjct: 587 IAGTGMPAMVRGDPTRLQQILNNLVSNSVKFTEAGR-VVLRATTSAVAAGKATLRFQVAD 645 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 G I + +F + AH GQ + G GLGL+I ++L GG +S+ S Sbjct: 646 TGVGIRAESQTQLFEPYF-RAHSGQVQDAAGTGLGLAISRRLVDLMGGSLSLVS 698 >gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1476 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156 >gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 718 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 12/236 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R L + E +A+ + F+ +S+E+R+PL I+G +L++ K +Y Sbjct: 325 QANRQLRQAVEQANQANAARRDFLARISHEIRTPLNGIVGMIELVRLEY--DAKEKCLEY 382 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + S+ LL L++D+LD++ +++G + L+ + L EV+ T + + I Sbjct: 383 LRKATVSANYLLGLLSDVLDISRIESGKLTLHNDLADMRVLREEVEALAGTLAEKRQLTI 442 Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI-FS 722 ++ G K FV D RL Q+ ++SNA+ ++ G +++ A D+ + Sbjct: 443 RIDDSGMKHRYFVTDYLRLKQVLVNLVSNAIKYTGDGGHIVVNFSEEAATEDSRSLVTLQ 502 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V+++G I D K +F F G++R GVGLGLSIV + L GGH+++ S Sbjct: 503 VQDDGQGIAPDKLKEIFEPF-EQGGGGKKRENGVGLGLSIVTGTVTLMGGHINVES 557 >gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1157 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 12/224 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K+ F+ +S+E+R+PL +IG+ DLL L + + I + LL + Sbjct: 666 RASAAKSEFLAAMSHEIRTPLNGVIGYADLLLDGT--DLGPAARRNADRIRTAGAALLTV 723 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 VND+LD + V+AG +++ + L++ + + + V L ++ Sbjct: 724 VNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPDWIEG 783 Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGD--FIFSVKNNGSSIPEDMC 735 D RL QI +L+NAM F++ G V AA G F+V++ G IP D C Sbjct: 784 DEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIPTDKC 843 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F RF V + + G GLGL+I +S + L GG + ++S+ Sbjct: 844 DRLFRRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVAST 887 >gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1] gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 12/219 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL IIG ++LL + +L+ + +Y I S LL ++NDIL Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDIL 360 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D + ++AG ++L L+D + + +I +K+ +L G + D QRL Sbjct: 361 DFSKIEAGHLELAEQQFNLHDAVTTTLELAKATAGAKDIPLKLEYSPELPGELLGDPQRL 420 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVF 739 Q+ +LSNA+ F+ G V+ AA D F+VK+ G I + + +F Sbjct: 421 RQVLLNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIF 480 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F + + G GLGL+IV + GG + + S Sbjct: 481 EAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIKVES 519 >gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae Length = 929 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 287 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 342 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 343 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 402 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 403 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 460 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 461 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 509 >gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 920 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 21/249 (8%) Query: 544 NVTDSVRAERAL--------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594 ++T++V E+ L + K+EA ++A+ K+ F+ ++S+E+R+P+ IIG + L L Sbjct: 128 DITNTVSREQMLRNQARELHSAKDEA-QQANRAKSDFLANMSHEIRTPMNAIIGMSHLAL 186 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 KT LN+KQ YV I S+ +LL ++NDILD + ++AG + + L+D+L+ V Sbjct: 187 KTD----LNAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNV 242 Query: 655 KQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712 ++ K+ E + I D G V D RL QI +++NA+ F+ +G+ V+ + A Sbjct: 243 ANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAITA 302 Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 D + F V+++G + + +F F RR G GLGLSI + + + Sbjct: 303 ELDCESHVVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGM 362 Query: 768 HGGHVSISS 776 G + + S Sbjct: 363 MDGDIWVES 371 >gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. glycinea str. B076] Length = 917 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1464 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 927 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 985 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144 >gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 678 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A + E +A +K+ F+ VS+ELR+PL ++G+ LL K+ +E I Sbjct: 284 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 341 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ ++L++D+LD++ + +G + L + L D+L +++I + NI I+ Sbjct: 342 ERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIET-E 400 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + D RL Q+F +L+NA+ F+ +G + L + +V++ G I Sbjct: 401 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPT 460 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789 +F+RF RR G+GLGL+I + + LH G ++ +SS D G TT+ +P Sbjct: 461 FLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVSLP 519 >gi|22095687|sp|Q9ZWL6|ETR1_PASED RecName: Full=Ethylene receptor; AltName: Full=PE-ETR1 gi|4164159|dbj|BAA37136.1| ethylene receptor [Passiflora edulis] Length = 738 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ +I + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSKLEDGSLQLDSGTFNLHAVFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712 + + + L + V D +RL+QI I+ NAM FS +GS I L++ Sbjct: 432 PIASVKKLLLLLNLAPDLPEYAVGDEKRLIQIILNIVGNAMKFSKEGSISITAIVAKLES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD DF VK++G I P+D+ K +F +F G R G GL Sbjct: 492 LRDARVPDFFPTPSENHFYLRVQVKDSGVGINPQDIPK-LFIKFAQTQTTGARNSSGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I F+NL GH+ + S G Sbjct: 551 GLAICRRFVNLMDGHIWLESEGLG 574 >gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1476 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156 >gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|227891875|ref|ZP_04009680.1| two component system histidine kinase [Lactobacillus salivarius ATCC 11741] gi|227866338|gb|EEJ73759.1| two component system histidine kinase [Lactobacillus salivarius ATCC 11741] Length = 383 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ ++ E R DE+ + +VS+++R+PLT+IIG+ L++ + S +Y Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S + +LV+D+ + V L ++ LN +L ++ S + ++ + I I Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQVQSLELNAMLEQIGASFELEANKKGMEINTI 254 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731 AD ++L ++F+ +++NA+ + S G + L+ + D + + N+G IP Sbjct: 255 LPDSPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E + VF+RF V ++ + G GLGL+I +S I LH G++ + S++ +T+ R+P Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373 Query: 790 SK 791 K Sbjct: 374 IK 375 >gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 690 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 13/242 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +V AE L +N ++ D K++F+ +S+E+RSPL ++G T LLK + L +Q Sbjct: 301 TVYAE-VLLSRNRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETH---LTEEQI 356 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN- 666 + V+ I S++ L ++ DILD + + A ++L+Y + L +L + E + Sbjct: 357 KMVKAIDTSTSHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQ 416 Query: 667 -IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----F 721 IR+ V K F AD RL QI +LSNA+ F+ + L + D D + Sbjct: 417 YIRLSVSQSLKTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKI 476 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-D 778 V +NG + +D +F RF R+ G GLGL+I + L GGH++++S D Sbjct: 477 MVSDNGIGMSDDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVD 536 Query: 779 EG 780 +G Sbjct: 537 KG 538 >gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 795 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 130/246 (52%), Gaps = 13/246 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER L +K EA A++ K+ F+ ++S+ELR+PL IIGF+++++ G L SK +YV Sbjct: 521 AERYLEQKAEA-ETANKAKSEFLANMSHELRTPLNAIIGFSEVMQQETFGPLGSK--KYV 577 Query: 611 EY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I S LL +++D+LD++ +++G ++L S L+ ++ ++ E Sbjct: 578 DYSNDIKQSGEYLLGVISDVLDMSRLESGRVRLQKSEFELDAAVSGALATVEQIAREKE- 636 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I ++++ G ADR +I + +L NA+ F+ K V ++A G +++ Sbjct: 637 -ITLVAEAMPGKRANADRAAFEKILAILLRNAVKFTPKDGRVSVRARFVQGALNVYIEDT 695 Query: 727 GSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I P + F + + G +G GLGL+I S ++LHGG + I S+ T Sbjct: 696 GIGIAPAAQARLGRPFEQMGGSLDNGM-KGSGLGLAIARSLVDLHGGSMRIRSTVGSGTI 754 Query: 784 INCRIP 789 + +P Sbjct: 755 VLVHLP 760 >gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] Length = 1464 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 927 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 985 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144 >gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1] gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 12/219 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL IIG ++LL + +L+ + +Y I S LL ++NDIL Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDIL 360 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D + ++AG ++L L+D + + +I +K+ +L G + D QRL Sbjct: 361 DFSKIEAGHLELAERQFNLHDAVTTTLELAKATTGARDIPLKLEYSPELPGELLGDPQRL 420 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVF 739 Q+ +LSNA+ F+ G V+ AA D F+VK+ G I + + +F Sbjct: 421 RQVLLNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIF 480 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F + + G GLGL+IV + GG + + S Sbjct: 481 EAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIEVES 519 >gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 743 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 18/265 (6%) Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYE 579 +E +++P+ N + +T V + V A +A E+ A R A E K F+ +S+E Sbjct: 317 METNLVPVLDRNGKVEVT-VAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHE 375 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+P+ ++G +LL +KL + +Q QYV+ I +SST LL ++NDIL+L+ +DA M+ Sbjct: 376 IRTPMNGVVGMAELLSETKL---SIEQRQYVDTIRSSSTALLAIINDILELSRLDARKME 432 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698 L+ + + + + + +R+ + + + V D RL Q+ +L NA Sbjct: 433 LHPVNFDPVSCVRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNA 492 Query: 699 MDFSSKGS-TVILKA-ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--- 752 + F+ +G T+ L++ A+D G + V++ G I + + VF RF S A R Sbjct: 493 IKFTERGGVTLRLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERF-SQADADTTRLYG 551 Query: 753 GVGLGLSIVESFINLHGGHVSISSS 777 G GLGL+I + L GG +++ S+ Sbjct: 552 GTGLGLTISRELVALMGGRITVDST 576 >gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 591 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K ++++ FV +VS+EL++P+T+I GF++ L G++ KQ+ ++ I S Sbjct: 355 LKKLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAMEDKQALNDFLSIILKESDR 411 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +L+ D+LDL+ ++ L+ + L D+L +V + K E I K D K Sbjct: 412 LQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVY 471 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL Q+F I+SNA+ ++ + + AA+ + +++ G I +F Sbjct: 472 IEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKTGSTVLTEIRDTGIGIEASEIPRIF 531 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGL+IV+ + H G +S+ S T+ +P Sbjct: 532 ERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELP 583 >gi|302875217|ref|YP_003843850.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307688898|ref|ZP_07631344.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302578074|gb|ADL52086.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 554 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L K + +KN F +S+ELR+PLT I L + + + I+ ++ LL Sbjct: 293 LEKVNFMKNEFFNLISHELRTPLTLIYSSIQLANEIYKTEITENLDKTLTRINKNTGRLL 352 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVN+ILD++ ++AG M LN + + ++ +S+ H N + V+ D Sbjct: 353 KLVNNILDISKLEAGYMVLNITNTEIVSNTEDIVESVI--YHSNMKNVNVVFDTYEEEVY 410 Query: 682 --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D+++ +I +LSNA+ FS+ ++ + FI SVK+ G IP++ ++F Sbjct: 411 VHVDKEKYERIVLNLLSNAIKFSNDNKSIFVTMDFTENHFILSVKDQGVGIPKEKISTIF 470 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 NRF V N+ G GLGLS+V+ ++L G +S+ S+EGV TT ++P Sbjct: 471 NRFYQVDNSLTRNAEGTGLGLSLVQKLVDLMDGEISV-DSEEGVGTTFTVKLP 522 >gi|255604796|ref|XP_002538284.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223512911|gb|EEF24099.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 406 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+AL EK E+ +A K F+ +S+ELR+PL +I+GF LL+ + +L++ Q + + Sbjct: 5 EQALIEK-ESAERASLAKTQFLAQMSHELRTPLNSILGFARLLELNLRNTLSAPQLRQLR 63 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S LL+L+N+ILD++ +++G ++L + L+ LL ++ + E I + + Sbjct: 64 SIETSGRDLLHLINEILDISRIESGNIRLAIDDVPLHPLLEKIDHQMQPVATEAGIAMHI 123 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730 L AD QRL QI + +LSNA+ ++ V L A R +GD + V++ G + Sbjct: 124 AMPTDL-IVRADPQRLQQILTNLLSNAVKYNRADGAVHLHAFR-HGDIVRIEVQDEGEGL 181 Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F F A R G GLGL IV + G + + S Sbjct: 182 SAVQIRELFQPFNRLGAERSHVEGTGLGLVIVRALAEQMHGRLDVRS 228 >gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS] gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS] Length = 1262 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 127/241 (52%), Gaps = 12/241 (4%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSK 605 D R+ R L E A++ K+ F+ ++S+E+R+P+ IIG T L LKT L ++ Sbjct: 531 DLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTD----LTAE 586 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q Y+ ++ +SS LL +++DILD + ++AG++++ L+ +L+ + + ++ E Sbjct: 587 QQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEK 646 Query: 666 NIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720 + + + D + + + D RL Q+ +++NA+ F+ +G +I L Sbjct: 647 GLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNLTAKQITLC 706 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FS+K++G I + +F+ F R+ G GLGL+I + + + GG++ + S Sbjct: 707 FSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNIWVESQL 766 Query: 779 E 779 E Sbjct: 767 E 767 >gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae] Length = 907 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 265 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 320 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 321 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 380 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 381 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 438 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 439 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 487 >gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 577 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K F+ VS+ELR+PL IIGF+D+L G+ + +Q +YV + S LL +V I Sbjct: 320 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 379 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ +++G+ + ++ + + + NI ++ G AD++ + Sbjct: 380 LDVSRIESGVYATEPEPFRFAEAVDMCQSMMQLQAQAKNIDLQAQIAPDAGDINADQRAV 439 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ ++SNA+ F+ G V++ A R F V++ G I E+ ++ F+ + Sbjct: 440 QQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFMQIQN 499 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGLS+V+ + LH G +SI S TT+ +P Sbjct: 500 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 543 >gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 948 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 442 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 502 ---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 558 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + D RL Q+ S +LSNA+ F+ G ++L R GD+ Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVCR-AGDY 616 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + V++ G IP +F+ F QR +G GLGL+I E +++ G +S+ + Sbjct: 617 LSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDT 676 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 677 EPGMGSQFTIRIP 689 >gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 812 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 PN + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ I ++T+LL L +DI+DL+ +DAG + + L Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + K+ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHQGTI 724 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 + V++ G I + ++VF+RF+ Q G GLGL + +S I Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782 Query: 768 HGGHVSISS 776 GGH+ + S Sbjct: 783 MGGHIGVIS 791 >gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 870 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 15/233 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L + +A +A K+ FV ++S+ELR+P+T ++G DL S ++++ Y+E Sbjct: 478 EESLRQAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLALQS---CDETERTDYIE 534 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S+ LL ++ND+LDLA V+AG L+ L + + + ++ + + + Sbjct: 535 TAQRSARSLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELAL 594 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSV 723 I D + D+ RL Q+ + ++ NA+ F+ +GS I A R G +F FSV Sbjct: 595 QIEDHLPDHVLGDQVRLRQVLTNLIGNAVKFTERGSVRI--ALRAGGRSPQGPMEFRFSV 652 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ G IP+D +F F + +++ G GLGL+I + + GG +++ Sbjct: 653 RDTGIGIPQDKRHLLFVSFSQLDDSNTRSYGGTGLGLAISKEIVERMGGSIAL 705 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 12/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 TD +A AL E +A A+ K++F+ ++S+E+R+P+ I+G L+K + L Sbjct: 681 ARTTDLEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTH---L 737 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++KQ+ Y++ + S+ LLN++NDILD + +++G ++L + + + V + + + Sbjct: 738 SAKQANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEA 797 Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNG 717 + I + D FV D RL Q+ ++ NA+ F+ G + + Sbjct: 798 QQKGIVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQA 857 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 + IF V++ G I + +F F S A R G GLGL+I + + + GG + + Sbjct: 858 ECIFEVEDTGPGIAPGQQELLFQAF-SQADASTTREFGGTGLGLAISKRLVEMMGGEIGL 916 Query: 775 SSS 777 S+ Sbjct: 917 QST 919 >gi|167563062|ref|ZP_02355978.1| response regulator/sensor histidine kinase [Burkholderia oklahomensis EO147] Length = 317 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR P+ ++ +LLK G +Q + + Sbjct: 37 AHRDLKRLQAALRAS---RGSLAT-ASHELRGPVNGMLALVELLKE---GLRTPEQQRLL 89 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +RI+ Sbjct: 90 SLVQDSGQSLARVLNDILDHASIEAGQFAIERTRVDVRELVDSVTAMLAVHAHRKGLRIR 149 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 150 LHVDADVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGSVEIVATIAD 209 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F FV A RG RR G GLGL+I L GG V+++S + T Sbjct: 210 TGIGIAADELRRLFTPFV-RARRGARRTEPGTGLGLAIARRLARLLGGDVTLASEEGRGT 268 Query: 783 TINCRI 788 T RI Sbjct: 269 TATARI 274 >gi|163747910|ref|ZP_02155243.1| Signal transduction histidine kinase [Oceanibulbus indolifex HEL-45] gi|161378818|gb|EDQ03254.1| Signal transduction histidine kinase [Oceanibulbus indolifex HEL-45] Length = 641 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ + +KN FV VS+ELR+PL ++ G LL + + + S +S L Sbjct: 378 KRLEALKNDFVATVSHELRTPLASVHGALRLLAGVIGEGAPEQVDKLLGMASRNSERLTQ 437 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISDGKLGSFV 681 +VND+LD + AG + + + D ++ V+Q++ + N + V+ D + Sbjct: 438 VVNDLLDFQKLTAGHFSVEITQV---DAVDIVQQTVVDNEPFANKFSVSVLVDAPEHPVI 494 Query: 682 --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD QRL Q+ + +LSNA FS G+TV +KA D F+ SV N G I + K +F Sbjct: 495 IHADAQRLKQVLTNLLSNAAKFSDCGTTVDVKAGIDEEAFLISVTNRGRGISPEFGKRLF 554 Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F A R G GLGL+I + + GG + SS TT R+P Sbjct: 555 EPFSQQAEHLTRDREGTGLGLAISKELVENMGGAIGYSSQINVQTTFWVRLP 606 >gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1967 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 18/244 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ AL EK E L + K+ F+ ++S+ELR+PL +++ + L + G+L S+Q ++ Sbjct: 1251 QAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSRQVEF 1310 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I AS LL L+NDILDL+ +++G M ++ + DL V ++ + + Sbjct: 1311 AKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKKGLEF 1370 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719 + + D G D +RL Q+ +LSNA F+ GS V L G + Sbjct: 1371 HIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGS-VSLHIGLAKGGWSPDHAMLSS 1429 Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F+V + G IP+D + +F F R+ G GLGLSI L GG + Sbjct: 1430 APSVVAFTVADTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGEI 1489 Query: 773 SISS 776 + S Sbjct: 1490 RLES 1493 >gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus] Length = 359 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 17/232 (7%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A + K+ F+ +VS+ELR+PL +IG ++LLK S LN +QS Y + I + LL++ Sbjct: 15 EAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQSGYADSIRVCADTLLSI 71 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---F 680 +ND+LD + ++AG M + I LN+ + EV +++A E +K I +L Sbjct: 72 INDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLELDPEMLV 129 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735 + D RL QI +LSN+ F+ +GS V ++A D D SV + G IP++ Sbjct: 130 MGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 188 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 + +F F R G GLGLSI ++ I N+ G V + S TT+ Sbjct: 189 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 240 >gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 539 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 9/233 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + E E A + K+ F+ ++S+ELR+PLT++IGF+ LL+ S+ L ++ YVE Sbjct: 143 EAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQGSE--HLPPEERIYVE 200 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670 I+ +S LL ++NDILD + ++A ++++ L++ I ++ + ++ Sbjct: 201 RIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQCSLKGLILRV 260 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNN 726 V++ D+ RL Q+ LSNA+ F+++G + R + ++ +V + Sbjct: 261 VVAADTPARLTGDKGRLRQVMLNFLSNAVKFTARGEVTLTLDGRFDESGLWRMRAAVSDT 320 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 G IP + +F+RF R G GLGL+I + L GG + + S+ Sbjct: 321 GIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEIGVDST 373 >gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 950 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 413 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 470 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 471 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 530 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 531 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 590 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 591 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 630 >gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 841 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|262404070|ref|ZP_06080625.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio sp. RC586] gi|262349102|gb|EEY98240.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio sp. RC586] Length = 630 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ Q LT N +T+ E+AL + E +A E +N F+ VS+ELR+P+ ++G Sbjct: 67 PINKRQYYLTLFNDITELKETEQALRQSTEQALQAVEARNHFLAVVSHELRTPIAAMLGL 126 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + L S +SQ + + +S L L VNDILD + ++A +++L+ ++ L D Sbjct: 127 MEILAS----RLKSSESQLLLTNAINSAERLKLHVNDILDFSKIEAKLLQLDIASYNLAD 182 Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L + + I ++VI S L D R QI + +LSNA+ F+ +G V Sbjct: 183 ELGPLLRGFEASAQLKQIELEVIWSPSALLLVKFDALRFNQIVTNLLSNAIKFTEQGR-V 241 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 ++K + I +++ G + + S+F FV RR G GLG+SIV + I Sbjct: 242 VVKVEVASNRLILVIEDTGCGMTQAQIDSIFVPFVQADSTITRRFGGTGLGMSIVANLIE 301 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L G +++ S+ T + +P Sbjct: 302 LMQGQITVQSALNEGTQVTISLP 324 >gi|218246905|ref|YP_002372276.1| histidine kinase [Cyanothece sp. PCC 8801] gi|257059966|ref|YP_003137854.1| histidine kinase [Cyanothece sp. PCC 8802] gi|218167383|gb|ACK66120.1| histidine kinase [Cyanothece sp. PCC 8801] gi|256590132|gb|ACV01019.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 857 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 19/245 (7%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ L+ A+E KN + + +E R+PLT I+GF DLL + +LN +Q + + + S Sbjct: 384 ERTAELQAANESKNELLSQIGHEFRTPLTIILGFIDLLDRDR--TLNPQQQENLAIMRRS 441 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL+L +IL+++ ++ LN +++ L+ L+N V + + K N+ + + Sbjct: 442 GEYLLSLFAEILEISRLETHKNALNLTSVNLHSLVNSVMEIVGIKAQGKNLPVVAYIAPE 501 Query: 677 LGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNG 727 L ++ D ++ QI +L NA+ F+ +G + L+ ++ + I F V++ G Sbjct: 502 LPQYIKIDENKVRQILINLLDNAIKFTDEG-LISLRIISEDPEMISQSSPQITFEVQDTG 560 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS--DEGVTTI 784 S I ++ VF FV RG +G GLGLSI + + L G +++ S D+ T I Sbjct: 561 SGISPEIQAKVFEPFV----RGSTGKGAGLGLSIAQKLVQLMEGEITLVSPVQDQKGTLI 616 Query: 785 NCRIP 789 +P Sbjct: 617 RFHLP 621 >gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] Length = 763 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E AL E A++ K+ F+ ++S+E+R+P+ +IG +L+ + L+ Q Y E Sbjct: 223 EAALERACEDADIANQAKSDFLANMSHEIRTPMNGVIGMAELIMET---DLDEDQQIYAE 279 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS S T LL ++NDIL+ + ++AG ++LN + L + +V ++ + + + I + Sbjct: 280 TISKSGTALLTIINDILNFSKIEAGKVELNLAPFNLLTAIEDVVTLLSPRANAKGVEIIL 339 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK--NNG 727 D L F D R+ Q+ + I+ NA+ F+ G V + +++ ++ ++K + G Sbjct: 340 RYDPNLPEFFEGDVGRVRQVITNIIGNAVKFTDVGYVHVDVSGGKNSENYSLTIKVADTG 399 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG-VTT 783 IP + ++VF+ F V + G GLGL+I + L GG V+++S + EG + T Sbjct: 400 IGIPANRLEAVFSAFEQVDSGATRSFEGTGLGLAISARLLALMGGEVAVASKAGEGSIFT 459 Query: 784 INCRIPSKE 792 + +P E Sbjct: 460 VQLPLPRAE 468 >gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1465 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 927 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 985 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144 >gi|262192282|ref|ZP_06050438.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT 5369-93] gi|262031832|gb|EEY50414.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT 5369-93] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|229524361|ref|ZP_04413766.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae bv. albensis VL426] gi|229337942|gb|EEO02959.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae bv. albensis VL426] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|88603878|ref|YP_504056.1| histidine kinase [Methanospirillum hungatei JF-1] gi|88189340|gb|ABD42337.1| histidine kinase [Methanospirillum hungatei JF-1] Length = 397 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/359 (23%), Positives = 172/359 (47%), Gaps = 26/359 (7%) Query: 438 ETIDHLSEGVAVF----GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493 +T+D++ VF P G I+ +N R+L + G HIR I + S +N+ Sbjct: 17 KTLDYILHKSQVFLLILSPSGEIRYANTYARTLLTQDPT----GVHIREILLSGS--WND 70 Query: 494 SDGWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 S D + +T + DD ++L T+ +D+ Y I +++ + Sbjct: 71 SLLADWTSGDVTPIMNIRTHDDLPRTLYITV-YPTDA--GYLIFGHSDSEELHRLSKEVL 127 Query: 548 SVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + E R L +N L + + +KN F+ +++LRSPL+ I+ +T+ L +L Sbjct: 128 GLNRELGILTRELQVRNRELAELNRMKNQFLGMAAHDLRSPLSLILNYTEFLMEDLQDNL 187 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + ++++ I S+ + ++ D LD++ +++G + LN I L+ E+ + Sbjct: 188 SDEHREFLQTIITSALDMKQVIADFLDVSIIESGHLMLNPGPISFETLMQELLRKTGLSA 247 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +IRI ++G++ + D ++ Q+ + ++ NA+++S + + R + +F Sbjct: 248 ERRSIRITWKTEGEMPTLYVDVGKIGQVLANLVHNAIEYSPDQGEIEILGQRTDTGIVFM 307 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V+++GS I ++ +F+ F S + R +GLGL I + HGG + + S+ + Sbjct: 308 VQDHGSGISKEKQDKLFSEFSGTSMKKKNGERSIGLGLIISRKIVEAHGGSMFVESTPD 366 >gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 765 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 14/239 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L ++ EA +A K+ F+ +S+E+R+P+ +IG ++L+ + +L+ Q Y+ Sbjct: 240 RRLVQEAEAANRA---KSQFIATMSHEIRTPMNGVIGMVEMLRDT---TLDDSQRHYLGI 293 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671 I S L+N++NDILD + ++AG M L + L +LL + Q + + NI I Sbjct: 294 IERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICS 353 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726 IS + D RL Q+ ++ NA F+S+G + + D FSV+++ Sbjct: 354 ISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEARQVNASDADLPMIHFSVEDS 413 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + + +F+ F R+ G GLGL+I + + GG + + S ++ +T Sbjct: 414 GIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGST 472 >gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1888 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 12/237 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +AL E A+ K+ F+ ++S+ELR+PL I+GFT ++ + +L+++ Q Sbjct: 1392 RQSQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDR--ALSTEHQQN 1449 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ + LLNL+NDIL+++ ++AG + LN ++ L LL +++ + + + + Sbjct: 1450 LAIINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLEL 1509 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720 L ++ AD +L Q+ +L NA+ F+ G ++ A + G+ I Sbjct: 1510 NFEYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDTGRVMLRVAMENMGEKILPHPPHLF 1569 Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G I +F F + R ++G GLGL+I ++ L GG +S++S Sbjct: 1570 FEVTDTGRGIAPQEINLLFEAFGQTETGRKSQQGTGLGLAISRKYVELMGGDISVTS 1626 >gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 837 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 195 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 250 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 251 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 310 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 311 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 368 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 369 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 417 >gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1476 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ A + E L + D K +F ++S+E R+PLT I+G + L+T +L +++ Sbjct: 333 SARSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRT-QLAGADARVR 391 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + +E I + L LVN +LD + ++AG M+ Y + L+ + ++ + + + + Sbjct: 392 EELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGL 451 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++ DR ++ +LSNA+ F+ GS + ARD + +V + G Sbjct: 452 DFRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFDGSIGVTVRARDE-HAVITVTDTG 510 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + + +F RF + NA G G+GL++V+ + LHGG ++ S++ T Sbjct: 511 IGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFT 570 Query: 786 CRIP 789 R+P Sbjct: 571 IRLP 574 >gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 841 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A A+ K+ F+ ++S+ELR+PL IIG +DLL ++ SL+++Q ++ I S+ Sbjct: 189 DAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYST---SLSNEQKRFTFVIKESAYH 245 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678 L+L+ ILD+A ++AG ++L + L+ LL+ + E IRI + D ++ Sbjct: 246 QLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIALRYDPEIPF 305 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDM 734 + + D + + QI I+ NA+ F+ GS + A + N F+V + G + ED+ Sbjct: 306 ALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVTDTGIGMSEDV 365 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F RR G GLG +I ++ L GG +S+ S TT +P Sbjct: 366 QGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGTTFTINLP 422 >gi|42781026|ref|NP_978273.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] gi|42736947|gb|AAS40881.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987] Length = 355 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 133/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 170 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 231 CIKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQC 289 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP++ VF +F +RG++ G G+GL+I S LH G +++ S++ E V Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 345 Query: 783 TI 784 TI Sbjct: 346 TI 347 >gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1313 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 175/398 (43%), Gaps = 56/398 (14%) Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP--------AFRS 465 W L + + + N +++ ++H + + DGRI+ NP AF Sbjct: 664 WNAVGLLRDITEQKRINASLRMLSAAVEHSPVSIIITDRDGRIEYVNPKSCQMTGYAFEE 723 Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGTLE 519 L + TH +Y +L+ I++ F + RK G+L Sbjct: 724 LRGQNPRIMKGPTH-------PPEFYK-----NLWETILSGREWYGEFHNRRKD--GSLV 769 Query: 520 LLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEK-----------NEALRKADE 567 + SI P+ + + +T FV V + + ++ L E+ + +A+ Sbjct: 770 WVM-----ASISPIYDEKGEITHFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANR 824 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ +S+E+R+PL IIG +DLL ++L + +QS Y+ + ++ L L+NDI Sbjct: 825 AKSEFLAGMSHEIRTPLNAIIGMSDLLAETRL---DGEQSGYLSVVHSAGETLQGLINDI 881 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686 LDL+ ++AG+++L+ L D + ++ + K + + + D R Sbjct: 882 LDLSKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLR 941 Query: 687 LLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741 L Q+ ++ NA+ F+ G +V+L+ + + + + FSV + G I + ++F Sbjct: 942 LRQVLINLVGNAVKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFES 1001 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F RR G GLGL+I + GG + + S+ Sbjct: 1002 FSQADSSTTRRYGGTGLGLAISRHLAGMMGGEIGVEST 1039 >gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 923 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 130/281 (46%), Gaps = 27/281 (9%) Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 T + DE ++ G LE L L+ AQ + + V ERA NE R Sbjct: 370 TGYPDEMGAMAGALEELRVGALK--------AQHLQRLLEKAQEVEIERA----NEVSRA 417 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 K F+ +S+E+R+PL I+G LL S L +++Q Q+++ ++ S ++LL ++ Sbjct: 418 ----KTDFLATMSHEIRTPLNGILGMAQLLDDSPL---SAQQRQWLDAVAQSGSLLLAIL 470 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ ++AG M+L ++LL + ++ + + + D Sbjct: 471 NDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEYPALPARLIGDP 530 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSV 738 ++ Q+ ++ NA+ F+ G V+ + D G F V + G I V Sbjct: 531 AKISQVLLNLVGNAVKFTHSGEVVLSVNWAPDEQRPDRGRMEFRVTDTGIGIARQAVPHV 590 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F+ F + RR G GLGL+I + I+ GG +++ S+ Sbjct: 591 FDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVEST 631 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 13/246 (5%) Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AL E+ +AL+ A++ K+ F+ ++S+E+R+PL II + L+ + L SKQS Y+ Sbjct: 418 ALEEREKALQCAEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQT---PLTSKQSNYL 474 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-SIATKMHENNIRI 669 E I ++ LL ++NDILD + ++AG + L++ L+D+++ V +IA K ++ + Sbjct: 475 EKIESAGRTLLGVINDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLL 534 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 ++ + D RL + + +NA+ F+ G VI A+ + FSV++ Sbjct: 535 YHVTPSTPTQMMGDPMRLGAVLINLTNNAIKFTEHGEVVIRVDAKQQREQHYLLHFSVQD 594 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + K +F F RR G GLGL+I + + L GG +S+ S TT Sbjct: 595 TGIGISAEQQKRLFQSFSQADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTT 654 Query: 784 INCRIP 789 IP Sbjct: 655 FEFTIP 660 >gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] Length = 776 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 131/252 (51%), Gaps = 12/252 (4%) Query: 535 NAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + +L ++TD V E E+ EA+R + K+ F+ ++S+E+R+PL I+G T+L Sbjct: 96 GGEVLLGAFDITDQKVTEEHLRKEREEAIRSV-QSKSRFLANMSHEIRTPLHTILGMTEL 154 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ ++ L+ +Q YV+ I S LL L+NDILD + ++AG + + L +++ + Sbjct: 155 LEDTR---LDEEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQ 211 Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709 ++ + H+ ++ + V I + D R+ QI + +NA+ F+ KG V Sbjct: 212 AVGMVSLQAHKKHLEVVVDIGEEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQ 271 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 L R ++ F+V++ G IPE+ +F F RR G GLGL+I +S + Sbjct: 272 LVQERKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVE 331 Query: 767 LHGGHVSISSSD 778 + G + + S + Sbjct: 332 MMKGEIGVRSKE 343 >gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 748 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 11/242 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+T +VR E L E A+ K++F+ ++S+E+R+P+ I+G T+LL + L Sbjct: 201 LNITATVRHEAELNAARERAEAANRAKSAFLANMSHEIRTPMNGIVGMTELLTET---PL 257 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N +Q Y+ I S LL ++ND+LD + ++A + L+ L + EV + + Sbjct: 258 NEEQRLYISTIRNSGEALLVIINDVLDYSKIEADKLTLHPEQFDLERCILEVAMLLQPSV 317 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716 + + + V D L + FV D R+ QI + ++ NA+ F+++G T + A+ + Sbjct: 318 RDKGLTLLVDYDLFLPTLFVGDPGRIRQILTNLVGNAVKFTAQGHVLVRVTGVPDASAQS 377 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 D ++++ G I D +F F + +A Q G GLGL+I + I + GG V + Sbjct: 378 CDIHVAIEDTGIGIEADKIAHIFGEFNQIEDAQNRQFEGTGLGLAITKRLITMMGGTVWV 437 Query: 775 SS 776 S Sbjct: 438 ES 439 >gi|182682436|ref|YP_001830596.1| PAS/PAC sensor signal transduction histidine kinase [Xylella fastidiosa M23] gi|182632546|gb|ACB93322.1| PAS/PAC sensor signal transduction histidine kinase [Xylella fastidiosa M23] Length = 558 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521 >gi|121727517|ref|ZP_01680635.1| sensor histidine kinase FexB [Vibrio cholerae V52] gi|147673942|ref|YP_001217872.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae O395] gi|262168356|ref|ZP_06036053.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae RC27] gi|121630185|gb|EAX62587.1| sensor histidine kinase FexB [Vibrio cholerae V52] gi|146315825|gb|ABQ20364.1| sensor histidine kinase FexB [Vibrio cholerae O395] gi|227014264|gb|ACP10474.1| sensor histidine kinase FexB [Vibrio cholerae O395] gi|262023248|gb|EEY41952.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae RC27] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae 642] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|301299825|ref|ZP_07206061.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852578|gb|EFK80226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 383 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ ++ E R DE+ + +VS+++R+PLT+IIG+ L++ + S +Y Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S + +LV+D+ + V L ++ LN +L ++ S + ++ + I I Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQIQSLELNAMLEQIGASFELEANKKGMEINTI 254 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731 AD ++L ++F+ +++NA+ + S G + L+ + D + + N+G IP Sbjct: 255 LPNNPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E + VF+RF V ++ + G GLGL+I +S I LH G++ + S++ +T+ R+P Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373 Query: 790 SK 791 K Sbjct: 374 IK 375 >gi|229514004|ref|ZP_04403466.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TMA 21] gi|229349185|gb|EEO14142.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TMA 21] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 696 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 5/231 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 ++EA R A+ IK+ F+ +S+ELR+PL I+G++ L+ + N + +E I ++ Sbjct: 309 RSEAER-ANRIKDDFLATLSHELRTPLNAILGWSQLILQGTMK--NEDIQRGLETIERNA 365 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+ D+L+++++ + ++L+ L + +S+A I I+ D Sbjct: 366 RAQNKLIEDLLEMSSIISNKIRLDMQEWDLGAIAEAAVESVAPAAEAKGICIRRTIDATA 425 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 G + D RL QI +LSNA+ F+ G TV + R VK++G I + Sbjct: 426 GRVLGDNHRLQQIIWNLLSNAVKFTPDGGTVEVIVERAASQLRVIVKDSGVGIKPEFLAY 485 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 VF+RF R G+GLGL+IV+ + LHGG V S EG C Sbjct: 486 VFDRFRQADSSLTRNHGGLGLGLAIVKQLVGLHGGTVCAESKGEGQGASFC 536 >gi|39995255|ref|NP_951206.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982017|gb|AAR33479.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|298504260|gb|ADI82983.1| sensor histidine kinase, PAS and GAF domain-containing [Geobacter sulfurreducens KN400] Length = 709 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/352 (24%), Positives = 161/352 (45%), Gaps = 67/352 (19%) Query: 492 NESDGWDLFAAI------------------ITSFDDERK----SLQGTLELLSDSVLEYS 529 +ES GW FAA+ + SF DE S+ G + ++ ++ ++ Sbjct: 312 DESAGWKGFAAVPLFAKNRVTGVMYLLNRQMRSFTDEELKLFFSIAGQMGIIIENARLFN 371 Query: 530 IIPLPNAQTMLTFVNVTDS----------VRAERALTEK-NEALRKADEIKNSFVQHVSY 578 + + + M +F + S +R L E+ N+ L + D +KN+F+ +S+ Sbjct: 372 ELKWKSDELMGSFRLLEKSSHELALSQHRLRTNLTLVERANQELERIDRMKNNFLGMISH 431 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 E R+PLT++I TD L++S + + Q ++ I L +VNDIL +A ++A Sbjct: 432 EFRTPLTSVISGTDFLRSSSSLAGDPDSRQVLDMIHEGGERLFEIVNDILKVARLEAKSA 491 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 + + ++ + ++V + + E ++RI + L + D++ +IFS++L N+ Sbjct: 492 TVARRALHISQVFSQVVTKLEPLLAERSLRIVFNNLEGLPHCIGDQECFEEIFSELLENS 551 Query: 699 MDFSSKGSTVILKA---------------ARDNGDFI----------FSVKNNGSSIPED 733 + F+ G T+I+ A AR N DF +V++NG + D Sbjct: 552 VKFTPDGGTIIISARVVDRRALAPKREILARFNADFPSQIGDRCYLEVAVRDNGIGVSHD 611 Query: 734 MCKSVFNRFV---------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F++F S + Q +G GLGL+IV+ + HGG V + S Sbjct: 612 EQVKIFDKFYEIGDIRHHSSGKFKFQGKGTGLGLAIVKGMVEAHGGMVWVES 663 >gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] Length = 651 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 13/253 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 + +T+ +VT + + E R E K ++ +S+E+R+PL I+G LL Sbjct: 85 DGETLYLGTDVTRDRKNYAVMRELARTARAVSEEKMRYLATMSHEMRTPLNGILGMNGLL 144 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S L + Q Y E + + T LL L+ND+LD + + AG + L LL EV Sbjct: 145 LDSPL---DVNQRAYAEAVQQAGTALLTLINDVLDYSKIQAGHLDLEEKPFSPGALLKEV 201 Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILK 711 + +A + E I I ++ + V D RL Q+ + +N + F+++G S IL Sbjct: 202 AEILAIRADEKGIDIALLLHPDIPEELVGDPARLRQVLVNLATNGVKFTTEGGVSLEILP 261 Query: 712 AARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 D + F V++ G I D +F F + G GLGL+I Sbjct: 262 GTGSTDDDLIDHRRYSFRVRDTGKGIAADNLDRLFEEFDQGSDPSAEEGTGLGLTIARQL 321 Query: 765 INLHGGHVSISSS 777 +N GG++ ++S+ Sbjct: 322 VNAMGGNIDVTSA 334 >gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1253 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 15/276 (5%) Query: 529 SIIPLPNAQTMLT-FVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 S+ P+ + +T +V V T+ E AL E +A K+ F+ ++S+E+R+P Sbjct: 531 SVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTP 590 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + I+G T+L ++ L++ Q +Y+ S+ LL ++ND+LD + V+AG ++L + Sbjct: 591 MNGILGMTELALQTE---LSTTQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQT 647 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS 702 + + + V QSIA + I + D +L + V D RL QI + +L NA+ F+ Sbjct: 648 SFDPVETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFT 707 Query: 703 SKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756 G ++ + D F V + G IP + S+F F V + R + G GL Sbjct: 708 DTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGL 767 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 GL+I ++L G + + S +T + IP ++ Sbjct: 768 GLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPFRK 803 >gi|329847837|ref|ZP_08262865.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328842900|gb|EGF92469.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 656 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 5/241 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RAE AL + E A+ K+ F+ S+ELR+P++ I+GF LL+ + +L Sbjct: 390 DMTERRRAEEALKDAREEAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-NTLA 448 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q VE I + LL+L+ND+LD+++++AG +L + + D + EV+ +A + Sbjct: 449 PHQRAAVEQIMMAGRHLLSLINDLLDISSIEAGGAELVIQDVDVADAIYEVQTLVAPIVA 508 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + + V+ D G V ADR+RL+QI ++NA + G V + A ++ Sbjct: 509 GAGLTL-VVRDMTSGLTVSADRRRLIQILLNFIANAAKYHRSGQFVFVSARMEDDHVRIE 567 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V+++G I + +F F + R + G GLGL++ + + G + + +G Sbjct: 568 VEDDGDGIDKAAVSRLFTPFDRLGQPKRSKTEGTGLGLALSKRLVESMTGQIGYETPAKG 627 Query: 781 V 781 Sbjct: 628 A 628 >gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 423 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 132/251 (52%), Gaps = 20/251 (7%) Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 P P A +L + ++T+ + + AL + +++AD++KN+F+ ++S+E+R+PL I+G Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F L+ + S +Q +Y I+ + +LL +NDILDL+ +++G + N S + L D Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRD 263 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706 + E + KM + + ++ + V D R+ Q+ +LSNA+ F+SKG Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320 Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 + D F+ SV + G I E+ +SVF RFV Q G GLGL I + + Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376 Query: 766 NLHGGHVSISS 776 GG + + S Sbjct: 377 EQLGGEIGVRS 387 >gi|293368635|ref|ZP_06615242.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292636277|gb|EFF54762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 701 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 16/236 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L EKNE L +AD++K F+Q++S+E+R+PL I+GF+ LL L + + Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + ++ +S +L LVNDILDL+ +++G +N ++ N++ + ++ + E Sbjct: 517 KLEFSSLAQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576 Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721 +K+ ++ D QRL Q+ L+NA + KG + + + D I F Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SV + G IP D SVF RF Q G GLGL+I + G V + S Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687 >gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 483 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 14/248 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +++ ER EK +N F+ ++S+ELR+PLT + GF + L+ + S+Q Sbjct: 241 NTIENERGTLEKR---------RNDFIANISHELRTPLTAMKGFLEALQDGLVKDTESQQ 291 Query: 607 SQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Y I T LN LVND++DL ++ + L+ + L +++ +V ++ + Sbjct: 292 KYYA--IMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEIIRKVALNLQPSIESR 349 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N I + + + + D RL QIF I+ NA F+ GS I + + + Sbjct: 350 NNDIIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFTENGSITIKLEEHCKDNVCVKISD 409 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG IP K ++ RF V + + RG GLGL+IV+ + LH G +++ S TT Sbjct: 410 NGIGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQLHHGEITVESELGVGTT 469 Query: 784 INCRIPSK 791 P++ Sbjct: 470 FTIFFPTQ 477 >gi|229521204|ref|ZP_04410624.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM 11079-80] gi|229341736|gb|EEO06738.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM 11079-80] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 832 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 41/375 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +D+L++G+ V +G+I ++NPA L+ EN L G IR ++ E + L Sbjct: 262 MDNLADGLLVVDINGKISVTNPALGELFGVTENELR-GKDIRT-------FFPE-EMTAL 312 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F + E + +EL + P+ T +V R +T + Sbjct: 313 FELVKGC---EHEVYSSEIELTGRKTGKAVATPIHKMDEGDTPNICLGAVILVRDITYEK 369 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-------NSKQSQYVEY 612 E D +K F+ VS+ELR+P+T+I+GF ++K S+ + K + + Sbjct: 370 EV----DNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTERAINQ 425 Query: 613 ISASSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + + I+++ L+ND+LD+A +++G + I +++++ Q+ Sbjct: 426 VKDNIGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPLWKPQ 485 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVK 724 ++++ V + + + DR R++Q+ ++SNA+ F++ GS I AR + D I SV Sbjct: 486 DLQMVVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS--ITCTARSHADEIMVSVS 543 Query: 725 NNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 + GS I PED K +F RF + G+ +G GLGL I + ++ H G + + S EG Sbjct: 544 DTGSGISPEDQ-KKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKLGEG 602 Query: 781 VT---TINCRIPSKE 792 + T+ +P +E Sbjct: 603 SSFHFTLAIGVPDEE 617 >gi|163747187|ref|ZP_02154542.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Oceanibulbus indolifex HEL-45] gi|161379462|gb|EDQ03876.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Oceanibulbus indolifex HEL-45] Length = 511 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 31/292 (10%) Query: 526 LEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHV 576 +EY +I L A T M+T + V R E E LR+A + K+ F+ + Sbjct: 210 VEYQLIALIIAGTAAMITLAALFSYVVENRTRNESIEELRRARDAAESASRAKSEFMSVL 269 Query: 577 SYELRSPLTNIIGFTDL---LKTSKLGSLNSKQSQ--------------YVEYISASSTI 619 S+ELR+PLT +IG+ LK L L+ ++ Y + I + Sbjct: 270 SHELRTPLTIVIGYAGFLSELKRHNLAKLSPEEKPASEHFTKMGDQAELYGQRIKFAGGQ 329 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL ++NDILD ++ + L+ + LL EV + H+ + + + D + Sbjct: 330 LLTIINDILDYTNMELNDLALDKAAFDTRALLEEVVEEHNGAAHDKSATLHI--DTLPLN 387 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +ADR+R +Q+ S I+ NA+ F SK + L+A F F V++NG I E+ + +F Sbjct: 388 VIADRRRSVQVLSHIVGNALKF-SKARDIYLRARPHVDGFCFEVEDNGVGIAEEDFERIF 446 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F + +A G GLGL+I HGG +S+ S+ TT IP Sbjct: 447 EAFTQIEDADDRAEGGTGLGLAICRKLARAHGGDISVKSTLGRGTTFTVFIP 498 >gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|310641861|ref|YP_003946619.1| sensor histidine kinase vans [Paenibacillus polymyxa SC2] gi|309246811|gb|ADO56378.1| Sensor histidine kinase VanS [Paenibacillus polymyxa SC2] Length = 368 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 135/276 (48%), Gaps = 12/276 (4%) Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 ++ +D L YSI P+ +A + T +++ + L+ + E R + + KN + VS Sbjct: 96 MQKFADGNLSYSI-PVSSADELATLAKNMNTMADKLRLSLEEE--RASAKAKNDLITGVS 152 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 ++LR+PLT++IGF + ++T + + YV S L L++++ + V G Sbjct: 153 HDLRTPLTSVIGFLEYIETDRYRD-EMELRYYVNIAYEKSLTLKKLIDELFEYTRVSGGS 211 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKIL 695 + L + L LL ++ + + + ++ R++++ ++ +AD L++++ + Sbjct: 212 LPLELKPVDLGKLLTQLAEEFVPSLEQADMSYRVRIVEPVRI---LADTDELVRLYENLF 268 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753 SNA+ + G + R+ + I N G+ IP++ +F RF V + + G Sbjct: 269 SNAIRYGKDGKRFDITIGREGDEAIVICTNYGAPIPQEDVPHLFERFYRVDKSRSKETGG 328 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I +S LH G +S+ SS T R P Sbjct: 329 TGLGLAITKSITELHNGRISVRSSRRQ-TDFETRFP 363 >gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1465 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 927 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 985 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ S GS I D+G + V++NG IP++ +F Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + +NLH G + S + Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144 >gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora curvata DSM 43183] Length = 1383 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 13/262 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGF 590 +T L + S RALT + + R+A+E+ K F +S+E R+PLT I+G Sbjct: 310 RTFLRLLGQETSALISRALTYRAQQ-RRAEELAELNRAKTVFFTDISHEFRTPLTLIVGP 368 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + L+ S+LG + + +E I S+ + LV+ +LD A ++AG M+ Y L Sbjct: 369 LEELR-SRLGPADQWVRENLEIIRHSALRMTRLVDTLLDFARIEAGRMEARYQPTDLAVF 427 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709 ++ + + +R++V DR +I +LSNA+ F+ +GS TV Sbjct: 428 TADLAGVFRAAVDKAGLRLEVDCPPLPEPVYVDRGMWEKIVLNLLSNALKFTFEGSITVR 487 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 L+A ++G + V + G + E VF RF V A G G+GL++V ++L Sbjct: 488 LRA--EDGQAVLRVSDTGVGMSEQDLPRVFERFQRVKAAQTRSIEGSGIGLALVRELVHL 545 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG + + S+ TT R+P Sbjct: 546 HGGTIGVDSTLGKGTTFTIRLP 567 >gi|225852106|ref|YP_002732339.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis ATCC 23457] gi|256264384|ref|ZP_05466916.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|225640471|gb|ACO00385.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis ATCC 23457] gi|263094678|gb|EEZ18457.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326408601|gb|ADZ65666.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis M28] gi|326538322|gb|ADZ86537.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis M5-90] Length = 609 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556 >gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] Length = 2394 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 40/279 (14%) Query: 543 VNVTDSVRAE---RALTEKNEALRKAD-----------------EIKNSFVQHVSYELRS 582 V+ T++ E RAL + EA +KA K+ F+ +VS++LR+ Sbjct: 1844 VSATNAAMVESQKRALAQAREAEQKAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRT 1903 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ +IG ++LLK +KL + +Q YVE I + LL L+NDILD + ++AG MK++ Sbjct: 1904 PMNGVIGLSELLKGTKL---DKEQDNYVESIRVCADTLLTLINDILDFSKLEAGKMKIST 1960 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSN 697 + L + + EV +++ + + KV D + + D RL QIF +LSN Sbjct: 1961 VPLSLKETIREVVRALRYTHRDRGLETIEDLDKVPEDLVV---MGDPVRLHQIFMNLLSN 2017 Query: 698 AMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 + F+ KG S ++++ + SV + G IPE+ +F F S A R Sbjct: 2018 SYKFTPKGYVKVSAMVVREGKGRVRLECSVADTGIGIPEEHKSRLFRPF-SQADNSTARS 2076 Query: 753 --GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRI 788 G GLGLSI ++ I ++ GG + + S+ TT+ ++ Sbjct: 2077 YGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGTTVTFQL 2115 >gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 802 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 133/264 (50%), Gaps = 13/264 (4%) Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 N +T+L + ++T ++ E+ L+ E+ +A++ K+ F+ ++S+E+R+PL ++G Sbjct: 394 NGKTLLISIIHDITKRLKNEKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQ 453 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 ++ ++K LN + + SS LL +++DILDL+ V+ G + L LN LL Sbjct: 454 VMNSAK---LNQEHRNCISVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLE 510 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 E + + + + I + D R+ QI ++ N++ F+ G + Sbjct: 511 ESINLFKPQAEKKEVDLSYSIFPETESYYFGDEGRIRQILFNLIGNSIKFTDHGEIRVEA 570 Query: 712 AA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 A +D + F+V + G IPED + +F+ F V + + +G GLGL+IV+ Sbjct: 571 RAGPGTCQDKNNLHFTVSDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRL 630 Query: 765 INLHGGHVSISSSDEGVTTINCRI 788 I L G + I SS TTI+ I Sbjct: 631 IELMEGSIKIESSLHHGTTISFTI 654 >gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 918 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 14/242 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E R +E K+ F+ +S+E+R+PL ++G LL+ + L + Q+ VE I++S Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAACVETIASS 452 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675 L++++NDILD A +++G ++L L +LL++ + E +R+ + D G Sbjct: 453 GNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLDRG 512 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSS 729 D RL Q+ + +L NA+ F+++G + +A R+ ++SV ++G Sbjct: 513 VPRRLNGDPTRLRQVLTNLLGNALKFTAEGHVALRVQRRFDEAGRER--LLYSVSDSGIG 570 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I ++F F RR G GLGL+I + + GG + +SS T + Sbjct: 571 ISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVD 630 Query: 788 IP 789 +P Sbjct: 631 LP 632 >gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1299 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +E+K F ++S+ELR+PLT II + L + KQ ++ I ++ LL+LVN Sbjct: 793 EEMKYRFFTNISHELRTPLTLIIAPLEYLLKKEENPDTRKQ---LKTIDRNAHNLLSLVN 849 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +LD ++ L T L D+L+ + +S E NIR + AD Sbjct: 850 QLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTADSP 909 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741 ++ ++ + +LSNA F+ +G V LKA + D + V+++G IP + +F R Sbjct: 910 KIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPTEEQTHIFER 969 Query: 742 F-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F +++H+G G G+GL++ + ++ +H G +++SSS + RIP Sbjct: 970 FHQASSHKGN-TGSGIGLNVAKEYVQMHHGKINVSSSPGKGSCFTVRIP 1017 >gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 613 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D +K+ FV VS+E R+PLT++ ++ G LN +Q + +E L Sbjct: 376 LKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGELNEEQHELLEAAYEDVERLT 435 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+LDL+ +++G +++ + + +ND++ + + E +I +K + Sbjct: 436 ELVNDLLDLSKIESGKIEMEFDKVDVNDIIEKTLNPFFKQAEEKDIELKFKQSEENVFAY 495 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD ++ + S ++ NA+ ++ +G + +K R + SV +NG IP++ + Sbjct: 496 ADPSKISWVISNLIGNALRYAEQGKIEVDAEIKGRR----VLVSVADNGPGIPKEYQAKI 551 Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F +FV + + ++ G GLGL+I + I H G + S + +T + IP Sbjct: 552 FEKFVRTGNDQDEKSGTGLGLAIAKEIITAHNGRIWFDSEEGEGSTFSFYIP 603 >gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192] Length = 900 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 21/258 (8%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + R R L E N L KA+ K+ F+ +VS+E+R+PL I+GF + LK G + ++ Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438 Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + +++ + + + L L+++ILD+ ++ G + L+ S L++++ V ++ E Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYV-----CRVMEE 493 Query: 666 NIRIKVIS------DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 N R K +S DG V D RL Q+ ++ NA+ F+ +G + + G+ Sbjct: 494 NARRKGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTEEGGVRVRVGCVEEGEG 553 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V++ G IPE+M + VF FV RR G GLG++I + L GG V + Sbjct: 554 RWIEVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGGDVWL 613 Query: 775 SSSDEGVTTINCRIPSKE 792 S T + RIP E Sbjct: 614 ESEVGKGTRVWFRIPCVE 631 >gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ ++S+ELR+PL ++GF+D+++ G L+ K ++Y + I + + LL+L+ D+L Sbjct: 329 KTRFLANMSHELRTPLNAVLGFSDVMRQRLFGPLSPKYAEYADNIHEAGSHLLDLIGDVL 388 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D++ ++A +L+ ++++ + + + + ++ D L + ADR+ L Sbjct: 389 DVSKIEAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPL-AVEADRRAL 447 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI +LSNA+ F+ G +V L V + G I K + F Sbjct: 448 KQITLNLLSNAIKFTPSGGSVTLTLETIGPYLEMVVADTGVGIAARDLKRLGRPFEQAGE 507 Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 QR +G GLGLS+V + LHGG +SI S+ T + R+P Sbjct: 508 ADQRAKGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550 >gi|91773227|ref|YP_565919.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712242|gb|ABE52169.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 607 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 121/237 (51%), Gaps = 2/237 (0%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N L D +K+ F+ ++S+ELR+PL I GF L+ + G L+ +Q + ++ + Sbjct: 370 LAEANYQLESLDRMKDEFLANLSHELRTPLNVIKGFGGLMSEERFGKLDERQRKAMDAVM 429 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++TIL+ LV +L + +V A ++K +++ I + L +A+ + + + +K+ Sbjct: 430 RNTTILIELVESLLYITSVQADMIKYSFAQINVESSLERAISLVASNIEKKRLMLKIDVK 489 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D+ L ++F +L NA+ F+ TV + R ++K+ G + D Sbjct: 490 KDLPYIRGDKVYLEKVFVHLLGNAIKFTPASGTVSVFMDRTRDSLHIAIKDTGVGVASDQ 549 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F++F + + + GVG+GL I + ++ H G + + S + T I+ +P Sbjct: 550 IPYMFHKFRQLDGSLTRKYGGVGIGLYICKHIVDAHKGKIWMESEEGTGTDIHIILP 606 >gi|30697334|ref|NP_176808.3| ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response regulator [Arabidopsis thaliana] gi|1352397|sp|P49333|ETR1_ARATH RecName: Full=Ethylene receptor 1; Short=AtETR1; AltName: Full=Protein ETHYLENE RESPONSE 1; AltName: Full=Protein ETR1 gi|12324402|gb|AAG52169.1|AC020665_14 ethylene-response protein, ETR1; 36345-39013 [Arabidopsis thaliana] gi|902360|gb|AAA70047.1| ETR1 [Arabidopsis thaliana] gi|332196376|gb|AEE34497.1| ethylene receptor 1 [Arabidopsis thaliana] Length = 738 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 492 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 550 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570 >gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC A4] Length = 2312 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RALT+ +A +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1824 KRALTQARDAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1883 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1884 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1940 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711 +++ + + D V D RL QIF +LSN+ F+ KGS TV K Sbjct: 1941 VRALRYTHRDRGLETIEDLDEVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVSAK 2000 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 R+ + SV + G IP++ +F F S A R G GLGLSI ++ I Sbjct: 2001 VTREGKGRVRLECSVSDTGIGIPDEQKPRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2059 Query: 766 -NLHGGHVSISSSDEGVTTI 784 ++ GG + + S TT+ Sbjct: 2060 EDVLGGAIWLDSVPGAGTTV 2079 >gi|326565978|gb|EGE16139.1| two-component system sensor histidine kinase [Moraxella catarrhalis 103P14B1] gi|326575373|gb|EGE25298.1| two-component system sensor histidine kinase [Moraxella catarrhalis 101P30B1] Length = 988 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFSQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|302186340|ref|ZP_07263013.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. syringae 642] Length = 1003 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G N + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVGDTHFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +FSV ++G Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFSVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSVDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|254784795|ref|YP_003072223.1| two-component hybrid sensor and regulator [Teredinibacter turnerae T7901] gi|237684045|gb|ACR11309.1| putative two-component hybrid sensor and regulator [Teredinibacter turnerae T7901] Length = 975 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + +L +++ K F+ V++ELR+PL ++IGF+ +L S+ +SK+ + VE I Sbjct: 315 LLKSHRSLEESNRFKTEFLASVTHELRTPLNSVIGFSRVLLKSRSNEQSSKEHRAVEAIF 374 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +ST LL ++NDILDL+ ++ G + L S +L+D++ EV + + + + ++++ Sbjct: 375 RNSTHLLGVINDILDLSKIETGSITLEKSEFLLSDVIQEVFEMLEPLADKKQLTFQLLNY 434 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI-FSVKNNGSSI 730 + V+D +L Q+ + SNA+ ++ +GS VI D+ G+ + SV++ G I Sbjct: 435 ARNLRLVSDMAKLRQVLINLCSNAVKYTERGSVVICIERADHEELGEVVKISVRDTGIGI 494 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 E +F F A G GLGL I + + GG + S Sbjct: 495 EESEKNKLFVEFSRTEAAINSGAEGTGLGLMISAKLVQVLGGAIDFDS 542 >gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1051 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 20/247 (8%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A A+ K+ F+ ++S+ELR+PL I+GFT LL+ + +L +K +Y++ ++ S Sbjct: 558 DAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKHQEYIKIVNQSGQH 615 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL L+ND+L+++ ++AG + N + + L ++ + K + + + + Sbjct: 616 LLELINDVLEMSKIEAGRITCNPTEFDIKRCLPAIQVMLQLKAESKGLTLNFQVEESVPK 675 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------FIFSV 723 FV D +L Q+ ++SNA+ F+ G V L+ + D +F + Sbjct: 676 FVRTDESKLRQVLVNLISNAIKFTQDGE-VSLRVSVGGVDEDLGLSDEDWVSNTYLLFEI 734 Query: 724 KNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + +F F + A R ++G GLGL I + F+NL GG + +SS + Sbjct: 735 IDTGCGIASEEINDLFQAFKQTKAGRESQQGTGLGLVISQRFVNLMGGEIKVSSKPGEGS 794 Query: 783 TINCRIP 789 + +IP Sbjct: 795 CFSFQIP 801 >gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 673 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 18/247 (7%) Query: 545 VTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + + + E+AL+E E A + K+ F+ ++S+ELR+PL IIG++++L+ Sbjct: 150 IVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTPLNAIIGYSEILRED 209 Query: 598 KLGSLNSKQSQYV---EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + +Q ++ + I + LL L+ND+LDL+ +++G M L + L+ L+++V Sbjct: 210 ---AEDLEQEDFIPDLKKIDTAGRHLLGLINDVLDLSKIESGKMDLLIEPVNLDMLIDKV 266 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 ++ + + +K+ LG D +L QI +LSNA F+ +G I Sbjct: 267 LGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFTEQGIIEFQIYHQ 326 Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 GD IF V +NG + E + +F+ F RR G GLGL+I + F + G Sbjct: 327 INTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGLGLTITKDFAEMMG 386 Query: 770 GHVSISS 776 GH+ ++S Sbjct: 387 GHIKVAS 393 >gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 762 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 31/358 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500 ++EG+AV DGR+ L NPA + L++ +R+ P I N C + Sbjct: 425 MAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEH-------- 476 Query: 501 AAIITSFDDERKSLQGTL-ELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 ITS + R Q T+ E+ D+ L+ ++ PL + F V SVR A Sbjct: 477 ---ITSMGENRD--QATVREVDLDARGKKLKVTLAPLVDGDGH--FAGVVMSVRDVTAEE 529 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E D +K F+ VS+EL++PLT+I G L+ G + + + + Sbjct: 530 E-------VDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRG-FTDVEKELLGVCLRN 581 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L+ LVNDILD+A +++G M+ S +L+ + + E+ + + Sbjct: 582 TERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSAD 641 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L + D RL Q+ + +++NA+ FS +G+ V + A + + SVK+ G I Sbjct: 642 LPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQSDNFVAVSVKDRGREIQWADRG 701 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF + + R Q G GLGL+I + + H G + S G +P E Sbjct: 702 KLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRIFYSEGIGGGNVFTFTVPIHE 759 >gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1141 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 150/322 (46%), Gaps = 29/322 (9%) Query: 468 KTEENR--LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525 K ENR P T R + + Y + IT D E+++L+ T LL +S Sbjct: 497 KGMENRDYTDPETS-RRMYRAFNETYRTGRPANFLGYRITRKDGEQRNLELTASLLKNSE 555 Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 E S +VT RAE AL + A+ K+ F+ ++S+E+R+PL Sbjct: 556 GEPSGF-------RGVIRDVTGRKRAE-ALHREKLTAEAANRAKSQFLANMSHEIRTPLN 607 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 IIG T+L + + ++SK ++ I S LL ++NDILD + ++A +++L + Sbjct: 608 GIIGMTEL---AMMRDMDSKHRNILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISF 664 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMD 700 ++ V ++ + + + I V I DG +G D RL QI ++ NA+ Sbjct: 665 DPASVVENVVKAFVHRAEQKGLGITVSMERDIPDGVIG----DPGRLRQILINLVGNAVK 720 Query: 701 FSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 F+ KG I + A D I F+VK+ G IP+D K++F F R+ G Sbjct: 721 FTQKGEIGIEARVAEDLDKRIKLRFAVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGT 780 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLG +I + L GG + + S Sbjct: 781 GLGTTISKHLAELMGGEIGVES 802 >gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 762 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 31/358 (8%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500 ++EG+AV DGR+ L NPA + L++ +R+ P I N C + Sbjct: 425 MAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEH-------- 476 Query: 501 AAIITSFDDERKSLQGTL-ELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 ITS + R Q T+ E+ D+ L+ ++ PL + F V SVR A Sbjct: 477 ---ITSMGENRD--QATVREVDLDARGKKLKVTLAPLVDGDGH--FAGVVMSVRDVTAEE 529 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E D +K F+ VS+EL++PLT+I G L+ G + + + + Sbjct: 530 E-------VDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRG-FTDVEKELLGVCLRN 581 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L+ LVNDILD+A +++G M+ S +L+ + + E+ + + Sbjct: 582 TERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSAD 641 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L + D RL Q+ + +++NA+ FS +G+ V + A + + SVK+ G I Sbjct: 642 LPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQSDNFVAVSVKDRGREIQWADRG 701 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF + + R Q G GLGL+I + + H G + S G +P E Sbjct: 702 KLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRIFYSEGIGGGNVFTFTVPIHE 759 >gi|283851563|ref|ZP_06368843.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573097|gb|EFC21077.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 535 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 13/217 (5%) Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +T++ FV ++TD + +E+ L + E +A+ K+ F+ ++S+E+R+P+ ++G TDL Sbjct: 107 RPKTLIAFVEDITDRIESEKRLRQAKEEAEQANRAKSEFLANMSHEIRTPMNGVMGMTDL 166 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L S L+ +Y++ I S T LL ++NDILDL+ +++G L+ L D L Sbjct: 167 LLMS---GLSGPAREYLQLIKQSGTSLLQIINDILDLSKIESGKFVLDCQAFSLRDSLET 223 Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + + + VI+ + D+ RL Q+ + ++ NA+ F+ KG V L Sbjct: 224 ILHPLRLGARDKGLDFRHVIAADAPDRLLGDKGRLGQVLTNLVGNAIKFTEKG-MVRLSV 282 Query: 713 ARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRF 742 D F+F V+++G IP + +F F Sbjct: 283 EPDPEAALPQTVRFLFRVQDDGIGIPAERLTDIFEPF 319 >gi|257094787|ref|YP_003168428.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047311|gb|ACV36499.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 709 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 17/264 (6%) Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYE 579 +Y+ I LP A T + +F + D+VR+ + +L + EA A+ K+ F+ + +E Sbjct: 188 DYAAI-LPAAGTDEIGDLVRSFGEMRDAVRSYDISLNDAREAAEAANHAKSDFLSMMGHE 246 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 LR+PL ++G LL L ++ Y I S LL L+NDILDL+ +++G ++ Sbjct: 247 LRTPLNGMLGMAQLLLMPNL--TERERQDYARIILTSGQSLLTLLNDILDLSKIESGKLR 304 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698 + + +DL+ E + + + G + +D QRL Q+ SK++ NA Sbjct: 305 IESAEFDPDDLIRETLALFSASATNKQLVLAGQWRASCGQHYRSDPQRLRQMLSKLIGNA 364 Query: 699 MDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F++ G V+ ++ ARD + FSV + G IP + +F F R+ Sbjct: 365 IKFTAHGKIVVEGVEVARDADSAVLEFSVSDTGIGIPAEKLDLLFRPFSQADSSSTRKYG 424 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGLSIV S GG + S Sbjct: 425 GSGLGLSIVRSLTERMGGDAGVDS 448 >gi|254693343|ref|ZP_05155171.1| sensor histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 609 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQYVEYISASSTILLNLVND 626 K + VS+ELR+PL +IIGF+D+L T ++GS + +Q +Y I S LL LVN Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDML-THEIGSKLASDRQREYAGLIHQSGHYLLELVNA 387 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LD + ++ G + + V D + + + + + +G VADR+ Sbjct: 388 VLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRA 447 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNR 741 + QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + Sbjct: 448 VQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTP 506 Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 507 FVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556 >gi|260754346|ref|ZP_05866694.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757565|ref|ZP_05869913.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761390|ref|ZP_05873733.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883371|ref|ZP_05894985.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260667883|gb|EEX54823.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671822|gb|EEX58643.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674454|gb|EEX61275.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872899|gb|EEX79968.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] Length = 532 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479 >gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115] gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 1416 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 8/257 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 ++ +VT +AE+ L N L++++ F S++L+SPL I + +L++ Sbjct: 1165 AVIAMQDVTARRQAEQELQRVNVELQRSNADLEHFAAVASHDLKSPLRTIRSYLELIERR 1224 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 G L+ + +Y+ + + ++ + L++D+L A V + N + + ++ EV Sbjct: 1225 LTGQLDERSMRYMGFATEAAARMDTLIDDLLAYARVG---RQRNITRVEPQRVVQEVLGG 1281 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD 715 + + E +I+V G L AD +L Q+F ++ NA+ F +G V++ A RD Sbjct: 1282 LTASIQERGAQIRV---GDLMPVQADESQLRQVFQNLVGNALKFQPEGRVPEVMIDATRD 1338 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +F V++NG I E+ + VF F + + G GLGL+IV I H G + ++ Sbjct: 1339 GRYVLFQVRDNGIGISEEYYERVFALFQQLHGKSEFPGSGLGLAIVRKIIEEHDGRIWLT 1398 Query: 776 SSDEGVTTINCRIPSKE 792 S TT + +PS + Sbjct: 1399 SVVGEGTTFHFTLPSSD 1415 >gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1] gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1] Length = 558 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521 >gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 590 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 31/353 (8%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 ++++GV +G++ NP R + EE G + +N + ++ N D+ Sbjct: 256 NMADGVIALNDEGQVIHINPVARQMLSLEE-----GINGQNFSLELNKLLN----IDMKQ 306 Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 + FD+ TL D++L+ PL ++ + V + + L EA Sbjct: 307 LLNNDFDNSE-----TLIKTKDAILKSIYAPLRRENRIVGHIFVFQDITKQHRL----EA 357 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 +RK FV +VS+ELR+PLT I + + L G+L + Q+ I+ + Sbjct: 358 MRK------EFVANVSHELRTPLTTIKSYAETLLD---GALEEAEISRQFTSVINDEADR 408 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV+D+L+L+ +D K + I + +L V + + IK +L Sbjct: 409 MTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEELPE 468 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD ++ Q+F ILSNA ++ +G + + + K+ G IP++ +F Sbjct: 469 VFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEKMVKVTFKDTGVGIPKEDLPRIF 528 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF V + G GLGLSI + HGG +SISS T++ +IP+ Sbjct: 529 ERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIPA 581 >gi|319794260|ref|YP_004155900.1| histidine kinase [Variovorax paradoxus EPS] gi|315596723|gb|ADU37789.1| histidine kinase [Variovorax paradoxus EPS] Length = 493 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L +AD+ K F+ +++ELR+P+ + +L L Y + + ++ Sbjct: 122 LSEADKRKTEFLATLAHELRNPMAPLSTALAILTRKPL--TPEAALPYYQLMGRQIDHMV 179 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 LVND+++++ + G ++L ++++ ++ + + M R++V +D L + Sbjct: 180 RLVNDLMEVSRITRGKIELQLGELMVDQVIRDAVELSRPLMDAGRHRLEVHAADAPL-AV 238 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL Q+FS +L+NA ++ +G + + RD + + V++NG+ +P DM S+F+ Sbjct: 239 EGDGVRLTQVFSNLLNNAAKYTPEGGRIDVFVERDGANAVVRVRDNGAGLPRDMLASIFD 298 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F VS R + G+G+GL++V+S + LHGG VS S G Sbjct: 299 MFVQVSGTARAAQGGLGIGLTLVKSLVELHGGTVSAKSEGLG 340 >gi|311032628|ref|ZP_07710718.1| sensor histidine kinase [Bacillus sp. m3-13] Length = 462 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 10/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R++ + L + D + F+ +VS+ELR+P++ + G+++ L+ + ++ E Sbjct: 225 RSINTMSSNLDEVDRNRREFLGNVSHELRTPISYLKGYSEALEEGII-----PIEKFAET 279 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + + LV+D+LDLA ++ +N ++L +L+ EV K+++ N+ +V Sbjct: 280 VKKETDRMERLVHDLLDLAQLEGDSYPMNKEPVILAELVKEVLDRFRLKLNDKNLIAEVQ 339 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D G V D RL Q+ +LSNA+ FS+ T+ + I +++ G IP Sbjct: 340 LDE--GVVVNGDYGRLDQVIDNLLSNAIKFSANNRTIRISVVEVKTMGILKIEDEGVGIP 397 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ +F RF V A + G GLGLSIV+ IN H G + I S T + IP Sbjct: 398 EEDVPYIFERFYRVEKARTRKSGGTGLGLSIVQQIINKHEGKIHIDSKRGKGTVVTVEIP 457 >gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 683 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 15/253 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD +R + EK A+ A + K+ F+ H+S+E+R+P+ IIG T L S + Sbjct: 291 DVTDLLRTQH---EKQAAV-IASQAKSEFLAHMSHEIRTPMNGIIGLTHLALQS---DPS 343 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ I +S+T LL ++NDILDL+ ++A M L + ++L+ V SI + Sbjct: 344 PEHKDYLHKIRSSATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLD 403 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I ++D D RL Q+ +LSNA+ F+SKGS V L+ R+N D Sbjct: 404 QKGLEYICEVADDVPLKLWGDGLRLKQVLLNLLSNAVKFTSKGS-VRLRIRRENSDSQDL 462 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 F V + G I + + +F+ + +NA +R G GLGLSI + L G++ S Sbjct: 463 LHFMVTDTGMGISREYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCES 522 Query: 777 SDEGVTTINCRIP 789 +T + IP Sbjct: 523 EPGNGSTFHLSIP 535 >gi|299145321|ref|ZP_07038389.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298515812|gb|EFI39693.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 674 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 431 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 488 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ + + Sbjct: 489 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSLDNQ 548 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ +G T+ + IFSV + G Sbjct: 549 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 608 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 609 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTG 659 >gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 423 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627 K++F+ +S+ELR+PL ++GF+++L T G L N + YV I + T LL L++DI Sbjct: 177 KSAFLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALIDDI 236 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQ 685 L+L+ +D G M + + L+ L V ++ E + R +V D L D Q Sbjct: 237 LELSRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPL--LQGDAQ 294 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 L Q+ + +LSNA+ + G V+L A +G V + G IP + + F Sbjct: 295 SLTQMLTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPFDP 354 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 R G GLGL IV+ + +HGG + ++S GV T Sbjct: 355 PDSTIARNSCGTGLGLPIVKRLVEMHGGRMELTSQ-PGVGT 394 >gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 615 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 57/334 (17%) Query: 442 HLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 H EG+ +G I + FRS +TE+ I + A C YY F Sbjct: 312 HFLEGI----RNGEIFDFISDTFRSGSETEQ-------KIFAVKANCEDYY--------F 352 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560 I+T+ D +L G + + F NVT Sbjct: 353 NIIVTTVKDNNANLSGIIAV---------------------FQNVTH------------- 378 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 L++ ++I+ F+ +S+E ++PLT+I+ TD+L +G+LN Q Q ++ I S L Sbjct: 379 -LKELEKIRTDFIATISHEFKTPLTSIVMGTDILSDEGVGNLNDDQRQIIKAIREDSDRL 437 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LVND+L+L +++G ++D++ + + + + D + Sbjct: 438 TKLVNDLLELTRIESGKAIFKIKEYAIDDIIECAVKPFYQIAEQQDKTLYFKCDEDMPRV 497 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739 +AD +++ + + ++SNA+ +++ G + + A+ D + ++ +VK+ G IPE+ ++F Sbjct: 498 IADFEKITWVLNNLISNALKYTNAGDEISVIASVDKENTMYVTVKDTGLGIPEEYIDNIF 557 Query: 740 NRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHV 772 +FV + RG GLGL++V+ I H G + Sbjct: 558 EKFVQVKDADFEVRGTGLGLAVVKEIIEAHHGRI 591 >gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] Length = 587 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 170/355 (47%), Gaps = 36/355 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV +G + ++NP F W E+ + R+ NE L Sbjct: 263 MADGVITLNRNGEVLITNPPADRFLQAWYYEQGQ-------RDDLLPLPPQVNE-----L 310 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F +T +++ ++++ L+ + ++ + PL N + + +V R +TE+ Sbjct: 311 FKKAVT--EEKEQAIEMALQGRNWVIV---MTPLYNGKV------IRGAVAVLRDMTEE- 358 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ D+++ F+ +VS+ELR+P+ + G+++ + + + + ++ + + I S Sbjct: 359 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-VDDIAATDEEKKELAKVIYDESLR 414 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + LVND+LDLA ++AG + L++ + L + + E + + V ++D + Sbjct: 415 MGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMNDELIV 474 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 SF D R+ Q+ + ++ NA+ + +G V + D SV+++GS IPE+ V Sbjct: 475 SF--DPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEEVVRISVQDSGSGIPEEDLPFV 532 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF A R G GLGL+I ++ + H G +++ S TT +P K Sbjct: 533 FERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLPLK 587 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 15/253 (5%) Query: 551 AERALTEKNEALRK-----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 AE L + LRK + K+ F+ +S+E+R+PL I+G +LL S +L+S+ Sbjct: 1292 AELELATREAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSES---ALSSE 1348 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + +E + +LLNLVN+ LDLA ++AG + L Y+ L L+ E+ Q Sbjct: 1349 QQRLMEISRNAGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHK 1408 Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSV 723 +R++ ++ FV D RL QI +LSNA+ F++ G TV L+ +R D F V Sbjct: 1409 GVRLESEMALEVPRFVMGDPDRLRQILVNLLSNAIKFTNSG-TVSLQMSRGVADRTFFKV 1467 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780 + G I + +F+ F R+ G GLGL+I + GG + + S G Sbjct: 1468 SDTGVGIAAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGVG 1527 Query: 781 VT-TINCRIPSKE 792 T ++N +P E Sbjct: 1528 STFSVNLPLPRAE 1540 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 120/238 (50%), Gaps = 14/238 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD + ++L E A A + K++F+ ++S+E+R+P+ ++GFTDL + G L+ Sbjct: 378 DITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDL---ALRGDLS 434 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K Y+E +S L+ ++NDILD + +D G ++L+ L+ LL + + + Sbjct: 435 PKVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAA 494 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDN 716 ++ + + ++ + D RL QIF ++ NA+ F+ G + L+ R Sbjct: 495 DHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFTKNGFITVRAQPELLEGHRVR 554 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 SV ++G I + +F FV RR G GLGLSIV+ ++L G V Sbjct: 555 --LTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSV 610 >gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 828 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 158/345 (45%), Gaps = 23/345 (6%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +SEGV DGRI N + L E + G HI + + + DG + A Sbjct: 158 MSEGVFEVTADGRITYVNSSALLLTGLPEKSVY-GVHIAEL------FPHRDDGGRMRVA 210 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNE 560 + + + + +L+ + SI+PL + + + ++T+ R E+AL E E Sbjct: 211 LDRLGEVPLTMGEDSPLVLNHRQVSVSILPLNDETSSAAVILTDITERKRVEQALIEAKE 270 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A + K+ F+ ++S+E+R+P+ +IGFTD+L + L Q Y S L Sbjct: 271 RAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDT---DLTDDQRDYAMTAKKSGESL 327 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLN-DLLN-EVKQSIATKMHENNIRIKVISDGKLG 678 L+L+NDILD + ++AG +LN+ I + +LL+ +V + I ++ + I + Sbjct: 328 LSLLNDILDFSKIEAG--ELNFEKIDFDPELLSYDVCEVIRPRVESKPVEILCHVGADVP 385 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPED 733 SFV D R Q+ ++SNA F+ G S + D F +V++ IPED Sbjct: 386 SFVKGDPGRYRQVLVNLMSNATKFTESGEIELSLDVEAEEADRIKFHATVRDTAMGIPED 445 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+ F R+ G GLGL++ G V + S Sbjct: 446 KLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVES 490 >gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 1150 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 5/217 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K+ F+ ++S+ELR+PL IIG++++L+ + Q +E + + LL ++ Sbjct: 917 ANRVKSQFMANMSHELRTPLNAIIGYSEMLQEEYRSDPQGQIYQDMERVQKAGRQLLQII 976 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD+A +++ +L + + +V QS+ +H+N + V D +G+ +DR Sbjct: 977 NDILDMADLESQTAQLQAESFDICSEARQVAQSVQAAIHKNGNTLDVRCDENIGTMYSDR 1036 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741 Q++ Q+ +L+NA F+ G + +A + V++ G I + + +F Sbjct: 1037 QKIRQVLIHLLNNAGRFTENGQVALTVSAEQRHSEPWVLLRVRDTGIGIDPSIHEQIFEP 1096 Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 F R G GLGLSI F + GG +++ S Sbjct: 1097 FTLGDSSSTRLYGGSGLGLSISRRFCEMMGGAITLQS 1133 >gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS and HAMP domains [Synechococcus sp. PCC 7002] Length = 1280 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++TD V AE L E +A+ K+ F+ +S+E+R+P+ +IG +LL+ + Sbjct: 703 TITDITDKVEAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAVIGMAELLRDT--- 759 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L ++Q ++++ I S + LL ++NDILD + +++G +L L L ++T Sbjct: 760 DLTAQQQEFIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQTCLENCLDLMST 819 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + I + I D + + D R QI +L NA+ F+++G + + A Sbjct: 820 RAIAKPIYLSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNRGDVSLWVQKVPTATG 879 Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 +GD + F++ + G IP +F F RR G GLGL I + + L GG Sbjct: 880 DGDQVCLRFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGG 939 Query: 771 HVSISS 776 + + S Sbjct: 940 KLWVES 945 >gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 545 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 131/257 (50%), Gaps = 20/257 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ E ++ L + D +K+ F+ ++S+ L++PLT I +L+ G ++ +Q + + Sbjct: 280 RSFNEMSKKLEQLDTMKSDFISNISHNLKTPLTAIKEANELMLDKIAGQISFEQMKLLNI 339 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I ++ L+ ++ND+LD++ ++AG+M+ N+ + D+++E + + + I I+ Sbjct: 340 IKGNTLRLILMINDLLDISRIEAGLMRYNFQPAQIRDVISESIEDVRFLTEKKGIFIQYE 399 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------ 720 D + + DR ++ QI +LSN++ F+ G + +KA + + Sbjct: 400 DDSLVPHVLLDRGKIAQIMDNLLSNSIKFTPTGGVITIKAFVVDASMLSPIFAQQGKLNN 459 Query: 721 ------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 S+ + G IP++ S+F++F V N +G GLGL I + + HGG++ Sbjct: 460 IQSFLQISISDTGIGIPKEHQNSIFDKFQQVVNKRESGIKGTGLGLFIAKHIVEDHGGNI 519 Query: 773 SISSSDEGVTTINCRIP 789 + S+ +T + +P Sbjct: 520 WLESNCGSGSTFHFTLP 536 >gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon] gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon] Length = 558 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE+AL E +A A+ K+ F+ ++S+E+R+PL IIG T+L+ + L Sbjct: 404 DITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDT---DLK 460 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y+ + S LL ++NDILD + ++AG + ++ L D L + +S++ + H Sbjct: 461 VAQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAH 520 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGD 718 + + +S D R+ Q+ +L NA+ F+ +G V + + Sbjct: 521 RKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQVT 580 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I +D +S+F F RR G GLGL+I + L G + + S Sbjct: 581 LHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWVES 640 >gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] Length = 1521 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T AE L E +A++ K++F+ ++S+ELR+P+ I+G LL+ + L+ Sbjct: 745 DITQQREAENILKTARETAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 801 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ+ Y A++ LL+L+NDILD + +++G M L ++ +L ++ +++ + Sbjct: 802 RKQADYAVKSEAATRTLLHLLNDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLK 861 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720 + + D L FV D RL QI + + NA+ F+ G V+ +K + + Sbjct: 862 VKKVEVLFDIDPALPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVT 921 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +S+F+ F RR G GLGL I + F+ L GG +++ S Sbjct: 922 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLALES 981 >gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] Length = 2041 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 4/233 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + LR A K+ F+ +S+ELR+PL II +D L G +N K +V+ I SS Sbjct: 265 QELRDAVTRKDQFMSLMSHELRTPLNGIIQLSDALVRGAGGEMNPKGQHFVKTIKNSSNH 324 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLN++NDILD+A + G + + + L + V +A + ++ I+ D Sbjct: 325 LLNIINDILDVAALKEGKLTIKHELCSLAKAVEHVVDIVA-PLARKDVAIERSVDPHTPL 383 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 +AD R++QI + NA+ F+ +G + + + D V + G IP + + Sbjct: 384 IIADFSRVIQILYNLAGNALKFTHRGRVCVRVSPSADGSSVTLQVADTGIGIPPERISGI 443 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F R+ G GLGL+IV+ + H G + + S++ TT +P Sbjct: 444 WGAFEQVDMSVTRKYGGTGLGLNIVKQLVEAHEGKIEVQSAEGRGTTFTVTLP 496 >gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae FF5] Length = 654 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] Length = 474 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 28/347 (8%) Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519 SL + + L+ G +R + A T + DG +F +I ++ ++L+G Sbjct: 128 SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 187 Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT----------EKNEALRKADEIK 569 +L +IP+ A + V R+ R L+ E+ E + K Sbjct: 188 ML--------VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSK 239 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDIL 628 + F+ +VS+ELR+PL +IIGF++++++ LG + S++ +Y+ I S LL+L+NDIL Sbjct: 240 SQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDIL 299 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D + +A + + + L +++ + + + + +K + +AD +R+ Sbjct: 300 DFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMK 359 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSN 745 Q+ +LSN++ F+ +G V L A I + + G I +D+ K SVF + + Sbjct: 360 QVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADS 418 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 H + G GLGL + + + L G SI S T + P K+ Sbjct: 419 THSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 465 >gi|254255395|ref|ZP_04948711.1| Response regulator receiver [Burkholderia dolosa AUO158] gi|124901132|gb|EAY71882.1| Response regulator receiver [Burkholderia dolosa AUO158] Length = 739 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 157/353 (44%), Gaps = 44/353 (12%) Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFD 508 GP+ RI L+N F +L T I R +A+ G D AI + D Sbjct: 237 GPEHRIVLANHRFSALCGR--------TDIVDRPLASVLP-------GGDT-PAIARALD 280 Query: 509 DERKSLQGTL------ELLSDSVLEYSII--PLPNAQ---TMLTFVNVTDSVRAERALTE 557 D R S + T D Y + P P A +++ V VT+ V A L Sbjct: 281 DARTSGRSTTIGEHRDRASGDGARVYRLHFNPQPQADGFGVIVSAVEVTEHVAAREKLVA 340 Query: 558 KN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 N + LR+A+ K+ F+ + +ELR+PLT I +L++ + Sbjct: 341 ANAERDRLLDELREANHAKDQFLAVLGHELRNPLTPISLALELIRNRD----GHATPNEL 396 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ L++D+LD++ + G ++L + L D+++ + + + + R+ Sbjct: 397 AIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEVVRLADIVDRAVEVASPLLEQRRHRLH 456 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729 V + L D RL Q+ + +L+NA ++ G + L+ AR D D + V++NG+ Sbjct: 457 VDAALDLHCH-GDPVRLSQVVANLLTNAAKYTPPGGEIALRVARGDTDDVLVEVRDNGAG 515 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP D S+F F + G+G+GL++V SF+ LHGG V S G Sbjct: 516 IPRDRLDSIFEPFFRIDGGSSHMHGGLGIGLALVRSFVRLHGGTVRADSEGLG 568 >gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 847 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 18/243 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V A R L + +A K++F+ +S+E+R+P+ +IG T LL+ + L + +Q Q Sbjct: 313 VVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDL---DERQRQ 369 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y E +S+++ L+ ++NDILD + V+AG + L L ++ EV + IA + Sbjct: 370 YAEGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLE 429 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD------ 718 + +L + + D RL Q+ + SNA+ F+++G ++ L+A+ +G Sbjct: 430 LLAYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASLEASLQDGPEAGAEA 489 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V + G + E + +F F RR G GLGL+I E + GG + Sbjct: 490 GVVVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHLVTAMGGQIG 549 Query: 774 ISS 776 + S Sbjct: 550 VDS 552 >gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1134 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 12/244 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER + EAL + D K +F +VS+ELR+PLT ++ + L + + + +Q + Sbjct: 342 AER---RRAEALAEIDRAKTTFFSNVSHELRTPLTLMLSPVEELLAQERTAADPEQRHLL 398 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + + L LVN +LD + ++AG ++ Y L E+ + + M + + + Sbjct: 399 ELVHRNGLRLQRLVNTLLDFSRIEAGRVRAVYEPTDLAHYTAELAANFRSAMEKAGLEFR 458 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-FSVKNNG 727 V G+L + V DR +I +LSNA+ F+ GS TV L+ A G+F+ V++ G Sbjct: 459 V-ECGELSAPVYVDRDMWEKIVLNLLSNALKFTFTGSVTVRLRTA---GEFVELVVQDTG 514 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP VF RF VS A G G+GL++V+ + LH G + + S TT Sbjct: 515 IGIPSAELPRVFERFHRVSGAKGRTIEGTGIGLALVQELVKLHAGSIEVESELSRGTTFQ 574 Query: 786 CRIP 789 ++P Sbjct: 575 VKLP 578 Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 5/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E + NE LR+A+ F S++L+ PL + ++ LL L+ Sbjct: 883 DITERKKQEELIRRSNEELRRANADLEQFAYSASHDLQEPLRQVAIYSQLLGRKYGSRLD 942 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV-LNDLLNEVKQSIATKM 662 K S+Y+ Y + + L++D+L + V N L V++++AT + Sbjct: 943 GKASEYLTYCIEGAQRMEMLISDLLAYSQATKTSNPSAEPEFVDANGALEAVRKNLATTI 1002 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF 721 E VI+ L D L+ +F ++SNA+ + K V + A +D+G + F Sbjct: 1003 EETR---AVITAAHLPVVHGDGVPLMHVFQNLISNALKYRGKERPDVRIWAEQDSGWWRF 1059 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V++NG IP+ + VF F R G G+GL+I + + +GG + + S Sbjct: 1060 AVQDNGIGIPKPYQEQVFGIFKRLHDRKDYPGTGIGLAICQRVVERYGGKIWVESDGRQG 1119 Query: 782 TTINCRIP 789 +T +P Sbjct: 1120 STFFFTLP 1127 >gi|330806709|ref|YP_004351171.1| alginate biosynthesis sensor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374817|gb|AEA66167.1| Putative alginate biosynthesis sensor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 596 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/340 (23%), Positives = 154/340 (45%), Gaps = 23/340 (6%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +D + +G+ + G+++ NP + +E RL G + R + + Sbjct: 264 VLDSIDDGLLMIDRQGQLEHLNPVAQRQLGWDEERLGQG-----LGEALGRLELDEE--- 315 Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556 ++ ER ++E+ +S VL YS+ P+ + Q +L V V V +RA Sbjct: 316 -LHLVLRGGSLERAPEDLSIEVDGESRVLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF- 373 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + +++ FV S+ELR+P+T + LL+ S S+++ + ++ Sbjct: 374 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFSEESREADLLNTVTEE 424 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L+ L+ND+L+ + G+ KL + +++LL + A + I + V G Sbjct: 425 MQRLMQLINDLLNFSRYQNGLQKLTLAPCSIDELLEAARLRFAEQAQTKGIELLVAIQGP 484 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L AD +L ++ ++ NAM +++ + L+A R I SV++NG I Sbjct: 485 LPRLHADAAQLDRVLDNLIDNAMRHTAENGQIRLQARRHGERVIISVEDNGEGIAYGQQG 544 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F FV + + G GLGL++ + + LHGG + + S Sbjct: 545 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYS 582 >gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 2250] gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 917 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497 >gi|153828803|ref|ZP_01981470.1| sensor histidine kinase FexB [Vibrio cholerae 623-39] gi|148875679|gb|EDL73814.1| sensor histidine kinase FexB [Vibrio cholerae 623-39] Length = 785 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVKVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9] gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9] Length = 680 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 11/222 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG + LL+ + Q +Y++ ++ SS LL+L+NDIL Sbjct: 77 KSEFLANMSHEIRTPMNGIIGLSSLLQEMDMPK---DQKEYIQMLNISSLSLLDLINDIL 133 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D + ++AG ++L ++++ L +L EV+ K E +I + D ++ + D +L Sbjct: 134 DFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDATQL 193 Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+ + ++SNA+ F+ G T + F V ++G + D ++VF++F Sbjct: 194 RQVLNNLVSNAIKFTHTGYVHLHTQLETDTDTETTIRFEVIDSGIGVSADKHEAVFDKFQ 253 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 R+ G GLGLSI ++L GG + ISS D+G T Sbjct: 254 QADGSTTRKYGGTGLGLSICRQIVHLMGGEIKISSEVDKGST 295 >gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 1186 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 135/283 (47%), Gaps = 31/283 (10%) Query: 523 DSVLEY----SIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALR-------------- 563 D VLE II Q +LT + ++T R E L + N+ L+ Sbjct: 749 DEVLELLFSGEIIESQGQQFILTVMTDITVQKRVEEELVKTNQKLQESMDKANKMAVKAE 808 Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA+E+K+ F+ ++S+E+R+PL I+G+T+LL L N K+ Y++ I ++ LL+ Sbjct: 809 KANELKSQFLANMSHEIRTPLNIIMGYTELL-AKDLEEDNYKR--YIKSIRSAGDSLLDQ 865 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILD++ ++AGI+++NY I L LL + A K+ + ++ D D Sbjct: 866 VNDILDMSKIEAGIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMDNLPPLVKMD 925 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCK 736 R QI +L NA+ F+ G I R +N V++ G I + + Sbjct: 926 EFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKGNNNIKLRIIVQDTGIGIKAEKQE 985 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +F F R G GLGLSI +++ G +S+ S+ Sbjct: 986 EIFKAFSQENAESTREFGGTGLGLSITRRLVDMMDGQISLQST 1028 >gi|256044286|ref|ZP_05447190.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256113119|ref|ZP_05453996.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|260563640|ref|ZP_05834126.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260153656|gb|EEW88748.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M] Length = 609 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 448 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556 >gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 701 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 15/260 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 V D R R L+ E L+++ K F+ +S+E+R+PL++I+G+TD+L + L Sbjct: 155 KVLDLGRTNRELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDILFDT---CLA 211 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ YV I S +LL +VND+LD + V++G + L+ L E + + T++ Sbjct: 212 PEQTDYVTNIKKSCDVLLGIVNDVLDFSRVESGEIGLDPIEFDPEVLCFECLEMVRTQVD 271 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718 + + + I D G AD R Q+ +L NA F+ G S + + + Sbjct: 272 TSRVELLCRICDCVPGCVRADPNRFRQVLLNLLGNAAKFTVNGVIELSLKVKEKTKTGIV 331 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ----RRGVGLGLSIVESFINLHGGHVSI 774 SV++ GS IP +F F RG+ RG+GLGLSI GG++++ Sbjct: 332 LCASVRDTGSGIPTAALGVIFKPF-QQVVRGRIAKGLRGMGLGLSICRKIARRMGGNITV 390 Query: 775 SSSD-EG-VTTINCRIPSKE 792 S + EG V T + R+ E Sbjct: 391 ESREGEGSVFTFSSRVEPVE 410 >gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 774 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 18/247 (7%) Query: 558 KNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 K+EA+ K K+ F+ +S+E+R+P+ I+G ++L S L + +Q ++VE + Sbjct: 252 KSEAMAVEAAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHL---DDEQRRFVEIL 308 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 S LL+L+N+ILDL+ ++AG + + L+ ++ + + A H + + I Sbjct: 309 QESGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNI 368 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFI---FSVK 724 + + D RL QIF ++ NA+ F+ +G ++++ DNG + F+VK Sbjct: 369 NRDVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMADNGGSLKIHFAVK 428 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G I +D S+F+RF R+ G GLGLSI +S GG + + S T Sbjct: 429 DSGIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGT 488 Query: 783 TINCRIP 789 T++ +P Sbjct: 489 TVHMELP 495 >gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] Length = 875 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 34/267 (12%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + K+ F+ +S+E+R+PL IIGF++L L + QY+E I Sbjct: 446 LLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIK 501 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+N ILDLA +++G ++L + + + + A + + D Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-------------- 718 + G V D RL Q+ ++ NA+ F+ +G V+ ++ A D+ D Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEVAP 621 Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 F+V+++GS I + +F RF G GLGL+I S + L Sbjct: 622 PAASDATSGLLHFTVRDSGSGIAAEQQGRIFTRFAQGEGASPHGGHGLGLAIAASLVELM 681 Query: 769 GGHVSISS-SDEGVT---TINCRIPSK 791 GG + + S EG + TI R+P Sbjct: 682 GGEIWLESRPGEGSSFHFTIAYRLPPP 708 >gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 1397 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F N R E AL + A A+ K+ F+ ++S+E+R+P+ +IG T LL + S Sbjct: 846 FTNAELRYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNT---S 902 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q + + AS LL ++NDILD + ++AG ++L + L LL++ +A K Sbjct: 903 LAEEQRSFAQTALASGESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVK 962 Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + + + D + F+ D R+ QI + + NA+ F+ KG + L+ + Sbjct: 963 AGDKGLEFICAALPDVPV-RFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDE 1021 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSVK+ G IP + +F F R+ G GLGL+I + L G + Sbjct: 1022 EVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEIG 1081 Query: 774 ISS 776 ++S Sbjct: 1082 VNS 1084 >gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 1513 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 33/265 (12%) Query: 544 NVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIG 589 +++D V E L E N L +A+ K+ F+ ++S+E+R+P+ I+G Sbjct: 823 DISDRVETEARLQEANRRLEEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILG 882 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 LL + L +Q + E + AS+ LL L+NDILDL+ ++AG + L L Sbjct: 883 MAALLLDT---DLTPEQRHFGEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRS 939 Query: 650 LLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L ++V ++A + + + + + D RL Q+ + +L NA+ F+ +G V Sbjct: 940 LFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRGE-V 998 Query: 709 ILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGL 758 +++A R + FSV++ G IP D +F +F + H G G GLGL Sbjct: 999 VVRARRVSESPERVQVRFSVRDTGIGIPADKVDLLFQKFTQADASTTRHYG---GTGLGL 1055 Query: 759 SIVESFINLHGGHVSISSSDEGVTT 783 +I ++ + L GG + + S EGV + Sbjct: 1056 AISKNLVELMGGEIGVHSR-EGVGS 1079 >gi|255974458|ref|ZP_05425044.1| sensor histidine kinase [Enterococcus faecalis T2] gi|255967330|gb|EET97952.1| sensor histidine kinase [Enterococcus faecalis T2] Length = 398 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 162 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 221 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 222 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 279 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 280 GDTEKLIRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 339 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 340 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 388 >gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1424 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 843 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEY 902 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L LL+ V+ + + ++ Sbjct: 903 AGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVALRRLLDYVEATFRPMTSQKSLEF 962 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDF 719 + + G + D RL Q+ +LSNA+ F+ +G + + AA G Sbjct: 963 TMSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGGVGLHIEPAVDQNIPAAVHRGGA 1022 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G IPE +++F F R+ G GLGLSI +L GG V++ Sbjct: 1023 VVAFHVKDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1082 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1083 STPGQGSTFTLYLP 1096 >gi|90961188|ref|YP_535104.1| two component system histidine kinase [Lactobacillus salivarius UCC118] gi|90820382|gb|ABD99021.1| Two component system histidine kinase [Lactobacillus salivarius UCC118] gi|300214111|gb|ADJ78527.1| Sensor protein [Lactobacillus salivarius CECT 5713] Length = 383 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A+ ++ E R DE+ + +VS+++R+PLT+IIG+ L++ + S +Y Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S + +LV+D+ + V L ++ LN +L ++ S + ++ + I I Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQIQSLELNAMLEQIGASFELEANKKGMEINTI 254 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731 AD ++L ++F+ +++NA+ + S G + L+ + D + + N+G IP Sbjct: 255 LPDSPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E + VF+RF V ++ + G GLGL+I +S I LH G++ + S++ +T+ R+P Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373 Query: 790 SK 791 K Sbjct: 374 IK 375 >gi|82471109|gb|ABB77560.1| ETR1 type ethylene receptor [Ziziphus jujuba] Length = 738 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E R+P+ II + LL+ ++L Sbjct: 315 ESMRARNLLIEQNVALDLARREAETAIRARNDFLAVMNHETRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ + EV I Sbjct: 375 ---TAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHSVFREVHNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712 + + + L + V D +RL+QI ++ NA+ FS +GS + +++ Sbjct: 432 PVASVKKLMVMLNLAPDLPVYAVGDEERLMQILLNVVGNAVKFSKEGSISVAAFVAKVES 491 Query: 713 ARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD DF VK++GS I P+D+ K +F +F R G GL Sbjct: 492 LRDFRAPDFFPMPSDCHFYLRVQVKDSGSGISPQDIPK-LFTKFTQTQPLATRNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574 >gi|17987640|ref|NP_540274.1| histidine protein kinase DIVJ [Brucella melitensis bv. 1 str. 16M] gi|17983351|gb|AAL52538.1| histidine protein kinase divj [Brucella melitensis bv. 1 str. 16M] Length = 435 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 155 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 214 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 215 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 274 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 275 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 333 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 334 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 382 >gi|147825347|emb|CAN73257.1| hypothetical protein VITISV_002135 [Vitis vinifera] Length = 741 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS++L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + L F D +RL+QI ++ NA+ FS +G+ I ++ Sbjct: 432 PIASVKKLFVSSSLAPDLPEFAFGDEKRLMQIMLNVVGNAVKFSKEGNISIFAFIAKSES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD+ DF VK++G+ I P+D+ K +F +F R G GL Sbjct: 492 LRDSRTPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GGH+ I S G Sbjct: 551 GLAICKRFVNLMGGHIWIESEGLG 574 >gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] Length = 572 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 12/261 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592 +Q +L + ++ + A+ E+ ++A+E + + FV +++ELR+PL ++G + Sbjct: 169 SQLLLVTDLICSAITHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ ++L NS Q + V +S S L ++ND+LD + ++AG+++L L+DL N Sbjct: 229 LISDTEL---NSSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKKFSLHDLRN 285 Query: 653 EVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 ++ + E + I V SD F D +R+ Q+F ++ NA+ F+ +G V + Sbjct: 286 TIESIFTNRAIEKQLDFNISVASDVP-SHFKGDLERITQLFVNLIGNAIKFTEEGH-VNV 343 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 + F+FSV++ G I E K++F F + R G GLGL+I + L Sbjct: 344 DIEWSDQHFVFSVEDTGVGIAESAYKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVGLM 403 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G + ++S TT +P Sbjct: 404 DGDIGVTSIVGSGTTFTISVP 424 >gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 662 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F ++T+ V + L +++ L A E ++ F+ ++S+E+R+P+ ++G +L S Sbjct: 261 AFQDITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVLGMLQILDAS--- 317 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL+++Q +++ S+T LL ++NDILD +D+G + L I LN +LN Sbjct: 318 SLDNEQRRFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDLNQVLNNCVDIFNP 377 Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARD 715 E +I+ +K + + + S + D RL QI + +LSNA+ F+ +G +T + + Sbjct: 378 HAKEKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQGQVNIATELTLLKKG 437 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 VK++G + ++ +F+ F R+ G GLGLSI L G VS Sbjct: 438 KATLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLSITRKLCQLMSGDVS 497 Query: 774 ISS 776 + S Sbjct: 498 VKS 500 >gi|153952802|ref|YP_001393567.1| sensory transduction histidine kinase [Clostridium kluyveri DSM 555] gi|219853467|ref|YP_002470589.1| hypothetical protein CKR_0124 [Clostridium kluyveri NBRC 12016] gi|146345683|gb|EDK32219.1| Predicted sensory transduction histidine kinase [Clostridium kluyveri DSM 555] gi|219567191|dbj|BAH05175.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 471 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 ++L + ++ + F+ +VS+E+RSPLT+I GF + + + KQ+ Y+ + Sbjct: 241 DSLEQVEKNRRHFISNVSHEIRSPLTSIKGFIGGMIDGIIP--HEKQNYYLSVTYSEIQR 298 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LDL+ ++AG KL + +N+++ TK++E +++ V+ + Sbjct: 299 LTRLVNDLLDLSAIEAGQFKLRIEELDINEIIRLCIIKFQTKINEKKLKVDVVMENDKLY 358 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 ADR R+ Q+ + ++ NA+ + + G + + SV N+G IPE K ++ Sbjct: 359 VAADRDRINQVVTNLIDNAVKYVNVGGNIKVSTKIKGEKAFISVYNDGEGIPESELKHIW 418 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +RF S+ R + GLGLSIV S + G + + + + G Sbjct: 419 DRFYKSDKSRTSKVSTGLGLSIVRSILTQLGEDIWVENRESG 460 >gi|327536389|gb|AEA95223.1| sensor histidine kinase [Enterococcus faecalis OG1RF] Length = 393 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANSASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] Length = 1128 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++NE L+ AD++K+ F+ S+ELR+PL ++G + L + G++ + Q ++ Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI A + V + G IP Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SAMVVDDQVRVQVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 637 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 126/222 (56%), Gaps = 8/222 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + +AD +K++F+ ++++E+R+PL I+GF+ +L + ++Q ++ + I Sbjct: 403 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE--DRETRQ-EFADIIQ 459 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +L L+ D+LDL+ +++ M L Y + L+ E+ I +MHE + +++ Sbjct: 460 NNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELYDC 518 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +L DR RL QI + +L+NA+ + +GS + R F V+++G IPED Sbjct: 519 EEL-VMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPEDK 576 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++F+RFV + +GVGLGL+I + + GG++ ++S Sbjct: 577 IDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTS 616 >gi|255020611|ref|ZP_05292674.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus caldus ATCC 51756] gi|254969996|gb|EET27495.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus caldus ATCC 51756] Length = 494 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + +++ F+ VS+EL++PL + +L+ + +LG L+ Q + +E IS L Sbjct: 258 LREEERLRHLFLSQVSHELKTPLASARSGAELMLSERLGKLSQAQREVLEIISRQVQELY 317 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + ++LD+ + A ++ + + L L E+ + + ++++ D L Sbjct: 318 LAIQEMLDMHALQAQSLEYAVTDLELATQLQELCGRMQPLLDRRQQKMEIAVDAGL-QVR 376 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +RLLQI S ++SNA +S G T+ + A + V+++G IPE + VF R Sbjct: 377 ADPKRLLQILSNLVSNAHKYSVSGDTIRVAARAEGAGVRIQVRDHGPGIPEALLGRVFER 436 Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F +A RG GLGL+I + G + + + +G + +P+ Sbjct: 437 FFQVSASSNLPRGTGLGLAIARELVLAQHGEIRVRNHPQGGLSAEVWLPA 486 >gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 979 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 18/248 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK---TSKL-------GSL 602 R LTE N L + D +K++F+ VS++LR+PLT+I+GF+ +++ T + L Sbjct: 725 RELTEANARLTELDNLKSAFLNTVSHDLRTPLTSILGFSKIIQRDFTRRFLPLAEGDSVL 784 Query: 603 NSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +K S+ ++ I + L LV+D LDL+ ++ G T L L+ S+ Sbjct: 785 RNKASKILDNLGVIVSEGERLTRLVSDFLDLSRIEDGRYVWKDKTTDLGVLIRGAVSSMK 844 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + ++ ++I+V +D L + D R+ Q+ + +LSNA+ F+S+G TV L A G Sbjct: 845 GALLQKHGVQIRVDADSHLPALWVDPDRIAQVLTNLLSNAIKFTSEG-TVTLTARASTGS 903 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV + G IP D +F++F V + +G GLGL+I + + + G + + S Sbjct: 904 IRVSVADTGMGIPPDELPMIFDKFYQVGDDTLVAEKGTGLGLAICKQIVEHYDGAIWVES 963 Query: 777 SDEGVTTI 784 + +GV ++ Sbjct: 964 T-QGVGSV 970 >gi|225388703|ref|ZP_03758427.1| hypothetical protein CLOSTASPAR_02439 [Clostridium asparagiforme DSM 15981] gi|225045215|gb|EEG55461.1| hypothetical protein CLOSTASPAR_02439 [Clostridium asparagiforme DSM 15981] Length = 438 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 17/247 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L E+ +K +N F+ S+ELRSPL+ I S + + KQ Q++ Sbjct: 200 RSLKPIEESRKK----QNEFIAAASHELRSPLSVIRS-----SLSAVTAAPEKQDQFLAN 250 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I L LV+D+L LA+ DA + + + LL V + E N+R+ + Sbjct: 251 IDRECLRLSGLVSDLLLLASADAKTWTIRREDLDADTLLIGVYERFEPLAQERNVRLCLE 310 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKN 725 + + L D QRL Q+ S +L NA+ ++ G V L A R F+V + Sbjct: 311 LPEEALPHLTGDGQRLEQVLSILLDNALTYTPAGKQVTLSACRREARGHKKAGVTFAVSD 370 Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G +P+ K VF+RF ++ R R+ GLGLS+ + + LHGG + + ++ G Sbjct: 371 QGCGVPDADKKHVFDRFYRADGSRTDRQHYGLGLSVAKELVQLHGGTIGLEDAEGGGARF 430 Query: 785 NCRIPSK 791 +P K Sbjct: 431 LVHLPVK 437 >gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 1319 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ + E L E E + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 581 LLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 638 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q +Y+ I+ S+ LL ++NDILD + ++AG + + L+++ + + ++ K Sbjct: 639 -DPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYK 697 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716 HE + + D K+ V D RL Q+ + SN++ F+ KG S ++ + + Sbjct: 698 AHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFTEKGEIVVSALVEQLDENR 757 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 FSVK+ G I ++ + +F F S A R G GLGLSI + + L GG + Sbjct: 758 ATIRFSVKDTGIGIAKEKIQHLFRAF-SQADSSITRQFGGTGLGLSISKQLVELMGGELV 816 Query: 774 ISSSDEGVT-----TINC 786 +SSS EG TI+C Sbjct: 817 VSSS-EGTGSVFSFTIDC 833 >gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 637 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 117/478 (24%), Positives = 196/478 (41%), Gaps = 39/478 (8%) Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390 +N+ F E+W++ + + F K PE N W + S +S D Sbjct: 181 YNQKFAEMWKLPQQLILSKKC-PRCKAFFEGQMKDPETFNRLIWAVSSTSNIESY----D 235 Query: 391 TWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446 L +G+ G G +W ++T E L + + + S+ Sbjct: 236 VLELKDGRVFAHYSQPQWLGQKIIGRVWSIWDITESKQTEEALR-LNEARFRALAETSDA 294 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRL------------SPGTHIRNIAATCSRYYNES 494 D + NPA L L G IRN A + Y E Sbjct: 295 STFLVQDTQFCYVNPAVEVLTGYTRTELLNGFDIRRLIKYRKGRQIRNSATATNFEYQE- 353 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 +I+T ER L + +L DS +++ + M+T +++TD +AE Sbjct: 354 ------ISILTKNGAER-WLSCAVTIL-DSTIDFQ----GKSVEMITAIDITDYKQAESE 401 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613 LT+ E + E++ SF+ V ++ R+PL NI+ F++ L L + + Q ++ + Sbjct: 402 LTQALEQAKHLGELRASFLSMVCHQFRNPL-NIVSFSNSLLKRYLNAQTEETIQPLLDQV 460 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L +++D+L A +A +K S + + N+V + N I IS Sbjct: 461 QLSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQMAHFPN--YINFIS 518 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + + D+ L I ++ NA+ +S GS V L+ +N IF VK++G I Sbjct: 519 QTEYLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRLLGNNEKIIFQVKDDGIGISTL 578 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 K +F F + G GLGLSIV++ ++LHGG V++ S TT +P K Sbjct: 579 DQKRLFEPFYRGKNVDNIPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTFTVVLPHK 636 >gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1187 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 7/236 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K+ F+ + +E+R+P+T ++G ++LL + SL+S+Q YVE I + Sbjct: 810 KRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDT---SLDSRQRSYVESIRRAG 866 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA ++AG ++L+ L EV +A + + + ++ Sbjct: 867 DHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAGLMAPVAEQRGLAFHLRVAPEM 926 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + V D R+ QI +L NA+ F+ +G V+ +F V++ G + E+ Sbjct: 927 PAAVRGDPGRVRQILLNLLGNAVKFTDRGEVVLELGTVSPEGLVFVVRDTGPGLSEEQKA 986 Query: 737 SVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF ++ R R G GLGL+I + GG + + S+ T ++P Sbjct: 987 RLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGRIEVDSTLGHGTAFRVQLP 1042 >gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] Length = 909 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++NDIL Sbjct: 297 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 353 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 354 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 413 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 414 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 474 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 520 >gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] Length = 1755 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E +L + +A+ K+ F+ ++S+E+R+P+ ++G L++ ++L +++Q YV Sbjct: 1006 ENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQL---DTRQQDYVV 1062 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +++ LL L+NDILD + +DAG ++L+ L D+L E+ ++ H + + Sbjct: 1063 KAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQHHKTVELMF 1122 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNN 726 D L V D+ R+LQI + NA+ F+ G VI L A R + + SV + Sbjct: 1123 EVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIHLSALRQDAASVTLQVSVTDT 1182 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + +FN F RR G GLGL I + + L G + + S Sbjct: 1183 GIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDS 1234 >gi|122938377|gb|ABM69036.1| mutant Arabidopsis ethylene receptor [Cloning vector pBEO210] Length = 738 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 492 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 550 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570 >gi|237716144|ref|ZP_04546625.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262407756|ref|ZP_06084304.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647233|ref|ZP_06724831.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809621|ref|ZP_06768313.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229443791|gb|EEO49582.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354564|gb|EEZ03656.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637413|gb|EFF55833.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443164|gb|EFG11939.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 644 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 456 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ + + Sbjct: 457 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 516 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ G T+ + +FSV + G Sbjct: 517 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNEETQMAVFSVTDTG 576 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627 >gi|254412242|ref|ZP_05026017.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181208|gb|EDX76197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 365 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 118/227 (51%), Gaps = 1/227 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ +++K F+ S+E R+PLT I DLL+ ++++K+ +++ I S ++ Sbjct: 138 KELNQLKTQFIAITSHEFRTPLTTISSSNDLLERYCRDTMDAKKEKHLRQIKLSVNQMIQ 197 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++D+L + ++G ++L I L + + + I T + +I G+ Sbjct: 198 LLDDVLLIGRAESGKVELQLIPIDLVKFCHNLVEEIQTNAG-DKYQIIFTHQGEFTETCL 256 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D L I S +L+NA+ +S +G V ++ F +K++G IP + K +F F Sbjct: 257 DINLLRPILSNLLANAVKYSPQGGVVTFHLFSNDTTITFQIKDSGIGIPPEAQKYLFESF 316 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ G+ +G GLGLSIV+ +++HGG +S+ S TT ++P Sbjct: 317 HRASNVGKIKGTGLGLSIVKRCVDIHGGEISVDSEVNVGTTFTVKLP 363 >gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella fastidiosa M12] gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella fastidiosa M12] Length = 558 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521 >gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2] gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1238 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 16/257 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA L ++ L + K+ F+ ++S+ELR+PL +++ + LL +K G+L KQ +Y Sbjct: 523 RARAQLEQQAMQLGITSKYKSEFLANMSHELRTPLNSLLILSQLLSENKEGNLKPKQVEY 582 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S LL ++++ILDL+ VDAG M +N+ T+ L +L V+Q+ A + +++ Sbjct: 583 AQTIYMSGADLLKMIDEILDLSKVDAGKMDINHETVHLEELELFVEQNFAPVAAKRELQL 642 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 I + + ++D RL QI +LSNA F+++GS + K +R NG+ Sbjct: 643 HTEIEENLPDAIISDGYRLKQILRNLLSNAFKFTTEGS-IRFKVSRANGEQLPDMLDSRK 701 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 SV++ G I D +F F R+ G GLGLSI L GG +++ Sbjct: 702 SYLALSVRDTGIGIASDKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSKLLGGAITV 761 Query: 775 SSSDEGVTTINCRIPSK 791 S + +P + Sbjct: 762 ESEQGQGSCFTLYLPEQ 778 >gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1823 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 49/330 (14%) Query: 480 IRNIAATCSRYYNESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537 ++++ + + Y E +G IIT D R+ +ELL D + I L A Sbjct: 956 LKSMLSVRTSYQGEPNG------IITLQQCDVTRQWTTDEIELLEDVAAQVGIT-LAQAH 1008 Query: 538 TMLTFVNVTDSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGF 590 + T V+ + L E+NEAL R+A E+ K+ F+ +S+E+R+P+ +IG Sbjct: 1009 LLET------EVKRQEQLAEQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGM 1062 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 T LL L +Q +VE I S LL ++NDILD + +++G M L L Sbjct: 1063 TGLLLDM---DLTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTC 1119 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + E +A K E + + + D + S V D RL QI +L NA+ F+ G V+ Sbjct: 1120 IEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVKFTEAGEIVV 1179 Query: 710 LKAARD----NGDFIF-----------------SVKNNGSSIPEDMCKSVFNRF--VSNA 746 AR +G+ ++ +VK+ G IP D +F F V + Sbjct: 1180 SVTARKISERHGEELYKLPLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVDAS 1239 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGL+I + + GG + + S Sbjct: 1240 TTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1269 >gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 546 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 19/254 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-------NSK 605 R L + N+ L+ D+ K+ F+ VS+ELR+PLT IIGFT+++K +L + N+ Sbjct: 290 RELKDANQKLQDLDKAKSGFLSTVSHELRTPLTAIIGFTNIIK-KRLDTFIFPQIETNAI 348 Query: 606 QSQ-YVEYISASSTILL-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +SQ ++ I + I+L NL+ND+LDLA ++AG ++ + +++ + Sbjct: 349 KSQKAIQQIKENINIILSEGERLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAA 408 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + + V + + F D+ R +Q+ ++SNA+ F+ KG+ DN Sbjct: 409 TTALIEQKGLALNVDIEKNIPDFYGDKNRFIQVVINLISNAIKFTDKGAISCYAKQTDN- 467 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +V + G I + + +F++F V + + G GLGL I + + HGG + Sbjct: 468 KIQVTVMDTGVGIAPENLEKIFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAE 527 Query: 776 SSDEGVTTINCRIP 789 S T + IP Sbjct: 528 SEPNKGTAFSFTIP 541 >gi|83942229|ref|ZP_00954690.1| conserved hypothetical membrane protein [Sulfitobacter sp. EE-36] gi|83846322|gb|EAP84198.1| conserved hypothetical membrane protein [Sulfitobacter sp. EE-36] Length = 608 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 13/261 (4%) Query: 532 PL-PNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPL 584 PL PN + +T V++TD + RAL +AL +ADE K+ F+ VS+ELR+PL Sbjct: 310 PLDPNGAILGWSITLVDITDRIVITRAL---EDALLRADEANRAKDEFISVVSHELRTPL 366 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T++ G L + +LG ++++ +E + L LV++IL +D + L+ Sbjct: 367 TSLKGGLALALSGRLGEIDARIRSPLEIAQRNGMRLSRLVDNILLAQKIDVDALSLDALP 426 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L LL E + E I + + + + D L QI ++SNA+ FS + Sbjct: 427 VDLGALLKESLEENKMFAAEQKIDLVLPKGHQTATITGDAFALRQIIDNLVSNAIKFSEQ 486 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 GSTV + NG S+K++G IPE M VF RF V N + +G GLGL I + Sbjct: 487 GSTVEGSLSIRNGHVRLSIKDSGRGIPEGMEGQVFGRFEQVKNGGQYATQGSGLGLHISQ 546 Query: 763 SFINLHGGHVSISS-SDEGVT 782 G + S EG T Sbjct: 547 QLARQMSGKLFYDSVVGEGTT 567 >gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1311 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 11/230 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 +E+K F ++S+ELR+PLT II LLK + N + ++ I ++ LL+LV Sbjct: 805 EEMKYRFFTNISHELRTPLTLIIAPLESLLKKEE----NPDTRKQLKTIDRNAHNLLSLV 860 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N +LD ++ L T L D+L+ + +S E NIR + AD Sbjct: 861 NQLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITADS 920 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740 ++ ++ + +LSNA F+ +G V LKA + D + V+++G IP + + +F Sbjct: 921 PKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHIFE 980 Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +N+H+ G G+GL++ + ++ LH G + +SS + RIP Sbjct: 981 RFYQANSHK-DNTGSGIGLNVAKEYVQLHNGKIEVSSVPGKGSCFTVRIP 1029 >gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 1084 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A+ +K+ F+ +S+ELR+PL I+G++ L+++ N + Sbjct: 682 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANMGRG 738 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L+ V + + I Sbjct: 739 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKI 796 Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++ + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V++ Sbjct: 797 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQD 855 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 856 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 912 >gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 500 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K++F+ +S+E+R+P+ IIG +L L Sbjct: 160 WIDITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 218 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L + V + + + Sbjct: 219 LGKIPSQGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 278 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E + +++ G+ G + D RL Q+ +L NA+ F+ +G+ V+ L D+ + Sbjct: 279 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 338 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 339 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 395 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 396 ISLHSEPGKGTLVTIDLP 413 >gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] Length = 2332 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 16/231 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K+ F+ ++S++LR+P+ +IG ++LLK + +LN +Q +YVE I + LL L+ Sbjct: 1883 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---NLNKEQDEYVESIRVCADTLLTLI 1939 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681 NDILD + ++AG MK++ + + + ++EV +++ H + + + K+ + Sbjct: 1940 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1998 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737 D RL QIF +LSN+ F+ KGS TV K +R+ + + +V + G IPE+ Sbjct: 1999 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2058 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S+ TT+ Sbjct: 2059 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2108 >gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1] gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1156 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 6/236 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E++L + ++ + K+ F+ ++S+E+R+PL+ I+GF DLLK ++ Sbjct: 767 DITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKKE---NIE 823 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K +YV+ I SS LL ++ DILD + +++G ++++ + K Sbjct: 824 KKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETIIHLFLAKCA 883 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E +I + +I D L + D R+ QI S +LSNA+ F+ +G + + NG S Sbjct: 884 EKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGKKITVTINYKNGFLNVS 943 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 VK+ G I ++ +F F R G GLGL+I + + GG + + S Sbjct: 944 VKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYRLVKILGGELHVKS 999 >gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 764 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609 AER L +K +A A+ K+ F+ ++S+ELR+PL I+GF ++++ G L K +Y Sbjct: 503 AERYLDQKAQA-ESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGCEKYREY 561 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S LL++++DILD++ ++A + L + + ++L V + +A + + Sbjct: 562 CRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAARAKGLTL 621 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V + +AD + L QI +L NA+ F+ V ++ R V+++G Sbjct: 622 SVEMNAD-AVVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRRALDAVHIYVEDSGIG 680 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + + F + SN R +G GLGL+I S LHGG + I S T + Sbjct: 681 IPRTVLPKLGAPFEQVESNLSR-SFKGSGLGLAIARSLTELHGGRLRIRSEVGSGTIVLV 739 Query: 787 RIP 789 R+P Sbjct: 740 RLP 742 >gi|108762779|ref|YP_635549.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108466659|gb|ABF91844.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 551 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 12/249 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 TD A RA+ E LR A E K+ F+ ++ELR+PL G+ L +L Sbjct: 304 TATDIDDARRAV----ETLRAASEAKDMFLTMAAHELRTPLQAARGYAHLASVKAGDTLA 359 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + + I S + LV ++LD+ + G + L ++ + LL +V + Sbjct: 360 PGVDKALHGIHRSVNRMAKLVENLLDVGRIQRGELHLEPKSLDVGALLRDVAEHFEPLPE 419 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +I + D G V DR+RL Q+F+ ++SNA+ +S +G + L A + G Sbjct: 420 GQHIEL----DAPEGLVVPGDRERLDQVFTNLVSNALRYSPEGGRIRLAAREEAGRVHVE 475 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGV 781 V ++G IP + +++F RF AH G+GLGLSI + HGG + + S +G+ Sbjct: 476 VVDHGLGIPGEKLENIFERF-GRAHGISYGGLGLGLSIARGIVERHGGRIWAESPGSQGM 534 Query: 782 -TTINCRIP 789 +T + +P Sbjct: 535 GSTFHVVLP 543 >gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51] gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51] Length = 1901 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 15/227 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A + K F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ LL Sbjct: 1225 LKEAMDSKGRFLSNMSHEIRTPLIGISGMVTFLQDT---TLNEEQRDYTNTIQTSANSLL 1281 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKLNY L+ +V + ++T + + + + + ++V Sbjct: 1282 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1341 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI---FSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+S+G + A D I FS+ + G Sbjct: 1342 KGDKVRIRQVLLNVIGNAIKFTSRGEVFSKCRVFNPEGAPPQTDEIMLEFSIIDTGRGFS 1401 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ +F F + + Q G GLGL I + LHGG + S+ Sbjct: 1402 QEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRMEGSA 1448 >gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 695 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 14/243 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++L +K +A + ++ F+ ++S+E+R+P+ + G + L ++ SLN Sbjct: 285 DITERFNTTQSLKQKTAIAEQALKARSEFLANMSHEIRTPIHGVQGMLETLCST---SLN 341 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 KQ +Y S+ LLN+VNDILD + +D+G M + + +L+ + Q + Sbjct: 342 EKQKEYTHVAMRSAESLLNIVNDILDFSKIDSGHMTYDVEPVNFKELIEQ--QIPMFRRL 399 Query: 664 ENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I+ I++ S F+AD RL QI +++NA+ F+ KGS I G Sbjct: 400 ADKKGIEFITETAAVSDTLFLADSLRLSQILMNLMNNAVKFTDKGSIKISTRCTKYGAGR 459 Query: 721 FSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F VK + G I ++ K +F+ F+ QRR G GLGL+IV + + + G+V + Sbjct: 460 FRVKLIVTDTGIGISDEQQKVIFSPFLQAEESTQRRFGGTGLGLAIVNNIVEHYDGNVEV 519 Query: 775 SSS 777 SS+ Sbjct: 520 SSA 522 >gi|295107993|emb|CBL21946.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 468 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L ++ E + F+ ++S++ RSPLT+I G+ + + + Q +Y++ IS + Sbjct: 236 DKLNRSGEYQRQFISNISHDFRSPLTSIKGYIEAMIDGTIPV--EMQEKYLKIISYETER 293 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L +L L +D LN +N ++ S NI +++I G+ Sbjct: 294 LEKLTRGLLTLNELDIQKRMLNIQPFDINGVIKATAASFEGSCTSRNILLELILSGRELL 353 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +++ Q+ +LSNA+ FS ST+ ++ NG SVK++G IP+ ++ Sbjct: 354 AQADMEQIQQVLYNLLSNAIKFSPDNSTITIETTEKNGKIFVSVKDHGIGIPKASIHKIW 413 Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 RF + RG+ ++G GLGL+IV+ I HG H+++ S+ EG+ T Sbjct: 414 ERFYKIDRSRGKDQKGTGLGLAIVKEIIKAHGQHINVIST-EGIGT 458 >gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1089 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 6/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ E AL E +A K+ F+ +S+E+R+P+ I+G +L S+ + Sbjct: 678 WIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGMLEL--ASQDPA 735 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + + S S+ LL+L+ D+LD++++++G + L L LL+ V ++ A Sbjct: 736 LAPYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCELAPLLHSVARAFAGM 795 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718 + + +V D L + D RL QI +L NA+ F+ +G + L + Sbjct: 796 AKQKGLSYRVELD-PLPRVLIDGPRLRQIVFNLLGNAIKFTERGEVSLQASLVGSAQQPQ 854 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 ++++G I D +FN F Q G GLGL+I L GG +++SS Sbjct: 855 LHLLIRDSGVGIAPDKLPGLFNPFYRAHDPYQFAGTGLGLNIARMLCQLMGGKIAVSSEL 914 Query: 779 EGVTTINCRIP 789 T + R+P Sbjct: 915 GAGTELRIRLP 925 >gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 659 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 126/222 (56%), Gaps = 8/222 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + +AD +K++F+ ++++E+R+PL I+GF+ +L + ++Q ++ + I Sbjct: 425 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE--DRETRQ-EFADIIQ 481 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +L L+ D+LDL+ +++ M L Y + L+ E+ I +MHE + +++ Sbjct: 482 NNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELYDC 540 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +L DR RL QI + +L+NA+ + +GS + R F V+++G IPED Sbjct: 541 EEL-VMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPEDK 598 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++F+RFV + +GVGLGL+I + + GG++ ++S Sbjct: 599 IDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTS 638 >gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22] gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22] Length = 541 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ R L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K +++I DR RL Q+ +NA+ F+SKGS + + D Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I F VK+ G IP D VF RFV N+ +G GLGL+I + GG + S Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521 Query: 777 SDEGVTTINCRIPSKE 792 + + +IP E Sbjct: 522 KEGEGSCFWFKIPRTE 537 >gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1375 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 20/250 (8%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E+A+ EA +E K++F+ +S+E+R+PL +I+G DLLK + L+ +Q +Y Sbjct: 855 RLEQAILRTEEA----NEAKSAFLASMSHEIRTPLNSILGVADLLKNT---DLSDEQGEY 907 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENN 666 V +S ILL ++NDILD + ++A +KL + DLL E + Q AT + Sbjct: 908 VNIFESSGEILLTIINDILDFSKIEANHVKLENIPV---DLLQETESLMQLQATAASSRH 964 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIF 721 + + + + V D R+ QI IL+NA+ F+S G S V+ ++ N + F Sbjct: 965 VELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNSTDNITF 1024 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 ++ + G I + S+F F R+ G GLGLSI L GG ++ SS+ Sbjct: 1025 TISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITASSTPG 1084 Query: 780 GVTTINCRIP 789 +T +P Sbjct: 1085 KGSTFMVTLP 1094 >gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 915 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LT +A++ K+ + +S+ELR+PL+ I G+ +LL+ + G L+ + ++E Sbjct: 272 RELTLARGKAEEANQRKSQLLASISHELRTPLSAIQGYAELLE--QYGDLDDRDLGWLEI 329 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ SS L LVND+LD+A +++G + ++ S L L+EV + + + + +I Sbjct: 330 INTSSKDTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVDVTLI 389 Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGS 728 S S +D R Q+ + +LSNA+ F++ G + + R G V++ G Sbjct: 390 MSPETPASITSDHLRFKQVITNLLSNALKFTANGQVNVHASVRQEGRTRQLEICVRDFGP 449 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I D +F F + H RR G GLGL+I L GG + + S+ Sbjct: 450 GIEPDDLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSA 500 >gi|30026150|gb|AAO44957.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026154|gb|AAO44959.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026156|gb|AAO44960.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026158|gb|AAO44961.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026160|gb|AAO44962.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026162|gb|AAO44963.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026164|gb|AAO44964.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026166|gb|AAO44965.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026168|gb|AAO44966.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026170|gb|AAO44967.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026172|gb|AAO44968.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026174|gb|AAO44969.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] gi|30026176|gb|AAO44970.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026178|gb|AAO44971.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026184|gb|AAO44974.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026186|gb|AAO44975.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026192|gb|AAO44978.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026198|gb|AAO44981.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026200|gb|AAO44982.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] Length = 532 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407 >gi|52143544|ref|YP_083285.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977013|gb|AAU18563.1| sensor histidine kinase [Bacillus cereus E33L] Length = 375 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 137/246 (55%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 128 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 186 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 187 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSLVNMKALMEQIMIDFVPQLDDA 246 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + D +L + D ++++F ++SN++ + G +++ ++ + + ++KN Sbjct: 247 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIAIKN 305 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I +S LH G +++ S+D Sbjct: 306 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDK 361 Query: 779 EGVTTI 784 E V TI Sbjct: 362 ETVFTI 367 >gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] Length = 584 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 127/243 (52%), Gaps = 8/243 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ R+ D+++ F+ +VS+ELR+P++ + G+++ + + S ++++ + Sbjct: 346 RDMTEE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAI-VDDVASSKEEKNELAQI 400 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S + LVN++LDLA ++AG ++L ++ + + + E + +++ Sbjct: 401 IYEESLRMGRLVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMVELELT 460 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D + D R+ Q+ + ++ NA+ +S V + A + VK++GS IPE Sbjct: 461 VDIEHQIGEMDPDRIEQVLTNLIDNAIRHTSNNGFVKVLAVSNQDKLYVEVKDSGSGIPE 520 Query: 733 DMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF + +++G GLGL+I ++ I+ H G + + S + TT + IP Sbjct: 521 EDLPFIFERFYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTFSFEIP 580 Query: 790 SKE 792 K+ Sbjct: 581 IKQ 583 >gi|329997600|ref|ZP_08302870.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS 92-3] gi|328538976|gb|EGF65028.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS 92-3] Length = 779 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 381 VLEPSLPLPHKVITDGP---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 492 SQPGKGATFTLTVHAPA 508 >gi|326563325|gb|EGE13592.1| two-component system sensor histidine kinase [Moraxella catarrhalis 46P47B1] Length = 988 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|88860810|ref|ZP_01135447.1| probable two-component sensor kinase transcription regulator protein [Pseudoalteromonas tunicata D2] gi|88817405|gb|EAR27223.1| probable two-component sensor kinase transcription regulator protein [Pseudoalteromonas tunicata D2] Length = 537 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 16/235 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL N+ L + D + F+ +S+ELR+PLT I G +++L L S+ +Q +Y Sbjct: 296 ALERSNQKLAQVDHQRRQFLADISHELRTPLTIIRGESEVL-------LRSQSAQATDYK 348 Query: 614 SASSTIL------LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ L+ D++ +A AG +KL+Y L +LL+E++Q K + Sbjct: 349 EVLQRVVDEVQHTTALIEDLMLVARSSAGQLKLSYHQFDLKNLLSEMQQIYQRKARDQQK 408 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I +++ + +F+ AD +RL Q+ +L NA+ +S + ++ + V + Sbjct: 409 TI-ILNLPQQDAFIDADERRLRQVMMILLENALAYSPSQTQTEIQLIIREELIVIKVVDQ 467 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 G IPE+ + VF RF +RGQ G GLGL + ++ I+ HGGH+++ + G+ Sbjct: 468 GMGIPENEQQQVFERFY-RGNRGQTPGSGLGLPVAKAIIDGHGGHITLQPNVSGL 521 >gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N] gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N] Length = 849 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%) Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 W++ + + + GQ L ++ G + + ++T Q+ L Sbjct: 153 WQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491 ID + +G +F R+ L N +R+++ L PG I + Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261 Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542 E+ G W A + +F + L G E D V+E+ P+ + Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ R + AL A A K++F+ ++S+E+R+P+ I+G DLL + L Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + E I +S LL ++NDILD + ++A + L+ L ++EV + K Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 I + + D L + FV D RL Q+ + ++ NA+ F++ G +I L+ A Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D +V++ G I + VF F RR G GLGL+I I L G V + Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549 Query: 776 S 776 S Sbjct: 550 S 550 >gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 587 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 +RK ++++ FV +V++EL++P+T+I GF + LK+ G++N ++++ I + Sbjct: 359 IRKLEQLRTEFVSNVTHELKTPITSIRGFIETLKS---GAINKPDVSERFLDIIDIEAER 415 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+NDIL L+ ++ + + + L +++ V + + E N+ + D K+ Sbjct: 416 LHELINDILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKI-L 474 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 A+R R+ Q+ ++ NA+ ++ +V + A R G + SVK+ G IP D +F Sbjct: 475 IKANRNRMKQLVLNLVDNAIKYNIPTGSVTVDAQRVGGKVVISVKDTGIGIPPDHIPRIF 534 Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF +G+ R G GLGLSIV+ +NL+ G + +SS T ++P+ Sbjct: 535 ERFYR-VDKGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLPT 587 >gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1504 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA +A+ IK+ F+ +S+ELRSPL I+G+T LL+T K + K ++ + I ++ + Sbjct: 1129 EAAERANRIKDEFLAILSHELRSPLNPILGWTKLLQTRKFNEI--KTAEALATIERNAKL 1186 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L++D+LD+A + G + ++ + + L ++ ++ T +I + + +G Sbjct: 1187 QCQLIDDLLDVAKILRGKLSIDTTPVNLVFVIESAIDTVRTAAVSKSILLHPVLP-NIGQ 1245 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL QI +LSNA+ F+ G V ++ R V + G I +F Sbjct: 1246 VAGDSTRLQQIVWNLLSNAIKFTPNGGRVDIRIERVKDSAHIIVSDTGKGINPAFLPYIF 1305 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 F R+ G+GLGL+IV + + HGG +S S EG+ T R+P Sbjct: 1306 ESFRQEDVSITRKYGGLGLGLAIVRNLVEAHGGTISADSPGEGLGATFTVRLP 1358 >gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905] gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905] Length = 915 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 15/256 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A++ L E E L K+ F+ ++S+ELR+PL +I+ +++L + L +++++ Sbjct: 486 KAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENNQDHLTDEEAEF 545 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +S LL L+NDILDL+ V+AG + + ++ + ++++ +++ + A + NI Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNVSEVPVQIEHTFAPVAMKKNIDF 605 Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARD--------NG 717 + +D + F D +R QI +LSNA F+ GS + A R + Sbjct: 606 HISKADNVVDVFYTDEKRFQQIVKNLLSNAFKFTEHGSVTLAINQLAQRQLTSNMQDIST 665 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 D++ +V + G IP+D + +F F R+ G GLGLSI + F L GG +++ Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725 Query: 775 SSSDEGVTTINCRIPS 790 S + + IPS Sbjct: 726 QSEEGQGSIFTLTIPS 741 >gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1410 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 29/244 (11%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 ++EAL A + K+ F+ +S+E+R+P+ +IG T LL ++L S Q YVE I +SS Sbjct: 665 RDEAL-AATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRL---TSTQQDYVETIRSSS 720 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+L+NDILD + +++G ++L L + E +ATK NI + + D Sbjct: 721 DALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPIT 780 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA-------ARDNGD---------- 718 S + D RL QI +LSNA+ F+ G VI LKA + +N D Sbjct: 781 PSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEENLDENSTETTTQP 840 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F+V++ G IP +F F V ++ Q G GLGL I + + GG + Sbjct: 841 NRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQM 900 Query: 773 SISS 776 + S Sbjct: 901 WVES 904 >gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio angustum S14] gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio angustum S14] Length = 1311 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 136/261 (52%), Gaps = 22/261 (8%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTS 597 +++T + + AL E NE A E K+ F+ +S+E+R+P++ I+ +L+ KT+ Sbjct: 652 ILDITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTT 711 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L ++ SQ S LLN+VND+LD + ++AG + +N S ++DL++E+ Q Sbjct: 712 ELRQIHHNLSQ-------SGRNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQP 764 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712 + + I + D + + D RL QI + +++NA+ F+ +G + +++ Sbjct: 765 HSIHAQQKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKFTVQGNIHLAVDMIQE 824 Query: 713 ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 + FS+ + G I PED+ + +F FV RR G GLGLSI L G Sbjct: 825 SASQQRLTFSIIDTGIGIKPEDL-QRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMG 883 Query: 770 GHVSISSSDEGV-TTINCRIP 789 G + ++ SD + TT + IP Sbjct: 884 GEI-VAKSDINIGTTFSVTIP 903 >gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 910 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++NDIL Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521 >gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] Length = 729 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 161/350 (46%), Gaps = 15/350 (4%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 ++I+ + +G A+F DGR+ ++N A+ L + PG + C+ D Sbjct: 83 QSIETIPDGFALFDEDGRLVMANRAY-LLPFDGLTAVGPGVSYMEMLQFCTEE-GIVDIG 140 Query: 498 DLFAAIITSFDDER--KSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 D+ A + ER G + L + + P+ + +++T VR++ Sbjct: 141 DMAPAAWREYMRERWQSDAPGPRIVRLWNGRAIRLLDQRAPSGDMVSLALDITAEVRSKE 200 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L A K++F+ ++S+E+R+P+ ++G DLL+ + L+ Q+ Y I Sbjct: 201 VLRRAKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLRET---DLDEDQALYATTI 257 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL ++ND+LD + V+A + L L L+E+ + K + + + + Sbjct: 258 RNSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDY 317 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729 D L + + D R+ Q+ + ++ NA+ F+ +G V+ +A + +V++ G Sbjct: 318 DLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVVGVSAEGRAEIHVTVEDTGIG 377 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I D VF F V A + G GLGL+I + I L GG + + S+ Sbjct: 378 IAPDKIGHVFGEFNQVEEAQNRRFEGTGLGLAIAQKLIRLMGGEIWVESA 427 >gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 1206 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 535 NAQTMLTFVNVTDSVRAERAL-TEKNEALRK------ADEIKNSFVQHVSYELRSPLTNI 587 N QT+ + R + AL + EA R A+ K+ ++ +S+ELR+PL +I Sbjct: 711 NRQTLALQREIESHARTDAALQAAREEADRARGHAEAANRAKSRYITTISHELRTPLNSI 770 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ LL+ + ++ + Q V I LL+L+ LD+A +++G + L+ + Sbjct: 771 LGYAQLLEEDE--AMPPHRRQAVAVIRRGGDHLLSLIEGTLDIARIESGKLALDVRPMRF 828 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 D L E+ + + + + DG+L + V AD +RL QI +L NA+ F+ G Sbjct: 829 ADGLAEIARMFELQAAGRGLAFRFAVDGRLPAVVRADEKRLRQILINLLGNAIKFTQAGQ 888 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLGLSIVESF 764 V L+ A F +++ G + D VF F +A GQ G GLGL+I Sbjct: 889 -VTLRVAHQREMARFEIEDTGPGMTADELARVFEPFERGSAASGQSVGSTGLGLTIARML 947 Query: 765 INLHGGHVSISSSDEGVTTINCRI 788 L GG ++++S TT R+ Sbjct: 948 CELMGGEMTVASEPGRGTTFRIRL 971 >gi|284052622|ref|ZP_06382832.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 574 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 10/223 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A A + K+ F+ +S+E+R+P++ ++G +LL + L +Q Y I Sbjct: 355 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTPTIY 411 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL ++N+ILDL+ ++AG L L D L V ++ K + + + ++ + Sbjct: 412 RRAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLE 471 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729 + ++ D RL Q+ +++NA+ F+ G +I R D + FS+++ G Sbjct: 472 PNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRLINQDQINIYFSIEDTGLG 531 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 I +++ +F F S+A Q G GLGLSI + +NL GG Sbjct: 532 ISDELQPQLFQPFSPASSATNRQYSGTGLGLSICQHLVNLMGG 574 >gi|268609962|ref|ZP_06143689.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus flavefaciens FD-1] Length = 468 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 10/243 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ + L A+ +KN F+ VS+ELR+PLT I G+ + L G+ + V I Sbjct: 230 AINHMADELSTAEAMKNEFISSVSHELRTPLTAIKGWAETLMLDG-GTSPDTMKKGVGVI 288 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672 + L +V ++LD + + G L +T+ D+L E+ ++ + K I Sbjct: 289 VNETERLQQMVEELLDFSRMQNGHFTLQSATM---DILAELGDAVLIYSEKARKETKEII 345 Query: 673 -SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + ++ FV D+ R+ Q+F ++ NA+ +SS G + +KA + + SV++ G I Sbjct: 346 YDEPEMLPFVFGDKNRIRQVFINVIDNAVKYSSAGDRITIKAYESGDNVVVSVRDTGVGI 405 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + V +F H RRG G+GL++ + I++HGG +SI S EG+ TT+ +P Sbjct: 406 KQSDLAKVKTKFYKANH--TRRGSGIGLAVADEIISMHGGTLSIDSEGEGLGTTVTITLP 463 Query: 790 SKE 792 +K+ Sbjct: 464 AKK 466 >gi|29377732|ref|NP_816886.1| sensor histidine kinase [Enterococcus faecalis V583] gi|227555641|ref|ZP_03985688.1| sensor histidine kinase [Enterococcus faecalis HH22] gi|229547173|ref|ZP_04435898.1| sensor histidine kinase [Enterococcus faecalis TX1322] gi|229550743|ref|ZP_04439468.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200] gi|256618569|ref|ZP_05475415.1| sensor histidine kinase [Enterococcus faecalis ATCC 4200] gi|256957057|ref|ZP_05561228.1| sensor histidine kinase [Enterococcus faecalis DS5] gi|256963941|ref|ZP_05568112.1| sensor histidine kinase [Enterococcus faecalis HIP11704] gi|257078734|ref|ZP_05573095.1| sensor histidine kinase [Enterococcus faecalis JH1] gi|257081306|ref|ZP_05575667.1| sensor histidine kinase [Enterococcus faecalis E1Sol] gi|257083964|ref|ZP_05578325.1| sensor histidine kinase [Enterococcus faecalis Fly1] gi|257087794|ref|ZP_05582155.1| sensor histidine kinase [Enterococcus faecalis D6] gi|257088439|ref|ZP_05582800.1| sensor histidine kinase [Enterococcus faecalis CH188] gi|257417381|ref|ZP_05594375.1| sensor histidine kinase [Enterococcus faecalis AR01/DG] gi|257418882|ref|ZP_05595876.1| sensor histidine kinase [Enterococcus faecalis T11] gi|257421303|ref|ZP_05598293.1| two component system sensor histidine kinase [Enterococcus faecalis X98] gi|293384816|ref|ZP_06630661.1| sensor histidine kinase [Enterococcus faecalis R712] gi|293388238|ref|ZP_06632757.1| sensor histidine kinase [Enterococcus faecalis S613] gi|294781207|ref|ZP_06746554.1| sensor histidine kinase/response regulator [Enterococcus faecalis PC1.1] gi|300861520|ref|ZP_07107604.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268870|ref|ZP_07550235.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX4248] gi|307273945|ref|ZP_07555155.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0855] gi|307277354|ref|ZP_07558452.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX2134] gi|307283994|ref|ZP_07564164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0860] gi|307286510|ref|ZP_07566609.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0109] gi|307289983|ref|ZP_07569909.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0411] gi|312901343|ref|ZP_07760624.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0470] gi|312902990|ref|ZP_07762179.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0635] gi|312908858|ref|ZP_07767797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis DAPTO 512] gi|312952976|ref|ZP_07771832.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0102] gi|312979499|ref|ZP_07791181.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis DAPTO 516] gi|29345200|gb|AAO82956.1| sensor histidine kinase [Enterococcus faecalis V583] gi|44934165|gb|AAS49402.1| sensor histidine kinase [Enterococcus faecalis] gi|227175218|gb|EEI56190.1| sensor histidine kinase [Enterococcus faecalis HH22] gi|229304176|gb|EEN70172.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200] gi|229307755|gb|EEN73742.1| sensor histidine kinase [Enterococcus faecalis TX1322] gi|256598096|gb|EEU17272.1| sensor histidine kinase [Enterococcus faecalis ATCC 4200] gi|256947553|gb|EEU64185.1| sensor histidine kinase [Enterococcus faecalis DS5] gi|256954437|gb|EEU71069.1| sensor histidine kinase [Enterococcus faecalis HIP11704] gi|256986764|gb|EEU74066.1| sensor histidine kinase [Enterococcus faecalis JH1] gi|256989336|gb|EEU76638.1| sensor histidine kinase [Enterococcus faecalis E1Sol] gi|256991994|gb|EEU79296.1| sensor histidine kinase [Enterococcus faecalis Fly1] gi|256995824|gb|EEU83126.1| sensor histidine kinase [Enterococcus faecalis D6] gi|256997251|gb|EEU83771.1| sensor histidine kinase [Enterococcus faecalis CH188] gi|257159209|gb|EEU89169.1| sensor histidine kinase [Enterococcus faecalis ARO1/DG] gi|257160710|gb|EEU90670.1| sensor histidine kinase [Enterococcus faecalis T11] gi|257163127|gb|EEU93087.1| two component system sensor histidine kinase [Enterococcus faecalis X98] gi|291077898|gb|EFE15262.1| sensor histidine kinase [Enterococcus faecalis R712] gi|291082385|gb|EFE19348.1| sensor histidine kinase [Enterococcus faecalis S613] gi|294451670|gb|EFG20125.1| sensor histidine kinase/response regulator [Enterococcus faecalis PC1.1] gi|295112308|emb|CBL30945.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Enterococcus sp. 7L76] gi|300848981|gb|EFK76734.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498977|gb|EFM68469.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0411] gi|306502383|gb|EFM71660.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0109] gi|306503365|gb|EFM72614.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0860] gi|306505988|gb|EFM75160.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX2134] gi|306509253|gb|EFM78313.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0855] gi|306514786|gb|EFM83336.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX4248] gi|310625296|gb|EFQ08579.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis DAPTO 512] gi|310629117|gb|EFQ12400.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0102] gi|310633658|gb|EFQ16941.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0635] gi|311287681|gb|EFQ66237.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis DAPTO 516] gi|311291576|gb|EFQ70132.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0470] gi|315026613|gb|EFT38545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX2137] gi|315030107|gb|EFT42039.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX4000] gi|315033600|gb|EFT45532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0017] gi|315036265|gb|EFT48197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0027] gi|315148282|gb|EFT92298.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX4244] gi|315151247|gb|EFT95263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0012] gi|315153732|gb|EFT97748.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0031] gi|315155042|gb|EFT99058.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0043] gi|315158669|gb|EFU02686.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0312] gi|315163392|gb|EFU07409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0645] gi|315165669|gb|EFU09686.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX1302] gi|315168476|gb|EFU12493.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX1341] gi|315172093|gb|EFU16110.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX1342] gi|315576188|gb|EFU88379.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0309B] gi|315582999|gb|EFU95190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX0309A] gi|323479198|gb|ADX78637.1| two-component system, sensor histidine kinase [Enterococcus faecalis 62] Length = 393 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1419 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 8/242 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER + E +A+ +K+ F+ +S+ELRSPL I+G+T LL++ K ++ + Sbjct: 1037 AERQARAEAE---QANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPFSP--DKAAKAL 1091 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + + L+ D+LD++ + G M LN +++ L ++ +++ I+++ Sbjct: 1092 ATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETVRLSAETKAIQLE 1151 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + + ++ + D RL QI +L+N + F+ +G V ++ R + V++ G I Sbjct: 1152 TLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRVDTFAQLQVQDTGKGI 1211 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 VF+ F R+ G+GLGL+IV HGG V+ S EG+ T R Sbjct: 1212 NAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIR 1271 Query: 788 IP 789 +P Sbjct: 1272 LP 1273 >gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 744 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 22/264 (8%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD AE L E ++A+ K+ F+ +S+E+R+P+ +IG T LL +KL + Sbjct: 172 DVTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLLLDTKL---D 228 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y E + AS LLN++NDILD + ++AG + L+ + ++L V + +A + Sbjct: 229 PAQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELLAPRAF 288 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I IS + D R+ QI + NA+ F+ +G V L+ R+ Sbjct: 289 DKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGG-VALRLLREETSPAGR 347 Query: 719 -----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 I V++ G + E + +F+ F RR G GLGL+I + + Sbjct: 348 RIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLGLAITKRLV 407 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 G + + S + + +P Sbjct: 408 GAMEGRIEVESEEGRGSVFRAHLP 431 >gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] Length = 919 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A ++K+ F+ ++S+ELR+PL +IGF LLKT + S Q Y+E I S+ LL Sbjct: 285 QQAAKVKSEFLANMSHELRTPLNGVIGFARQLLKTK----MTSSQVDYLETIERSAANLL 340 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680 +++NDILD + ++AG + L + L D ++E +A HE + + V+ D + S Sbjct: 341 HIINDILDFSKIEAGKLMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLIDANVTQSV 400 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736 + D RL QI + ++ NA+ F+ +G V ++ D I S+ + G I + Sbjct: 401 LGDAMRLQQILTNLIGNAIKFTQQGDIEVKIQQVADKKGLITLKISISDTGIGISKQQQA 460 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 +F F ++ Q G GLGL I + I G + S D+G T Sbjct: 461 QLFCAFGQADSSITRQYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGST 509 >gi|91773722|ref|YP_566414.1| PAS/PAC sensor hybrid histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712737|gb|ABE52664.1| Response regulator domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 510 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 124/248 (50%), Gaps = 2/248 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N T+ E L++ NE L + ++K+ F+ ++++ELR+PL +I GF++LL +LG+LN Sbjct: 252 NTTERKNIEEELSKANEKLHSSHKMKDEFLANINHELRTPLISIKGFSELLYNERLGNLN 311 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + +E + +S L +L+ + ++ + +K +S + + ++L +K+ + ++ Sbjct: 312 ERQKRTMESVVRNSERLQHLIESLFYVSEMQNETIKYTFSFLNIKNILETLKKDMFPQID 371 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + L + + + + +L NA+ ++ G ++ L A+ +NGD + Sbjct: 372 HKGLEVNADIPDSLPPIHGNTKYIESVLMHLLDNAIKYTPSGKSISLIASEENGDIHIII 431 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G IP DM +F+ GL I + I H G + I+S Sbjct: 432 KDTGKGIPTDMLTHIFSEVPEEGDECDLCYSNQDYGLIICKKIIEAHRGSIWINSEVNHG 491 Query: 782 TTINCRIP 789 T I+ ++P Sbjct: 492 TEIHVKLP 499 >gi|265990697|ref|ZP_06103254.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994529|ref|ZP_06107086.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|262765642|gb|EEZ11431.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001481|gb|EEZ14056.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] Length = 532 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627 K + VS+ELR+PL +IIGF+D+L G L S +Q +Y I S LL LVN + Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD + ++ G + + V D + + + + + +G VADR+ + Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 371 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742 QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + F Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479 >gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 1267 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 154/341 (45%), Gaps = 15/341 (4%) Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512 D R NPAF E + G +R++A ++ E G F++E K Sbjct: 938 DYRFLEINPAFERQTGLHE---AQGRLMRDLAPNHEEHWFEIYGTIALTGEPVRFENEAK 994 Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572 +L E V Y + + + + F ++T+ +AE L + L+ +++ F Sbjct: 995 ALNRWYE-----VSAYRVGGPESRRVAILFNDITERKQAEEVLKTIADNLKASNQELEQF 1049 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 S++L+ PL + F+ +L+ G L++ +++ YI + + L+ND+L + Sbjct: 1050 AYIASHDLKEPLRMVTCFSQILERQYKGQLDADADEFIGYIVDGALRMEALINDLLLYSR 1109 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 ++ G+ + + + + E ++ + E N RI + G + S D +++Q+F Sbjct: 1110 INQGMRPV--ERVDMKHAIEEAISNLIIPIRERNARI---TRGAMPSIQGDLSQMVQLFQ 1164 Query: 693 KILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 ++ NAM + + + + A R + FSVK+NG I + +F F + + Sbjct: 1165 NLIGNAMKYCPEEREPEIWINAERTGKGWTFSVKDNGLGIDPAYHEQIFMIFRRLHTKAE 1224 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G G+GL++V+ + HGG + + S + +T IP K Sbjct: 1225 YPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFLFTIPEK 1265 >gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1258 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 18/264 (6%) Query: 526 LEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 +EYS P+ T++TF ++T+ RA+ L + + A + K F+ ++S+E+R Sbjct: 566 VEYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIR 625 Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 +P+ IIG + L LKT LN +Q YV I S LL ++NDILD + ++AG + + Sbjct: 626 TPMNAIIGMSHLALKTE----LNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSV 681 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNA 698 + + L+ +L+ V I+ K + + V SD V D RL QI +NA Sbjct: 682 EKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVP-NDMVGDPLRLGQILINYANNA 740 Query: 699 MDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F+ G V+ ++ A D G+ + F V++ G + + +F F R+ Sbjct: 741 VKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYG 800 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I L G V + S Sbjct: 801 GTGLGLAISRKLAELMDGEVGVES 824 >gi|296112383|ref|YP_003626321.1| two-component system sensor histidine kinase [Moraxella catarrhalis RH4] gi|295920077|gb|ADG60428.1| two-component system sensor histidine kinase [Moraxella catarrhalis RH4] Length = 988 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] Length = 782 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 14/256 (5%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNII 588 P+ ML F + D + R + EA K+ + K +F+ ++S+E+R+PL I+ Sbjct: 371 PIYINNKMLFFCVIRDISKDIRNMIRIEEARVIAEKSAKAKTTFLSNMSHEIRTPLNVIL 430 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G ++L K+ + +E I S+ LL +VNDILD + ++AG KLN + N Sbjct: 431 GLSELFNRKDFTG-TEKEYENIEAIRFSTENLLMIVNDILDFSKIEAG--KLNVQKVDFN 487 Query: 649 --DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 +L++ + + K E + + I++ V D+ RL QI + ++ NA+ F+ KG Sbjct: 488 FTELISNLNKGFRLKAEEKGLDFSINITNSIPKYIVGDQYRLSQILNNLIGNAIKFTKKG 547 Query: 706 ---STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSI 760 + K D F+++++G IP++ S+F F H Q+ +G GLGLSI Sbjct: 548 FINVNITAKVLEDKTLQLYFTIEDSGYGIPKENLNSIFESFYQTYHSEQKPKGTGLGLSI 607 Query: 761 VESFINLHGGHVSISS 776 + ++L GG++++ S Sbjct: 608 TKELVSLLGGNLTVKS 623 >gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 1660 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 133/285 (46%), Gaps = 27/285 (9%) Query: 532 PLPNAQTML-TFVNVTDSVRAERALTEKNEALRK------------------ADEIKNSF 572 P N +L T+ +++D +AE+AL + NE L A+ K+ F Sbjct: 1148 PFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAANRAKSDF 1207 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + ++S+ELR+PL I+G+ +LK L Q + I S LL L++DILD+A Sbjct: 1208 LANMSHELRTPLNGILGYAQVLKRDH--HLLPCHQQALNTIHQSGEHLLTLIDDILDIAK 1265 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIF 691 ++A ++LN S I LL + + E NI+ + +D +D++ L QI Sbjct: 1266 IEARKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQIL 1325 Query: 692 SKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 +LSNA+ F+ +G S I + F++ + G I D + +F+ F Sbjct: 1326 LNLLSNAIKFTDQGQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGD 1385 Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +R G GLGLSI + L GG + S +E +T IP K Sbjct: 1386 LNRRAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIPYK 1430 >gi|30026152|gb|AAO44958.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata] Length = 532 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407 >gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1193 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ +AE ALTE A A E K +F+ ++S+E+R+P+ +IG LL G Sbjct: 531 TLQDITERKQAEIALTEAKHAAEAAAEAKAAFLANMSHEIRTPMNAVIGLAHLLLK---G 587 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ KQ Y+ I S +LL L+NDILD + ++AG M L + L+D+L+ V + Sbjct: 588 DLSGKQRDYISRIHGSGQMLLGLINDILDFSKIEAGRMVLEETEFALDDVLDNVTSVLLH 647 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN-- 716 + E + ++ + + + + + D RL QI +L NA+ F++ GS TV ++ N Sbjct: 648 RAQEKGLIMQYVVEPDVPTNLLGDPLRLAQILINLLGNALKFTASGSITVFVRRLPGNTA 707 Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + V++ G + ++ + +F F R+ G GLGL+I + L G + Sbjct: 708 RAELEIDVQDTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQLMRGDIW 767 Query: 774 ISS 776 ++S Sbjct: 768 VTS 770 >gi|71899102|ref|ZP_00681266.1| PAS [Xylella fastidiosa Ann-1] gi|71731096|gb|EAO33163.1| PAS [Xylella fastidiosa Ann-1] Length = 510 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 245 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 297 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 298 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 357 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 358 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 413 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 414 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 473 >gi|326561891|gb|EGE12226.1| two-component system sensor histidine kinase [Moraxella catarrhalis 7169] gi|326563438|gb|EGE13703.1| two-component system sensor histidine kinase [Moraxella catarrhalis 12P80B1] gi|326568888|gb|EGE18957.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC1] gi|326569188|gb|EGE19249.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC7] gi|326578011|gb|EGE27875.1| two-component system sensor histidine kinase [Moraxella catarrhalis O35E] Length = 988 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris] gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str. Paris] Length = 910 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++NDIL Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521 >gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1157 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R++++K L + K+ F+ ++S+ELR+PL +I+ +LK +K +L Q +Y Sbjct: 471 ARRSISQKMRELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQIKYS 530 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + LL L+NDILDL+ +++G +++ + ++++L +V+ A NI Sbjct: 531 TVIFNAGNDLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNITFT 590 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNG 727 + + ++ D R Q+ +LSNA F+S+ +V + A D + S+K++G Sbjct: 591 TQQNNNVPEYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKDSG 650 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP D K +F F R+ G GLGLSI +L GG + + S Sbjct: 651 IGIPYDKQKLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKS 701 >gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1117 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 17/286 (5%) Query: 518 LELL----SDSVLEYSIIPL-PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKN 570 LELL S V+ YS +P+ +T L V++T+ ER+L EA A+ K Sbjct: 681 LELLHQNGSTVVVLYSAVPIQAYGETCLLSVLVDITERKAIERSLRRAKEAAEAANRAKT 740 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 F+ +S+E+R+P+ I+G L + L KQ+Q + I + LL L+NDILDL Sbjct: 741 EFLSTMSHEIRTPMNTILGMAQALSAA---DLPPKQTQAIRAIEIAGGSLLTLLNDILDL 797 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689 + +++G + + + L + + +I +++ +++ S R+ Q Sbjct: 798 SQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRIRQ 857 Query: 690 IFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 + +L NA+ F+ +GS V+ +A GD++ V++ G IP D +F+RF Sbjct: 858 VLVNLLGNAVKFTHQGSIVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRFTQA 917 Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R GVGLGL+I + ++L GG + + ++ +T R+P Sbjct: 918 DATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLP 963 >gi|264678720|ref|YP_003278627.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni CNB-2] gi|262209233|gb|ACY33331.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni CNB-2] Length = 924 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%) Query: 525 VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L ++ +P + ++ + ++T ER+L A + +E K F +S+E+R+P Sbjct: 400 ILTFASMPYQSEDVVICGISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTP 459 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+G +LL L LN +Q QY+ I SS LL +ND LDL+ ++AG +L + Sbjct: 460 LYGIVGTMELLA---LTGLNVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIA 516 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702 + +LL V + A + H + I + D G S AD R+LQ+ + ++ NA+ F+ Sbjct: 517 EVSPAELLERVVANFAARAHGKGLLIYGLCDLGVPSSVRADSARILQVLNNLVGNAVKFT 576 Query: 703 SKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756 G + +A + F V + G I + +F + + G GL Sbjct: 577 EAGRVAVRVSAENLQPGRVRLRFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGL 636 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783 GL+I +L GG +S+ S++G+ T Sbjct: 637 GLAICRRLSDLMGGSLSV-VSEKGLGT 662 >gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response regulator hybrid transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 676 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 13/257 (5%) Query: 543 VNVTDSVRAE--RAL-----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +++T+ +AE RAL + E +A +K+ F+ VS+ELR+PL ++G+ LL Sbjct: 266 IDITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ +E I S+ ++L++D+LD++ + +G + L + L D+L + Sbjct: 326 MRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++I + I + + D RL Q+F +L+NA+ F+ +G V + Sbjct: 384 ETIEPMARQKQITVDT-EYLPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAG 442 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + +V++ G I VF+RF RR G+GLGL+I + + LH GH++ Sbjct: 443 ADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHIT 502 Query: 774 ISSSDEGV-TTINCRIP 789 +SS + TT+ +P Sbjct: 503 AASSGADLGTTMAVTLP 519 >gi|326571860|gb|EGE21865.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC8] Length = 988 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 541 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ R L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K +++I DR RL Q+ +NA+ F+SKGS + + D Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I F VK+ G IP D VF RFV N+ +G GLGL+I + GG + S Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521 Query: 777 SDEGVTTINCRIPSKE 792 + + +IP E Sbjct: 522 KEGEGSCFWFKIPRTE 537 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+P+ I+GF DL ++ LN++QS+Y+ + +++ L+ L+ Sbjct: 182 ANRAKSEFLANMSHEIRTPMNAILGFVDLTLATE---LNAEQSKYLGMVRSAAQSLMRLL 238 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 D+LD++ +++G + + L +L ++ K + ++++ I G V D Sbjct: 239 EDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGD 298 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ +LSNA+ F+ G V IL+ F V++ G I D ++VF Sbjct: 299 ANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVF 358 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RR G GLGL+IV + GG V + S +T +P Sbjct: 359 EKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410 >gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1367 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E+ + E K+ ++K F+ ++S+E+R+P+ IIG DL+ + L Sbjct: 828 DITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGIIGMIDLMMDT---PLE 884 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +KQ +Y+ I SS LLN++NDILDL+ ++AG M L+ + + ++ +V + Sbjct: 885 NKQQEYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMDIRFMVEKVYTLFLQQAK 944 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 N + D K+ F+ AD RL+QI S ++SNA+ F+ G I G+ Sbjct: 945 AKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFTEDGQVAIKFTLASKGELSVH 1004 Query: 719 FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + V ++G I PED + +F+ F + N+ G GLGL+I + L G + + Sbjct: 1005 LLVEVADSGLGISPEDQNR-LFSTFTQLDNSSSKSYSGTGLGLAISKELCRLMNGDIGVI 1063 Query: 776 S 776 S Sbjct: 1064 S 1064 >gi|66045621|ref|YP_235462.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. syringae B728a] gi|63256328|gb|AAY37424.1| Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. syringae B728a] Length = 1003 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II ++++ +G N + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQSWAVGDTHFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFRVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPAEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|326576541|gb|EGE26449.1| two-component system sensor histidine kinase [Moraxella catarrhalis CO72] Length = 988 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G L +Q+ YV+ I SS LL LVND Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ D + D Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 R+ QI + ++ NA+ F+ GS V+ + A G V++ G I E + +F F Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772 RR G GLGL I + L GG + Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526 >gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 482 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 173/389 (44%), Gaps = 62/389 (15%) Query: 430 NTLVKVQGETIDHLS-------EGVAVFGPDGRIKLSNPAFRSL--------WKTEENRL 474 ++L+K DHLS + V F +G + +SNP L W+ EE +L Sbjct: 119 DSLIKDLNHEKDHLSSILRSMSDAVVTFDAEGSVTMSNPPGEKLIEKWNRLDWEDEEAKL 178 Query: 475 S--PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 + PG +R DL++ +I D + + + V + P Sbjct: 179 TGVPGP-LR----------------DLYSRVIIDGIDSSSKIN-----VRNGVWSVVMAP 216 Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L + ++ V +V R +TE+ K ++++ FV +VS+E+R+PL+ + G+++ Sbjct: 217 LKSDES------VRGAVAVMRDVTEEF----KLEKLRRDFVANVSHEIRTPLSMLQGYSE 266 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + ++ + V+ I S + LV D+LDLA ++AG +L +++L+ Sbjct: 267 AI-LDGFADSPEERDELVQVIHDESVRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVK 325 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 V + T E +IR+ + + L AD RL Q+ + +L NA+ + G+ + + Sbjct: 326 RVHRKFLTFAKERDIRLVCELPEQHLFMESADEDRLEQVLTNLLDNALRHTPAGAVITVS 385 Query: 712 A-------ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSI 760 R ++ +K+ G IP + +F RF + RG G GLGL+I Sbjct: 386 GKMRAEELGRSEPAYVELQIKDEGEGIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAI 445 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 V++ + H GH+ + S TT +P Sbjct: 446 VKNIVESHEGHIHVDSLVGKGTTFTLLLP 474 >gi|17646115|gb|AAL40902.1|AF145973_1 ethylene receptor [Petunia x hybrida] Length = 738 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+ E+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV I Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVLNLIK 429 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713 + + + L F + D +R++Q+ ++ NA+ FS +GS + A Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRIMQVLLNVIGNAVKFSKEGSVSVSAVAAKSES 489 Query: 714 -RDNGDFIF-------------SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD F VK+ GS I P+D+ K +FN+F N G GL Sbjct: 490 LRDPRAPEFFPVQSENHFYLRVQVKDTGSGISPQDIPK-LFNKFAQNQALATNNSGGSGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F NL GH+ I S G Sbjct: 549 GLAICKRFANLMEGHIWIESEGLG 572 >gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 541 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L F N+T+ ++ R L E E +++ +K++F+ ++S+E+R+PL I+GF++++ + Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+ ++ +N+L+ + + + Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K +++I DR RL Q+ +NA+ F+SKGS + + D Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I F VK+ G IP D VF RFV N+ +G GLGL+I + GG + S Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521 Query: 777 SDEGVTTINCRIPSKE 792 + + +IP E Sbjct: 522 KEGEGSCFWFKIPRTE 537 >gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 528 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 5/245 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 A L+ +A AD K+ F+ +S+ELR+PL IIGF++++ G + ++K Y Sbjct: 245 ASEELSRTRDAALTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQLYGPIGHAKYRDY 304 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S LL L++D+LDL+ V+AG + L + + + + + + + ++ I + Sbjct: 305 ANDIRSSGDHLLALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCRLVQGRATDSGIDL 364 Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNG 727 + + + + DR R QI +L+NA+ F+ G +V + D G + V + G Sbjct: 365 RFAPAANPSATILGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDDTAGTVVIRVADTG 424 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +D + VF F G R GVGLGL++ + + H G ++I+S+ TT+ Sbjct: 425 IGMSDDDLERVFRPFEQAGVSGARAVEGVGLGLALSRALVREHDGTLNIASAPGRGTTVT 484 Query: 786 CRIPS 790 P+ Sbjct: 485 LSFPT 489 >gi|221065883|ref|ZP_03541988.1| histidine kinase [Comamonas testosteroni KF-1] gi|220710906|gb|EED66274.1| histidine kinase [Comamonas testosteroni KF-1] Length = 936 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 14/278 (5%) Query: 516 GTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572 G LEL V++ + P+ + T +VT + E +L +A A++ K F Sbjct: 404 GDLELEDGRVVQRTFTPMTYCGGPAVLCTINDVTKLKQTELSLLNAMQAAEAANQAKTLF 463 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 + +S+E+R+PL I+G +LL L +Q QY++ + SST+LL+ +ND LDL+ Sbjct: 464 LTTMSHEIRTPLYGILGTLELLS---LTGATEQQQQYLDTLRHSSTVLLSTLNDTLDLSR 520 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691 ++AG M L + L ++L+ V + + N+R+ + V D RL QI Sbjct: 521 IEAGYMTLERRPLALLEVLDNVVSTFCVRAERKNLRLYCTASVNTPLLVLGDVTRLRQIL 580 Query: 692 SKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNA 746 ++SNA+ F+ G V+ + + F V + G I + +F+ F +++ Sbjct: 581 DNLVSNAIKFTVSGHIVLRLRSTPVEKSHVQLEFEVADTGIGIAAEHLPQLFDPYFRTDS 640 Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 Q +G GLGLSI + GG ++ ++S+ G+ T Sbjct: 641 DIDQLIQGTGLGLSICSRLSQMMGGELA-ATSELGIGT 677 >gi|307578718|gb|ADN62687.1| PAS/PAC sensor signal transduction histidine kinase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 510 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 245 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 297 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 298 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 357 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 358 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 413 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 414 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 473 >gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 816 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 20/312 (6%) Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDE-----RKSLQGTLELLSDSVLEYSII------ 531 I T + N+ L+ + T R S++ + L ++YS++ Sbjct: 484 IVPTSTDQENQPPASLLYQPLPTVLPSPQVEAIRASMRQAIALEQTCTVDYSLVVGDREV 543 Query: 532 -------PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 P+ + ++T+ RAE L E ++ +E+K+ FV S+E R+PL Sbjct: 544 WYSACISPINGDSVIFVARDITEQHRAEEELARTLEKEKQLNELKSRFVSMTSHEFRTPL 603 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T I+ T+LL++ + +++E I + + L+N +L L+ +AG ++ + + Sbjct: 604 TTILSSTELLQSHSHKWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAGRLEFHPQS 663 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L ++ + + + E+ + + G D + L I +LSNA+ +S + Sbjct: 664 LNLEQFCRDLVEDLQSSAPEHQLLFSLT--GNCTQVEMDEKLLQHILPNLLSNAIKYSPR 721 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 G +V + + F +++ G IP +F F + G G GLGL+IV+ Sbjct: 722 GGSVRFEVTCTSTSVCFQIQDQGIGIPAADLPHLFESFHRAKNVGNISGTGLGLAIVKKS 781 Query: 765 INLHGGHVSISS 776 ++LHGG +S++S Sbjct: 782 VDLHGGTISVTS 793 >gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] Length = 910 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++NDIL Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFTITDTGIGISPEDQTKLFTAFN 474 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521 >gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 678 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 14/241 (5%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Y + I Sbjct: 287 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHTTYKGLSVI 341 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKV 671 ++S+ L++D+LDL+++ G ++L ++ L + + E Q +A + + + + V Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHV 401 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 L + D RL Q+ +LSNA+ F+ + + RD+G + SV ++G I Sbjct: 402 PPTPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIA 459 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 + +F RF Q G+GLGL+IV+ + +HGG V +S G T R+ Sbjct: 460 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 519 Query: 789 P 789 P Sbjct: 520 P 520 >gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 1263 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 9/242 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V++T A+ LT+ +A A K+ F+ +S+E+R+P+ ++G +L+ SK Sbjct: 552 TAVDITAQRNAQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSK-- 609 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+S+Q + V+ +S+ LL+L+NDILD + VDAG ++L L L+E ++A Sbjct: 610 -LDSEQLRKVKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMAL 668 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + E ++ + + S V D RL QI + ++SNA+ F+++G VI + GD Sbjct: 669 RAQEKDLELVLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAEGEIVIRCQLQPEGDH 728 Query: 720 IF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + SV + G IP D +F+ F V + Q G GLGL+I + L G +++ Sbjct: 729 LLLTVSVSDTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITV 788 Query: 775 SS 776 S Sbjct: 789 HS 790 >gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1194 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL ++L + KQ Y E I + Sbjct: 813 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL---DHKQRSYTESIRRAG 869 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 870 SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEVGLL 928 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +LSNA+ F+ +G + L F V + G I D Sbjct: 929 GDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINADQ 988 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + + R G GLGL+I + GGH+ + S Sbjct: 989 KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033 >gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis S2] gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis S2] Length = 639 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 133/244 (54%), Gaps = 10/244 (4%) Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 M T +N++D AE NE L++ D++K+ + VS+ELR+PLT+I G+ +L+ Sbjct: 381 MATQINISDDKLKKHAEELKISYNE-LKELDKLKSELIAVVSHELRTPLTSIKGYVELVL 439 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G++N Q + ++ + L L+ +LDL+ ++ G +++ + L ++ +V Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVI 499 Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + + E NI++ K + D + AD+ R+ Q+ + ++ NA+ FS ++++ Sbjct: 500 EYLKPLATEKNIKLNKEVED---IAIEADKDRITQVLTNLIENAIKFSPANESILVSGVL 556 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ V + G+ IP+ + +FNRF V ++ + ++ G GLGL++ +S + H G + Sbjct: 557 EDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSI 616 Query: 773 SISS 776 + S Sbjct: 617 WVES 620 >gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1575 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 36/260 (13%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE AL E A+ K++F+ ++S+ELR+PL I+GF L++ +LN +Q Sbjct: 1071 KAEEALRIAKETAETANRSKSAFLANMSHELRTPLNAILGFAQLMERDT--TLNKRQRDS 1128 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S LLNL+ND+L+++ ++AG + LN ++ L+ LL E++Q + + + + Sbjct: 1129 LATINRSGEHLLNLINDVLEMSKIEAGRIVLNPTSFDLHRLLQEMQQMFQVRAKDKKLSL 1188 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 L ++ D +L Q+ +L NA+ F++ G V L+ + G+ Sbjct: 1189 SFELAPNLHQYILTDESKLRQVLINLLGNAIKFTNTGG-VTLRVSLGIGEQGSRGEVALS 1247 Query: 719 ---------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGL 756 F +++ G IP + ++F FV A Q G GL Sbjct: 1248 LSPLPLCPSAPLPLVPNSQSLISFKIEDTGLGIPTEELDNLFQPFVQTASARQVMEGTGL 1307 Query: 757 GLSIVESFINLHGGHVSISS 776 GL+I F+ L GG + + S Sbjct: 1308 GLTISRQFVQLMGGDIRVHS 1327 >gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697] Length = 629 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E L + E ++D +K++F+ ++S+E+R+PL IIGF+ LL + + Sbjct: 379 DITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYME----D 434 Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K+ + Y+ I+ ++ +LLN++N++LDL+ ++AG M+L L++L++E + + Sbjct: 435 AKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNV 494 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E + +K D R+ QI S +LSNA+ +++G + +G I S Sbjct: 495 PE-GVTLKKRYPASPFLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKI-S 552 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781 V + G IP++ +F RF Q G GLGLSI +S I G + ++S EG Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKVDSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGS 610 Query: 782 T---TINCRI 788 T T CRI Sbjct: 611 TFTVTFPCRI 620 >gi|160888759|ref|ZP_02069762.1| hypothetical protein BACUNI_01177 [Bacteroides uniformis ATCC 8492] gi|156861658|gb|EDO55089.1| hypothetical protein BACUNI_01177 [Bacteroides uniformis ATCC 8492] Length = 649 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L A+ K ++K+SF+QH+++E+R+PL +I+GF+ LL KL + + +YVE Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + ++T LL+L+ +IL++A +D+ + ++ I ++ E + ++ + + ++ + Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KPGVELEYV 528 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730 + +F A RQ L + +L NA+ F+ +G + + D + F +++ G I Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D +F RF +G GLGL+I + L GG + + + G P Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645 Query: 791 KE 792 K+ Sbjct: 646 KD 647 >gi|324325943|gb|ADY21203.1| sensor histidine kinase, putative [Bacillus thuringiensis serovar finitimus YBT-020] Length = 355 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 132/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + QY Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 170 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + N+ Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 230 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 231 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQC 289 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP++ VF +F +RG++ G G+GL+I S H G +++ S++ E V Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAEFHKGDITVRSNEKETVF 345 Query: 783 TI 784 TI Sbjct: 346 TI 347 >gi|312135254|ref|YP_004002592.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775305|gb|ADQ04792.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 467 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +++ V + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF + + + + Sbjct: 226 ISELVSSFNYMTEKLENL---ETMRKSFISNVSHELRSPLTSIRGFVEGILDKTIP--DE 280 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K+ Y+ + L NL+N +L+L+ ++ G + LN S + ++ E ++ E Sbjct: 281 KRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSVIAEELIKFEKRIEE 340 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 NI I V D +L ADR + ++ +L NA+ ++ G + + + NG +++ Sbjct: 341 KNIDIDVQVDEEL-VVKADRDLISRVIHNLLDNAIKYNKVGGKIYIYSEVANGKAYITIQ 399 Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IPE + K ++ RF + R GVGLGLSIV+ I LH ++ + S+EG+ Sbjct: 400 DTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHKQNIWV-ESEEGI 456 >gi|290968484|ref|ZP_06560023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781480|gb|EFD94069.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 554 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 11/239 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +TE+ EA R E F +VS+EL++PL IIG+TDL+++ S ++V YI Sbjct: 322 ITEQAEAERGRRE----FTANVSHELKTPLQGIIGYTDLMESGLAKS--EDIPRFVGYIK 375 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ L+ L+ DI+ L+ +D G + + + L L +EV +++ NI + Sbjct: 376 KEASRLVTLIEDIIRLSQLDEG-TDMPVAEVSLGHLADEVCKTLFDAAKSKNISLS--WS 432 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G G+ ++ L +I + NA+ ++ G +V + + D+ + V + G IP + Sbjct: 433 GADGNMYGVKRLLYEIVYNLCDNAITYNRSGGSVKITVSEDDKNVRLEVADTGIGIPAEH 492 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + VF RF V +H Q G GLGLSIV+ + H G +++ S T I P K Sbjct: 493 QERVFERFYRVDKSHSKQSGGTGLGLSIVKHAVAYHHGKIALESEPNKGTVITVAFPKK 551 >gi|30026190|gb|AAO44977.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] Length = 532 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407 >gi|298249232|ref|ZP_06973036.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547236|gb|EFH81103.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 391 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 136/266 (51%), Gaps = 19/266 (7%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N Q L + + +AE L E N L++A+ IK+ F+ S+ELR+P+T I G LL Sbjct: 126 NYQQQLLHASQEAAQQAEE-LAESNARLQQANRIKDQFLSIASHELRTPVTRIHGSVQLL 184 Query: 595 KTSKLGSLNSKQSQYVEYISASSTI---------LLNLVNDILDLATVDAGIMKLNYSTI 645 + L + +Q+ E++ T+ +L+ND+LD+ T+ +G + ++ + Sbjct: 185 QR----RLKRQSAQHPEWLPMYDTLDKVNSQIQQFTDLINDLLDINTLRSGKIPVHLAPC 240 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 L L +V + ++ + +I +++ +D + AD +R Q+ S +++NA+ +S Sbjct: 241 DLRCLCQQVIEEQQSQT-DRSIDLRLPADPVVVQ--ADDRRFSQVVSNLVTNALKYSPAN 297 Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763 + + ++ ++ G+ I +V N + ++ K++F F A G GLGL+I + Sbjct: 298 TPIRVEISQRPGEAILAVYNESPVLSQEQQKTLFEPFYRSPEARSSATPGWGLGLAICKE 357 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + HGG + + SS+E TT +P Sbjct: 358 IVMRHGGRIWVESSEEKGTTFFVALP 383 >gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1031 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 138/268 (51%), Gaps = 15/268 (5%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +T + + T +R L E A A++ K SF+ ++S++ R+P+ I GF L+ Sbjct: 493 RTAIALYDRTQEIRRNHQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGFNLLI-- 550 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K K +Y IS +S LL+++ND+LD++ +++G L+ + + LL E+ Sbjct: 551 DKHAEEPDKVKEYTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINS 610 Query: 657 SIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILK 711 I+ + ++N I I D + F+ D+QR+ +I IL NA+ ++ +G T+ Sbjct: 611 VISFQAKNKNQEYIVKIEDMQHDIFMGDKQRINEILMNILGNAIKYTPEGGRIEFTINES 670 Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766 + G + F++K+NG + + +F+ F S +G + G GLG++I +S + Sbjct: 671 PSSSEGFQNVTFTIKDNGIGMKPEYKDKIFDAF-SREEKGATKTIQGTGLGMAITKSLVE 729 Query: 767 LHGGHVSISSSDEGVTT--INCRIPSKE 792 L GG + + S + +T +N R+ + E Sbjct: 730 LMGGTIRVDSEEGKGSTFIVNLRLKAVE 757 >gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC 12478] Length = 1405 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 6/245 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A ++ E L + D K +F ++S+E R+PLT IIG L+ G L+ + Sbjct: 346 SARSYQAQQQRAEELAELDRAKTTFFSNISHEFRTPLTLIIGPVAELRRRTPG-LDEQAR 404 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Q +E + + L LVN +LD + ++AG M+ +Y + L + ++ + + + Sbjct: 405 QELEVVHRNGLRLAKLVNTLLDFSRIEAGRMRAHYEPVDLAAVTADLASVFRSAVERAGL 464 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +++ +L V DR ++ +LSNA+ F+ +GS + D+ + +V + Sbjct: 465 EF-IVNCVRLDEPVYVDRDMWEKVVLNLLSNALKFTFEGSIAVRVGGGDSA-AVVTVSDT 522 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G +P +F RF V G G+GL++V+ + L GG +++ SS G TT Sbjct: 523 GVGVPAAEMPRLFERFHRVETVQARSNEGSGIGLALVKELVGLLGGSITVDSSQAGGTTF 582 Query: 785 NCRIP 789 R+P Sbjct: 583 TIRLP 587 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 135/273 (49%), Gaps = 21/273 (7%) Query: 536 AQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 A+++L V + ++AE AL A A++ K+ F+ ++S+E+R+PL ++G Sbjct: 369 AESILQLAGVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGM 428 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL T+ + N +Q +Y+ S+ L L++DILD++ ++AG M + + + Sbjct: 429 LQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNT 485 Query: 651 LNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 + +K+ A + + ++ + D L + D RL QI ++ NA+ F+ KG Sbjct: 486 WDSIKELFALEARRKGLILEFGCVKDLPL-LLIGDEVRLRQILFNLVGNAVKFTEKGKIR 544 Query: 709 I-------LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 I L +++ + + +V + G IPE+ K +F FV RR G GLGL Sbjct: 545 IDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGL 604 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SIV + L GG ++I S+ T +P K Sbjct: 605 SIVSRLVKLLGGEIAIDSTPGEGTAFYISLPFK 637 >gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 18/254 (7%) Query: 551 AERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 A R T EA R +A K+ F+ +S+E+R+PL I+G+ DLL ++ ++ Sbjct: 584 ALRTATRDAEAARTEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDGD--AIQNED 641 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E I +S LL +VNDILD + ++AG + L+ T L +++ + + Sbjct: 642 RRRLELIQSSGAALLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSG 701 Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------NG 717 + I+ D L +F V D RL Q+ +L+NA+ F+ +GS ++ D G Sbjct: 702 LAIEARIDPALPTFVVGDAGRLRQVLLNLLNNAVKFTPEGSVTVIVEREDAGGAPDGRPG 761 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 D + FSV + G I +F RF RR G GLGL+I + L GG + + Sbjct: 762 DTVRFSVVDTGIGIAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGV 821 Query: 775 SSSDEGVTTINCRI 788 S + +T R+ Sbjct: 822 ESREGAGSTFWFRL 835 >gi|148359718|ref|YP_001250925.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] gi|148281491|gb|ABQ55579.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] Length = 676 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%) Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 S +P+ N + +++ V +T V LT+ EA A++ K +F+ ++S+++R+PLT + Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG ++LL+ + + +Q + + S LLN++NDILD V AG M I Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354 Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701 DL ++ + K+ +K ++ GK + ++ +DR+++ ++ +L NA+ F Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412 Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + KG I L+ + N F V + G IP + + VF RF +S +++G +G G Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL I +S++NL GGH+++ S + TT IP + Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508 >gi|30026180|gb|AAO44972.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026182|gb|AAO44973.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] Length = 532 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407 >gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Puerto Rico] gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] Length = 468 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 28/347 (8%) Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519 SL + + L+ G +R + A T + DG +F +I ++ ++L+G Sbjct: 122 SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 181 Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT----------EKNEALRKADEIK 569 +L +IP+ A + V R+ R L+ E+ E + K Sbjct: 182 ML--------VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSK 233 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDIL 628 + F+ +VS+ELR+PL +IIGF++++++ LG + S++ +Y+ I S LL+L+NDIL Sbjct: 234 SQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDIL 293 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D + +A + + + L +++ + + + + +K + +AD +R+ Sbjct: 294 DFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMK 353 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSN 745 Q+ +LSN++ F+ +G V L A I + + G I +D+ K SVF + + Sbjct: 354 QVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADS 412 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 H + G GLGL + + + L G SI S T + P K+ Sbjct: 413 THSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 459 >gi|300773122|ref|ZP_07082991.1| response regulator/sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300759293|gb|EFK56120.1| response regulator/sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 489 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 IIP+ + ++ +V + ++ + +K K+ F+ S+EL++PLT+I Sbjct: 237 IIPIREQEIVVKWVGTFTDIDDQKQIEKK----------KDEFLSIASHELKTPLTSIKA 286 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 + LL+ + NS S+Y+ + + L +L+ D+LD++ +D G +K+N + Sbjct: 287 YIQLLERTLNAEQNSATSKYLSTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFEN 346 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL+ V +I +NIRI+ D + D R+ Q+ L+NA+ +S VI Sbjct: 347 LLSNVVDTIYHTHENSNIRIEREGDVIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVI 406 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768 ++ ++N V + G IPE K++FN+F + +G+G+GL I I H Sbjct: 407 IRTEQENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQH 466 Query: 769 GGHVSISSSDEGVTTINCRIP 789 G I S +T IP Sbjct: 467 NGTFGIQSQTGQGSTFYFTIP 487 >gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 615 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + L+ E+ S+ + I I +D + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTDVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + +K +D G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGHIFVK-IKDCGENVYIHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585 >gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 798 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 16/277 (5%) Query: 527 EYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKN-----EALRKADEIKNSFVQHVSYEL 580 +YSI N + LT F N +++ A+R EK E A++ K +F+ ++S+E+ Sbjct: 243 DYSIKLSENGKDELTVFSNEMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEI 302 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL IIG + +L +KL + Q Y+ I SS LL L+NDILDL+ ++AG + Sbjct: 303 RTPLNGIIGMSGVLAETKLTPI---QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAI 359 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAM 699 + +++ + K E N+ + + + +F+ D R+ Q+ + SNAM Sbjct: 360 YSQPSNVREVIFDTLSIDIAKATEKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAM 419 Query: 700 DFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 F+ KG S + G +VK++G I + +++ N F+ RR G Sbjct: 420 KFTHKGFISISVSFSNRVENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGG 479 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 GLGL+I I L GG + I S E + + RI + Sbjct: 480 TGLGLTITNQLIELMGGALDIESEQEKGSRFSFRIKT 516 >gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +K+ F+ ++S+ELR+PL +IGFT +LKTS L + Q+ Y++ I S+ LL Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LTASQTDYLQTIEKSADNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 +++ DILD + ++AG + L + L EV AT HE + + + D K+ Sbjct: 340 SIIKDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKVDPKIPLGL 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + ++ N++ F+ G+ +V L++ + D+ + F V++ G I E Sbjct: 400 VGDPLRIQQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTGIGISERQQS 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLGL I + ++ GG +S++S Sbjct: 460 QLFQAFSQADASISRKYGGTGLGLVITQKLVSQMGGEISLTS 501 >gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 745 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 22/256 (8%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ V+ E + T+ R A K F+ +S+E+R+P+ ++G ++L+ SKL ++ Sbjct: 203 TNQVKMEASSTQA----RLASRAKTDFLAAMSHEIRTPMNGVVGMVEILENSKL---TTE 255 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-- 663 QS+ VE I SST LL+++ +ILD++ ++AG ++L ++L+ ++S T H Sbjct: 256 QSRIVETIRDSSTALLSIIENILDMSRIEAGKLELKLQK---TEVLSVFEKSADTLRHFA 312 Query: 664 -ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS------SKGSTVILKAARD 715 +++ + + D L +++ D RL QI +LSNA+ FS KG ++ D Sbjct: 313 EAHHVTLLMNYDPDLPKYMSCDSGRLRQIILNLLSNAIKFSKRPPEDPKGQVILTVGFSD 372 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773 D V ++G I E+ S+F+ F +A R + G GLGL+IV I G + Sbjct: 373 KDDLKVEVSDDGIGIGEEFLSSLFDPFEQSAEVRRHEFGGSGLGLAIVSQLIEKLNGSIG 432 Query: 774 ISSSDEGVTTINCRIP 789 + S TT +P Sbjct: 433 VQSQRGQGTTFTVHLP 448 >gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1300 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 20/242 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E ++D +K++F+ ++S+E+R+P+ I+G +++ L ++ Y E Sbjct: 894 RELEVSKEKAERSDRLKSAFLANMSHEIRTPMNAIVGLLEIVHKEDL--PEDERETYAEV 951 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRI 669 I SS L+ L++DILDL+ +++G L ++++ E+ + + K + ++ + Sbjct: 952 IRQSSRTLMTLIDDILDLSRIESGEATLQLQPCRVDEVCEELYSLFRYVTKKESDGDVVL 1011 Query: 670 KVISDGKLGSFVA----------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 K++ DG GS + D RL QI + +LSNA+ F+ KG + + + G Sbjct: 1012 KLVRDGVEGSLLNEARDEFCLEFDPVRLKQILTNLLSNAIKFTEKGEILFGYDSENLGSE 1071 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F V ++G IP+D + +F+RF V + RG GLGL+I + + G + + Sbjct: 1072 VRIRFFVSDSGVGIPQDHLEKIFDRFHKVEDPDGRVHRGTGLGLTISKRLSEMMSGVIEV 1131 Query: 775 SS 776 +S Sbjct: 1132 NS 1133 >gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 600 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620 +K + ++ FV +VS+ELR+PLT+I + + L G+L ++ +++ I++ + + Sbjct: 369 QKLENMRKEFVANVSHELRTPLTSIKSYAETLLD---GALEDRELAGKFLSVINSEADRM 425 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV D+L L+ +D MK + I DL+ + + + E N ++ + G+ Sbjct: 426 TRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGEELEI 485 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 VAD+ R+ Q+ IL+NA+ ++ +G + + R + V ++G IP + +F Sbjct: 486 VADKDRMEQVVLNILTNAIKYTPEGGKITVYIGRMYSEVYVKVVDSGIGIPREDLGRIFE 545 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A + G GLGL+I + + H G +S++S T + ++P+ Sbjct: 546 RFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLPA 597 >gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] Length = 1338 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + + + + E L++ D+IK+ F +VS+ELR+PLT IIG + + L S S +Q Sbjct: 807 AQQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQI----LHSAESTTTQ 862 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + I +++ LL L+N +LD + +++G + L T + L + S ++ NI Sbjct: 863 SHSKSILSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNI 922 Query: 668 RIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +K++ + +G F D +L ++F +LSNA+ F+ + V ++ + V + Sbjct: 923 GLKLLLHQEEIMGEF--DHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEEMVQIKVSD 980 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP +F+RF V + G G+GLS+V+ + LHGG++ SS + TT Sbjct: 981 TGIGIPPQSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTT 1040 Query: 784 INCRIP 789 ++P Sbjct: 1041 FFIQLP 1046 >gi|94313548|ref|YP_586757.1| two-component regulatory system sensor kinase [Cupriavidus metallidurans CH34] gi|93357400|gb|ABF11488.1| Two-component regulatory system, sensor kinase protein [Cupriavidus metallidurans CH34] Length = 983 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 7/234 (2%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 ++ RA+R L + A A + +F +S+E+R+PL +++G +L+ G L Sbjct: 366 AEAARAQRLLHQARLASDAAASARVAFFASMSHEIRTPLASLLGNMELVAR---GPLPPD 422 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q V + S+ LL +VND+LD + +D G + + I + DLL+ + + A Sbjct: 423 QRTRVGAMQVSAEGLLQIVNDVLDFSRIDVGELSIEPQPIAVTDLLSRIAVAHAPLAAGR 482 Query: 666 NIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +R I V D RL QI + +L NA F+ G V+L+A +G V Sbjct: 483 GLRFITVYGRDIPARLDLDPVRLTQIVNNLLGNAFKFTQAGK-VVLRARWADGALEIIVA 541 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP++ +F F V++ Q RG GLGLSI GG +S+ S Sbjct: 542 DTGIGIPDEYKDRLFQPFSQVADNRLAQARGTGLGLSICSRLAERMGGRISLDS 595 >gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1179 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ E+K F +VS+ELR+PLT I G LKT +L+ K +YVE + ++ +L Sbjct: 651 QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 707 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S L +LL ++ E I ++ + + Sbjct: 708 LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 767 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++RL + +LSNA F+S G ++ I+ ++G F V++ G IP++ +F Sbjct: 768 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 827 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF NA +G G+GL++ + + LH G + ++ +G Sbjct: 828 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAANGKQG 869 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 124/243 (51%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T + A+ + +A ++ +K+ F+ ++S+E+R+P+ IIG T LL ++ Sbjct: 572 TVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTE-- 629 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ KQ + + IS+S+ LL ++NDILD + ++AG++ L ++ + +A Sbjct: 630 -LSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAA 688 Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 + I + ++ + D RL Q+ + ++ NA+ F+ KG V+ ++N + Sbjct: 689 RAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQENAET 748 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G I + + +F FV RR G GLGL+I + + GG + Sbjct: 749 HTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIG 808 Query: 774 ISS 776 ++S Sbjct: 809 VTS 811 >gi|15837455|ref|NP_298143.1| two-component system, sensor protein [Xylella fastidiosa 9a5c] gi|9105761|gb|AAF83663.1|AE003925_3 two-component system, sensor protein [Xylella fastidiosa 9a5c] Length = 499 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 11/236 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L ++ + Sbjct: 234 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIDEQHPC 286 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV + Sbjct: 287 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGLYEPVVDSKG 346 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 R+ + + + D RL QIF +LSNA+ F+ + ++ D F SV ++ Sbjct: 347 QRLLLRASEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDS 406 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 407 GDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGIG 462 >gi|330973157|gb|EGH73223.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 801 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II ++++ +G N + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQSWAVGDTHFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACGLLVMLTAEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFRVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPAEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 1166 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R + E K+ F+ ++S+E+R+PL IIG+ + L L + S E + S Sbjct: 549 ELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLSEPEKRSS--AETVVRSGRH 606 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+LVNDILD + +DA + ++ ++ L +LL+E++ A + E + +I + L Sbjct: 607 LLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICEYPLPE 666 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 V D RL QI + NA+ F+ KGS +++++ RD + V + G + + Sbjct: 667 QVRTDPTRLRQIIINLCGNALKFTDKGSISLVVRCDRDQELLVARVVDTGIGMKPEQLGR 726 Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F+ F S A Q G GLGLSI + GG + ++S+ Sbjct: 727 LFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNST 768 >gi|254421413|ref|ZP_05035131.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188902|gb|EDX83866.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 396 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 180/406 (44%), Gaps = 64/406 (15%) Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-----------N 472 +T+ TL + ++ + EGV +G + NPA ++ W E+ + Sbjct: 7 QTELVTLRRQYQLILNSVGEGVYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHRVLHH 66 Query: 473 RLSPGTHIRNIA---------ATCSRYYNE----SDGWDLFAAII-TSFDDERKSLQGTL 518 GTH + + R NE DG + I T DE+K + G + Sbjct: 67 SYLDGTHYHRESCPIYAALHDGSTHRVTNEVFWRKDGTNFPVEYISTPMRDEQKQVIGAV 126 Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERA-LTEKNEALRKADEIKNSFVQH 575 D I A+T+L N + + VR+ A L N LR+ +K+ FV Sbjct: 127 VTFRD------ITQRKWAETVLQQTNEDLEEKVRSRAAELYTANAHLRELSALKSRFVSM 180 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNLVNDILDL 630 V +E R+PL NI L S LG + K +Q Y+ I+ + + ++++DIL L Sbjct: 181 VCHEFRNPLNNIA-----LSVSSLGRYDEKLTQTQKQKYLLGIATNVERMTHMIDDILVL 235 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLL 688 ++A + L+ I L D ++ + ++ NN R++ G+ S VA D+ L Sbjct: 236 GKLEAKRLSLSPRPIDLADFCHQ----LLLEIQPNNRRLEFT--GRFRSLVAEIDQTLLR 289 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAH 747 I + ILSNA+ +SS GS V L + IF +K+ G I PED +F F H Sbjct: 290 SILTNILSNAIRYSSAGSLVQLSLYQRKHQAIFQIKDQGLGILPEDY-PYLFEPF----H 344 Query: 748 RGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RG+ G GLGLSIV+ F+ L G + + S TT R+P Sbjct: 345 RGRNVSNIPGTGLGLSIVKQFVALQQGDIKVESQPGIGTTFKIRLP 390 >gi|168699644|ref|ZP_02731921.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1284 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 147/286 (51%), Gaps = 12/286 (4%) Query: 511 RKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 RK+++G + + + +Y +P+ A + V T +R E+ LR D Sbjct: 860 RKAVRGEVPFTGTNGRRIYDYIFVPVLGANGEVEAVAGTTRDVTDRQAMEQE--LRDVDR 917 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ +++ELR+PL I +++ + G+ ++ + + + ++ +V+D+ Sbjct: 918 RKDEFIALLAHELRNPLAPIRNELQVIRLA--GTDSAARDRARAIMDRQLAHMVRIVDDL 975 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ ++ M+L + + L +++ ++ ++ E ++V + AD RL Sbjct: 976 LDVSRINRNKMELRRARVPLAEVIASAVETARPQIDEAGHALEVELPPEPVFLNADLTRL 1035 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+FS +L+N+ ++ +G V + AA + + +V++NG +P ++F+ F S + Sbjct: 1036 AQVFSNLLTNSAKYTPRGGRVRISAAVVGDELVAAVRDNGIGVPAAALTTIFDMF-SQVN 1094 Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R R G+G+GL++V+ +HGG V+ +S+ EG TT R+P Sbjct: 1095 RTTERSTGGLGIGLALVKGLTEMHGGTVTAASAGEGTGTTFTVRLP 1140 >gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina NCIMB 400] gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 952 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 22/243 (9%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSL 602 NV + +RAL +A IK+ F+ ++S+ELR+PL +IGF LLKT L Sbjct: 304 NVELDIAKKRAL--------EASRIKSEFLANMSHELRTPLNGVIGFARQLLKTP----L 351 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ Q Y++ I S++ LL ++NDILD + ++AG M L L + L E IA Sbjct: 352 HTSQLDYIKTIERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSA 411 Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDN 716 E + + + D + V+ D R+ QI + ++ NA+ F+ KGS VILK DN Sbjct: 412 QEKGLELVIDIDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGS-VILKIHLVGQDEDN 470 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 V + G I E + +F F RR G GLGL I + IN GG + Sbjct: 471 ITLRCEVIDTGIGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGF 530 Query: 775 SSS 777 +S+ Sbjct: 531 TSA 533 >gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681] gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681] Length = 609 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 39/346 (11%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 ++S+GV +GR+ L N ++ EN ++ G HI Sbjct: 270 NMSDGVVATDDNGRVILVNRRASAMLGVNENEMT-GRHI--------------------- 307 Query: 502 AIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 A++ D E T L S S + P + ++ V T R E +T Sbjct: 308 AVLLGIDPEE-----TEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTI 362 Query: 560 EALRKADE------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L+ E + FV +VS+ELR+PLT I + + L + + ++V I Sbjct: 363 AVLQDVTEQEEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAE-RFVGVI 421 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + ++ LV D+L L+ +D+ L + ++L+EV + +M + +IR + Sbjct: 422 RNETERMIRLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFV 481 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPE 732 + +G V DR ++ Q+ ++SNA+ ++ G ++ ++A R++ G SV++ G IP+ Sbjct: 482 EQGIGKVVIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPK 541 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F RF V A G GLGLSI + HGG + + S Sbjct: 542 KDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLES 587 >gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 605 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K++F+ +S+ELR+P+ ++G LL +++L S Q +Y+ I S LL+L+ Sbjct: 216 ANQAKSNFLGVISHELRTPMNGVLGAAQLLGSTRL---ESTQREYLSIIRNSGDNLLHLL 272 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD+ ++AG M I L DL V A + ++ +G+ S V D Sbjct: 273 NDILDMTKIEAGKMTFEVIDIGLEDLHRRVTGPFAAQAEAKGLQFVSTFEGETPSVVRGD 332 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 R+ Q+ +LSNA+ F+ G+ + +R D F FSV ++G+ I + +F Sbjct: 333 PLRVCQVIQNLLSNAVKFTDTGTIHYVVRSRRISDKRVAFDFSVTDSGAGIAPADLERLF 392 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I N+ GG + + S Sbjct: 393 QPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDIQVES 431 >gi|49480108|ref|YP_037335.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331664|gb|AAT62310.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 458 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ + +F Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|150018205|ref|YP_001310459.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904670|gb|ABR35503.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1036 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 41/380 (10%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGW 497 +D++ + V VF DG I L N K + R+S HI N ++ + + DG Sbjct: 638 LDNMQDSVYVFNKDGEIFLKN-------KMAQKRMS---HIGDYNHPNDTNKKFLDLDGS 687 Query: 498 DLFAAIITSFD-------------------DERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 ++ A I ++ S+ GT + Y II N++ Sbjct: 688 EIMAEDIPHCKIIRGEYVKEYFMKIKIGECEQYVSVSGTPVFDKEGNFAYGII---NSRD 744 Query: 539 MLTFVNVTDS-----VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 + F+ + ++ A EKN+ L KA E+K+ F+ +S+E R+PL I Sbjct: 745 ITDFMENQKALEKIQIKLLEAEREKNDTLEKALEMKDEFLSLISHEFRTPLNVINSAIQA 804 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + L+ + +Y+ I +S L LVN+ILD+ +AG +K+N S I + + Sbjct: 805 IDYFCSEELSDRLKKYLRMIRLNSFRQLRLVNNILDITRANAGRIKVNKSNIDIIFMTKA 864 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + S+ T + +I I S K D ++ +I +LSNA+ F+ +G ++ +K Sbjct: 865 IVDSVYTYASQKSIDIIFSSSVKQKIVGIDDEKYERILLNLLSNAIKFTPEGKSISVKIL 924 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 VK+ G IP++ +F RF V ++ Q G G+GLS+V+ F+ GG Sbjct: 925 SRRDGICIEVKDKGIGIPQEKADIIFERFGQVDSSLSRQAEGTGIGLSLVKKFVEAIGGS 984 Query: 772 VSISSSDEGVTTINCRIPSK 791 +S+ S + + +PS+ Sbjct: 985 ISLKSKVGRGSAFSIFLPSE 1004 >gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 975 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K++F+ +S+E+R+P+ IIG +L L Sbjct: 668 WIDITERKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 726 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L +L + V + + + Sbjct: 727 LGKIPSQGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQELFDGVIELFSAQ 786 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718 E + +++ G+ G + D RL Q+ +L NA+ F+ +G+ V+ L D+ + Sbjct: 787 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 846 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 847 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 903 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 904 ISLHSEPGKGTLVTIDLP 921 >gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 1091 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%) Query: 562 LRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 L++AD+ K+ F+ VS+E+R+PL IIG T L++ ++L Q Y I +SS Sbjct: 433 LKQADQENRAKSRFLARVSHEIRTPLNGIIGMTQLMQHTEL---TDTQQDYAHKILSSSH 489 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 +LL ++ DILDL+ ++AG + + +++LL E+ ++ I + + S+ L Sbjct: 490 LLLGIITDILDLSKIEAGKLNMEQLEFQIDELLYELTSTVGVLKGIKQIEVILESEAGLP 549 Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG--DFIFSVKNNGSSIPED 733 + D RL QI + SNA+ F+ G ++ + NG F+V++ G + ED Sbjct: 550 DKVIGDPLRLKQILMNLCSNAIKFTEHGHVLVRVERVIEMNGIVRLRFTVRDTGIGMTED 609 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 ++ F A + G GLGL IV+ + L GG + + SS G+ + C Sbjct: 610 QIDMLYEPFWQAEYASASKLAGTGLGLPIVKELVQLLGGELQVESSP-GIGSCFC 663 >gi|296107761|ref|YP_003619462.1| hypothetical protein lpa_03125 [Legionella pneumophila 2300/99 Alcoy] gi|295649663|gb|ADG25510.1| hypothetical protein lpa_03125 [Legionella pneumophila 2300/99 Alcoy] Length = 676 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%) Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 S +P+ N + +++ V +T V LT+ EA A++ K +F+ ++S+++R+PLT + Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG ++LL+ + + +Q + + S LLN++NDILD V AG M I Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354 Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701 DL ++ + K+ +K ++ GK + ++ +DR+++ ++ +L NA+ F Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412 Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + KG I L+ + N F V + G IP + + VF RF +S +++G +G G Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL I +S++NL GGH+++ S + TT IP + Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508 >gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 478 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 15/257 (5%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 AQT+ T + V ER E +++N F+ +VS+ELR+PLT I GF + L+ Sbjct: 228 AQTINTMAQKLEKVEQERHHLE---------QVRNDFLANVSHELRTPLTAIQGFLEALQ 278 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + ++Q Y + + T+ +N LV+D++DL ++ + L + + D++N V Sbjct: 279 DGLVEEEEARQKYYA--VMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRV 336 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 S + E + + V + +L AD+ R+ QI ++ NA+ F+S G + ++A+ Sbjct: 337 AFSFHQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNLVKNALKFTSAGE-IRMRASL 395 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D V + G I D ++ RF V +G GLGL+IV+ + LH G Sbjct: 396 DGEYVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKC 455 Query: 773 SISSSDEGVTTINCRIP 789 + SS +T +P Sbjct: 456 RVESSPGKGSTFTIWLP 472 >gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] Length = 421 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 152/359 (42%), Gaps = 42/359 (11%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA---ATCSRYY--NESD 495 DHLS+GV + PDG++ N A R L PG + A R Y NE Sbjct: 91 DHLSDGVVLVDPDGQVVSLNRAARELL--------PGGRSEALGRPYAEVLRDYELNELV 142 Query: 496 GWDLFAAIITS-----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550 L A T+ R+S+Q + SVL+ + PL L ++T+ Sbjct: 143 ARALAGAAPTTGRFVELGRPRRSIQAQV-----SVLQGADRPL----VTLVLRDITE--- 190 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 LR+ + I+ FV +VS++LR+PL + + L L + ++ Sbjct: 191 -----------LRRTETIRRDFVANVSHDLRTPLAALQALVETLLDGALAD-PAVAEDFL 238 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I+ + LVN +L+L ++G ++L L +L + + I + Sbjct: 239 RRIAVEVEHMTRLVNQLLELTKAESGQLQLARVPTDLAELARATLRRFEPRAASKGIALT 298 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V +L D +R+ Q+ + +L NA+ F+ G + ++ A +G+ I V++ G I Sbjct: 299 VQVAPELPPVACDPERIGQVLANLLDNALKFTPAGGQITVEIAAASGEAIVRVRDTGPGI 358 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 P D VF RF G GLGL+IV+ + LHGG V S G + +P Sbjct: 359 PADELDRVFERFFKGDRARSGGGSGLGLAIVKHLVQLHGGRVWAESPPGGGAIVGFALP 417 >gi|114763421|ref|ZP_01442828.1| two-component hybrid sensor and regulator [Pelagibaca bermudensis HTCC2601] gi|114543959|gb|EAU46970.1| two-component hybrid sensor and regulator [Roseovarius sp. HTCC2601] Length = 654 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 2/210 (0%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + +FV+ V++ELR+PLT++ G LL + L K Q ++ +++ L+ LVNDIL Sbjct: 413 RTAFVETVNHELRTPLTSLNGAMRLLSSRFGNELPPKARQLLDLAERNASRLMMLVNDIL 472 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 L +D G + + +T+ ND+ E ++ + + + S D QR+ Sbjct: 473 TLQAMDQGRLNVTLATVRANDIPREAVTNMQGYADGFGVGLLLELQNTGASVQVDPQRMQ 532 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q+ ++SNA+ +S +G +V + +A + + V+++G IP ++F RF AH Sbjct: 533 QVMDNLISNAVKYSPQGESVEISSALTETEVVIRVRDHGPGIPAAAQGAIFERFAKPAHG 592 Query: 749 G--QRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGL+I + GG +S+ S Sbjct: 593 PDTQASGTGLGLAISRELVERMGGTLSLES 622 >gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 748 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613 +TE A+R DE+ +Q VS++LR+PL+ + +G L + ++ + + Sbjct: 503 VTELRRAVRNRDEV----LQVVSHDLRTPLSAVTLGAAALTRLRDGPDAAAQARRAAGRL 558 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +A+ + L++D+LDL T++ G + + DLL E + + + + + Sbjct: 559 AAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSA 618 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L + DR R+LQ+ + SNA+ + +G+ + A+ +G +F +++ G IP+ Sbjct: 619 APGLPAVACDRDRVLQVLGNVASNAVKATEEGAVCLAAEAQGDGAVVFRIRDTGPGIPDA 678 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 VF+RF + RG GLGL+I + HGG + S+ TT++ +P+ Sbjct: 679 DLPHVFDRF-QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLPA 734 >gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1164 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E L E A K++F+ ++S+E+R+PL +IGF DLL + Sbjct: 628 THTDITHRKILENDLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRT--- 684 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN Q +Y+E + S+ LL+L+NDILD + +++G M+L + + DLL+++ + + Sbjct: 685 DLNQVQRKYMETVHLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKH 744 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RD 715 K +E + + + IS + D RL QI ++ NA+ F+ KG I A ++ Sbjct: 745 KAYEKGLELILNISPKVPRNVFVDSLRLRQILLNLIGNALKFTLKGEIQIKLTATPVNQN 804 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +F+F V + G I ++ +F F R+ G GLGLSI + L + Sbjct: 805 EFEFLFEVIDTGIGINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLLQLFDSKIE 864 Query: 774 ISS 776 + S Sbjct: 865 LES 867 >gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56'] gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 1444 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 16/244 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA +L EK L + + K+ F+ ++S+ELR+PL +++ +L ++ +L KQ +Y Sbjct: 1031 RASASLEEKARELSRTSKYKSEFLANMSHELRTPLNSLLILARILADNEEHTLTPKQVEY 1090 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+A+ LL L+N+ILDL+ ++AG + + ++L++L V++S + + Sbjct: 1091 AKTIAAAGQDLLQLINEILDLSKIEAGKIDVKTQRVLLSELAEYVERSFRQIAEQKELEF 1150 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF-------- 719 V ++ G + D QRL QI +LSNA F+S G + ++ A F Sbjct: 1151 WVRVATGVPAGIMTDLQRLQQILKNLLSNAFKFTSSGRISLEIEVASKGLTFKRETLIKA 1210 Query: 720 ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G IP + +F+ F R G GLGL+I +L GG +S Sbjct: 1211 KTVLAFAVTDTGIGIPTEKQTLIFDAFQQADASTSRTYGGTGLGLTISRELASLLGGEIS 1270 Query: 774 ISSS 777 ++S+ Sbjct: 1271 LNST 1274 >gi|261213592|ref|ZP_05927873.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915199|gb|EEX82060.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 532 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQYVEYISASSTILLNLVND 626 K + VS+ELR+PL +IIGF+D+L T ++GS + +Q +Y I S LL LVN Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDML-THEIGSKLASDRQREYAGLIHQSGHYLLELVNA 310 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LD + ++ G + + V D + + + + + +G VADR+ Sbjct: 311 VLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRA 370 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNR 741 + QI + +NA+ F+ G V + AAR D FSV + G I PED+ + + Sbjct: 371 VQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTP 429 Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV N++ + G GLGLS+V+ + H G + + S T + R+P Sbjct: 430 FVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479 >gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1424 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 843 QARQELETRAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 902 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M + + L LL V+ + + ++ Sbjct: 903 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRQLLEYVEATFRPMTTQKSLEF 962 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---------NGD 718 V + G + D RL QI +LSNA+ F+ +G + ++ A D G Sbjct: 963 TVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEQGGVELRIEPAADREVPSGVHRGGP 1022 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G IP+ +++F F R+ G GLGLSI +L GG V++ Sbjct: 1023 IVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1082 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1083 STPGQGSTFTLYLP 1096 >gi|121997915|ref|YP_001002702.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121589320|gb|ABM61900.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 502 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 131/250 (52%), Gaps = 15/250 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +++ D E L E A + D K+ F+ +S+ELR+PL I+GF L+ + Sbjct: 100 ALLDIDDYKAREAELAEARVAAERTDRAKSEFLSAMSHELRTPLNAIVGFAQLIYADE-- 157 Query: 601 SLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L+++ +++Y+ +I ++ L +LV DILDLA ++AG L T+ + DLL + + + Sbjct: 158 ELDTRTRNEYLRHILSAGWHLRDLVGDILDLARIEAGRASLAPETVRIPDLLQDCLRLVR 217 Query: 660 TKMHENNIRIKV-ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-N 716 + E ++ +++ + +G V ADR RL Q+ +L+NA+ ++ +G +V+L RD Sbjct: 218 DQAAEYSVSLRLEEPEHPVGVCVWADRLRLKQVVLNLLTNAIKYNREGGSVVLSYGRDAA 277 Query: 717 GDFIFSVKNNGSSIPEDMCKS----VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G V ++G I + C++ F+R G GVG+GL + L GG + Sbjct: 278 GQVWVDVVDSGLGI-DPQCRAGLFETFDRL--GRETGSIEGVGIGLPLALRLSRLMGGEL 334 Query: 773 SI--SSSDEG 780 + S D+G Sbjct: 335 QLVDSVPDQG 344 >gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum 3TCK] Length = 940 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 17/240 (7%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D+ R +AL EK EA AD K++F+ ++S+E+R+P+ ++G + LL + L +Q Sbjct: 384 DTQRLNQAL-EKAEA---ADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQ 436 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ + S +++++NDILD + ++ G KLN + + DL+ ++ + + E Sbjct: 437 RHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKG 496 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------F 719 + + + S F AD+ R+ QI +++NA+ F+ KG V + +D D Sbjct: 497 LGFSIQCNFDYNSWFFADKSRIRQILFNVINNAIKFTDKGE-VSVSLNQDQCDDPRERRL 555 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I + ++ G I ED + +F+ F RR G GLGLSIV +NL G + + S+ Sbjct: 556 IITTQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQLVNLMNGDIQLEST 615 >gi|327542128|gb|EGF28621.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 690 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 7/240 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L ++ L + DE KN F+ +++ELR+PLT I DLL+ + + Q + Sbjct: 306 RELQKEKALLSEMDERKNRFLALLAHELRNPLTPIGNAVDLLR---FAAKDPNQVNEIST 362 Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S L+ L++D++D++ + G + L T+ ++D++ +++ + +E + Sbjct: 363 VLESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIR 422 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +D K V D RL Q+ + +L+NA ++ + + + +G +VK+NG I Sbjct: 423 RTDPKQSLHVHGDYVRLTQVVTNLLNNACKYTPPSGRIEISCGQVDGQVEIAVKDNGVGI 482 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + K +F F V + R G+G+GL++V+ + LHGG VS+ SD+ T RI Sbjct: 483 PPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVKQLVELHGGKVSLVDSDDTSTGSEFRI 542 >gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 521 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 29/346 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IR--NIAATCSRYYNES 494 +D L++G+ + PD I+ NPA + + H IR + ES Sbjct: 180 LDSLADGILILRPDHSIERCNPAISRMLNLPLENIRGRRHDEIIRWSKPPQGITLEQAES 239 Query: 495 DGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552 DGW L A + D R L + L I P + VN+ +VR Sbjct: 240 DGWPLTPHAYLYVEGDLSRSGL---------APLPVGITYAPLISSENKLVNIIATVRD- 289 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +T R+A+E+K++F+ VS+EL++P+ I G+ L+ ++ Sbjct: 290 --ITR----FRQAEELKSTFISIVSHELKTPVALIKGYVSTLRREDASWDPEIIQDSLKV 343 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + L ++ ++LD + + AG + L S + L +L V Q + T+ + I + Sbjct: 344 IEEEADRLAVMIENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQTSSHRIVVDFP 403 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 D + +AD RL Q+ + ++ NA+ ++ G + AR N I V + G I P Sbjct: 404 DDFPI--VLADEGRLQQVLTNLIGNAIKYAPGGEIRVHGEARGN-QIIVCVSDQGPGINP 460 Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 ED+ VF+RF N ++ +G GLGL + + I HGG + + S Sbjct: 461 EDV-PHVFDRFYRNPEAAKKTKGAGLGLYLSRAIIEAHGGRIWVDS 505 >gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500] Length = 878 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 16/243 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT +A +A + + F+ +S+E+R+PL +IG LL+ S SL ++ Q + + Sbjct: 456 LTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSL--SLPPEEKQMAKSVK 513 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + ILL LVNDILDL+ ++A M + + D+ +E+ Q +A + E+N+R++ ++ Sbjct: 514 SCGDILLRLVNDILDLSKLEANQMVVENIGFRVKDMAHEICQVLAAQAKEHNLRLQYEVA 573 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI----------FS 722 D D R+LQ+ + NA+ F+ +G +I+ D+ + I F Sbjct: 574 DNVPPVLFGDTGRILQVLMNLTGNAIKFTPEGVVKIIIDLIEDDAEKITFKSDEYNVCFR 633 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G +P + + +F FV R+ G GLGL + + L G + + ++ G Sbjct: 634 VQDTGIGVPPESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHG 693 Query: 781 VTT 783 +T Sbjct: 694 GST 696 >gi|228998513|ref|ZP_04158101.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17] gi|229005989|ref|ZP_04163679.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4] gi|228755257|gb|EEM04612.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4] gi|228761238|gb|EEM10196.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17] Length = 449 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 12/236 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR +++++ FV +VS+E +SPL++I GF+ L+T+ L S+Q+ Y+E I + S + Sbjct: 211 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDL--TKSEQTHYLEIIESESRRMS 268 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGKLG 678 +L +L LA++D + L + DL ++K +I M E R K ++ D Sbjct: 269 SLCKQLLILASLDKEDLTLRKQSF---DLGKQIKDTIF--MLEWEWRTKELAVEMDVPNM 323 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D L Q++ + +N++ F+ G T+ +A ++ S+ + G IPE+ K + Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F+RF V A G GLGLSIV+ I+LH G +++ S T + +P ++ Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKVIDLHSGAITVDSELGKGTIFSIYLPKQQ 439 >gi|229017878|ref|ZP_04174761.1| Sensor histidine kinase [Bacillus cereus AH1273] gi|228743469|gb|EEL93586.1| Sensor histidine kinase [Bacillus cereus AH1273] Length = 311 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 81 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 139 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + LN I + +LL ++ ++ E NI + + +A Sbjct: 140 LMNDLFEYTRVQNKELSLNSVPIDIVELLGQLTVQFRIQLQEANIECRPSFPSQKLMVLA 199 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + + G+ + + A DN + N G +IP VF RF Sbjct: 200 DGDKLVRVFENLIINAITYGNDGNHIDITAYEDNNTIAIDITNYGQAIPSTDLPHVFERF 259 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 260 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 310 >gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 985 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 148/268 (55%), Gaps = 19/268 (7%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N + +L + T + +AL++ A A++ K++F+ ++S+++R+P+ IIGFT L Sbjct: 440 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTL- 498 Query: 595 KTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + ++++K+ Y+ I +SS LL+L+NDILD++ +++G + L + + L+D+L+ Sbjct: 499 ---AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLH 555 Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++K I+ ++H + + + + D D+ RL QI +LSNA+ F+ G + ++ Sbjct: 556 DLKTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVR 615 Query: 712 ------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIV 761 R+ + VK+NG + ED + +F+ F S R Q G GLG++I Sbjct: 616 LKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQ--GTGLGMAIT 673 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +++ GG++ I + T R+P Sbjct: 674 KNIVDMMGGNIEIQTEQGKGTEFIVRLP 701 >gi|255971508|ref|ZP_05422094.1| sensor histidine kinase [Enterococcus faecalis T1] gi|256761813|ref|ZP_05502393.1| sensor histidine kinase [Enterococcus faecalis T3] gi|256854940|ref|ZP_05560301.1| sensor histidine kinase [Enterococcus faecalis T8] gi|255962526|gb|EET95002.1| sensor histidine kinase [Enterococcus faecalis T1] gi|256683064|gb|EEU22759.1| sensor histidine kinase [Enterococcus faecalis T3] gi|256709453|gb|EEU24500.1| sensor histidine kinase [Enterococcus faecalis T8] Length = 398 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 162 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 221 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 222 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 279 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 280 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 339 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 340 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 388 >gi|54295027|ref|YP_127442.1| hypothetical protein lpl2107 [Legionella pneumophila str. Lens] gi|53754859|emb|CAH16347.1| hypothetical protein lpl2107 [Legionella pneumophila str. Lens] Length = 676 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%) Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 S +P+ N + +++ V +T V LT+ EA A++ K +F+ ++S+++R+PLT + Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG ++LL+ + + +Q + + S LLN++NDILD V AG M I Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354 Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701 DL ++ + K+ +K ++ GK + ++ +DR+++ ++ +L NA+ F Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412 Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + KG I L+ + N F V + G IP + + VF RF +S +++G +G G Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL I +S++NL GGH+++ S + TT IP + Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508 >gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera sp. 301] gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera sp. 301] Length = 975 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + +L + E+ AD IK+ FV +S+ELR+PL +IIGF ++ G LN Sbjct: 709 DITQKKVLQASLIKARESAESADRIKSMFVASMSHELRTPLNSIIGFLGVVLQGMSGDLN 768 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIAT 660 +KQ + S+ LL+L++D++D++ ++AG ++++ + L + NEV IA Sbjct: 769 TKQKDQLGRAYHSAKHLLSLISDVIDISKIEAGFLEIHTESFALKPMFNEVVNVIHHIAD 828 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 H N++I D L + DR+RL Q ++SNA+ ++ GS V ++A N + I Sbjct: 829 GKHL-NLQIDCSEDIILET---DRKRLYQAILNVVSNAVKYTEAGS-VTVEAKIINEELI 883 Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAH-RGQRRGVGLGLSIVESFI-NLHGGHVSISSS 777 + ++ G I + +F F + +H + + G GLGL + + L GG + + S Sbjct: 884 ITTQDTGIGISPSGLEQLFKPFERAESHLKIKTLGTGLGLYLTRKILTQLLGGSIEVESQ 943 Query: 778 DEGVTTINCRIPSK 791 +T R+P K Sbjct: 944 VGVGSTFTIRVPVK 957 >gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 679 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 2/251 (0%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ E+++ E KA K+ F+ ++S+ELR+PL ++GF+ +L+ K L+ Sbjct: 422 DISERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQILQMDKSAPLD 481 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + QS+ V+ I + LL L+N+ILDLA +++G + + + + ++ E I Sbjct: 482 NSQSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPIIEETVAFIKPLAK 541 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 EN+I I + + +V AD RL Q+ + SNA+ ++ V + + F+ Sbjct: 542 ENDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSFYCEKIDKFIRFN 601 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + ++G IP ++F+ F G G+GL+ + + L GG++++ S + Sbjct: 602 ILDSGLGIPSAQLPAIFDPFYRLPITANNVEGTGIGLAAAKQLVELMGGNINVKSQEGQG 661 Query: 782 TTINCRIPSKE 792 + IP E Sbjct: 662 SHFWFDIPCAE 672 >gi|228934496|ref|ZP_04097331.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825133|gb|EEM70930.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 448 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNQGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 964 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 131/252 (51%), Gaps = 12/252 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594 A +L F +T + + L E +A K++F+ ++S+E+R+P+ ++IGF+ L L Sbjct: 274 ALMVLGFAEITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLAL 333 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 KT+ L+ +QS Y+ I S+ LL L+ DILD + ++AG + + L+++L+ V Sbjct: 334 KTN----LDKQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSV 389 Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 A + E + + L + + D RL Q+ + ++SNA+ F+++G +L Sbjct: 390 AALNANRAEEKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTEGHVQVLVEP 449 Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 + FSV ++G + + +F F V +H + G GLGL+I + + + Sbjct: 450 LHQQEQELLLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEM 509 Query: 768 HGGHVSISSSDE 779 GG +S+ S ++ Sbjct: 510 MGGSISVRSQEQ 521 >gi|75812473|ref|YP_320092.1| response regulator receiver hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705229|gb|ABA24903.1| response regulator receiver hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 519 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 7/241 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+A T N A+ +K+ F+ +S+ELR+PL I+G+ +L S +K++ +E Sbjct: 121 EQAETRANA--EAANRLKDEFLVTLSHELRTPLNAILGWAQILLKQTPNSSTTKRA--LE 176 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ +V DILD++ + G L + + L ++N V S+ + I ++ Sbjct: 177 TIVRNAKTQARIVEDILDISGIITGKFSLQVAPVDLVAIINTVIASVNPAIATKAIHLEA 236 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 G + D RL QIF +L NA+ F+ + ++L+ + N D + +VK+ G I Sbjct: 237 KLAPLDGQVLGDETRLQQIFGNLLLNAVKFTPEHGYILLQVKQVNIDAVITVKDTGIGIN 296 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 + VF+RF R RG+GLGL+I LHGG + +S EG T ++ Sbjct: 297 AEFLPFVFDRFSQADSSTTRSYRGLGLGLAIARQLTELHGGTIEATSLGEGYGATFTVKL 356 Query: 789 P 789 P Sbjct: 357 P 357 >gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 731 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 8/239 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + V S R E L + E KA++ K+ F+ ++S+ELR+PL +IIGF+ L++ Sbjct: 318 LEVLVSQRTEE-LNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEG 373 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++++Y++ I S LLN++NDILDL+ ++A + LN S L +L++ + I + Sbjct: 374 MERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEA 433 Query: 663 HENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + K +F AD +R+ Q+ +L NA+ F+ +++ + +F Sbjct: 434 ITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQ 493 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +V+++G IP + +F F V R G GLGL IV+ + H G + + S+ Sbjct: 494 LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESA 552 >gi|301054746|ref|YP_003792957.1| histidine kinase [Bacillus anthracis CI] gi|300376915|gb|ADK05819.1| histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] Length = 1238 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 19/245 (7%) Query: 551 AERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 A R + E N + L+ E K F+ +S+ELR+PL IIG +D L G +N + Sbjct: 309 AMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQ 368 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKM 662 + + I S LLNL+NDILD A++ G + + + + L ++++V Q +A + Sbjct: 369 ALKTITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR- 427 Query: 663 HENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 +K+++D + + + D R++Q+F ++ N+ F+ G I + +D+ + Sbjct: 428 -----GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHNGFISIAASVKDD-EVE 481 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +V + G IPED +F F R+ G GLGL++V+ + HGG +S+ S + Sbjct: 482 VAVSDTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKE 541 Query: 779 EGVTT 783 TT Sbjct: 542 GQGTT 546 >gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1688 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 19/267 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT +R + EK EA +A++ K++FV VS+E+R+PL+ +IG +DLL + Sbjct: 552 TLRDVTSRKDMQRLILEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 607 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN +Q YV+ I SS LL ++NDILD + +++ +K+ + + V ++ Sbjct: 608 VLNEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSIIETGQAVIYMLSV 667 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------L 710 +++ + + + D R+ Q+ ++SNA+ F+S G + L Sbjct: 668 ATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHVLCDISVVESLNPL 727 Query: 711 KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI- 765 ++R + +V++ G IP+ + +++F F + R+ G GLGLSI + I Sbjct: 728 HSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGGTGLGLSITKRLIE 787 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 + GG + +SS+ +T C IP K+ Sbjct: 788 EVMGGTIHVSSTVGLGSTFKCTIPFKK 814 >gi|220916345|ref|YP_002491649.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954199|gb|ACL64583.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 601 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E A+R D++ + VS++L++PL I + LL S + ++ E I S Sbjct: 377 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSSALLLRS---GAAPRLRRHAETIQRS 429 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + L+ ++LDL+++DAG + + L+ ++ E ++ E I + + G Sbjct: 430 AARMDRLIRELLDLSSIDAGRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGA 489 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 DR+R+LQ+ S ++ NA+ F+ +G V ++A + V+++G I + Sbjct: 490 REPVPCDRERILQVLSNLVGNALQFTPRGGHVTVRATLAPTEARVEVRDDGPGIAPAQLR 549 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF+R+ + G RRG GLGLSI + + HGG + + S +T +P + Sbjct: 550 RVFDRYWKS---GSRRGSGLGLSIAKGLVEAHGGRIEVESRLGAGSTFRFTLPRR 601 >gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1225 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 23/249 (9%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA A+ K+ F+ +S+ELR+PL I+GF L+ S+ + QY+E IS + Sbjct: 736 EAADAANLAKSEFLASMSHELRTPLNAILGFAQLMNYD--SSIKVEHHQYLEIISRAGEH 793 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLNL+NDIL+++ ++AG + L L LL +++ + K + + D L Sbjct: 794 LLNLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFELDETLPQ 853 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------------FS 722 +V D ++L Q+ +L NA F+ G V L++ R N + F Sbjct: 854 WVRGDEKKLRQVLINLLGNATKFTESG-CVTLRSFRVNQAKVRETENSLIKNDALRIRFE 912 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I E+ K +F F S G + G GLGLSI + F+ L GG +++ S Sbjct: 913 VADTGLGIAENELKRLFQAF-SQTTTGLKSGEGTGLGLSISQQFVQLMGGEITVKSQVNV 971 Query: 781 VTTINCRIP 789 +T IP Sbjct: 972 GSTFAFEIP 980 >gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] Length = 576 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 26/275 (9%) Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 ++E ++I + + + V V + L E A++ K+ F+ +S+E+R+PL Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLARAREEAELANQSKSEFLAMMSHEIRTPL 230 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 +++G D+L+ S +L+ +Q + + S+ +LL +++DILDL+ +++G +LN Sbjct: 231 NSVLGMLDILRQS---TLSDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQW 287 Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 I LND ++++ KQ TK N ++ SD + + D RL QI ++ NA+ Sbjct: 288 IHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQ---YWIDSTRLSQILFNLIGNAIK 344 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GV 754 F+ GS V + A +N + + S+ + G I +F F H+G R G Sbjct: 345 FTDSGS-VSVSVAEENDEVVVSISDTGIGISRAKQAHLFTAF----HQGDRSITRRFGGT 399 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + + + G +S+ S + + RIP Sbjct: 400 GLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434 >gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 935 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q + T +++T + E L +A + A + K+ F+ ++S+E+R+P+T I+G+ +LL Sbjct: 523 QLVGTMLDITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGE 582 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L ++ +++ I + LL+++++ILDL+ ++A +++N+ L ++ +V+ Sbjct: 583 H---DLPAEACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRS 639 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + E +++I+V DGKL + +D +RL QI ++ NA+ F+ +G V L Sbjct: 640 IMDVRASEKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQGH-VDLAVRYV 698 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +G F + ++G + +D +F F R G GLGL+I + GG + Sbjct: 699 DGHLQFDITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIY 758 Query: 774 ISS 776 + S Sbjct: 759 VQS 761 >gi|298241884|ref|ZP_06965691.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554938|gb|EFH88802.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 854 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 27/244 (11%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELRSPLT + L+T+ L +KQ I AS+ Sbjct: 620 NSARKELEQRKDDFISMASHELRSPLTAM-----KLQTTLLHRQLAKQG-----IPASAP 669 Query: 619 ILLN----------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 L + LV ++LD++ + AG ++ T+ L+ LL E IA M + + Sbjct: 670 ALSSMETQINKVSRLVEELLDVSKIQAGRLEYRQETVDLDALLWE----IADTMQQTHPS 725 Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +++ G + S +ADR RL Q+F+ +LSNA+ +S TV + + V ++G Sbjct: 726 YRILVHGAVRASLMADRDRLGQVFTNLLSNAVKYSPDAQTVEMDLSTSQETVTIRVHDHG 785 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP + + +F+RF Q+ G+G+GL IV + HGG + + S+ +T Sbjct: 786 LGIPREQREKIFDRFYRATGPSQKAIPGLGMGLYIVAEIVKHHGGTIMVESTVGKGSTFT 845 Query: 786 CRIP 789 IP Sbjct: 846 VTIP 849 >gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1248 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++AD K+ F+ +++ELR+PL + +LL + + Q++ + + IL Sbjct: 872 LQQADRQKDEFLAMLAHELRNPLAPVRHAIELLAAAP--DDAALQARVTPILMRQTDILG 929 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L+++ + G++ L T+ L+ L + ++ + + ++VI + L FV Sbjct: 930 RLVEDLLEVSRITRGLITLRRETVSLDSLAAQAADAVRPFIEQRRHALEVIGEAGLPVFV 989 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL+Q +++NA ++ G V ++ R + + V +NG IP+++ VFN Sbjct: 990 -DPSRLVQCVVNLMNNAAKYTEPGGRVRVETFRRDAWAVLRVADNGRGIPQELLPHVFNL 1048 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 FV RR G+G+GLSIV +++HGG V + S+ G Sbjct: 1049 FVQGERTLDRREGGLGIGLSIVARLVDMHGGTVGVESAGAG 1089 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 4/222 (1%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EAL + D K +F ++S+E R+PLT ++G + + + + + Sbjct: 312 KRAEALAEIDRGKTAFFSNISHEFRTPLTLLLGPLE--DACAHAGVPEPVREQLRIAHGN 369 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL LVN +LD A ++AG ++ + L L ++ + + + +V Sbjct: 370 SARLLRLVNALLDFAQIEAGRLRATFRPTDLAALTRDIASRFRSTVERGGLAFEVDCPAL 429 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 G D +I S +LSNA F+ GS + A +F V + G I + Sbjct: 430 PGPVHVDADLWEKIVSNLLSNAFKFTLHGSIRVSLRAGAARTVVFEVADTGVGIAPADRE 489 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 +F RF +G R G G+GL++ + + HGG + ++S Sbjct: 490 RLFERFYRVEGQGGRSMEGAGIGLALAKELVAAHGGTIEVAS 531 >gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 576 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 26/275 (9%) Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 ++E ++I + + + V V + L E A++ K+ F+ +S+E+R+PL Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLARAREEAELANQSKSEFLAMMSHEIRTPL 230 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 +++G D+L+ S +L+ +Q + + S+ +LL +++DILDL+ +++G +LN Sbjct: 231 NSVLGMLDILRQS---TLSDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQW 287 Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 I LND ++++ KQ TK N ++ SD + + D RL QI ++ NA+ Sbjct: 288 IHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQ---YWIDSTRLSQILFNLIGNAIK 344 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GV 754 F+ GS V + A +N + + S+ + G I +F F H+G R G Sbjct: 345 FTDSGS-VSVSVAEENDEVVVSISDTGIGISRAKQAHLFTAF----HQGDRSITRRFGGT 399 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + + + G +S+ S + + RIP Sbjct: 400 GLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434 >gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] Length = 878 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L E A + K+ F+ ++S+E+R+PL IIG ++L S L +S Q + + Sbjct: 371 ERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHL---SSSQKEILS 427 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS LL L+NDILDL+ +++G + L+ T+ L +++ + + +K + ++ +KV Sbjct: 428 DIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKALKQDVELKV 487 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +D + D R Q+ +LSNA+ F+ +GS V ++ + + V ++G I Sbjct: 488 DFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQGS-VSVELLIEGQQLVCHVADSGVGI 546 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + +F F RR G GLGL+I I + G +S+SS+ + + Sbjct: 547 SPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPGVGSRFTVSV 606 Query: 789 P 789 P Sbjct: 607 P 607 >gi|28199692|ref|NP_780006.1| histidine kinase/response regulator hybrid protein [Xylella fastidiosa Temecula1] gi|28057813|gb|AAO29655.1| histidine kinase/response regulator hybrid protein [Xylella fastidiosa Temecula1] Length = 499 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++ERA +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + + Sbjct: 234 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 286 Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662 Y + I++S+ + L++D+LDL+++ G M+L + L + + EV +Q + +K Sbjct: 287 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 346 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + LG D RL QIF +LSNA+ F+ + ++ D F S Sbjct: 347 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 402 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + +F+RF R G+GLGL+IV+S + +HGG+V +S G Sbjct: 403 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 462 >gi|315143580|gb|EFT87596.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX2141] gi|315174226|gb|EFU18243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Enterococcus faecalis TX1346] Length = 393 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] Length = 1426 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 14/261 (5%) Query: 540 LTFVNVTDSVRAER---ALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VTD + +ER A EK +L KA++ K+ F+ +S+++R+P+ ++G T L Sbjct: 1011 LVRADVTDMLASERRTKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVMGMTTLAA 1070 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 S + ++ I +S LL+L+NDILD++ ++ + LN+S I ++DLL+++ Sbjct: 1071 AHLDDSARVRDC--LDKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAVSDLLSQLN 1128 Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712 IA + +N + ++ + F D R+ QI +LSNA+ F+ +G V L+ Sbjct: 1129 AMIAPQAADNGLSYSARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGGRVELRVEE 1188 Query: 713 -----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 A D + F V + G + E VF F + + + G GLGLSI + ++L Sbjct: 1189 IAPVKAPDAVRYRFIVSDTGVGMSEAFLIHVFEPFTRDRNVTRVEGTGLGLSITKGLVDL 1248 Query: 768 HGGHVSISSSDEGVTTINCRI 788 G ++ S + T + Sbjct: 1249 MEGEITAESQERAGTVFRVEL 1269 >gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 590 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/354 (23%), Positives = 158/354 (44%), Gaps = 33/354 (9%) Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501 ++++GV G + NPA R + + EE++L ++ A + Sbjct: 262 NMADGVIALNGRGEVIHINPAARRMLQLEEDQLG-----QDFAEKLREIFK--------- 307 Query: 502 AIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 + +D +K+ Q LE+L D L+ PL + ++ + + ++ L Sbjct: 308 ---INPEDFQKTEQTQLEVLVKVRDGTLKAIFAPLVGDGRVTGYILLLQDITKQQRL--- 361 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +E++ FV +VS+ELR+PLT I + + L L +S Q++ I+ + Sbjct: 362 -------EEMRKEFVANVSHELRTPLTTIKSYAETLLDGALDD-SSVARQFLSVINDEAD 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LVND+L+L+ +D + I ++ +L V + + + + ++ L Sbjct: 414 RMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPEDLP 473 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD ++ Q+F ILSNA+ ++ +G + +KA S+++ G IP++ + Sbjct: 474 KVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQVQVSIRDTGIGIPKEDLPRI 533 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F RF V Q G GLGLSI + H G + + S T + ++P+ Sbjct: 534 FERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLPA 587 >gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii PYR-1] Length = 1385 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 5/243 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R+ RA + E L + D +K +F ++S+E R+PLT I+ L+ ++ S++ + Sbjct: 330 ARSYRAQQRRAEELAELDRVKTTFFSNISHEFRTPLTLILDPVSELRRAE--SIDEPVRR 387 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ + + L LVN +LD + ++AG + Y + L L E+ + + + Sbjct: 388 ELDVVWRNGLRLTKLVNTLLDFSRIEAGRTQARYQPVDLGALTAELASMFRSAVERAGLT 447 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + D DR ++ +LSNA+ F+ +G+ V ++ RD + V + G+ Sbjct: 448 FDIDCDPLDEVVYVDRDMWEKVIFNLLSNALKFTFEGA-VSVRVRRDGHQAVVVVADTGT 506 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 +P D +F RF + NA G G+GL++V+ I LHGG + S++ T Sbjct: 507 GVPADEMPRLFERFHRIENAKARSNEGSGIGLALVKELIGLHGGTIVADSAEGQGTAFTI 566 Query: 787 RIP 789 R+P Sbjct: 567 RMP 569 >gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 812 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D IKN V +S+ELR+PL++I GFT+L+ L +Q +Y+ + + + L L+N Sbjct: 584 DRIKNELVSTISHELRTPLSSIYGFTELMIQRDLPP--HRQKKYLAAVHSETERLSLLIN 641 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D LDL ++A + + L ++ ++KQ + ++IRI S+ + D + Sbjct: 642 DFLDLQRMEANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRI--FSEETVQIINGDSK 699 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 ++ Q+F +++NA+ +S G + ++ N ++ + G IP +F +F V Sbjct: 700 KIRQLFGNLVNNAIKYSPDGGPIEIRVTEHNNRVTVALTDYGIGIPSSAMSELFQKFYRV 759 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N+ Q G GLGLSI H G + + S + +T +P Sbjct: 760 DNSDTRQIGGTGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLP 805 >gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1449 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 11/246 (4%) Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 M+ F N+T ++ L +A+ K+ F+ ++S+E+R+PL +IGFTDL+ + Sbjct: 787 MMMFTQNITSMIKQREELKNAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKT 846 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 K LN Q QY+ ++ S+ LL+++NDILD + ++AG ++L+ L ++ + Sbjct: 847 K---LNETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDI 903 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKA 712 I ++ + + + L F+ AD RL QI +L NA F+ +G +L Sbjct: 904 ITYQVQTKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGNASKFTDQGEIELKIEVLST 963 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 DN F V++ G I + +F F ++ G GLGL+I + L G Sbjct: 964 TGDNTSMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGS 1023 Query: 771 HVSISS 776 + + S Sbjct: 1024 KLQLES 1029 >gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] Length = 911 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL ++GFT +LKT L + Q Y++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 +++ND+LD + ++AG + L L L+E +A HE + + V+ D + + Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI ++ NA+ F+ KG + R + V+++G I E Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQT 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F RR G GLGL I + + GG ++ SS + +T R+ Sbjct: 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFMIRV 516 >gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 1236 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V + L + E RKA +K+SF+ ++S+E+R+PL ++G LLK LN K Q Sbjct: 493 VSRTKELMKATEEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKRQ---PLNDKAEQ 549 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V + S L L+ND+LDL+ ++AG + +N+ L+ + + A K + Sbjct: 550 LVSMMEISCNNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVFAVKAATKGLE 609 Query: 669 IKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSV 723 + V + G +DR RL Q+ S +L+NA+ F+ KG + A +N + FSV Sbjct: 610 LIVDTTGLPRVEINSDRHRLNQVLSNLLNNAIKFTEKGHIQLNAALYENDAGLQQLHFSV 669 Query: 724 KNNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776 + G I + +F F ++A Q G GLGLSI + L GG ++ S Sbjct: 670 SDTGVGIAPESQPKLFTAFTQADASVATQYGGTGLGLSICKQLTQLLGGDITFKS 724 >gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 947 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 32/270 (11%) Query: 540 LTFVNVTDSVRA--ERA--LTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTD 592 L+F ++T+ RA ERA L ++ A + A+++ K+ F+ VS+ELR+PL +I+G+ Sbjct: 530 LSFHDITEQKRADAERAQLLDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWAR 589 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L+T ++ + + ++ + I ++ L+ D+LD +T+ AG ++L + Sbjct: 590 ILRTGEVDAESLERG--LATIERNAKAQSQLIEDVLDASTILAGKLQLRTDPV------- 640 Query: 653 EVKQSIATKMHENNIRIKVISDG---------KLGSFVADRQRLLQIFSKILSNAMDFSS 703 +V+Q +AT + + +R ++ G +G F+ D +RL Q+ +L+NA+ F+ Sbjct: 641 DVRQVLATAL--DLVRPAALAKGVAVDTSVADDVGIFLGDAERLQQVVWNLLANAVKFTP 698 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760 G V A R V++NG IP+ +F RF A G R G+GLGL+I Sbjct: 699 SGGQVRALARRVEATLEVEVEDNGEGIPKSFLPFLFERF-RQADGGMTRAHGGLGLGLAI 757 Query: 761 VESFINLHGGHVSISSSDEGV-TTINCRIP 789 V GG V S EG R+P Sbjct: 758 VRHLAEAQGGSVHAESDGEGKGARFRVRLP 787 >gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134] gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134] Length = 1808 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+TDS E L + + KA + K F+ +S+E+R+P+ +IG T LL Sbjct: 1274 NITDSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEE---DHK 1330 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + ++ + S+ LL L+NDILD ++AG + L + +N +K + + Sbjct: 1331 PEQLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAA 1390 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------- 715 E I ++ + + + + D RL QI + +L NA+ F+ KG V+ ++ Sbjct: 1391 EKGIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDKGFVVVKVQLQETLPDKQN 1450 Query: 716 ----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 +FSVK++G I D ++F RF RR G GLGLSI + I G Sbjct: 1451 IPHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQG 1510 Query: 770 GHVSISS 776 G + + S Sbjct: 1511 GEIGLHS 1517 >gi|300857012|ref|YP_003781996.1| putative two component sensor kinase [Clostridium ljungdahlii DSM 13528] gi|300437127|gb|ADK16894.1| predicted two component sensor kinase [Clostridium ljungdahlii DSM 13528] Length = 363 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 148/292 (50%), Gaps = 7/292 (2%) Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 +F + D + + L LL++ +E +I P+ + T +D + L E Sbjct: 76 IFIKKMNKITDYIEEISRVLNLLAEGNMEVTI-PIRRKDELGTLA--SDVNKMAYDLNEL 132 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 + R+ + KN+ + ++S++LR+PLT+I+GF +L+ K + N K Y + Sbjct: 133 MKKERQWENQKNNLITNLSHDLRTPLTSILGFLELI--GKGTNNNEKLKHYCNISLEKAK 190 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L + ++ + + A ++ +KLN + I + +L+ +V +NN+ ++IS K Sbjct: 191 KLKSSIDQLFEFAKINNMDLKLNKTEIGIEELIEQVTMGFIPSFEDNNMEYRIISKSKGL 250 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD L + F I+SN++ ++S+G + + ++N + I N G I ++ ++ Sbjct: 251 KVNADPILLARAFENIISNSVKYASEGKYLDIIIDKENDNAIIKFVNYGEEIKQEDLANL 310 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FN+F +R G GLGL+IV++ + LH G ++ISSS E T ++P Sbjct: 311 FNKFYRVEKSCDKREGTGLGLAIVKTVMELHSGEINISSSKEK-TQFEFKLP 361 >gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] Length = 1343 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 FV+VT R E L + +A + K F+ ++S+E+R+P+ I+G + L + L Sbjct: 569 FVDVTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHL---ALLTD 625 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN KQ YV I + LL ++NDILD + ++AG + + + +++L+ + I+ K Sbjct: 626 LNDKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVK 685 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E + + D L V D RL QI + N++ F+ G +I + D + Sbjct: 686 AKEKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEI 745 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 I F +++ G + E+ +F F R+ G GLGL+I +SF+ L GG + + Sbjct: 746 IEIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWV 805 Query: 775 SSSD-EGVT---TINC 786 S +G T TI C Sbjct: 806 ESQPGKGSTFSFTIRC 821 >gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 798 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL+ +IG++++L ++ + I +++ LL L+ND+L Sbjct: 283 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESAARHLLGLINDVL 342 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG + L + + L+ +V + + + + R ++ +G LG+ D+ +L Sbjct: 343 DISKIEAGRLTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKLR 402 Query: 689 QIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 Q ++ NA FS G V + + ++G+++ F+V + G + ++ +F RF Sbjct: 403 QSLINLIGNAAKFSEDGEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFSQA 462 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 R+ G GLGL+I +FI GG + + S+ T R+P+ Sbjct: 463 DESTTRQFGGTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPA 509 >gi|111225753|ref|YP_716547.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153285|emb|CAJ65037.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1371 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 18/254 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L EK E L + + K F+ ++S+ELR+PL +++ LL + +L+ KQ + E I Sbjct: 809 GLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETI 868 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ + LL L+NDILDL+ V+AG M ++ +++ L + V E + +V + Sbjct: 869 HSAGSELLGLINDILDLSKVEAGKMDVDATSVRTAALCDAVAGVFGPVADEKGLAFEVNL 928 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------------RDNGDF 719 + F+ D QRL Q+ +LSN++ F+ G TV L R G Sbjct: 929 AADVPAEFITDEQRLQQVLKNLLSNSVKFTDSG-TVRLDVTLARPDLPHLASHLRSAGTV 987 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + F+V + G I + + +F F RR G GLGLSI + L GG +++SS Sbjct: 988 LSFAVSDTGIGIAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1047 Query: 777 SDEGVTTINCRIPS 790 + +T +P+ Sbjct: 1048 AVGHGSTFTLYLPA 1061 >gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b] Length = 909 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++NDIL Sbjct: 297 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 353 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 354 DFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 413 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 414 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 474 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 520 >gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 769 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L +K + + +++ +K++F+ ++S+E+R+PL I+GF++LL + + + + ++ E Sbjct: 534 EQELRDKAK-VEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEFCE 589 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ +LL LVNDILDL+ ++AG M YS ++ L + Q+ +++ + + + Sbjct: 590 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV-KGGVTLYC 648 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + +++ RL Q+ + L+NA F+ +GS + R++G + F VK+ G I Sbjct: 649 EIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKGIE 707 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TINCR 787 VF RF Q G GLGLSI ++ + NLHG S +G T TI C Sbjct: 708 RKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIPCA 765 Query: 788 I 788 + Sbjct: 766 V 766 >gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1017 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 148/294 (50%), Gaps = 19/294 (6%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 R S Q E++ + + + L A M + + ++ AL + E A+ K+ Sbjct: 491 RNSFQLWKEIVQEKSYPWRVEELQTAAEMRNTLMLAMLEFSQAALEQAAERAAIANRAKS 550 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 F+ +S+ELR+P+ I+GFT ++ S+ ++ + +++ IS S LL L+ND+L++ Sbjct: 551 QFLAKMSHELRTPMNAILGFTQIMSRSQ--NIPPEFQEHLGIISRSGEHLLTLINDVLEM 608 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689 + ++AG + L S + ++ +++ A K E + +++ + + +V D+ +L Q Sbjct: 609 SKIEAGQLVLTESCFDIVRFIHSIQEMFALKASEKGLMLRIEQEINVPPYVYGDQAKLRQ 668 Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKNNGSSIP-----ED------MC 735 I +LSNA+ F+ GS T+ +K + D I S V+ GS+I ED +C Sbjct: 669 ILINLLSNAIKFTINGSITLRIKVIPEIDDAIDSSKVEALGSAIALYLEVEDTGCGIALC 728 Query: 736 --KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +SVF F+ +G GLGLSI F L GG +++ SS + C+ Sbjct: 729 DLESVFEAFMQTERGRHAQGTGLGLSISRQFARLMGGDITVQSSLNQGSIFTCK 782 >gi|270158414|ref|ZP_06187071.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|289166747|ref|YP_003456885.1| sensory box histidine kinase/response regulator [Legionella longbeachae NSW150] gi|269990439|gb|EEZ96693.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|288859920|emb|CBJ13906.1| putative sensory box histidine kinase/response regulator [Legionella longbeachae NSW150] Length = 813 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 127/242 (52%), Gaps = 15/242 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ K F+ ++S+++R+PLT +IG +++L+ + L+ +++ + S LL Sbjct: 263 KQAEIAKTEFIANMSHDIRTPLTGVIGLSEILEKNLTNPLHKEEAHL---LYESGNQLLT 319 Query: 623 LVNDIL-DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF- 680 ++N+IL D+ A M ++ L ++++ + A + N+ D + F Sbjct: 320 MINEILEDVRAGSANDMDIHEEAFELRQCIDDLIKLEAPTIATKNLTFTCTVDSHVPQFI 379 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736 V+DR+++ I +L NA+ F+ G + F FSV + G IPE Sbjct: 380 VSDRKKIHHILLNLLGNAIKFTQAGGITLTVKPLSFTAFHTLLHFSVSDTGIGIPEMQKD 439 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT---TINCRIPS 790 VF +F V+ ++ G + G GLGL IV+S++ L GGH+++ S + EG T +NCRI Sbjct: 440 KVFEQFFRVNPSYEGNQTGYGLGLHIVQSYVTLLGGHLTLESKEGEGTTLSFDLNCRIGC 499 Query: 791 KE 792 KE Sbjct: 500 KE 501 >gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM 13855] Length = 720 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 127/255 (49%), Gaps = 11/255 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-------DLLKTS 597 V D +R E AL + EA +A +K++ + ++S+E+R+PLT+IIGF+ DLL+ + Sbjct: 451 VLDRLRREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEAT 510 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + S S++ I + LL+ ++ +L+L+ ++AG M L I L++L + Sbjct: 511 PADANPSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDE 570 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + E + +V + DR + ++SNA+ ++ +G V +++ R Sbjct: 571 LHPQAEEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVRSYRAED 630 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 + V++ G + D + VF F A G R G GLGL++ + I G + + Sbjct: 631 AAVVEVEDTGIGMDADTVEHVFEPF-RQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEV 689 Query: 775 SSSDEGVTTINCRIP 789 + ++ T + R+P Sbjct: 690 DTEEDAGTCVRLRLP 704 >gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. japonica str. M301072PT] Length = 343 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L +Q Y+ I S+ Sbjct: 19 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 74 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 LL+++N+ILD + ++AG + L+ L DLL + +A H + + V D Sbjct: 75 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 134 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730 L + D RL QI + ++SNA+ F+ +G T++ +A ++ SV++ G + Sbjct: 135 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 192 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 193 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 241 >gi|270293534|ref|ZP_06199736.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270275001|gb|EFA20861.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 649 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L A+ K ++K+SF+QH+++E+R+PL +I+GF+ LL KL + + +YVE Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + ++T LL+L+ +IL++A +D+ + ++ I ++ E + ++ + + ++ + Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KPGVELEYV 528 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730 + +F A RQ L + +L NA+ F+ +G + + D + F +++ G I Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D +F RF +G GLGL+I + L GG + + + G P Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645 Query: 791 KE 792 K+ Sbjct: 646 KD 647 >gi|262395232|ref|YP_003287086.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25] gi|262338826|gb|ACY52621.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25] Length = 784 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPED +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPEDELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|262404692|ref|ZP_06081247.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586] gi|262349724|gb|EEY98862.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586] Length = 785 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAELEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPETELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|262042771|ref|ZP_06015924.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039838|gb|EEW40956.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 755 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 240 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 296 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 297 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 356 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 357 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 407 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 408 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 467 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 468 SQPGKGATFTLTVHAPA 484 >gi|303313435|ref|XP_003066729.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240106391|gb|EER24584.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 762 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%) Query: 549 VRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+ R LTE+ A + ++K+ F+ ++S+E+R+P+ ++G LL ++ + Sbjct: 362 VKVVRDLTERKAAETRLIAAYEETSKLKSDFLANMSHEIRTPMNGVLGALSLLNST---A 418 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ Q +Y I S+++LL L+NDILD + + +G L + ++N V Q+ + Sbjct: 419 LSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSLTTDVFSVESIVNSVIQNCPPR 478 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716 E I +K I D S V D R QI ++ NA+ F+ KG T + RD+ Sbjct: 479 NPE--IEVKSIIDPGFPSHVKGDPLRFRQILQNLVGNAVKFTDKGYIHVRTCFKEDERDD 536 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 V ++G + ++ ++F F +A+ +R G GLGLSI +S L GG V Sbjct: 537 YSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQGTGLGLSICKSLAELMGGAV 594 >gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 577 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + + +Q +++E Sbjct: 305 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLKLI-LDGMADDSEEQQEFLEE 363 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670 S+ LLNL+NDILDLA ++AG M L + L +LL V A + + + +IK Sbjct: 364 AHKSALHLLNLINDILDLAKIEAGKMVLELEPVDLEELLTAVNNFTAPQAEQKGLTFKIK 423 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFI 720 + + QRLLQ+ ++ NA+ F+ +G V+ G Sbjct: 424 KPQTHTPITLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEIVKKKILCHEQEFPGIVK 483 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 SV + G + + +F +FV + G GLGL+I + + GG + S Sbjct: 484 ISVADTGIGVSLEQQAKLFEKFVQIDGSRTKAYGGTGLGLAISQKLVQAMGGQIDFYSMG 543 Query: 779 EGV-TTINCRIPSKE 792 EG+ T+ P +E Sbjct: 544 EGLGATVTFTTPLQE 558 >gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1067 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD + E L E E A+ K+ F+ +S+E+R+P+ IIG T LL ++L Sbjct: 385 ITDRKQVEDMLKEAVERAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQL---TR 441 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q + + S+ LL+++NDILD + ++AG ++ Y + L+ V +A ++ Sbjct: 442 EQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILAPRVKG 501 Query: 665 NNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-- 720 N+ + V+ G F D RL Q+ + NA+ F+ GS I ++A + D + Sbjct: 502 RNVELTYVVPPSARGVFYGDAGRLRQVLLNLAGNAIKFTEIGSVHIGIRAETEFDDMVRL 561 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V + G I ++ +F F RR G GLGL+I +++ GG + S+ Sbjct: 562 RIEVVDTGIGISDNAKSRLFTMFTQADSSTARRFGGTGLGLAISRRIVDMMGGEIGFDST 621 Query: 778 D 778 + Sbjct: 622 E 622 >gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 396 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 141/271 (52%), Gaps = 5/271 (1%) Query: 524 SVLEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 ++LE ++I + + FV + D + +AE AL A+ K+ F+ +VS+EL Sbjct: 124 AILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVSHEL 183 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL +I+GF+++L + G LN Q +YV+ +S + L ++N+IL+++ ++AG ++ Sbjct: 184 RTPLNSIVGFSEILLDGRCGGLNDVQRRYVQNVSNNGNHLSEIINEILEISKIEAGKAEV 243 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N + + EVK+S+ + NI + +L D+ + I +L NA+ Sbjct: 244 NLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLINAVK 303 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 F+S +V + A+ + + ++G IP + ++++F V + + + G GLGL Sbjct: 304 FTSDHGSVGIHASAISDMMHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGGTGLGL 363 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ + + L+ G + + S T ++ +P Sbjct: 364 ALTKKLVILNSGQMWVESEVNVGTKVHMMLP 394 >gi|99082681|ref|YP_614835.1| hypothetical protein TM1040_2841 [Ruegeria sp. TM1040] gi|99038961|gb|ABF65573.1| sensor histidine kinase protein [Ruegeria sp. TM1040] Length = 516 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 118/253 (46%), Gaps = 2/253 (0%) Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354 V EI + + + L++ +AIFD+NR L N ++L + +FL++ P+ Sbjct: 246 VDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMS 305 Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGT 412 + LR +PE N+ +W+ + + +++ +++TW LP+G V +P G Sbjct: 306 FFDRLRDQRMMPEPKNYSSWRHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAI 365 Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 ++FE++T ++ L ++ + +++ +DH+ + AVFG DG + SN A+ ++WKT+ + Sbjct: 366 AFLFEDITAEITLTRQFRSELELGQSILDHIDDAFAVFGADGSMVYSNTAYHTMWKTDPD 425 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 I + T + W + +R +++ + L + Sbjct: 426 ASFAKITITDACRTWQELSGPTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQS 485 Query: 533 LPNAQTMLTFVNV 545 L N M+ F + Sbjct: 486 LQNGSVMVRFQQI 498 >gi|328869028|gb|EGG17406.1| histidine kinase [Dictyostelium fasciculatum] Length = 1323 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 20/244 (8%) Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 A R L E + ALRKA+ E K +F+ +VS+E+R+P+ I+ D+L+ + +L++ Q Sbjct: 394 ARRKLMEADTALRKAEAVNEAKINFLTNVSHEVRTPINGILASVDILEKT---NLDNTQG 450 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ + S+ LL+L+ DILD + +++G M+L + +L E + + E + Sbjct: 451 DFLVCVKDSANYLLDLITDILDFSKIESGKMQLQPVEFNMITMLEETMNIVYSTTKERGL 510 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARD 715 + + D + VAD R+ QI LSNA+ F+S G VI + Sbjct: 511 ELILFVDPAIPIIVVADHYRIKQILLNFLSNAIKFTSTGQVVIRVNFVSCTPSVANPSST 570 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 F V+++G + ++ + +F F+ + G R +G GLGLSI + N+ GG ++ Sbjct: 571 EFKISFEVEDSGIGLRQEQIEKLFTAFLQFDNHGSRNFQGTGLGLSISKKLCNMMGGEIT 630 Query: 774 ISSS 777 + S+ Sbjct: 631 VKST 634 >gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1255 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 3/218 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ K+ F+ VS+ELRSPL I+G+ LL+T ++ +E I + + L Sbjct: 1025 QANRAKDEFIAVVSHELRSPLNAILGWAKLLQTRSFEPAMLRRG--LETIERNVETQVQL 1082 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + D+LD++ + G ++LN+ + L L+ E ++ + + + + D Sbjct: 1083 IEDLLDISRMVRGTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGD 1142 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL QIF+ +L+NA+ F+ G V ++ V + G I D +F+RF Sbjct: 1143 LHRLQQIFANLLTNAIKFTPAGGQVEVRLVNCGAQVQIMVIDTGKGIAADFLPYIFDRFR 1202 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 N R + G+GLGL+IV + LH G + +S+ G Sbjct: 1203 QGNDAREPQEGLGLGLAIVRHLVELHKGTIQAASAGPG 1240 >gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1292 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL ++L + KQ Y E I + Sbjct: 911 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL---DHKQRSYTESIRRAG 967 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 968 SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEVGLL 1026 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +LSNA+ F+ +G + L F V + G I D Sbjct: 1027 GDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINADQ 1086 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + + R G GLGL+I + GGH+ + S Sbjct: 1087 KVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1131 >gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 161/352 (45%), Gaps = 34/352 (9%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 GV V DGR+ L N +L+ +L+ + + Y E Sbjct: 115 GVMVLDRDGRVILVNKGLENLF----GKLNFTGEPKPLLEVIRNYELE------------ 158 Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEA 561 K L+ L L + E + LPN++T+L V ++ A+ + Sbjct: 159 ------KFLKEALANLKEMTREIEFL-LPNSKTILIHVTPLKDEHDQKVGLVAVFDDITE 211 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619 RK +++++ F+ +VS+ELR+PLT+I GF L+T G+L K +++ +++ + Sbjct: 212 ERKLEKMRSEFIANVSHELRTPLTSIKGF---LETLLDGALEDKTIAKHFLQIMNSETER 268 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L++D+L L+ ++A + ++L +L+ ++K +++ E + + L Sbjct: 269 LTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKELSFIISLPENLPL 328 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD + Q+ ++ NA+ ++ G + + AA VK+ G IPE+ K +F Sbjct: 329 VLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVVVKDTGIGIPEESQKRIF 388 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A + G GLGL+IV+ I LH G V + S + IP Sbjct: 389 ERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTIP 440 >gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] Length = 650 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE NE L++ D++K+ V VS+ELR+PLT+I G+ +L+ +G++ Q + Sbjct: 410 QAEELEKSYNE-LKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKC 468 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E + + L L++++LDL+ ++ G ++++ I L +L+ V ++ E NI I Sbjct: 469 LEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINI 528 Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 K+ + D+ R+ Q+ + ++ NA+ FS V ++A ++ + +NG Sbjct: 529 IY----KINDIIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQALKEGNSVHIKIIDNG 584 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+ +F+RF V + + + G GLGL++ +S I HGG + + S Sbjct: 585 PGIPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVES 635 >gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 784 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 14/231 (6%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +N A ++A + K++F+ ++S+E+R+P+ I+GF +L+ L +Q+ +++ I+ S Sbjct: 300 RNRA-QEASKAKSTFLANMSHEIRTPMNAILGFAQVLEQDP--DLTPRQAGHLKTITRSG 356 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL L+NDILD++ ++AG ++ + L D+L ++ +++ ++ + D L Sbjct: 357 NHLLRLINDILDMSKIEAGQVQSSPEDFGLVDMLEDMGLMFSSRAEAKGLQFILERDRHL 416 Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-------FIFSVKNN 726 G+ AD+ L QI +L NA+ F+S G V + A+D G+ V+++ Sbjct: 417 PGNIRADQGMLRQIMVNLLGNAVKFTSSGGVACRVRTEPAQDTGEKDDSRLRLTIEVEDS 476 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I E + +F F + G GLGL+I SF L GG + +SS+ Sbjct: 477 GPGIQEIDQQKLFEPFQQAEEGIKEGGTGLGLAISRSFARLMGGDIEVSST 527 >gi|167570252|ref|ZP_02363126.1| response regulator/sensor histidine kinase [Burkholderia oklahomensis C6786] Length = 656 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +LLK G +Q + + Sbjct: 37 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELLKE---GLRTPEQQRLL 89 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +RI+ Sbjct: 90 SLVQDSGQSLARVLNDILDHASIEAGQFAIERTRVDVRELVDSVTAMLAVHAHRKGLRIR 149 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D D + ++ + Sbjct: 150 LHVDADVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADVVDGSVEIVATIAD 209 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F FV A RG RR G GLGL+I L GG V+++S + T Sbjct: 210 TGIGIAADELRRLFTPFV-RARRGARRTEPGTGLGLAIARRLARLLGGDVTLASEEGRGT 268 Query: 783 TINCRI 788 T RI Sbjct: 269 TATARI 274 >gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 483 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 16/274 (5%) Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584 ++ P+ + ++ V V R ER L E A K F+ +S+E+R+PL Sbjct: 171 TVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPL 230 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T ++G DLL ++L +S Q QYV A+ LL+L+N ILDL+ ++AG +++ Sbjct: 231 TAVLGMADLLDKTRL---DSHQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVE 287 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703 L+ L+ + + + + + + S V D R+ Q+ ++ NA+ F+ Sbjct: 288 FDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTE 347 Query: 704 KGSTVI----LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 +G ++ L AA F +V + G IP + +F F RR G G Sbjct: 348 EGRVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTG 407 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL+I + + GG +S+ S + G +T IP Sbjct: 408 LGLAISRKLVTMMGGQISLVSREGGGSTFTMEIP 441 >gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 1321 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 8/235 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D++K F+ VS+ELR+PLT I G +L G+L ++ ++ ++ L++ Sbjct: 934 KRVDKMKAEFISTVSHELRTPLTAISGALGILTAGGAGTLPEAATRMLQIAHNNALRLIH 993 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGKLGS 679 LVND+LD+ + AG M+ I + LL V+QS+ A+ + ++ + D Sbjct: 994 LVNDLLDMEKLVAGKMQFE---IHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDDAM 1050 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL Q+ + LSNA FS V + R G +V ++G IPE +F Sbjct: 1051 VSVDSLRLEQVLANYLSNAAKFSPPNGQVWVNIRRRMGSVRVTVTDHGRGIPEAFRARIF 1110 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++F ++ Q+ G GLGL+I + I GG V S++ + +P ++ Sbjct: 1111 HKFSQADSSDSRQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELPCED 1165 >gi|170764179|ref|ZP_02633654.2| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|170661001|gb|EDT13684.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] Length = 821 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I ++ + D ++ +I +LSNA+ F+ G + + D Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 779 GSEFSILLPN 788 >gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 710 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 2/231 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L + +A++ K+ F+ +S+ELR+PL +IGFT LL+T + G LN KQ+ Sbjct: 316 RQQHDLEQAKLGADRANQAKSEFLSSMSHELRTPLNAVIGFTQLLRTERPGPLNEKQAGQ 375 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +++I LL L+N++LDLA ++ G + L+ I ++NE E + I Sbjct: 376 LDHILRGGQHLLELINEVLDLARIETGKLSLSVEVIDPVVVMNECLAFGRAYARERGVEI 435 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGS 728 G + D R QI ++SNA+ ++ V L A G FS+ + G Sbjct: 436 GEWQGGPVLPISVDYTRFKQILLNLISNAIKYNRADGRVTLTAQPWGTGMMRFSIADTGP 495 Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 I D +F F A G G+GL+I + + G + S + Sbjct: 496 GIARDKQAHLFEPFNRLGAESRDVEGTGIGLTITKRLVQAMNGLIGFHSQE 546 >gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 993 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 15/280 (5%) Query: 525 VLEYSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +L +S+ P+ ++TF ++T + AL + +A A+ K+ F+ ++S+E+R+ Sbjct: 268 MLTFSVNCTPIAGQGYLVTFEDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRT 327 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++GFTD+L+ L S + ++ I S LL L+NDILDL+ +++G ++ Sbjct: 328 PLNAVLGFTDVLRRG-LVSNGDEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTET 386 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 L+D++ +V ++ K E N+ +KV + + +D RL Q+ + ++ NA+ F Sbjct: 387 IDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKF 446 Query: 702 SSKGSTVILKA-------ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 + GS I+ + A + D I V + G + D +F+ FV R+ Sbjct: 447 TESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRK 506 Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSI GG +++ S +T +P+ Sbjct: 507 FGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRVELPT 546 >gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1061 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL + SL++KQ Y E I + Sbjct: 779 KQEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYTESIRRAG 835 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 836 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFS-LEVGLL 894 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +LSNA+ F+ +G + L F V + G I + Sbjct: 895 GDITASGDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 954 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGH+ + S Sbjct: 955 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 999 >gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 575 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 14/238 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L+K + +++ FV +VS+EL++PLT+I GF + LK G+++ K +++ I Sbjct: 339 LKKLERVRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVAIKFLNIIEVEVER 395 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKL 677 L+ L+ND+L L+ ++ M + + + +++ E + + K + NI+ IKV ++ Sbjct: 396 LVRLINDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGLEM 455 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 + R L QIF ++ NA+ ++ + V + + NG + VK+ G IPE + Sbjct: 456 NIY---RDWLKQIFINLIDNAIVYNKENGKVWVTLEKPNGMVVIKVKDTGIGIPEKEIER 512 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF +G+ R G GLGLSIV+ + L+GG + + S + + IP K+ Sbjct: 513 IFERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIPIKK 569 >gi|152972133|ref|YP_001337279.1| aerobic respiration control sensor protein ArcB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896716|ref|YP_002921461.1| aerobic respiration control sensor protein ArcB [Klebsiella pneumoniae NTUH-K2044] gi|150956982|gb|ABR79012.1| aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549043|dbj|BAH65394.1| aerobic respiration sensor-response protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 779 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 492 SQPGKGATFTLTVHAPA 508 >gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1358 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 8/244 (3%) Query: 540 LTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 L +V++ RA E + EAL K D+ K +F ++S+E R+PLT ++G + Sbjct: 369 LVGAQAATAVQSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQ 428 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L +Q + + LL LVN +LD + ++AG +K Y L+ ++ Sbjct: 429 DTGEPLPPRQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLAS 488 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715 + + M + + ++V DR+ ++ +LSNA F+ G V L+A D Sbjct: 489 AFRSLMEKAGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEAD 548 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + +V ++G+ IPE VF RF V A G G+GL++++ + LHGG +S Sbjct: 549 RA--VLTVADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLS 606 Query: 774 ISSS 777 + S+ Sbjct: 607 VESA 610 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+VT+ V A R E L+ AD+ K+ F+ +++ELR+P+ I +L+ S+ Sbjct: 935 VDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSE--GD 992 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K +++ E L+ LV+D+LD++ + G M+L T+ DL V+ ++A Sbjct: 993 TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETV---DLAVLVQNALAVTR 1049 Query: 663 HENNIRIKVISDGKL-GSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NG 717 R +S + G F AD RL Q+ +L+NA ++ G + + +R+ NG Sbjct: 1050 PLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNG 1109 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 + VK+ G IP DM VF FV A R G+GLGL++V+ + +HGGH Sbjct: 1110 TRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAE 1169 Query: 774 ISSSDEGV-TTINCRIP 789 S G + R+P Sbjct: 1170 AFSQGPGQGSEFTVRLP 1186 >gi|20271014|gb|AAM18499.1|AF494374_1 ethylene receptor 1 [Arabidopsis lyrata subsp. lyrata] Length = 505 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 + DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|83720083|ref|YP_443190.1| sensor histidine kinase/response regulator [Burkholderia thailandensis E264] gi|167620368|ref|ZP_02388999.1| sensor histidine kinase/response regulator [Burkholderia thailandensis Bt4] gi|257139424|ref|ZP_05587686.1| sensor histidine kinase/response regulator [Burkholderia thailandensis E264] gi|83653908|gb|ABC37971.1| sensor histidine kinase/response regulator [Burkholderia thailandensis E264] Length = 651 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 32 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A + H +R++ Sbjct: 85 SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVQAHRKGLRVR 144 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D D + +V + Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRATDAVDGSVEIVATVVD 204 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F FV A RG RR G GLGL+I L GG V+++S + T Sbjct: 205 TGIGIAADELRRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263 Query: 783 TINCRI 788 T RI Sbjct: 264 TATARI 269 >gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 962 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 45/361 (12%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---NRLSPGTHIRNIAAT------CSR 489 D + EGV +G+ + NPA L W EE R H + T C Sbjct: 137 DSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLLKREQCPV 196 Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVT 546 DG TS++D +G L SI+ +P N V V Sbjct: 197 NLTIRDGKSY-----TSYEDFFTDKRGRL-------FPISIVAVPLLNNEGKPDGHVGVF 244 Query: 547 DSVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 + + +++A+ K +EA + A++ K F+ +S+E+R+P+ IIG T L L+T Sbjct: 245 NDISSQKAIEHKLQKAYDEA-QSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQD-- 301 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 N ++ QY+E + SS LL L+N ILD + V+A + + L ++++ Q Sbjct: 302 --NDQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQV 359 Query: 661 KMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 K + +++++ D + + + D +++ Q+ +LSNA+ F+ G V+LK + Sbjct: 360 KAQQK--QLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTETGH-VLLKIDKRGN 416 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + FSV + G I + +FN F R+ G GLGL+I + + L GG ++I Sbjct: 417 ELGFSVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIE 476 Query: 776 S 776 S Sbjct: 477 S 477 >gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 685 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 27/267 (10%) Query: 534 PNAQTMLTFVNVTD---SVRAERALTEKNEALRK--------------ADEIKNSFVQHV 576 P+ + + + D +V+ E+ L E+ L + A++ K+ F+ ++ Sbjct: 115 PHGEKRFVLIQIQDISHTVQREQLLQEQTRVLMQREEELTASRLKADQANQAKSEFLANM 174 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+P+ IIG DLL ++ LN Q +YV+ + + LL L+ND+LDL+ V+A Sbjct: 175 SHEIRTPMNAIIGMADLLLETE---LNKDQRRYVQIFARAGASLLELINDVLDLSKVEAD 231 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695 ++L + L L+ + + E +++ + +V +D++RL QI +L Sbjct: 232 RLELEHRPFDLWALVEGAVEIFTLRTQEKGVKLDFELSARAPRYVISDQKRLRQILVNLL 291 Query: 696 SNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 NA+ F+ G + RD G F V+++G + + KS+F FV R Sbjct: 292 GNAVKFTQSGQIQLWVDVRDCEDAGGWLYFRVQDSGIGMSKAQQKSIFEPFVQADASVTR 351 Query: 752 R--GVGLGLSIVESFINLHGGHVSISS 776 + G GLGL+I + + L G + + S Sbjct: 352 QHGGTGLGLAICKKLVELLSGDIWLES 378 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1381 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A + E L + D K +F ++S+E R+PLT I+G D L+ +L + + Sbjct: 328 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELR-GRLQGADEQVR 386 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I + L NLVN +LD + ++AG M+ Y + L + ++ + + + Sbjct: 387 TELDVIRRNGLRLGNLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGL 446 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V DR ++ +LSNA+ F+ G T+ ++ D + + + G Sbjct: 447 SFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTFDG-TIRVELRADGDAAVLRISDTG 505 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +P D +F RF + NA G G+GL++V+ + LHGG + SS+ TT Sbjct: 506 IGVPADEMPRLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFT 565 Query: 786 CRIP 789 R+P Sbjct: 566 IRLP 569 >gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1] Length = 1252 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ++ E L + E A++ K+ F+ ++S+E+R+P+ ++G L+ S +L+ Sbjct: 496 DLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 552 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+E +++ LL L+NDILD + ++AG ++L+ L DLL ++ ++ Sbjct: 553 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 612 Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 + + + V +D + D R+ Q+ ++ NA+ F+ KG IL + R Sbjct: 613 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 669 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + FS+K+ G I + ++F+ F RR G GLGL+I + +NL GG + Sbjct: 670 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 729 Query: 774 ISS 776 + S Sbjct: 730 VES 732 >gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 982 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 148/268 (55%), Gaps = 19/268 (7%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N + +L + T + +AL++ A A++ K++F+ ++S+++R+P+ IIGFT L Sbjct: 437 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTL- 495 Query: 595 KTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + ++++K+ Y+ I +SS LL+L+NDILD++ +++G + L + + L+D+L+ Sbjct: 496 ---AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLH 552 Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++K I+ ++H + + + + D D+ RL QI +LSNA+ F+ G + ++ Sbjct: 553 DLKTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVR 612 Query: 712 ------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIV 761 R+ + VK+NG + ED + +F+ F S R Q G GLG++I Sbjct: 613 LKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQ--GTGLGMAIT 670 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ +++ GG++ I + T R+P Sbjct: 671 KNIVDMMGGNIEIQTEQGKGTEFIVRLP 698 >gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 402 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 2/230 (0%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + + +N L +A +K+ F+ +S+ELR+P+ I+GF+ LL L +Q Sbjct: 155 RQRKQIERQNRKLAEASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLVPQQLDM 214 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I ++ LL ++N++LD + ++AG +L + L + Q + + E + + Sbjct: 215 VQRIFNNAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTL 274 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +V + + + D+ + Q+ ++SNA+ F+ G I + N I +VK+ G Sbjct: 275 EVNINLEEPMIINDQNSIRQVLVNLISNAIKFTDSGGVWINVQEQANDQLIIAVKDTGVG 334 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I D + +F F ++ + + G GLGL+IV+S + L G V++ S Sbjct: 335 IASDHLQEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQ 384 >gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 683 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 12/242 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A + E +A +K+ F+ VS+ELR+PL ++G+ LL K+ +E I Sbjct: 289 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 346 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ ++L++D+LD++ + +G + L + L D+L +++I + NI I Sbjct: 347 ERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARETIEPMARQKNITIDT-E 405 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + D RL Q+F +L+NA+ F+ +G + L + +V++ G I Sbjct: 406 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPEGVVATVRDTGIGIEPA 465 Query: 734 MCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCR 787 +F+RF +SN R G+GLGL+I + + LH G ++ +SS D G TT+ Sbjct: 466 FLPHIFDRFQQADLSNTRR--HGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVS 522 Query: 788 IP 789 +P Sbjct: 523 LP 524 >gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1] gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1] Length = 1838 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1333 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFA 1392 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1393 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1452 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1453 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGTDVPPAIREQLLEA 1512 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +GD I FSV + G I +F F R+ G GLGLSI Sbjct: 1513 GSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1572 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1573 LLGGEIHAASEPGRGSTFTLYLP 1595 >gi|330901046|gb|EGH32465.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 1003 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ LG N + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ ++ + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLSLSVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 645 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1311 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 8/244 (3%) Query: 540 LTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 L +V++ RA E + EAL K D+ K +F ++S+E R+PLT ++G + Sbjct: 322 LVGAQAATAVQSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQ 381 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L +Q + + LL LVN +LD + ++AG +K Y L+ ++ Sbjct: 382 DTGEPLPPRQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLAS 441 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715 + + M + + ++V DR+ ++ +LSNA F+ G V L+A D Sbjct: 442 AFRSLMEKAGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEAD 501 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + +V ++G+ IPE VF RF V A G G+GL++++ + LHGG +S Sbjct: 502 RA--VLTVADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLS 559 Query: 774 ISSS 777 + S+ Sbjct: 560 VESA 563 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+VT+ V A R E L+ AD+ K+ F+ +++ELR+P+ I +L+ S+ Sbjct: 888 VDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSE--GD 945 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K +++ E L+ LV+D+LD++ + G M+L T+ DL V+ ++A Sbjct: 946 TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETV---DLAVLVQNALAVTR 1002 Query: 663 HENNIRIKVISDGKL-GSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NG 717 R +S + G F AD RL Q+ +L+NA ++ G + + +R+ NG Sbjct: 1003 PLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNG 1062 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 + VK+ G IP DM VF FV A R G+GLGL++V+ + +HGGH Sbjct: 1063 TRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAE 1122 Query: 774 ISSSDEGV-TTINCRIP 789 S G + R+P Sbjct: 1123 AFSQGPGQGSEFTVRLP 1139 >gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] Length = 545 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++++K+ ++ I S Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L+ D+LDL+ ++ +LN T+ + +L ++ + K E I ++V + K S Sbjct: 369 MQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQV-NGLKRVS 427 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF +++NA+ ++ G V ++ D + V + G I ++ +F Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELLEDKYNAYIKVSDTGIGISKEEIPRIF 487 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S TT +P Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] Length = 1458 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ E+K F +VS+ELR+PLT I G LKT +L+ K +YVE + ++ +L Sbjct: 930 QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 986 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S L +LL ++ E I ++ + + Sbjct: 987 LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 1046 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D++RL + +LSNA F+S G ++ I+ ++G F V++ G IP++ +F Sbjct: 1047 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 1106 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF NA +G G+GL++ + + LH G + ++ +G Sbjct: 1107 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAANGKQG 1148 >gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 547 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLL---- 338 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + S + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 339 IESDDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K + + + + D D++RL+Q+ + ++NA+ F+++G ++ + ++ Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F+V + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIKHLGGTIGAE 514 Query: 776 S 776 S Sbjct: 515 S 515 >gi|323525402|ref|YP_004227555.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. CCGE1001] gi|323382404|gb|ADX54495.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. CCGE1001] Length = 955 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 117/215 (54%), Gaps = 7/215 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622 +++ ++NS + +S++LR+PLT I+GF+ +L S+ S ++++ + VE I + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREQSGDTRRDDELVEAIHEEALRMTG 735 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V ++LD+A + AG ++LN +L + + ++ + + +++ + +D L Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACRRVLAGHPVQVDLAADLPLLHL-- 793 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSV 738 D + ++FS + NA +++ G+ + + A R + D F+ +V +NG +P M V Sbjct: 794 DAVLMERLFSNLFENAAKYTAPGTPITIGAQRFDADGKSFVRVTVDDNGPGLPAGMETRV 853 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F +F + G+GLGL+I + + HGG + Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888 >gi|261211475|ref|ZP_05925763.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341] gi|260839430|gb|EEX66056.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341] Length = 782 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L S V D RL Q+ ++SNAM F+ G V+ +A + D V++ Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKDGGVVMTVSAECDEQHADITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTMRVP 509 >gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1153 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 17/246 (6%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 V+ T+ E A EK A+ A+E K+ FV ++S+E+R+P+ IIG + L L+T Sbjct: 362 LVDTTERKFREIAEREKQAAV-MANETKSLFVANMSHEIRTPMNAIIGLSSLALRTD--- 417 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L S+Q Y+ I S+ LL ++NDILDL+ ++AG + + L D LN + + ++ Sbjct: 418 -LTSRQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSV 476 Query: 661 KMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 K E + + + GK + D RL Q+ + NA+ F+ +G +I ++ R+ Sbjct: 477 KADEKGLDV-IFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVIIKVRREREAA 535 Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D FSV + G + +F F R+ G GLGL+I + ++L GG Sbjct: 536 DVQGSTLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGG 595 Query: 771 HVSISS 776 +S+SS Sbjct: 596 EISVSS 601 >gi|156467289|gb|ABU68266.1| putative ethylene receptor [Prunus salicina] Length = 741 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709 + + ++ + + +D + + V D +RL+QI + NA+ FS +GS I Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVAGNAVKFSKEGSISITAFVAKSE 490 Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 DN ++ VK++GS I P+D+ K +F +F R G G Sbjct: 491 SLRDFRSPEFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574 >gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 906 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 22/236 (9%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++AD +K F+ VS+ELR+PL IIGF+ ++ G + Q + ++ I+ + LL+ Sbjct: 624 QEADRLKGQFLAAVSHELRTPLNAIIGFSTVMLDEIDGPITPLQREDLKIINRNGRFLLH 683 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++++LDLA ++AG + L + + + L+ EV +++ +H I + ++ +L Sbjct: 684 LIDELLDLARIEAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACG 743 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-------GDFI------------ 720 D R+ Q+ +LSNA+ F+ +GS + AA +N G I Sbjct: 744 DAARIRQVLLNLLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIA 803 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV++ G I + +F F ++ G GLGL+I I HGG + + S Sbjct: 804 VSVRDTGIGIAAEDLTRIFEAFNQVRSGNRQHGSGLGLAISRRLIEAHGGRIWVES 859 >gi|42524989|ref|NP_970369.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39577200|emb|CAE81023.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 377 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 134/254 (52%), Gaps = 15/254 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N+ + + V++T+ E L + L++ ++ FV VS++L+SPL F + + Sbjct: 113 NSYAIASIVDITERKIIETRLKHAYDELQQKNQEMEQFVYTVSHDLKSPLVTSSSFIEFI 172 Query: 595 KTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 K K G++ ++ + + + L+ND+L L+ AG M+LN S + +ND++NE Sbjct: 173 KEDIKSGNMEDVHDS-IDRLEKAHKRMQELINDLLQLSR--AGRMELNLSDVSMNDIINE 229 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILK 711 + ++ + ++ + NI +++ +D L + DR+RL Q+ +++NA+ + SS + + Sbjct: 230 ILENFSDRLKDRNIEVQLPTD--LPKVIGDRRRLYQVLENLVTNALKYGTSSPHPQIQIL 287 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 + + VK+NG I + +F F + N+ + G G+GL+IV+ + LHG Sbjct: 288 TKDAPTEMLVGVKDNGPGIAPAYHRKIFGLFQRLDNS----QEGTGVGLAIVQRIMQLHG 343 Query: 770 GHVSISSSD-EGVT 782 G + S + EG T Sbjct: 344 GRTWVESRENEGAT 357 >gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22] gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1793 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1311 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFA 1370 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1371 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1430 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1431 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIKEQLLEA 1490 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1491 GSLRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1550 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + S +T +P Sbjct: 1551 LLGGEIHAQSEPGRGSTFTLYLP 1573 >gi|170745073|ref|YP_001766530.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658674|gb|ACB27728.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 589 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 8/221 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+PL I+GF DLL+ +L Q + V+ + +L +VNDIL Sbjct: 205 KSDFLATMSHEVRTPLNAIVGFGDLLRDDP--TLTPSQQRCVDQMRVGCEVLTTVVNDIL 262 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687 D A ++A + L + L+ E +A + ++ SD G + D+ RL Sbjct: 263 DYARIEADGVALEAAPFSPRALVEETVALVAGTAERKGLDLRWDSDAGTDQPLIGDKTRL 322 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVS 744 Q+ +++NA+ F+ +GS + + D + +V++ G IP D +F RF Sbjct: 323 RQVLLNLVNNAVKFTQRGSVTVALTQTPSPDGVALRVAVRDTGIGIPVDAQARLFTRFAQ 382 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 RR G GLGL+I + I GG + + S D +T Sbjct: 383 ADSSTTRRFGGTGLGLAIAKGLIETMGGTMGLDSRDGAGST 423 >gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 731 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 8/239 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 + V S R E L + E KA++ K+ F+ ++S+ELR+PL +IIGF+ L++ Sbjct: 318 LEVLVSQRTEE-LNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEG 373 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++++Y++ I S LLN++NDILDL+ ++A + LN S L +L++ + I + Sbjct: 374 MERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEA 433 Query: 663 HENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + K +F AD +R+ Q+ +L NA+ F+ +++ + +F Sbjct: 434 ITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQ 493 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +V+++G IP + +F F V R G GLGL IV+ + H G + + S+ Sbjct: 494 LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESA 552 >gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1137 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A+ +K+ F+ +S+ELR+PL I+G++ L+++ N + Sbjct: 731 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 787 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L+ V + + I Sbjct: 788 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKI 845 Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++ + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V++ Sbjct: 846 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQD 904 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 905 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 961 >gi|320585939|gb|EFW98618.1| sensor histidine kinase response [Grosmannia clavigera kw1407] Length = 2110 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 12/218 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A + K F+ ++S+E+R+PL I G L+ + +LN +Q Y I S++ LL Sbjct: 1416 LKEAMDSKTRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQNSASSLL 1472 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL++ L+ +V + ++T + + I + + +V Sbjct: 1473 MIINDILDLSKVDAGMMKLSFEWFHTRSLIEDVNELVSTMAIGKGLELNYIVEADVPGWV 1532 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFI--FSVKNNGSSIPEDM 734 DR R+ Q+ ++ NA+ F+++G +++ + + + FSV + G ++ Sbjct: 1533 KGDRVRMRQVLLNVIGNAIKFTARGEVFSCCRVVRPSPEPDRIVLEFSVTDTGQGFTKEE 1592 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 +F F + + Q G GLGL I + LHGG Sbjct: 1593 ADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1630 >gi|228915828|ref|ZP_04079404.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843809|gb|EEM88882.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 448 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I I+ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 585 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 3/216 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++IK+ F+ +S+ELR+PLT I+G++ LLK + N K + +E I ++ + LV+ Sbjct: 212 NQIKDEFLMMLSHELRTPLTAILGWSQLLKKGLITQKN-KVDKALETIERNAKLESKLVD 270 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD++ + A + L I L ++ SI I IK + D+Q Sbjct: 271 DLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQAKEITIKTLIQSPNLKVWGDKQ 330 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+F +LSNA+ F+ +G + + +DN + + G I ++ VF RF Sbjct: 331 RLQQVFWHLLSNAIKFTGEGGVITITLTQDNERAKIIIHDTGQGIKPELLPFVFKRFWQA 390 Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779 QR G+G+GLSI + LH G + S E Sbjct: 391 DSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGE 426 >gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1514 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 13/243 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + EA A + K+ F+ H+S+ELR+PL I+G+ ++++ L Q++++ I S Sbjct: 851 QSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRDP--QLGETQTEHLGIIGRS 908 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL+L+ND+L+++ ++AG + L + L LL+ ++ + K +++ Sbjct: 909 GEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYFERSAT 968 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG------DFIFSVKNNGS 728 + FV AD +L Q+ +L N ++++ KG ++ + +G F+V + G Sbjct: 969 VPQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPGRACQLTFAVMDTGP 1028 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I +F F + +R Q G GLGL I F+ L GG + + S+ +T Sbjct: 1029 GIKASDVDQLFEAFTQTDSGYRAQ-EGTGLGLPISRRFVQLMGGDIEVDSTVGQGSTFRF 1087 Query: 787 RIP 789 IP Sbjct: 1088 TIP 1090 >gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622] gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 981 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 3/225 (1%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ + S+E+R+PL IIG+ DLL + L + + + + ++ LL L+NDI Sbjct: 350 LKSEFLANFSHEIRTPLNGIIGYCDLLMREEGQRLTAHGRRDLNVVKTNAKTLLALINDI 409 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LDL+ +++G +++ + + +L E ++ + ++ + D +D +L Sbjct: 410 LDLSKIESGRVEVVTEQVDVQELAEECLATVKEYLKGKDVALTTNIDPSARMLRSDALKL 469 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 QI +LSNA F+ G V L + I +V++ G IP D +F +F V Sbjct: 470 RQIMLNLLSNAAKFTDAGE-VALSLVPAGSEVIMTVEDTGVGIPSDELPFIFEKFRQVDG 528 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + G GLGL+IV + GG+V+++S+ TT R+P+ Sbjct: 529 STTRKVGGTGLGLAIVRELSRVLGGNVTVTSTLGRGTTFTVRLPT 573 >gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 637 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 7/254 (2%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 YS++ + ++T ++T+ R E + + + A K+ F+ ++++ELR+PLT I Sbjct: 225 YSLLGDGSGILLVTSRDITERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAI 284 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IGF ++L+ S+ +LN ++ V +I +S LL++VND+LD + ++AG ++L+ + Sbjct: 285 IGFAEVLRRSR--NLNKTAARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDP 342 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706 + + +A + + ++V + L D RL Q+ LSNA+ F+S G+ Sbjct: 343 AAMASSCAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFTSHGAI 402 Query: 707 TVILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 TV L+ D + V + G I + +++F+RF RR G GLGL+I Sbjct: 403 TVALRQTIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISR 462 Query: 763 SFINLHGGHVSISS 776 I G + + S Sbjct: 463 RIIERMDGRIGVDS 476 >gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70] Length = 618 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 5/250 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V++ V AE+ L+ + + K K + +S+ELR+PL IIG + +L KL Sbjct: 98 VSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKL---TE 154 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q Y++ I S+ L ++ +DI+DL +DA ++LN + LN LN++ + Sbjct: 155 TQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQ 214 Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + ++++D L + F+ D RL QI ++ NA+ F+ +G + FSV Sbjct: 215 KKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSV 274 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP + VF + G + G G+GL+I ++ L GG + +S + Sbjct: 275 SDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGS 334 Query: 783 TINCRIPSKE 792 +P KE Sbjct: 335 CFTLMLPVKE 344 >gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 797 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 9/244 (3%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 TD R ER + E E + E K F+ +S+E+R+PL +IG T LL + + Sbjct: 407 TDKKRVEREMLEAKEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEN---DPRAS 463 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + + + S LLN++NDILD ++ G ++L + L ++ S+ + Sbjct: 464 QIEDLNILKFSGENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATKK 523 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF 721 ++++ D ++ D+ RL QI +L NA+ F+ +G + +L+ N F Sbjct: 524 GNILELLYDDQIPHLSGDKTRLYQILMNLLGNAIKFTDQGKIILSVKLLEQDAVNASLYF 583 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 + + G IPED +F F R+ G GLGL+I + + L+ + + S + Sbjct: 584 EISDTGIGIPEDKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSREG 643 Query: 780 GVTT 783 TT Sbjct: 644 AGTT 647 >gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina MBIC11017] gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 691 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 30/254 (11%) Query: 550 RAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGS 601 R ++ L +N+AL KA++ K+ F+ ++S+ELR+PL ++G+T LL + +L S Sbjct: 194 RQQQELIAQNQALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQS 253 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + +E I+ LL L+ND+LDL+ +D+G + LN T ++LL +K TK Sbjct: 254 FTKE----LETINRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTK 309 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--------STVILKA 712 + ++ L +V D +L Q+ +LSNA+ F+ +G +TV+ K Sbjct: 310 AQHKGLDYQLEWGSDLPHYVRTDEGKLRQVLMNLLSNAIKFTEQGHITFRIHQTTVVSKL 369 Query: 713 ARD-------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVES 763 + + F V+++G I +++F+ F+ A G GLGL+I Sbjct: 370 NEELHLPLTPHYWLNFEVRDSGPGISVSELENIFHPFIQGEQARSVVDEGTGLGLAISHQ 429 Query: 764 FINLHGGHVSISSS 777 F++L GG++S+SSS Sbjct: 430 FVSLMGGNLSVSSS 443 >gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 762 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 20/254 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAERA +E R+A K+ F+ +S+E+R+P+ I+G T + + K Sbjct: 350 RAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENA--HDEEKARAC 403 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I +S L+ L+NDILD++ +++G + + T + + T+ E IR Sbjct: 404 LEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRY 463 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNG 717 K G L S V D RL QI ++ NA F+ + +V L+ AA D+ Sbjct: 464 KTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDA 523 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 ++ FSV + G I + + +F+ F RR G GLGL+I + F + GG +S+S Sbjct: 524 IWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFTEMMGGRISLS 583 Query: 776 SSDEGVTTINCRIP 789 S +T +P Sbjct: 584 SEVGKGSTFTVDVP 597 >gi|221369237|ref|YP_002520333.1| Sensor protein [Rhodobacter sphaeroides KD131] gi|221162289|gb|ACM03260.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 699 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 123/238 (51%), Gaps = 3/238 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + L A+ K++F+ +S+ELR+PLT IIG+ +LL+TS+ L+ ++ Q V+ IS Sbjct: 452 LATMGDKLDAANRAKSNFLSSMSHELRTPLTAIIGYAELLETSEGRKLDGERLQQVQAIS 511 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + ++ LV+ +L+L+ ++ ++L S++ L L+ E + +++++ Sbjct: 512 TAGWNMVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALSRARPDAERMRVTLRILAP 571 Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 L S V+D L +I ++LSNA+ ++ V + + D + S+++ G IP Sbjct: 572 KAPLPSVVSDPALLRRILDQLLSNAVKYNLPDGLVEISFGLEAPDTVDLSIRDTGPGIPT 631 Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D +F F H G G G+GL+I + + G +S+ S+ T RIP Sbjct: 632 DRQAEIFQAFQRLGHENGAISGAGIGLTIAQRLAEVSGCRLSLESTPGEGTIFLLRIP 689 >gi|150249043|gb|ABR67685.1| ethylene receptor [Glycine max] Length = 722 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 38/269 (14%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ +I + LL+ + Sbjct: 296 ESMRARDQLIEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQET-- 353 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 L ++Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ L EV I Sbjct: 354 -DLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIK 412 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709 + + ++ V SD + + + D +RL+Q ++ NA+ FS +G I Sbjct: 413 PVASVKKLSLTSHVASDLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGCISITAFVAKPE 471 Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 L DN ++ VK++GS I P+D+ K +F +F N R G G Sbjct: 472 SFRDARIPDFLPVPSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQNQSLTTRNPAGSG 530 Query: 756 LGLSIVESFINLHGGHVSISSS--DEGVT 782 LGL+I F+NL GH+ + S D+G T Sbjct: 531 LGLAICRRFVNLMEGHIWVESEGIDKGCT 559 >gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1627 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 46/283 (16%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T + + L E A++ K+ F+ ++S+ELR+PL I+GFT L+ +L+ Sbjct: 1105 LTKTQQQAEELQLAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHNDP--ALSG 1162 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + QY+ IS + LLNL+NDIL+++ ++AG + LN + L+ LLN +++ + K Sbjct: 1163 EYQQYIHIISQAGEYLLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKL 1222 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG-------STVILKAARDN 716 ++++ D + F+A D ++L Q+ +L+NA+ F+ G S +LK + Sbjct: 1223 KGLQLQFDCDLNVPQFIATDDKKLRQVLINLLNNAIKFTESGYVTLRVFSQPLLKHGSFS 1282 Query: 717 GD----------------------------------FIFSVKNNGSSIPEDMCKSVFNRF 742 GD F V++ G I +F F Sbjct: 1283 GDNQSELVKQLTPILPASESLSEAPTNHPNHLELIPIYFEVEDTGLGIAPHELDRLFEAF 1342 Query: 743 V-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + A G GLGL I + F+ L GG + +SS GV +I Sbjct: 1343 SQTEAGFKSSEGTGLGLPISQRFVQLMGGEIKVSSQP-GVGSI 1384 >gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli 1827-70] gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli 1827-70] gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2747-71] Length = 595 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 81 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 137 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 138 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 197 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 198 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 256 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 257 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 316 Query: 783 TINCRIPS 790 T+ PS Sbjct: 317 TLTIHAPS 324 >gi|322436995|ref|YP_004219207.1| histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164722|gb|ADW70427.1| histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 613 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 17/248 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ A++ A E+K F+ V++ELR+PL +I+ + L+ + GSL+++Q + V +I Sbjct: 212 LEDRARAVQHASELKTRFLSGVTHELRTPLNSIVSLSRLMLSHSDGSLSTEQEKQVNFIL 271 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL---LNEVKQSIATKMHENNIRIKV 671 S+ + LVND+LDLA V+AG N + + DL L + + +AT N +K+ Sbjct: 272 RSAQNMTELVNDLLDLARVEAGKAISNLTYFTVADLYAGLRGMFRPLAT-----NPSVKL 326 Query: 672 ISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFI-FSVKNNG 727 + D + D +L QI +SNA+ F+ G+ + R+ D++ F+V + G Sbjct: 327 LFDIPSEPLRLHTDEGKLAQILRNFISNALKFTEHGTVTVSARPREGSPDWVTFTVVDTG 386 Query: 728 SSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 I + + V + V A G+++G GLGL + SF L GG + +S + Sbjct: 387 IGIAPEHHEIVMQEWGQVEHVQQAAHGKQKGSGLGLPLSRSFAELLGGRIHFTSEPGQGS 446 Query: 783 TINCRIPS 790 T +P+ Sbjct: 447 TFEVSLPA 454 >gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 652 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 9/285 (3%) Query: 510 ERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568 ERK + T ELLS + +L II + LT V + + ++AL E EA A+ Sbjct: 82 ERKVEERTTELLSANKLLTQEIIERKQIEIALT-QEVIERQKVQQALKEAKEAAEAANVA 140 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL IIG++++L + + I + LL L+ND+L Sbjct: 141 KSQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPDLHKIKTAGNHLLGLINDVL 200 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQR 686 DL+ ++AG M+L I LN L++EV + + + NN IK +LG D + Sbjct: 201 DLSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIK--RSQQLGEIQTDITK 258 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L Q+ ++SNA F+ KG T+ L + F V +NG + E+ +F F Sbjct: 259 LRQMLLNLISNAAKFTEKG-TISLNIQSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQAD 317 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + F + GG +S+++ +T + +P Sbjct: 318 ASTTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLP 362 >gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 482 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 9/215 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGS---LNSKQSQYVEYISASSTILLNLV 624 K++F+ +S+ELR+PL IIGF T +++ ++ ++ + Q + I S LL L+ Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDVKIDEQVLQDIAEIRRSGQHLLGLI 304 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDLA ++AG ++LN + + L LL+E ++ + + I+++ L + +AD Sbjct: 305 NDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQALIGDRPIQLRREYHDSLPTVLADE 364 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF- 742 R+ Q+ ++SNA F+ G + AR D + V++ G I + +F +F Sbjct: 365 VRIRQVLLNLVSNACKFTHMGEIAV--GARAETDQVVLWVRDTGIGIAPADQERIFQQFE 422 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V NA G GLGLSI I LHGG + + S Sbjct: 423 QVENADTRHHAGTGLGLSICRWLIELHGGRMWLES 457 >gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 562 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 7/241 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + + E ++ E+K+ F+ S+E R PLT + T+LL+ K+ ++ Sbjct: 261 EAEMLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELLEQYSHNWAEEKKLKHFN 320 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHENNIR 668 I S + L++D+L + ++G ++ N + LN L ++ + I K HE Sbjct: 321 RIKDSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELGIGKQHE---- 376 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I I+ G+ D + L I + +L+NA+ +S GSTV + IF +K+ G Sbjct: 377 ISWINSGRASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNCHCREQEVIFEIKDQGI 436 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + K +F F + G +G GLGLSIV+ ++LHGG +++ S TT + Sbjct: 437 GIPPEDQKRLFESFHRAKNVGNIQGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTL 496 Query: 789 P 789 P Sbjct: 497 P 497 >gi|21242622|ref|NP_642204.1| RpfC protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108086|gb|AAM36740.1| RpfC protein [Xanthomonas axonopodis pv. citri str. 306] Length = 725 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 21/250 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LT R+A E K+ F+ ++S+E R+PL + G T++L T++ ++S+Q + ++ Sbjct: 174 RQLTRATVEARRASEAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---MDSEQRECLKT 230 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSIATKMHENNI 667 I AS+ LL LV ++LD++ ++AG +++N S L+D L + QS A + N Sbjct: 231 IQASTRSLLALVEEVLDISAIEAGKLRINTSDFALHDTLQAIGLILEPQSRAKAL---NY 287 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FS 722 ++ V +D D L QI ++ NA+ F+ +GS + AA + F Sbjct: 288 QVSVAADVP-ARLHGDAGHLRQILLNLVGNAVKFTDQGSVQLKVAATGTNGRVGVLLRFE 346 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDE 779 V + G +P DM +F F A G R G GLG +I + + GG + + E Sbjct: 347 VIDTGIGVPVDMRPRLFEAF-EQADTGLARRFEGSGLGTTIAKGLVQSMGGAIGFEENPE 405 Query: 780 GVTTINCRIP 789 G + +P Sbjct: 406 GGSQFWFELP 415 >gi|116668684|ref|YP_829617.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp. FB24] gi|116608793|gb|ABK01517.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp. FB24] Length = 566 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ D+ K F+ V++ELR+PLT+I + D+++ G + + S+ ++ I +S L Sbjct: 328 LRQLDQAKTDFLATVNHELRTPLTSISAYLDMIQDGVGGPVPPEVSRMLDIIVRNSERLR 387 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L+ D+L ++ D L+ + L L V ++ ++ I + + DG + Sbjct: 388 RLIEDMLTVSRQDYDGANLHLGPVQLGHTLQIVTVALRPLAELGDVSISLELCDGD-PAI 446 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFI-FSVKNNGSSIPEDMC 735 +AD +L Q+F+ ++SNA+ F+ +G +++ +A D + V++ G IPE+ Sbjct: 447 IADEVQLEQVFTNLVSNAIKFTPRGGRIVVSCRFQAMTDGEPGVNVHVRDTGVGIPEEEI 506 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF SNA G GLGL+I + H G++++SS TTI ++P Sbjct: 507 PHLFTRFFRASNATSTAVPGSGLGLAIAHDIVKSHRGYLAVSSELGAGTTITVQLP 562 >gi|301053449|ref|YP_003791660.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375618|gb|ADK04522.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 355 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 133/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + QY Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 170 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 231 CMKGDKGL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQMSKRDMNVEIEIKNWGQC 289 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP++ VF +F +RG++ G G+GL+I +S LH G +++ S+D E V Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDKETVF 345 Query: 783 TI 784 TI Sbjct: 346 TI 347 >gi|229122768|ref|ZP_04251977.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201] gi|228660632|gb|EEL16263.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201] Length = 448 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I I+ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1210 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 32/281 (11%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ ++T +A+ +L + A++ K+ F+ ++S+ELR+PL I+GFT ++ S+ Sbjct: 689 VIALRDITKRKQADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVM--SR 746 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++ ++ + ++ I+ S LL+L+ND+LDL+ ++AG + + S L L+ +++ Sbjct: 747 DPAITPEEQENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMF 806 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKA- 712 K +++ + + ++ AD +L Q+ +LSNA+ F+ GS +LKA Sbjct: 807 QHKARAKGLQLHLNIAADVPHYIQADSNKLRQVLINLLSNAIKFTQNGSINLRVALLKAE 866 Query: 713 ARDNG----DFI-------------------FSVKNNGSSIPEDMCKSVFNRFV-SNAHR 748 D+G D I F V + G I S+F+ F+ ++A + Sbjct: 867 GNDHGSDAEDMITPPSSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTHAGK 926 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I F+ L GG + +SS +T + IP Sbjct: 927 VANEGTGLGLAISRKFVQLMGGDIQVSSQLNQGSTFSFEIP 967 >gi|188589804|ref|YP_001921022.1| sensory box histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188500085|gb|ACD53221.1| sensory box histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 371 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%) Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + +KNE L++ +E+++ F ++S+ELR+PL II LL+ N + ++++ Sbjct: 95 VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRM-----YNYNEEEFLK 149 Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Y IS + + +L L+N+I+D+ DAG K+N+ + L+ V SIA Sbjct: 150 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIVSLVENVTLSIAEYEKA 209 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722 I +D + D + + + +LSNA+ F+S + + +N D S Sbjct: 210 RKRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVNIESENNDKYLSIT 269 Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +K++G IP+D KS+F RFV + R G G+GLS+V+ +N H G + + +++ Sbjct: 270 IKDDGIGIPKDFRKSIFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHDGEIYLKDNEK 328 >gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36] gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36] Length = 903 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 14/235 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ + + E+ +A+ K+SF+ ++S+E+R+PL +IG +++L +K L Q ++ Sbjct: 365 EKQIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTK---LTPSQQDHLA 421 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS LL L+NDILD + +++G + + L +++ + I N+ V Sbjct: 422 IIENSSQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITPSAAAKNLDFSV 481 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVK 724 I+ F+ D RL Q+ +LSNA+ F+ G S+ +++ +R + FSV Sbjct: 482 NIAPELPNEFLLDEHRLRQVLMNLLSNAVKFTDSGQVSLTLSSKVIENSR--SELYFSVA 539 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + G+ I ED + +F F R+ G GLGL+I + L GG + + S+ Sbjct: 540 DTGTGIEEDKQQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEIGVDST 594 >gi|110805009|ref|YP_688528.1| sensor protein torS [Shigella flexneri 5 str. 8401] gi|110614557|gb|ABF03224.1| sensor protein torS [Shigella flexneri 5 str. 8401] Length = 816 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q ++ I+ S LL Sbjct: 349 LEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLQAITDSGESLL 405 Query: 622 NLVNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678 ++NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D Sbjct: 406 TILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPS 465 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I + Sbjct: 466 ALMGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEI 524 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 525 FQPFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 573 >gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031] gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031] Length = 999 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 26/255 (10%) Query: 545 VTDSVRAERALTEKN----EALRKADEI----------KNSFVQHVSYELRSPLTNIIGF 590 + D+ +A L E N E++R +E+ K+ F+ ++S+E+R+P+ +IG Sbjct: 306 IEDANQARNELIETNRKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIRTPMNGVIGM 365 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 DLL ++L ++ Q YVE I+ S LL ++NDILD + ++A +++L+ L DL Sbjct: 366 ADLLLETRL---STDQRNYVEIINGSGRNLLKIINDILDFSKIEARMLELDAIDFDLFDL 422 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L E+ + + + + + +I+ L S D R+ QI ++ NA+ F+ +G V+ Sbjct: 423 LEEICGVLGLEARDKGLELLLITGFDLPFSLKGDPARIRQILVNLIGNALRFTPEGGEVV 482 Query: 710 LKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 LK N F+V++ G I D + +F F R+ G GLGLSI Sbjct: 483 LKVMVQQQTDRNAVIRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFGGTGLGLSISN 542 Query: 763 SFI-NLHGGHVSISS 776 + + GG + + S Sbjct: 543 DLVLKMGGGGIHVES 557 >gi|295691356|ref|YP_003595049.1| histidine kinase [Caulobacter segnis ATCC 21756] gi|295433259|gb|ADG12431.1| histidine kinase [Caulobacter segnis ATCC 21756] Length = 516 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 5/188 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E R+PL ++G LL+ +KL ++Q YV + S LL+LVND+L A + A Sbjct: 21 LSHEFRTPLNGVLGMARLLENTKL---TAEQRSYVTALRESGDHLLSLVNDVLHFARLGA 77 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 ++L+ + + LL +V + ++ + HE + I L AD RL QI Sbjct: 78 ASIELSLGPVDVESLLRQVAELMSPRAHEKGVEIAWALTAPLPVIHADEGRLRQILLNFA 137 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753 NA+ F+ G ++ +A +NG FSV + G + + +F FV H Q G Sbjct: 138 GNAVKFTEAGGVLLSASAGENGRIRFSVADTGPGVAPEARARIFEAFVQTDITHSTQLGG 197 Query: 754 VGLGLSIV 761 GLGL+IV Sbjct: 198 AGLGLAIV 205 >gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 533 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K + + + + D D++RL+Q+ + ++NA+ F+++G ++ + ++ Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F+V + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGAE 514 Query: 776 S 776 S Sbjct: 515 S 515 >gi|256393336|ref|YP_003114900.1| histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359562|gb|ACU73059.1| histidine kinase [Catenulispora acidiphila DSM 44928] Length = 592 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 14/241 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE+ E + D + + V +++ELRSPLTNI G+ L+ ++ G L + + Sbjct: 361 LTERREQM---DAQRKAMVADIAHELRSPLTNIRGW---LEVTRDG-LVEPTPDLITSLH 413 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + +L +++D+ DLA+ DAG ++++ I DLL +V + + + I ++V ++ Sbjct: 414 DEAVVLQRVIDDLQDLASADAGTLRVHPQPIAALDLLQQVALAHRAQAADLGITVEVHAE 473 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 L + AD +R+ Q+ ++SNA+ S+ G+ V L AR D + S ++ G I + Sbjct: 474 PGLDVY-ADPERIRQVLGNLVSNAVRHSASGAHVTLT-ARPTADGVELSAQDTGCGIAQA 531 Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F+RF + + + RG GLGL+I + HGG +++ S TT+ R+P Sbjct: 532 DLPYIFDRFW-RSEKSRNRGTGGSGLGLAIARHLVLAHGGTITVESFVGVGTTMTVRLPP 590 Query: 791 K 791 Sbjct: 591 P 591 >gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1611 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E L + E A+ K+ F+ ++S+ELR+PL I+GFT LL + Sbjct: 1130 THKDITQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLL--GRDT 1187 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL++ + ++ I+ S LL L++DILDL+ ++ G + L + L+ LL V++ ++ Sbjct: 1188 SLSAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSP 1247 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K I++ + D L ++ D ++L QI +L+NA+ F+ +G TV L+ D Sbjct: 1248 KAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQG-TVTLRVNLSKIDQ 1306 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F V++ G I D ++F FV + A + +G GLGL+I + + L GG + Sbjct: 1307 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKINQGSGLGLAISQKLVQLMGGKIE 1366 Query: 774 ISS 776 ++S Sbjct: 1367 VNS 1369 >gi|323492426|ref|ZP_08097574.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546] gi|323313213|gb|EGA66329.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546] Length = 569 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 134/262 (51%), Gaps = 10/262 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592 +Q ML + ++ + +T EA +A+E + S FV +++ELR+PL ++G + Sbjct: 173 SQVMLVGELLCSAISRQMIVTRHQEARARAEESERSTKEFVAMINHELRTPLNGLLGSAE 232 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL + SLN +Q + ++ S +L +++NDILD + ++AG+M+L S +L N Sbjct: 233 LLADT---SLNEEQQTLLSNLAHSGDLLRHIINDILDFSKMNAGMMELIPSQFSWVELSN 289 Query: 653 EVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + K E I + +L +F+ D +R+ QI ++ NA+ F+++G V L Sbjct: 290 MIDGIFRPKAQEKGIEFTIEQTNQLPAAFIGDFERIGQIVVNLVGNAIKFTAQGE-VKLV 348 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769 A D S+ ++G I ++ +F F+ +R G GLGL+I ++ + L Sbjct: 349 AEWDVDCLKMSIIDSGVGISNELHDQLFTPFIQVDRSAKRNFEGTGLGLAICKNLVELML 408 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G +S++S + N IP K Sbjct: 409 GEISLTSELGKGSCFNVTIPLK 430 >gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968] gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150] gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968] gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150] Length = 806 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVE 611 + L E N L D++K F ++S+ELR+PL I+G D LL+ L SL +K+ + Sbjct: 177 KQLQEVNSHLALLDQMKTQFFANISHELRTPLMLILGPIDSLLQDKPLSSLQTKK---LR 233 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ +L VND+LD+A DA +++NY I L+ +V + ++ Sbjct: 234 LIKENALLLSKHVNDLLDIAKFDAAKLEINYYDIDFVQLIKKVLSLFEADIEAKEFQVSC 293 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 L + D +++ ++ +LSN++ F+ + LK + FS+++NG IP Sbjct: 294 DFPKTLLIQI-DSEKIERVVLNLLSNSIKFNPIHGIINLKLHKKKNYAEFSIEDNGPGIP 352 Query: 732 EDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +++F RF G GLGL+IV+ F+ LH G +++ S+ G +IP Sbjct: 353 SKFKEAIFERFFQMEESLYHSAGTGLGLAIVKDFVELHKGTINVQKSELGGARFVIQIPL 412 Query: 791 K 791 K Sbjct: 413 K 413 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 10/218 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ A++ FV S++L+SPL I ++ L + +Y+ ++ + + Sbjct: 574 VKNAEDELERFVYLASHDLKSPLPAIEHLVSWIEEDTENQLTPQSRKYLSFLRKRAYRMS 633 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 NL++ +L A AG++ TI ++L+N V + + N+ I D S Sbjct: 634 NLLDGLLKYA--QAGVIHSKVETINFSELVNNVVHKVDSA---NDFDIHC--DRCNFSIK 686 Query: 682 ADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 A+R L ++ +++ N++ KG + + + F V ++G I +F Sbjct: 687 AERTPLQEVLYELIDNSVKHHHLHKGH-IKVGVIEKKACYEFFVADDGPGIESAYQDRIF 745 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + R G+GLSI + + HG ++ + S+ Sbjct: 746 QLFQTLQPRDIFESCGVGLSIAKKIVETHGSNIWVESA 783 >gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC 43243] gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC 43243] Length = 473 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 7/237 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608 R +L + + + D+ + F+ ++S++ RSPLT+I G+ + + G++ + Q Sbjct: 226 RLGASLNYMSSEINEMDKFQQKFISNISHDFRSPLTSIKGYLEAMSD---GTIPPELHQK 282 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+ + + L L N++L L +D ++LNYS +ND++ ++ E I Sbjct: 283 YIGIVLFETERLTKLTNNLLTLNDLDPKSVRLNYSDFDINDVIRHTIETFEGVCTEKKIT 342 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 K+ + AD +++ Q+ ++ NA+ FS S + + NG SVK+NG Sbjct: 343 FKLTFSSRQLMVHADMEKIQQVVYNLVDNAVKFSHPDSFIAISTTTKNGRAFISVKDNGI 402 Query: 729 SIPEDMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 IP+D K ++ RF ++ RG+ ++G GLGL+IV I HG + + S+ EGV T Sbjct: 403 GIPKDDLKKIWERFYKTDNSRGRDKKGSGLGLAIVREIIQTHGERIDVIST-EGVGT 458 >gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1068 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 127/255 (49%), Gaps = 18/255 (7%) Query: 536 AQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +T+ T + ++T+ +AE AL + EA A+ K+ F+ +S+ELR+PL I+GFT + Sbjct: 570 GKTIFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQV 629 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L + L + ++ IS S LL+L+NDIL+++ ++AG N + L LL+ Sbjct: 630 LGRNSY--LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDS 687 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 ++ + + +++ + F+ D +L Q+ +L NA+ F+ +G + Sbjct: 688 LENMLRLRAEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGNAIKFTEQGGVTL--R 745 Query: 713 ARDNG----------DFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIV 761 + G IF +++ G I + +F F + + R +G GLGL I Sbjct: 746 VKTGGMMPSSLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESGRNSHQGTGLGLPIS 805 Query: 762 ESFINLHGGHVSISS 776 + F+ L GG + ++S Sbjct: 806 QKFVELMGGKIGVNS 820 >gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1252 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + +K E L + + K+ F+ ++S+ELR+PL +++ + L +K +L+ Q + Sbjct: 573 AKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESA 632 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL L+N++LDL+ +++G M +N +VL + ++ + + + + Sbjct: 633 NIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLD 692 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGS 728 +I L + D QRL QI ++SNA+ F+ +G + L+ R N D +FSV ++G Sbjct: 693 LIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERGR-IQLEVKRQNSDKILFSVIDSGI 751 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPE+ ++F F V + + G GLGLSI L GG + + S +T + Sbjct: 752 GIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSL 811 Query: 787 RIP 789 +P Sbjct: 812 LLP 814 >gi|290511586|ref|ZP_06550955.1| two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [Klebsiella sp. 1_1_55] gi|289776579|gb|EFD84578.1| two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [Klebsiella sp. 1_1_55] Length = 784 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 269 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 325 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 326 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 385 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 386 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 436 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 437 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 496 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 497 SQPGKGATFTLTVHAPA 513 >gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1231 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + +K E L + + K+ F+ ++S+ELR+PL +++ + L +K +L+ Q + Sbjct: 552 AKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESA 611 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL L+N++LDL+ +++G M +N +VL + ++ + + + + Sbjct: 612 NIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLD 671 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGS 728 +I L + D QRL QI ++SNA+ F+ +G + L+ R N D +FSV ++G Sbjct: 672 LIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERGR-IQLEVKRQNSDKILFSVIDSGI 730 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPE+ ++F F V + + G GLGLSI L GG + + S +T + Sbjct: 731 GIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSL 790 Query: 787 RIP 789 +P Sbjct: 791 LLP 793 >gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 637 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 136/276 (49%), Gaps = 20/276 (7%) Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563 I F+ R+ G L +S L YS P+ +AQ + V+ R +TE+ E Sbjct: 366 IEHFETVRRRKDGQLIHMS---LSYS--PIRDAQGRVVAVSTIG-----RDITERKEM-- 413 Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++K+ + VS+E+R+PLT ++G+T+ + +++ + +Q +Y+ S L L Sbjct: 414 --EQMKDEMISAVSHEMRTPLTAMLGYTEFMLDNEVPA--DQQREYLRITLHESEKLNEL 469 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + + LDL + + + + + L LL E ++I + SD L D Sbjct: 470 IGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSD--LPRICGD 527 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 ++L Q+F+ ++SNA+ +S KG V + A R+ + +V++ G I + +F RF Sbjct: 528 NKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKDCVVITVRDEGIGISPQAVERIFERFY 587 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V+N G GLGL++V + HGG V + S+ Sbjct: 588 RVNNTACRVFGGTGLGLALVREIVTAHGGEVWVEST 623 >gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 716 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 122/239 (51%), Gaps = 7/239 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++ R +++L+E + A+ K+ F+ ++S+ELR+PL ++G+T L+K + L Sbjct: 238 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 295 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +K +Y++ I+ S LL+L+ND+LD++ +DAG + ++ E+ + K Sbjct: 296 TAKHHEYLDIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 355 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718 + + + + + FV D + Q+ +L NA+ F+ +G+ I A NG Sbjct: 356 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 415 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G I E+ + VF F + G GLGLSI + F+ L GG + + S Sbjct: 416 KVTFEVSDTGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 474 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E LT A + K+ F+ ++S+E+R+PL+ IIG T + T + + + Sbjct: 409 RREEDLTTARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ---NPRPEIREN 465 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I SS LL +VNDILD + ++AG M+ L D L+ +S + + + Sbjct: 466 LELILDSSRSLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTL 525 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVK 724 V D ++ + V D R++Q+ ++ NA+ F+ +G V L AR GD + SV+ Sbjct: 526 GVRIDPQVPAMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLAR-PGDPMLVSCSVR 584 Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 + G IPED +F F + R +R G GLGL+I + + GG + + S Sbjct: 585 DTGIGIPEDRLHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVES 638 >gi|229092208|ref|ZP_04223389.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42] gi|228691199|gb|EEL44963.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42] Length = 448 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIN 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ + +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas sp. SN2] Length = 887 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE +A K+ F+ ++S+E+R+P+ IIG +L + + + S Y++ + Sbjct: 378 LTESKIKAERATASKSIFLANMSHEIRTPMNGIIGLIELAQQHPVPDI---VSGYLDKAA 434 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VIS 673 SS IL++++NDILD + ++AG +K+ + L+ L + + IA K E N+ ++ ++S Sbjct: 435 YSSQILMSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALKAKEKNLVVRFIVS 494 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI---FSVKNNGS 728 + D R+ QI I SNA+ F+ +G I + D G+ + +++++G Sbjct: 495 PSIPPQVIGDPLRIAQIIMNIGSNAVKFTEQGQICIRFDGSINDKGNLLSLTMNIEDSGI 554 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + E +FN F R+ G GLGL+IV+ +L GG +S +S + +T Sbjct: 555 GMSERQLARIFNPFTQADDATNRKYGGTGLGLTIVKQLTDLMGGSLSATSVEGKGSTFTI 614 Query: 787 RIP 789 +P Sbjct: 615 SLP 617 >gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 510 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 10/220 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA K+ F+ +S+E+R+P+ +IGFT LL S +Q +Y++ + S+ LL L Sbjct: 130 KAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQL---SPRPEQMEYLKLLKFSAENLLVL 186 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +NDILD + ++AG ++ + + DL++ ++ ++ K +E NI++K++ D L V Sbjct: 187 INDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQKANEKNIQLKLLMDHDLPDVVKG 246 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D R+ QI + ++SNA+ F+ +G I+ + D F V + G I + + Sbjct: 247 DPVRIGQILTNLISNAVKFTKEGKVTIVASLHKKYDDYTIVDFEVIDTGIGIAANKLDDI 306 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+ F A R+ G GLGL+I + + L + + S Sbjct: 307 FDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKVKS 346 >gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 762 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 20/254 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAERA +E R+A K+ F+ +S+E+R+P+ I+G T + + K Sbjct: 350 RAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENA--HDEEKARAC 403 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I +S L+ L+NDILD++ +++G + + T + + T+ E IR Sbjct: 404 LEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRY 463 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNG 717 K G L S V D RL QI ++ NA F+ + +V L+ AA D+ Sbjct: 464 KTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDA 523 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 ++ FSV + G I + + +F+ F RR G GLGL+I + F + GG +S+S Sbjct: 524 IWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFAEMMGGRISLS 583 Query: 776 SSDEGVTTINCRIP 789 S +T +P Sbjct: 584 SEVGKGSTFTVDVP 597 >gi|229138611|ref|ZP_04267195.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26] gi|228644890|gb|EEL01138.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26] Length = 276 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 30 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 88 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + N+ Sbjct: 89 VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 148 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 149 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 207 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S +LH G +++ S+D+ T Sbjct: 208 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 263 Query: 785 NCRIP 789 ++P Sbjct: 264 TVKLP 268 >gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] Length = 948 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T +L Sbjct: 442 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + V ++ SS++LL +++DILD + +++ +K+ +++N + + Sbjct: 502 ---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMP 558 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + + + D RL Q+ S +LSNA+ F+ G V+ GD+ Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDTGCIVLHVCLV--GDY 616 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 + V++ G IP +F+ F QR +G GLGL+I E I++ G +S+ + Sbjct: 617 LTIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDT 676 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 677 EPGMGSQFTIRIP 689 >gi|206577626|ref|YP_002236379.1| aerobic respiration control sensor protein ArcB [Klebsiella pneumoniae 342] gi|206566684|gb|ACI08460.1| aerobic respiration control sensor protein ArcB [Klebsiella pneumoniae 342] Length = 779 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 492 SQPGKGATFTLTVHAPA 508 >gi|149376819|ref|ZP_01894576.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358940|gb|EDM47407.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 783 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 14/235 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+++A+R A+ KN F+ +VS+ELR PL +++G+ +LL + L + Q +YV + + Sbjct: 246 ERDQAVR-ANHAKNQFLANVSHELRIPLQSVLGYANLLSDTPL---DQDQREYVHTLLNA 301 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S L ++ND+LD+++++AG + L+ L D LN++ + + E + +++ D Sbjct: 302 SEGLSAIINDLLDISSMEAGKLVLDDIPFDLRDTLNDLVHMLGARAREKGLALELRIDEN 361 Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSI- 730 L + D RL QI + SNA+ F+ G +I + RDN +V++ G I Sbjct: 362 LPWALKGDPVRLRQILLNMTSNAIKFTDSGHVLISIEVLGRRDNNVRLRMAVEDTGVGIN 421 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 PED+ V+ +V R QR+ G GLGL+I + L G + + S EG T Sbjct: 422 PEDI-PLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVQLMDGSLDLESKPGEGST 475 >gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata] gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum gloeosporioides] Length = 745 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 15/223 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ LL Sbjct: 104 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLL 160 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y L+ +V + ++T + + I + + ++V Sbjct: 161 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 220 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFI--FSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+++G K+A N + + F+V + G Sbjct: 221 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAVIDTGRGFT 280 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ +F F + + Q G GLGL I + LHGG + Sbjct: 281 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKM 323 >gi|315127664|ref|YP_004069667.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] gi|315016178|gb|ADT69516.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] Length = 1256 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 134/263 (50%), Gaps = 16/263 (6%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 L S+I N+Q + +++ D LT+ + +A K+ F+ ++S+E+R+PL Sbjct: 621 LSMSLIWNENSQPLYYVIHIQDVTE----LTKAKDDAERATLAKSRFIANLSHEIRTPLN 676 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++G D+L L +Q+ +Y ++ LL ++N +LD A V++ L + + Sbjct: 677 AVLGLLDMLAEHGLTQRQIQQTSQAKY---AANNLLQMLNSMLDFARVESKEATLQLAPL 733 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704 L DL++ + I I++K+ D ++ F V D RL Q+ +L+NA+ F++K Sbjct: 734 CLVDLIDTCESLILPLCQAKQIQLKIDIDSQISPFLVGDTIRLQQVLGNLLTNAVKFTNK 793 Query: 705 GSTVILKAARDNGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757 GS + + + I F V + G I + + +F+ F R +GVGLG Sbjct: 794 GSVTLKMTLQPSQSHIEQRICFQVIDTGVGIAQADQRRLFDAFTQGDESSTRLHQGVGLG 853 Query: 758 LSIVESFINLHGGHVSISSSDEG 780 L+IV+ + L GG +++ SSD+G Sbjct: 854 LAIVKHSVALMGGEIAL-SSDKG 875 >gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] Length = 874 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 131/237 (55%), Gaps = 16/237 (6%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610 +R L + A + A+E K+ F+ ++S+++R+PL +IIG TD+LK+ ++KQ + + Sbjct: 567 KRNLQDALSAAKLANEAKSRFLSNMSHDIRTPLNSIIGMTDILKSH---PDDTKQVEEGL 623 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669 + IS S LL L+NDILD++ +++G M L S + +++E+ + + + + I I Sbjct: 624 DKISMSGRHLLELINDILDMSRIESGKMSLQESGFNIRAMMSELIELVRPQALGSGITFI 683 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 I + + + D R+ QI+ ILSNA+ ++ G ++ + R++GD +IF Sbjct: 684 SDIVSIEHDNVIGDELRIKQIYLNILSNAVKYTWAGGSITI-TLREDGDVKNGRRHSYIF 742 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +NG + + K +F+ F + G G GLG++I + +NL GG + + S Sbjct: 743 ICSDNGIGMSREFQKHIFDSFERAEDNAIGNVTGTGLGMAIARNLVNLMGGTIDVDS 799 >gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 786 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 141/273 (51%), Gaps = 15/273 (5%) Query: 529 SIIPLPNAQTMLT----FVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSP 583 +++P+ +A T F +T ++RA R ++ EALR AD K+ F+ + +ELR+P Sbjct: 375 TMVPVKSADEFGTLSTNFNEMTTAIRARRMERDRAEEALRHADRRKDEFLAMLGHELRNP 434 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L+ I L + G +S I + L LV+D+LD+A + G ++L Sbjct: 435 LSAIANAVRLWNVA--GDDHSAVELAHGVIERQTDNLSRLVDDLLDVARITEGKIELRKR 492 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702 + +N+ ++ V +++ + + ++++ + +V AD R+ QI S +L+NA+ ++ Sbjct: 493 PVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKYT 552 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 KG + ++A R+ + + SV + G I M +F+ F H R G+G+GLS+ Sbjct: 553 RKGGEIRIEARREGHEAVISVNDTGIGIAPRMLPQIFDLFTQGDHSLDRPTGGLGIGLSL 612 Query: 761 VESFINLHGGHVSISSSDEGV---TTINCRIPS 790 + LHGG +I++ EGV +T +P+ Sbjct: 613 CRRLVELHGG--TITAFSEGVGRGSTFTVHLPT 643 >gi|254420242|ref|ZP_05033966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196186419|gb|EDX81395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 549 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 3/223 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ ++S+ELR+PL +IGF D+++ G L + + Y + I + LL+L+ND+L Sbjct: 307 KTRFLANMSHELRTPLNAVIGFADIMRQRLFGPLPDRYAGYADSIHQAGGHLLDLINDVL 366 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ ++A +L ++ D ++ + + + + + + + AD + L Sbjct: 367 DLSKIEAERYELALESLDARDPVSAAVALVRVQADDKGVDLAPVLPSIPLTVQADARALK 426 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAH 747 Q+ +LSNA+ F+ G +V L V + G I PED+ + V F Sbjct: 427 QMALNLLSNAVKFTPTGGSVTLTLDGVGPYLELVVSDTGVGIAPEDL-RRVGRPFEQAGG 485 Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 Q+ +G GLGLS+V S LHGG +SI S+ T + R+P Sbjct: 486 ADQKAQGTGLGLSLVRSLTELHGGRMSIDSTLGEGTAVMVRLP 528 >gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 854 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVE 611 R + +NEALR+A+ +K++F+ VS++LRSPLT I DLL+ S ++ + Sbjct: 598 RQVASENEALRQANHLKSTFLAGVSHDLRSPLTAIRASVEDLLERQHHVSPGEHRA-LLS 656 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669 I+ + L V+ +LDL+ ++AG + L+ + N L+ Q + T H+ R+ Sbjct: 657 NIARETARLSRFVDQLLDLSRIEAGTLPLDREWVEFNALV----QDVVTSFHQQYPTCRV 712 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +V L D + Q+ +L NA + + L+A + D + SV + G Sbjct: 713 EVCVSPTLPLLYIDPSLITQVLWNLLENAQKYGPSEGPITLEAFCTHTDLVLSVGDRGPG 772 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP +F+RF + R R G GLGL+I + H G + + G + Sbjct: 773 IPASERHRIFDRFYRLERDRRSHRSGSGLGLAICHGIVTAHQGSIWVDERPGGGSVFRIT 832 Query: 788 IP 789 +P Sbjct: 833 LP 834 >gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] Length = 2403 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 135/254 (53%), Gaps = 21/254 (8%) Query: 550 RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A+ A E N ++ A K+ F+ +VS++LR+P+ +IG ++LLK +KL + +Q Sbjct: 1864 KAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTKL---DKEQ 1920 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YVE I + LL L+NDILD + ++AG MK++ + L + ++EV +++ + Sbjct: 1921 DNYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRG 1980 Query: 667 IRIKVISDGKLGS----FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718 ++ I D + + D RL QIF +LSN+ F+ KG + ++++ + Sbjct: 1981 --LETIEDLDMVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGHVKVTAMVVREGKGRVR 2038 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774 SV + G IPE+ +F F S A R G GLGLSI ++ I ++ GG + + Sbjct: 2039 LECSVSDTGIGIPEEHKSRLFRPF-SQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWL 2097 Query: 775 SSSDEGVTTINCRI 788 S+ TT+ ++ Sbjct: 2098 DSTPGVGTTVTFQL 2111 >gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 2040 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 22/267 (8%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588 AQ ++ N E+ + ++ + LR A++ K+ F+ +S+ELR+PL I+ Sbjct: 1536 AQAAISIDNAQLYASVEKKVAQRTQQLRTAQLEAEHANQAKSDFLASMSHELRTPLNAIL 1595 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+ L+ ++ L + + I+ S LL+L+ND+L L+ ++AG L T Sbjct: 1596 GFSQLM--AQDARLPQHLGESLAIINRSGEHLLDLINDVLALSKIEAGKTTLQLDTFNFY 1653 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS- 706 + L + + + N+ + + AD ++L QI +L NA+ F+ +G Sbjct: 1654 EFLQAIHGMLQLRAKSKNLDFHFEQSPDIPEVIQADERKLRQILINLLGNAIKFTEQGRV 1713 Query: 707 TVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGL 756 T+ + A + + F V++ G+ I +D SVF FV + + R+G GL Sbjct: 1714 TLRVTNAHSQSEGLTPPDISVLQFEVEDTGAGIAKDELDSVFEAFVQTQSGIKSRQGTGL 1773 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783 GL I +SF+ L GG + + S+EG+ T Sbjct: 1774 GLPISQSFVQLMGGQLQV-RSEEGIGT 1799 >gi|110798905|ref|YP_695966.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|110673552|gb|ABG82539.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] Length = 787 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 400 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 458 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 459 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 504 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 505 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 564 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 565 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 624 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I ++ + D ++ +I +LSNA+ F+ G + + D Sbjct: 625 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 684 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 685 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 744 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 745 GSEFSILLPN 754 >gi|238027848|ref|YP_002912079.1| Histidine kinase [Burkholderia glumae BGR1] gi|237877042|gb|ACR29375.1| Histidine kinase [Burkholderia glumae BGR1] Length = 500 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 4/232 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E LR+ D +K F+ +S+ELR+PL++I ++LL G L +Q + V I Sbjct: 229 LDERAEELRRVDSLKTRFLSDMSHELRTPLSSIRALSNLLLNRLDGELTGEQERQVLLIR 288 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L ++VND+LDLA ++AG + + L+ V+ ++A + +++ Sbjct: 289 KSAEDLTDIVNDLLDLAKIEAGRTDVLPVLFEPHTLVAAVRATLAPLLSSPAVQLIFDDM 348 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPED 733 L + + D ++ QI +SNA+ F+ +G V + D+ F V + G I ++ Sbjct: 349 RGLPAMLTDEAKVTQILRNFVSNALKFTERGEIRVSARLQPDDEHITFFVTDTGIGIAQE 408 Query: 734 MCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 + +F F +H QR +G GLGL + + L GGHV + S EG T Sbjct: 409 DQELIFEAFGQVRSHLQQRVKGTGLGLPLCRNLAALLGGHVGVESRLGEGST 460 >gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 1287 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 29/282 (10%) Query: 535 NAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 N + M+ V+ ++ ER+ L ++ E LR+A+ +K+ F+ +S+ELRSPL I+G Sbjct: 853 NQRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREANRMKDEFLAILSHELRSPLNAILG 912 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 + LL++ KL + ++ +E I ++ + LV D+LD++ + G + L+ T L Sbjct: 913 WAQLLRSRKLSDIQIAKA--METIERNARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVP 970 Query: 650 LLNEVKQSI--ATKMHENNIRIKVISDGKLGS------FVADRQRLLQIFSKILSNAMDF 701 L+ +++ A + E ++RI +I ++ D +RL QI +LSNA+ F Sbjct: 971 LIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKF 1030 Query: 702 SSKGSTVIL----------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 + G + + K AR + V + G I + VF+RF Sbjct: 1031 TPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDTGIGIKPEFLPYVFDRFRQADSSST 1090 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+IV + LHGG +S+ S E T ++P Sbjct: 1091 RSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGATFTVKLP 1132 >gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii CDC 3083-94] gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii CDC 3083-94] Length = 778 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 761 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ IK+ F+ VS+ELR+PL +++G+ +++ KL + S+ +E I ++ + Sbjct: 383 QEANRIKDEFLAIVSHELRTPLNSMLGWVQIIRHRKLD--EAITSKALETIERNAKLQSK 440 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L++DILD++ + G ++LN + L ++N ++I +I+++ D +G + Sbjct: 441 LIDDILDISRIVQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVGEIMG 500 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +RL Q+ +LSNA+ F+ G V + + N + SV + G I + +F RF Sbjct: 501 DAERLQQVVWNLLSNAVKFTPSGGRVEVCLKQVNSNAQISVSDTGKGISGEFLPYIFERF 560 Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+IV + +H G V S EG+ T +P Sbjct: 561 RQADSTTTRVDGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLP 610 >gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 668 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 5/251 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ RAE + E KA++ K++F+ +S+ELR+PL I+G+T L + G+L Sbjct: 271 MDITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPLNAILGYTQLFEYD--GNL 328 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q + I + LL L+ND+LDLA +++G M ++ ++++ ++ E + + Sbjct: 329 SREQVTNIREIRKAGEHLLQLINDVLDLAKIESGKMMVSLEPVLVSRVIKECFTFVQPQA 388 Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 IR+ ++D + VAD R Q +LSNA+ ++ G V ++ D + Sbjct: 389 DALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYNIVGGEVEVRLDVQPMDQLR 448 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V++ G IP D VF F +A G G+GL I + + + G++ SS++ Sbjct: 449 ITVRDTGRGIPADRQHEVFQPFNRLSAENSNIEGSGVGLVITKQLVEMMHGNLDFSSAEA 508 Query: 780 GVTTINCRIPS 790 T+ +P+ Sbjct: 509 IGTSFWIDLPT 519 >gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str. 'morsitans'] gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] Length = 925 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT L+ Q Y++ I S LL Sbjct: 288 QEAVRIKSKFLANMSHELRTPLNGVIGFTRQTLKTP----LSPTQRDYLQTIERSGNHLL 343 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++ND+LD + ++AG + L L +L+EV +A HE + + + ++ +V Sbjct: 344 SIINDVLDFSKLEAGKLMLETIPFALRAILDEVVILLAHTAHEKGLELILQVQREVPEYV 403 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCK 736 D RL Q+ + ++ NA+ F+ +G +I + R+ + +++ G IPE Sbjct: 404 IGDPLRLQQVMTNLIGNAIKFTEQGHIIIRVSCQGHERERVEINVQIRDTGIGIPERQQS 463 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F RR G GLGL I + ++ GG ++ S +T IP Sbjct: 464 QLFQAFRQADASIARRHGGTGLGLVITQKLVHEMGGEITFRSRTGRGSTFWFHIP 518 >gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus YJ016] gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 780 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L +Q +Y Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + +L + D RL Q+ ++SNAM F+ +G V+ ++ DF I V++ Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ IN+ G +++ SS+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499 Query: 783 ---TINCRIP 789 TI+ +P Sbjct: 500 STFTISIHVP 509 >gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A +++ EK L + K+ F+ ++S+ELR+PL +++ LL + G+L+ KQ +Y Sbjct: 685 QARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNAEGNLSEKQVEY 744 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ LL L+NDILDLA +++G M + + DL +++++ ++ + Sbjct: 745 GRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERIFRQVANDRGLEF 804 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA------------RD 715 V L + + D +RL Q+ +LSNA F++ GS T+ ++ A R Sbjct: 805 AVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTALGSVTLRVEMATGGWDPASESLNRA 864 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 +G FSV + G I D + +F F R+ G GLGLSI L GG + Sbjct: 865 SGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSISREIARLLGGEIQ 924 Query: 774 ISSSDEGVTTINCRIP 789 + S +T +P Sbjct: 925 LESEPGRGSTFTLFLP 940 >gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 713 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 16/263 (6%) Query: 531 IPLPNAQTMLT--FVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSY 578 +PL + Q ++ F TD ++ L E+ L A+ IK+ F+ +S+ Sbjct: 290 LPLKDEQGIVVKWFGTCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSH 349 Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 ELR+PL I+G++ LL++ +L K SQ + I ++ + + L+ D+LD++ + G + Sbjct: 350 ELRTPLNAILGWSKLLQSRRLD--QEKTSQALATIEKNANLQVQLIEDLLDISRILQGKL 407 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 L+ + I L + +++ I + + + +G + D RL Q+ +LSNA Sbjct: 408 TLDITKINLKSTILSALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNA 467 Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 + F+ KG + ++ + +G V + G I + VF+ F R G+GL Sbjct: 468 LKFTPKGGKIEVRLEQADGYAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGL 527 Query: 757 GLSIVESFINLHGGHVSISSSDE 779 GL+IV + + +HGG V S E Sbjct: 528 GLAIVRNIVEIHGGIVKAKSEGE 550 >gi|330985224|gb|EGH83327.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 998 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757 Query: 789 PSKE 792 P E Sbjct: 758 PMHE 761 >gi|227518154|ref|ZP_03948203.1| sensor histidine kinase [Enterococcus faecalis TX0104] gi|227074397|gb|EEI12360.1| sensor histidine kinase [Enterococcus faecalis TX0104] Length = 393 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMVQLIEQLAADFELEAKKINMQIQVKANPASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] Length = 1771 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +L+ N+T + L + ++ A + K+ F+ ++S+E+R+P+ IIG + L + Sbjct: 1017 AVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQT 1076 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YV+ I +S LL ++NDILD + ++AG + + + L +L ++ Sbjct: 1077 EL---DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDM 1133 Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 + K + + + ++ D RL Q+ +++NA+ F+ +G ++ L+ Sbjct: 1134 FSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQGEVLLSISQLER 1193 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D FSV++NG + ED +F F R+ G GLGL+I + + L GG Sbjct: 1194 VDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGG 1253 Query: 771 HVSISS 776 + + S Sbjct: 1254 EIGVES 1259 >gi|196031953|ref|ZP_03099367.1| sensor histidine kinase [Bacillus cereus W] gi|195994704|gb|EDX58658.1| sensor histidine kinase [Bacillus cereus W] Length = 458 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I I+ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 639 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 137/256 (53%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 M T +N++D AE NE L++ D +K+ + VS+ELR+PLT+I G+ +L+ Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G++N Q + ++ + L L+ +LDL+ ++ G +++ + L ++ +V Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVI 499 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + E NI++ + + + AD+ R+ Q+ + ++ NA+ FS ++++ + Sbjct: 500 EYLKPLATEKNIKLN--REVEEITIEADKDRITQVLTNLIENAIKFSPANESIMISGVLE 557 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + V ++G+ IP+ + VFNRF V ++ + ++ G GLGL++ +S + H G + Sbjct: 558 DEHVHLKVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIW 617 Query: 774 ISSSDEGVTTINCRIP 789 + S +T + +P Sbjct: 618 VESELGKGSTFHILLP 633 >gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] Length = 534 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 4/216 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L+ D +K F +S+ELR+PLT I G+ +LLK LG +N +Q + I AS Sbjct: 299 ERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRIDASVDR 358 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +V + DL+ V + + LN+L+ EV + I ++I + L Sbjct: 359 LTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDVPLTLPM 418 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738 ADR R+ Q+ +L+NA+ ++ G + + + RD D + +V++ G IP++ +++ Sbjct: 419 ISADRSRIQQVLLNVLNNAIKYTPDGGQISI-SVRDECDHLLIAVRDTGIGIPKEDIENI 477 Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772 F+ F + ++ + +G GLGL+I + HGG + Sbjct: 478 FSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKI 513 >gi|21666555|gb|AAM73756.1|AF396830_1 ethylene receptor [Prunus persica] Length = 738 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 137/265 (51%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709 + + ++ + + +D + + V D +RL+QI ++ NA+ FS +GS I Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490 Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 A DN ++ VK++ S I P+D+ K +F +F R G G Sbjct: 491 SLRDFRAPEFFPAQSDNHFYLRVQVKDSRSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574 >gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 637 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 135/263 (51%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L E + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++EV + KM + +++ VI + + DR R+ Q+ LSNA+ + +GS + Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S +T +P+++ Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500 >gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1] gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1] Length = 1988 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 28/254 (11%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S LN++Q ++V I AS+ Sbjct: 1261 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNAEQLEHVNIIKASTDS 1317 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-----SIATKMHENNIRIKVISD 674 LLNL+NDILDL+ V+AG++KL+ + L LL EV +I + N + + + Sbjct: 1318 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYL----VEE 1373 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVK 724 G D+ R+ Q+ ++ NA+ F+ +G I + ++N + F V Sbjct: 1374 GVPAEVKGDKFRIRQVLLNVVGNAIKFTERGEIFIRCKVQPPDRSRPLKENETMVRFEVI 1433 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV 781 + G + K +F RF + + Q G GLGL+I F+ LHGG + S+ +G Sbjct: 1434 DTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGS 1493 Query: 782 T---TINCRIPSKE 792 T TI +P+ E Sbjct: 1494 TFFFTIKFGLPTAE 1507 >gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Virginia] Length = 442 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 18/342 (5%) Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519 SL + + L+ G +R + A T + DG +F +I ++ ++L+G Sbjct: 96 SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 155 Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQ 574 +L V+ + L ++ F ++ A L E+ E + K+ F+ Sbjct: 156 ML---VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSKSQFLA 212 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633 +VS+ELR+PL +IIGF++++++ LG + S++ +Y+ I S LL+L+NDILD + Sbjct: 213 NVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDILDFSKA 272 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 +A + + + L +++ + + + + +K + +AD +R+ Q+ Sbjct: 273 EANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMKQVIIN 332 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSNAHRGQ 750 +LSN++ F+ +G V L A I + + G I +D+ K SVF + + H + Sbjct: 333 VLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADSTHSRK 391 Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGL + + + L G SI S T + P K+ Sbjct: 392 YEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 433 >gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae 1012] gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae 1012] gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii ATCC 9905] gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii 5216-82] gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 155-74] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus CMCP6] gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus CMCP6] Length = 780 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L +Q +Y Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + +L + D RL Q+ ++SNAM F+ +G V+ ++ DF I V++ Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ IN+ G +++ SS+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499 Query: 783 ---TINCRIP 789 TI+ +P Sbjct: 500 STFTISIHVP 509 >gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 739 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 11/244 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +N+T +VR E L E A+ K++F+ ++S+E+R+P+ ++G +LL + +L Sbjct: 190 LNITSTVRYEAELRAAREKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDT---AL 246 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q Y I S LL ++ND+LD + ++A M L+ L ++EV + + Sbjct: 247 DEEQQLYASTIKNSGEALLVIINDVLDYSKIEAEKMMLHPEPFDLERCIHEVAMLMQPIV 306 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716 + + + V D L + FV D R+ Q+ + +L NA+ F++KG T + A Sbjct: 307 RDKGLTLLVDYDLFLPTLFVGDPGRVRQVLTNLLGNAVKFTTKGHILIRVTGVPDPATGR 366 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++++ G IP + +F F V N Q G GLGL+I + I + GG V + Sbjct: 367 CAIHVAIEDTGIGIPREKLAHIFGEFNQVENERNRQFDGTGLGLAISQRLIQMMGGTVWV 426 Query: 775 SSSD 778 S + Sbjct: 427 ESEE 430 >gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 428 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 132/260 (50%), Gaps = 24/260 (9%) Query: 547 DSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 D +A + L E LRKA + +K+ + +S+E R+PLT+I+ ++LL+ Sbjct: 152 DLQQANQQLRELEAQLRKALAQEQEFNHLKSRMIIAISHEYRTPLTSILSSSELLEAYCH 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST----IVLNDLLNEVK 655 SKQSQ+ + I A+ + +L+ +++ L + ++ + + + DL+++++ Sbjct: 212 RWDKSKQSQHFQRIRAAVQRITDLMGNVMFLNKAEFEQLEFQPTPLDLGVFVRDLVDDMQ 271 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 Q K H + + D G + D + LLQI + ++ NA+ +S G V++K Sbjct: 272 QHYGDKHH-----LILNIDQDCGRPLFDSKLLLQILTHLIDNAIKYSPNGGKVLIKFTCQ 326 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGH 771 N IF V ++G IP ++FN F HRG G GLGL+IV+ +++HGG Sbjct: 327 NNQVIFEVSDDGIGIPRKEQHNLFNAF----HRGSNVENISGTGLGLAIVKKCVDIHGGT 382 Query: 772 VSISSSDEGVTTINCRIPSK 791 +S++S TT +P + Sbjct: 383 ISLNSDVSVGTTFTVMLPRR 402 >gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 993 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 15/280 (5%) Query: 525 VLEYSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +L +S+ P+ ++TF ++T + AL + +A A+ K+ F+ ++S+E+R+ Sbjct: 268 MLTFSVNCTPIAGQGYLVTFEDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRT 327 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++GFTD+L+ L S + ++ I S LL L+NDILDL+ +++G ++ Sbjct: 328 PLNAVLGFTDVLRRG-LVSNGDEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTET 386 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 L+D++ +V ++ K E N+ +KV + + +D RL Q+ + ++ NA+ F Sbjct: 387 IDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKF 446 Query: 702 SSKGSTVILKA-------ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 + GS I+ + A + D I V + G + D +F+ FV R+ Sbjct: 447 TESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRK 506 Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G GLGLSI GG +++ S +T +P+ Sbjct: 507 FGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRVELPT 546 >gi|288940116|ref|YP_003442356.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288895488|gb|ADC61324.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 451 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L+ E A+ K++F+ ++S+ELR+PL I G L++ S ++ KQ+ +++ + Sbjct: 199 LSLAKEQAEAANRAKSAFLANMSHELRTPLNAITGMAYLVRAS---GVSVKQAGWLDTLD 255 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL +++ IL+L+ ++AG M+L+ I L+ L+ V +I + ++ I + D Sbjct: 256 GASRHLLEIISAILELSKIEAGGMELDTVPIRLDTLVASVVDTILPQARAKHLHIGLELD 315 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSI 730 + D RL Q +NA+ F++ GS T+ K +F+ F V++ G + Sbjct: 316 PVSTPLMGDPARLRQALLNYAANAVKFTATGSVTLRTKVIEQTPEFVMMRFEVEDTGVGL 375 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 P D+ +F F + RR G GLGL++ +L GG V +SS+ EG T Sbjct: 376 PADVIDRLFENFEQADNSATRRFGGTGLGLAMTRRLAHLMGGTVGVSSTPGEGST 430 >gi|196038119|ref|ZP_03105429.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196031389|gb|EDX69986.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 458 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIN 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ + +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|83647357|ref|YP_435792.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635400|gb|ABC31367.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 935 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 2/228 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D +KN F+ VS+ELR+PLT I G LL + +LG L + Q + ++ LL Sbjct: 679 KRLDILKNEFISTVSHELRTPLTAINGSLALLDSGRLGLLPDQAKQMLHIAYSNCERLLR 738 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+LD+ +++G ++ ++ L DL+ E + + ++ + + A Sbjct: 739 LINDLLDIQKIESGGLEFSFERADLRDLIEEALNANRQLAEKASVTLVFATPESPALVKA 798 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 DR RL Q+ ++SNA+ FS V L + +V++ G +P + +F +F Sbjct: 799 DRDRLRQVLDNLISNAIKFSPADEAVTLTLNAHAHYWEVAVQDQGPGVPPEFRNKIFQKF 858 Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 R G GLGLSI + H G + S T R+ Sbjct: 859 AQADSSDTRLKGGTGLGLSISREIVQRHHGQIGYHSEANCGATFYFRL 906 >gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] Length = 559 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 11/228 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K F+ +S+E+R+P+ +IG DLL S+L +Q +Y I S+ L+N++ Sbjct: 165 AAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QDEQREYATIIRNSADALVNII 221 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + +++G M+L L + EV + + + N+ + + ++ S V D Sbjct: 222 NDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPSMVFGD 281 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ ++SNA+ F+++G ++ KA + F+VK+ G I +F Sbjct: 282 MGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLF 341 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 F RR G GLGL+I +S + + GG + + S + EG T + Sbjct: 342 KPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFV 389 >gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli O55:H7 str. USDA 5905] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|298487112|ref|ZP_07005162.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158355|gb|EFH99425.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1003 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 645 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 762 Query: 789 PSKE 792 P E Sbjct: 763 PMHE 766 >gi|288933363|ref|YP_003437422.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288888092|gb|ADC56410.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 779 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IPE +F + V ++H G+ G G+GL++ GG +S++ Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491 Query: 776 SSD-EGVT-TINCRIPS 790 S +G T T+ P+ Sbjct: 492 SQPGKGATFTLTVHAPA 508 >gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella dysenteriae Sd197] gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 1617] gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae Sd197] gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella dysenteriae 1617] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1472 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--ELSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN I + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D+ +L + ++SNA F+ S GS + D+G + V++NG IP++ +F Sbjct: 1057 DKDKLSIVIRNVISNAFKFTPSGGSIYVTTGLTDDGKSCYVRVEDNGVGIPQNKLSEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA+ +G G+GL++ + +NLH G + S + Sbjct: 1117 RFSQGENANNPHYQGTGIGLALSKEIVNLHHGIIRAESPE 1156 >gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 549 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 16/245 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609 AE+AL + A + K+ F+ +S+E+R+P+ +IG +L L+ S+ + +Y Sbjct: 162 AEQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGMAELALRASR----EPRILEY 217 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S T LL ++NDIL+L+ ++AG ++L L L + ++A + ++R+ Sbjct: 218 LGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDLEDTLATLAPSVQAKSLRL 277 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD------FIF 721 DG + + V D RL Q+ + ++ NA+ ++ KG T+ ++ A + D +F Sbjct: 278 VHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHKGLITLSVRLADEAADQSGGMRLLF 337 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V+++G IP+D +F F V++ G GLGL+I ++ L G + + S+ Sbjct: 338 QVRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAISRHYVELMDGRI-WAESEP 396 Query: 780 GVTTI 784 G +I Sbjct: 397 GTGSI 401 >gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1436 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 13/227 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ---YVEYISASSTILLNLVN 625 K+ F+ ++S+E+R+PL ++GF +++G+ + ++ + I S +LL ++N Sbjct: 844 KSEFLANMSHEIRTPLNAVLGF------AQIGARETDPNRARTFFRRILDSGQLLLGIIN 897 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADR 684 DILD + ++AG + ++ + + L ++ + T+ + +R + D L +F+ D Sbjct: 898 DILDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDD 957 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q+ + +LSNA+ F+ +G+ V R+ G +FSV++ G + ED ++F F Sbjct: 958 LRLSQVLANLLSNAVKFTDQGA-VTFGIRREEGWIVFSVEDTGIGMHEDYLANLFQPFEQ 1016 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + + L GG + S T R+P Sbjct: 1017 ADGSITRRYGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLP 1063 >gi|237721170|ref|ZP_04551651.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229450005|gb|EEO55796.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 644 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +++E+ L + +++ +K++F+ ++S+E+R+PL +I+GF+D+L GS +Q Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 456 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y + I +S +LL L+NDILDL+ ++A + L + + L ++V S++ + + Sbjct: 457 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 516 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727 + + V D QR+ Q+ +LSNA F+ G T+ + +FSV + G Sbjct: 517 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNGETQMAVFSVTDTG 576 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ VF RF Q G GLGLSI + ++ G + I G Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627 >gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 533 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++T V++ E L E D +K++F+ ++S+E+R+PL I+GF LL S Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342 Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + K+ Q YV+ + ++ +LL L++DILDL+ ++AG + + + ++ ++ Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 K + + + + D D++RL+Q+ + ++NA+ F+++G ++ + ++ Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + F+V + G I D VF+RFV N+ +G GLGLSI S I GG + Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGAE 514 Query: 776 S 776 S Sbjct: 515 S 515 >gi|227072259|gb|ACL81480.3| ethylene receptor [Dimocarpus longan] Length = 740 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLELVTFNLHAAFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + I + L + V D +RLLQ ++ NA+ FS +GS I ++ Sbjct: 432 PIASVKKLMITLNLAPDLPEYAVGDEKRLLQTLLNVVGNAVKFSKEGSVSITAFVAKSES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD+ DF VK++G+ I P+D+ K +F +F N R G GL Sbjct: 492 LRDSRAPDFFAMPSENHFYLRVQVKDSGTGINPQDIPK-LFTKFAQNQTLATRNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574 >gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1099 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 109/435 (25%), Positives = 193/435 (44%), Gaps = 41/435 (9%) Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQ 436 FS+ K W N + + +P G TI + E+++ + E + + + Sbjct: 442 FSLEKRLRQKSGQWRWAN---VTISAVQHPDGFPCTIGVIEDISERKQAEAQRQSADSFR 498 Query: 437 GETIDHLSEGVAVFG-----PDGRIKLSNPAFRSL--WKTEE-NRLS------PGTHIRN 482 ID +EG+ + P R + N SL + EE NRL P + IR Sbjct: 499 RALIDRAAEGICMCHGIEEFPYVRFTVWNQRMVSLTGYTMEEINRLGWYQTLYPDSEIRE 558 Query: 483 IAATCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQT 538 A R G DL A IT D E++ + + S+IP + Sbjct: 559 --AAIERMSRMRQGEDLMAEEWTITRADGEQRVV----------CISTSLIPGVEGDYHA 606 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + ++T E A+ + EA A++ K++F+ H+S+ELR+PL I+GF L++ Sbjct: 607 LAVMQDITQRKHTELAMQQAKEAAEAANQAKSAFLAHMSHELRTPLNAILGFAQLMERDT 666 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L L + Q + + I+ S LL L+ND+L+++ ++AG + L+ + L+ LL +++ Sbjct: 667 L--LTTAQKESLSIINRSGEHLLGLINDVLEMSKIEAGRIVLHKAQFDLHRLLQTLQEMF 724 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + + + +S ++D +L Q+ +LSNA+ F+ G + D+ Sbjct: 725 RVRATAKGLVLTMNLSPSLPQLIISDEGKLRQVLINLLSNAVKFTDVGHITLTANYADDP 784 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 D F V++ G I +F FV + + G GLGL+I F+ L GG + + Sbjct: 785 DPRLWFQVEDTGRGIAAAEQHHLFEPFVQTTTGANAQEGTGLGLTISHQFVQLLGGELRV 844 Query: 775 SSSDEGVTTINCRIP 789 S +T + +P Sbjct: 845 ESEVNRGSTFSFDLP 859 >gi|159901279|ref|YP_001547526.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894318|gb|ABX07398.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 810 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 129/248 (52%), Gaps = 7/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T+S R AL +++ L+++++++ Q V ++L++PLT II + DLL+ +L Sbjct: 565 GITNS-RLYSALQTEHQQLQRSEQLREQMNQMVVHDLKNPLTVIINYLDLLRRQ---ALP 620 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q + VE SS L+ LV+D+LD A + G M +N + + LL+ V + + Sbjct: 621 ESQRELVEGARRSSRTLVGLVSDLLDTARLQEGHMSINREHVPIAPLLHNVANELRSWAE 680 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + I + +D +L + + D + ++ S +LSNA+ + + + L A + + F V Sbjct: 681 QEAKIISIQADPELYATI-DGDLMRRVLSNLLSNAIKHTPIQTEIKLIAYQADSQITFQV 739 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +NG IPE + S+F+RF ++ + ++R GLGL + + H G + + S+ Sbjct: 740 ADNGPGIPEALQASLFDRFTILNEQNHTRQRSTGLGLYFCKLAVEAHEGEIGVVSNSTTG 799 Query: 782 TTINCRIP 789 T +P Sbjct: 800 TIFTITMP 807 >gi|30026188|gb|AAO44976.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026194|gb|AAO44979.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] gi|30026196|gb|AAO44980.1| ethylene receptor [Arabidopsis lyrata subsp. petraea] Length = 532 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 329 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407 >gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1127 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A+ +K+ F+ +S+ELR+PL I+G++ L+++ N + Sbjct: 729 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 785 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L+ V + + I Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKI 843 Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++ + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V++ Sbjct: 844 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVTMDVEDERLRLCVQD 902 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 903 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959 >gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ +S+E+R+PL ++G LL+ + + + Q YV+ IS+S + L+ ++ND Sbjct: 406 QAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPM---DRSQRFYVDTISSSGSSLMAVIND 462 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685 ILD A +++G + L L D+++E + + +R+ V + +G D Sbjct: 463 ILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLENGVPRRIQGDPT 522 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNR 741 RL Q+ +LSNA+ F+++G + + R + +F+V ++G I E +F Sbjct: 523 RLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGKPHLVFAVSDSGIGISEQALAQLFES 582 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F RR G GLGL+I + + + GG + + S+ T IP Sbjct: 583 FAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTLGQGTRFAFDIP 632 >gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] Length = 911 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 277 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 332 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + +++ Sbjct: 333 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQL 392 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 V D RL QI + +L NA+ F+ +G+ IL A + D + + + G I E Sbjct: 393 VGDAMRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTGIGISESQQA 452 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 +F F RR G GLGL I E + GG +S S D G T Sbjct: 453 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGST 501 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 130/254 (51%), Gaps = 11/254 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +A++AL + A++ KN F+ ++S+E+R+PL I G +L ++ LN Sbjct: 247 DITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLST---PLN 303 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q +++E +S + L++DILDL+ ++AG ++ T L D+ + + + K Sbjct: 304 SEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIKSR 363 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNG 717 E I + +S + + D + QI ++ NA+ F+ G + ++ +D Sbjct: 364 EKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHGQVTLDIHPLPQSHQDQL 423 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +F+V + G IP+D +F F V+ + + G GLGL++ L GG +S+ Sbjct: 424 QVLFTVSDTGPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTISVD 483 Query: 776 SSDEGVTTINCRIP 789 S++ T+I +P Sbjct: 484 SAEGQGTSIYVTLP 497 >gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] Length = 435 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E L + + +A+ +K +F+ ++S+E+R+PL I+GF+ +L ++ +++ ++ Sbjct: 183 KLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTED---IAEKKEF 239 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIR 668 I+ ++ +LL +V+DILD++ ++AG + L+ + L+DL+ E K +IR Sbjct: 240 CNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMKAAGRLDIR 299 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I G + D +R+ QI + LSNA+ + +G I + G I V + G Sbjct: 300 IHKPGQGYMAEL--DTKRVKQILNNFLSNALKHTQEGYIDITYGVTEQGIEI-KVTDTGC 356 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP+D +F RF Q GVGLGL I +S GG + ++S TT+ + Sbjct: 357 GIPQDKLPVIFERFEKVDSFTQ--GVGLGLPICKSIAECMGGSIGLTSEAGVGTTVWVTL 414 Query: 789 P 789 P Sbjct: 415 P 415 >gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 873 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+PLT ++G+ DLL L ++Q++ V I + L +V+D+L Sbjct: 493 KTDFLATMSHEIRTPLTAVLGYADLLMARS--DLEAEQARLVGRIVTAGEALRTIVDDVL 550 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + ++AG + L L DL+ E + + + I V I G V D RL Sbjct: 551 DFSRIEAGRVDLAPRPFSLADLIEEALALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRL 610 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNR 741 QI +L+NA+ F+ GS + L ARD + SV++ G IP D +F R Sbjct: 611 RQILLNLLNNAVKFTPAGS-IGLAVARDPTGPAEGRGLLISVRDTGIGIPADKHARLFER 669 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 F V + + Q G GLGL+I + G + + S + EG T Sbjct: 670 FSQVDGSIQRQYGGTGLGLAISRRLVEAMHGRIGVESREGEGST 713 >gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri 4343-70] gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-218] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1082 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD +A AL E K+ K+ F+ +S+E+R+P+ +IG T+LL Sbjct: 688 DITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQDNPAP-- 745 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y+ + SS LL L+NDILD ++AG ++L + +N L + QS K Sbjct: 746 -RQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKNKAE 804 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNG 717 N+ +++ D ++ + + D+ RL Q+ + +LSNA+ F+ G TV LK D Sbjct: 805 ANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFTRDG-TVFLKLELEQLRYDKV 863 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F +++ G I + +F+ F N+ + G GLGL+I + I LH + + Sbjct: 864 TIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTIKLV 923 Query: 776 SS 777 S+ Sbjct: 924 SN 925 >gi|293372871|ref|ZP_06619245.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632160|gb|EFF50764.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 250 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 32/257 (12%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + + A R L EK E +K SF+ ++S+E+R+PL +I+GF ++L G + ++ Sbjct: 13 EELEAARLLAEKAE-------LKQSFLANMSHEIRTPLNSIVGFANILALED-GLSSVER 64 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATKM 662 +Y+ I+ +S +LL L+NDIL+L+ +++G M ++ + +L++++ + IA ++ Sbjct: 65 EEYIGAINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRL 124 Query: 663 ----HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 +NI +++ DR+RL+Q+ + L+NA F+ G + D G Sbjct: 125 EFLKEVDNIPLEI---------NVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEG 175 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS- 776 V++ G IP + + +F+RF Q G GLGLSI + I GG + + S Sbjct: 176 HVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIELKSE 233 Query: 777 ---SDEGVTTINCRIPS 790 + CR+ S Sbjct: 234 VGKGSRFTVILPCRVVS 250 >gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 876 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 36/284 (12%) Query: 526 LEYSIIPLPN-AQTMLTFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 L +I P+ N A + +FV V T+ + E L E E D K F+ +S+E+ Sbjct: 311 LRAAITPVKNRAGEIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEV 370 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL I+GF LL ++ L +Q +YVE I SS L+ L DILD A +++G +KL Sbjct: 371 RTPLNGIVGFASLLLETE---LTPEQLEYVETIRTSSETLIQLTGDILDYARIESGRLKL 427 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + AT + + I D + VAD RL Q+ +++NA+ Sbjct: 428 EPQPCDPRECVENALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAV 487 Query: 700 DFSSKGSTVI------------------LKAARDNGD-------FIFSVKNNGSSIPEDM 734 F+ G + L +AR+ D FSV++ G I Sbjct: 488 KFTPTGEVAVDVRVVASSPAPETADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAH 547 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL+I ++ + L GH++ +S Sbjct: 548 HPKIFRPFSQVDDSTTRRYGGTGLGLAICKNLVGLMNGHITFTS 591 >gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia thailandensis MSMB43] Length = 1084 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 15/255 (5%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNII 588 L A++ LT N+ D RA +L E+ L++A+ K+ F+ ++S+ELR+PL I+ Sbjct: 581 LRRARSELTNANL-DLQRAHDSLEERVRQRTRELQEANRAKSIFLANMSHELRTPLNAIL 639 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G+ + + +Q + I S LL L+ DILDLA ++AG + L L+ Sbjct: 640 GYAQWFRRDA--AAGERQVRAASIIKQSGEHLLMLITDILDLAKIEAGKLDLCPGPAGLD 697 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG-- 705 +L+ V I K E + + + L V D +RL Q+ +L NA+ F+S+G Sbjct: 698 GVLSSVMDIIRVKSEEKGLACVLDAASDLPPSVWIDDKRLRQVLLNLLGNAVKFTSRGRV 757 Query: 706 --STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 +L+ A + F V++ G I D S+F+ F A Q R G GLGLSI Sbjct: 758 ELRVSLLQPADELARVRFEVRDTGVGIAHDRLTSIFDPF-EQAGEAQSRAGGTGLGLSIS 816 Query: 762 ESFINLHGGHVSISS 776 + L GG + + S Sbjct: 817 RQLVRLMGGEIEVES 831 >gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3073 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ E E A+E K+ F+ ++S+ELR+PL I+G+ +L+ S+ SL++K+ + V+ I Sbjct: 2595 AMAESKEKADAANEAKSLFLANMSHELRTPLNGILGYAQILRRSE--SLSNKELEGVDTI 2652 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LLNL+NDILD++ ++A ++L L LL V + K + I+ Sbjct: 2653 YQCGSHLLNLINDILDISKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQP 2712 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGS 728 +L V D +RL Q+ +L NA+ F+ GS + + F V + G Sbjct: 2713 SSQLPQQVEVDDKRLQQVLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGV 2772 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 I E +F F V + H+ Q G GLGL+I + + L G + ++S + Sbjct: 2773 GIAEQDLVKLFQSFKQVGDQHK-QAEGTGLGLAISQRIVRLMGSEIHVTSQPQ 2824 >gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] Length = 986 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 147/264 (55%), Gaps = 19/264 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL+E A A++ K++F+ ++S+++R+P+ IIGFT L Sbjct: 444 ILVMSDRTSDWKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----A 499 Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +++ K+ Y+ I +SS LL+L+NDILD++ +++G + L + + L+++L+++K Sbjct: 500 VSNIDDKKRVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKT 559 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I+ ++H + + + + D D+ RL Q+ +LSNA+ F+ G TV ++ + Sbjct: 560 IISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQC 619 Query: 716 NGD------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765 +G + VK+NG + ++ + +F+ F S R Q G GLG++I ++ + Sbjct: 620 HGTQKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIV 677 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 ++ GG + + + + T R+P Sbjct: 678 DMMGGTIEVQTEQDKGTEFIVRLP 701 >gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 EDL933] gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. Sakai] gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4113] gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4401] gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4501] gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4486] gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4196] gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4076] gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC869] gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC508] gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4206] gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4045] gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4042] gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4115] gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14588] gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14359] gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. FRIK2000] gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. FRIK966] gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Escherichia coli O157:H7 str. EDL933] gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli O157:H7 str. Sakai] gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4196] gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4113] gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4076] gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4401] gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4486] gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4501] gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC869] gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC508] gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4206] gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4045] gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4042] gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4115] gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli] gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. TW14588] gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O157:H7 str. TW14359] gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. EC1212] gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. 1125] gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli O157:H7 str. 1044] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus MO6-24/O] gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus MO6-24/O] Length = 780 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L +Q +Y Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + +L + D RL Q+ ++SNAM F+ +G V+ ++ DF I V++ Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ IN+ G +++ SS+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499 Query: 783 ---TINCRIP 789 TI+ +P Sbjct: 500 STFTISIHVP 509 >gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 3_2_53FAA] gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 3_2_53FAA] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 965 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 3/251 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF +VRA ++ AL + D K +F +VS+E R+PLT ++G + +S Sbjct: 296 TFTTAVSNVRAYEQEQQRAAALAEIDRAKTAFFSNVSHEFRTPLTLMLGPLEDSLSSHSE 355 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L Q + + I ++ LL LVN +LD + ++AG +K Y L L +V + + Sbjct: 356 PLTPSQRERQQLIHRNALRLLKLVNTLLDFSRLEAGRVKATYRATNLPKLTADVASAFRS 415 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 M + + +V L D +I ++SNA F+ G V +K + G Sbjct: 416 AMEKAGLNYRVTVPDSLEPVYVDHDMWEKIVLNLISNAFKFTFHGE-VEVKLTQLEGRVR 474 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V++ G+ +PE +F RF V G G+GL+++ + +HGG + + S + Sbjct: 475 LTVRDTGTGVPEAELPRLFERFHRVETTQGRTFEGTGIGLALIMELVKMHGGILGVQSVE 534 Query: 779 EGVTTINCRIP 789 + + +P Sbjct: 535 NRGSAFHVELP 545 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 11/282 (3%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 R + +E L +Y + P +A+ +L + ++VR R +E+ R+ E++ Sbjct: 689 RAGEEARIEGLQAGANDYLVKPF-SARELL--ARIENAVRLARERSERERLARERGELEQ 745 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 + VS++LR+P++ I+ T L ++G+L + ++ V I AS+ + ++ D+LD Sbjct: 746 QLIGIVSHDLRNPISAILMSTSFL--FRMGTLEERAAKVVTRIQASAERAMRMIRDLLDF 803 Query: 631 ATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689 G +++ L + + + E + + + + G + D RL Q Sbjct: 804 TQARLGGGLRIERRPAELQHIAWLAVEEVKLAHPERKVLFEAVGV-QTGEW--DDDRLFQ 860 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 + + +++NA+ +S ++V ++ + V N G I +++ +F H G Sbjct: 861 LLTNLITNAVKYSPSSTSVTVRLTGTQTEAQIDVHNEGEPISQELQARLFMPMQQGGHGG 920 Query: 750 QRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R G +GLGL IV + HGG +++ S+ E TT R+P Sbjct: 921 DRAGRSIGLGLYIVSQIVRAHGGAINLLSTPEVGTTFTVRLP 962 >gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli UTI89] gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli APEC O1] gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli O127:H6 str. E2348/69] gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli S88] gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli NC101] gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli 2362-75] gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli M605] gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli UTI89] gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli APEC O1] gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli O127:H6 str. E2348/69] gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli S88] gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15] gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli IHE3034] gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli NC101] gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli UM146] gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli 2362-75] gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3] gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263] gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2] gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli AA86] gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli M605] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297] gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297] Length = 951 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+++K F+ ++S+E+R+PL IIGF LL S +L KQ Y+ I +SS +LL Sbjct: 277 QQANQVKTEFLANMSHEIRTPLNGIIGFARLLARS---NLTKKQEDYISTIMSSSQVLLT 333 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681 ++ND+LD ++AG + L+ + L + + EV + N+ + + + V Sbjct: 334 IINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFADVPEQLV 393 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFI---FSVKNNGSSIPEDMCKS 737 D RL Q+ + ++SNA+ F+++GS VI + G+ + SV + G + + K+ Sbjct: 394 FDPLRLKQVLTNLISNAIKFTNEGSVVIRTMIEQQQGNKVTVRVSVTDTGIGLSKTQQKA 453 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 +F F R G GLGL I + + GG + + S DEG T Sbjct: 454 LFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGST 501 >gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|323691648|ref|ZP_08105910.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323504282|gb|EGB20082.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 374 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 123/240 (51%), Gaps = 6/240 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN+ + R L +K R+A+ KN + +V+++LR+PLT+IIG+ +LL + K+ Sbjct: 117 VNLNKMMEDIRRLMDKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKVQIP 172 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y++ A S L L+ D+ ++ G M ++ + + LL+++ + Sbjct: 173 QEMQKKYIDIAYAKSKRLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSF 232 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ ++ S+ AD L ++F +++NA+ + + G V++K S Sbjct: 233 VDKNLSYELQSNVPGKVITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEPTVTVS 292 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V N G IP D VFN+F V + G GLGL+I ++ +++HGG + ++S G Sbjct: 293 VTNYGYVIPADELPLVFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLNG 352 >gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 576 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 25/335 (7%) Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 +G+ V R+ L NPA L + + S G + +I + L A+ Sbjct: 248 DGIIVVDAQRRVMLINPAACKLVGADSEK-SAGKKLISIIRN----------YQLDEAVK 296 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 + + + + L + +L+ I P+ + ++ SV R +TE L+ Sbjct: 297 KTLKEGSPYFKEIVLLPREQILKVHITPIKDRAG-----RISGSVIVMRDITE----LKH 347 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 +++++ F+ +VS+ELR+PLT+I GF + L + +++ I A + L L+ Sbjct: 348 LEKLRSEFLANVSHELRTPLTSIKGFVETLLEGAYKDPGLAK-RFLSIIDAEAGRLYRLI 406 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N+++DL+ ++ +KL + +L+NEV ++ E ++ L AD Sbjct: 407 NNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADP 466 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF- 742 L Q+F +L NA+ ++ G V ++ A GD + F V + G IPE+ VF RF Sbjct: 467 DWLRQVFINLLDNAIKYTQSGGRVWIE-AEPKGDVVEFRVCDTGIGIPEEDLPRVFERFY 525 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V A + G GLGL+IV+ + GG + + S Sbjct: 526 RVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVES 560 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 14/233 (6%) Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 A++ ADE K+ F+ ++S+E+R+P+ IIG + L++ + LN KQS YV I S+ Sbjct: 999 AVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQT---DLNRKQSDYVTKIQNSA 1055 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL ++NDILD + ++A ++L + LND + + Q IA K + + + + + L Sbjct: 1056 ESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHKTQQKGLELLIDIEPNL 1115 Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732 + D RL QI + +NAM F+ +G +I A + + F+VK+ G + Sbjct: 1116 PVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAVEQHEQQVTIEFAVKDTGIGMTP 1175 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 + +F F R+ G GLGL+I ++ L G + + SS EG T Sbjct: 1176 EQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGEGST 1228 >gi|254442776|ref|ZP_05056252.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257084|gb|EDY81392.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1251 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 132/248 (53%), Gaps = 16/248 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + ++D++K+SF+ ++S+E+R+P+ IIGF++LL + + ++ +Y Sbjct: 858 RELEKAKLQAEESDQLKSSFLANMSHEIRTPMNAIIGFSNLL--CQRDNDPDEEEEYSNI 915 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-----I 667 I ++ T L +L++DILDL+ ++AG +++ LN L+ E+ ++ + + + Sbjct: 916 IQSNCTSLSHLIDDILDLSIIEAGQLQVKQEDFDLNSLMRELDNVFRAQLKQESREHLAL 975 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSV 723 R++ + + DR RL QI + ++SNA+ F+S G I AA G F V Sbjct: 976 RVEEHLGERSSYILCDRDRLRQILTNLISNALKFTSTGYVSARYTIDPAA---GKIRFEV 1032 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G I S++ +F + + + RG GLGL+I ++ + L GG +++ S+ Sbjct: 1033 EDTGIGIEAKHLDSIWVQFRKIEDHTKQLFRGTGLGLAITKTLVQLLGGSITVQSTPNEG 1092 Query: 782 TTINCRIP 789 + IP Sbjct: 1093 SCFKFEIP 1100 >gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] Length = 811 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 21/262 (8%) Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +VT+ +R LTE+ AL+ +A++ K F+ +S+E+R+P+ IIG T T Sbjct: 263 DVTELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMT----T 318 Query: 597 SKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 ++ +Q S +E I SS L+ L+NDILD++ + G MK+ + L ++ V Sbjct: 319 IAAAYIDDRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVVESV 378 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--K 711 + + + + V ++D S V D RL QI +LSNA+ F+ +G ++ + + Sbjct: 379 SSIVYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRMEIR 438 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFIN 766 + N D + F+V + G + ++ ++F+ F +A Q+ G GLG+SI ++ + Sbjct: 439 QIKKNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKNLVT 498 Query: 767 LHGGHVSISSSDEGVTTINCRI 788 L GG +S+ S TT + Sbjct: 499 LMGGTISVKSKPGKGTTFTVEL 520 >gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 788 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 123/243 (50%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + ++T AE A+ E +A + K+ F+ ++S+E+R+P+ IIG + L +KL Sbjct: 29 AYQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKL- 87 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + KQ Y+E + S LL ++NDILD + ++AG M + L D+++ + + Sbjct: 88 --DKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGL 145 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 K + + + ++ + + D RL QI + +NA+ F+ KG ++ ++ + D Sbjct: 146 KAEDRGLELLFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSED 205 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + F V+++G + + C +F F R+ G GLGL+I ++ + L G + Sbjct: 206 QAELHFWVRDSGIGMTPEQCGKMFKSFSQADTSTTRKYGGTGLGLAISKTLVELMDGRIW 265 Query: 774 ISS 776 + S Sbjct: 266 VES 268 >gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 917 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 16/256 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L EK L + K+ F+ ++S+ELR+PL +I+ +++L+ + +L+ + +Y Sbjct: 487 AKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDEEEYA 546 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +S LL L+NDILDL+ V++G + + + + +++L ++++++ + + +++K Sbjct: 547 RIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQKKVQLK 606 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718 + + + + D +R QI +LSNA F+ GS + L A D Sbjct: 607 INKAQDVPNIIHTDEKRFQQIVKNLLSNAFKFTESGSVTVSIQRVADHRLTTAMRTVDTD 666 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +V + G IP++ + +F F R+ G GLGLSI F L GG +S+ Sbjct: 667 CWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLLGGWISL 726 Query: 775 SSSDEGVTTINCRIPS 790 SS +T +PS Sbjct: 727 SSEVGKGSTFTLYLPS 742 >gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 2a str. 301] gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 2a str. 2457T] gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB [Escherichia coli str. K-12 substr. MG1655] gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii Sb227] gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. W3110] gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri 5 str. 8401] gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli E24377A] gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli ATCC 8739] gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. DH10B] gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli SMS-3-5] gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli 53638] gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli B7A] gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli E22] gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli E110019] gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli B171] gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli 101-1] gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli SE11] gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli IAI1] gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli 55989] gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli IAI39] gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli UMN026] gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BW2952] gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43] gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9] gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O26:H11 str. 11368] gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O111:H- str. 11128] gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli O55:H7 str. CB9615] gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1412] gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354] gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli B185] gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli B088] gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1302] gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1] gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1] gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1] gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1] gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1] gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1] gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1] gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1] gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1] gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1] gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7] gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli M718] gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA271] gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli H591] gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli H299] gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9] gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB gi|40951|emb|CAA37397.1| arcB [Escherichia coli] gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 2457T] gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB [Escherichia coli str. K-12 substr. MG1655] gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227] gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K12 substr. W3110] gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5 str. 8401] gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli E24377A] gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli str. K-12 substr. DH10B] gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli SMS-3-5] gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli 53638] gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli B7A] gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli E22] gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli E110019] gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli B171] gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli 101-1] gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli] gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11] gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli 55989] gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli IAI1] gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli IAI39] gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli UMN026] gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli LF82] gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43] gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BW2952] gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli BL21(DE3)] gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O26:H11 str. 11368] gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O111:H- str. 11128] gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1] gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri 2002017] gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli O55:H7 str. CB9615] gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli B088] gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1412] gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli B185] gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354] gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli FVEC1302] gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1] gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1] gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1] gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1] gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1] gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1] gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1] gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1] gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1] gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1] gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7] gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Escherichia coli ETEC H10407] gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli O83:H1 str. NRG 857C] gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2a str. 2457T] gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli W] gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli DH1] gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1] gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli 3431] gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri CDC 796-83] gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli EC4100B] gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. G5101] gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H- str. 493-89] gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H- str. H 2687] gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. LSU-61] gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli EPECa14] gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli E128010] gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli LT-68] gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli 1180] gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli 1357] gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11] gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482] gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120] gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489] gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863] gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007] gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167] gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli H736] gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli M718] gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA271] gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli H591] gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli H299] gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii 3594-74] gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9] gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli UMNK88] gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-671] gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri 2930-71] gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-272] gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-304] gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri K-227] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli CFT073] gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli 536] gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli F11] gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972] gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1] gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1] gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1] gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli CFT073] gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli 536] gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli F11] gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972] gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1] gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1] gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1] gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli ABU 83972] gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1] gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli RN587/1] gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli STEC_7v] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1] gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 TLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] Length = 1037 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 130/240 (54%), Gaps = 10/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +++ +AE AL E +A K+ F+ +S+E+R+P+ IIG DLL + L + Sbjct: 489 DISQQKQAENALIAAKEEAEQAARSKSEFLAVMSHEIRTPMNGIIGMLDLLLENNLNTSQ 548 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q+ Y+ + SA S LL L+NDILD + +DA ++L L +L + + +A + Sbjct: 549 SHQA-YLAHTSALS--LLGLLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLT 605 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721 N+ I + + + +AD R+ QIFS ++SNA+ F+ +G VI +N + + Sbjct: 606 NPNVEIILDMVQVEHSMILADSTRIRQIFSNLVSNALKFTEQGEVVITVRLEENDENTWQ 665 Query: 722 ---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 S+K++G IP+D S+F++F RR G GLGL+IV+ G V++SS Sbjct: 666 LNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSS 725 >gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B str. REL606] gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli B str. REL606] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1936 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L KQ ++ Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+A+ T LL+L+NDILDL+ +++G + L + L DL+ + ++ E ++ Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDLVENLNRTFRQLAEERHLAFV 1349 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + + G + D +RL Q+ +LSNA F+ KGS V L+ G Sbjct: 1350 IDVEPGLPRAVRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLRIGSAEGSPLRAGSQWLAL 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I ED + +F F R+ G GLGL+I L GG + + S Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465 >gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 974 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 114/503 (22%), Positives = 221/503 (43%), Gaps = 53/503 (10%) Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQ------FHNRSFVELWEIDLAFLATNPSNDE 354 +++ + +E L +L ++ Q+ YLQ + N + + +++ A T+ D Sbjct: 475 IHESVAQMWEPLKDLQNNFPLW-QDTYLQENEGGRYRNHESLAVGDVETAGF-TDCHLDN 532 Query: 355 LLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413 L F +R+ +P + + W + Y++ W LH I +N G + Sbjct: 533 LRRFEIRAFLTVPVFVGEQLW--GLLGAYQNGAPRH--WQAREIHLLHQI--ANQLGVAV 586 Query: 414 WMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472 + + L Q +T NTL + +D+L++G+ V GRI NPA +++ E Sbjct: 587 YQAQLLARFQEQSKTMENTLADLTA-IVDNLADGLLVIDLFGRITRYNPALLAMFDLEGL 645 Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532 L + A Y+ E+ L + +E+K + +EL + I Sbjct: 646 EL--------LGAGVDAYFPET----LNQLLAKPEREEQKLVTADVELSQGRQGQALITS 693 Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 + + + + +V R +T + R+ + +K F+ VS+ELR+PLT+I+GF Sbjct: 694 ITSHENGCEYPQCLGAVIMIRDVTHE----REVERMKTDFLATVSHELRTPLTSILGFAT 749 Query: 593 L--------------LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638 + L LG + + + I + + L L+ND+LD+A ++AG Sbjct: 750 VIQDKLNRVIIPELDLAQPHLGKATERVMRNLAIIESEAQRLTVLINDVLDIAKMEAGQE 809 Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698 + ++ +I + + NI ++ + L F+ D R+LQ+ +LSNA Sbjct: 810 SWQEQPCAIGPIIERAIATITPQAQKKNISLQGDLEPGLPDFIGDENRILQVVLNLLSNA 869 Query: 699 MDFSSKGSTVILKAARDNGDFIF-SVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGV 754 + F+ KG +I + + ++++ + ++G I P D K F + + + +G Sbjct: 870 VKFTPKG--LITARSHFHQNYLWVEIIDHGPGIHPADQEKIFEPFQQGGGDVLTDKPQGT 927 Query: 755 GLGLSIVESFINLHGGHVSISSS 777 GLGL I + + HGG + ++SS Sbjct: 928 GLGLPICKKIVEHHGGTIGVNSS 950 >gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA143] gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA143] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTTEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1260 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 + +D K +F+ ++S+++R+P+ I+GFTDL + ++ K Y+ + SS L Sbjct: 881 QSSDRAKTTFLSNMSHDIRTPMNAIVGFTDL----AMAHIDEKDQVLDYLHKLGQSSNHL 936 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+L+ND+LD++ +++G M L+ L +++N +K + ++ N+ V D Sbjct: 937 LSLINDVLDMSRIESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEMDISESGI 996 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDM 734 V D+ RL Q+ +LSNA+ ++ G ++ + + D+ + F +++NG + D Sbjct: 997 VCDKLRLNQVLLNVLSNAIKYTQAGGSIHMHISEKESMKPDSSMYEFRIRDNGMGMNPDF 1056 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 K+++ F +++ +G GLG+SI ++ + + GG + I S + T + Sbjct: 1057 LKTIYEPFTRANSSTVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKGTEV 1108 >gi|149922270|ref|ZP_01910707.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] gi|149816903|gb|EDM76389.1| sensory box histidine kinase/response regulator [Plesiocystis pacifica SIR-1] Length = 590 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 4/216 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + + +KN FV VS+ELR+PLT+I G LL+ G L+ + V +++ L+ L Sbjct: 240 RIERLKNEFVSIVSHELRTPLTSIRGSLGLLEGGVAGELDIRIKGLVRIALSNTERLIRL 299 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VNDILDL ++ G ++L + L + I+ E+ + + V D Sbjct: 300 VNDILDLDKIETGKLELRSEVLDPIRLTEDAIAEISGYATESGVSL-VREFESACDVRGD 358 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 R RLLQ+ +LSNA+ FS G TV ++ G FSV + G I ED +F +F Sbjct: 359 RDRLLQVLINLLSNAIKFSKPGDTVTVEIEEISPGTVRFSVCDEGPGIAEDQMPKLFRKF 418 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R G GLGL+I ++ I+ HGG + + S Sbjct: 419 SQLDESATRSAGGSGLGLAISKAIIDAHGGGIGVES 454 >gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 808 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 16/238 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L + E AD +K++F+ ++S+E+R+PL I+GF+ LL + Sbjct: 567 DITELKETESKLIDAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLLVQEE---NP 623 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ + ++ +LL L++DILDL+ ++AG + +N L ++ + + K Sbjct: 624 EEREQYMAIVEENNELLLQLISDILDLSKMEAGTFDFVERELDVNLLCEDMVRVMKLKAK 683 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++V+ D L V +DR RL Q+ + ++NA+ F++ GS + D G F Sbjct: 684 PG---VEVVFDRHLPECVIASDRNRLNQVIANFINNAIKFTAIGSIRLGYDRIDAGHLRF 740 Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I ++ +F+RFV S H G GLGLSI +S + GG + + S Sbjct: 741 YVADTGIGIMQEKQAEIFDRFVKLNSFVH-----GTGLGLSISKSIVEQLGGTIGVES 793 >gi|300173927|ref|YP_003773093.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum LMG 18811] gi|299888306|emb|CBL92274.1| Histidine protein kinase, sensor protein [Leuconostoc gasicomitatum LMG 18811] Length = 361 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ + ++S++LR+PLT IIG+ L++ + ++++++Y+ S + LV D+ Sbjct: 136 KDEMITNISHDLRTPLTAIIGYLGLVEMNADTLSSAEKAKYIHTAYDRSNQMKVLVEDLF 195 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 + A LN ST+ L DL ++ S + E +I + I++ ++ AD +L Sbjct: 196 AFSQTQAHDAVLNISTLSLGDLFAQLIASYEIEAQEKHIELTQITNPEIIMLEADSDKLA 255 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 ++ +++NAM + + + + L A D V N+G IP +F RF V ++ Sbjct: 256 RVLMNLITNAMKYGKRETFIKLTAQVKKTDVEIRVINDGVKIPNKDIVDIFGRFYRVESS 315 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + G GLGL+IV+ I H G VS SS DE +T+ IP K+ Sbjct: 316 RNSKTGGTGLGLAIVKGIIEQHQGSVSASSDDE-LTSFIVTIPLKQ 360 >gi|295134774|ref|YP_003585450.1| histidine kinase [Zunongwangia profunda SM-A87] gi|294982789|gb|ADF53254.1| histidine kinase [Zunongwangia profunda SM-A87] Length = 743 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 12/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQ 608 + E+ +++E LR +K+ F +VS+EL++PL+ II +LKT NS Sbjct: 243 QKEKLKAKQSEELRT---LKDQFFTNVSHELKTPLSLIITPLASILKTE-----NSSNRS 294 Query: 609 YVEYISASSTILLNLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ LL LVN +LD+ ++ G + +N LN LLN V Q I Sbjct: 295 KLTKIHQSAIELLQLVNQLLDVRKIETTGKLSVNSDCCQLNQLLNNVTQPFDELAQHKGI 354 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 R K IS + F+ D ++ +I S +LSNA F+ + V D V +N Sbjct: 355 RFKREISKEETLIFI-DNEKFKKIVSNLLSNAFKFTPQEGKVSFIGELDGEILKIQVTDN 413 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G I ++ +F R+ + G+ G G+GL +V+S++ L GG V+++S+ +T Sbjct: 414 GKGIAKEEVPKIFERYYRSNPEGENTGTGIGLHLVKSYLELLGGTVNVTSAPAKGSTFTV 473 Query: 787 RIP 789 RIP Sbjct: 474 RIP 476 >gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei Ss046] gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri VA-6] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1] gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|269215795|ref|ZP_06159649.1| putative sensor histidine kinase [Slackia exigua ATCC 700122] gi|269130745|gb|EEZ61821.1| putative sensor histidine kinase [Slackia exigua ATCC 700122] Length = 650 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN F VS+ELR+PLT+++ + LK S+ + + V I S+ +LLNLVN+IL Sbjct: 412 KNEFFAIVSHELRTPLTSVMAYARRLKNSE--GICERDLDSVIQIETSANVLLNLVNNIL 469 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 L+ +AG L I +LL V++++ NI + +D + +AD +++ Sbjct: 470 TLSKAEAGKNTLELGPIDFVELLKFVEKTLRPLAANKNIELVSHADANVPIAMADWEKMR 529 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSN 745 ++ + NA+ ++ +G +V + A D + + V +NG I P+D S+F + Sbjct: 530 RVIDNLADNAIKYTHEGGSVDVHAWLDENENEIVIDVVDNGIGIDPKDQ-DSIFEAY-EQ 587 Query: 746 AHR----GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 A R RG GLGL++V+ + LH G VS+ S+ + +T RIP+ Sbjct: 588 ARRMPVSHHIRGTGLGLAVVKELVRLHEGSVSVQSTPKQGSTFTVRIPT 636 >gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp. 4_1_40B] Length = 778 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|154251517|ref|YP_001412341.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155467|gb|ABS62684.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 509 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627 K+ F+ ++S+ELR+PL IIGF++++ + G +Y I+ S LL L+ND+ Sbjct: 271 KSHFLANMSHELRTPLNAIIGFSEVMASEIFGKHGVPTYKEYANDINRSGQHLLGLINDV 330 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQR 686 LDL+ ++AG ++ + + L + ++ + + + I + +DG L D + Sbjct: 331 LDLSRIEAGRFQITEEEVDIAHLAEDCRRILEIRAQAQRVSITEDFADG-LPIVYGDARA 389 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 L Q + +L+NA+ FS S V + A + +G+ F V +NG I E V + F Sbjct: 390 LRQTWINLLTNAIKFSPPDSEVKMFARMEASGEMRFGVHDNGPGIAESEIDKVLHAFTQG 449 Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 A + +G GLGLSIV+ + +HGG + S T C +P + Sbjct: 450 ASGLAQPGKGSGLGLSIVKGLLAVHGGRFELKSQLGAGTQAECTLPPQR 498 >gi|2353767|gb|AAB94870.1| DMSO/TMAO-sensor kinase [Rhodobacter sphaeroides] Length = 815 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 134/245 (54%), Gaps = 18/245 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF +VT++ RA E+ EAL +A K F+ +S+E+R+P+ +I G T+LLK S+ Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S+ YV+ I S+ +L ++V+D+LD A +++G+++L ++ +L++V + + Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQ-RLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + +RI VI L + Q L QI + SNA+ F+ +G TV++ A R Sbjct: 402 QPLVRRKPQLRI-VIERTDLPAGPGKMQASLRQILINLTSNAVKFTPEG-TVVIGAERLA 459 Query: 717 GD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 G F F+V + G I + + +F ++ + RR G GLGL+I GG + Sbjct: 460 GGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRL 519 Query: 773 SISSS 777 + S+ Sbjct: 520 DVRST 524 >gi|28209959|ref|NP_780903.1| sensory transduction histidine kinase [Clostridium tetani E88] gi|28202394|gb|AAO34840.1| sensory transduction histidine kinase [Clostridium tetani E88] Length = 468 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 4/243 (1%) Query: 541 TFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 FVN D + + E+L K +E + SF+ +VS+E+RSP+T+I GF + + Sbjct: 219 VFVNSEDEIGDLANSFNAMAESLEKIEENRRSFISNVSHEIRSPITSIKGFISGILDGVI 278 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 S KQ+ Y+ + L LVND+LDL+ ++AG +KL + +N+++ Sbjct: 279 PS--EKQNYYLALAYDETQRLTRLVNDLLDLSAIEAGQLKLRIEEVNINEIIRLTVIKFK 336 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + N+ + + V D+ RL Q+ ++ NA+ ++ + V ++ Sbjct: 337 PLIDRKNLDVDICLQEDDLYVVGDKDRLFQVMINLIDNAIKYTVENGKVEVRTKLKGNKV 396 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 S+ N+G IPE+ K+V++RF + R + GLGLSIV S + G + + + D Sbjct: 397 YVSIYNSGKHIPEEDIKNVWSRFYKVDKSRTSKVSTGLGLSIVRSILTQLGEDIWVKNVD 456 Query: 779 EGV 781 GV Sbjct: 457 AGV 459 >gi|298249868|ref|ZP_06973672.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547872|gb|EFH81739.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 5/238 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ N A ++ ++ K+ F+ S+EL++PLT + T L + + + + + Sbjct: 613 AIVLDNSARKELEQRKDDFISMASHELKTPLTALKMQTQLARKRLERQSPHEAATVLSKV 672 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 L L+ ++LD++ + AG ++ T+ L+ LL+EV ++ + I ++ + Sbjct: 673 ERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTMQHAHPSHRILVRGVV 732 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 S +ADR RL Q+F+ +LSNA+ +S TV + + V ++G IP + Sbjct: 733 QA---SLLADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEDAVTIRVHDHGLGIPRE 789 Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF A Q+ G+G+GL IV I HGG +++ S +T +P Sbjct: 790 QRDKIFDRFYRVAGPKQKAIPGLGMGLYIVAEIIKGHGGTITVDSKVGKGSTFTVTLP 847 >gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 510 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 25/255 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ ++ K FV +S++L+SP+T ++G DL++ +KLG + Q +Y+ S ++ Sbjct: 250 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTGDQREYLNAAIESCEEMV 309 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++ +L + +AG MKL + L+N T IR+ +L + Sbjct: 310 EMIDTLLGIHKFEAGKMKLYFKDEDPAALVNRSVTKFQTMARRGGIRLFTTLPSELPAIS 369 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------------ARDN---------GDF 719 ADR +I +LSNA+ F+ +G + + A +N G+F Sbjct: 370 ADRSSFNRIMGNLLSNAVKFTPEGGEIEVSADLVQEPSAVTGAVPEENYAPQQLPREGEF 429 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V+++G IP++ S+F+RFV N +G+ RG GLGL+ ++ H G + S Sbjct: 430 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHNGFIWAES 489 Query: 777 SDEGVTTINCRIPSK 791 + +P++ Sbjct: 490 EPGAGSVFTLLLPAQ 504 >gi|154500841|ref|ZP_02038879.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC 29799] gi|150270341|gb|EDM97667.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC 29799] Length = 881 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 127/223 (56%), Gaps = 8/223 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615 E L K ++++ + ++ +S++LR+PLT+I G ++LL L +K+ Y + I Sbjct: 641 EAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNASNLLSNGALFDTKTKEQMYTD-IYD 699 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L+NLV ++L ++ ++ G M L+ ST ++++++ E + I K E + ++ D Sbjct: 700 DAMWLINLVENLLSVSRLEEGKMNLHMSTELVDEVVAEALRHINRKSVEYRLNVQNSEDY 759 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDM 734 L D + ++Q+ I+ NA+ ++ GS + + R G FI+ S+ +NG IP+ Sbjct: 760 VLAQI--DAKLIIQVLINIVDNAIKYTPPGSQIDIGWKR-QGRFIYISIGDNGPGIPDQA 816 Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775 +F+ F S ++R RR +GLGL++ +S +N HGG ++++ Sbjct: 817 KPHIFDMFYSASNRIADSRRSMGLGLALCKSIVNAHGGEITVA 859 >gi|330950735|gb|EGH50995.1| PAS protein [Pseudomonas syringae Cit 7] Length = 387 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K+ F+ +S+E+R+P+ IIG +L L Sbjct: 84 WIDITERKQLEQQLQEAMHLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQAL-R 142 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L + V + + + Sbjct: 143 LGRIPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLEGLFDGVIELFSAQ 202 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718 E + +++ G+ G + D RL Q+ +L NA+ F+ +G+ V+ L D+ + Sbjct: 203 AREKGVELRLEFSGQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVTLDVTSDSPES 262 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 263 TRLRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVELMKGD 319 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 320 ISLQSEPGKGTLVTIDLP 337 >gi|299065362|emb|CBJ36531.1| Sensor protein [Ralstonia solanacearum CMR15] Length = 995 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 18/253 (7%) Query: 549 VRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V AERA L +A A K+ F+ +S+E+R+P+ ++G +LL ++L Sbjct: 353 VTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNGVLGLVELLLQTRL---ER 409 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q + V SS LL++++DILD A ++AG + + + L LL+ +A++ HE Sbjct: 410 EQQRMVTLAQESSRALLHVLDDILDYAKIEAGRLSIAPAPTDLRALLDSTVGLLASRAHE 469 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719 ++ ++V D + + V+ D RL Q+ S +LSNA+ F+ G S ++AA D Sbjct: 470 RSLAVRVDVDAAVPATVSVDGIRLRQVLSNLLSNAIKFTEHGSVRLSAACMEAAADTAHL 529 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 I V + G I + ++F FV HR G GLGL+I L GG + + Sbjct: 530 IIQVADTGIGIAPEAQATLFTPFVQADSTVTHR--HGGTGLGLAISRQLAQLMGGSLDMD 587 Query: 776 SSDEGVTTINCRI 788 S+ TT+ R+ Sbjct: 588 STPNVGTTLTLRL 600 >gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1829 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFA 1402 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1462 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA--------------- 713 V +S + D QRLLQ+ +LSNA+ F+ G+ ++++ A Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIREQLLEA 1522 Query: 714 -----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D G FSV + G I + +F F R+ G GLGLSI Sbjct: 1523 GSLRDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1582 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1583 LLGGEIHAASEPGRGSTFTLYLP 1605 >gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703] gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703] Length = 918 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 12/232 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT L Q Y++ I S+ LL Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LTPTQQDYLQTIERSANNLL 337 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L+EV +A HE + + + I F Sbjct: 338 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQF 397 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ I R +K+ G I E Sbjct: 398 IGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQEQHQVLLEIQIKDTGIGIAEIQQA 457 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 +F F RR G GLGL I + + GG +S S TT C Sbjct: 458 QLFQAFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWC 509 >gi|229196124|ref|ZP_04322875.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293] gi|228587358|gb|EEK45425.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293] Length = 273 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 26 TNVNRMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 84 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 85 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 144 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 ++ + D +L D ++++F ++SN++ + G ++++ ++ + + +KN Sbjct: 145 DMSFCMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKN 203 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I +S LH G +++ S+D Sbjct: 204 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDK 259 Query: 779 EGVTTI 784 E V TI Sbjct: 260 ETVFTI 265 >gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] Length = 2331 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL EA RK A + K+ F+ +VS++LR+P+ +IG T+LL Sbjct: 1788 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1847 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ +Q+ YVE I + LL L+NDILD + ++AG MK+ + L D + E Sbjct: 1848 KKT---NLDREQNGYVESIRVCADTLLTLINDILDFSKLEAGKMKVAAIPLNLRDTIMEA 1904 Query: 655 KQSIA-TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ T H I+ + + V D RL QIF +LSN+ F+ +GS + Sbjct: 1905 VRALCFTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVKAN 1964 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A D D V + G IP + +F F S A R G GLGLSI ++ I Sbjct: 1965 ASDEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 2023 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2024 EDVLGGKIWL-QSEEGVGT 2041 >gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] Length = 580 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 ++ ++++ FV +VS+EL++P+T+I GF++ L G+++ K++ +++ I S L Sbjct: 351 KQLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAIDDKEALTEFLSIILKESVRL 407 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ D+LDL+ ++ KLN ++L E++ + K E I++ V + Sbjct: 408 ETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYV 467 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +AD RL QIF +++NA+ ++ +G +V + A G + F V + G + + +F Sbjct: 468 MADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIPRIFE 527 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF + G GLGL+IV+ + H G +S+ S TT + S Sbjct: 528 RFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLKS 579 >gi|83950797|ref|ZP_00959530.1| hypothetical protein ISM_06845 [Roseovarius nubinhibens ISM] gi|83838696|gb|EAP77992.1| hypothetical protein ISM_06845 [Roseovarius nubinhibens ISM] Length = 499 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 25/276 (9%) Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 + +W D G ILW N + E + GE R +++ R Sbjct: 164 YPLWRLDLTGRILWRNAACDSRFEALSDMPLPGPGERRN---DQVSLR------------ 208 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN----DQLTHTYEILHNLTVAI 319 + L G + ++I + G A AI+ ++ T D + + +LTV + Sbjct: 209 ---NPLNMGED-CFEIHTIAQPDGFARYAIETTRVRTAEAARVDFIQTLTKTFAHLTVGL 264 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 A+FDQ R L N + +L + F+AT PS + + LR + +PE ++ W+ I Sbjct: 265 AVFDQRRQLVLFNPALTDLTRLPPEFMATRPSLNAFFDRLRDGHVMPEPRDYTDWRRQID 324 Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 + S+E +++TW LP+ T V +P G + FE+++ V ++ + + + Sbjct: 325 DMLSSAEDGLYQETWSLPSNVTYKVTGRPHPDGAVAFFFEDISADVQQSRRHQSEMSTRD 384 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 I+ L + V + PD RI L N AFR L +R Sbjct: 385 AMIEALDQAVMIVCPDDRISLCNSAFRQLVGIAPDR 420 >gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 849 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%) Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433 W++ + + + GQ L ++ G + + ++T Q+ L Sbjct: 153 WQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206 Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491 ID + +G +F R+ L N +R+++ L PG I + Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261 Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542 E+ G W A + +F + L G E D V+E+ P+ + Sbjct: 262 PEALGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ R + AL A A K++F+ ++S+E+R+P+ I+G DLL + L Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + E I +S LL ++NDILD + ++A + L+ L ++EV + K Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 I + + D L + FV D RL Q+ + ++ NA+ F++ G +I L+ A Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D +V++ G I + VF F RR G GLGL+I I L G V + Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549 Query: 776 S 776 S Sbjct: 550 S 550 >gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 599 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 12/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ AE AL E A+ K F+ ++S+E+R+PL I+G LL+ L Sbjct: 198 IDLTEQRAAEEALESAKEVAESANIAKTQFLANMSHEIRTPLNGILGMLRLLRDH---DL 254 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q++YV S LL ++ND+L L+ ++A + + + L L + V + ++ Sbjct: 255 PPEQAEYVTTAETSGRNLLAILNDVLSLSQIEANAVHVCQEGLNLPLLADAVLRVFKAQI 314 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----G 717 + + + D + AD+ +L QI ++ NA+ F+ GS I A D+ G Sbjct: 315 DNSGVELGFTIDPTIPHDLCADQGKLRQILFNLVGNALKFTRNGSVRIDITAADDRRHPG 374 Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 D IF+V++ G I +D SVF F R+ G GLGL IV ++L GG V Sbjct: 375 DIILIFAVEDTGIGIAQDQLVSVFAPFTQADGSYARKYGGAGLGLPIVSRLVSLLGGSVC 434 Query: 774 ISS 776 I S Sbjct: 435 IDS 437 >gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 785 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 142/270 (52%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + +L + ++T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL ++ ++ Y I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + L R + + VK+ G I + +F RFV Q G GLGLSI + Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 885 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 10/261 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + ++ + TD++ ++ L++ EA R A+ K++F+ H+S+E+R+P+ IIG T + Sbjct: 342 RQIMVLTDQTDTLMYQQTLSDALEAARGANAAKSNFLSHMSHEIRTPMNAIIGMTT-IAL 400 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 S+L + + I+ SS LL L+ND+LD++ ++ G + + + L L + Sbjct: 401 SRLDD-RGRLEDCLGKIAQSSRHLLGLINDVLDMSKIERGRLSIAHEPFNLRLSLQGIVN 459 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714 I ++ E +V +S+ D RL QI ILSNA+ F+ KG ++ L + Sbjct: 460 LIQPQIQEQGQNFEVSLSEVDEEELNGDGMRLNQILINILSNAVKFTPKGGSIRLDIRQL 519 Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 +N F F +++ G + E+ ++ F + A Q G GLG++I ++ ++L Sbjct: 520 HKNHNNVRFRFIIRDTGIGMSEEFISRLYMPFEQATAATASQFGGTGLGMAITKNLVSLL 579 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG +S+ S + T +P Sbjct: 580 GGMISVKSKEGKGTEFTVELP 600 >gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 957 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + A+ K++F+ ++S+E+R+P+ IIG T LL+ + ++Q + ++ Sbjct: 274 LAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGAEQ---LAKVA 330 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL ++ND+LDL+ +++G ++L I L++LL+ ++++ HE + + + +D Sbjct: 331 DAADHLLQIINDVLDLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHEKGLELVLDTD 390 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI---FSVKNNGSS 729 + D RL Q +L+NA+ F+ GS VIL+ + D D + FSV++ G Sbjct: 391 HLPRTLRGDPTRLSQALLNLLTNAIKFTDHGS-VILRGQKLQDGADGVHVRFSVQDTGIG 449 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + D +++F F RR G GLGL+I L GG S Sbjct: 450 VEADQVEALFLAFEQGDSSTTRRHGGTGLGLAITRHLAQLMGGESGADS 498 >gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 827 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT A A++ K+ F+ ++S+E+R+P+ +IG LL+ ++L +Q Y+ I Sbjct: 432 LTTARNAADAANQNKSEFLANMSHEIRNPMNGVIGMLQLLRFTEL---TDEQKDYLSAIE 488 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++NDILDL+ ++AG ++L S L +N+V ++ E ++++ D Sbjct: 489 TSADDLLAIINDILDLSKIEAGKIELEISRFSLRRCINDVLLMQTSRAFEKGVQVEARLD 548 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729 +L V D+ R+ Q+ +L NA+ F+ +G+ I L+ DN +V + G Sbjct: 549 EQLPLEVYGDQLRVKQVLLNLLGNAVKFTEEGTISIEARLLQKQDDNSIVQITVSDTGIG 608 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + ++ VF+ F+ RR G GLGL+I L GG +S ++S+EG Sbjct: 609 MSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAELMGGRIS-ATSEEG 660 >gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 2508 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 22/250 (8%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A+ A E ++ A+E K+ F+ +VS+ELR+PL +IG ++LLK S+ L+ Q Sbjct: 1931 KAKHAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLKDSE---LDKDQ 1987 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHE 664 + + I S+ +LL ++NDILD + ++A MKL +++ EV +++ + + Sbjct: 1988 QEMADNIKVSAELLLTVINDILDFSRMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQKT 2047 Query: 665 NNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DN 716 +K+I D L S + D RL Q+ ++SN++ F+ GS I AR D Sbjct: 2048 KQKNVKIIQDINLPSMLIFGDPIRLHQVLGNLISNSLKFTEDGSITI--GARVESETNDK 2105 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVS 773 +F V++ G IP+ +F F R+ G GLGLSI +S I + G + Sbjct: 2106 ATLLFRVQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGLGLSICKSLIETMMKGKIQ 2165 Query: 774 ISSSDEGVTT 783 + S EGV T Sbjct: 2166 LDSQ-EGVGT 2174 >gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1964 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 1234 QARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNVENNLTPKQVEY 1293 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S + LL L+NDILDLA +++G M + + L ++ +++ ++ H+ + Sbjct: 1294 AATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDRAFRQIAHDKGLDF 1353 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717 ++ D +L + D +RL Q+ +LSNA F++KG + G Sbjct: 1354 EINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAKGQVSLEVEPAYQGWSQDHEILNQA 1413 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + + FSV + G I + + +F F R+ G GLGLSI L GG ++ Sbjct: 1414 ELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLSISREIARLLGGEIT 1473 Query: 774 ISS 776 + S Sbjct: 1474 VIS 1476 >gi|217959392|ref|YP_002337940.1| sensor protein VanS [Bacillus cereus AH187] gi|217064047|gb|ACJ78297.1| sensor protein VanS [Bacillus cereus AH187] Length = 291 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 45 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 103 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + N+ Sbjct: 104 VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 163 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 164 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 222 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S +LH G +++ S+D+ T Sbjct: 223 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 278 Query: 785 NCRIP 789 ++P Sbjct: 279 TVKLP 283 >gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] Length = 1311 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ +IG + L S+L Y+E I+ SS ILL +++DILD + Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSEL---PEHARDYLEKINRSSLILLRIIDDILDFS 627 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690 ++AG M + + L+D+L +V IA + + + + S+ L + V D RL QI Sbjct: 628 KIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQI 687 Query: 691 FSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++ NA+ F+ G V+ +A D SV + G + ++ +F F Sbjct: 688 LLNLIGNALKFTEAGEIVVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFSQAD 747 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 RR G GLGL+I + + L GG +S+ S+ +T + I Sbjct: 748 GSTTRRFGGTGLGLAICKQLVELMGGTISVESTPGAGSTFSFTI 791 >gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1837 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 27/300 (9%) Query: 512 KSLQGTLELLSDS----VLEYSIIPLPNA-----QTMLTFVNVTDSVRAE---------- 552 + ++G LE + DS + +PL N + F++VT+ +AE Sbjct: 1393 EEVEGELEFVFDSGEVRYIYGKAVPLRNELGKVRGVIGAFLDVTERKQAEAEREQLLARE 1452 Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ E+ EA A+ IK+ F+ +S+ELRSPL I+G+ +LL+ K+ Q+ + Sbjct: 1453 RSAREEAEA---ANRIKDEFLAVLSHELRSPLNPILGWANLLQRQKVDDQVFHQA--LTT 1507 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + + + L++D+LD++ + G +KLN S++ L ++ +++ +I I+ Sbjct: 1508 IERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAIETVRLAAEAKSIEIRTH 1567 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D ++G + D RL QI +LSN + FS G V + + V++ G I Sbjct: 1568 LDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESVGNEAQIRVQDRGKGINP 1627 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 VF+ F R+ G+GLGL+IV +HGG V S G T ++P Sbjct: 1628 KFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTVQAESPGVGKGATFTVKLP 1687 >gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI] gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 621 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 21/252 (8%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD---------- 592 + +T+ + E AL + NE L + DE+K F+ VS+ELR+PLT+++GF Sbjct: 115 MEITERKKVEEALRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHI 174 Query: 593 ---LLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 ++ T + KQ + +E I + L L+ND+LD+A ++AG ++ + + Sbjct: 175 FPLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMA 234 Query: 649 DLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D++ + + + + K I +G L DR RL+Q+ ++SNA+ F+++GS Sbjct: 235 DVIERATAASSYLFEQKGLAFFKEIEEG-LPDLTGDRDRLIQVIINLISNAVKFTNEGSV 293 Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 AR GD I SV + G I + + +F +F + +G GLGL+I + Sbjct: 294 TC--RARMIGDEITVSVIDTGIGIAREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQI 351 Query: 765 INLHGGHVSISS 776 + HGG + + S Sbjct: 352 VEHHGGRIWVES 363 >gi|90412925|ref|ZP_01220924.1| PAS domain [Photobacterium profundum 3TCK] gi|90326104|gb|EAS42538.1| PAS domain [Photobacterium profundum 3TCK] Length = 625 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + AL KA IK F+ ++S+E+R+P+ ++GF L++ LG +Q V Y Sbjct: 236 KKLEARTLALNKALTIKGDFMANMSHEIRTPMNGVLGFIQCLESQPLGEEAKRQ---VGY 292 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ LL+++N+ILD + +++G + LNY+ I + +L+ SI + +I ++ Sbjct: 293 IKESAQSLLSIINEILDYSKLESGNVTLNYTPIAITELIKFSLMSIIYEAERKSIVLENN 352 Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNG 727 D KL S ++ D R+ QI + +L N++ F+ G +V L NG I F VK+ G Sbjct: 353 IDQKLASYYLGDECRIKQILTNLLGNSVKFTEHGKVTLSVTLINKTKNGTCIRFKVKDTG 412 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I D +F+ + R+ G GLGLSI S L G + + S Sbjct: 413 IGIDLDKQIIIFDSYTQADGSISRKYGGTGLGLSISNSLCKLMGSKLEVKS 463 >gi|15642366|ref|NP_231999.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588205|ref|ZP_01677949.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80] gi|153819138|ref|ZP_01971805.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457] gi|153822770|ref|ZP_01975437.1| sensor histidine kinase FexB [Vibrio cholerae B33] gi|227082493|ref|YP_002811044.1| sensor histidine kinase FexB [Vibrio cholerae M66-2] gi|229507565|ref|ZP_04397070.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX 330286] gi|229512239|ref|ZP_04401718.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae B33] gi|229519375|ref|ZP_04408818.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae RC9] gi|229607071|ref|YP_002877719.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae MJ-1236] gi|254849491|ref|ZP_05238841.1| sensor histidine kinase FexB [Vibrio cholerae MO10] gi|255746952|ref|ZP_05420897.1| aerobic respiration control sensor protein ArcB [Vibrio cholera CIRS 101] gi|262161504|ref|ZP_06030614.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae INDRE 91/1] gi|9656939|gb|AAF95512.1| sensor histidine kinase FexB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547547|gb|EAX57650.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80] gi|126510328|gb|EAZ72922.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457] gi|126519715|gb|EAZ76938.1| sensor histidine kinase FexB [Vibrio cholerae B33] gi|227010381|gb|ACP06593.1| sensor histidine kinase FexB [Vibrio cholerae M66-2] gi|229344064|gb|EEO09039.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae RC9] gi|229352204|gb|EEO17145.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae B33] gi|229355070|gb|EEO19991.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX 330286] gi|229369726|gb|ACQ60149.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae MJ-1236] gi|254845196|gb|EET23610.1| sensor histidine kinase FexB [Vibrio cholerae MO10] gi|255735354|gb|EET90754.1| aerobic respiration control sensor protein ArcB [Vibrio cholera CIRS 101] gi|262028815|gb|EEY47469.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae INDRE 91/1] Length = 785 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella dysenteriae CDC 74-1112] Length = 778 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1620 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 11/220 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A + K+ F+ ++S+E+R+P+ I+G + L L+T L KQ +Y+E + S+ LL Sbjct: 735 EATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTE----LTDKQRKYIEKVYRSAENLLG 790 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 ++NDILD + ++AG + + + L D+ + + K E + + G + + V Sbjct: 791 ILNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPTLVG 850 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D RL QI + +NA+ F+ +G V +++ FSVK+ G + E+ K + Sbjct: 851 DPLRLGQILINLGNNAVKFTPRGEVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQRKKL 910 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F F R+ G GLGL+I + L GG + + S Sbjct: 911 FQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLES 950 >gi|188589604|ref|YP_001921680.1| two-component sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188499885|gb|ACD53021.1| two-component sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 502 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%) Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535 P T++ +A N+ D + +DE +L TL LS + L N Sbjct: 204 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 248 Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A +TD + + L E E RK + ++ FV +VS+EL++P+ I G+ + LK Sbjct: 249 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 300 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + ++ Y+E I + S + LV ++L+L+ +++G +K + +N L++++ Sbjct: 301 DGIVSGDDA--LAYLETIISESQKMNTLVKNMLELSKLESGTIKPKLESFNINRLISKIL 358 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ K EN++++ S AD ++ Q+ + I++NA+ ++ + + + + Sbjct: 359 KNNHLKFEENDLKVNFNSSNPYSYVYADTFQMDQVITNIITNAIKYTPPHNLIDVSVNEE 418 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 N F S+KN G +IPE +F++F V + + + GLGLSIV++ + LH + Sbjct: 419 NDKFKISIKNMGINIPESEINKLFDKFYRVDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 478 Query: 774 ISSSDEGV 781 + + D GV Sbjct: 479 LKNIDNGV 486 >gi|116493099|ref|YP_804834.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] gi|116103249|gb|ABJ68392.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC 25745] Length = 482 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 128/243 (52%), Gaps = 10/243 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 +L E N+ +++ +E + +F+ ++E+R+PLT I G + L+ + + ++S V + Sbjct: 241 SLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGILEGLEYDAIPEDSKEES--VHLM 298 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-ENNIRIKVI 672 + L+ LVND LD + + LN I L + + +A K EN++ I + Sbjct: 299 QRETKRLIRLVNDNLDYERLRTNKISLNRHQINLKQATQRISKQLAKKAKLENDVIIIDM 358 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731 +D + AD RL+QI I+ N + F+ G T+ + A+D D + +NG + Sbjct: 359 ADDVM--VYADTDRLIQILFNIIQNGIQFTQNGKITIRAQNAKDGTDI--QISDNGIGMT 414 Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ K+++ R+ ++A R Q +G GLG++IV + +HGG +++ S+ E TT P Sbjct: 415 EEQIKNIWERYYKADASRIQTKGESGLGMAIVHELMQVHGGQITVESTPEKGTTFKLHFP 474 Query: 790 SKE 792 ++ Sbjct: 475 EQQ 477 >gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 773 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 12/227 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EA A+ K+ F+ ++S+E+R+P+ I+G T+L + L + + +Y+ + Sbjct: 378 LRSAKEAAEAANRAKSQFLANMSHEIRTPMNGILGMTEL---TLLMDMPPQAGEYLRLVL 434 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+++NDILDL+ +++G L+ L++ L ++A E + + D Sbjct: 435 QSGHALLDIINDILDLSKIESGHAVLDNKPFRLHECLGSTFNALAITAREKGLSLYHCID 494 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNG 727 + V D+ RL Q+ I+ NA+ F+ KG + A + +F V ++G Sbjct: 495 SHVPEHIVGDQGRLRQVLINIVGNAIKFTPKGGVRVTVGRDGQPAPPGSARLLFQVADDG 554 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 IP+D VF+ F R G GLGLSI +S + + GG + Sbjct: 555 IGIPKDGLGEVFHAFSQIGLSSHTRFGGTGLGLSISKSLVAMMGGRI 601 >gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 803 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL+ +IG++++L ++ + I +S+ LL L+ND+L Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG + L T + L+ +V + + + + R ++ +G LG+ D+ +L Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 407 Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 Q ++ NA FS G ++ ++ R+ G D++ FSV + G + ++ +F RF Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+I +F+ GG + + S+ T R+P Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 2314 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 20/250 (8%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S LN++Q ++V I AS+ Sbjct: 1613 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNAEQLEHVNIIKASTDS 1669 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678 LLNL+NDILDL+ V+AG++KL+ + L LL EV + + + ++ +G Sbjct: 1670 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPA 1729 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVKNNGS 728 D+ R+ Q+ ++ NA+ F+ +G I ++N + F V + G Sbjct: 1730 EVKGDKFRIRQVLLNVVGNAIKFTERGEIFIRCKVQPPDRSPPLKENETMVRFEVIDTGQ 1789 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT--- 782 + K +F RF + + Q G GLGL+I F+ LHGG + S+ +G T Sbjct: 1790 GFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFF 1849 Query: 783 TINCRIPSKE 792 TI +P+ E Sbjct: 1850 TIKFGLPTAE 1859 >gi|182626605|ref|ZP_02954351.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] gi|177908085|gb|EDT70658.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] Length = 821 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I ++ + D ++ +I +LSNA+ F+ G + + D Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 779 GSEFSILLPN 788 >gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 586 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 75 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293 >gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 480 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 35/345 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +S+ V F G+I L+NP +SL WK E + E D + Sbjct: 138 MSDAVITFDRSGQIILTNPPAQSLLDIWKKLE-------------------WQERD-LEE 177 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F A S + SL T+ + V +Y + + + + +++R A+ Sbjct: 178 FGA---SVPEPLLSLFHTVMDRGEDVGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDI 234 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 K +++++ FV +VS+E+R+PL+ + G+++ L GS + + V+ I S Sbjct: 235 TEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLR 293 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLG 678 + LV D+LDLA ++AG ++ + +N+L+ V + + E + + G +L Sbjct: 294 MGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQRLL 353 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 AD RL Q+ + +L NA + G V + A R G+ +K+ G I + Sbjct: 354 LPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGIASED 413 Query: 735 CKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF RG+ +G GLGL+IV++ + HGG VS +S Sbjct: 414 LPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAAS 458 >gi|218291333|ref|ZP_03495293.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218238779|gb|EED05993.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 429 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 25/244 (10%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------- 612 + +R+A + + FV S+ELR+PL I S LG + Q VE Sbjct: 177 QPIRRAFQRQLEFVADASHELRTPLAVI--------QSNLGIVMEHTDQTVEENLEWLNN 228 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L LV D+L LA D+ M + + LN+LL+ + T I + V Sbjct: 229 AHGEARRLAKLVQDLLTLARSDSERMPVERRPVALNELLDRIHDLYETIAEMRGIELSVR 288 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ++ L + DR RL Q+ ++ NA+ F+ G V + A R+ I SV++ G I + Sbjct: 289 AEEPL-VVLGDRDRLHQLLVILIDNAIKFTDAGGKVEIAATRNRNQAILSVRDTGIGIAK 347 Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTIN 785 + + VF+RF + + G+ +G GLGLSI + + HGG +SI+S EG+ TT+ Sbjct: 348 EHLERVFDRFYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIAS--EGIGKGTTVR 405 Query: 786 CRIP 789 +P Sbjct: 406 VELP 409 >gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] Length = 1385 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 128/235 (54%), Gaps = 18/235 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +T + EA A++ K+ F+ ++S+E+R+PL +IGFT+LL+ ++ L+ +Q YV+ I Sbjct: 391 VTYQKEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTE---LDEEQQDYVDTIE 447 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKMHENNIRIKV 671 SS LL ++N+ILD++ +++ K+ I+ N D + V+ +A K E NI I + Sbjct: 448 QSSENLLTIINNILDVSKIESN--KVELEDILFNPIQDFESAVEIYVA-KATEKNIDILL 504 Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724 D L D ++ ++ ++SNA+ F+ +G + ++ R D FSV+ Sbjct: 505 YIDPTLIHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVE 564 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + G I ED +VFN F R+ G GLGL+I ++ + GG + + S+ Sbjct: 565 DTGVGIAEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKST 619 >gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 972 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 3/251 (1%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF +VRA ++ AL + D K +F +VS+E R+PLT ++G + +S Sbjct: 303 TFTTAVSNVRAYEQEQQRAAALAEIDRAKTAFFSNVSHEFRTPLTLMLGPLEDSLSSHSE 362 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L Q + + I ++ LL LVN +LD + ++AG +K Y L L +V + + Sbjct: 363 PLTPSQRERQQLIHRNALRLLKLVNTLLDFSRLEAGRVKATYRATNLPKLTADVASAFRS 422 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 M + + +V L D +I ++SNA F+ G V +K + G Sbjct: 423 AMEKAGLNYRVTVPDSLEPVYVDHDMWEKIVLNLISNAFKFTFHGE-VEVKLTQLEGRVR 481 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 +V++ G+ +PE +F RF V G G+GL+++ + +HGG + + S + Sbjct: 482 LTVRDTGTGVPEAELPRLFERFHRVETTQGRTFEGTGIGLALIMELVKMHGGILGVQSVE 541 Query: 779 EGVTTINCRIP 789 + + +P Sbjct: 542 NRGSAFHVELP 552 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 11/282 (3%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 R + +E L +Y + P +A+ +L + ++VR R +E+ R+ E++ Sbjct: 696 RAGEEARIEGLQAGANDYLVKPF-SARELL--ARIENAVRLARERSERERLARERGELEQ 752 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 + VS++LR+P++ I+ T L ++G+L + ++ V I AS+ + ++ D+LD Sbjct: 753 QLIGIVSHDLRNPISAILMSTSFL--FRMGTLEERAAKVVTRIQASAERAMRMIRDLLDF 810 Query: 631 ATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689 G +++ L + + + E + + + + G + D RL Q Sbjct: 811 TQARLGGGLRIERRPAELQHIAWLAVEEVKLAHPERKVLFEAVGV-QTGEW--DDDRLFQ 867 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 + + +++NA+ +S ++V ++ + V N G I +++ +F H G Sbjct: 868 LLTNLITNAVKYSPSSTSVTVRLTGTQTEAQIDVHNEGEPISQELQARLFMPMQQGGHGG 927 Query: 750 QRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R G +GLGL IV + HGG +++ S+ E TT R+P Sbjct: 928 DRAGRSIGLGLYIVSQIVRAHGGAINLLSTPEVGTTFTVRLP 969 >gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 586 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 75 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293 >gi|293369521|ref|ZP_06616100.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635406|gb|EFF53919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1197 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 634 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 693 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG+M ++ + + + LL Sbjct: 694 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGVMPIHVAQVNVEGLLQ 751 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G +++L Sbjct: 752 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSILLSL 811 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 812 WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 869 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 870 TVASEPAQYTEFKVTLPA 887 >gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6] gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6] Length = 551 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 25/257 (9%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A +++ F +VTD V A A K+ FV VS+E R+PLT+I+G+ ++L Sbjct: 316 AGSVIAFSDVTDLVNALAA--------------KDDFVSSVSHEFRTPLTSILGYVEILL 361 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + Q + +E I +S LL LV+D+L G + ++ T+ + +L+ Sbjct: 362 ADEP---EESQEEMLEIIRRNSERLLTLVSDLL---ASRNGQLIVSPHTVDVAELVRTSV 415 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S K + + + + +L + V D R+ Q+ ++SNA+ +S G V++ ARD Sbjct: 416 SSALPKATASGVVLAAETPDQLEAHV-DGARISQVLDNLVSNAIKYSPDGGNVLVSLARD 474 Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +G V + G + PED VF +F SN R GVGLGL I ++ + HGG + Sbjct: 475 DGHLECRVTDTGMGMTPED-ASEVFAKFFRTSNVRRTAIPGVGLGLPISKAIVEAHGGTI 533 Query: 773 SISSSDEGVTTINCRIP 789 S+ S+ TT R+P Sbjct: 534 SVDSTLGQGTTFTFRVP 550 >gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 736 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 9/234 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS 607 +R + EK +A A +IK+ F+ ++S+E+R+P+ I+G T L L+T LN KQ Sbjct: 269 IRTKELEIEKKKA-EDATKIKSEFLANMSHEIRTPMNGILGMTHLALETD----LNDKQR 323 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y++ I S+ LL ++NDILD + ++AG + + + +++++ V + K E N+ Sbjct: 324 NYIQKIDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNL 383 Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 ++ V D + F D RL QI +L NA+ F+ G I F F V + Sbjct: 384 KLTVNYDKNISKYFYGDSLRLRQILINLLGNAVKFTDSGEVSISLKKISKDRFRFEVSDT 443 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 G + ++ +F F R+ G GLGLSI + + L GG + + S + Sbjct: 444 GIGLSQEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVESKE 497 >gi|24214922|ref|NP_712403.1| two component system sensor histidine kinase\response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657575|ref|YP_001661.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195953|gb|AAN49421.1| sensor histidine kinase and response regulator of a two component complex [Leptospira interrogans serovar Lai str. 56601] gi|45600814|gb|AAS70298.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 832 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 7/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + ER + E + L D++K+ F +VS+ELR+PLT I+G T L + + S Q + Sbjct: 190 QREREIQEVYQRLFNMDQLKSQFFANVSHELRTPLTLILGPTRALLKDQ--GITSTQRTF 247 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I +S LL VND+LDL+ +D+G M L YS L++++ + + E NI Sbjct: 248 LETIERNSYTLLKHVNDLLDLSKLDSGKMTLKYSNANLSEVIRYIASHFDSITKERNIDF 307 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ D ++ +I ++SNA F ++ + + + +NG Sbjct: 308 VLMIPENF-PIQMDVSKVERIILNLISNAFKFVPDSGKILCELKTEGTMASIYIADNGPG 366 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP + +F +F G R G GLGL+IV+ F++LH G + + S G Sbjct: 367 IPIHLRDQIFEKF-RQIEEGDSRSFGGTGLGLAIVKEFVDLHLGSIGVFDSFLGGALFKV 425 Query: 787 RIP 789 +IP Sbjct: 426 QIP 428 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 100/215 (46%), Gaps = 7/215 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L A+ SF VS++LR+P+ I GF ++ ++ + + ++ + + Sbjct: 598 ETLENANADMESFSYSVSHDLRAPILVIEGFLQIILEDFSEKMDPEALRSLKIVHKNVVY 657 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L+ D+L V + L I ++ ++ +V ++ + N +V +L + Sbjct: 658 MNHLIQDLLSFHKVSK--IDLPIRLIEMDKMVQDVIATVLQNYPKKNYLFQV---DELPN 712 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPEDMCKS 737 +A+ L Q++ ++SNA+ +SS T +K + D + +++NG + Sbjct: 713 ALANGAALKQVWMNLISNAVKYSSTRETPFIKIGFEEMDGFNNYFIEDNGVGFNKAYSNK 772 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +F F + + G G+GL+IV + HGG V Sbjct: 773 LFKVFQRLHTQEEFEGTGVGLAIVSKIVQRHGGQV 807 >gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus] Length = 682 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 16/231 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S LN++Q ++V I AS+ Sbjct: 76 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNTEQLEHVNIIKASTDS 132 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678 LLNL+NDILDL+ V+AG++KL+ + L LL EV + + + ++ +G Sbjct: 133 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPA 192 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVKNNGS 728 D+ R+ Q+ ++ NA+ F+ G I + ++N I F V + G Sbjct: 193 EVKGDKFRIRQVLLNVVGNAIKFTEHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQ 252 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + K +F RF + + Q G GLGL+I F+ LHGG + S+ Sbjct: 253 GFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSA 303 >gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 1111 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ AD++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 427 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 486 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 487 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 546 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP Sbjct: 547 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 605 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664 >gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1183 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 8/213 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG + L ++L N KQ Y+E I + LLN++NDIL Sbjct: 487 KSEFLANMSHEIRTPMNGIIGMSHLALQTRL---NDKQKNYIEKIDICAKNLLNILNDIL 543 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687 D + ++AG + L L + + + I ++E N+ + V +G +F D RL Sbjct: 544 DFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLELVVSYGTDVGKNFYGDNLRL 603 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI + +LSNA+ F++ G + D + F +K+ G + E+ +F F S A Sbjct: 604 AQILTNLLSNAIKFTNDGQIGVYITKIDINRYQFEIKDTGIGLTEEQQTKLFQSF-SQAD 662 Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSS 777 G R G GLGL+I + I L G + + S Sbjct: 663 GGTTRKYGGTGLGLTISKQLIELMNGKIWVESQ 695 >gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1175 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 12/239 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ ++ +E+R+P+T ++G ++LL S L + +Q Y + I + Sbjct: 799 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPL---DPQQRGYTQSIRHAG 855 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+LVND LDLA +++G ++L L+ LL ++ + + +R + + Sbjct: 856 EHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTLDNQLPP 915 Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733 G D R+ QI +LSNA+ F+S+G+ + AR +G+ F V++ G I ++ Sbjct: 916 GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 973 Query: 734 MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF ++ R Q G GLGL+I G + + S T +P Sbjct: 974 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1032 >gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens DM4] Length = 803 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL+ +IG++++L ++ + I +S+ LL L+ND+L Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG + L T + L+ +V + + + + R ++ +G LG+ D+ +L Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 407 Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 Q ++ NA FS G ++ ++ R+ G D++ FSV + G + ++ +F RF Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+I +F+ GG + + S+ T R+P Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10] gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10] Length = 553 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 17/239 (7%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S AE+ + EAL A + K+ F+ +S+E+R+PL ++G T LL+ + +L+++Q+ Sbjct: 141 SALAEQLGRARLEAL-AASKAKSDFLATMSHEIRTPLNGVLGVTQLLQAT---TLDAEQA 196 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++V I S ILL L+NDILDL+ ++AG M+L + + L+ + + + + E I Sbjct: 197 EFVRVIDDSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGI 256 Query: 668 RIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 + +D + + D R+ Q+ ++SN + F+ GS + L R Sbjct: 257 AFSIEADCDEDAQYEGDPVRIKQLLFNLISNGIKFTQSGSVAVRMQFLPLGRRRNVMRVE 316 Query: 723 VKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP+ + +F+ F +N G G GLGL+I L GG V ++S Sbjct: 317 VVDTGCGIPDTALRELFSAFKQADVATNRLHG---GTGLGLAICRRLAELMGGSVDVTS 372 >gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 1128 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ AD++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 444 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681 >gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 528 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 24/279 (8%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADE------ 567 LS ++Y PL T + +R +R + +KN+ L KA E Sbjct: 97 LSTGAVDYLYKPLDPYVTAAKVDSFIQFIRNQREVKKKNKELEAYQKELIKAKELAETGK 156 Query: 568 -IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 IK++F+ ++S+E+R+P+ IIG LLK ++L +Q + V + SS LL ++ND Sbjct: 157 RIKDNFLANMSHEIRTPINGIIGIAQLLKKTEL---TDEQREMVNLLEISSNSLLGVIND 213 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685 +LDL+ +++G K+N + + + V + E + +K+ D +L + AD Sbjct: 214 VLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEKKLDLKLALDSELPKMILADSL 273 Query: 686 RLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 RL QI ++ NA+ F+ +GS IL +N FSV + G I ++ +F Sbjct: 274 RLNQILMNLIGNAIKFTHQGSVTLKVEILNRKGNNLQLRFSVADTGIGIAKENIDKIFET 333 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F + + G GLGLSIV++ L GG + + S + Sbjct: 334 FEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEE 372 >gi|197121582|ref|YP_002133533.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196171431|gb|ACG72404.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 601 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E A+R D++ + VS++L++PL I + LL S + ++ E I S Sbjct: 377 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSSALLLRS---GAAPRLRRHAETIQRS 429 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + L+ ++LDL++++AG + + L+ ++ E ++ E I + + G Sbjct: 430 AARMDRLIRELLDLSSIEAGRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGA 489 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 DR+R+LQ+ S ++ NA+ F+ +G V ++A + V+++G I + Sbjct: 490 REPVPCDRERILQVLSNLVGNALQFTPRGGHVTVRATLAPAEARVEVRDDGPGIAPAQLR 549 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF+R+ + G RRG GLGLSI + + HGG + + S +T +P + Sbjct: 550 RVFDRYWKS---GSRRGSGLGLSIAKGLVEAHGGRIEVESRLGAGSTFRFTLPRR 601 >gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 615 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 122/231 (52%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + +L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + + +D G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNAGGNIFVN-VKDCGENVYVHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V+I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGQGTEFIIKLPA 585 >gi|153825882|ref|ZP_01978549.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2] gi|149740380|gb|EDM54511.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2] Length = 785 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|228921981|ref|ZP_04085292.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837589|gb|EEM82919.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 448 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ + +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447 >gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 546 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 553 RALTE--KNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 R +TE K EA+++A E+K F S+E R+PL+ I+ +L +S+ SL+ Sbjct: 286 RDITERQKMEAMQRALEQEQELSELKLRFFSMASHEFRTPLSVILMAAQILGSSESQSLD 345 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +KQ + +E I S+ L ++ DILD+A ++A + N + + + + + + T H Sbjct: 346 NKQQRNIERIHTSAQYLKKMLADILDIARLEAQKREFNPRPVCVKTMCDRILDTQQTS-H 404 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 RI+ G D I + +L+NA+ +S+ V +K ++ + Sbjct: 405 GGIPRIRCAYTGLSAEIALDPDLFQSILNNLLANALKYSAPEQLVQVKLTQELDQIELMI 464 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G IP+ +F F + G+ G GLGL+IV+ ++LHGGH+S S G TT Sbjct: 465 IDQGIGIPKASQSQLFEAFHRGDNVGEIEGSGLGLAIVKKCVDLHGGHLSFVSEASG-TT 523 Query: 784 INCRIP 789 R+P Sbjct: 524 FTVRLP 529 >gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1154 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +RAL E +A+E K+ ++ +S+ELR+PL +IIG+ LL S+ + S ++ Sbjct: 672 DRALQNAKEQAERANEAKSRYLTGISHELRTPLQSIIGYAQLL--SEKANTPSGHQNGLD 729 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S L +L+ +LD++ ++AG L +T+ L L++++ A + + I+++ Sbjct: 730 IIHRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPKLIDQLNSMFAMQARDKGIQLQS 789 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 L V D +RL QI +LSNA+ ++ KGS V+ + N F +++ G I Sbjct: 790 KILAPLPQHVVTDEKRLRQILINLLSNAVKYTPKGS-VLFEVNYRNQVAEFVIRDTGVGI 848 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 E K +F+ F V + G G GLGL+IV+ + GG + S Sbjct: 849 KEGHLKRIFDPFERVRDVSTGNLPGTGLGLTIVKLLTEIMGGDIQAHS 896 >gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae] Length = 1268 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ++ E L + E A++ K+ F+ ++S+E+R+P+ ++G L+ S +L+ Sbjct: 512 DLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+E +++ LL L+NDILD + ++AG ++L+ L DLL ++ ++ Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 628 Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 + + + V +D + D R+ Q+ ++ NA+ F+ KG IL + R Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + FS+K+ G I + ++F+ F RR G GLGL+I + +NL GG + Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745 Query: 774 ISS 776 + S Sbjct: 746 VES 748 >gi|22095656|sp|O81122|ETR1_MALDO RecName: Full=Ethylene receptor gi|3411051|gb|AAC31123.1| ethylene receptor [Malus x domestica] Length = 741 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 ++Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TAEQRLMVETILRSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + ++ + + +D + + + D +RL+Q ++ NA+ FS +GS I + Sbjct: 432 PVASIKRLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ K +F +F R G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQALATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574 >gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 586 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 75 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293 >gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 570 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++ K+ F+ ++S+E+R+PL ++G T +L SKL + +Q + VE I S LL+ +N Sbjct: 181 NQAKSQFLANMSHEIRTPLNGVLGMTAVLALSKL---DERQRKAVEVIRMSGDHLLSTLN 237 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---VA 682 DILDLA +DAG M + VL D+ +++ A + + + + + + + V Sbjct: 238 DILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVSAHSLRVG 297 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740 D RL QI ++SNA+ F+ KG V L A+D + I V++ G + D + VF Sbjct: 298 DPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVDQLERVFM 356 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F R G GLGLSIV+ + + G + + S + T +P Sbjct: 357 PFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLP 407 >gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1111 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ AD++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 427 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 486 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + IRI Sbjct: 487 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 546 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ ++S+G VI D+ + V + G IP Sbjct: 547 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 605 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664 >gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] Length = 1468 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 13/250 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L ++ + L A + K+ F+ ++S+ELR+PL +++ LL + +L +KQ +Y Sbjct: 898 QARQELEDRAKQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPARNLTAKQVEY 957 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ T LL L+NDILDL+ ++AG M ++ ++ L LL+ V+ + E +R Sbjct: 958 ANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDYVEATFRPLTTEKGLRF 1017 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR-------DNGDF 719 V ++ G + D QRL Q+ +LSNA+ F+ GS I +A R Sbjct: 1018 DVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTETGSVQLRIERAGRMELLGVPGQETL 1077 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISS 776 F V + G I E+ +F+ F R+ G GLGLSI L G + ++S+ Sbjct: 1078 AFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSISREIAALFNGEIRAVSA 1137 Query: 777 SDEGVTTINC 786 EG T C Sbjct: 1138 LGEGSTFSLC 1147 >gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 723 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 24/292 (8%) Query: 519 ELLSDSVLEYSIIPLPNAQ------------TMLTF-VNVTDSVRAERALTEKNEALRKA 565 E L D+ E ++I L N Q M++ +++T +V ER L E + A Sbjct: 153 ERLQDTAPEPTVIHLWNGQHIKLIDQRSPSGDMVSLGLDITATVEYERQLQEAHSIAESA 212 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + K++F+ ++S+E+R+P+ ++G D+L+ + L Q YV+ I S LL ++N Sbjct: 213 NRAKSAFLANMSHEIRTPMNGVVGMADVLRDT---DLTEDQRLYVDTIKNSGEALLVIIN 269 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 D+LD + ++A + L+ L + EV + E + + + D + + V D Sbjct: 270 DVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMALDYDLFMPTTLVGDP 329 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFI--FSVKNNGSSIPEDMCKSVF 739 R+ Q+ + +L NA+ F+S G ++ ++ G ++++ G I DM +F Sbjct: 330 GRIRQVLTNLLGNAVKFTSDGHVLVRVTGVPDKETGKVQVNIAIEDTGIGIAPDMVDHIF 389 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V N + G GLGL+I + I + G + ++S ++ + ++P Sbjct: 390 GEFNQVENERNRKFDGTGLGLAISQRLIQMMEGDIWVTSEEQAGSCFGFKLP 441 >gi|298500269|ref|ZP_07010074.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757] gi|297540962|gb|EFH77016.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757] Length = 785 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1626 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 9/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD A AL E A K+ F+ ++S+E+R+P+ I+GF L+K L Sbjct: 867 DITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRTPMNAILGFAHLIKRD---PLT 923 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q +E +SA++ LLN++NDILD++ ++A M+L L +++ + +A + Sbjct: 924 PSQLAQLEKLSAATHHLLNIINDILDISKIEANKMELGVEDFDLARIIDRIAALVADSVL 983 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI 720 ++ + V D D RL QI ++SNA+ F+ +G+ TV + AR++ + Sbjct: 984 AKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKFTEQGAVDITVRVVDAREDRPVL 1043 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F +++ G + + + F F RR G GLGL+I + L GG + + S Sbjct: 1044 RFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTGLGLTISRQLVELMGGRMGVES 1102 >gi|298245291|ref|ZP_06969097.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552772|gb|EFH86637.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 9/237 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQSQYVEYISAS 616 N A ++ ++ K+ F+ S+ELR+PLT + L++ K G LN + + + Sbjct: 618 NSARKELEQRKDGFISMASHELRNPLTALKMQAQLVRKRLEKQG-LNGAAAA-LSGVEGP 675 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L L+ ++LD++ + AG ++ T+ L+ LL+EV ++ + I V+ Sbjct: 676 VKQLERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQIHTTHTI---VVRGAA 732 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 S V D+ RL Q+F +LSNA+ +S TV + + V+++G IP + Sbjct: 733 PCSLVGDKDRLGQVFINLLSNAIKYSPAAETVEIDLSTSRETVTVRVRDHGFGIPREQRD 792 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF RF A Q+ G+G+GL IVE + HGG +++ S +T +P K Sbjct: 793 KVFERFYRAAGPKQKAIPGLGMGLYIVEEIVKRHGGTITVDSEVGKGSTFTVTLPRK 849 >gi|238757450|ref|ZP_04618635.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236] gi|238704212|gb|EEP96744.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236] Length = 923 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 11/242 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + + +A++ K+ + +S+E+R+PL +G +LL+ + L+ +Q Q E Sbjct: 362 ALAKSKQVAEQANQRKSEHLTTISHEIRTPLNGALGAVELLQNT---PLSPEQMQLAETA 418 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671 S LL ++N++LD + +++G M L+ L LL++ +I + + I + V Sbjct: 419 RQCSFSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLTIHSLVLNKPIALSTYV 478 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730 SD L D QRL QI +L NA+ F+ +GS + L R FSV++ G I Sbjct: 479 SSDVPL-ELELDSQRLKQILINLLGNAVKFTQQGS-ISLHVCRKGQKLCFSVEDTGCGID 536 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 P++ + +F FV N+ Q G GLGL+I ++ + GGH+ ++S + + + +P Sbjct: 537 PQNQLR-IFQPFVQNSDYAQ--GTGLGLTIADNLAGMMGGHLVLTSQTDRGSRFSLILPL 593 Query: 791 KE 792 E Sbjct: 594 SE 595 >gi|219852259|ref|YP_002466691.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546518|gb|ACL16968.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 478 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 24/273 (8%) Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 +P+ N + ++ ++++ +AE +L E L++++E F S++L+ PL Sbjct: 214 VPMLNPEGECDSVLVVATDISERKKAEESLKEYAGRLQRSNEDLQRFAYIASHDLQEPLR 273 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +I+ ++ +L G L++ +++EYI + L+ D+L + ++A + + I Sbjct: 274 SIVSYSQMLDRRYRGKLDADADEFLEYIVEGGLRMQMLIQDVLAFSRINASEPQFTETNI 333 Query: 646 --VLNDL---LNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 VL D+ LN++ QS AT HE L +ADR +++Q+F+ ++SNA+ Sbjct: 334 EAVLVDVEEGLNQMIQSSGATITHE-----------PLPMVMADRMQMVQLFTNLISNAV 382 Query: 700 DFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757 F G ++ +A R + FSV +NG I D + +F F R + G G+G Sbjct: 383 KFHRPGVVPMIHVRAGRIGQFWEFSVADNGIGIESDYFERIFVIFQRLHTRQEYEGTGIG 442 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 L+I ++ HGG + ++S+ TT +P+ Sbjct: 443 LTIARKILDRHGGQIRVTSTVGRGTTFYFTLPA 475 >gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 839 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 4/231 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ D +K+ FV VS+ELR+PLT+I G L+ G L K V + L+ Sbjct: 465 LKRIDRMKSEFVSTVSHELRTPLTSIRGSLGLVWGGVTGELPEKAKALVGIAKNNCERLI 524 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDILD +++G M+ + L+ LL +V + ++ +++ V+ G+ V Sbjct: 525 RLINDILDSEKIESGKMRFEMQPVELDPLLEQVLAANEGFAAQHQVKL-VLRTGRRPVLV 583 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D RL Q+ + +LSNA+ FS TV + G + + G IPE+ + +F Sbjct: 584 NVDSDRLTQVVTNLLSNAIKFSPAEGTVQVLLRSGAGRVRVEISDKGPGIPEEFRQHIFQ 643 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F + QR G GLGLSI ++ + G + ++ TT +P Sbjct: 644 KFSQADASDTRQRGGTGLGLSISKAMLERMEGSIGFTTEQNVGTTFFFELP 694 >gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 616 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 161 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 281 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 323 >gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1] Length = 1268 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ++ E L + E A++ K+ F+ ++S+E+R+P+ ++G L+ S +L+ Sbjct: 512 DLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+E +++ LL L+NDILD + ++AG ++L+ L DLL ++ ++ Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 628 Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 + + + V +D + D R+ Q+ ++ NA+ F+ KG IL + R Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + FS+K+ G I + ++F+ F RR G GLGL+I + +NL GG + Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745 Query: 774 ISS 776 + S Sbjct: 746 VES 748 >gi|218887627|ref|YP_002436948.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758581|gb|ACL09480.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 874 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 104/394 (26%), Positives = 179/394 (45%), Gaps = 47/394 (11%) Query: 416 FENLTVQV--DLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWKT 469 EN+ ++ DLE T + E ID +SEG+ V PD R+ L+NPA + Sbjct: 506 LENMVLERTRDLEQALGT-AESHREKIDLILRSVSEGLLVTDPDHRVVLTNPAAEDILGL 564 Query: 470 EENRLSPGTHIRNIAATC-------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522 +PG + A R + D D F R + G + + Sbjct: 565 A----APGDLVAEAVADLIEDAPLRKRLVHCLD--DTMGGAPCQFGFSRPTEAGGVHHYT 618 Query: 523 DSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 S E +A T V V V +ER L D +KN F+ ++ELR Sbjct: 619 ASTSEVR-----DAGGGRTGVVTVLHDVTSEREL----------DRMKNEFLTTAAHELR 663 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKL 640 +PLT I+GF++LL T L +Q QY+ YI+ + ++ +V D+LD++ ++ G L Sbjct: 664 TPLTTILGFSELLVTGGDIPL-VEQRQYLGYINEQAALVSGIVADLLDISRIEMGQGFSL 722 Query: 641 NYSTIVLNDLLNEVKQSIATKM---HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 DL+ +++ +A + ++ R+ ++ + + + V D ++ Q+ +LSN Sbjct: 723 KRRPC---DLVALIRRKVAAHIVGTRRHSFRL-LLPETPVPAVV-DADKVAQVLDNVLSN 777 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGL 756 A+ +S G V ++ SV++NG + + +F +F +A G GL Sbjct: 778 AVKYSPGGGVVEVRLRPGQDAHEVSVRDNGMGMSPEQLSRMFEKFYRGDASNTGIPGTGL 837 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 G+SIV+ I HGG V++ S+ + TT+ +P+ Sbjct: 838 GMSIVKHLIEAHGGEVAVESAKDVGTTVRFTLPT 871 >gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 616 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 161 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 281 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 323 >gi|152983809|ref|YP_001351594.1| alginate biosynthesis sensor protein KinB [Pseudomonas aeruginosa PA7] gi|150958967|gb|ABR80992.1| alginate biosynthesis sensor protein KinB [Pseudomonas aeruginosa PA7] Length = 595 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 87/352 (24%), Positives = 162/352 (46%), Gaps = 47/352 (13%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + +G+ +F GRI+ +NP A R L+ + + G I I Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILGDEG--------- 310 Query: 498 DLFAAIITSFDDERKSLQGTL--ELLSD---------SVLEYSIIPL--PNAQTMLTFVN 544 L A+ K+LQG + E + D +L +S+ P+ P ++ + Sbjct: 311 -LREAV-------EKALQGEVQDEAMPDLEVDVAGESRLLAWSLYPVTHPGGHSVGAVLV 362 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V D +TE+ R + +++ FV S+ELR+P+T + LL+ S Sbjct: 363 VRD-------VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAES 411 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +++ ++ + + L+ L+ND+L+ + G+ KL +T L DLL + +Q K Sbjct: 412 READLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELTTCNLVDLLTQAQQRFVPKGEA 471 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + +++ +L DR ++ ++ +L NA+ SS+ + L+A R + +V+ Sbjct: 472 RRVSLELELGEELPHLQLDRLQIERVIDNLLENALRHSSESGQIHLQARRQGDRVLIAVE 531 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +NG IP +F FV + + G GLGL++ + I LHGG +++ S Sbjct: 532 DNGEGIPFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRS 581 >gi|332655192|ref|ZP_08420933.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16] gi|332516052|gb|EGJ45661.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16] Length = 879 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 146/270 (54%), Gaps = 13/270 (4%) Query: 532 PLPNAQTMLTFVNVTDSVRA---ERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTN 586 PL + +T + F + + A ++ L EK A L K ++++ + ++ +S++LR+PLT+ Sbjct: 609 PLDSFETSILFSVLGECALALENQKNLEEKEAAAVLAKNEQLRANLLRSISHDLRTPLTS 668 Query: 587 IIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I G +LL L +K+ Y + I + L+NLV ++L ++ ++ G M L+ ST Sbjct: 669 ISGNANNLLSNGNLFDTKTKEQMYTD-IYDDAMWLINLVENLLSVSRLEEGRMNLHVSTE 727 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 ++++++ E + I K E ++ ++ + L D + ++Q+ I+ NA+ ++ G Sbjct: 728 LMDEIVAEALRHINRKSVEYHLNVQSSEEYLL--VQVDAKLIIQVIINIVDNAIKYTPPG 785 Query: 706 STVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 + + + R G+ ++ SV +NG IP+ +F+ F VSN RR +GLGL++ + Sbjct: 786 TEIDI-GWRKQGNLVYVSVSDNGPGIPDQAKPHIFDMFYSVSNQIADSRRSMGLGLALCK 844 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 S IN HGG ++++ + +P+ E Sbjct: 845 SIINAHGGEITVTDQLPHGSIFTFSVPAGE 874 >gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 586 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 75 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 131 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+K+ G IP+ + Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293 >gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 947 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 127/249 (51%), Gaps = 11/249 (4%) Query: 537 QTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q +L V ++++ ++ + L + +A +A KN F+ ++S+E+R+PL I+G + LL+ Sbjct: 538 QRLLAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMGLSQLLR 597 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T+ SL +Q+ Y++ + +S+ LL L+NDILD++ ++AG + + + LL EV Sbjct: 598 TT---SLTEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAKLLREVA 654 Query: 656 QSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710 E I + ++ +L + + D RL Q+ ++ NA+ F+S G + L Sbjct: 655 GMYEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGGVTLRVDCL 714 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768 + + F V ++G + + + +F+ F R G GLGL+I L Sbjct: 715 EESATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAICRRLSELM 774 Query: 769 GGHVSISSS 777 GG + SS Sbjct: 775 GGSIRAESS 783 >gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 629 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 122/235 (51%), Gaps = 12/235 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + ++ +A+ K+ F+ ++S+ELR+PL I+GF L + + + Q + + ++ Sbjct: 277 LEQARQSAEEANRAKSVFLANMSHELRTPLNAILGFARLAGQAPQATPD--QREQLGFVE 334 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + LL+L+ND+LD+A +++G L + L L + +++ + + + + ++ Sbjct: 335 RNGEHLLSLINDVLDMAKIESGRQTLEEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEVA 394 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNN 726 + ++D ++L QI ++SNA+ ++ G V+L A R + + + +V + Sbjct: 395 EDLPRHILSDGRKLRQILINLVSNAVKYTDAGR-VVLSARRQSAEPSGGHDGLLLAVADT 453 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780 G IP + VF FV + G G GLGL I F+ L GG + + S+S EG Sbjct: 454 GRGIPVEDQDRVFEPFVQSGRVGTTEGTGLGLPITREFVELMGGEIGLESTSGEG 508 >gi|330878979|gb|EGH13128.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. glycinea str. race 4] Length = 908 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 459 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 514 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 515 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 574 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 575 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 633 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 634 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 692 Query: 789 PSKE 792 P E Sbjct: 693 PMHE 696 >gi|307701336|ref|ZP_07638357.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Mobiluncus mulieris FB024-16] gi|307613497|gb|EFN92745.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Mobiluncus mulieris FB024-16] Length = 272 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 5/214 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +++E+RSPLT +IG ++LL+ G L+ +Q + V I ++ +L ++ D L A +DA Sbjct: 51 LAHEIRSPLTVLIGNSELLQDKTFGELSERQQEMVSRIETNAHLLQDMAEDFLTAARIDA 110 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 + +L T + L +V +++ H N + V G+ ADR+ + Q S ++ Sbjct: 111 ELFELKLQTFDIVGLTRQVAADLSSARHAN---VTVTRRGRPIWVQADRRLIQQALSNLI 167 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755 +NA++ + + + ++ R++ + + ++GS + E K +F FV+ R + G G Sbjct: 168 NNAINHAGIDAPITIRPYRNDEGCVIEISDSGSGMSESERKRIFEPFVTGNTR--QPGAG 225 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LG+ I + I LH G + + S + TTI +P Sbjct: 226 LGMMITQKIITLHQGRILVDSITQHGTTIFVVLP 259 >gi|114770341|ref|ZP_01447879.1| Na+/solute symporter [alpha proteobacterium HTCC2255] gi|114549178|gb|EAU52061.1| Na+/solute symporter [alpha proteobacterium HTCC2255] Length = 886 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 5/242 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA L + N L + K+ F+ HVS+ELR+P+T+I F+++L++++ L+ Q +Y Sbjct: 646 RAASELMDANSKLTELGTQKDEFLSHVSHELRTPMTSIRSFSEILQSNE--KLDKDQLKY 703 Query: 610 VE-YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 I+ S L L+++ILDL+ +++G +KLN S + LN++L QS + +N Sbjct: 704 FSTIINDESKRLTRLLDEILDLSFLESGQVKLNISNLRLNEILQTALQSTQQSIANSNAL 763 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNG 727 ++ + D RL Q+F +++NA+ ++ K T+ + +DN S ++NG Sbjct: 764 LEFDVNFTNTKIQTDPDRLSQVFINLITNAVKYNDKSQPTLKISCQKDNDFLCVSFQDNG 823 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE +F +F ++ GVGLGL+I + + GG + S G + Sbjct: 824 PGIPEAKHTIIFEKFTRLSNTENSSGVGLGLAISQEIMKNLGGSLICLESKIG-ANFQVK 882 Query: 788 IP 789 IP Sbjct: 883 IP 884 >gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586] gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586] Length = 967 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + SL S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682 +ND+LD + ++AG ++++ + L L+ E + + ++ E I+++ +DG + Sbjct: 522 LNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQFADGVTQFWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I G I F V+++G I ++ S+F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPAGQGIRFEVQDSGIGIAQEEQASLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + +SS Sbjct: 642 F-TQAEAGRRKQGGTGLGLAISRKLVQAMGGEMRLSS 677 >gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator hybrid protein [Stenotrophomonas sp. SKA14] Length = 661 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 551 AERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 A L + A R A E +K+ F+ +S+ELR+PLT I+G+++LL L +++ Sbjct: 254 AREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELL----LQRVDNTS 309 Query: 607 SQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662 Y + I+ S+ L++D+LDL+++ G ++L + LN LL E Q + + Sbjct: 310 PLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLNLLLGEAIGAQELVAEG 369 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ +++ L + D RL Q+ +LSNA+ F+ + L+ D ++ + Sbjct: 370 KALDVHLQLPEQPSL--VLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQLQADGNHWVIT 427 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I + +F+RF RR G+GLGL+IV+ + LHGG V+ +S G Sbjct: 428 VHDTGDGIAPEFLHHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHG 487 Query: 781 -VTTINCRIP 789 T R+P Sbjct: 488 HGATFTVRLP 497 >gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10] gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10] Length = 559 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 11/228 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K F+ +S+E+R+P+ +IG DLL S+L +Q +Y I S+ L+N++ Sbjct: 165 AAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QDEQREYATIIRNSADALVNII 221 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + +++G M+L L + EV + + + N+ + + ++ S V D Sbjct: 222 NDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGD 281 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ ++SNA+ F+++G ++ KA + F+VK+ G I +F Sbjct: 282 MGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLF 341 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 F RR G GLGL+I +S + + GG + + S + EG T + Sbjct: 342 KPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFV 389 >gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 792 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL+ +IG++++L ++ + I +S+ LL L+ND+L Sbjct: 277 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 336 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ ++AG + L T + L+ +V + + + + R ++ +G LG+ D+ +L Sbjct: 337 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 396 Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745 Q ++ NA FS G ++ ++ R+ G D++ FSV + G + ++ +F RF Sbjct: 397 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 456 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+I +F+ GG + + S+ T R+P Sbjct: 457 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 502 >gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 1563 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 2/182 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 AE LT+ A K+ F+ +S+E+R+PL IIGF++++ + G + N + Y Sbjct: 1316 AEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGPIGNDRYKDY 1375 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S + +++L+ND+LDL+ ++AG + L +S + ND++NE + + + + I Sbjct: 1376 LKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVSTNDVINECVALMQPQANRERVII 1435 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728 + + VAD + L QI +LSNA+ ++ G VIL A NG+ V++ G+ Sbjct: 1436 RASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGGQVILSTALESNGEVALRVRDTGT 1495 Query: 729 SI 730 + Sbjct: 1496 GM 1497 >gi|110803461|ref|YP_698636.1| sensory box histidine kinase [Clostridium perfringens SM101] gi|110683962|gb|ABG87332.1| sensory box histidine kinase [Clostridium perfringens SM101] Length = 787 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 400 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 458 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 459 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 504 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 505 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 564 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 565 VNLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 624 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I ++ + D ++ +I +LSNA+ F+ G + + D Sbjct: 625 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSILIDETWVDIR 684 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 685 VKDTGIGIPSHMKEFIFGRFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 744 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 745 GSEFSILLPN 754 >gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1051 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 19/251 (7%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT +VT RAE + A A K+ F+ H+S+ELR+PL I+G +L Sbjct: 640 QTHCIMHDVTARRRAEEEIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVEL--- 696 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + + + KQ +Y+E S LL+++NDILDLA ++AG +L L +++ + Sbjct: 697 AHMACADEKQCKYLELAKQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIE 756 Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714 +A + + D ++ +A D+ RL Q+ + ++ NA+ F+ +GS +V L +R Sbjct: 757 PLAMLGRRKGLEVTWRMDPRIPDRLAGDQGRLRQVLANLVGNALKFTERGSVSVDLGLSR 816 Query: 715 DNGD----------FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIV 761 + IFS+ + G IP+D +F F +++AH + G GLGL I Sbjct: 817 GGFETRPYCPAGMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHV-KFGGTGLGLCIS 875 Query: 762 ESFINLHGGHV 772 + + + G + Sbjct: 876 KRLVEMMQGTI 886 >gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 681 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A +A+ K+ F+ ++S+ELR+PL I+GF LL+ + Q++ ++ I + L Sbjct: 296 AAEQANLAKSDFLSNMSHELRTPLNAILGFAQLLEGGTPAPTET-QTKRLKEILKAGWYL 354 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +++N+ILDLA +++G + ++L +LL E + E+ I++ ++ S Sbjct: 355 TDMINEILDLAKIESGQTPMLLEPVLLTNLLFECQSMFEPNALESGIKLLFSMVNRMWSV 414 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVF 739 AD+ +L Q+ S +LSNA+ ++S+ TV +K + G SVK+NG+ + + +F Sbjct: 415 RADQTKLKQVVSNLLSNAIKYNSEQGTVEVKCSESALGRIRISVKDNGAGLSAEKLAQLF 474 Query: 740 NRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777 F G + G G+GL++ + I + GG + + S+ Sbjct: 475 QPFNRLGQEVGVKEGTGIGLAVSKKLIEMMGGTIGVESA 513 >gi|240138280|ref|YP_002962752.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens AM1] gi|240008249|gb|ACS39475.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens AM1] Length = 1937 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L KQ ++ Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+A+ T LL+L+NDILDL+ +++G + L + L D+ + ++ E ++ Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349 Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + D L S D +RL Q+ +LSNA F+ KGS V LK G Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I ED + +F F R+ G GLGL+I L GG + + S Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465 >gi|222095532|ref|YP_002529592.1| sensor histidine kinase [Bacillus cereus Q1] gi|221239590|gb|ACM12300.1| sensor histidine kinase [Bacillus cereus Q1] Length = 366 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 120 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 178 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + N+ Sbjct: 179 VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 238 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 239 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 297 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S +LH G +++ S+D+ T Sbjct: 298 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 353 Query: 785 NCRIP 789 ++P Sbjct: 354 TVKLP 358 >gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp. patens] Length = 725 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 43/281 (15%) Query: 549 VRAERALTEKNE-----ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +R E A+ E E A+R ADE KN F+ +S+E+R+PL + G +L T+ Sbjct: 128 MREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQVLATT--- 184 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ +Q + V + S+ +LL +++DILDL+ V+AG MKL + D++ V ++ Sbjct: 185 PLDPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVKHVVRTAIA 244 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---- 714 + I I+ I+D D R+ Q+ + ++ NA+ F+ KG V L A+ Sbjct: 245 ASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRKGHVKVRLHIAKFPID 304 Query: 715 --------DNGD------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752 D D F +++ G IP++ ++F +F V ++ + Sbjct: 305 ERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLVHSSTTRKYG 364 Query: 753 GVGLGLSIVESFINLHGGHVS-ISSSDEGVT---TINCRIP 789 G GLGL+I + + L GH+S IS +G T TI C+ P Sbjct: 365 GTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTIRCKRP 405 >gi|30026138|gb|AAO47026.1| ethylene receptor [Arabidopsis thaliana] gi|30026140|gb|AAO47027.1| ethylene receptor [Arabidopsis thaliana] gi|30026148|gb|AAO47031.1| ethylene receptor [Arabidopsis thaliana] Length = 505 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|254226158|ref|ZP_04919754.1| sensor histidine kinase FexB [Vibrio cholerae V51] gi|125621326|gb|EAZ49664.1| sensor histidine kinase FexB [Vibrio cholerae V51] Length = 785 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] Length = 911 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 13/233 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASS 617 N+ ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ Sbjct: 273 NKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSA 328 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 LL ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 329 NNLLCIINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDV 388 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPE 732 V D RL QI + +L NA+ F+ +G+ IL A+ + +++ G I E Sbjct: 389 PEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTGIGISE 448 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F F RR G GLGL I E + GG +S +S D G T Sbjct: 449 SQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGST 501 >gi|229528639|ref|ZP_04418029.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae 12129(1)] gi|229332413|gb|EEN97899.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae 12129(1)] gi|327484870|gb|AEA79277.1| Aerobic respiration control sensor protein arcB [Vibrio cholerae LMA3894-4] Length = 785 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] Length = 781 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 11/240 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + + E+ L A + K F+ +S+E+R+PL IIG +D++ + G L+ Sbjct: 364 DITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLS---GPLD 420 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ I AS LL ++NDILDL+ ++AG M+++ L L + + Sbjct: 421 PEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRPLAN 480 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718 E + + V +S G + D R+ Q+F ++ NA+ F+ G+ V L+AA D G Sbjct: 481 EKGLSLSVDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGA-VSLRAAVDTGAAPPR 539 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V++ G IP D +F+ F R G GLGL+I GG ++++S Sbjct: 540 VTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDITVTS 599 >gi|30026142|gb|AAO47028.1| ethylene receptor [Arabidopsis thaliana] Length = 505 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|30026136|gb|AAO47025.1| ethylene receptor [Arabidopsis thaliana] Length = 505 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1450 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 123/244 (50%), Gaps = 13/244 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 F ++T E L E +A + K++F+ ++S+E+R+P+ IIG L L+T Sbjct: 677 FEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTP--- 733 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+++Q Y+E + S+ LL ++NDILD + ++AG + + L D+++ + + Sbjct: 734 -LDARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGL 792 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG 717 K + + + ++ + + D RL QI + + +NA+ F+ G +++ + + Sbjct: 793 KAEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGA 852 Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D++ F V++ G + + C +F F RR G GLGL+I + L GG + Sbjct: 853 DWVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEI 912 Query: 773 SISS 776 + S Sbjct: 913 GVES 916 >gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] Length = 876 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 5/240 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA + +A + K F ++S+ELR+PLT I + + +LN++Q ++ Sbjct: 356 RATLMRRRIEEEAIKAKLQFFTNISHELRTPLTLIADPVNYIIHDD--NLNTQQRSMLQI 413 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + +L LV++ILD V +G M+L S L + + + + + +I I + Sbjct: 414 VQRNVLVLTQLVSEILDFRKVQSGKMELRLSDFNLTENMKQWITLFSASAQKKHITISLD 473 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + AD ++ +I +LSNA+ ++++G + LKA + + I SV +NG I Sbjct: 474 APDTI-MLRADHDKIERICYNLLSNALKYTAEGGKISLKAIKKDERVIISVTDNGCGIAS 532 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 D +FNRF + G RG G+GL+IV++F LH G VS +S +T IP K+ Sbjct: 533 DELPYIFNRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSKLGKGSTFTINIPVKQ 590 >gi|228966149|ref|ZP_04127211.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis serovar sotto str. T04001] gi|228793518|gb|EEM41059.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis serovar sotto str. T04001] Length = 353 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 125 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 182 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 183 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 240 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 241 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 300 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 301 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 352 >gi|313123385|ref|YP_004033644.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279948|gb|ADQ60667.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 502 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L NE ++ +E ++ F+Q V++E+R+PLT I G + +K + + +S ++ Sbjct: 246 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 303 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + L+ LVN+ LD + +G +++ S ++N+V+Q + +N +I + Sbjct: 304 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGDKIILD 363 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + AD+ R Q+ + NA+ F++ G T+ L+ R FSV++ G + + Sbjct: 364 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRLQHGATFSVQDTGIGMTQ 421 Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + K +F RF + A G GLGLSIV S + HGG + IS EG T Sbjct: 422 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 476 >gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1263 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 9/251 (3%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNII 588 I L N + V + D V ER ++ LR ++D++K+SF+ ++S+E+R+P+ I+ Sbjct: 858 IALQNKELQRGRVELEDRVH-ERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAIL 916 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF++LLK + +++++E I ++ LL L++DILD++ + +G +KL ++ Sbjct: 917 GFSELLKDKDID--EKDRNEFIEIIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYID 974 Query: 649 DLLNEVKQSIATKMHE-NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++LNE+K K ++ ++ + K AD R Q+ + +L NA+ F+ KGS Sbjct: 975 EVLNELKDFYRLKTTSLVSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALKFTEKGSI 1034 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 R NG+ +F V + G I + K VF+ F + N G G+GLSI I Sbjct: 1035 RFGCKPR-NGEALFHVVDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLI 1093 Query: 766 NLHGGHVSISS 776 + GG + + S Sbjct: 1094 SGMGGDIWVES 1104 >gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 945 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F +++ + E AL E A+E K F+ +S+E+R+PL ++G +LL ++L Sbjct: 434 AFSDISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQL- 492 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++Q Y++ I SS LL L+ D+LD++ ++AG + L S DL++E+ Q A Sbjct: 493 --DNQQKDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAA 550 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDN- 716 ++ D +L + D R+ QI S +L+NA+ F+ G V + +RD Sbjct: 551 AAQAKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVLRVRTESRDGE 610 Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + ++ V + G I +D +F F + + G GLGL I + L G++ + Sbjct: 611 RSNILWQVSDTGRGIAQDDQTLIFEPFYQTEGNTNVIAGTGLGLPICQRLTQLMNGNIRM 670 Query: 775 SS 776 S Sbjct: 671 VS 672 >gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 478 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 24/232 (10%) Query: 559 NEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 NE +RK + F+ +VS++L++PLT I GF ++ +Q E + Sbjct: 228 NEMMRKVQAGQRAQRDFIANVSHDLKTPLTAIQGFAQ--------AILDGTAQSPETLRN 279 Query: 616 SSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++T++ N LV D+L LA DAG L + + DLL E + + + + Sbjct: 280 AATVIYNEASRMYRLVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVI 339 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ + D L AD +RL+Q + ++ NA+ ++ G T++L+ + G + V++ G Sbjct: 340 LR-LEDASLPVLFADGERLMQALANLMDNALKYTPAGGTIVLRGKVEEGHLLLEVQDTGK 398 Query: 729 SI-PEDMCKSVFNRFV-SNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776 I PE+ + +F RF N R Q + GLGL IV + HGG V + S Sbjct: 399 GISPEEQTR-IFERFYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYS 449 >gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 1117 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 9/235 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + E L + EA +A K+ F+ +S+E+R+P+ ++G +++K ++L + +Q Sbjct: 585 IETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIVKATQL---DQQQKH 641 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +++ +S+ LL ++NDILD + ++AG + + L LL EV +S A K +NN Sbjct: 642 HIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEVVESFALKAEQNNTT 701 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVK 724 + + + S F++D RL QI S ++ NA+ F+ G ++ D ++ Sbjct: 702 LILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEILVTAKITHTLDATVLECAIA 761 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++G I + +F+ F R+ G GLGL+IV+ L G V++SS+ Sbjct: 762 DSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNVSST 816 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 23/240 (9%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+PL +IG T +L+ +K L++ Q VE I S LL +ND+L Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTK---LDAHQQDLVETIRQSGETLLITINDVL 214 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D A +++G ++L + L D L A K + + + D ++ S V D RL Sbjct: 215 DFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRL 274 Query: 688 LQIFSKILSNAMDFSSKGSTVI--------LKAARDNGD--------FIFSVKNNGSSIP 731 QI +LSNA+ F+ G + + + N D +FSVK+ G IP Sbjct: 275 RQILINLLSNAIKFTDVGEVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIGIP 334 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRI 788 +D +F RF + ++ Q G GLGL I + + GG + + S+ EG T C + Sbjct: 335 KDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVV 394 >gi|254285971|ref|ZP_04960932.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226] gi|150423881|gb|EDN15821.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226] Length = 785 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|153803102|ref|ZP_01957688.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3] gi|124121353|gb|EAY40096.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3] Length = 785 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1181 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 10/238 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + +A + K+ F+ + +E+R+P+T ++G ++LL + L + Q Y I + Sbjct: 803 KQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPL---DPVQRSYAGSIQQAG 859 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675 + LL LVND LDLA ++AG ++L+ L LL++V+ + + + + D G Sbjct: 860 SHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQRQLAFQRGDDPPG 919 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDM 734 + S D R+ QI +L NA+ F+ +G + DNG F V ++G I + Sbjct: 920 PI-SVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLDDNGAGLCFEVHDSGPGINAEQ 978 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+RF + R R G GLGL+I + GG + + S R+P Sbjct: 979 QERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPGKGARFQVRLP 1036 >gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia sp. Ejp617] Length = 992 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 131/253 (51%), Gaps = 9/253 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E++L E + +A + K+ F+ VS+ELR+PL IIG DLLKT Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 540 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 541 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 600 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + D + + D RL Q+ S +L+NA+ F+ G ++ A GD+ Sbjct: 601 MVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 658 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F V+++G IP +F+ F V + + +G GLGL+I E +N+ G + + S Sbjct: 659 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVES 718 Query: 777 SDEGVTTINCRIP 789 + RIP Sbjct: 719 EPGMGSQFIVRIP 731 >gi|307611018|emb|CBX00652.1| hypothetical protein LPW_23611 [Legionella pneumophila 130b] Length = 676 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 23/276 (8%) Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 S +P+ N + ++ V +T V LT+ EA A++ K +F+ ++S+++R+PLT + Sbjct: 243 SKVPITNLSGNIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 IG ++LL+ + + +Q + + S LLN++NDILD V AG M I Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354 Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701 DL ++ + K+ +K ++ GK + ++ +DR+++ ++ +L NA+ F Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412 Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 + KG I L+ + N F V + G IP + + VF RF +S +++G +G G Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL I +S++NL GGH+++ S + TT IP + Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508 >gi|308069058|ref|YP_003870663.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305858337|gb|ADM70125.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 853 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A +K + + +A+ K+ F+ H+S+E+R+PL IIG + LL ++L ++ Q Y+ Sbjct: 205 KASEQKRKEMDEANRAKSIFLAHMSHEIRTPLNGIIGLSKLLNKTELTAV---QRDYLHK 261 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + ASS L ++++++LD + ++AG ++L LL + ++ T + + I + I Sbjct: 262 LLASSRTLSSMLSNVLDFSKMEAGSLELEKVEFEPEKLLRHLADTVGTLLEDKEIEVVFI 321 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727 +D L SF D R+ Q+ S +L+NA+ F+ +G ++ L F V++ G Sbjct: 322 TDPALPKSFKGDPLRMEQVLSNLLTNAIKFTDQGHVLLQVKMLSQQEGRVGVSFMVEDTG 381 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I E +F F+ + RR G GLGL+I + GG V + S Sbjct: 382 IGISETCMDKLFVPFIQASTSTSRRYGGSGLGLAISKHLAEAMGGKVEVKS 432 >gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1117 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 10/212 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ +IG + LL + +LN +Q Q + + + LL ++NDILD+A Sbjct: 642 FLANMSHEIRTPMNAVIGISHLLHNT---ALNDQQRQLLTKLQIAGRSLLGIINDILDIA 698 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690 ++AG M+L + L +E+ + + + E +R V L G + D R+ QI Sbjct: 699 KIEAGEMRLENNPFSPRLLFDELSELFSPQAQEKGLRFSVSVVTPLPGLLIGDALRVNQI 758 Query: 691 FSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++ NA+ F++ G V + D D SV++ G IP D+ +F+ F Sbjct: 759 LMNLVGNALKFTTVGGVDVTVSCESDTADTCWLRLSVQDTGCGIPADVLGQLFSPFTQAD 818 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGLS+V GG V + S Sbjct: 819 ASTTRRFGGTGLGLSVVRGLSEQMGGRVGVES 850 >gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 1436 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 14/251 (5%) Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V ER + EA + A E K+ F+ +S+E+R+P+ ++G +LL+ +KL Sbjct: 809 VTTEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q Q V + S LL++++DILD A ++AG + ++ + L + + +A++ HE Sbjct: 866 EQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPTATDLRAVFDGTVGLLASRAHE 925 Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDF 719 ++ + V ++ S D RL QI +LSNA+ F+ GS + AA D Sbjct: 926 KSLTVHVDVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAQCTYAADDTAHL 985 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V + G I ++ ++F FV RR G GLGL+I L GG + + S+ Sbjct: 986 AICVSDTGIGISAEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESA 1045 Query: 778 DEGVTTINCRI 788 T + + Sbjct: 1046 QGQGTAVTLEL 1056 >gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 633 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%) Query: 551 AERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 AE+A E +A R+A+ K+ F+ +S+E+R+P+ ++G T LLK + L+++Q+ Sbjct: 229 AEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMNGVMGMTSLLKNT---PLSAEQA 285 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 YV I+ SS LL+++ND+LD + +++G M L T L + +V A K + + Sbjct: 286 DYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERTFELKKCILDVIDLFAEKSLMSGV 345 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFS 722 ++ D L + + D RL Q+ +L+NA+ F++ G +L+ + F Sbjct: 346 ALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTTVGHVFLKVGLLRTVENRITIGFE 405 Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G IP++ +F F S +HR + G GLGL I E ++L G + + S + Sbjct: 406 VHDTGIGIPKNKISHLFKAFSQLDSTSHR-KFGGSGLGLIISEKLVSLMNGSIEVKSKE 463 >gi|319936817|ref|ZP_08011229.1| sensor protein [Coprobacillus sp. 29_1] gi|319808085|gb|EFW04657.1| sensor protein [Coprobacillus sp. 29_1] Length = 894 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 142/250 (56%), Gaps = 8/250 (3%) Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 ++ E+ + EK++A + K ++++ + ++ +S++LR+PLT+I G +L +S +L+ K Sbjct: 643 ALEKEQVIREKSKADLIAKNEQLRANLLRSISHDLRTPLTSISGSAGILLSSS-DTLDEK 701 Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + Q I S L+NLV ++L + ++ G M+LN +T ++ ++++E Q I+ + E Sbjct: 702 NKKQLYTDIYDDSLWLINLVENLLSVTRIEDGTMQLNMTTELIEEVVHEALQHISRQGRE 761 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 ++I+++ D + D + ++Q+ ++ NA+ ++ KGS +++ + + V+ Sbjct: 762 HHIQVQ--QDNEFILVKMDTRLMIQVIINLIDNAIKYTPKGSHILIHVFKQKQEVCIDVQ 819 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++G I ++M +F+ F + + RR +GLGL++ +S +N H G +S+ + Sbjct: 820 DDGPGITDEMKPHIFDMFYTGNMKVADSRRSLGLGLALCKSIVNAHHGTMSVLDNQPKGA 879 Query: 783 TINCRIPSKE 792 + +P +E Sbjct: 880 ILRVILPVEE 889 >gi|166030485|ref|ZP_02233314.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC 27755] gi|166029737|gb|EDR48494.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC 27755] Length = 899 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 145/271 (53%), Gaps = 8/271 (2%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584 E + P N+ + ++ E+ EK EA L K ++++ + ++ +S++LR+PL Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686 Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 T+I G ++LL ++K+ Y++ I S L+NLV ++L + ++ G + L Sbjct: 687 TSISGNASNLLSNGDSFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIM 745 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 +++D++ E I K E++I ++ + L D + ++Q+ I+ NA+ ++ Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761 K S ++++ + I S+ ++G+ I +++ +F+ F S A++ RR +GLGLS+ Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +S IN HGG +++S + T +P+ E Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894 >gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] Length = 615 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 2/230 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G ++LN + L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++ +I +LSNA+ F++ G + + + +K+ G IP D +S+F RF Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERF 535 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + + G G+GL +V+SF+ +H G V+I+S T ++P+ Sbjct: 536 FQIDKTLKKNKEGTGIGLHLVKSFVEMHNGKVTINSELGKGTEFIIKLPA 585 >gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 917 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 16/256 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ L EK L + K+ F+ ++S+ELR+PL +I+ +++L+ + +L+ + +Y Sbjct: 487 AKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDEEEYA 546 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +S LL L+NDILDL+ V++G + + + + +++L ++++++ + + +++K Sbjct: 547 RIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQKKVQLK 606 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718 + + + D +R QI +LSNA F+ GS + L A D Sbjct: 607 INKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFTESGSVTVSIQRVADHRLTTAMRTIDTD 666 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +V + G IP++ + +F F R+ G GLGLSI F L GG +S+ Sbjct: 667 CWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLLGGWISL 726 Query: 775 SSSDEGVTTINCRIPS 790 SS +T +PS Sbjct: 727 SSEVGKGSTFTLYLPS 742 >gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] Length = 791 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 19/238 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613 LT + ++A +IK F+ ++S+ELR+PL +IGFT +LKT + S+Q++Y+ I Sbjct: 286 LTLAKKRAQEAVKIKTEFLANMSHELRTPLNGVIGFTRQMLKTP----ITSQQAEYLYVI 341 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL ++NDILD + +++ + L+ +L D +NEV + + E N+ ++ Sbjct: 342 ERSANNLLKIINDILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEKNLPLQHRI 401 Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGS 728 D KL + + D RL QI + ++ NA+ F+ KGS ++ R + F++ + G Sbjct: 402 DDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQIDFTITDTGI 461 Query: 729 SIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEG 780 I + +F F H G G GLGLSI + +N G + IS +G Sbjct: 462 GIKPEYRPILFQAFNQADASITRHYG---GTGLGLSITKRLVNEMKGEIDFISEPAKG 516 >gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 352 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R R L ++ E L++ + + F+ +VS+EL++P+ +I GFT+ L + G ++++ + Sbjct: 105 RTGRTLEKEIEELKRMENYRREFLGNVSHELKTPIFSIRGFTETLLEADPGDEATRRA-F 163 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E I ++ L NLV D+ +++ ++ G ++L L L+ EV +S+ + + Sbjct: 164 LEKILRNADRLANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSL 223 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + L + DR+RL Q+ ++ NA+ +++ G V ++ +G +V +NG Sbjct: 224 RCCVPENLPHVLGDRERLRQVLINLVDNAIKYNNPGGFVEVRLQEQDGSVRVAVVDNGIG 283 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + RF V + ++ G GLGL+IV+ +N H + I S+ +T R Sbjct: 284 IAPQHIPRLTERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFR 343 Query: 788 IP 789 +P Sbjct: 344 LP 345 >gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] Length = 580 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 ++ ++++ FV +VS+EL++P+T+I GF++ L G+++ K++ +++ I S L Sbjct: 351 KQLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAIDDKEALTEFLSIILKESVRL 407 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ D+LDL+ ++ KLN +++ E++ + K E I++ V + Sbjct: 408 ETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYV 467 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +AD RL QIF +++NA+ ++ +G +V + A G + F V + G + + +F Sbjct: 468 MADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIPRIFE 527 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF R G GLGL+IV+ + H G +S+ S TT + S Sbjct: 528 RFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLKS 579 >gi|206974651|ref|ZP_03235567.1| sensor histidine kinase [Bacillus cereus H3081.97] gi|206747294|gb|EDZ58685.1| sensor histidine kinase [Bacillus cereus H3081.97] Length = 458 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 20/244 (8%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613 + +NEA A +K+ F+ +S+ELR+PLT I+G+++LL L + Y + I Sbjct: 257 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHPTYKGLSVI 311 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668 ++S+ L++D+LDL+++ G ++L ++ DL+ +V+ Q +A + + + Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILE 368 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V L + D RL Q+ +LSNA+ F+ + + RD+G + SV ++G Sbjct: 369 LHVPPTPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGD 426 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785 I + +F RF Q G+GLGL+IV+ + +HGG V +S G T Sbjct: 427 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 486 Query: 786 CRIP 789 R+P Sbjct: 487 VRLP 490 >gi|163803362|ref|ZP_02197238.1| sensor histidine kinase FexB [Vibrio sp. AND4] gi|159172824|gb|EDP57666.1| sensor histidine kinase FexB [Vibrio sp. AND4] Length = 788 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q +Y Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTQEQRKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPTPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADLEDDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IP++ +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 1381 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ + EK + L A + K+ F+ ++S+ELR+PL +I+ + L +K G+L +KQ + Sbjct: 661 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 720 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665 + I++S + LL+L+N+ILDL+ V+AG + L+ + L DLL + Q IA + Sbjct: 721 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 776 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712 + +VI L + D QRL QI +L+NA F+ +G+ +L Sbjct: 777 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 836 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 R+ FSVK++G I ++ ++F F R+ G GLGLSI + +L GG Sbjct: 837 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 895 Query: 771 HVSISSSDEGVTTI 784 + + S+EG +I Sbjct: 896 RIHL-KSEEGKGSI 908 >gi|150025735|ref|YP_001296561.1| two-component system sensor histidine kinase [Flavobacterium psychrophilum JIP02/86] gi|149772276|emb|CAL43754.1| Probable two-component system sensor histidine kinase [Flavobacterium psychrophilum JIP02/86] Length = 576 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 117/217 (53%), Gaps = 5/217 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+++I LL+ + G LN +Q VE I S LL Sbjct: 346 FKELDFAKTNFIATISHELKTPISSIKFSLQLLEKEQTGILNEEQKYLVESIQDDSQRLL 405 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + ++L+L+ V+ G ++LN D++ +++ + + I + V +D KL + Sbjct: 406 KITGELLELSQVETGNIQLNIEKSNPYDIVYYATEAVKIQAEQKQIELVVEADEKLPNIK 465 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD+++ + L+NA+ +SS+ S +I+K ++N IF V + G I VF++ Sbjct: 466 ADKEKTAWVLINFLTNAIKYSSENSKIIVKLKQENNHIIFQVIDTGKGIDNRYKSKVFDK 525 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + +H + G GLGL+I + FI G +S+ S Sbjct: 526 YFQIPGSH---KLGTGLGLAISKEFIEAQNGTISVES 559 >gi|297580999|ref|ZP_06942924.1| sensor histidine kinase FexB [Vibrio cholerae RC385] gi|297534825|gb|EFH73661.1| sensor histidine kinase FexB [Vibrio cholerae RC385] Length = 785 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+S+Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 ++ R+P Sbjct: 500 STFSVTIRVP 509 >gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 993 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L E +A+E K++F+ +S+E+R+P+ IIG +L L Sbjct: 690 WIDITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 748 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L SQ ++ S+T L+ L+ + LDLA ++AG M+L+ + L L + V + + + Sbjct: 749 LGKIPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 808 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718 E + +++ G+ G + D RL Q+ +L NA+ F+ +G+ V+ L D+ + Sbjct: 809 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 868 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 ++++G I + VF F + AH G G GLGLSI + L G Sbjct: 869 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 925 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 926 ISLHSEPGKGTLVTIDLP 943 >gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 778 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|228928290|ref|ZP_04091331.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831337|gb|EEM76933.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 448 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMNV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|254302065|ref|ZP_04969423.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322257|gb|EDK87507.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 623 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 6/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+ E A++ KN F+ +S+E+R+PLT IIG++ +L ++ +SK+ +E Sbjct: 144 RELSISKEIAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-AKEINDPSSKEK--LEI 200 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LLN N++LD + +++G + LNY T + L ++ NI K+ Sbjct: 201 IHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRTLFQDIYHEHIDLAKSKNINFKID 260 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S +D+ ++ +I I+ NA+ ++ KG V+ +N F+V ++G I E Sbjct: 261 YLHANVSIYSDKIKIYEIAKNIIHNALKYTEKG-FVLCDVFVENNTLFFNVYDSGIGISE 319 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + K++F FV ++ G GLGLSI + + + G + + S +T +IP Sbjct: 320 ENIKNIFESFVQIG--SEQSGAGLGLSITKKLLEVLNGKIEVESKVGIGSTFKIQIP 374 >gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 743 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 12/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LT +A A+ K+ F+ ++S+ELR+P+ +IG LL+ ++L N++Q++Y+ I Sbjct: 352 LTAARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTEL---NAEQAEYLASIE 408 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L+ L+NDILDL+ ++AG ++L L +++ V S++ + +++ V D Sbjct: 409 HSADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSAQARLKWLQLSVEFD 468 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728 L V D R QI + NA+ F+ +G+ V++ AA + D V++ G Sbjct: 469 RNLPQLVLGDSLRFRQILLNLTGNAIKFTDQGA-VLVTAALSSADEDSVTLHLCVQDTGI 527 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + + +F F R+ G GLGL+I L GG + S TT + Sbjct: 528 GITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLWAESEPGIGTTFHL 587 Query: 787 RIP 789 +P Sbjct: 588 ELP 590 >gi|30026134|gb|AAO47024.1| ethylene receptor [Arabidopsis thaliana] gi|30026144|gb|AAO47029.1| ethylene receptor [Arabidopsis thaliana] Length = 505 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae] gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4] Length = 1268 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T ++ E L + E A++ K+ F+ ++S+E+R+P+ ++G L+ S +L+ Sbjct: 512 DLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y+E +++ LL L+NDILD + ++AG ++L+ L DL+ ++ ++ Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAE 628 Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717 + + + V +D + D R+ Q+ ++ NA+ F+ KG IL + R Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + FS+K+ G I + ++F+ F RR G GLGL+I + +NL GG + Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745 Query: 774 ISS 776 + S Sbjct: 746 VES 748 >gi|115358543|ref|YP_775681.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115283831|gb|ABI89347.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 664 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 9/244 (3%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L +A +ADE +K+ + VS+ELR+PL I G+ ++L++ G Q Sbjct: 267 RMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L +V D+LD +++ G ++L + + L ++ E + I N + + Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVREIGDTAQANGLEL 383 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 AD +RL Q+ S +LSNA+ F+ G + + SV + G Sbjct: 384 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRIKVSLNPAGARVRLSVADTGQG 443 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 I + +F+ F A +RG+GLGLSIV + LHGG V+ +S G TT+ Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503 Query: 787 RIPS 790 +P+ Sbjct: 504 MLPA 507 >gi|224282830|ref|ZP_03646152.1| sensor protein [Bifidobacterium bifidum NCIMB 41171] Length = 368 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R E E L+ AD+++ V +VS+ELR+P++ + + + + +E Sbjct: 115 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 170 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670 I + L +L+ +LDL+ ++AG LN L+D L+E + IA H ++I + Sbjct: 171 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 230 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728 V SD + D+ RL Q+F+ I++NA+ S+ G++V+++A D G + +V N GS Sbjct: 231 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 287 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP + +F RFV + + G G+GLSI LHGG V + G Sbjct: 288 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 341 >gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] Length = 1786 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 15/241 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L E+ E L + K+ F+ ++S+ELR+PL +++ LL + G+LN++Q +Y Sbjct: 1229 ARRGLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLILARLLSDNVDGNLNARQVEYS 1288 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + T LL L+NDILDL+ V+AG M ++ + + + ++ V+ + E ++ Sbjct: 1289 RTIHGAGTDLLQLINDILDLSKVEAGKMDVHVTDVDVTSVVEYVEATFRPLTAEKDLDFI 1348 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------------KAARDNG 717 V D + + +D+ RL Q+ +LSNA+ F+ G +L + + Sbjct: 1349 VSVDPDVPRLLRSDQHRLQQVLRNLLSNAVKFTDSGGVRLLIRNASGERFSTRSLQQADA 1408 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSV + G IP + K +F F R+ G GLGLSI +L GG + + Sbjct: 1409 VLAFSVIDTGIGIPPEKLKVIFEAFQQADGTISRKFGGTGLGLSISREVAHLIGGEIQVK 1468 Query: 776 S 776 S Sbjct: 1469 S 1469 >gi|320324525|gb|EFW80602.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea str. B076] Length = 973 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757 Query: 789 PSKE 792 P E Sbjct: 758 PMHE 761 >gi|298242541|ref|ZP_06966348.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555595|gb|EFH89459.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 593 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 23/251 (9%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSKLGSLNSKQS 607 ++++ + +K+ FV VS+ELR+PLT I G+T L +L L + + Sbjct: 333 SMKQVERLKDEFVSVVSHELRTPLTAIKGYTQHLVRRVERRLRKLRGTPPQLNPLPTPEP 392 Query: 608 ------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + I + + L LVND+LDL+ + G ++L Y L DLLNE +I Sbjct: 393 PESYDLRSLNIIQSQTEHLERLVNDLLDLSQLQWGQLQLQYEEFYLTDLLNEYVHTIQNS 452 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++ + + + + + +ADR+R+ Q+ IL NA+ +S G V ++ R G+F+ Sbjct: 453 AEQHTLYLDIQT--RDTRIIADRKRIGQVIGNILDNAIKYSPNGGKVTVRLQRQQGEFLV 510 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 S+ + G + + +F RF V N Q G+GLGL + I HGG + +++ Sbjct: 511 SIIDEGIGVSLEHYDHIFERFYRVHNTSTQQYSGIGLGLFVTREIITRHGGRIWFTNNQH 570 Query: 780 GVTTINCRIPS 790 TT +P Sbjct: 571 IGTTFYFTLPP 581 >gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and response regulator receiver family [uncultured archaeon] Length = 406 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 19/262 (7%) Query: 546 TDSVRAERALTEKNEALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595 D R + L KN L+KA E +K+ F+ S+ELR+PLT + ++ Sbjct: 134 ADRERVLKELESKNVELQKAMEHMADLEEITRMKSEFLSITSHELRTPLTPMKAQLQMIL 193 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +G LN Q + +E + + T L L++DILDL+ ++AG +KL + + +N ++ E Sbjct: 194 EGYVGELNDNQKKSLEVVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIVKEAI 253 Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713 + + +I I ++D L V D +R+ Q+ +L+NA+ FS K VI++ Sbjct: 254 ITQESSATSKDIEISTKLAD--LPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIETKC 311 Query: 714 ---RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 + +FS+ + G I + K +F F + + ++ G GLGL+IV I+ H Sbjct: 312 LDIEGKENVLFSITDYGIGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGIIHAH 371 Query: 769 GGHVSISSSDEGVTTINCRIPS 790 G V I S TT IP+ Sbjct: 372 RGKVWIDSESGNGTTFYFTIPT 393 >gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 418 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 4/207 (1%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FV +VS+ELR+PLT I GF + L+ L + Q ++++ I++ + L++LV D+L L+ Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGALEDRETAQ-EFLQIIASETERLIHLVEDLLKLS 255 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 ++ L + LN+L++ + + E + +V L + D + L Q+F Sbjct: 256 RLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQVF 315 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749 ++ NA+ ++ G V ++ +G V++ G IP+D VF RF V A Sbjct: 316 VNLIDNALKYTPVGR-VRIRGEYQSGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRARSR 374 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGLSIV+ + LHGG V + S Sbjct: 375 ASGGTGLGLSIVKHIVELHGGKVGVES 401 >gi|52142294|ref|YP_084535.1| sensor histidine kinase [Bacillus cereus E33L] gi|51975763|gb|AAU17313.1| sensor histidine kinase [Bacillus cereus E33L] Length = 458 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1306 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 10/216 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ +IG T LL + L N++Q +VE I S LL ++NDIL Sbjct: 660 KSDFLATMSHEIRTPMNAVIGMTGLLLDTPL---NAEQRDFVETIRNSGDALLTIINDIL 716 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687 D + +++G +L L D L ++ + E I + +I+ + D R+ Sbjct: 717 DFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRV 776 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRF- 742 QI +L+NA+ F+ G V++ R D +F +V++ G IP D +F F Sbjct: 777 RQILVNLLANAVKFTPAGEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFKAFS 836 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V + Q G GLGL+I + L GG + + S+ Sbjct: 837 QVDASTTRQYGGTGLGLAISQRLCALMGGRMWVEST 872 >gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 823 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 9/217 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNL 623 A+ K+ F+ +S+E+R+P+ ++G T+LL LG+ L +QS+YVE + S LL++ Sbjct: 180 ANRAKSDFLAQMSHEIRTPMYGVLGMTELL----LGTDLTKEQSRYVETVRRSGEALLSI 235 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682 +N+ILD + ++AG M+L L L ++ A + + + + G F+ Sbjct: 236 INNILDFSKIEAGRMELETIPFDLRQLASDAAAIFAEDAARKGLELSLELERGLPRMFLG 295 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ +L NA+ F+ KG + LK A + SV++ G I + +FN+ Sbjct: 296 DPGRLRQVMVNLLGNAVKFTLKGGVRLTLKLAEEPALVRISVEDTGIGIAPEARLRIFNQ 355 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R+ G GLGL+I L GG + + S Sbjct: 356 FAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDVES 392 >gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] Length = 1339 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 759 QARQELEARAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTPKQVEY 818 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M +N + L LL+ V + + ++ Sbjct: 819 AGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDATFRPMTTQKSLDF 878 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----------STVILKAARDNGD 718 V + + D RL QI +LSNA+ F+ +G + I R G Sbjct: 879 TVTTAPDAPADLLTDDSRLRQILRNLLSNAVKFTERGGVELRIEPAAGSEIPAGLRRRGA 938 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F V++ G IPE +SVF F R+ G GLGLSI L GG V+ Sbjct: 939 IVAFRVRDTGIGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAVTAE 998 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 999 STPGQGSTFTLYLP 1012 >gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia tasmaniensis Et1/99] gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C) [Erwinia tasmaniensis Et1/99] Length = 951 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 131/252 (51%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ V+ E++L E + +A E K+ F+ VS+ELR+PL IIG DLLKT + Sbjct: 445 LVDVSARVKMEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTK---A 501 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + V ++ SS++LL +++DILD + +++ +K+ +++ + + Sbjct: 502 LPAGAESLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAM 561 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + + + D RL Q+ S +L+NA+ F+ G ++ + GD++ Sbjct: 562 VVKKRLTLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGGIILQVYVK--GDYL 619 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F V+++G I +F+ FV QR +G GLGL+I E +N+ G + + S Sbjct: 620 TFCVRDSGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSE 679 Query: 778 DEGVTTINCRIP 789 + + RIP Sbjct: 680 PDMGSQFVVRIP 691 >gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1896 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 18/261 (6%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + G+L +K Sbjct: 1206 TEVEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAENATGNLTTK 1265 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + I +S T LLNL+ DILDL+ +++G + + I + L + ++++ Sbjct: 1266 QIDFARNIHSSGTDLLNLITDILDLSKIESGTVTVEAEEISFSSLRDAIERNFRHIAEAK 1325 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKA------- 712 N+ ++V L + D +RL QI +LSNA F+++G + L Sbjct: 1326 NVPLEVDFASTLPRAITTDPKRLQQILKNLLSNAFKFTAQGKVAVRVFPALSGWVQGHPV 1385 Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768 +R F++++ G I + K +F F A G R G GLGLSI L Sbjct: 1386 LSRATHVIAFAIQDTGIGIAPEKQKLIFEAF-QQADAGTSRKYGGTGLGLSISRELATLL 1444 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG + ++S+ +T +P Sbjct: 1445 GGEIRLNSTPREGSTFTLYLP 1465 >gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 880 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 131/261 (50%), Gaps = 35/261 (13%) Query: 541 TFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +F N+ D V A+R L E + + AD +K+ F+ +S+ELR+PL IIGF+ +L Sbjct: 603 SFQNLEDLV-AQRTGELREALDRAQAADRLKSQFLASISHELRTPLNAIIGFSTVLLDEL 661 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY-STIVLNDLLNEVKQS 657 L +Q + +E I+ + LL+L+NDILD+A ++AG L+ +T VL V QS Sbjct: 662 SPLLVEEQREDLETINKNGRYLLDLINDILDMARIEAGKFALHREATAVL-----PVVQS 716 Query: 658 IATKMHENN-----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 MH N +RI + D L D RL QI ++SNA+ F+ +G V+ +A Sbjct: 717 AVDIMHGLNSKPVTMRIDIAPD--LPRMDVDPTRLRQIVINLISNAVKFTDRGQIVV-RA 773 Query: 713 ARD--------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 R GD+I SV++ G + + +F F H G R G G Sbjct: 774 IRRVVQEATPIGSHYLLPGDWIVISVQDTGIGMDAEALGKLFQEF-QQVHAGARGILGSG 832 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGLSI ++LH G + + S Sbjct: 833 LGLSITRRLVDLHDGDLWVDS 853 >gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1932 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A R+L EK E L + K+ F+ ++S+ELR+PL +++ LL + +L +KQ +Y Sbjct: 1234 QARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDSNLTAKQVEY 1293 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ LL L+NDILDLA +++G M ++ + I L++L ++++ + Sbjct: 1294 SQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQIAQNKGLTF 1353 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718 V +L + V D +RL Q+ +LSNA F+ +G + ++ A+ + Sbjct: 1354 AVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTERGEVRLRIEVAKPGWNPNQQPLNPA 1413 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G I D K +F F R+ G GLGLSI +L GG + Sbjct: 1414 QNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIK 1473 Query: 774 ISSSDEGVTTINCRIP 789 ++S +T +P Sbjct: 1474 LTSHPGQGSTFTFYLP 1489 >gi|323467274|gb|ADX70961.1| Sensor protein [Lactobacillus helveticus H10] gi|323467317|gb|ADX71004.1| Sensor protein [Lactobacillus helveticus H10] Length = 382 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK+ Q +YV+ + + + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN +++ + +L +V + + I IK+ + K + A Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + L A N + V+NNG IP+ K +F+R Sbjct: 264 DAEKLVRVYNNLISNAFKYGIGATQIKLVANLVNKREVELRVENNGEPIPKKSLKKIFDR 323 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI + ++LH G + SD+ T+ R+P Sbjct: 324 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESDKNWTSFIIRLP 372 >gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 596 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 13/254 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 V +V R +TE++ + D+++ FV +VS+ELR+PL+ + G+++ L G+ + Sbjct: 340 QVVGAVAVLRDVTEEH----RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPD 395 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + + I S + LV D+LDLA ++AG M + + + +N L +++ + Sbjct: 396 ERK-ELAQVIHDESLRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAK 454 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD 718 E IR I + +G D RL Q+ + +L NA + +V L+A Sbjct: 455 EREIRLICELPEGNHLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEA 514 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSIS 775 + V++ G IP + VF RF RG G GLGL+IV++ I+ H G V + Sbjct: 515 VLIEVEDEGQGIPAEDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQ 574 Query: 776 SSDEGVTTINCRIP 789 S TT + +P Sbjct: 575 SILGKGTTFSIFLP 588 >gi|317479496|ref|ZP_07938627.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904316|gb|EFV26139.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 649 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L A+ K ++K+SF+QH+++E+R+PL +I+GF+ LL KL + + +YVE Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + ++T LL+L+ +IL++A +D+ + ++ I ++ E + ++ + + ++ + Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KLGVELEYV 528 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730 + +F A RQ L + +L NA+ F+ +G + + D + F +++ G I Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 D +F RF +G GLGL+I + L GG + + + G P Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645 Query: 791 KE 792 K+ Sbjct: 646 KD 647 >gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 916 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 11/226 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E+ A + K+ F+ +S+E+R+P+ I+G T+LL ++ LN Q ++ E + +S Sbjct: 260 ESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQ---LNRDQQRFAETVQSSGRH 316 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677 LL ++NDILD + +++ M+L L L+ + A + + + + I + Sbjct: 317 LLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRA 376 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPED 733 D RL QIF+ ++SNA+ F+S+G VI +AA + V++ G IP + Sbjct: 377 FMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVEDTGIGIPPE 436 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 K +F +F + Q G GLGL+I + + L GG + I S+ Sbjct: 437 YHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDST 482 >gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 788 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 330 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 390 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 441 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500 Query: 776 S 776 S Sbjct: 501 S 501 >gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] Length = 1390 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 7/245 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606 S R+ A + E L + D K +F ++S+E R+PLT I+G ++L+TS+L + + Sbjct: 331 SARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSEL---DVRV 387 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + +E + L LVN +LD + + AG M+ + + L + E+ + + Sbjct: 388 REELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAG 447 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V DR ++ +LSNA+ F+ +G+ V ++ D+G + +V + Sbjct: 448 LEFTVDCPPLAEPVFVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADT 506 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE +F RF V G G+GL++V+ I LHGG + S + TT Sbjct: 507 GVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGRGTTF 566 Query: 785 NCRIP 789 ++P Sbjct: 567 TIQMP 571 >gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] Length = 842 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 182/394 (46%), Gaps = 57/394 (14%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT----------------HIR 481 + I+ +SE ++ GR+ + N +RS++ E L PG H Sbjct: 453 DAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPA 512 Query: 482 NIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--------------- 525 A R DG W + ER++ +G L + + + Sbjct: 513 PDGAKGVREAEMMDGRWIQIS--------ERRTAEGGLVMTAADITAIKTQEEARRRNEE 564 Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 L+ ++ L +Q L + A + TEK +A A++ K+ F+ ++S+ELR+PL Sbjct: 565 QLQNAVAGLERSQEQLAEL-------ARKYETEKVKA-ESANKAKSEFLANMSHELRTPL 616 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 I GF++++ G L ++ + Y + I +S LL L+NDILD++ ++AG M L + Sbjct: 617 NAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 676 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++ L D+ + + + + +++ I +L AD + + Q+ +LSNA+ F+ Sbjct: 677 SMHLEDVAEDAVRLVRNRAEAAGLKLD-IDFPQLPEIEADYRAVKQVLLNLLSNAIKFTP 735 Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 + +V ++ RD GD I SV + G I ++ + F V + +G GLG Sbjct: 736 RAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLG 795 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 L++ +S I +H G + + S+ TT++ +P + Sbjct: 796 LALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829 >gi|83955464|ref|ZP_00964095.1| hypothetical protein NAS141_19474 [Sulfitobacter sp. NAS-14.1] gi|83840108|gb|EAP79283.1| hypothetical protein NAS141_19474 [Sulfitobacter sp. NAS-14.1] Length = 608 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 13/261 (4%) Query: 532 PL-PNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPL 584 PL PN + +T V++TD + RAL +AL +ADE K+ F+ VS+ELR+PL Sbjct: 310 PLDPNGAILGWSITLVDITDRIVITRAL---EDALLRADEANRAKDEFISVVSHELRTPL 366 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 T++ G L + +LG ++++ +E + L LV++IL +D + L+ Sbjct: 367 TSLKGGLALALSGRLGEIDARIRSPLEIAQRNGMRLSRLVDNILLAQKIDVDALSLDALP 426 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + L LL E + E I + + + + D L QI ++SNA+ FS + Sbjct: 427 VDLGALLKESLEENKMFAAEQKIDLVLPKGDQTATITGDAFALRQIIDNLVSNAIKFSEQ 486 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 GSTV + NG S+K++G IP+ M VF RF V N + +G GLGL I + Sbjct: 487 GSTVEGSLSIRNGHVRLSIKDSGRGIPDGMEGQVFGRFEQVKNGGQYATQGSGLGLHISQ 546 Query: 763 SFINLHGGHVSISS-SDEGVT 782 G + S EG T Sbjct: 547 QLARQMSGKLFYDSVVGEGTT 567 >gi|298241186|ref|ZP_06964993.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554240|gb|EFH88104.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1221 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR+PL + T L++ + + + + + Sbjct: 987 NSARKELEQRKDDFISMASHELRNPLAALKMQTQLVRKRLEKQSHHEAATALFRMEGPVK 1046 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ ++LD++ + AG ++ T+ L+ LL+EV ++ + I V+ Sbjct: 1047 QLERLIGELLDVSKIQAGKLEYRQETVDLDALLHEVADTMQQLSTTHAI---VVRGAAPS 1103 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S V D+ RL Q+F+ ++SNA+ +S V + I V ++G IP++ C + Sbjct: 1104 SLVGDKDRLGQVFTNLISNAIKYSPGAEMVEMDLDASPETAIIRVHDHGLGIPQEQCDKI 1163 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF Q+ G+G+GL IV + HGG +++ S +T +P K Sbjct: 1164 FERFYRATGPKQKAIPGLGMGLYIVAEIVKRHGGAITVDSEVGKGSTFTVTLPCK 1218 >gi|289673699|ref|ZP_06494589.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. syringae FF5] Length = 622 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ LG N + Sbjct: 148 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 203 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 204 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 263 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 264 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 322 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 IP + +F R+ S G RG GLGL I + I HGG + SS D G Sbjct: 323 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSG 374 >gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1815 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1324 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLSPKQVEFA 1383 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1384 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1443 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1444 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNSIREHLLEA 1503 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1504 GSLHDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1563 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1564 LLGGEIHAASEPGRGSTFTLYLP 1586 >gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1476 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 939 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--KLSPKGLQYVDLMEKNTNQMLQ 996 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S I N+++ ++ EN + + A Sbjct: 997 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEVSFTFQLPDESIMVWA 1056 Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 D+++L + I+SNA F+ S GS + D+G F V++NG IP+ +F Sbjct: 1057 DKEKLSIVIRNIISNAFKFTHSGGSIYVTTGLTDDGKRCFVRVEDNGEGIPQSKLTEIFE 1116 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF N +G G+GL++ + +NLH G + + S EG Sbjct: 1117 RFSQGENTKNPYYQGTGIGLALSKEIVNLHHGSI-YAESPEG 1157 >gi|190571186|ref|YP_001975544.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357458|emb|CAQ54892.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 475 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASST 618 EAL + + K F V++ELR+PL IIGF L+K LGS++ SK +YV+ I + T Sbjct: 231 EALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGT 290 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677 LL L+ND+LD + ++ + + LN +++ + ++ K+ E I +K ISD +L Sbjct: 291 HLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQL 350 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMC 735 +AD +R+ Q+ +LSNA+ F+ +G + I+K + +NG I + Sbjct: 351 -LVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDI 409 Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 V + F A G R G G+GL + + + L GG +I S + TTI Sbjct: 410 YKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTI 458 >gi|325684937|gb|EGD27081.1| sensor histidine kinase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 402 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610 RA+ E+ + ++ K+ + +VS+++R+PLT+IIG+ LLK G++ S++ +Y+ Sbjct: 155 RAINEE----KAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYI 207 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + + +L ND+ + T+ + KLN + I + ++ +V + + I Sbjct: 208 NIAYDKAEQMRSLANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFS 267 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729 V + AD ++L+++++ ++SNA+ +++ S + L A N + + V+NNG Sbjct: 268 VKARPDDLIVNADVEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEP 327 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 IP+D K +F+RF V ++ + G GLGLSIV+ + LHGG + S+ + Sbjct: 328 IPKDKLKKIFDRFYRVESSRNTKTGGTGLGLSIVQGAVELHGGTIRCESNKD 379 >gi|320328898|gb|EFW84897.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 973 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757 Query: 789 PSKE 792 P E Sbjct: 758 PMHE 761 >gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] Length = 1005 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 A +KA+E K++F+ ++S+E+R+PL +IG T LL + L+ Q +Y I S Sbjct: 770 ARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNT---PLDKSQEKYANRIDLSG 826 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 +LL ++NDILD + ++AG + L L +++ EV + + K E + +++ + Sbjct: 827 KVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLNLEISYAHDT 886 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 + D R+ Q+ + SNA+ F+ +GS V +K + FI V + G IP++ Sbjct: 887 PKHLIGDPTRIRQVIMNLTSNAIKFTQEGS-VAIKVSNPKKAFIRVEVTDTGIGIPQEKK 945 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F +F R+ G GLGL+I + I + G + S + +T IP Sbjct: 946 MHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFWFEIP 1001 >gi|255035539|ref|YP_003086160.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948295|gb|ACT92995.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1344 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 557 EKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 EK EALR + DE+K+ F ++++E R+PLT II + L K G+++ Q + I Sbjct: 833 EKREALRLKEMDELKDRFFSNITHEFRTPLTLII--SPLQKLLSEGAVSGPIRQTLRGIE 890 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL LVN+ LD + ++ G M++N S L ++ +S E I + S Sbjct: 891 KNSRQLLGLVNEFLDFSKLNDGQMQVNRSAGELAPFVSAHVRSFEAAASEKQITLSFASG 950 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPED 733 G ++ D+++ +I +L NA+ F+ + + + + +GD + V +NG I D Sbjct: 951 DVEGFYLFDQEKWSKIVINLLGNALKFTPEKGAISVGLRQASGDCIVLEVWDNGPGIATD 1010 Query: 734 MCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF +A R Q G G+GL++V+ + + GGH+ + S +P Sbjct: 1011 QQERIFERFYQVDGSAIRSQ-GGTGIGLALVKEMVGVMGGHIQVDSEPGKYARFCVELP 1068 >gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall] gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 464 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|153216224|ref|ZP_01950328.1| sensor histidine kinase FexB [Vibrio cholerae 1587] gi|124114411|gb|EAY33231.1| sensor histidine kinase FexB [Vibrio cholerae 1587] Length = 604 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725 + L S V D RL Q+ +LSNAM F+ +G V+ +A + + V++ Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE + +F + S G G+GL++ I L GG +S+ +S+EG Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 16/251 (6%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TM+T + E+ L + +A ++ IK F VS+ELR+PL +IG +LL + Sbjct: 247 TMMTVLEAR-----EQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNT 301 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L Q +YV+ S LL+L+ +ILD + +++G KL+ L + L++V Sbjct: 302 EL---TPNQREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGL 358 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 +A + ++ I + + F+ D R+ QI ++ NA+ F+ +G I L+ Sbjct: 359 LAAQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEK 418 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 F V++ G IP + VF F R+ G GLGL+I ++L GG Sbjct: 419 KAKKLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478 Query: 771 HVSISSS-DEG 780 + + ++ D+G Sbjct: 479 DLGVENNLDKG 489 >gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23] Length = 500 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670 IS +S L+ L++DILDL+ +++ +K YS L ++ ++ K+ + + E I IK Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 373 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727 I D RL Q+ ++NA F+ +G ++ D+ +F V++ G Sbjct: 374 AILPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 432 Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ K +F+RF N ++G GLGLSI ++ + G +S+ S Sbjct: 433 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 479 >gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 473 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 141/273 (51%), Gaps = 10/273 (3%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL---RKADEIKNSFVQHVSYELRSPL 584 Y I L + ++ + +++ S+ ++ ++EK + + R+ ++++ F ++S+EL++PL Sbjct: 163 YYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPL 222 Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST---ILLNLVNDILDLATVDAGIMKL 640 I+G L K N + + + I+ LL L+N+++D +D+ ++L Sbjct: 223 NIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIEL 282 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N + +L+ E+ QS+A K NNI I +D + D ++ +I +LSN++ Sbjct: 283 NMVNCNIVNLVEEITQSVA-KYINNNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVK 341 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 F+ G ++ + D +VK+ G IP++ ++F+RF V + + G G+GL Sbjct: 342 FTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGL 401 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SIV+S + +H G + + S T ++P+K Sbjct: 402 SIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAK 434 >gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 872 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 122/236 (51%), Gaps = 8/236 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +A A+ K+ F+ +S+ELR+PL I+GF+ L+ + L+ Q + + I+ S Sbjct: 405 RDAAEAANRAKSVFLSSMSHELRTPLNAILGFSALMSRDTM--LSHIQRENLNIINRSGE 462 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+L+ND+L++A ++AG +++ + L L+ +V +A + E +++ V Sbjct: 463 HLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSDFP 522 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSI-PED 733 ++ D RL Q+ ++ NA+ F+ G + + N + V+++G I PED Sbjct: 523 RYIMGDEARLRQVLINLVGNAVKFTQHGGITMRFGIKPNLLPERLLIEVEDSGIGIKPED 582 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+ FV ++G GLGL+I F+ L GG +++ S+ + +P Sbjct: 583 QQR-IFDAFVQIGDLSAQKGTGLGLTITRQFVQLMGGVITLESTPGVGAVFSVELP 637 >gi|213018588|ref|ZP_03334396.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995539|gb|EEB56179.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 444 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASST 618 EAL + + K F V++ELR+PL IIGF L+K LGS++ SK +YV+ I + T Sbjct: 200 EALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGT 259 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677 LL L+ND+LD + ++ + + LN +++ + ++ K+ E I +K ISD +L Sbjct: 260 HLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQL 319 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMC 735 +AD +R+ Q+ +LSNA+ F+ +G + I+K + +NG I + Sbjct: 320 -LVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDI 378 Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 V + F A G R G G+GL + + + L GG +I S + TTI Sbjct: 379 YKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTI 427 >gi|30026146|gb|AAO47030.1| ethylene receptor [Arabidopsis thaliana] Length = 505 Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714 + I + L F V D +RL+QI I+ NA+ FS +GS ++ K+ Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304 Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 DF VK++G+ I P+D+ K +F +F R G GLGL+I Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363 Query: 761 VESFINLHGGHVSISSSDEG 780 + F+NL G++ I S G Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383 >gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437] Length = 463 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 +L + + ++ FV +VS+E++SPL +I GF+ L+T L ++ QY+ I S L Sbjct: 232 SLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTLRTESLP--EEEREQYLSIIENESRRL 289 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L +L LA++D L+ + + + EV + + + + IK +D Sbjct: 290 SSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDKELAIK--TDLPPTRI 347 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739 AD + L Q+++ +L+NA+ F+ G T+ + + G V++ G IP + +F Sbjct: 348 RADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVRDTGVGIPGEDLPHIF 407 Query: 740 NRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF S + +G+ G GLGLS+V+ ++LHGG +S+ S T I +P K Sbjct: 408 ERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGAGTGIRVWLPGK 463 >gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] Length = 915 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 13/233 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASS 617 N+ ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ Sbjct: 273 NKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSA 328 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 LL ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 329 NNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHINNDV 388 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPE 732 V D RL QI + +L NA+ F+ +G+ IL A + + + + G I E Sbjct: 389 PEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTGIGISE 448 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F F RR G GLGL I E + GG +S +S D G T Sbjct: 449 SQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGST 501 >gi|168211770|ref|ZP_02637395.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|170764305|ref|ZP_02640759.2| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] gi|170710282|gb|EDT22464.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|170713459|gb|EDT25641.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] Length = 821 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%) Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487 +++G T +++ + + +G+I N A + E L + N+ Sbjct: 434 RLRGVT-ENIKDLIFTIDFEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546 S+Y+NE I+T D+ +S +G ++L S S S I N L +V V Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538 Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603 + VR L K E +++ D++++ F ++S+ELR+P+ I LL TSK N Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598 Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Y + + + +L LVN+++D+ +D+G +K+++ + L ++ S+ + Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I ++ + D ++ +I +LSNA+ F+ G + + D Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK+ G IP M + +F RF+ N R G G+GLS+V+S + LH G V + S+E Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778 Query: 781 VTTINCRIPS 790 + + +P+ Sbjct: 779 GSEFSILLPN 788 >gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1] gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1] Length = 1937 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L KQ ++ Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+A+ T LL+L+NDILDL+ +++G + L + L D+ + ++ E ++ Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + + G S D +RL Q+ +LSNA F+ KGS V LK G Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I ED + +F F R+ G GLGL+I L GG + + S Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465 >gi|160880259|ref|YP_001559227.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160428925|gb|ABX42488.1| integral membrane sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 464 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 +L K + I+ VS+ELR+PLT I + + + E I+ + Sbjct: 238 SLEKQEGIRKQLTSDVSHELRTPLTTIGTHIEAMIEGVWEPTTERLKSCYEEINR----I 293 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 NLV D+ LA V+ +KLN +++ + ++++ +K + T+++ ++ + VI G + Sbjct: 294 TNLVKDLEQLAKVENDNLKLNITSVNILEVIDTIKDNFETEIYNKSLDVSVI--GTASTI 351 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D++R+ Q+ +LSNA+ ++ +++ + + +K+NG IPE+ +F Sbjct: 352 LVDKERISQVIINLLSNAIKYTPDFGKIVISLEDYETNLVIQMKDNGIGIPEEELPFIFE 411 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF RR G G+GL+IV+S ++ HGG V +SS E T +P K Sbjct: 412 RFYRADKSRNRRTGGAGIGLAIVKSVVHSHGGKVEVSSKLETGTVFRVILPRK 464 >gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 929 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 6/246 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E L K EA R A+ K+ F+ +S+ELR+P+ I+GF LL+T + + Q+ Sbjct: 545 RTELLLKAKEEADR-ANNAKSEFLSRMSHELRTPMNAIMGFAQLLETDRETPITLDQADN 603 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I + LL L+N++LDLA ++ G ++L+ + + L+ E + I + Sbjct: 604 VREIRHAGQHLLELINEVLDLARIETGRIELSLEPVEVPLLIGECMALLQPLTLGRRIEL 663 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGS 728 K+ DG G+ ADR RL QI +LSNA+ ++ +G+ I G +V ++G Sbjct: 664 KLDIDGT-GTVQADRLRLRQILLNLLSNAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGR 722 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D +F F + +A+ G G G+GL++ + + GG + + S +T Sbjct: 723 GIAVDAMTRLFKPFERIESAYDGI-EGTGIGLALSKRLVEAMGGTIGVESVVGAGSTFWV 781 Query: 787 RIPSKE 792 +P+ E Sbjct: 782 ELPAAE 787 >gi|91780564|ref|YP_555771.1| multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91693224|gb|ABE36421.1| Multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1344 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 13/243 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD + L E+ E L +AD KN F+ + +ELR+PL + DLL + +++ Sbjct: 955 LTDRSLSNAQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSSGDLLASE---TIDP 1011 Query: 605 KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660 +Q + V I + LVN++LDL + +G ++L + L ++ EV Q I Sbjct: 1012 RQKSWAVGVIQRQGRSMTQLVNEMLDLTRITSGSIELRRQAVTLKAVIQSAVEVCQPIID 1071 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + H + + + + + L D RL Q+ I+ NA ++ G + L A R Sbjct: 1072 ERH-HTLSVSLPDEPVL--MYVDPTRLSQVVENIVINAARYTEPGGHISLTATRTGRRLS 1128 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQ-RRGVGLGLSIVESFINLHGGHV-SISSS 777 VK+NG IP M ++F+ FV GQ G+G+GLS+V + LHGG V +IS Sbjct: 1129 LRVKDNGRGIPASMLSTLFDMFVQGPVPYGQLHNGLGVGLSVVRRLVELHGGSVRAISDG 1188 Query: 778 DEG 780 G Sbjct: 1189 RTG 1191 >gi|325958802|ref|YP_004290268.1| PAS/PAC sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] gi|325330234|gb|ADZ09296.1| PAS/PAC sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] Length = 605 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 9/254 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F++VT +AE + + L +++ F S++L+ PL I FT LL+ G Sbjct: 356 AFMDVTKRKKAEMQMASLLKELERSNRELEQFAYVTSHDLKEPLRMISSFTKLLEQKFKG 415 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ Y+ YI + + L++D+L + + + Y + L +++NE ++ Sbjct: 416 QLDEDADNYINYIVDGTKRMQRLLDDLLAYSRISNEV---KYEPLKLTEIVNESIHNLKV 472 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-F 719 + EN I V L VA+R +++Q+F +++NA+ F SK VI + ++G+ + Sbjct: 473 AIDENQAEITV---DPLPEVVANRTQMIQLFQNLIANAIKFQSKKKPVIHVSCEESGNKY 529 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778 FSV++NG I VF F + G G+GLSI + + H G V + S D Sbjct: 530 YFSVQDNGIGIDSKNLDRVFKMFQRLHTADEYDGTGIGLSITKKIVQQHSGAVWVESKLD 589 Query: 779 EGVTTINCRIPSKE 792 EG +T IP E Sbjct: 590 EG-STFYFSIPIDE 602 >gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 500 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670 IS +S L+ L++DILDL+ +++ +K YS L ++ ++ K+ + + E I IK Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 373 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727 I D RL Q+ ++NA F+ +G ++ D+ +F V++ G Sbjct: 374 AILPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 432 Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ K +F+RF N ++G GLGLSI ++ + G +S+ S Sbjct: 433 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 479 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 11/250 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V++TD RAER L E + +K++F+ ++S+E+R+P+ IIG + L S Sbjct: 847 TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 903 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q+ YV I + LL ++NDILD + ++AG + + +L+ +L + + Sbjct: 904 GLTPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGY 963 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718 K + + + ++ V D RL QI +NA+ F+ +G V ++ +G Sbjct: 964 KAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGR 1023 Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + F V++ G + + +F F RR G GLGL+I ++ L GG V Sbjct: 1024 RVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVG 1083 Query: 774 ISSS-DEGVT 782 S+ EG T Sbjct: 1084 AESAVGEGST 1093 >gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain [Bacteroides thetaiotaomicron VPI-5482] gi|29337316|gb|AAO75121.1| rteA, two-component system histidine kinase, with response regulator receiver domain [Bacteroides thetaiotaomicron VPI-5482] Length = 807 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 16/207 (7%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVD 634 ++++LR+PLT I G+ +LL G ++ K+ +Y +I SS ++ LVN +++ +D Sbjct: 335 IAHDLRAPLTAIKGYAELLP----GEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLD 390 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVADRQRLLQ 689 AG K+N + L +E+ K+H ++R + ++ +G DR R++Q Sbjct: 391 AGKGKMNVTVFRPLSLFDEI-----VKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQ 445 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 I + +LSNA+ F+ KG + L+AA G+ FSV++ G + ED K +F F + Sbjct: 446 IANNLLSNAIKFTRKGK-ISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNAR 504 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV L GG +++ S Sbjct: 505 YLPGFGLGLAIVSRLTELLGGRITVES 531 >gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1299 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 8/243 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQY 609 AER + EAL + D K +F ++S+E R+PLT ++ D+L + G L ++Q Sbjct: 344 AER---RRAEALAEIDRAKTTFFSNISHEFRTPLTLMLSPLEDMLARADAG-LGAEQLAM 399 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + LL LVN +LD + ++AG M ++ + L L +E+ + + +R+ Sbjct: 400 LNLIHRNGIRLLKLVNTLLDFSRIEAGRMTASFEPVDLAALTSELVSNFRSATDRAGLRL 459 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728 + + DR +I +LSNA F+ G +V + A D F+V + G+ Sbjct: 460 AIEAAPLPQPVYVDRDLWEKIVLNLLSNAFKFTFDGGISVTIGIAADMRHAEFAVHDTGT 519 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP D +F RF V+ A G G+GL++V+ + LHGG ++ S + Sbjct: 520 GIPPDELPHLFERFRRVAGARGRSYEGSGIGLALVQELVKLHGGEITADSELGRGSVFTV 579 Query: 787 RIP 789 R+P Sbjct: 580 RLP 582 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 34/237 (14%) Query: 555 LTEKN---EALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 LTE+ EA R+A +++ V+++ + LT I DLL+ +L + +Y Sbjct: 911 LTERRQAEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRQLPP--ERMRRY 968 Query: 610 VEYISASSTILLNLVNDILDLA---TVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMH 663 V+ IS ++ L +L A ++ + + ++L V IA + Sbjct: 969 VDAISDTADRAAKLTGQLLAFARRTPMERQVFDAARHLEQIAEMLQTVLGAPAVIALDLR 1028 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNG----- 717 + + V D + +++NA D + ++ R D+G Sbjct: 1029 ARPLPVDV-----------DINQFDTALVNLVANARDAMDGRGVLTIRGERVDHGGPTAP 1077 Query: 718 -DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F+ +V + G IP + +F F + +G RG GLGLS V F++ GG V Sbjct: 1078 EQFVSIAVSDTGCGIPPEQLDRIFEPFFTT--KGVGRGTGLGLSQVYGFVHQSGGRV 1132 >gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli HS] gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli HS] Length = 778 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG + ++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIKVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 597 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 7/248 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V +V R +TE+ R D+++ F+ +VS+ELR+P++ + G+++ + + S Sbjct: 348 HVRGAVAVLRDMTEE----RLHDKLRKDFIANVSHELRTPISMLQGYSEAI-IDGIASSE 402 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++++ + I S + LVN++LDLA ++AG ++LN TI D V + Sbjct: 403 EEKTELAQIIYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAK 462 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 E+ I++ + + AD R+ Q+ + ++ NA+ + +G V L+ + ++ Sbjct: 463 EHGIKLSGDIEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQGVKVNI 522 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G I E+ VF RF A R G GLGL+IV++ + H G VS+ S Sbjct: 523 QDTGIGISEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEG 582 Query: 782 TTINCRIP 789 TT + +P Sbjct: 583 TTFSFFLP 590 >gi|254696347|ref|ZP_05158175.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 256 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 94/194 (48%) Query: 27 FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86 F G + ++ LIR R+ +A + NE S +++ + +LL + +VW Sbjct: 63 FSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNLIAQRNEALLNMKDQRIVVW 122 Query: 87 DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146 DG + +++GQL PQ L+F WL+ L +A LR++ ++FDL E Sbjct: 123 DGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVE 182 Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206 T N + + GR SG A SL G+ +E A + ++L++ I + + L D ++ Sbjct: 183 TVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPA 242 Query: 207 WHRDQAGDILWANI 220 W RD G I W N+ Sbjct: 243 WLRDGNGRIEWVNL 256 >gi|238062161|ref|ZP_04606870.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149] gi|237883972|gb|EEP72800.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149] Length = 1455 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L +K + L +A K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1027 ARLGLEDKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENSEQNLTPKQIEFA 1086 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S + LL L++DILDL+ ++AG M + + + ++ V+Q+ A + E + + Sbjct: 1087 RTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVQFAEIRGYVEQAFAPQAEEKGLDFQ 1146 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719 V+ +L + V D QRL QI +LSNA+ F+ G+ T+ + A +N F Sbjct: 1147 VLLAKELPPALVTDAQRLQQILRNLLSNAVKFTDSGAVTLRIAPAPENVVFDVPALINAR 1206 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I +D +F F RR G GLGLSI L GG +++ Sbjct: 1207 QVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGSITV 1266 Query: 775 SSSDEGVTTINCRIP 789 SS+ +T +P Sbjct: 1267 SSAPGEGSTFTLYVP 1281 >gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 891 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 16/249 (6%) Query: 547 DSVRAERALTE-----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++ +ERA+ E E +A+ K++F+ ++S+E+R+PL IIG + +L +KL Sbjct: 356 NALISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILSETKLTP 415 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q Y+ I SS LL L+NDILD++ +++G + L+ + L +++ + I +K Sbjct: 416 I---QHDYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDTVSIIISK 472 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 +E ++ + + I S + D RL QI + SNA+ F+ KG + K + Sbjct: 473 ANEKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPKGHVQLDVEFTKKENNT 532 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + SV ++G I ++ S+F FV R+ G GLGL+I + ++L G ++ Sbjct: 533 VELTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVDLMDGEFTV 592 Query: 775 SSSD-EGVT 782 S+ EG T Sbjct: 593 KSTKGEGST 601 >gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 1129 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 3/239 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ AD++K+ F+ S+ELR+PL +IG + L + G + + Q ++ Sbjct: 444 KLIQKQNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGANGGIPASQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G M + S + L V + + + IRI Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLELSSHLLGNKTIRIINQ 563 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L + AD QRL Q+ ++ NA+ +S+G VI D V + G IP Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKHTSEGKIVISANIIDE-QVRVQVVDTGQGIPA 622 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + +F + R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 EYLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLYVSSQPMVGTTFSFTLP 681 >gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502] gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] Length = 464 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|117618906|ref|YP_855570.1| response regulator/sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560313|gb|ABK37261.1| response regulator/sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1142 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 14/230 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+P+ IIG + L+ + SL+ +Q Q V I+ + LL L+ ++L Sbjct: 562 KADFLATMSHEIRTPMNGIIGMAEQLRFT---SLDPEQRQMVGIINQGAEGLLQLIGNVL 618 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D + +DAG M L ++ +L +L++ V ++++ +++ + D ++G+ F D RL Sbjct: 619 DYSKLDAGKMALAPTSFLLRELIDSVLTMTSSELQRKGLQLYLRVDDEVGARFYGDVLRL 678 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741 Q+ + SNA+ F+ +G I + R G+ + V++ G + ED+ VFN Sbjct: 679 KQVLFNLASNAIKFTERG--FIELSIRVEGETDEEQWLLLGVQDTGIGMSEDVQARVFNA 736 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F A G GLGLSI ++ L GG + + S+ T I IP Sbjct: 737 FEQADGATTRSYGGTGLGLSISQTLATLMGGRLRLESAPGLGTHIGLSIP 786 >gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 592 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 163/340 (47%), Gaps = 32/340 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + +GV +GR+ L NPA + ++ +E + I S +N L + Sbjct: 263 MVDGVIATDSEGRVSLINPAAQKIFNIDEQAIKGKNLI-------SSLFNHRLDMYLQRS 315 Query: 503 IITSFDDERKSLQGTL--ELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEK 558 + DE++S+ + + +++ + IPL N + +TD +TE Sbjct: 316 L-----DEKESISREIIYQNPDKKIIQTTFIPLLGDNKDINGGVIVLTD-------ITE- 362 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 LRK + ++N FV +VS+ELR+PLT+I+G+ D L S + +K+ ++++ I + Sbjct: 363 ---LRKLETVRNDFVANVSHELRTPLTSILGYLDTLLESDIEDQKTKE-KFLKIIKEETN 418 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ D+L+L+ +++ +L Y L +V + +I I + + L Sbjct: 419 RLSLLITDLLNLSKIESQSFEL-YPGDFLK-TFQKVYHLLEKNAQLKDININLEIEDDLP 476 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 R+++ Q+ ++ NA+ +SS G T+ + + + F +++NG IP D + + Sbjct: 477 QVYMVREQVEQVLINLIDNAIKYSSSGGTINISVQKKSDKLYFEIQDNGIGIPVDEQERI 536 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V A + G G+GLSIV + I HG + + S Sbjct: 537 FERFYRVDKARSRELGGTGIGLSIVRNIIKQHGSEIKVES 576 >gi|229103766|ref|ZP_04234446.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28] gi|228679642|gb|EEL33839.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28] Length = 448 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G TV I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447 >gi|119503200|ref|ZP_01625284.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2080] gi|119460846|gb|EAW41937.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2080] Length = 664 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 ++EA AD K SF+ ++S+E+R+P+ ++G L+K ++ L+ +Q Y + I S+ Sbjct: 245 RDEAQHVAD-TKTSFLANMSHEIRTPMNGVVGMISLIKETE---LSKRQRVYFDTIEKSA 300 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK 676 LL +++DILD +++G +++ + L+DLL + + ++ +++S DG Sbjct: 301 AGLLVVIDDILDFTKLESGHLRIRTAPFSLSDLLATLNTIFEMQAANKGLKFQLVSADGL 360 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPED 733 + D RL Q+ ++ NA+ F+ +GS +L A I F V + G IPE+ Sbjct: 361 PDRVIGDPARLRQLLLNLIGNAVKFTDEGSVELLVTPIAESEASLIRFEVVDTGIGIPEE 420 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 +F F R G GLGL++ L GG VS SS++ Sbjct: 421 KQPGIFKEFYQVDITSTRAYGGTGLGLALCRELAQLMGGSVSFSSTE 467 >gi|323482860|ref|ZP_08088261.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323403785|gb|EGA96082.1| sensor protein [Clostridium symbiosum WAL-14163] Length = 374 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 6/240 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN+ + R L +K R+A+ KN + +V+++LR+PLT+IIG+ +LL + K+ Sbjct: 117 VNLNKMMEDIRRLMDKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKVQIP 172 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y++ A S L L+ D+ ++ G M ++ + + LL+++ + Sbjct: 173 QEMQKKYIDIAYAKSKRLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSF 232 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ ++ S+ AD L ++F +++NA+ + + G V++K S Sbjct: 233 VDKNLSYELQSNVPGKVITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEPTVTVS 292 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V N G IP D +FN+F V + G GLGL+I ++ +++HGG + ++S G Sbjct: 293 VTNYGYVIPADELPLIFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLNG 352 >gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA206] gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3] gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli TA206] Length = 778 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQLVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10] gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10] Length = 1104 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 5/236 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E E LRKAD +KN F+ S+ELR+PL +IG + LK G ++ I AS Sbjct: 423 EALENLRKADALKNEFLAVTSHELRTPLYGMIGIAESLKEGAAGEPPEDMKDQLDTIVAS 482 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L +L+NDILD + + G ++L+ + + L + V + + +++ Sbjct: 483 GNRLAHLINDILDFSKLKHGSLRLDVKAVDVKHLASFVTAVTGPLIAGKPVLMQIDMPDD 542 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 L AD R+ Q+ ++ NA+ F+ KG + +A+ G F+ V + G IP+ Sbjct: 543 LPRVKADPNRIQQVLYNLVGNAIKFTEKGRITL--SAKAAGKFVTVRVSDTGIGIPKQER 600 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F+ FV R G G+GL+I + + LH + + + E + +P Sbjct: 601 DAIFDPFVQVDQLSDHRPDGTGIGLTITKQLLELHDSRLEVDTDTEEGASFFFALP 656 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 122/247 (49%), Gaps = 14/247 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 ALT N++L A++ + + ++++EL +P+ I + +++ + G + Y + + Sbjct: 843 ALTRANKSLVAAEDARKQLLSNIAHELGTPVALIHSY---MQSVRAGLIAMDDPYYHQQV 899 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 IL L++D+ DLA + L T ++D L +V ++ ++ +++ R + Sbjct: 900 EKKIQILNRLISDLFDLARFEQDHKILQRETFSVSDWLTKVDETCRFEVTQHHRRYEGPE 959 Query: 674 DGKLGSFV------ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVK 724 G + D +R+ Q+ S ++ N++ F+++ I A + + + Sbjct: 960 IGAFEPYKREWYCHVDVERMDQVLSNLIVNSVKFTTEDDGTIRITAEWDLNERKLVIGIH 1019 Query: 725 NNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +NG+ IP++ +F+RF + H G + +G GLGL+IV+ I HGG V ++S T Sbjct: 1020 DNGAGIPKEAVPFMFDRFYRAGDHSGFKPKGSGLGLAIVKQIIESHGGEVDVTSEQGKGT 1079 Query: 783 TINCRIP 789 + +P Sbjct: 1080 SFFITVP 1086 >gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1407 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 13/236 (5%) Query: 551 AERALTEKNEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 A++++ E+ L A++ K+ F+ +S+E+R+PL +IG T LL+ + L+ +Q + Sbjct: 874 AQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDT---PLSEEQRE 930 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I + LL ++NDILD + +++G M+L I L L EV A K + + Sbjct: 931 YAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLD 990 Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG--DFIFS 722 + D + + D RL QI ++ NA+ F+ +G ++ L A R + + F+ Sbjct: 991 LIYQIDPLVPPQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRPDQAVELAFT 1050 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G IP +F F V ++H Q G GLGL I + I L GG + + S Sbjct: 1051 VRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRVES 1106 >gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 753 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 10/212 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ ++G LL+ ++L + Q Y + I +S+ LL L+NDILDL+ Sbjct: 380 FLANMSHEIRTPMNGVMGMAQLLEETEL---DEDQRLYTDTILSSARTLLALINDILDLS 436 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 +DAG ++LN + L + + + + + + L + + D R+ QI Sbjct: 437 KLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNRIKQI 496 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++ NA+ F+ +G +I A+ + D FSVK+ G I ED +F RF Sbjct: 497 LINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERFTQAD 556 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGLSI +NL G +S++S Sbjct: 557 AAINRRYGGSGLGLSISRHLVNLMEGEISVAS 588 >gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 952 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 12/255 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + A+ K++F+ +VS+ELR+PL ++GF L+ S+ +L Sbjct: 464 DITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLM--SRDDNLT 521 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Q +Y+ I+ +S LL+L+N++LDLA +++G + + + LL +++ + Sbjct: 522 ATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRRLLADLQALFGPQAE 581 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +++ V + ++ V+D ++ I +L NA+ F+ GS V L+A D F Sbjct: 582 AKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTHGGS-VRLRADTDKQQMYFI 640 Query: 723 VKNNGSSIPEDMCKSVFNRFVSN---AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I +F F A+ GVGLGLSI F L GG +S+ S+ E Sbjct: 641 VEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFARLIGGDLSVYSAGE 700 Query: 780 G-----VTTINCRIP 789 G T+ R P Sbjct: 701 GQGARFTLTLPLRTP 715 >gi|323967240|gb|EGB62664.1| TMAO reductase sytem sensor TorS [Escherichia coli M863] Length = 914 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ + IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLLEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 1370 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ + EK + L A + K+ F+ ++S+ELR+PL +I+ + L +K G+L +KQ + Sbjct: 650 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 709 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665 + I++S + LL+L+N+ILDL+ V+AG + L+ + L DLL + Q IA + Sbjct: 710 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 765 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712 + +VI L + D QRL QI +L+NA F+ +G+ +L Sbjct: 766 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 825 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 R+ FSVK++G I ++ ++F F R+ G GLGLSI + +L GG Sbjct: 826 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 884 Query: 771 HVSISSSDEGVTTI 784 + + S+EG +I Sbjct: 885 RIHL-KSEEGKGSI 897 >gi|228945525|ref|ZP_04107875.1| hypothetical protein bthur0007_16850 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814043|gb|EEM60314.1| hypothetical protein bthur0007_16850 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 326 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 135/246 (54%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 79 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 137 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 138 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 197 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + D +L + D ++++F ++SN++ + G +++ ++ + + VKN Sbjct: 198 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIEVKN 256 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I S LH G +++ S++ Sbjct: 257 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEK 312 Query: 779 EGVTTI 784 E + TI Sbjct: 313 ETIFTI 318 >gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] Length = 701 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 3/236 (1%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD + L + KA K+ F+ +S+ELRSPL I+GF L+++ + Sbjct: 285 DVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESESPPPTD 344 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S++ + + A LL L+N+ILDL+ V++G + L+ ++L++++ E + + + Sbjct: 345 SQKESIAQILQAGWH-LLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQSMVEPQAQ 403 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722 E IR+ ADR R+ QI +L+NA+ + S+KG + G S Sbjct: 404 ERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESAPGRLRIS 463 Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +K++G+ + + + +F F G G G+GL + + + L GG + SS Sbjct: 464 IKDSGAGLTPEQLEQLFEPFNRLGQENGSEEGTGVGLVVSKRLVELMGGTIGAESS 519 >gi|293372698|ref|ZP_06619080.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632507|gb|EFF51103.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 810 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 114/194 (58%), Gaps = 8/194 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + V D E+ + E EA +A D++K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 560 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 618 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y L++ + S+ Sbjct: 619 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 675 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ +I + I+ DR R+ QI + ++NA+ ++SKGS + A +D G + Sbjct: 676 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 735 Query: 720 IFSVKNNGSSIPED 733 F VK+ G I +D Sbjct: 736 -FYVKDTGIGIADD 748 >gi|229139865|ref|ZP_04268430.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26] gi|228643530|gb|EEK99796.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26] Length = 448 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 827 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 + A+ IK+ F+ VS+ELR+PL I+GF +LL + ++ L Q +++ I + L N Sbjct: 593 KDAERIKSEFIAAVSHELRTPLAAIMGFAELLTSGEI-PLEEGQ-EFLRIIYDNGRRLKN 650 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFV 681 +V+++LD + ++AG ++ + L + L V S + + + I L Sbjct: 651 MVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIP--PLPPVE 708 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD R+ Q+ +LSNA F+ KG V L+A + V++ G IPE +F R Sbjct: 709 ADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLEGDSLKIEVEDTGPGIPESERSRLFQR 768 Query: 742 F---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + S RG G GLGL I ++ + HGG + + S TT + +P Sbjct: 769 YGRTQSAVSRGV-SGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLP 818 >gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 602 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 13/254 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 V +V R +TE++ + D+++ FV +VS+ELR+PL+ + G+++ L G+ + Sbjct: 346 QVVGAVAVLRDVTEEH----RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPD 401 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ + + I S + LV D+LDLA ++AG M + + + +N L +++ + Sbjct: 402 ERK-ELAQVIHDESLRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAK 460 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD 718 E IR I + +G D RL Q+ + +L NA + +V L+A Sbjct: 461 EREIRLICELPEGNHLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEA 520 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSIS 775 + V++ G IP + VF RF RG G GLGL+IV++ I+ H G V + Sbjct: 521 VLIEVEDEGQGIPAEDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQ 580 Query: 776 SSDEGVTTINCRIP 789 S TT + +P Sbjct: 581 SILGKGTTFSIFLP 594 >gi|156740252|ref|YP_001430381.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156231580|gb|ABU56363.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 475 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 10/240 (4%) Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYIS 614 ALR A E + F+ S+ELR+PLT I ++ L+ + S + Q + + I Sbjct: 232 GRALRPAQEAWERQQRFIASASHELRAPLTLIRASAEVALRDTP--SDTADQYELLGDIL 289 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A S + LV+D+L L +D+G +KL + L DLL+ V + +A + I I++ + Sbjct: 290 AESDHMRRLVDDLLTLTRLDSGQLKLVIEPVNLADLLSRVHRQVARLGEQRGITIELTTV 349 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G G AD +RL Q+ L NA+ + G T+ L AA +V + GS I + Sbjct: 350 G--GVVQADAERLQQVLLIALDNALRHTPSGGTITLAAAPTGRMVQITVTDTGSGIAPEH 407 Query: 735 CKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF ++ RG+ G GLGLSI + + G ++++S+ TT++ +P E Sbjct: 408 LPHIFERFYRADPARGRENGNAGLGLSIAKGLVEAMHGRITVTSALGAGTTVSVALPQGE 467 >gi|86607381|ref|YP_476144.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86555923|gb|ABD00881.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 835 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R +A ++ L + + +K+ F+ VS+ELR+P+TN+ LLK ++ K+ Sbjct: 583 QARLYQASVQQISELERLNRLKDDFLSTVSHELRTPITNMKMAIQLLKMART---PQKRE 639 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 QY++ + L+ND+LDL ++ G L+ + L L V Q + N Sbjct: 640 QYLQILEQECEREAELINDLLDLQRLEQGSKPLHLEEVSLAAWLPTVLQPFVQRAEANQQ 699 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 +++ D K+G V D+ L ++ ++++NA ++ + + A R + + + V N Sbjct: 700 QLQWQIDPKVGKVVTDQAALTRVVQELVNNACKYTPPQHRITVTARRLSPEQVQIRVVNE 759 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP + +F +F + + +R G GLGL++V+ ++ GG VSI S +G T Sbjct: 760 GVEIPRSEWERIFEKFYRIPSGDPWKRGGTGLGLALVKQWMQRLGGCVSIESG-QGKTCF 818 Query: 785 NCRIPS 790 +P Sbjct: 819 TLVLPQ 824 >gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 720 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ AE L + E + A+ +K+ F+ +S+ELRSPL I+G++ LL KL Sbjct: 327 LIDITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKLS- 385 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +K + + I ++ + L+ D+LD++ + G + LN S + L + +++ Sbjct: 386 -EAKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLA 444 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +I ++ + +G D RL Q+ +LSNA+ F+ G V + + Sbjct: 445 AQAKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQLGNVVQI 504 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-- 777 +V + G I D +F+ F R+ G+GLGL+I + LH G + S Sbjct: 505 TVSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGV 564 Query: 778 DEGVTTINCRIP 789 D+G T I R+P Sbjct: 565 DQGATFI-IRLP 575 >gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 1370 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ + EK + L A + K+ F+ ++S+ELR+PL +I+ + L +K G+L +KQ + Sbjct: 650 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 709 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665 + I++S + LL+L+N+ILDL+ V+AG + L+ + L DLL + Q IA + Sbjct: 710 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 765 Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712 + +VI L + D QRL QI +L+NA F+ +G+ +L Sbjct: 766 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 825 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 R+ FSVK++G I ++ ++F F R+ G GLGLSI + +L GG Sbjct: 826 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 884 Query: 771 HVSISSSDEGVTTI 784 + + S+EG +I Sbjct: 885 RIHL-KSEEGKGSI 897 >gi|323691897|ref|ZP_08106150.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323504049|gb|EGB19858.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 916 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 10/216 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+P+ IIG + + +G+ + + ++ + I SS LL+L+NDIL Sbjct: 401 KTDFLSRMSHEIRTPMNAIIGMS-AIAAQAVGN-DEQVAECISKIGISSRFLLSLINDIL 458 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D++ +++G M L I D LN + ++ + + I+D L + D +L Sbjct: 459 DMSRIESGKMLLKNEKIPTEDFLNGLNAICYSQAASKGVDYECIADPTLDDVYTGDAMKL 518 Query: 688 LQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 Q+ ILSNA+ F+ +G S ++ + R+ F+V +NG I ED + +F F Sbjct: 519 QQVLLNILSNAIKFTGEGGKVTFSAMVRRKVRNMAGLRFTVNDNGIGIGEDFLRHMFEPF 578 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S G GLGL+I +S +++ GG +++ S Sbjct: 579 AQESMGTTALYGGTGLGLAISKSIVDMMGGTITVRS 614 >gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] Length = 1215 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E+ L + K+ F+ ++S+ELR+PL +++ LL + +L+ K+ +Y I Sbjct: 764 IEERARQLALSSRYKSEFLANMSHELRTPLNSLLILARLLAQNPANNLSPKEVEYANVIH 823 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 ++ + LL L+NDILDL+ V+AG + ++ L+ LL++V+ + E +R V ++ Sbjct: 824 SAGSDLLQLINDILDLSKVEAGKIDIHLERFALSALLDDVQGIFCPIIEEKGLRFTVEVA 883 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNGDFIFSVK 724 + V+D+QRLLQ+ +LSNA+ F+ G S +L R F+V Sbjct: 884 PDVPDALVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVVSDRVLDDERRPA-VAFAVI 942 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I E+ +F F RR G GLGLSI L GG + S Sbjct: 943 DTGIGIAEENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREVAALLGGVIRAQS 996 >gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1371 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 123/218 (56%), Gaps = 12/218 (5%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ ++S+E+R+P+T ++G +LL L + +Q +YVE I +S+T LL ++NDI Sbjct: 797 LKSQFLANMSHEIRTPITGVLGMAELLAGMHL---DEEQQEYVENIQSSATSLLTVINDI 853 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--ADR 684 LD + V++G + + L+ ++ EV + + + N+ + I D V D Sbjct: 854 LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSEIGDSIENDLVVIGDP 913 Query: 685 QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 R+ QI + +L+N++ F+++G S V K ++ + F+V+++G I +++ K +F Sbjct: 914 GRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETAESIEVRFTVEDSGIGIQDEVRKKLFQ 973 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I ++ ++L G +S+ S Sbjct: 974 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1011 >gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] Length = 1937 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L KQ ++ Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+A+ T LL+L+NDILDL+ +++G + L + L D+ + ++ E ++ Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + + G S D +RL Q+ +LSNA F+ KGS V LK G Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I ED + +F F R+ G GLGL+I L GG + + S Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465 >gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 490 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 557 EKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYI 613 EKN E L++A +KN F+ ++++ELR+P+ + G D+L LG+ L Q + V I Sbjct: 128 EKNVKEELKEATGVKNEFLANITHELRTPVNGMKGLADVL----LGTELTQNQRENVNII 183 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 + N++N ILD + + AG M+L I +++ L K++E ++++V I Sbjct: 184 RRCCDNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNI 243 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728 D + D RL QI S ++SNA+ F+S G VI D + F V ++G Sbjct: 244 GDNVPKKILGDELRLEQILSNLISNAIKFTSVGQLVIEVINTDQKEDEVELFFMVIDSGI 303 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ +F F RR G GLGL+I +S + L GG + +SS Sbjct: 304 GISKEDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSS 353 >gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland] gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613] Length = 464 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 650 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 19/268 (7%) Query: 529 SIIPLPNAQ-----TMLTFVNVTDSVR--AER-ALTEKNEALRKADE----IKNSFVQHV 576 S+ PL NA+ ++T V++T R AER L ++ ++ R E IK+ F+ + Sbjct: 228 SLAPLHNAEGNVCGVVMTAVDITTRKRIEAERFNLLQREQSARAEAEAANRIKDEFLAVL 287 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+PL +I+G+ L++ KL +Q+ +E I +++I L+ D+LD++ + G Sbjct: 288 SHELRTPLNSILGWITLIQRGKLNQTTLEQA--LEVIERNASIQTQLIEDLLDISRISRG 345 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 + LN +++ L +L+ ++ +I I++I D ++ D RL Q+F + S Sbjct: 346 QLNLNINSVNLVELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRLQQVFWNLFS 405 Query: 697 NAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRR 752 NA+ F+ K +V +K + + V ++G I + VF F ++ R Q Sbjct: 406 NAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQADASTTRSQ-G 464 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEG 780 G+GLGL+I + LHGG + + S +G Sbjct: 465 GLGLGLAISRHLVELHGGTIDVESEGKG 492 >gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217] gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217] Length = 1659 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 20/243 (8%) Query: 553 RALTEKNE---ALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R +TE+ E LR+A E K++F+ ++S+E+R+P+ I+G L++ + + Sbjct: 874 RDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHT---DM 930 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q YV ++ LL L+NDILD + +DAG + ++ L +++ E+ +A M Sbjct: 931 TPQQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAANM 990 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 +I + D + V AD+QRL Q+ + NA+ F+++G ++ LK + Sbjct: 991 RRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSHKV 1050 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 SV + G I +F F+ RR G GLGL+I + + L G + + Sbjct: 1051 RLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVE 1110 Query: 776 SSD 778 S + Sbjct: 1111 SQE 1113 >gi|82702619|ref|YP_412185.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410684|gb|ABB74793.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 835 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 135/255 (52%), Gaps = 17/255 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T++V AE AL E AD K+ F+ +++ELR+PL I L+ G+ Sbjct: 457 IDITEAVAAETALLE-------ADRRKDEFLATLAHELRNPLAPIASALTLIAGPD-GA- 507 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ + + I+ ++ LV+D+L+++ + +G ++L L +L ++ ++ Sbjct: 508 -AEIPRLLPVINRQVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQI 566 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E + + + I+D L + D RL QIF+ +L+NA+ ++ +G + L A +++ + Sbjct: 567 REKELELSISITDTPLIVY-GDTVRLEQIFANLLNNAVRYTGRGGKIWLTARQEDHKAVV 625 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSS-- 777 SVK+NG I M +F+ F G + G+G+GL++V+ + +HGG V SS Sbjct: 626 SVKDNGIGILPGMLPRLFDMFAQERRSGMGTQEGLGIGLNLVDRLVQMHGGSVEASSEGK 685 Query: 778 DEGVTTINCRIPSKE 792 D+G + R+P E Sbjct: 686 DKG-SEFTVRLPLSE 699 >gi|298481962|ref|ZP_07000151.1| RteA, two-component system histidine kinase, with response regulator receiver domain protein [Bacteroides sp. D22] gi|295087318|emb|CBK68841.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain. [Bacteroides xylanisolvens XB1A] gi|298271826|gb|EFI13398.1| RteA, two-component system histidine kinase, with response regulator receiver domain protein [Bacteroides sp. D22] Length = 819 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 16/207 (7%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVD 634 ++++LR+PLT I G+ +LL G ++ K+ +Y +I SS ++ LVN +++ +D Sbjct: 347 IAHDLRAPLTAIKGYAELLP----GEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLD 402 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVADRQRLLQ 689 AG K+N + L +E+ K+H ++R + ++ +G DR R++Q Sbjct: 403 AGKGKMNVTVFRPLSLFDEI-----VKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQ 457 Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 I + +LSNA+ F+ KG + L+AA G+ FSV++ G + ED K +F F + Sbjct: 458 IANNLLSNAIKFTRKGK-ISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNAR 516 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV L GG +++ S Sbjct: 517 YLPGFGLGLAIVSRLTELLGGRITVES 543 >gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As] Length = 914 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS----KLGSLNSKQSQYVEYISASSTI 619 +A+ ++NS + +S++LR+PLT ++G ++L T G + SQ + + S Sbjct: 665 QAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQALSLLQQSRR- 723 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG 678 L +V+D+LD+A + +G + L + +L+ +++ A + ++ ++I + +D L Sbjct: 724 LARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDLPADFPL- 782 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD L ++ +L NA+ F+ G+ + ++A + +V + G +P ++V Sbjct: 783 -VRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAGRERAV 841 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F F GVGLGL+I + + HGG V+ +++ EG N R+P E Sbjct: 842 FETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLPLHE 895 >gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 850 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 127/239 (53%), Gaps = 14/239 (5%) Query: 551 AERA-LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 AER L E+ +A R +A+ IK+ F+ +S+ELRSPL I+G++ LL+T + + +K Sbjct: 462 AERQQLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITTK 521 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + + I ++ + L++D+LD+A + G +KL +T+ L ++ + + T Sbjct: 522 KG--LSTIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAEAK 579 Query: 666 NI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +I + +VI+ + D RL Q+ +LSNA+ F+ +G V ++ + +V Sbjct: 580 SIALQFEVIT---VCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVRLEVNGEQACLTV 636 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 K+ G I D +F F R+ G+GLGL+IV+ ++ H G ++ SS EG Sbjct: 637 KDTGKGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEG 695 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 11/236 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + R L + EAL +A K+ F+ +S+E+R+P+ IIG T L + + + Sbjct: 602 AARNAELLKSQQEAL-EATRAKSEFLATMSHEIRTPMNGIIGLTYLALQREC---PAAIA 657 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+ I ++ LL ++NDILD + V++G M L+++L+ Q + E + Sbjct: 658 DYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTLSEVLDNTLQMFTHAVREKGL 717 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FS 722 ++ + +G S V D RL QI ++ NAM F+ +GS T+ ++ + + F+ Sbjct: 718 SLRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGSVTLFVRCVETDQQTVTLGFA 777 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V++ G IP D S+F F+ RR G GLGL+I + GG + + S Sbjct: 778 VRDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHVRS 833 >gi|294672860|ref|YP_003573476.1| sensory box histidine kinase [Prevotella ruminicola 23] gi|294473702|gb|ADE83091.1| sensory box histidine kinase [Prevotella ruminicola 23] Length = 660 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 133/255 (52%), Gaps = 13/255 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 NVTD + + L E+ E +A K++F+ +S+E+R+PL I+GF+D+L T S Sbjct: 409 NVTDLIYKQEQLKEETERANQAGMRKSTFLASMSHEIRTPLNAIVGFSDVLATM---STP 465 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ ++ IS + +LL LVNDIL L+++++G + + + N V S+A ++ Sbjct: 466 EEREGIIQVISNNCDMLLRLVNDILALSSLESGDIIVKPTRTDFAKCFNSVATSLAQRI- 524 Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718 N +I+ + + +++ D R QI + ++NA+ ++ +G I + +D Sbjct: 525 -KNPKIEFLVESPYPTYITTIDGGRTQQIVTNFVTNAIKYTQQGHIKIGYEQQMRQDKEG 583 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 ++ G+ IP++ VF+RFV Q G GLGLSI + + GG + ++S Sbjct: 584 LYIYCEDTGAGIPKEHQGKVFDRFVKLNDFVQ--GTGLGLSICKLIADNSGGEIGVTSEG 641 Query: 779 EGV-TTINCRIPSKE 792 + +T IP K+ Sbjct: 642 KDCGSTFWVWIPCKQ 656 >gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1467 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 934 QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 992 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + I+LH G + S + Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151 >gi|126738532|ref|ZP_01754237.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6] gi|126720331|gb|EBA17037.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6] Length = 515 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 84/381 (22%), Positives = 167/381 (43%), Gaps = 18/381 (4%) Query: 171 LDGIYS-ELAETTL--KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227 +DGI +L +TL + K L ++ + + VW + + G + W+N++Y + Sbjct: 123 IDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSEEGLVTWSNLAYD---D 179 Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287 + + S +F + +SS E+ ++ E Y I G Sbjct: 180 LSNKLRGRNADFSVPMFSN--LQEPMSSGKPERI---SIPLPESDKRLWYNISTTETEAG 234 Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343 A+DV+ EI + + + L++ +AIFD+NR L N ++L + Sbjct: 235 WLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPA 294 Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH 401 +FL++ P+ + LR +PE N+ +W+ I + +++ +++TW LP+G Sbjct: 295 SFLSSRPTLLTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVYS 354 Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461 V +P G ++FE++T +V L ++ + ++V +D + E +AVF +G + SN Sbjct: 355 VSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEVGQSILDQMDEAIAVFTNEGTMSFSNT 414 Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521 + LWK + + I + A N + W + ++ R ++L Sbjct: 415 TYHELWKMDPDTSFAKVSIMDAARVWQDTCNATSVWGEIRDFVAG-NEVRTPWWAHVQLR 473 Query: 522 SDSVLEYSIIPLPNAQTMLTF 542 + L + L N T+++F Sbjct: 474 DGTALVCKVSALQNGATLVSF 494 >gi|119476572|ref|XP_001259199.1| two-component sensor protein histidine protein kinase (dhkk, dhkj) [Neosartorya fischeri NRRL 181] gi|119407353|gb|EAW17302.1| two-component sensor protein histidine protein kinase (dhkk, dhkj) [Neosartorya fischeri NRRL 181] Length = 2285 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 14/227 (6%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 +SF+ ++S+ELR+PL +IG ++LL S + Q + E I S+ +LL ++NDILD Sbjct: 1886 SSFLANISHELRTPLNGVIGNSELLLNSPV---PEAQLEMAESIRMSANLLLAVINDILD 1942 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLGS---FVADR 684 + V+A M+L+ + ++ EV +SI T K + + ++ D +L D Sbjct: 1943 FSKVEANKMQLHVVPFDVERMVMEVVRSIPTDSKNGPRSSNVHIVHDIQLQETRHVCGDP 2002 Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740 RL QI +L N++ F+ KG+ T+ +A + D + F V + G IP + +F Sbjct: 2003 VRLRQILGNLLGNSLKFTEKGTITIGARAENETEDSVRLSFWVADTGIGIPSALIPRLFR 2062 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 F RR G GLGLSI + + L GG + + S++ TT++ Sbjct: 2063 PFTQADASTARRFGGTGLGLSICKLLVELMGGTIDLKSTEHVGTTVS 2109 >gi|319787299|ref|YP_004146774.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317465811|gb|ADV27543.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 736 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LT E ++A E K+ F+ ++S+E R+PL + G T+LL T+ L+S+Q + + Sbjct: 175 RQLTRATEEAQRASEAKSRFLANMSHEFRTPLNGLAGMTELLSTTP---LDSEQRECLRT 231 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I AS+ L+ LV D+LD++ ++AG +KL+ + ++ + + + + + V+ Sbjct: 232 IQASTRSLMGLVEDVLDISAIEAGKVKLSPENFSPREAVDSIGLILQPQARQKQLEYLVV 291 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI---FSVKN 725 + + S V D L Q+ ++ NA+ F+ G V L A D G + F+V + Sbjct: 292 VEDAVPSLVHGDAVHLRQVLLNLVGNAVKFTDAGRVRVDVSLAGASD-GQVVRLRFAVSD 350 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 G IPE M + +F F A G R G GLG +I + GG + Sbjct: 351 TGIGIPESMRERLFEAF-EQADAGLARRYGGTGLGTTIARGLVEAMGGRIG 400 >gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1937 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ AL EK E L K+ F+ ++S+ELR+PL +++ + LL ++ G+L KQ ++ Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+A+ T LL+L+NDILDL+ +++G + L + L D+ + ++ E ++ Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349 Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721 + D L S D +RL Q+ +LSNA F+ KGS V LK G Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 SV + G I ED + +F F R+ G GLGL+I L GG + + S Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465 >gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 748 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 15/236 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RAERA E ++A K F+ +S+E+R+P+ I+G T + S +G + K Sbjct: 342 RAERAFAEA----QQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALES-IGD-DGKVRTC 395 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 +E ++ SS LL+L+NDILD++ +++G +++ L+ + + T+ E N+ Sbjct: 396 LEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVFRTQASERNVAF 455 Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD----FIFS 722 + +G++ G V D RL Q+ ++ NA F+ +G +V L+ R D D F+ Sbjct: 456 DTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLADAEDGCVWLRFA 515 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V + G I + +F F R+ G GLGL+I + F+ L GG + ++S Sbjct: 516 VDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMGGRIRVAS 571 >gi|229090891|ref|ZP_04222119.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42] gi|228692500|gb|EEL46231.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42] Length = 288 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 132/239 (55%), Gaps = 13/239 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QYV Sbjct: 48 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 106 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ + Sbjct: 107 LKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCIK 166 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D +L D ++++F ++SN++ + G ++++ ++ + + +KN G IP+ Sbjct: 167 GDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKNFGQCIPD 225 Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 + VF +F +RG++ G G+GL+I S LH G +++ S++ E V TI Sbjct: 226 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVFTI 280 >gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1303 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 23/255 (9%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T AE+AL + EA A+ K+ F+ +S+E+R+P+ +IG T L++ + + Sbjct: 499 MLDITREREAEQALQQAKEAAEAAERAKSDFLAIMSHEIRTPMNTVIGMTRLVQQT---A 555 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S+Q Y+E + S++ LL ++NDILD + ++AG++ L L+D+L V S A + Sbjct: 556 LTSRQRGYLEKVERSASALLAVINDILDFSKIEAGMLVLEEVDFALDDVLETVTASTALR 615 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------- 709 E + + D +L + D RL Q+ + ++ NA+ F+ G VI Sbjct: 616 AEEKGLEVVYALDPQLPPRLRGDPMRLGQVLTNLVGNAVKFTEHGEVVISLHLAPPPVDA 675 Query: 710 ------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761 A SV++ G + + +F F + RR G GLGL+I Sbjct: 676 PADADADTTAAPLHHLCVSVRDTGIGLDASRAERLFQPFTQADIQTTRRHGGTGLGLAIC 735 Query: 762 ESFINLHGGHVSISS 776 + L GG + + S Sbjct: 736 HRLVQLMGGEIGVRS 750 >gi|85711698|ref|ZP_01042755.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145] gi|85694558|gb|EAQ32499.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145] Length = 655 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 130/252 (51%), Gaps = 23/252 (9%) Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +TE+ +A R+A KN F+ ++S+E+R+PL I+G +L+ + +L++ Q Q + Sbjct: 265 VTEQKQAEINARRAASAKNVFLANMSHEVRTPLHGILGLVSVLENT---ALDTHQHQLLM 321 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S LL ++ND+LDL + G +KLN + L +L ++ + E ++ + Sbjct: 322 TVKESGDHLLQMLNDLLDLTRSEEGQLKLNKDVLELARILQHIESMYRAPIEEKGVKFII 381 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFI 720 L + +DR RL+QI + +L+NA+ F+ +G+ ++ + G+ + Sbjct: 382 HHSQVLPERIFSDRARLIQILTNLLNNAVKFTEQGTIMLSIDWSVDPATTTQTQAQGELL 441 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSS 777 V++ G+ I + + ++ F H+G ++ G GLGL+IV + + L G + + S Sbjct: 442 IKVRDTGAGIRD--TQRIWQLF-EQEHQGLSKKQSGSGLGLAIVRNLVQLLDGEIEVDSE 498 Query: 778 DEGVTTINCRIP 789 T + R+P Sbjct: 499 PNRGTCFSLRLP 510 >gi|319900473|ref|YP_004160201.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415504|gb|ADV42615.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 701 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 18/235 (7%) Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L +KNE L + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+ ++ +Q Sbjct: 460 LRKKNEELAVARDEAQSANRMKSMFIQNMSHEIRTPLNSIVGFSQLIANPEMELEPEEQQ 519 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--N 665 +Y E I ++S +L LVND+L LA +++G + NDL +QS+AT H Sbjct: 520 EYSELIVSNSELLTTLVNDLLSLAELESGKYVTKMAPQRCNDL---CRQSLATVTHRKPQ 576 Query: 666 NIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSV 723 ++R+ SD D QR+ Q+ +L+NA + G + + G FSV Sbjct: 577 DVRLYYTSDVPDDYEITTDGQRVRQVLINLLTNAEKHTEHGEIHLHCSLSETPGSATFSV 636 Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G+ IP + + +F RF NA +G GLGLSI + G V + +S Sbjct: 637 TDTGTGIPAEQAEHIFERFEKLNAF---DQGFGLGLSICRLIADYLGAVVKLDTS 688 >gi|317056280|ref|YP_004104747.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] gi|315448549|gb|ADU22113.1| integral membrane sensor signal transduction histidine kinase [Ruminococcus albus 7] Length = 808 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 11/257 (4%) Query: 519 ELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577 EL ++ E I PL ++ N++D+V ++ E K++ +K V +VS Sbjct: 535 ELNRNTPFEVEISPLSELSRPSDMLKNISDTV------SDAVEEQIKSERMKIELVANVS 588 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 ++L++PLT+II + DLLK ++L + + YV+ + S L ++V D+ LA +GI Sbjct: 589 HDLKTPLTSIISYIDLLKKTEL---DDEAMGYVQILDKKSQKLKSIVADVFSLAKATSGI 645 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 +N + L N+ K++E+ +K+ + D +L ++ I+ N Sbjct: 646 -DVNMEELDFVRLFNQCLADADDKINESGKVVKLSVTADTAPVMGDGNKLYRVLQNIIDN 704 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757 A+ +S GS + ++ R D + SVKN S E + RFV G GLG Sbjct: 705 ALKYSMDGSRIFMELKRTEDDVVLSVKNTSSYPIEFTADEITERFVRGDKSRTDGGSGLG 764 Query: 758 LSIVESFINLHGGHVSI 774 LSI +SF GGH I Sbjct: 765 LSIAKSFTEACGGHFDI 781 >gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1467 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 934 QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 992 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF NA +G G+GL++ + I+LH G + + S EG Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1152 >gi|222096717|ref|YP_002530774.1| sensor histidine kinase [Bacillus cereus Q1] gi|221240775|gb|ACM13485.1| sensor histidine kinase [Bacillus cereus Q1] Length = 458 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|229179502|ref|ZP_04306855.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W] gi|228604003|gb|EEK61471.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W] Length = 448 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447 >gi|225405399|ref|ZP_03760588.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme DSM 15981] gi|225043101|gb|EEG53347.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme DSM 15981] Length = 533 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E+ A + +++ ++ +S++LR+PLT+I G +L ++ Q + I Sbjct: 291 IREEEAANARTQQLRADLLRSISHDLRTPLTSISGNAGILMNDTGHLAEERKKQVCQDIY 350 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L+NLV ++L + ++ G M+LN +L +++ E + I+ K E+ + + D Sbjct: 351 DDSMWLINLVENLLSITRMEGGTMQLNMEGELLEEVIGEAMRHISRKASEHTLSVTQEGD 410 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D + ++Q+ ++ NA+ ++ GS + ++A R + + ++G IP+ Sbjct: 411 FLLARM--DSRLIIQVIINLVDNAIKYTPPGSHIQVRAFRRGDLAVVEIADDGPGIPDSA 468 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + VF+ F SN +RG+GLGL++ S + HGG +++S Sbjct: 469 KERVFDMFYTASNKPVDSKRGMGLGLALCRSIVTAHGGQITVS 511 >gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1168 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 12/239 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ ++ +E+R+P+T ++G ++LL S L + +Q Y + I + Sbjct: 792 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPL---DPQQRGYTQSIRHAG 848 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+LVND LDLA +++G ++L L+ LL ++ + + +R + + Sbjct: 849 EHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPP 908 Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733 G D R+ QI +LSNA+ F+S+G+ + AR +G+ F V++ G I ++ Sbjct: 909 GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 966 Query: 734 MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF ++ R Q G GLGL+I G + + S T +P Sbjct: 967 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1025 >gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 852 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 14/235 (5%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL------NSKQSQYVEYIS 614 A A++ K+ F+ ++S+ELR+PL I+GFT L+++ + +S + Y+ IS Sbjct: 355 AANTANKAKSEFLANMSHELRTPLNAILGFTQLMQSDHANTTYFQKERSSDYNNYLGIIS 414 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ND+L ++ ++AG + L+ + L LL +++ ++ + I + V D Sbjct: 415 RSGGHLLTLINDVLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSMRAEAKAITLSVQVD 474 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729 + FV D +L Q+ ++ NA+ F+ GS V L + +N + FS+ + G Sbjct: 475 QAVPQFVKTDEAKLRQVLVNLVGNAIKFTPTGS-VTLSVSCENIPSLYRLNFSIVDTGVG 533 Query: 730 IPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 I + +F+ F + R +G GLGL+I + F+ + GG +++ S D+G T Sbjct: 534 ISAEDLSCLFDPFFQASRTRTAHQGTGLGLAISQRFVQMMGGEINVESIVDQGST 588 >gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142] gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC 51142] Length = 1317 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 17/243 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615 R+ + +K +F+ VS+ELR+PLT+I+GF+ L++ ++ + K + VE I Sbjct: 1071 REMERMKRNFLSMVSHELRTPLTSIVGFSSLIRDKLHAVVFPQIQEKDKKVDKAVERIKQ 1130 Query: 616 SSTI-------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I L LVND LD+ +++G + L+ + + +L S A ++++ Sbjct: 1131 NLDIVVFEAERLTKLVNDFLDMTKIESGKITLSLFPVKPSTVLTWAIASTAPLFEDSSVE 1190 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + +L + + D RL+Q+F ++SN F+ GS V D+ + + S+ + G Sbjct: 1191 LIEDFPEELPTILGDEDRLIQVFVNLISNGFKFTETGS-VTCHGEVDHDNLLISITDTGI 1249 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I E+ VF F V N + +G GLGLSI + I HGG + +S + +T Sbjct: 1250 GIAENDYSKVFEPFQQVGNILTNKPKGTGLGLSISKQIIEQHGGKIWFTSERQKGSTFFV 1309 Query: 787 RIP 789 +P Sbjct: 1310 SLP 1312 >gi|149280480|ref|ZP_01886599.1| two-component sensor histidine kinase [Pedobacter sp. BAL39] gi|149228792|gb|EDM34192.1| two-component sensor histidine kinase [Pedobacter sp. BAL39] Length = 584 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 120/217 (55%), Gaps = 3/217 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ DE K +F+ VS+EL++P+++I LL ++GS+N++Q + V++I LL Sbjct: 354 KELDEAKTNFIATVSHELKTPISSIKMSLKLLDDERVGSMNTEQKELVQHIKEDCGRLLK 413 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 + +++LDL+ V+ G ++LN+ + ++ + + +I +++IS L Sbjct: 414 ITSELLDLSQVETGNLQLNFVKSDPRKIAIYAMDAVRFQAEQKSIELELISRNDLPKVNV 473 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++ + LSNA+ +SS S V+++ ++GD I FSV++ G I K +F+R Sbjct: 474 DTEKTAWVLVNFLSNALRYSSAKSKVVIQIV-ESGDHIEFSVRDFGKGIDMQYQKRLFDR 532 Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777 + G + G GLGL+I + FI GG + + S+ Sbjct: 533 YFQVPTDGNNKSGSGLGLAISKDFIEAEGGKIWVESA 569 >gi|94313181|ref|YP_586390.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans CH34] gi|93357033|gb|ABF11121.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans CH34] Length = 1418 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 12/256 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V++T+ AL + +A A K+SF+ +S+E+R+P+ I+G +LL+ + Sbjct: 771 YVDLTEERERANALAQAKDAAEAASRAKDSFLAMMSHEIRTPMNGILGLIELLQRTP--- 827 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L ++Q + V S L +++DILD A ++AG + + + + L +L + V S+ + Sbjct: 828 LTAEQQRMVALAGESGQALGRILDDILDYAKLEAGRLAILRAPVDLRELFDGVLGSLLPQ 887 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 + +R+K ++ + V AD RL QI +L NA+ F+ GS V+L+A + G Sbjct: 888 AFQKGLRLKQRVSAEVAAIVQADGIRLRQILFNLLGNAIKFTDHGS-VMLRATMEPGATG 946 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + V++ G I +F F+ + RR G GLGL+IV + L G ++ Sbjct: 947 LPMLVVVVEDTGIGIARTDLARLFAPFMQSERSTARRFGGTGLGLTIVRTLAELMDGEIT 1006 Query: 774 ISSSDEGVTTINCRIP 789 + S TT R+P Sbjct: 1007 LKSEAGVGTTAVLRVP 1022 >gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] Length = 591 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/355 (22%), Positives = 176/355 (49%), Gaps = 35/355 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV +G + + NP F +W+ E+ + I S +L Sbjct: 264 MADGVVTLNQEGEVVVINPPAEHFLQVWQEEK-------EVELIKKLPSELV------EL 310 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ S ++++ ++ L+ + VL + PL N QT + +V R +TE+ Sbjct: 311 FHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE- 358 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 R+ ++++ F+ +VS+ELR+P+ + G+++ + + + +++V+ I S Sbjct: 359 ---RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESVR 414 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVN++LDLA +++G ++L+ + ++ + ++ + + +++ V + Sbjct: 415 LGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIEQ 474 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D R+ Q+ + ++ NA+ ++ G V L N F V+++G+ IPE+ +F Sbjct: 475 YPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFLF 534 Query: 740 NRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +RF RG++ G GLGL+I ++ + H G + +SS TT + +P++ Sbjct: 535 DRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSVYLPNR 589 >gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] Length = 892 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 11/227 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL A + K+ F+ ++S+E+R+PL I+GFT LL ++L N +Q +Y++ I +SS Sbjct: 265 RREAL-DASQTKSDFLANMSHEIRTPLNGILGFTRLLSGTRL---NKRQLEYLQTIESSS 320 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676 T LL+++NDILD + ++AG + L+ + + ++D++++V +A + H+ +I + ++ Sbjct: 321 TSLLSIINDILDFSKIEAGKLVLDQAPVNVSDIIDDVITMLAPEAHKKHIELAALVYQDV 380 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPE 732 + D RL QI + +++NA+ F+ GS + ++ ++ D FSV++ G + + Sbjct: 381 PQEIMGDSLRLKQILTNLINNAIKFTHTGSVIVRVMLEEQEGSDVTLKFSVQDTGIGMTD 440 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 D K++F F RR G GLGL I + G + S+ Sbjct: 441 DQQKNLFKAFSQGDESTSRRYGGTGLGLVISRYLVEHMQGELGFDST 487 >gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 822 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 12/249 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+A E+ AL A K+ F+ ++S+E+R+PL I+GF LL+T+ LN +Q +++ Sbjct: 303 EKADKERRSALDTA-RAKDLFLANMSHEIRTPLNGIVGFIQLLETT---PLNEEQREFIR 358 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS LLN+VNDILD + ++AG ++L D ++ A K I V Sbjct: 359 VVQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAV 418 Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSVKN 725 D L G + D R+ Q+ +++NA+ F+ +G V + K G+ F V + Sbjct: 419 YVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSD 478 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I D + +F+ F R+ G GLGLSI + GG +++ S ++ Sbjct: 479 TGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSS 538 Query: 784 INCRIPSKE 792 +P K+ Sbjct: 539 FFFTLPLKK 547 >gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453] gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453] Length = 559 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 11/238 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA A + K F+ +S+E+R+P+ +IG DLL S+L +Q +Y I Sbjct: 155 LVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QEEQREYATIIR 211 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ L+N++NDILD + +++G M+L L + EV + + + N+++ + Sbjct: 212 NSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLQLSYYIE 271 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729 ++ S V D RL Q+ ++SNA+ F+++G ++ + D F+VK+ G Sbjct: 272 ERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQVEEDRLTLEFTVKDTGIG 331 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 I + +F F R+ G GLGL+I S + + GG +++ S + +G T + Sbjct: 332 ISSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGATFV 389 >gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli OP50] Length = 724 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|229162131|ref|ZP_04290102.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803] gi|228621338|gb|EEK78193.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803] Length = 448 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSE--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ + S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447 >gi|319653852|ref|ZP_08007946.1| hypothetical protein HMPREF1013_04565 [Bacillus sp. 2_A_57_CT2] gi|317394388|gb|EFV75132.1| hypothetical protein HMPREF1013_04565 [Bacillus sp. 2_A_57_CT2] Length = 372 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 ++E A+ E +++ +++KN V V+++LRSPLT+IIG+ DL+ + + + Y Sbjct: 131 KSEEAIKE----VKRTEQLKNELVTSVAHDLRSPLTSIIGYLDLINNDRYSN-EVELRHY 185 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I A ++ L L+NDI + + +KL+ I + ++LN++ ++ + Sbjct: 186 VQIIHAKTSSLYALINDIFEYTYMQNQQIKLHKEAINIEEMLNQIAVQTKVQLEAAGMEF 245 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 ++ S D +L ++F ++ NA+ + S G + A D D I + N G Sbjct: 246 RLFSSVDDPVVEGDGVKLARVFENLIQNAIRYGSDGRY-LDAALHDRKDMIEIEIANYGQ 304 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 +IP +F+RF V + G GLGL+I +S ++LH G++ + S+ G T Sbjct: 305 AIPRIDLPHIFDRFYRVEKSRSQYTGGSGLGLAISKSIVDLHSGYIDVESA-PGKTAFTI 363 Query: 787 RIPSK 791 ++ K Sbjct: 364 KLFKK 368 >gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 915 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 6/211 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PLT++IGF+ LL++S+ +L + + +Y + I+ SS LL+++NDIL Sbjct: 543 KSEFLANMSHELRTPLTSVIGFSGLLQSSE--ALPAAERRYADRIATSSEALLSVINDIL 600 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D + ++A + L+ + + T+ + + + + L G+ + D RL Sbjct: 601 DYSKLEADAVGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRL 660 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ LSNA+ F++ G + L +G +V ++G + D ++F RF Sbjct: 661 RQVTLNFLSNAVKFTNTGE-IRLDVGSVDGRMRVAVTDSGIGVAADKIDALFERFTQADA 719 Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISS 776 R G GLGL+I I + GG + +S Sbjct: 720 STTRVYGGTGLGLAICRRLIEMMGGEIGATS 750 >gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1419 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ V++T+ E L E + K+ F+ ++S+E+R+P+ I+G DLL + Sbjct: 1013 LMLIVDITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLADTP 1072 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q +YV+ S IL+ ++NDILDL+ ++AG + L L + L + Sbjct: 1073 ---LTPRQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTCAVF 1129 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + E + + D L V D RL QI + +L+NA F+ +G + +A G Sbjct: 1130 TPQAEEKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHEGEIRLSASATLLG 1189 Query: 718 DFIF----SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F + ++ G I P+D+ + N F + QRRG GLGL+I + L G + Sbjct: 1190 PSAFLLRLTCRDTGVGIAPDDIARVCDNFFQVGGN--QRRGTGLGLAISKRLTELMQGEL 1247 Query: 773 SISS 776 SI S Sbjct: 1248 SIQS 1251 >gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] Length = 1444 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 911 QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 968 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 969 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1088 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF NA +G G+GL++ + I+LH G + + S EG Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1129 >gi|218904373|ref|YP_002452207.1| sensor histidine kinase [Bacillus cereus AH820] gi|218538730|gb|ACK91128.1| sensor histidine kinase [Bacillus cereus AH820] Length = 458 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I I+ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|330944138|gb|EGH46261.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 909 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ LG N + Sbjct: 498 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 553 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 554 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 613 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 614 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 672 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 673 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 731 Query: 789 P 789 P Sbjct: 732 P 732 >gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1078 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 16/299 (5%) Query: 503 IITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKN 559 I +F+ ER ++ LL + LE S P + + VT + + + AL Sbjct: 498 IQRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGERITHVAVVTRDITSYKDALRHLE 557 Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +A R+A+E K++F+ +S+E+R+PL I G +DLL S+ ++ + + + I S Sbjct: 558 DARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR---VSPEVEEGLAIIKDS 614 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 + LL L+NDILDL+ ++AG ++L + DL+ + + + ++ +S+G Sbjct: 615 AGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELHLSEG 674 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731 D R+ QI +LSNA+ F+ +G + D + V++ G IP Sbjct: 675 LPSEVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIP 734 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + + +F F RR G GLGLSI + GG V +SS +T CR+ Sbjct: 735 PEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTVVVSSEVGRGSTFVCRL 793 >gi|302344057|ref|YP_003808586.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640670|gb|ADK85992.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 488 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R RAL E +R +++K+ F+ +S+EL++PL ++ GF LL G+ + ++SQ Sbjct: 244 LRKTRALEMALEEIRSVEKLKDEFLTTLSHELKTPLVSLKGFLQLLLR---GAASPEESQ 300 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++E + L +N++LDLA + + + L LL +++ E+N+ Sbjct: 301 AHLEVCWRNLLKLEQQINNLLDLARLSQSKEHFRLAPVDLVKLLGTECENLRPTAEESNV 360 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V G+ V + ++L+Q+ ++ NA+ ++ KG V L R +G +V+++ Sbjct: 361 SLSVDETPLEGAVVLGNAEKLIQLLDNLIVNAIKYNKKGGQVHLSVERGDGRVTLAVRDS 420 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + S+FN+F G R G+G+GL++V+ + LHGG +++ S Sbjct: 421 GVGIAREHMASIFNKFYRADITGTGRLEGLGIGLALVQEIVKLHGGDIAVQS 472 >gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii] gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 771 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 13/252 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNI 587 NA+ +TD + ER + E+ NE L++ D+ ++ FV S+ELR+P+T+I Sbjct: 501 NARAYTELATLTDHL--ERRVQERTHELQTVNERLQEHDQRRSKFVSVASHELRTPMTSI 558 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 GF + + G L+ +Q Y++ + + L ++N +LD + +D G +++ + + Sbjct: 559 KGFVENMLDGLTGQLSERQEHYLQRVKHNVDRLTRIINQLLDWSRLDVGRIEIKPEPLHI 618 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++ + +V +S T E +I + V+ + + ADR +L QI ++ NA+ F+ Sbjct: 619 DEFVRDVVESFQTLAAEKSIVLDVLPCEQPITVRADRDKLEQILWNLVGNAIKFTPPSGH 678 Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 V + + + + +V + G I D VFN F V +A +G LGL I +S Sbjct: 679 VSVSCSICDARYAQITVADTGCGIAPDELPHVFNEFSKVESAMPSS-QGAQLGLFITKSL 737 Query: 765 INLHGGHVSISS 776 + LHGG + + S Sbjct: 738 VALHGGQMCVDS 749 >gi|299143500|ref|ZP_07036580.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517985|gb|EFI41724.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 593 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 38/383 (9%) Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458 V V SN G + MF LT +++ L K + TI ++++EGV G + Sbjct: 227 RVEVKSNDEIGNLGSMFNYLTEELNTTINQMNLEKSKLNTIFNYMAEGVIAVSRSGYLIH 286 Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518 +NP R + +EN L + + Y + S SL+G Sbjct: 287 ANPIAREILDLDENYLKTKQDLTKLNIFGINYSDNS------------------SLEGES 328 Query: 519 EL-LSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 EL + D + P + T L + V + E L D ++ FV +V Sbjct: 329 ELEIKDKFFKIKYAPYKKGRLTNLGLIVVLQDITKEHTL----------DVMRKEFVANV 378 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+EL++P+T I +++ L SK+ K +V+ I+ +T + LV+D+L L+ +D Sbjct: 379 SHELKTPITTIRSYSETLLDSKMEPDEVKH--FVKIINRENTRMGRLVSDLLQLSNIDYK 436 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 Y I D+L++ + ++ + E N I + + + ADR L QI I+S Sbjct: 437 TSNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISLEIPMDIRNIYADRHALDQILMNIIS 496 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---G 753 NA+ ++ +G + + A + + V++NG IPE +F RF +G+ R G Sbjct: 497 NAIKYTDEGGKIKISATSNYFNVNIIVEDNGIGIPESDLPRIFERFY-RVEKGRSRAMGG 555 Query: 754 VGLGLSIVESFINLHGGHVSISS 776 GLGLSI GG + I S Sbjct: 556 TGLGLSIARELTLSMGGDIKIDS 578 >gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1334 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 126/241 (52%), Gaps = 14/241 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ +Y Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 810 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ + LL L+NDILDL+ V+AG M ++ + L L+ V+ + + ++ Sbjct: 811 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVELRRLIEYVEATFRPMTMQKSLDF 870 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---------GD 718 V + G + D RL Q+ +LSNA+ F+ +G + ++ A D+ G Sbjct: 871 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGEVRLRIEPAPDDEVPSGVLRGGP 930 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F V++ G IPE +++F F R+ G GLGLSI +L GG V++ Sbjct: 931 VVAFRVQDTGVGIPEQHLEAIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 990 Query: 776 S 776 S Sbjct: 991 S 991 >gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus degradans 2-40] gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 1109 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 15/231 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L KNEA + K+ F+ +S+E+R+P+ ++G L+ S SL +Q + + Sbjct: 406 LAAKNEA-ESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNS---SLTPEQERKLLLAQ 461 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S LL+++NDILD + V+AG ++L + + LL++V QS E I + V+ D Sbjct: 462 SSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIEL-VLDD 520 Query: 675 GKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NG--DFIFSVKNNG 727 LG V D RL QI + +LSNA+ F+S+G +I++A D NG SV + G Sbjct: 521 IGLGGKVLRGDPSRLRQIINNLLSNALKFTSQGE-IIVRAKLDSEINGLNQLRCSVTDTG 579 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IP D +F+ F RR G GLGLSI + + GG + + S Sbjct: 580 IGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVS 630 >gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] Length = 583 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 164/348 (47%), Gaps = 42/348 (12%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EGV + RI+ N A ++ + P T IR T + +D Sbjct: 250 MVEGVVILDSRNRIESCNQAIEAILE------RPETEIRE--KTLLEAFLNAD----LQN 297 Query: 503 IITSFDDERKSLQGTLEL--LSDSVLEYSIIP---LPNA--QTMLTFVNVTDSVRAERAL 555 + F ERK + + L V++ SI LP+ +TML F +VT Sbjct: 298 ALDRFRMERKPVLQEIRLGRKDPRVVDVSISAIKDLPDGVEKTMLVFHDVT--------- 348 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYI 613 L+K ++I+ FV +V++E+++PLT IIGF L+T G+L+ +++ ++++ I Sbjct: 349 -----RLKKLEQIRTDFVANVTHEIKTPLTAIIGF---LQTLLDGALDDRETARKFLQTI 400 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + ++ L LV+D+L L++++ L+ + ++ L+ + + NI + V Sbjct: 401 ATNAERLSRLVDDLLTLSSIELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVDL 460 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF-IFSVKNNGSSIP 731 + +ADR R QI +L NA+ F+ G V + + + G+F I V + G IP Sbjct: 461 PEAFLNILADRDRAAQILMNVLHNAVKFTPAGGIVTVSGSEEEKGNFVIIQVVDTGIGIP 520 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + RF V A + G GLGLSIV+ + HGG + I S+ Sbjct: 521 PREIPRLGERFYRVDKARSRELGGTGLGLSIVKHLMAAHGGKMRIEST 568 >gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 973 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 5/219 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVEYISASSTI 619 R+ + +K+ FV +VS+ELR+PLT+I G L+ K S L + + +++ Sbjct: 488 REVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVSLSNTER 547 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ L+NDILD+A ++ G ++L T+ + DL + + + I + L S Sbjct: 548 LIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDLQPGLPS 607 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +ADR R QI +LSNA+ FS +V+L A D FSV++ G I + + +F Sbjct: 608 VLADRDRSTQILINLLSNAIKFSVGSQSVLLSARTDGSMVYFSVRDWGRGIDLENQERIF 667 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +FV R G GLGLSI ++ + GG + + S Sbjct: 668 QKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLES 706 >gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 945 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 13/281 (4%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIK 569 S +G LE + D V + + AQ + +F + + ER L + EA A+ K Sbjct: 219 PSCKGDLEQVVDLVETTTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAK 278 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ ++S+E+R+P+ ++G T+LL ++ +L KQ E + S T L++++N+ILD Sbjct: 279 SQFLANMSHEIRTPMNGVLGMTELLLST---ALTQKQRSLTETLHRSGTGLMDIINEILD 335 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688 + ++AG +KL L + + A ++ + + + + D RL Sbjct: 336 FSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLR 395 Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QI ++ NA+ F+ G + + N F +++ G IPE +F F Sbjct: 396 QILLNLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQ 455 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 + R+ G GLGL+IV+ L GG V + S S +G T Sbjct: 456 ADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGST 496 >gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 806 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 128/237 (54%), Gaps = 13/237 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQ 608 +A++ L E + A+ KN F+ +S+++R+P+ IIG T L ++L + K+ Sbjct: 395 QAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQL---ARLHTGEEKRLKD 451 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+E I+ +ST LL+L+N++LD++ +++G +KL + LN LL +V + + + + Sbjct: 452 YLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLLEDVVEMVRISLDQKCQS 511 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIF 721 + V I +G + D +RL QI IL NA ++ + + + K + G + F Sbjct: 512 LSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISIRLNELNKMTQTMGTYCF 571 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +++ G + + + +F F ++ + G GLG++IV++ +++ GG + I S Sbjct: 572 IIEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVKNLVSMMGGDIQIES 628 >gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 613 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 20/237 (8%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D +K+ V VS+ELR+PL++I GFT+L+ + L S++ Y++ I + L LVN Sbjct: 383 DRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLK--ESRRELYLKTIHDEAKRLSYLVN 440 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-----TKMHENNIRIKVISDGKLGSF 680 D LDL +++G + + DL V S+A T HE I D F Sbjct: 441 DFLDLQKMESGKQAFEWEPV---DLYQLVTDSVAFYQETTDRHELFIDADTEQD-----F 492 Query: 681 V--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + AD + + Q+ +LSNA+ +S G +++ R + + + V+++G IP + Sbjct: 493 IIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHL 552 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792 F +F V N+ R + G GLGL+I + H G + + S +T C +P SKE Sbjct: 553 FGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSKE 609 >gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 845 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 27/257 (10%) Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++AL E+N L++A + K+ F+ ++S+E+R+PL IIGF+DLL+T + Sbjct: 339 QKALAEQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL---VRDY 395 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K Y+ I +S LL L+NDILDL+ ++A ++L + L L+ E+KQ + + + Sbjct: 396 KSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQ 455 Query: 665 NNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 NI + V SD L D RL QI ++ NA+ F+ KG I N D++ Sbjct: 456 KNIELITDVSSDIPL-LIEFDEIRLRQILFNLVGNALKFTQKGYIKI----TVNCDYLDL 510 Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 V++ G IP D +F F + R G GLGL+I + + GG + Sbjct: 511 NKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTI 570 Query: 773 SISSSDEGVTTINCRIP 789 S+ S E +T P Sbjct: 571 SLHSESEKGSTFLMIFP 587 >gi|217960662|ref|YP_002339226.1| sensor histidine kinase [Bacillus cereus AH187] gi|217064570|gb|ACJ78820.1| sensor histidine kinase [Bacillus cereus AH187] Length = 458 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1] gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1] Length = 778 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGNPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 482 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 10/234 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618 E + ++++IK+ F+ +S+ELR+PLT I G+++ L + G + ++++ + I+ + Sbjct: 236 EEIVRSNQIKDDFISSISHELRTPLTGIKGWSETLTS---GGFDPEETKIGIGIIAKETD 292 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L+ LV +ILD + + + MKL + L +LL E ++ K + +I++K + D G Sbjct: 293 RLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKAEQKHIQLK-LEDKTDG 351 Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735 + + D RL Q+F ++ NA+ FS + S + L R + + + V ++G I E+ Sbjct: 352 TAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVKVDVIDSGIGISEEYL 411 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K V +RF H+G G GLGL+I + + LH G + I S TT++ +P Sbjct: 412 KKVKDRFFQVNHQGG--GTGLGLAISQQLVELHHGEMEIQSELGVGTTVSVILP 463 >gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1559 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 11/265 (4%) Query: 534 PNAQTMLTFV--NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNII 588 P+ Q+ + + V +V A E + E+L D K F +VS+E R+PLT I+ Sbjct: 321 PDYQSFFSLIASQVATAVANALAFAEQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLIL 380 Query: 589 G-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 G +LL +L + + ++ + +S LL LVN +LD + ++AG + ++ + L Sbjct: 381 GPLEELLSEPARSALPADAREQLKVVHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDL 440 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706 + ++ + + + +R++V + DR+ +I +LSNA F+ G Sbjct: 441 PEFTADLVAVFRSAIEKAGLRLQVDCPPAPFPALVDREMWEKIVFNLLSNAFKFTRHGEI 500 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 V L F V++ G IP + VF RF + +AH G G+GLS+V+ Sbjct: 501 EVSLHCL--GPTFELRVRDTGLGIPPESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQEL 558 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + LHGG VS++S T ++ IP Sbjct: 559 VRLHGGTVSLTSEVNVGTIVSVTIP 583 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 29/247 (11%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ERA ++EA+ A K+ F+ +S+ELR+PL+ ++ LL + S Sbjct: 1163 VELERA---RDEAV-AASRAKDDFLAALSHELRTPLSPVL----LLASDAAADPQLPPSV 1214 Query: 609 YVEY--ISASSTILLNLVNDILDLATVDAGIMKLNY----STIVLNDLLNEVKQSIATKM 662 ++ I S + L++D+LDL + + L+ + + L D L V+ K Sbjct: 1215 RADFETIRKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALRDALINVRAEFEAK- 1273 Query: 663 HENNIRIKVISD-GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD 718 RI ++ D FV AD RL Q+ +L NA+ F+ G V + + D+ Sbjct: 1274 -----RIGLVLDLSPEPQFVRADPVRLQQVIWNVLKNAVKFTPAGGRVTITSRIDHERRR 1328 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVS 773 + +V + G + + F F H G + G+GLGL+I + LHGG ++ Sbjct: 1329 LVLAVADTGIGMTAGEIERAFEAFAQGDHAGSGGSHRFGGLGLGLAISRRVVELHGGSIT 1388 Query: 774 ISSSDEG 780 S G Sbjct: 1389 AQSPGRG 1395 >gi|115375522|ref|ZP_01462781.1| SdeK [Stigmatella aurantiaca DW4/3-1] gi|310818117|ref|YP_003950475.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367477|gb|EAU66453.1| SdeK [Stigmatella aurantiaca DW4/3-1] gi|309391189|gb|ADO68648.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 392 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 19/256 (7%) Query: 540 LTFVNVTDS------VRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 L NVTD+ VR ERAL + E + + + F+ + ++LR+PL+ ++ Sbjct: 115 LWLKNVTDARCKDSKVREALERALA-REERMAEEAAFRERFIGVLGHDLRNPLSAVM--V 171 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDL 650 + + GSL+S Q + + I AS+ + +++DILDL +G + L + L+ + Sbjct: 172 SVRALCRYGSLSSTQQELGQRIEASAGRMSKMISDILDLTRARQSGGIPLFLMPMQLSTM 231 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +V ++ + I D + V D +RL Q+ S ++SNA++ + VI+ Sbjct: 232 CQQVVGELSAASPDRCILYDAQGDSE---GVWDAERLAQVLSNLVSNALEHGGEEVPVIV 288 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRRGVGLGLSIVESFIN 766 ++ V N G IP D ++F F + + +RRG+GLGL IV+ + Sbjct: 289 RSYSQGDMQALEVHNPGPPIPADRLATLFEPFQQGSPLAEGKRKRRGLGLGLYIVKELVQ 348 Query: 767 LHGGHVSISSSDEGVT 782 HGG VS+ S+ EG T Sbjct: 349 AHGGQVSVHSAGEGTT 364 >gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] Length = 850 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 116/215 (53%), Gaps = 10/215 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG + LL+ + Q +Y+ ++ SS LL+L+NDIL Sbjct: 247 KSEFLANMSHEIRTPMNGIIGLSSLLQEM---DMPKDQKEYINMLNISSLSLLDLINDIL 303 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D + ++AG ++L ++++ L +L EV+ K E +I + D ++ + D +L Sbjct: 304 DFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDATQL 363 Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+ + ++SNA+ F+ G T + F V ++G + DM +VF++F Sbjct: 364 RQVLNNLVSNAIKFTHTGYVHLHTQLETETDTETTIRFEVIDSGIGVSVDMHDAVFDKFQ 423 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGLSI ++L GG + I+S Sbjct: 424 QADGSTTRKYGGTGLGLSICRQIVHLMGGEIKINS 458 >gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 456 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 3/236 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + + K +++KN FV VS+ELR+PLT+I G+ ++T Q+ +E I Sbjct: 220 ALNFMADEILKNEKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFSDKEELQTG-LEII 278 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L +V ++LD + +G + L + + + + +K+ + + NI V Sbjct: 279 ENESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNINFSVKV 338 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + + D R+ Q+ + +L NA F+ +G V LKA + + I V + G IPED Sbjct: 339 QDNMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMIVDDTGIGIPED 398 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V +F + + G+GLSI + ++LHGG + I+S T I IP Sbjct: 399 ELPKVTEKFFKG--KSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEITLTIP 452 >gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 635 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L E + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 243 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 302 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 303 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 359 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++EV + KM + +++ VI + DR R+ Q+ LSNA+ + +GS + Sbjct: 360 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 417 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 418 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 475 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S +T +P+++ Sbjct: 476 GRIEVESELGQGSTFILYLPNRQ 498 >gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10] gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10] Length = 508 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L++ +E++ F+ +VS+ELR+P+T+I GF + + + KQ Y+ + + Sbjct: 271 EDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPP--EKQRGYLTIVRDETNR 328 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LDLA +++G + L+ +N+L+ + T + N++I+ D Sbjct: 329 LNRLVNDLLDLARMESGELTLSMKPFDINELIRICVIKLETLITSKNLQIEANFDVDSMM 388 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD+ + ++ +L NA+ FS++ +I++ A++ SVK+NG I D K ++ Sbjct: 389 VLADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKEKVFISVKDNGIGIDSDDKKRIW 448 Query: 740 NRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 +RF S+ RG+ + G GLGL+IV++ + H + + S Sbjct: 449 DRFYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDILLES 487 >gi|325291777|ref|YP_004277641.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325059630|gb|ADY63321.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 743 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 11/254 (4%) Query: 536 AQTMLTFVNVTDSVRAER-ALTEK-NEALR--KADEIKNSFVQHVSYELRSPLTNIIGFT 591 A + L ++ V ER AL E+ N LR KAD K + VS+E+R PL+ ++G Sbjct: 200 ASSRLLISSIARDVTEERLALGERENARLRAEKADAEKARLLATVSHEIRLPLSGMLGMN 259 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL +KL N +Q Y++ + S L+ LV D+LD +T++AG KLN L L+ Sbjct: 260 HLLSQTKL---NEEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFKLNPRAENLRRLI 316 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + +A + HE I I + ++ D RL Q+ +L NA+ F+ G V++ Sbjct: 317 ESIVEMLAHRAHEKGIEITSFVTPDVPDYLDFDPARLRQVLFNLLGNAVKFTQVGG-VVI 375 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769 +A G+ +V++ G + + +F F Q+ G GLGL+I + G Sbjct: 376 RARMVEGELHITVEDTGPGMSQAEQARIFGEFEQAGPMSQQSGGTGLGLAISARIVREFG 435 Query: 770 GHVSI-SSSDEGVT 782 G +++ S EG T Sbjct: 436 GSLTVFSRKGEGST 449 >gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 637 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L E + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++EV + KM + +++ VI + DR R+ Q+ LSNA+ + +GS + Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S +T +P+++ Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500 >gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus DSM 14838] Length = 755 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 10/250 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N T + + L E + +D +K++F+ ++S+E+R+PL I+GF++LL S Sbjct: 371 NNTKWEKMAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDS---DDP 427 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y I +++ +LL L+NDILDL+ +++GI+ L L NE+ + +K+ Sbjct: 428 DEKKEYWHIIESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIP 487 Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 N ++++ D D RL Q++ L+NA+ ++ G + + +G F Sbjct: 488 --NADVELVQDNPCPECWIFLDSNRLKQVWMNFLTNAVKYTRSGYIRMGYSVEKDG-IRF 544 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V++ G+ IP+++ VF RF Q G GLGL+I + + GG + +S Sbjct: 545 YVEDTGTGIPKELQDRVFGRFQKLNEFVQ--GTGLGLAISRAIVEAAGGEIGFTSEQGIG 602 Query: 782 TTINCRIPSK 791 +T +P + Sbjct: 603 STFWAWVPCE 612 >gi|209526146|ref|ZP_03274677.1| histidine kinase [Arthrospira maxima CS-328] gi|209493402|gb|EDZ93726.1| histidine kinase [Arthrospira maxima CS-328] Length = 335 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 16/237 (6%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ + S+ELR+PL +IGF L+ + ++ +++E ++ LLNL+ND+ Sbjct: 95 LKSEFLANTSHELRTPLNGMIGFLQLV-LDGMADDPEEEREFIEQAHQAAIHLLNLINDV 153 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685 LD+A ++AG M + + + +++++ E++ I ++ + N++ + + + + Q Sbjct: 154 LDIAKIEAGKMDIELALVKVDEVIGEIEHFIRPQVEQKNLKFTIQPEAVNSQIIVYGNYQ 213 Query: 686 RLLQIFSKILSNAMDFSSKG----------STVILKAARDNGDFIFSVKNNGSSIPEDMC 735 R+LQ+ L NA+ F+ KG V+++ + G F V + G +P + Sbjct: 214 RILQVILNFLENAIKFTHKGGINISIGIIRKNVMIQNQKFPGFVEFRVVDTGIGVPIEKQ 273 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 +F+ F V + + Q G GLGL I + + GG V S EG+ +T+ IP Sbjct: 274 DRLFHAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIP 330 >gi|254829515|ref|ZP_05234202.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165] gi|258601930|gb|EEW15255.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165] Length = 459 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D ++ D + L Q++S +L+NA+ F+ +G + ++ D + V+++G I + Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398 Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 DM K +F+RF +N R + G GLGLSI + I LH G V++ SS E TT ++P Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457 >gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 980 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 16/245 (6%) Query: 541 TFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +F ++ +RA +AL ++N L++ D++KN F+ + S+ELR+PL IIG D L Sbjct: 427 SFNSMAKQLRASFKALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLLDGAT 486 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----K 655 G L + I S L NLVN+ILD + + + L ++ + +++ V K Sbjct: 487 GPLPEPTRTNLVMIVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVVFTLSK 546 Query: 656 QSIATK--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 I K NNI + L AD RL QI ++SNA+ F+ G I Sbjct: 547 PLIGKKDLTFINNISV------DLPPVYADENRLQQILHNLVSNAIKFTDSGRIEISAEI 600 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771 ++N + SVK+ G I ED + +F F R G GLGL++ + + LHGG Sbjct: 601 KENL-LVTSVKDTGIGISEDKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGT 659 Query: 772 VSISS 776 + ++S Sbjct: 660 IHVAS 664 >gi|187923279|ref|YP_001894921.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gi|187714473|gb|ACD15697.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 548 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 13/244 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E+ + E +E L A + FV VS+ELRSPL+ I+ +TDLL+ + + S ++ Sbjct: 312 SEKRMREHSERLAMA---MDHFVTTVSHELRSPLSAIMSWTDLLQRA---ADPSHLARAT 365 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 IS ++ L ++V+D+LD + G + +N + L L + + + +MH ++ Sbjct: 366 SVISRNARQLSHMVDDLLDSGAIVTGKLSVNLQPVDLGALAGIIAEDM--RMHAEAKGLR 423 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +I+D + V AD R+ Q+ ++SNA+ FS +G TV L D +V++ G Sbjct: 424 LIADDLASATVLADEGRMKQVVWNLVSNAVKFSPQG-TVELSVRADAECVEVAVRDTGLG 482 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 + + + +F RF G R G+GLGL +V++ ++LHGG V+ S G T Sbjct: 483 LDRESMERIFERFQQFGADGSGRVAGLGLGLWLVKNLVDLHGGTVTAESPGPGQGATFRV 542 Query: 787 RIPS 790 R+P+ Sbjct: 543 RLPA 546 >gi|327253391|gb|EGE65029.1| TMAO reductase sytem sensor TorS [Escherichia coli STEC_7v] Length = 904 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ + IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLLEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|320105884|ref|YP_004181474.1| histidine kinase [Terriglobus saanensis SP1PR4] gi|319924405|gb|ADV81480.1| histidine kinase [Terriglobus saanensis SP1PR4] Length = 565 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 3/210 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D++KN F+ VS+ELR+PLT+I G LL LG+ + K + ++ L+ L+N Sbjct: 59 DDVKNEFISTVSHELRTPLTSIRGALGLLSAGLLGNNDPKAQNLLRIALTNTDRLIRLIN 118 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 DILDL + +G L S L+ +L + E ++ I++ + L S + AD Sbjct: 119 DILDLERIQSGRSPLRTSACSLSTILERSVDDLMPLATEAHVHIELSAPADLSSGIQADP 178 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 R+ Q+ + +LSNA+ FS GS++ +K + V + G IPE +F+RF Sbjct: 179 DRIGQVVTNLLSNAIKFSDPGSSIRIKTEIHATTILLRVIDAGRGIPEGKLDLIFDRFQQ 238 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 V + Q+ G GLGL+I + HGG + Sbjct: 239 VEPSDSRQKGGTGLGLTISRGIVQQHGGRI 268 >gi|251779712|ref|ZP_04822632.1| sensory box histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084027|gb|EES49917.1| sensory box histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 547 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%) Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + +KNE L++ +E+++ F ++S+ELR+PL II LL+ N + ++++ Sbjct: 271 VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRMY-----NYNEEEFLK 325 Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Y IS + + +L L+N+I+D+ DAG K+N+ + L+ V SIA Sbjct: 326 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIVSLVENVTLSIAEYEKA 385 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722 I +D + D + + + +LSNA+ F+S + + +N D S Sbjct: 386 RTRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVNIESENNDKYLSIT 445 Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +K++G IP+D KS+F RFV + R G G+GLS+V+ +N H G + + +++ Sbjct: 446 IKDDGIGIPKDFRKSIFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHAGEIYLKDTEK 504 >gi|228907601|ref|ZP_04071458.1| hypothetical protein bthur0013_17680 [Bacillus thuringiensis IBL 200] gi|228852093|gb|EEM96890.1| hypothetical protein bthur0013_17680 [Bacillus thuringiensis IBL 200] Length = 288 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 128/238 (53%), Gaps = 5/238 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + QY Sbjct: 45 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 103 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + + ++ + + ++ Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPLLDDADMSF 163 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 164 CINGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKKILIQVSKRDMNVEIEIKNFGQC 222 Query: 730 IPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 IP++ VF +F +H G G+GL+I S LH G +++ S+D E V TI Sbjct: 223 IPDENLPYVFEKFYRGEKSHSSHMGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 280 >gi|77458389|ref|YP_347894.1| multi-sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gi|17980436|gb|AAL50631.1|AF418994_1 bacteriophytochrome [Pseudomonas fluorescens] gi|77382392|gb|ABA73905.1| multi-sensor signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 745 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609 R + + EA+R DE+ V VS++LR+P+T I +++ S G S++ S Sbjct: 509 RQVRREQEAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISTA 564 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + ++ + L+ D+LD + +DAG + + + + E + +A + +I I Sbjct: 565 IDTMQQAAGRMNTLLEDLLDTSKIDAGRYTIAPQKLDVAQMFEEAQSLLAPLALDKDISI 624 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +D L S AD +RL Q+ S ++ NA+ F+ + TV + A D +F+V+++G Sbjct: 625 SFEADPDL-SIHADPERLFQVLSNLVGNAIKFTPRLGTVDVYAKSVGDDIVFTVRDSGEG 683 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP+D VF+R+ + G G GLGL I + + HGG + ++ S+ G Sbjct: 684 IPKDHLPHVFDRYWT-VKEGNPTGTGLGLYITQGIVEAHGGQI-VAESEPG 732 >gi|300694671|ref|YP_003750644.1| capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsc) [Ralstonia solanacearum PSI07] gi|299076708|emb|CBJ36047.1| putative capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsC) [Ralstonia solanacearum PSI07] Length = 1098 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 14/251 (5%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 ++ + V++ + E L E + +A+ K+ F+ V +E+R+PL IG +LL Sbjct: 481 SSAVLFGLVDMNERKANEILLVEAKQTADEANRAKSMFLAIVGHEIRTPLHGAIGHLELL 540 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S SL+ +Q ++V+ S S LL LVND+LD ++A ++++ + N++L Sbjct: 541 ARS---SLSLEQREWVDMTSRSFDALLTLVNDLLDSTKIEANALQISPVPMCPNEVLERC 597 Query: 655 KQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709 +S + + + I+D D QRL QI +LSNA F+ +G+ I Sbjct: 598 ARSFGAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITISSRC 657 Query: 710 LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 LK R++G F V + G IP M ++FN RR G GLGL + + Sbjct: 658 LK--REDGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLA 715 Query: 766 NLHGGHVSISS 776 +L GG +S+ S Sbjct: 716 HLMGGRISVRS 726 >gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1287 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 27/254 (10%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L + E A + K+ F+ ++S+E+R+P+ IIG + L S L+ +Q Y+ Sbjct: 617 ERDLLQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLALRS---GLDRRQHSYLT 673 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669 I ++ LL ++NDILD + ++A ++L + L D+L+ + + E +++ Sbjct: 674 RIDGAARSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTF 733 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------------LKA 712 ++ D L S D RL Q+ + ++SNA+ F+S G V+ L A Sbjct: 734 QLDPDTPL-SLKGDSMRLSQVLTNLISNAIKFTSHGEIVVSVSPGTSNTAHEAIPECLPA 792 Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 N +FSV+++G + +D +F+ F RR G GLGLSI + + + G Sbjct: 793 KGYNQVCLMFSVRDSGQGMDQDQASRLFDAFFQADSSITRRFGGTGLGLSISKQLVEMMG 852 Query: 770 GHVSISSSD-EGVT 782 G + + S EG T Sbjct: 853 GSIQVQSQPGEGST 866 >gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 613 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ +E+K+ + VS+E+R+PLT I+GFTD L S +Q Y+ I S L Sbjct: 387 QRIEELKDDMLSSVSHEMRTPLTAIMGFTDYLLKSN--DRPERQKDYLSIIQQQSERLKE 444 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV + L+L + AG + + LL+ V ++ + IRI+ D L Sbjct: 445 LVENHLNLQRLRAGHGVGAIHPVEVLPLLHGVSNMFSSARGRDRIRIQCPED--LPPVRG 502 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L + +LSNA+ +SS+ ++L A R + + VK+ G IP + ++F+RF Sbjct: 503 DENQLYRALYNLLSNAIKYSSEDQEILLGARRADDAAVLFVKDQGVGIPNEHQATIFDRF 562 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V G RG GLGLS+V+ I H G + + S + ++P Sbjct: 563 FRVPAGDHGM-RGSGLGLSLVQEIIKAHNGRIWLDSVPGQGSCFYLKLP 610 >gi|313139989|ref|ZP_07802182.1| sensor protein [Bifidobacterium bifidum NCIMB 41171] gi|313132499|gb|EFR50116.1| sensor protein [Bifidobacterium bifidum NCIMB 41171] Length = 355 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R E E L+ AD+++ V +VS+ELR+P++ + + + + +E Sbjct: 102 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 157 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670 I + L +L+ +LDL+ ++AG LN L+D L+E + IA H ++I + Sbjct: 158 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 217 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728 V SD + D+ RL Q+F+ I++NA+ S+ G++V+++A D G + +V N GS Sbjct: 218 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 274 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP + +F RFV + + G G+GLSI LHGG V + G Sbjct: 275 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 328 >gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 899 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 13/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K AL +A IK+ F+ ++S+ELR+PL +IGFT LLKT L+ Q Y+ I S Sbjct: 277 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFTRQLLKTP----LHDNQKDYLRTIERS 331 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 ++ LL+++NDILD + ++AG M L+ L D L+E ++ ++ + + V D + Sbjct: 332 ASNLLSIINDILDFSKLEAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVVEIDER 391 Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIP 731 + S D R+ Q+ + ++ NA+ F+ KGS + L A ++ + + V + G I Sbjct: 392 VPDSLCGDVMRIQQVITNLMGNAIKFTDKGSVRLSLDLADESAERVLLRAEVSDTGIGIA 451 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 E+ +F F RR G GLGL I + +N G + +S Sbjct: 452 EEQQPMLFQAFGQADSSVSRRFGGTGLGLVITKRLVNQMEGQIGFTS 498 >gi|300812473|ref|ZP_07092899.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496534|gb|EFK31630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 521 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L NE ++ +E ++ F+Q V++E+R+PLT I G + +K + + +S ++ Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + L+ LVN+ LD + +G +++ S ++N+V+Q + +N +I + Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGNKIILD 382 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + AD+ R Q+ + NA+ F++ G T+ L+ R FSV++ G + + Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440 Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + K +F RF + A G GLGLSIV S + HGG + IS EG T Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495 >gi|78062490|ref|YP_372398.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77970375|gb|ABB11754.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 672 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ + VS+ELR+PL I G+ ++L+ L Q V+ I S+ L ++V Sbjct: 292 NRLKDELLATVSHELRTPLNVIYGWVEVLRNVDGQGL---AQQAVDAIDRSARSLSHMVA 348 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD +++ G ++L + L ++ + + + + + + ADR+ Sbjct: 349 DLLDASSLATGRLRLERVPVDLVRVVRDTTRELDATAQASGLELSTHYAMPTCVIPADRE 408 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743 R+ Q+ S +LSNA+ F+ G +++ AR SV + G I + +F F Sbjct: 409 RVRQVLSNLLSNAIKFTPPGGRIVVSLARAGERVRLSVADTGQGIAPEYLPHLFETFSRP 468 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790 A +RG+GLGLSIV + LHGG V +S+ G TT+ +P+ Sbjct: 469 ERAFASPKRGLGLGLSIVRNIAQLHGGDVVATSAGPGRGTTVTVTLPA 516 >gi|288942367|ref|YP_003444607.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897739|gb|ADC63575.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 721 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 9/260 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 PN L + VT +R E+A +ALR+AD K+ F+ + +ELR+P+ I ++ Sbjct: 323 PNTGRPLHYATVTRDIRTEKA---AEQALREADRRKDEFLAVLGHELRNPMAPIRHAVEI 379 Query: 594 LKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+ LG + ++ +E + + + L++D+LD++ + G ++L + + +L+ Sbjct: 380 LRA--LGVDGDPRIRWAIEVLDRQTAHMGRLLDDLLDVSRIVQGRIELEPVELRVRELVQ 437 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + M E+ R + D RL QI IL NA +++ G + + + Sbjct: 438 QAADGVRALMEEHRHRFVCRLPAPGWRVLGDPVRLSQILLNILVNAANYTPPGGEIRIDS 497 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + + V++NG + + S+F F H G G+GLGL+I +LHGG Sbjct: 498 RIEGDSVLIQVRDNGQGMTAEQLDSLFGLFTRGPHAGDADSGGLGLGLAIARRLADLHGG 557 Query: 771 HVSISSSDEGVTTINC-RIP 789 + S G T C R+P Sbjct: 558 CLEARSEGLGRGTELCLRLP 577 >gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] Length = 2349 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 21/250 (8%) Query: 550 RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A+ A E N ++ A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ Sbjct: 1832 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1888 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YVE I + LL L+NDILD + ++AG MK++ I L + EV +++ E Sbjct: 1889 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1948 Query: 667 IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720 + + I L + D RL QIF +LSN+ F+ KGS TV D + I Sbjct: 1949 LETVEDLDSIDPNLL--VMGDPVRLHQIFMNLLSNSYKFTPKGSVTVQAIVEEDTPEQIR 2006 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774 V + G I E+ +F F S A R G GLGLSI ++ I ++ GG + + Sbjct: 2007 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2065 Query: 775 SSSDEGVTTI 784 S + TT+ Sbjct: 2066 QSKEGEGTTV 2075 >gi|254420261|ref|ZP_05033985.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196186438|gb|EDX81414.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 848 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 10/228 (4%) Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 A R+A+E K+ F+ ++S+E+R+PL ++ D L S+ G L ++ + VE I +S+ Sbjct: 456 ARRRAEEASRSKSEFLANMSHEIRTPLNGVVAMADAL--SRAG-LEPREREMVEVIRSSA 512 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L L++DILD + ++AG + L S L D + + E + ++V + + Sbjct: 513 VTLERLLSDILDTSKIEAGQIVLERSVFDLGDTVRGAAALYRPRADEKGVALRVEVEPTI 572 Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 G+ D R+ Q+ S ++SNA+ F+ GS V+ A D F+V + G Sbjct: 573 EGAVEGDVVRVRQVLSNLISNALKFTETGSVVVTAVAVDEDRVRFTVSDTGCGFDAGQKG 632 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGV 781 +FNRF RR G GLGL+I + L GG + DEG Sbjct: 633 RIFNRFQQADGSITRRFGGTGLGLAISRDLVALMGGVLDCDGRPDEGA 680 >gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1820 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 14/234 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + A A+ K+ F+ +S+E+R+P+ +IG T LL ++L S+Q +VE + Sbjct: 1128 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL---TSQQRDFVETV 1184 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL+++NDILD + +++G ++L + + +V +A K + +I + + Sbjct: 1185 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1244 Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVK 724 ++ +A D RL QI + +L+NA+ F+ +G V+ + ++ + IF++K Sbjct: 1245 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKTKNCCEIIFTIK 1304 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I + +F FV R+ G GLGL I + + GG++ + S Sbjct: 1305 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1358 >gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H] gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H] Length = 1000 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 A ++ADE K+ F+ +S+E+R+P+ +IG +LL +KL S+Q +Y + I S Sbjct: 459 AKQQADEANRAKSVFLASMSHEIRTPMNGMIGTLELLTDTKL---TSEQQKYAQTILYSG 515 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+++NDILD + ++AG + L+Y I L L +V + + ++++ G + Sbjct: 516 ESLLDILNDILDYSKIEAGHIALSYRAIDLGKLGEDVVHLMRARAQNKSLQLHFEKKGNI 575 Query: 678 GSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIP 731 ++ VAD +L QI +++NA+ F+ +GS V+ D + + FSV + G I Sbjct: 576 ENWRVADLGKLRQILINLINNAIKFTQRGSIVLSIGVNDESSSGDSEVTFSVTDTGCGIA 635 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +D VF F + G GLGL+I + ++ G +S+ S + + IP Sbjct: 636 KDKQADVFQAFTQVDNLQSAVGTGLGLAICQRLVSAMQGTLSLESEENRGSCFAFTIP 693 >gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 637 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 I P + + ++ D +R + L E + +AD +K+ F+ ++S+E+R+PL I+G Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F++++ L ++ +Y+ I +S +LL L+NDILDL+ +++G +++ ++ Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L++EV + KM + +++ VI + DR R+ Q+ LSNA+ + +GS + Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ V + G I ++ +F RF Q G GLGL I +S + G Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G + + S +T +P+++ Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500 >gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1309 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 13/222 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A + K+ F+ ++S+E+R+PL +IGFTDL LKT+ L Q QY+ ++ S+ LL Sbjct: 665 QASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTT----LTPTQHQYLTIVNQSANALLT 720 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 +NDILD + ++AG ++L + + +L ++ + I + + + + + F+ Sbjct: 721 TINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQTKGLEVLLNVAPDVPRFIY 780 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 D RL Q+ +L NA+ F+ +G T + G F+V++ G I DM + Sbjct: 781 TDSVRLKQVLVNLLGNAVKFTQQGEIELKVTATSVSEPGEGAIRFAVRDTGMGIRADMQQ 840 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+ F ++ G GLGL+I + L G + + S Sbjct: 841 KIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLELIS 882 >gi|159464805|ref|XP_001690632.1| hypothetical protein CHLREDRAFT_114537 [Chlamydomonas reinhardtii] gi|158280132|gb|EDP05891.1| predicted protein [Chlamydomonas reinhardtii] Length = 218 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 5/212 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E K+ F+ +S+ELR+PL IIG +D + G L K + + + S LL L+ND Sbjct: 6 ERKDEFLSAMSHELRTPLNGIIGLSDSMIAGACGPLPEKAVKTISTVKLSGKRLLQLIND 65 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 ILD A + G++ + + + + L+++V ++ + +R+ + + G + V D R Sbjct: 66 ILDAAKMKQGMLVIKHEKVDIKRLVSDV-LDLSLPLVRKGVRL-INNVGNVPKIVGDNGR 123 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++QI ++ NA F+ G TV + A G +V + G IP D +F F Sbjct: 124 IVQILYNLVGNATKFTRAG-TVSVSAGVVEGKVYITVSDTGVGIPPDKIDKIFEAFEQVD 182 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL +V+ + H G +S+ S Sbjct: 183 MSTTRRFGGTGLGLHLVKELVKAHSGRISVQS 214 >gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1358 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A A+ K F+ ++S+ELR+PL I+GF++LL+ G ++ Q ++ I+ S Sbjct: 882 DAAEAANRAKTIFLANMSHELRTPLNAILGFSNLLRE---GDVSEWQRNDLDIINRSGEH 938 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+LV+++LD+A ++AG L + L ++ +V + + + + L Sbjct: 939 LLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKGLALLHADSSGLPR 998 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA--RDNGDF--IFSVKNNGSSIPED 733 +V AD RL Q+ ++ NA+ F+ GS T+ L A D+G F F V++ G + + Sbjct: 999 YVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLTFYVEDTGCGVAPE 1058 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F FV ++G GLGL+I + + GG VS+ S+ + +P Sbjct: 1059 DHERIFEPFVQVGPAATKKGSGLGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVP 1114 >gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 969 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ E L E A+ K+ F+ +S+E+R+P+ +IG ++L +K L+ Sbjct: 574 DITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVLLETK---LD 630 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Y+E + + LL+L+N ILDL+ +++G M+L L+ ++ E Q + Sbjct: 631 QEQRHYIETLQHAGEALLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCR 690 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 + I + + + +++ D+ R+ QI ++ NA+ F+ +GS TV +++ +F Sbjct: 691 KQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVEIRSIEQEKTLLF 750 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 + ++G IP D +++F +F RR G GLGL+I + G + + S + Sbjct: 751 KITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEEG 810 Query: 780 GVTTINCRIPSK 791 + + +P + Sbjct: 811 QGSCFSFTLPCR 822 >gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402 065] Length = 615 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 2/230 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G ++LN + L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++ +I +LSNA+ F++ G + + + +K+ G IP D +S+F RF Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERF 535 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + + G G+GL +V+SF+ +H G V+I+S T ++P+ Sbjct: 536 FQIDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTINSELGKGTEFIIKLPA 585 >gi|228901738|ref|ZP_04065910.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL 4222] gi|228857870|gb|EEN02358.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL 4222] Length = 448 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 447 >gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 949 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 122/228 (53%), Gaps = 12/228 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A +K+ F+ ++S+E+R+P+ I+G L++ SL+ K +YVE + AS+ Sbjct: 304 KTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQ---SLDGKMRRYVETVDASA 360 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L++++ND+LD + ++AG + + L ++ EV + +A++ HE + + + ++ Sbjct: 361 NTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRV 420 Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731 + V D R Q+ + ++ NA+ F+ +G V++ A+ D +V + G I Sbjct: 421 PTGVVGDPDRFRQVLTNLVGNAIKFTDRGE-VLIDASTSQQDKATALIKLAVVDTGPGIA 479 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 D K +F F V + + G GLGL+I + + + GG V + S+ Sbjct: 480 PDDQKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDST 527 >gi|167647488|ref|YP_001685151.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349918|gb|ABZ72653.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 835 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + E+ L +A++ K+ F+ ++S+ELR+PL +I D L S ++ + Sbjct: 444 EERVAERTAELERANQAKSVFLANMSHELRTPLNGVIAIGDRLAEE---SDPERRRELAA 500 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670 +++S +L ++ DILD++ ++AG +LN + L L+ V + ++ Sbjct: 501 LVTSSGRLLEQVLGDILDVSKIEAGQFRLNPTPFDLAQLVGGVAELHRAAAEAKSLHFHW 560 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I G GS++ D R+ QI + +L+NA+ F+ G V+L R +G F+V + G Sbjct: 561 SIEPGVAGSYLGDSGRISQILNNLLANAVKFTVMGE-VVLSVERADGGLAFTVTDTGVGF 619 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + + + +F RFV R+ G GLGLSI + + GG + Sbjct: 620 DDTVRERLFKRFVQADQSITRQFGGTGLGLSICAALAEMMGGRI 663 >gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 1215 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 10/249 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L K + L + K+ F+ ++S+ELR+PL +++ + LL +K G+L+ KQ + Sbjct: 522 ASRELQRKADELERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKEGNLSEKQVGFA 581 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 ++ + LLNL+NDILDL+ V+AG ++ ++ + + DLL ++ + + + Sbjct: 582 RTMNDAGNDLLNLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFRPLAEQKGLAFQ 641 Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV------ 723 + + + ++ D QR QI +LSNA F+ G +L G+ I V Sbjct: 642 IKTGAGVPECISTDMQRTQQILKNLLSNAFKFTHNGGVEVLAGIPAPGENILPVPALAIA 701 Query: 724 -KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 +++G I + + VFN F R+ G GLGLSI G ++++S + Sbjct: 702 IRDSGIGISAEKQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQGDITLASREGE 761 Query: 781 VTTINCRIP 789 + +P Sbjct: 762 GSVFTVYLP 770 >gi|32477451|ref|NP_870445.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1] gi|32448002|emb|CAD77522.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1] Length = 718 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 7/240 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L ++ L + DE KN F+ +++ELR+PLT I DLL+ + + Q + Sbjct: 334 RELQKEKALLSEMDERKNRFLALLAHELRNPLTPIGNAVDLLR---FAAKDPNQVNEIST 390 Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S L+ L++D++D++ + G + L T+ ++D++ +++ + +E + Sbjct: 391 VLESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIR 450 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +D + V D RL Q+ + +L+NA ++ + + + +G +VK+NG I Sbjct: 451 RTDPEQSLHVHGDYVRLTQVVTNLLNNACKYTPPSGRIEISCGQVDGQVEIAVKDNGVGI 510 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + K +F F V + R G+G+GL++V+ + LHGG VS+ SD+ T RI Sbjct: 511 PPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVKQLVELHGGRVSLVDSDDTSTGSEFRI 570 >gi|325921207|ref|ZP_08183071.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548314|gb|EGD19304.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 477 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E + K F+ + +E+R+P+T ++G ++LL + SL++KQ Y E I + Sbjct: 194 KQELAEQGSLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYTESIRRAG 250 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 251 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFS-LEVGLL 309 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +LSNA+ F+ +G + L F V + G I + Sbjct: 310 GDITASGDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 369 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGHV + S Sbjct: 370 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELALAMGGHVEVIS 414 >gi|310287285|ref|YP_003938543.1| Sensory transduction protein kinase [Bifidobacterium bifidum S17] gi|309251221|gb|ADO52969.1| Sensory transduction protein kinase [Bifidobacterium bifidum S17] Length = 369 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R E E L+ AD+++ V +VS+ELR+P++ + + + + +E Sbjct: 116 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 171 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670 I + L +L+ +LDL+ ++AG LN L+D L+E + IA H ++I + Sbjct: 172 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 231 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728 V SD + D+ RL Q+F+ I++NA+ S+ G++V+++A D G + +V N GS Sbjct: 232 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 288 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP + +F RFV + + G G+GLSI LHGG V + G Sbjct: 289 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 342 >gi|307730084|ref|YP_003907308.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307584619|gb|ADN58017.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 525 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 134/257 (52%), Gaps = 20/257 (7%) Query: 550 RAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSK 605 RAE AL K+ ALR AD K+ F+ +++ELR PL + ++L + +++ + + Sbjct: 136 RAENALQAKDAAERALRVADRRKDEFLATLAHELRDPLGAMRTAVEMLMRDTQVAAAHKP 195 Query: 606 QSQYVEYISASSTIL-------LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 I + IL L +D+LD++ + G +++ + + L +L++V S Sbjct: 196 GGSERPGIGNALDILERQLGKAARLTDDLLDISRIAQGKIEIRRAPVHLQAILDDVVVSA 255 Query: 659 ATKMHENN----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 ++ ++ + + +I + + AD R+ QI +L+NA+ ++ G V L AAR Sbjct: 256 RARLPSHDPTHTLEVDLIPEPVI--VDADAVRIAQIVQNLLNNALRYTPSGGWVRLTAAR 313 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 ++G + V +NG I D VF F + A RGQ G+G+GL++V + LHGG V+ Sbjct: 314 EDGHAVIRVSDNGIGIAPDDLTRVFAMFGQAPAARGQG-GLGIGLALVRALAELHGGTVT 372 Query: 774 ISSSDEGV-TTINCRIP 789 SS+ G+ +T R+P Sbjct: 373 ASSAGHGLGSTFEVRLP 389 >gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] Length = 937 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 303 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 358 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + +++ Sbjct: 359 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQV 418 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 V D RL QI + +L NA+ F+ +G+ IL A R + + + G I E Sbjct: 419 VGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 478 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +F F RR G GLGL I E + GG +S S D G T Sbjct: 479 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGST 527 >gi|283797817|ref|ZP_06346970.1| histidine kinase [Clostridium sp. M62/1] gi|291074502|gb|EFE11866.1| histidine kinase [Clostridium sp. M62/1] gi|295091968|emb|CBK78075.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. [Clostridium cf. saccharolyticum K10] Length = 468 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + +I+ F + S+EL++P+T+I G+ +LL T + ++ ++ I + + Sbjct: 235 LEQEKQIRQEFFSNASHELKTPITSIRGYVELLDTPMADNAEMRKD-FLSRIKKEAVRMT 293 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L++DIL ++ +++G + I ++ E S+ E I+++ +D L Sbjct: 294 RLIDDILMISRLESGGAQAELKDIRTLEIAREAASSVEGMAKERRIQVETDADDFL--IC 351 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD +++ ++F+ +LSNA+ ++ G V L ++ D + V +NG IP++ +F R Sbjct: 352 ADARQMEELFTNLLSNAVKYNLDGGRVWLSLKKERKDMVLIVSDNGVGIPKESLGRIFER 411 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGV--TTINCRIP 789 F V ++ G GLGLSIV+ +N + G V +SS +EG T+ R+P Sbjct: 412 FYRVDKGRSRKQGGTGLGLSIVKHIVNFYHGTVKVVSSQEEGKRGTSFIVRLP 464 >gi|223413878|gb|ACM89298.1| ethylene receptor [Eriobotrya japonica] Length = 601 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 175 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 234 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 235 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 291 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + + ++ + + +D L + + D +RL+Q ++ NA+ FS +GS I + Sbjct: 292 PVASIKKLSVTLNIAADLPLYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 350 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ K +F +F R G G Sbjct: 351 SLRDFRAPDFFPVQSENHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQTLATRNSGGSG 409 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 410 LGLAICKRFVNLMEGHIWIESEGLG 434 >gi|187934523|ref|YP_001886057.1| sensory box histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187722676|gb|ACD23897.1| sensory box histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 547 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%) Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + +KNE L++ +E+++ F ++S+ELR+PL II LL+ N + ++++ Sbjct: 271 VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRMY-----NYNEEEFLK 325 Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Y IS + + +L L+N+I+D+ DAG K+N+ + L+ + SIA Sbjct: 326 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIISLVENITLSIAEYEKA 385 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722 I +D + D + + + +LSNA+ F+S + + N D S Sbjct: 386 RKRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVSIESQNNDECLSIT 445 Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +K++G IP+D KSVF RFV + R G G+GLS+V+ +N H G +++ ++E Sbjct: 446 IKDDGIGIPKDFRKSVFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHNGEINLKDNEE 504 >gi|85059258|ref|YP_454960.1| putative two-component sensor kinase [Sodalis glossinidius str. 'morsitans'] gi|84779778|dbj|BAE74555.1| putative two-component sensor kinase [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 134/256 (52%), Gaps = 11/256 (4%) Query: 538 TMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 T+ T + ++V AER AL E + +A++ K+S + +S+ELR+PL+ +G +LL+ Sbjct: 366 TLRTQYDNLENVVAERTRALNEAKQQAERANKRKSSHLTTISHELRTPLSGSLGALELLQ 425 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + +L KQ Q + LL+++N++LD + +++G + L+ L +L++ Sbjct: 426 MT---TLTDKQFQLADTARQCVFSLLSIINNLLDFSRIESGQLSLHIEETPLLPILDQAM 482 Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 +I + ++ ++ ++ D RL QI +L NA+ F+ G + L R Sbjct: 483 HTIQGPGQSKGLTLRTFVGKQVPLYLDIDGMRLRQILVNLLGNALKFTQSGG-IFLSVKR 541 Query: 715 DNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + IF+V ++G I PED K VF F + G +G GLGL+I + L GG ++ Sbjct: 542 RDQQLIFAVNDSGQGIAPEDQEK-VFAPFFQS--EGTMQGTGLGLAIAANLAKLMGGSLT 598 Query: 774 ISSSDEGVTTINCRIP 789 +SS+ T ++ +P Sbjct: 599 LSSTPGLGTCMSFIMP 614 >gi|330979424|gb|EGH78085.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1003 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ LG N + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A D + +F V ++G Sbjct: 645 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP + +F R+ S G RG GLGL I + + HGG + SS + + + + Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|227879193|ref|ZP_03997065.1| sensor histidine kinase [Lactobacillus crispatus JV-V01] gi|256849419|ref|ZP_05554851.1| two-component sensor [Lactobacillus crispatus MV-1A-US] gi|262046086|ref|ZP_06019049.1| two-component system sensor kinase [Lactobacillus crispatus MV-3A-US] gi|312976907|ref|ZP_07788656.1| sensor histidine kinase [Lactobacillus crispatus CTV-05] gi|227861196|gb|EEJ68843.1| sensor histidine kinase [Lactobacillus crispatus JV-V01] gi|256713535|gb|EEU28524.1| two-component sensor [Lactobacillus crispatus MV-1A-US] gi|260573416|gb|EEX29973.1| two-component system sensor kinase [Lactobacillus crispatus MV-3A-US] gi|310896235|gb|EFQ45300.1| sensor histidine kinase [Lactobacillus crispatus CTV-05] Length = 384 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK + K+ + Y A + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKAGVTSPEDQKKYVNIAYTKAEQ--MKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN + + + +L +V + +N I I++ + K + A Sbjct: 206 LANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAGFELEAEKNGIEIEIEARPKNLTIKA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + + L A N + V+NNG+ IP+ +F R Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGAPIPKKSLNKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI + ++LH G + S+E T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESNEKWTSFIIRLP 374 >gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1253 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 7/256 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLK 595 Q T+ +V A ++ EAL D K F +VS+E R+PLT ++G +LL+ Sbjct: 330 QLTATYNTAISNVYAYEQEQKRAEALAAIDRSKTLFFSNVSHEFRTPLTLMLGPLEELLQ 389 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 L Q VE ++ LL LVN++LD + V+AG ++ Y + L ++ ++ Sbjct: 390 QHGLDGHTRVQ---VEATHRNALRLLKLVNNLLDYSRVEAGRVQAVYQRLDLQEMTIDLA 446 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S + + + + + V S+ ADRQ +I +LSNA ++ +GS + ++ Sbjct: 447 SSFRSIIEKAGMELNVHCSPLSASYYADRQMWEKIVLNLLSNAFKYTLQGSISVTLEEQE 506 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 N + VK+ G IP+ +F RF + N G G+GLS+V ++LH G ++ Sbjct: 507 NMA-VLKVKDTGVGIPQKELPHMFERFHRIENTAGRTHEGTGIGLSLVHELVHLHAGTIT 565 Query: 774 ISSSDEGVTTINCRIP 789 + S + +T IP Sbjct: 566 VESIEGTGSTFTVCIP 581 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 19/235 (8%) Query: 564 KADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ------YVEYISAS 616 K DEI KN F+ VS+EL++PLT+++GFT +LG N++++Q E + Sbjct: 1022 KEDEIRKNDFIGMVSHELKTPLTSLVGFT------QLGLRNAQKNQDSLNFSIYEKTNRQ 1075 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + +L+N L+++ +++G + L+ + L++L+ E+ + ++ + Sbjct: 1076 LIKMSSLINGFLNVSQLESGKIHLHLTDFRLDELIREMIADAGLAASGYDFQVDCVEL-- 1133 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 ADR ++ + + +LSNA+ + + + + + +G SV + G I E Sbjct: 1134 --IINADRNKIGTVLTNLLSNAIKYGANSRVISIACSCTDGYARVSVTDQGIGIKEADIS 1191 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+R+ + N G G+GL + I H G + S TT+ +P Sbjct: 1192 KLFDRYYRIENNQTQHISGFGIGLYLSAEIIGRHHGKIWAESEPGKGTTLFVELP 1246 >gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 820 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 13/234 (5%) Query: 555 LTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 L E+ +A RK A+ IK+ F+ +S+ELRSPL I+G++ LL+T K S +++ + Sbjct: 440 LLEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKFDSATTQKG--L 497 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIR 668 I ++ + L++D+LD+A + G +KL +T+ L ++ E + + A + +R Sbjct: 498 STIERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIALR 557 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +I ++ D RL Q+ +LSNA+ F+ +G VI++ + +V + G Sbjct: 558 FNLIDSCQVR---GDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQACITVVDTGK 614 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 I + +F F R G+GLGL+IV+ ++ HGG ++ S+ EG Sbjct: 615 GIKPEFLPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEG 668 >gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 778 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913] Length = 1101 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 15/261 (5%) Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584 I P+ N Q LT +V + + ++A L E A +A+ K+ F+ +S+E+R+P+ Sbjct: 526 ISPVFNEQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIRTPM 585 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 ++G +L+ S SLN KQ V S+ LLN++NDILD + VDAG ++L Sbjct: 586 NGVLGMLNLILDS---SLNEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLELEELE 642 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L ++L++ ++IA H NI + + I + + D RL QI + +++NA+ F+ Sbjct: 643 FNLCNMLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNALKFTH 702 Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 KG VI K N + F V ++G I +F F V ++ + G GLG Sbjct: 703 KGEVQVIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYGGTGLG 762 Query: 758 LSIVESFINLHGGHVSISSSD 778 L+IV+ +L G + + S + Sbjct: 763 LAIVKKLCHLMEGDIQVQSKE 783 >gi|145606116|ref|XP_001406723.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15] gi|145013842|gb|EDJ98483.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15] Length = 1994 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 15/223 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K F+ ++S+E+R+PL I G L+ + +L +Q Y I S+ L+ Sbjct: 1312 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQET---TLTEEQRDYTNTIHTSANSLI 1368 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y L+ V + ++T + + I + ++ ++V Sbjct: 1369 MIINDILDLSKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEVPAWV 1428 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFI---FSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+S+G S +K D I FS+ + G Sbjct: 1429 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCSVATVKENEIGEDEIMLEFSIIDTGRGFT 1488 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +D + +F F + + Q G GLGL I + LHGG + Sbjct: 1489 KDESELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGQM 1531 >gi|16804620|ref|NP_466105.1| hypothetical protein lmo2582 [Listeria monocytogenes EGD-e] gi|16412070|emb|CAD00660.1| lmo2582 [Listeria monocytogenes EGD-e] Length = 459 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D ++ D + L Q++S +L+NA+ F+ +G + ++ D + V+++G I + Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398 Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 DM K +F+RF +N R + G GLGLSI + I LH G V++ SS E TT ++P Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457 >gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] Length = 868 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 131/264 (49%), Gaps = 17/264 (6%) Query: 526 LEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +E+S +PL + Q + ++ +++ + + E+ +A+ K F+ ++S+E+ Sbjct: 160 IEHSSVPLYDDQKNVIGIIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEI 219 Query: 581 RSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 R+P+ I+G +L LKT L+ KQ +Y++ I +SS LL ++NDILD + +DAG + Sbjct: 220 RTPINAIVGMANLCLKTQ----LSEKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLS 275 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698 + L D+L + A K ++ ++ + + + D RL Q+ ++SNA Sbjct: 276 IERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNA 335 Query: 699 MDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F+ G + +L D SV + G + E+ ++F F R+ Sbjct: 336 IKFTEDGEINVAVTLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYG 395 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I I L GG + ++S Sbjct: 396 GTGLGLAISRRLIQLMGGDIGVTS 419 >gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM] gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM] Length = 1083 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 32/256 (12%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFT----------------------DLLKTSKLGSL 602 A+ K F+ +S+ELR+PLT I+G+ DL T + L Sbjct: 817 ANVAKTDFLNVMSHELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTATGAIEHL 876 Query: 603 NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + Q + +Y + S LL L+N++LDLA +DAG +K++ + L ++ V + Sbjct: 877 EAVQREVGKYAGKMEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVRSVLDQFS 936 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 HE ++ + V + G+L F AD RL QI ++ NA+ F+ KG + ++A D Sbjct: 937 NAAHEKSVDL-VGAIGELSVF-ADEMRLRQILINLVGNALKFTDKGQ-IRIEAEVKGADV 993 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V+++G IP +F++F S+A R + G GLGL+I + L GG +S++S Sbjct: 994 AIHVRDSGCGIPAKEQALIFDQFNQIDSSASRA-KGGTGLGLTISRRLVELQGGRISVTS 1052 Query: 777 SDEGVTTINCRIPSKE 792 + + +P +E Sbjct: 1053 EEGKGSVFTFTLPMEE 1068 >gi|311064133|ref|YP_003970858.1| sensory transduction protein kinase [Bifidobacterium bifidum PRL2010] gi|310866452|gb|ADP35821.1| Sensory transduction protein kinase [Bifidobacterium bifidum PRL2010] Length = 368 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R E E L+ AD+++ V +VS+ELR+P++ + + + + +E Sbjct: 115 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 170 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670 I + L +L+ +LDL+ ++AG LN L+D L+E + IA H ++I + Sbjct: 171 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 230 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728 V SD + D+ RL Q+F+ I++NA+ S+ G++V+++A D G + +V N GS Sbjct: 231 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 287 Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP + +F RFV + + G G+GLSI LHGG V + G Sbjct: 288 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 341 >gi|266621452|ref|ZP_06114387.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] gi|288866893|gb|EFC99191.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479] Length = 496 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 139/251 (55%), Gaps = 10/251 (3%) Query: 545 VTDSVRAERALTEKNEALRKADE--IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +T + ER EK E + ++ +K++ ++ +S++LR+PLT I G ++ L GSL Sbjct: 243 ITLVLERERLNEEKEETKIQIEKERLKSTLLRSISHDLRTPLTGIAGSSNFLY-DNYGSL 301 Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + ++ + I + L ++V ++L++ + G + + V++DL++ ++ + Sbjct: 302 DEETAKSMLNDICTDAEWLNSMVENLLNMTRIQEGRLDIQKKKEVVDDLISGAVTLVSKR 361 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720 + ++ R+K ++ + D + Q+ ++ NA+ S +T+ + +AR G+FI Sbjct: 362 LGDH--RLKTVTPHDIVLLPVDARLFTQVLVNLIDNAIRHSGNDTTITV-SARVMGNFIT 418 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSD 778 F V +NGS IPE+ +F+ F + A+ ++RGVGLGL+I ++ + HGGH+ +++ Sbjct: 419 FKVSDNGSGIPEERLDKIFDNFFTTAYENGDKQRGVGLGLTICKAIVEAHGGHIKAVNNE 478 Query: 779 EGVTTINCRIP 789 G TT +P Sbjct: 479 GGGTTFQVDMP 489 >gi|187935686|ref|YP_001886721.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187723839|gb|ACD25060.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 502 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%) Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535 P T++ +A N+ D + +DE +L TL LS + L N Sbjct: 204 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 248 Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A +TD + + L E E RK + ++ FV +VS+EL++P+ I G+ + LK Sbjct: 249 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 300 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + ++ Y+E I + S + LV ++L+L+ +++G +K + +N L++++ Sbjct: 301 DGIVSGDDA--LAYLETIISESQKMNALVKNMLELSKLESGTIKPKLESFNINRLISKIL 358 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ K EN+++I S AD ++ Q+ + I++NA+ ++ + + + + Sbjct: 359 KNNHLKFEENDLKINFNSSNPYSYVYADIFQMDQVITNIITNAIKYTPSHNLIDVSINEE 418 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 N F S+KN G +IPE +F++F + + + + GLGLSIV++ + LH + Sbjct: 419 NDKFKISIKNMGVNIPESEINKIFDKFYRIDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 478 Query: 774 ISSSDEGV 781 + + D GV Sbjct: 479 LKNIDNGV 486 >gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 990 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L Q + T + + +SVR E ++ R+A+E K+ F+ ++S+E+R+P+ +IG +D Sbjct: 305 LARNQLIETNMKLGESVRK---TEEMAKSAREANEAKSRFLANMSHEIRTPMNGVIGMSD 361 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +L + SL+ +Q +YVE I +S LL ++NDILD + ++A ++L++ L DLL Sbjct: 362 ILLDT---SLDIEQRKYVETIISSGKNLLKIINDILDFSKIEANRLELDHIDFNLIDLLE 418 Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 +V + + +E + + + L D RL QI ++SNA+ F+ +G V+L Sbjct: 419 DVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLVSNAIKFTHEGE-VVLD 477 Query: 712 AA--RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 A R+ + + F+V + G I E+ S+F FV R+ G GLGLSI Sbjct: 478 AVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIRKYGGTGLGLSISSHL 537 Query: 765 INLHGGHVSISS 776 G +++ S Sbjct: 538 AEKMGSGITVQS 549 >gi|237800772|ref|ZP_04589233.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023630|gb|EGI03687.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6] Length = 621 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G N + Sbjct: 147 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTTIENRNIRR 202 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 203 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACGLLVMLTTEKNIE 262 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ S ++ NA+ F+ KG + + A + + +F V ++G Sbjct: 263 LNCTSAHGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVAEGNEVLFKVSDDGI 321 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP++ +F R+ S G RG GLGL I + + HGG + SS + + + + Sbjct: 322 GIPKEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSIFSFTL 380 Query: 789 P 789 P Sbjct: 381 P 381 >gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 2654 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 12/245 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601 +++T S A A+ + E A++ K+ F+ ++S+E+R+P+ IIG + L L+T Sbjct: 1815 MDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTD---- 1870 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN +Q Y+ + S+ LL ++NDILD + ++AG + + + L D+L+ + + K Sbjct: 1871 LNGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLK 1930 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 E + + + G + D RL Q+ + +NA+ F++ G V+ L+ + Sbjct: 1931 AEEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKVQQLERTTER 1990 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 FSVK++G + + +F F R+ G GLGL+I + + + G + + Sbjct: 1991 IKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDV 2050 Query: 775 SSSDE 779 S E Sbjct: 2051 DSVPE 2055 >gi|28869841|ref|NP_792460.1| bacteriophytochrome [Pseudomonas syringae pv. tomato str. DC3000] gi|28853086|gb|AAO56155.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 993 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ + N + + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ S ++ NA+ F+ KG + + A D D +F V ++G Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757 Query: 789 P 789 P Sbjct: 758 P 758 >gi|148243694|ref|YP_001219934.1| signal transduction histidine kinase with CheB and CheR activity [Acidiphilium cryptum JF-5] gi|146400257|gb|ABQ28792.1| MCP methyltransferase, CheR-type [Acidiphilium cryptum JF-5] Length = 1445 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 8/240 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF +VT+ A AL + +A K+ F+ VS++LR PL I +LL + Sbjct: 838 VVTFADVTEQKLAASALEAARQQAEQATLAKSRFLAAVSHDLRQPLQTIALLQELLTETT 897 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G ++ I +++++ ++N +LD+ ++AG +K+ ST ++++L ++ Sbjct: 898 SGK---AALGLIQQIKQTTSVMAGMLNTLLDINQIEAGTVKVTVSTFAVDEILRDLHDEF 954 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E N++++V+ + +DR L Q+ +LSNA+ ++ G ++L R +G Sbjct: 955 HFQAEERNVQLRVVDSTVV--IASDRALLKQMLRNLLSNAIKYTQSGR-ILLGCRRRHGG 1011 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IPE ++F+ + N R + RG+GLGL+IV L G + + S Sbjct: 1012 LSIEVWDTGVGIPEPEWTAIFDEHYQIDNPARERGRGLGLGLAIVRRVGELLGHPIELRS 1071 >gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] Length = 802 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 886 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 11/250 (4%) Query: 536 AQTMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 Q +F + V+ A LT EA A++ K+ F+ ++S+ELR+PL I+G+ +L Sbjct: 392 GQLRTSFTELETRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQIL 451 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 +K +L K+ V I + LL L+ND+LDL+ ++A ++L I L L V Sbjct: 452 GRAK--TLPEKERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGV 509 Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712 + + + I D L + + D +RL Q+ +L NA+ F+ KGS T+ ++ Sbjct: 510 VEICRVRSDQKGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDKGSITLKVEV 569 Query: 713 ARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFIN 766 N F V + G I D +F F R Q G GLGL+I + + Sbjct: 570 IASNATMPLPQLKFQVLDTGVGIASDQVNKLFQEFEQVGDRKRQAEGTGLGLAISQKIVE 629 Query: 767 LHGGHVSISS 776 L GG + + S Sbjct: 630 LMGGKIEVES 639 >gi|256844017|ref|ZP_05549504.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN] gi|293380701|ref|ZP_06626750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] gi|295693700|ref|YP_003602310.1| sensor protein [Lactobacillus crispatus ST1] gi|256613922|gb|EEU19124.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN] gi|290922741|gb|EFD99694.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Lactobacillus crispatus 214-1] gi|295031806|emb|CBL51285.1| Sensor protein [Lactobacillus crispatus ST1] Length = 384 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++ K+ + +VS+++R+PLT+IIG+ LLK + K+ + Y A + Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKAGVTSPEDQKKYVNIAYTKAEQ--MKA 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L ND+ + T+ + KLN + + + +L +V + +N I I++ + K + A Sbjct: 206 LANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAGFELEAEKNGIEIEIEARPKNLTIKA 265 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 D ++L+++++ ++SNA + + + + L A N + V+NNG+ IP+ +F R Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGAPIPKKSLNKIFER 325 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGLSI + ++LH G + S+E T+ R+P Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESNEKWTSFIIRLP 374 >gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 788 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 127/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + +L ++Q +Y Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---NLTAEQEKY 330 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 390 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 441 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500 Query: 776 S 776 S Sbjct: 501 S 501 >gi|222149462|ref|YP_002550419.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221736445|gb|ACM37408.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 1282 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 116/537 (21%), Positives = 231/537 (43%), Gaps = 72/537 (13%) Query: 311 ILHNLTVAIAIFDQNRYLQFHN---RSFVELWEIDLAFLATN--------PSNDELLEFL 359 IL + V + I D ++ L F N R+ V W D A T+ +N LE Sbjct: 434 ILRTMPVGVIILDADQSLSFSNLMARNMV-CWPEDQAMTGTSFADYLRHAHANGWPLETG 492 Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMFE 417 A+ P+ ++ ++ + +S+ + T + H+++T++P G + F Sbjct: 493 DDASLNPDSIDPES-RIAAYSLELRTLTAARQTEVTLSDRRHIVITASPLDDGQIMLTFS 551 Query: 418 NLTVQV-------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 + T Q + + + K+ E H+++G+ V D RI N + Sbjct: 552 DYTEQRLREREIDEARARLQDVGKLLEEATQHMAQGLCVIQTD-RILYRNDKLAEILNVS 610 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-- 528 + + G R + C+ + F T+F D +S + + + + V++ Sbjct: 611 PHLVRTGADWRQLFDYCAERGD-------FGDNPTAFLDRMRS-RMSADTSASVVVQRRD 662 Query: 529 ----SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 SI + +A+ FV + +++ + E LT AD+ K+ F+ ++S+E+R+ Sbjct: 663 GAWRSIEAIVSAEDRWLFVISDASEAKQREAELTTLAAQAEAADKAKSRFLANMSHEIRT 722 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P++ ++G T+LL +S +L+++Q +V+ I S LL ++NDI+D + +D G + L Sbjct: 723 PMSGVLGMTELLLSS---NLDARQKTFVDVIVKSGRSLLTIINDIIDFSKIDDGSLSLRS 779 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701 + + +V +A + E ++ I V G+L +A D R QI + +L A+ Sbjct: 780 APFDPLAAVEDVVTLMAGRAAEKDVDILVRGQGRLTHMLAGDAGRFRQILTNLLGEAIRA 839 Query: 702 SSKGSTVILKAARD-----------NGD----------------FIFSVKNNGSSIPEDM 734 + +G ++ R +GD + +++ G + + Sbjct: 840 TDRGHVLVDLGLRQEEPDLDVTLQSHGDPISETNAEVSDRARAWLVLRIEDTGHGMTPEQ 899 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 C F +F +++ R G GLG SI ++L GG + + S+ T+ +P Sbjct: 900 CLMAFTKFSQMNDGALHHRDGAGLGFSIAGGLVDLFGGTIGVESAPGRGATVTVNLP 956 >gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 998 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-- 610 +AL +A A++ K++F+ ++S+ELR+PL +IG++D+L + ++S Y+ Sbjct: 488 QALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGYSDMLME------DLEESDYLPD 541 Query: 611 -EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+++ LL L+N +LDL+ ++AG M+L +N+L+ V + M +N+ R Sbjct: 542 LQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINELVQGVAALVKPLMDKNHNRF 601 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + LG AD ++ Q +LSNA F+ G+ + D F + + G Sbjct: 602 ALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAGTVTLNVWIDDTQRVFFQISDTGIG 661 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + + +F F + R G GLGL+I F + GG +++ +S+ GV ++ Sbjct: 662 MSPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMMGGDITV-TSEPGVGSV 717 >gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall] Length = 615 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + +L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + + +D G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDCGENVYVHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVHIKSELGQGTEFIIKLPA 585 >gi|149189985|ref|ZP_01868263.1| putative histidine kinase [Vibrio shilonii AK1] gi|148836151|gb|EDL53110.1| putative histidine kinase [Vibrio shilonii AK1] Length = 508 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 115/196 (58%), Gaps = 8/196 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L + E ++A++ K++F+ ++S+E+R+PL I+G T++L SKL ++ Q Y+ Sbjct: 301 EKQLIDAREHEKQANQAKSTFLANMSHEIRTPLNGILGMTEILGDSKLSAI---QKDYLT 357 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ASS LL L+NDILDL+ +++G +++ T + + + + IA K + I I + Sbjct: 358 TINASSQTLLMLINDILDLSKIESGHLEICPHTTAIKETIFDTAALIAPKAQQKQIDILI 417 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNN 726 D ++ +V AD Q++ Q + SNA+ F+ GS ++ L+A ++ I FS+++ Sbjct: 418 DIDPEIPDYVKADEQKVRQTLMNLASNAIKFTETGSIAFSLKLRAQTEDSVTIGFSIQDT 477 Query: 727 GSSIPEDMCKSVFNRF 742 G I E K +F F Sbjct: 478 GIGIDEKKQKHIFEEF 493 >gi|30021337|ref|NP_832968.1| two component system histidine kinase [Bacillus cereus ATCC 14579] gi|29896891|gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 458 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457 >gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 1019 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 30/270 (11%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTN 586 I L N Q L VN T ++ + E A+ +A + K+ FV ++S+E+R+P+ Sbjct: 473 ISSLKNIQAELEGVNTTLELKVSQRTRELERAIDEALAASQAKSDFVANISHEIRTPMNG 532 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-NYS-- 643 ++G ++LK L+ +Q Y++ ++S+ L+NL+NDILD + ++AG + + N+S Sbjct: 533 VLGMLEMLKED---GLSEQQHHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHSFD 589 Query: 644 -TIVLNDLLNEV-----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 V +D++N + ++ + +H +NI +++ V D RL QI +++N Sbjct: 590 VVTVCSDMINSLALQGQRKGLEVFLHTHNIVDRMV--------VGDSHRLKQILINLVNN 641 Query: 698 AMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 A F+ KG + ++ D F+VK+ G I + +F F R Sbjct: 642 AFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGIAAENIDKLFEVFTQEDSSTTRHF 701 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGV 781 G GLGLSI + L GG++S+ +S++GV Sbjct: 702 GGTGLGLSICKKLAQLMGGNISL-TSEKGV 730 >gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing protein [Aromatoleum aromaticum EbN1] gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and histidine kinase domain of putative two-component sensor [Aromatoleum aromaticum EbN1] Length = 918 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 5/245 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +S AE L NE L++ D +K+ F+ VS+ELR+PLT+I F+++L +L + Sbjct: 664 ESATAE--LRAANERLKELDRLKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIALPDRM 721 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +++ I + + L LVN +LDLA +++G + + S I + L+ + + A + Sbjct: 722 -RFLGIIVSETERLTRLVNQVLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRG 780 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKN 725 ++++ + AD RL+Q+ +LSNA F +G+ I A + + G V + Sbjct: 781 ATVELVLPDEAPHLKADHDRLVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQVRVEVSD 840 Query: 726 NGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 NG IP ++ +F +F R + +G GLGL I + GG + + S T Sbjct: 841 NGPGIPPELHGVIFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWVESPPGHGTVF 900 Query: 785 NCRIP 789 +P Sbjct: 901 TFVLP 905 >gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1442 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L + E A+ K+ F+ ++S+E+R+P+ I+GF +LL ++ L+++Q YV+ Sbjct: 802 EQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETE---LSTEQQDYVQ 858 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670 +S ILL L+NDILD + ++AG + + + ++ + A K E + + Sbjct: 859 EAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMHT 918 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726 +I V D RL QI + +LSNA+ F+ G ++ + + D + F V ++ Sbjct: 919 LIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETINESSDKAEIAFEVSDS 978 Query: 727 GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I PEDM K +F F R+ G GLGL+I + L G + + S Sbjct: 979 GIGIAPEDMEK-LFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKS 1030 >gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 818 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 133/266 (50%), Gaps = 18/266 (6%) Query: 532 PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 PL + Q LT +++T R E L E + ++ K F+ ++S+E+R+P+ Sbjct: 278 PLYDDQKKLTGSIGIHLDITGQKRLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINA 337 Query: 587 IIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 I+G + LL KT++ NS+Q Y E I S+ L+ ++NDILDL ++AG +++ Sbjct: 338 ILGLSRLLTKTTQ----NSQQRTYTEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEF 393 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704 L DL+ +++ + K E + + + + D R+ Q+ ++ NA+ F+ K Sbjct: 394 NLADLIKQLEGVLRYKTEEKGLEFDATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEK 453 Query: 705 GSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G + + +D + F+VK+ G + + K +F F R+ G GLGL Sbjct: 454 GGIEVWCKLVDQQKDVNEIQFTVKDTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGL 513 Query: 759 SIVESFINLHGGHVSISSSDEGVTTI 784 SI + L GG + + S+ +G+ T+ Sbjct: 514 SISRQLVELMGGKIHVEST-KGLGTV 538 >gi|315500524|ref|YP_004089326.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315418536|gb|ADU15175.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 644 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 7/242 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ R+E AL E A+ K+ F+ S+ELR+P++ I+GF LL+ + +L+ Sbjct: 388 DMTERRRSEEALRMAREDAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-ETLS 446 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + V+ I + LL+L+ND+LD+++++AG ++ + L+D++ EV A + Sbjct: 447 TPHRAAVQQIMKAGRHLLSLINDLLDISSIEAGATDMSIEAVDLDDVVQEVHALAAPIVA 506 Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + ++ D +A DR+RL+Q+ +++NA ++ G+ V L R D Sbjct: 507 TGGLSFQL--DAAEPGLIAQADRRRLIQVLLNLIANAAKYNRTGTCVRLAYGRKGDDIRI 564 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V+++G I +F F + + R G GLGL++ + + G + + + Sbjct: 565 EVEDDGEGIDPSAASRLFTPFDRLGQQSKTRVEGTGLGLALSKRLVESMSGEIGYEAPAQ 624 Query: 780 GV 781 G Sbjct: 625 GA 626 >gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] Length = 924 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 754 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VTD ERAL + + A+ K+ F+ S+E+R+PL I+G LL + L Sbjct: 209 DVTDRTETERALADARDQANAANRAKSRFLAMASHEIRTPLNGILGMGGLLLETPL---T 265 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q+ Y + + AS L++L+N++LD + ++AG + L L L+ E+ + +A + Sbjct: 266 PEQTTYAKAVRASGEALMSLINELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQ 325 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721 + I D +L ++V D RL Q+ + NA+ F++KG VI + + F Sbjct: 326 AKQLEIAAYMDERLPTWVTGDAARLRQVLLNLAGNAIKFTAKGGVAVIAEPGIWPNEISF 385 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V++ G I + + +F F R G GLGL+I + + GG +S+ S Sbjct: 386 QVRDTGIGIAAEAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRISLQSEPG 445 Query: 780 GVTTINCRIP 789 T +P Sbjct: 446 AGATFEVCVP 455 >gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 127/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + +L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---NLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Anabaena variabilis ATCC 29413] Length = 1399 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 5/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA A+ K+ F+ +S+ELR+PL I+G+ LL T +L + +Q +E I S+ Sbjct: 1006 EAAETANRAKDEFLSILSHELRNPLNTILGWASLLSTHQLEA--DTVNQGLEAIERSAQA 1063 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 +L++D+LD++ + +G ++++ I L ++ + NI I+ D + Sbjct: 1064 QAHLISDLLDVSRISSGRLRMDAQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKT 1123 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 V D RL Q+ +LSNA+ F+ + + + + + G I D +F Sbjct: 1124 IVGDPIRLQQVIWNLLSNAIKFTPVRGRIDITLEYTDFHAQIQISDTGQGISPDFLPFIF 1183 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 RF + G+GLGLSIV + LHGG V+ S EG+ T R+P Sbjct: 1184 ERFRQADGSRTRSNTGLGLGLSIVRHLVELHGGTVAAQSPGEGLGATFTIRLP 1236 >gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 623 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 9/242 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + +++++K++F+ ++S+E+R+PL I+GF++LL S + + +Y + Sbjct: 390 EEELREAKKRAEESNKLKSAFLANMSHEIRTPLNAIVGFSELLADE---SRHETRREYTD 446 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++T+LL +++D+LDLA +++G + + DL EV S+ + + ++V Sbjct: 447 IILRNNTLLLQIISDVLDLARIESGRTDIERTQFDARDLCREVADSLRLQ-RRPGVELRV 505 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730 R+ L Q+ + NA+ F+ KGS V + R G F V++ G I Sbjct: 506 EEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEKGS-VTIGFRRIPGHIRFYVRDTGIGIA 564 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 PED + +F RFV Q G GLGLSI +S GG V + S + IP+ Sbjct: 565 PEDR-ERIFERFVKLDTFTQ--GTGLGLSICKSIAEQLGGSVGVDSVAGEGSCFRIDIPA 621 Query: 791 KE 792 E Sbjct: 622 GE 623 >gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 1763 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1296 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLSPKQVEFA 1355 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1356 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1415 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ GS VI + D Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1475 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +G I FSV + G I + +F F R+ G GLGLSI Sbjct: 1476 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1536 LLGGEIHAASEPGRGSTFTLYLP 1558 >gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916] Length = 464 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|197122092|ref|YP_002134043.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196171941|gb|ACG72914.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 844 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + +ALR AD K F+ +S+ELR+PL I LL + G +++++ V I + Sbjct: 459 REQALRDADRRKTDFLAVLSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAV--IERQA 516 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L LV+D+LDL+ V+ G + L + + +++ + E + + D + Sbjct: 517 DHLAKLVDDLLDLSRVNFGKIALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQP 576 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 AD RL QI +L+NA F+ G V + + G + V++ G I + ++ Sbjct: 577 VWVDADPTRLAQIAGNLLTNAAKFTPPGGRVAVTVRAEGGSCVLRVRDTGVGIDPGLLEA 636 Query: 738 VFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +F F + A R + R G+G+GLS+V S + +HGG V S G Sbjct: 637 IFEPF-AQAERTRWTARGGMGIGLSLVRSLVGMHGGTVVARSEGAG 681 >gi|16125314|ref|NP_419878.1| sensor histidine kinase [Caulobacter crescentus CB15] gi|221234052|ref|YP_002516488.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|13422360|gb|AAK23046.1| sensor histidine kinase [Caulobacter crescentus CB15] gi|220963224|gb|ACL94580.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 263 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 3/215 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 +E K SF++ VS+ELR+PL +IGF+++L G L S Q +Y + S LL LV Sbjct: 35 EERKRSFLRMVSHELRTPLNAVIGFSEILSQELYGPLGSPQYREYATIVHDSGLKLLKLV 94 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 N I++LA ++ + + L++ + +V S+ ++ ++ + V+ G L S AD Sbjct: 95 NQIVELARLEGQASDIEMTPESLDEAIEDVVDSLRAEIARRDVIVHVVGAGALPSVQADS 154 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + L + + +L NA+ S G + + AAR +G+ ++++ G + + F Sbjct: 155 RGLRTMLTNLLQNAVTHSPAGGVIHVTAARVDGEIEIAIRDQGPGVESAELPRLLQPFEQ 214 Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 R G GLGL IV+ GG + +SSS Sbjct: 215 GGCALTRTHEGAGLGLPIVDLLSRAMGGQLKLSSS 249 >gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 585 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 L+K ++++ F+ +VS+EL++P+T+I GF++ L G++ +++ ++ I S Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMKNQKFCEHFLHIILKESER 410 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L+ D+LDL+ ++ KLN + + DLL ++K + K + I +++ + + S Sbjct: 411 MQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHV-S 469 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL QIF ++ NA+ ++ G TV + D + V + G I ++ +F Sbjct: 470 VIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSLFEDEQNAYVQVADTGIGISKEEIPRIF 529 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + H G +++ S T +P Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALP 581 >gi|302133086|ref|ZP_07259076.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 998 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ + N + + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ S ++ NA+ F+ KG + + A D D +F V ++G Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757 Query: 789 P 789 P Sbjct: 758 P 758 >gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 1897 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RA+ EK L K+ F+ ++S+ELR+PL +I+ L + +L+ +Q ++ Sbjct: 1211 QARRAVEEKAAELALTSRYKSEFLANMSHELRTPLNSILILGQQLSDNPDRNLSERQVEF 1270 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + T LLNL++DILDL+ +++G + +N + N +L + + + ++ Sbjct: 1271 ARTIHGAGTDLLNLISDILDLSKIESGTVSVNAEDVSFNAVLEAIARPFRHEAERRDLAF 1330 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD------- 718 ++ D LG + D +RL Q+ +LSNA F+ +G +V A + D Sbjct: 1331 EMSFDADLGRTLFTDSKRLQQVLKNLLSNAFKFTREGYVRLSVKPAATKWGPDHPTLAEA 1390 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V ++G IP D K +F F R+ G GLGL+I +L GG + Sbjct: 1391 QTVVAFEVDDSGIGIPLDKQKIIFEAFQQADASTSRKYGGTGLGLAISRELAHLLGGEIQ 1450 Query: 774 ISSSDEGVTTINCRIP 789 + S +T IP Sbjct: 1451 LRSEPGRGSTFTLYIP 1466 >gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1276 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 16/217 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ ++G T+LL+ ++L SKQ ++V+ + S LL +++DIL Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682 D + ++AG + L L+ LL++V + E N R K + +D Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNARRKELELVYQRADSVPQRMRG 674 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QI + +L NA+ F+ G + A D+G +F + ++G I D+ +F F Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVGLSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 734 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R+ G GLGL I + GG +++ S+ Sbjct: 735 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDST 771 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 129/243 (53%), Gaps = 5/243 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +A +A+ +K+ F+ ++S+ELR+P+ IIG+++LLK + ++ I Sbjct: 156 ALQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEAEDLQITGLVDDIDNI 215 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL+++ND+LD + ++ G M L+ + L+N++K + + +++ Sbjct: 216 EKAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDC 275 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI-FSVKNNGSSI 730 +G+ AD ++ +I +LSNA F+ G+ ++ K + +N +I F V + G I Sbjct: 276 ADNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGI 335 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++ + +F+ F R+ G+G+GL++ + F+++ G + + S +T R+ Sbjct: 336 TDEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRL 395 Query: 789 PSK 791 P K Sbjct: 396 PIK 398 >gi|56965767|ref|YP_177501.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56912013|dbj|BAD66540.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 472 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 10/238 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 + E ++L + D +N+F+ +V++ELR+PL+ +IG+ + ++ + ++++ + I Sbjct: 228 SFNELAKSLEQVDRERNAFLANVAHELRTPLSYMIGYAEGIQEGVI-----ERNKGMAVI 282 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L LVND+LDLA ++ +L+ + +L E + A + + +I++++ Sbjct: 283 EKEAKRLDRLVNDLLDLAQLEGSDYRLDKEALPFAELAREAVAAFAWQAEQKHIQLELEL 342 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D S + AD R+ Q+ + +L+NA+ +S +TV ++ NG V++ G+ IPE Sbjct: 343 DED--SIIDADWDRMQQVLTNLLANAIAYSPPFTTVTVRITSSNGWAEMVVEDEGAGIPE 400 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 SV RF V Q G GLGL+IV+ + HGG + S + T RI Sbjct: 401 ADLSSVQKRFYRVKKGRSRQNGGTGLGLAIVQEIVAKHGGDFQLVSQEGKGTKAIIRI 458 >gi|323138654|ref|ZP_08073721.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322396142|gb|EFX98676.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 780 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 9/237 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617 EALR+AD+ K+ F+ +++ELR+PL + +L+ G L+ +Q + + Sbjct: 406 EEALREADQRKDEFLATLAHELRNPLAPLRNAIRVLRRDA-GRLSEEQRGELFAMFDRQT 464 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+ LV+D+L+++ + G + L + L +L ++ + +++ + + Sbjct: 465 EHLVRLVDDLLEVSRITRGKIDLRKERVDLATILRNAIETSRPAIERGGHELRIDAGAER 524 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 AD RL Q+FS +L+NA ++ G ++ L R + + SV+++G IP +M Sbjct: 525 LILDADPVRLAQVFSNLLNNAAKYTEHGGSIALTVERRGDEAVVSVRDSGVGIPPEMAPR 584 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTINCRIP 789 VF+ F V + G+G+GL++V + + +HGG S+ + EG+ TT R+P Sbjct: 585 VFDIFTQVDRTLGRSQGGLGIGLALVRNLLEMHGG--SVEAHSEGLGRGTTFVVRLP 639 >gi|229097706|ref|ZP_04228661.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29] gi|228685651|gb|EEL39574.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29] Length = 448 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G TV I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEGMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447 >gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|325684431|gb|EGD26597.1| sensor histidine kinase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 521 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L NE ++ +E ++ F+Q V++E+R+PLT I G + +K + + +S ++ Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + L+ LVN+ LD + +G +++ S ++N+V+Q + +N +I + Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGDKIILD 382 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + AD+ R Q+ + NA+ F++ G T+ L+ R FSV++ G + + Sbjct: 383 APEDLPIY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440 Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + K +F RF + A G GLGLSIV S + HGG + IS EG T Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495 >gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1136 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 163/389 (41%), Gaps = 62/389 (15%) Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL----------------- 466 D E KY TL+ + +G V G D RI SNPAFR + Sbjct: 483 DSEAKYRTLLA-------SMRDGFVVIGKDNRIMESNPAFREMLGYSREELNGLTTLDIT 535 Query: 467 ---WKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522 W+ EE L + + + Y DG AA+ LQ Sbjct: 536 PERWQAPEEAVLRTAVDTQGFSGIFEKEYRRKDGSVFPAAL---------RLQRYPSRGD 586 Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 D+ ++I+ +VT+ E L EA A+ K+ F+ +S+++R+ Sbjct: 587 DARRYFAIV-----------RDVTEDKAIEADLRAAKEAAETANRAKSDFLAKMSHDIRT 635 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL +IG T+L + L+ +Q +E S+ LL L+NDILD++ ++A ++L Sbjct: 636 PLNAVIGMTELTLDT---PLSHQQRDALETARESAASLLALINDILDISRIEARKLELAS 692 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 L L + +S+ + + +R+ + + FV D RL QI ++ N + F Sbjct: 693 DVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVRLRQILLNLVGNGIKF 752 Query: 702 SSKGSTVIL------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + +GS ++ +A D I F+V + G I + + +F+ F R+ Sbjct: 753 TDQGSVSLIVGPDTGQAKPDGATAIAFTVSDTGIGIESERLEGIFDMFAQADASITRQYG 812 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGV 781 G GLGL+I L GG + ++ S G Sbjct: 813 GTGLGLAICRELARLMGGCI-VAESRPGA 840 >gi|229110656|ref|ZP_04240220.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15] gi|228672724|gb|EEL28004.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15] Length = 448 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447 >gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 640 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 7/230 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 A ++ + S+E+R+PL IIG + LL + SL ++Q+ Y + S LL L Sbjct: 122 PASRARSRLLAMASHEIRTPLNGIIGMSQLLLDT---SLTAEQTTYARAVKTSGEALLAL 178 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682 +++LD A V+AG ++L+ VL +L+ +V + +A + + I D +L S + Sbjct: 179 TDELLDNARVEAGKIELDRCPFVLGNLIEDVVELLAPRAQARGLEIAADIDERLPASLIG 238 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ + NA+ F+ G + D +F V++ G I D +F Sbjct: 239 DAARLRQVLLNLCGNAIKFTEAGGVTLTAEPGDQAAEFRLIVRDTGIGIAPDAQARIFRE 298 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F R G GLGLSI + + GG +++ S+ TT +P Sbjct: 299 FEQADADIARHFGGTGLGLSISDRIVAAMGGRIALDSTPGQGTTFTVTLP 348 >gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1467 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 934 QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 992 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 RF NA +G G+GL++ + I+LH G + + S EG Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1152 >gi|255036012|ref|YP_003086633.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948768|gb|ACT93468.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1084 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 149/306 (48%), Gaps = 35/306 (11%) Query: 480 IRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538 I+ A R++ SDG + + ITS DE +L G L+++ D Sbjct: 661 IQEGRAENERWHLRSDGSRFYGSGITSPLLDEAGNLIGLLKVMRD--------------- 705 Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 LT TD EAL+ AD+ K+ F+ +++ELR+PL + LLK ++ Sbjct: 706 -LTMQKQTD------------EALKIADKRKDEFLAMLAHELRNPLATVRNGISLLKVTR 752 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +++ S V+ + +T L+ +++D+LD++ V G ++L + + L+N +SI Sbjct: 753 QN--DAQMSDVVDMMDRQATHLVRMIDDLLDVSRVTQGKIQLQLERLDMAALINSAVKSI 810 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 ++ +E ++ + G V D RL Q+ + +L+N++ ++ V + +G Sbjct: 811 RSQ-YEARRKVLDVQTGFAKLIVEGDATRLSQVVTNLLTNSLRYTGDEGHVWVTLTSQDG 869 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + + V++NG + + SVF FV N+ + G+G+GL+IV + +HGG V Sbjct: 870 EAVIRVRDNGIGLTPEQQTSVFELFVQGDNSLARTQGGLGIGLTIVRQLVGMHGGRVEAK 929 Query: 776 SSDEGV 781 S G+ Sbjct: 930 SPGIGM 935 >gi|47096765|ref|ZP_00234348.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|224503625|ref|ZP_03671932.1| hypothetical protein LmonFR_14163 [Listeria monocytogenes FSL R2-561] gi|254900964|ref|ZP_05260888.1| hypothetical protein LmonJ_14156 [Listeria monocytogenes J0161] gi|254913822|ref|ZP_05263834.1| sensor histidine kinase [Listeria monocytogenes J2818] gi|254938211|ref|ZP_05269908.1| sensor histidine kinase [Listeria monocytogenes F6900] gi|47014851|gb|EAL05801.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854] gi|258610823|gb|EEW23431.1| sensor histidine kinase [Listeria monocytogenes F6900] gi|293591839|gb|EFG00174.1| sensor histidine kinase [Listeria monocytogenes J2818] Length = 459 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D ++ D + L Q++S +L+NA+ F+ +G + ++ D + V+++G I + Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398 Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 DM K +F+RF +N R + G GLGLSI + I LH G V++ SS E TT ++P Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457 >gi|229128512|ref|ZP_04257490.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4] gi|228654705|gb|EEL10565.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4] Length = 448 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447 >gi|75762154|ref|ZP_00742053.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898302|ref|YP_002446713.1| sensor histidine kinase [Bacillus cereus G9842] gi|74490357|gb|EAO53674.1| Two component system histidine kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542070|gb|ACK94464.1| sensor histidine kinase [Bacillus cereus G9842] Length = 458 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 457 >gi|302060794|ref|ZP_07252335.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato K40] Length = 1003 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ + N + + Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 584 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 644 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ S ++ NA+ F+ KG + + A D D +F V ++G Sbjct: 645 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 703 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 704 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762 Query: 789 P 789 P Sbjct: 763 P 763 >gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] Length = 1135 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 7/211 (3%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G LN +Q YV+ I SS LL LVND Sbjct: 305 QAKSAFLANISHELRTPLNSIDGFINLL--ARHGELNPEQDLYVQTIRKSSAHLLALVND 362 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ + V D Sbjct: 363 VLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRVNGDAL 422 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+ + I+ NA+ F+ G V+ + D D + SV+++G I K +F F Sbjct: 423 RLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 482 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 R+ G GLGL I + L GG + Sbjct: 483 QGDPSITRQYGGTGLGLVISKQLTRLMGGDI 513 >gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 913 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 128/246 (52%), Gaps = 6/246 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N T + + L E E +D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 528 NNTKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSC---DDP 584 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ L+ + NE+ + K+ Sbjct: 585 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 644 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + +++ + G DR RL Q++ L+NA+ + G + + + + G F V Sbjct: 645 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYV 703 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +++G IP ++ VF RF Q G GLGL+I + I G V SS +T Sbjct: 704 EDSGVGIPLEVQDRVFGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGST 761 Query: 784 INCRIP 789 IP Sbjct: 762 FWAWIP 767 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + + + L EA A+ K+ FV +S+ELR+PL +I+G+ +L Sbjct: 656 QTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHV 715 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ + + I S LL+L++ +LD+A ++AG M+L + L L ++ Sbjct: 716 D--ATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVG 773 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714 A + + + + G+L V AD++RL QI +L NA+ F+ G T+ L+ AR Sbjct: 774 MFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAR 833 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + F V + G I +D + +F F ++ R G GLGL+I +++ GG + Sbjct: 834 EIA--YFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGEL 891 Query: 773 SISS 776 S+ S Sbjct: 892 SVQS 895 >gi|213969967|ref|ZP_03398100.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1] gi|301382239|ref|ZP_07230657.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato Max13] gi|213925292|gb|EEB58854.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1] Length = 998 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ + N + + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + S L AD +R+ Q+ S ++ NA+ F+ KG + + A D D +F V ++G Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 IP +F R+ S G RG GLGL I + I HGG + SS + + + + Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757 Query: 789 P 789 P Sbjct: 758 P 758 >gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 705 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 16/217 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ ++G T+LL+ ++L SKQ ++V+ + S LL +++DIL Sbjct: 27 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 83 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682 D + ++AG + L L+ LL++V + E N + K + +D Sbjct: 84 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNAQRKELELVYQRADSVPQRMRG 138 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QI + +L NA+ F+ G + A D+G +F + ++G I D+ +F F Sbjct: 139 DPVRLRQILTNLLGNAIKFTEHGHVALSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 198 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R+ G GLGL I + GG +++ S+ Sbjct: 199 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDST 235 >gi|254295443|ref|YP_003061466.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254043974|gb|ACT60769.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 505 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F VS+E+R+PL I+G LLK ++L + Q +YVE I S + LL+L+N++LD + Sbjct: 27 FTASVSHEIRTPLNGILGMVSLLKETELSLV---QKEYVEAIGKSGSRLLDLLNNVLDYS 83 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQI 690 ++AG + L+ + ++L+ +V + +A + H N+ I S G SF+ D R+ QI Sbjct: 84 RLEAGDIPLDIAAFDPSELIQDVVELLAPRAHAANLDIAAAPSPGMPASFLGDAGRIRQI 143 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748 + NA+ F+ G ++ +G+ +F+V++ G+ IP+ + +F+ + VS + Sbjct: 144 LFNLAGNAIKFTQAGGILVTARLATSGELVFAVRDTGAGIPKKDQEKIFSAYGQVSASDA 203 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776 G+ GVGLGL+I + G + ISS Sbjct: 204 GKDSGVGLGLAIAQRLALAMKGRLHISS 231 >gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1322 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 16/234 (6%) Query: 555 LTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +TE +A KA+E K+ F+ ++S+E+R+PL ++GF +LLK + L+S+Q++Y+ Sbjct: 697 ITELKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHT---PLDSEQAEYLS 753 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN-DLLNEVKQSIATKMHENNIRIK 670 I S+ LL ++NDILDL+ +++G+M + S + L +L+ VK A K +R+ Sbjct: 754 TIKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYA-KASAKGVRLY 812 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVK 724 D ++ S + D R+ Q+ S +L+NA+ F+ G + + N + +V+ Sbjct: 813 SYIDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVE 872 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IP+ KSVF F R+ G GLGL+I + + L + + S Sbjct: 873 DTGVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKS 926 >gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 756 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 9/240 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + ER L E A + IK F+ +S+E R+P+ +IG T +L+ + L+ Sbjct: 354 DVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMTQMLQAT---DLS 410 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y + I +SS LL+L+ND+LDL+ ++A + L L+ + + + ++++ Sbjct: 411 EDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHACVRDTARLLSSQAE 470 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 E + + V D + +V D +RL QI ++ NA+ F++ GS I +A +GD I Sbjct: 471 EKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTIRLSAALSGDEIAL 530 Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +V++ G IP D +F RF NA + G GLGLSI GG + ++S+ Sbjct: 531 SIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIHVTST 590 >gi|228959448|ref|ZP_04121137.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800224|gb|EEM47152.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 448 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVQVELP 447 >gi|229116715|ref|ZP_04246099.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3] gi|228666547|gb|EEL22005.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3] Length = 448 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G TV I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEGMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447 >gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 569 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D+++ FV ++S+ELR+PL + G+++ + + + ++ I S L L Sbjct: 338 RLDKMRTDFVANISHELRTPLVTLQGYSEAI-IDGITESDEATKEFASIIYDESLRLARL 396 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 VND+LDLA +++G +++++ + D L V + E IR++ + +L AD Sbjct: 397 VNDLLDLARIESGKETMHFTSFDIGDFLPRVMRKFNQMASEKEIRLQTDAPHRL--IEAD 454 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+F+ ++ NA+ + G + ++A + + + G IP++ VF RF Sbjct: 455 GDRLEQVFTNLIGNAIAHTDSGE-IRIEATEETDGLRIQLTDTGHGIPKEDLPFVFERFY 513 Query: 744 -SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ R G + G G+GL+IV++ ++ H G VS+SS+ TT +P Sbjct: 514 KADKARTSGSKTGTGIGLAIVKNVVDAHHGKVSVSSTLGVGTTFEIYLP 562 >gi|186462503|gb|ACC78614.1| ethylene receptor [Nicotiana tabacum] Length = 738 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+ E+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV + Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHVLFREVLNLVK 429 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713 + + + L F + D +RL QI ++ NA+ FS +GS I A Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRLTQILLNVVGNAVKFSKEGSVSISAVAAKSES 489 Query: 714 -------------RDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 +N ++ VK+ GS I P+D+ K +F +F N + G GL Sbjct: 490 LSDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDIPK-LFCKFAQNQALATKSSGGTGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 549 GLAISKRFVNLMEGHIWIESEGLG 572 >gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] Length = 324 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 32/332 (9%) Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525 +W L P + + A T S+ W + + DE +L T ++ + Sbjct: 4 IWLVASQLLKPIIKLTHAAKTLSK-----GEWQQHVTV--KYQDEVGTLANTFNQMAKQI 56 Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 + +SI+ N +S +A E N+A K+ FV ++++ELR+PL Sbjct: 57 RISFSILETKNE----------ESQKARVQAEEANKA-------KSIFVANMTHELRTPL 99 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 IIG++++L+ + +E I+++ LL L+ND+LD + V+AG M L Sbjct: 100 NAIIGYSEMLQEEAEDTGQKDLVPDLEKIASAGKHLLALINDVLDFSKVEAGKMGLYLEE 159 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 +N +L +V +I + +NN + V LG +D ++ Q +LSNA F+ Sbjct: 160 FEINTMLQDVIGTIKQVIEKNNNHLIVNYPKNLGIMQSDVTKVRQCLFNLLSNANKFTET 219 Query: 705 GSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G T+ L+A R D+I V + G + D + VF F R+ G GLGL Sbjct: 220 G-TITLQANRYSQKGEDWISLKVSDTGIGMTADQIEKVFLAFTQADASTTRKYGGTGLGL 278 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 I + F + GG V++ S +T + +P+ Sbjct: 279 VITKQFCQMMGGEVNVESQFGKGSTFSINLPA 310 >gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] Length = 796 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + E A+ K+ F+ ++S+E+R+P+ IIG + LL + +Q +YV Sbjct: 227 QELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVNM 283 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++ SS LL+L+NDILD + ++AG ++L + + + +V+ + K + +R ++ Sbjct: 284 LNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLE 343 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR-----DNGDFIFSVKN 725 D K+ + V D +L Q+ + ++ NA+ F+ +G T+ L+ + F V + Sbjct: 344 IDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTERGHVTLSLRLEKVIEPEQKLRVRFEVAD 403 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 +G I ED KSVF++F R G GLGL+I + + L G + ++S Sbjct: 404 SGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456 >gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1208 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++TD R E+ L + A + K+ F+ ++S+E+R+P+ IIG T+L ++ L Sbjct: 532 IDITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALDTR---L 588 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND--LLNEVKQSIAT 660 + Q Y+ + +S+ LL +VNDILD + ++AG KL I N + E +SI+T Sbjct: 589 DPTQRDYLNIVLSSAESLLVIVNDILDFSKIEAG--KLAIEEIDFNPAVAVTEALKSIST 646 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716 + +R L + VA D R+ Q+ + + NA+ F+ G + A + Sbjct: 647 RAERKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAG 706 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 GD + F V + G I + +F F RR G GLGL+I + L GG Sbjct: 707 GDALIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGR 766 Query: 772 VSISSS 777 + + S+ Sbjct: 767 IWVDST 772 >gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] Length = 692 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 7/240 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T K EA KA++ K+ F+ +S+E+R+PL +I+G D+ +S L + +Q ++ + + Sbjct: 316 TAKTEA-EKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHSSLL---SEEQLDWLNQMES 371 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 SS +LL +++D+LD++ ++AG LN I L LN + T+ + I + V + Sbjct: 372 SSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQ 431 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +V AD RL Q+ ++ NA+ F++ G + N SV + G I Sbjct: 432 NVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTT 491 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + +F FV R+ G GLGL+I++ + L G +++ S +T +P KE Sbjct: 492 LEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNIGSTFKITLPLKE 551 >gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1004 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E K+SF+ +S+E+R+PL IIG+ +L K K K Y+ ++ LL+++ND Sbjct: 627 ETKSSFLSRMSHEMRTPLNAIIGYLELGK--KNADDTEKLWDYMAKSDIAAHQLLSIIND 684 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685 +LD+A++++G + L L + +NE+++ ++ + +V+ D ++ D Sbjct: 685 VLDMASIESGKLHLEKVQFELTEEINEIREMFESQAWHKKLDFQVLMDSSEKIYIMGDPL 744 Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD--FIFSVKNNGSSIPEDMCKSVFN 740 RL QI +LSNA+ F+ G V L K A G + F V + G + E+ S+F+ Sbjct: 745 RLNQILINLLSNAVKFTPAGGKVTLSVKKTALQEGHVYYCFEVTDTGIGMSEEYLDSLFD 804 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV R+ G GLG+SI ++ + + G +S+ S+ T +P Sbjct: 805 PFVQQDASIARKYGGSGLGMSITKNLVTMKQGTISVKSTPGEGTVFTVNLP 855 >gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1118 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 14/251 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQ 608 R R L A +A+ K+ F+ +S+E+R+P+ IIG T L LKT L +KQ+ Sbjct: 351 RNGRELETARRAAEEANRAKSDFLARMSHEIRTPMNAIIGLTHLALKTQ----LTAKQAD 406 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+ +S S+ LL ++NDILD + ++AG + ++ + +L+D+LN + + + I Sbjct: 407 YLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLDDVLNNIINMLGLSAEQKGIE 466 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--FS 722 ++ + + V D RL Q+ + +NA+ F+ KG VIL+A +D + FS Sbjct: 467 FLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIKFTEKGE-VILQADLLEQDGTTAVIRFS 525 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I + +F F + Q G GLGLSI + + + GG +++ S Sbjct: 526 VRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRLVKMMGGDMAVVSEPGK 585 Query: 781 VTTINCRIPSK 791 + + +P K Sbjct: 586 GSEFSFTLPLK 596 >gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 951 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EA + A K+ F+ ++S+E+R+P+ ++G +LL ++L + +Q ++V + Sbjct: 268 LQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRL---DEQQRRFVSSVR 324 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+++NDILD + ++AG ++L + L D + +V + +A H + I + + Sbjct: 325 RSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVE 384 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAA-RDNGDFIFSVKNNGSS 729 + + D+ R+ Q+ ++ NA+ F+ +G +I LK ++ + V + G Sbjct: 385 NDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIG 444 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +++ +F+ F + R+ G GLGL+I + L GG + + S Sbjct: 445 ISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVES 493 >gi|225388888|ref|ZP_03758612.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme DSM 15981] gi|225045061|gb|EEG55307.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme DSM 15981] Length = 525 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL + +A R A++ K +F+ +S+++R+P+ I+G ++ + LG+ K + + Sbjct: 1 RALEDAYQAARVANDAKTNFLSSMSHDIRTPMNAIMGMA-VIAQANLGN-PEKLTDCLSK 58 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 IS SS LL L+N++LD++ +++G + L+ + L DL+ EV ++ + ++ + Sbjct: 59 ISTSSRHLLGLINEVLDMSRIESGKIDLSSEMVSLPDLVEEVIGICRPLSNQKHHQLFIS 118 Query: 673 SDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKN 725 +D + V D RL Q+ +LSNA+ ++ G T+ L+ G + F V + Sbjct: 119 ADHVRHEKVVTDMNRLQQVLMNLLSNAVKYTPDGGTISLRLRELPSIVPGRGQYEFIVSD 178 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 NG +PED +F F ++ + +G GLG++I E+ +++ G + + S Sbjct: 179 NGIGMPEDFVPHIFEPFTRAEDSRISKIQGTGLGMTITENIVSMMNGTIEVKS 231 >gi|170702755|ref|ZP_02893612.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170132326|gb|EDT00797.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 371 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 5/204 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VS+ELR+PL I G+ ++L+ ++ +L + Q ++ I S+ L +V DILD +++ Sbjct: 5 VSHELRTPLNVIYGWIEVLRNTRDDAL---EQQAIDAIDRSARSLTRMVGDILDASSLAT 61 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695 G ++++ + + L ++ + T I ++ D +RL Q+ + ++ Sbjct: 62 GKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLV 121 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753 SNA+ F+ G V + +RD+ + V + G IP VF+ F + RRG Sbjct: 122 SNALKFTPGGGAVTVTLSRDDAHAVLIVADTGQGIPPVFIPHVFDMFRRADGSPASPRRG 181 Query: 754 VGLGLSIVESFINLHGGHVSISSS 777 +GLGLSIV LHGG V + S+ Sbjct: 182 LGLGLSIVRHIAELHGGQVQVESA 205 >gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar Microtus str. 91001] gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola] gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis Angola] Length = 921 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|326801633|ref|YP_004319452.1| multi-sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326552397|gb|ADZ80782.1| multi-sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 575 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 1/217 (0%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 R+ D K +F+ VS+EL++P+++I +LL GSLN++Q Q V I+ S L Sbjct: 347 PFRELDLAKTNFIATVSHELKTPISSIKMSLELLNNKLTGSLNNEQQQLVAGIAEDSNRL 406 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L + ++L+++ V+ G ++LN ++L+ ++ T I + + L + Sbjct: 407 LRITGELLNMSQVETGNIQLNLRQSKPEEILHYALSAVQTAADHKMIHFDLQVEDPLPNV 466 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D ++ + + LSNA+ +S + T+I+ + FSVK+NG I E + +F Sbjct: 467 KVDPEKTAWVLTNFLSNAIRYSPEQGTIIISIRLEAKVLRFSVKDNGRGIDERYTQRIFE 526 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 R+ R G GLGL+I + FI GG + + S+ Sbjct: 527 RYFQ-IPGSNRSGSGLGLAISKEFIEAQGGEIGVESA 562 >gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004] Length = 927 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1010 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 7/237 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EAL + D K +F ++S+E R+PLT ++G + L + + G L +Q V + Sbjct: 338 KRAEALLEIDRAKTAFFSNISHEFRTPLTLMLGPLEELLSQQDGVLTKQQEANVTATHRN 397 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDG 675 + LL LVN +LD + ++A ++ Y + L+D+ ++ + + + V D Sbjct: 398 AMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNVTCKDL 457 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDM 734 + ++V DR ++ +LSNA ++ +GS +VIL+ + + I V++ G IP Sbjct: 458 SMAAYV-DRDMWEKVILNLLSNAFKYTLQGSISVILEESDQHA--ILLVRDTGVGIPVSE 514 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F RF V + G G+GLS+V + LH G +S+ S + +T +IP Sbjct: 515 LPNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKIP 571 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 27/241 (11%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQYVEYISAS 616 +E LRK E++ F S++L+ PL I F++LL+ S K +N+ Y + I +S Sbjct: 773 SELLRKNSELEQ-FAYIASHDLQEPLRKIRTFSELLQKSLQKGNPVNN----YFDKIQSS 827 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + L+ D+LD + + K + I LN +L +VK + + IK Sbjct: 828 AERMTQLIKDVLDYSRLSNTEEK--FVPIDLNTILQQVKGDFDLLIEQKQATIK---SNT 882 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFIFS 722 L +L Q+F+ ++ N++ F + + A+ D Sbjct: 883 LPVVKGIPLQLQQLFTNLIGNSLKFCENQPLISIFASPLPAPEIPFYPGLQEDISYVKLE 942 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781 +NG + + +F F R G G+GL++ + + H G + + +EG Sbjct: 943 FSDNGIGFEQQFAERIFAIFQRLNERKVYAGTGIGLALCKKIVENHHGIIRANGKLNEGA 1002 Query: 782 T 782 T Sbjct: 1003 T 1003 >gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] Length = 793 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 9/231 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER EK A A E K+ F+ +S+E+R+P+ ++G ++L ++ L +Q+ Sbjct: 254 AERLQQEKARA-EAATETKSRFLATMSHEIRTPINGVLGMAEVLNETR---LTPEQTSCT 309 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ASS LL +VNDILD + ++AG ++ L D++ +V ++ + I Sbjct: 310 STILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEIC 369 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNG 727 + I + F+ D R+ QI ++ NA+ F+ +G S + AR N V++ G Sbjct: 370 IDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEGHISITLNYDARHNIPLCIDVRDTG 429 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IPED +F+ F RR G GLGL+I GG + + S Sbjct: 430 VGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVS 480 >gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 936 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] Length = 939 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10] gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516] gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis KIM 10] gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516] gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] Length = 933 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae L20] gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 616 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 161 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+++ G IP+ + Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQR 281 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRS 323 >gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F] gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1] gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92] gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003] gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92] gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F] gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038] gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003] gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 930 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1588 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 15/248 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 946 QARQELETRAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNSNRNLTPKQVEY 1005 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L++DILDL+ V+AG M ++ + L LL+ V+ + + + Sbjct: 1006 AGVIHSAGSDLLQLIDDILDLSKVEAGKMNVDPERVSLQRLLDYVEATFHPLTTQKGLEF 1065 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA--------RDNGD 718 V + G G + D RL Q+ +LSNA+ F+ G I AA RD+G Sbjct: 1066 SVRTASGMPGQMLTDDSRLRQVLRNLLSNAVKFTETGGVELSIEPAAPEELPLGVRDSGP 1125 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F VK+ G IPE +++F F R+ G GLGLSI L GG ++ Sbjct: 1126 ALAFRVKDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAITAQ 1185 Query: 776 SS-DEGVT 782 S+ EG T Sbjct: 1186 SALGEGST 1193 >gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli ED1a] gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia coli ED1a] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG + ++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIMVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|162451335|ref|YP_001613702.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161917|emb|CAN93222.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 517 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 VTD R + E E LR++D K+ F+ +++ELR PL I +++ LG + Sbjct: 127 VTDITRRK----ELEEMLRESDRRKDDFLAMLAHELRGPLAPIRNAVAIMRV--LGLEDP 180 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K + I + + LV+D+LD++ + G + L T+ L DL+ E ++ + Sbjct: 181 KFVYARDIIERQVSHMARLVDDLLDVSRISRGKIALQRETLELADLVQEAVEATRPVIQT 240 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723 + V + ADR R++Q+ +L+NA F+ G + ++ +R + G+ + V Sbjct: 241 PGHTLSVTLPAEQLRIEADRVRIVQVIVNLLTNAAKFTPPGGRIGIEVSRSEAGEAVIRV 300 Query: 724 KNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I E M VF FV S+ R Q G+G+GL + + ++LHGG + + S+ G Sbjct: 301 TDTGVGIEEAMQPRVFEAFVQETSDLARSQG-GLGVGLWLAKQLVDLHGGRIDVESAGRG 359 >gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 586 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 75 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 131 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L I + L++++ +N I+ + L Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL QI ++SNA+ F+ G + L R DN F FS+++ G IP+ + Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQR 251 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VF F N+ + +G G+GL+I + L GG +++ S Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRS 293 >gi|296156227|ref|ZP_06839066.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. Ch1-1] gi|295893733|gb|EFG73512.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. Ch1-1] Length = 1344 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 12/238 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +TD + L E+ E L +AD KN F+ + +ELR+PL + DLL + +++ Sbjct: 955 LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---TVDV 1011 Query: 605 KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660 +Q + V I + LVN++LDL + +G +KLN + L ++ EV + I Sbjct: 1012 RQKAWAVGVIQRQGRAMTQLVNEMLDLTRITSGSIKLNRQAVTLETVVQSALEVCRPIVE 1071 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + H + + + + + L D RL Q+ I+ NA ++ G + L A ++ Sbjct: 1072 ERH-HTLSVALPEEPVL--MYVDPTRLSQVIENIVINAAKYTEPGGKIDLTATKNGRRLS 1128 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 VK+NG+ I M ++F+ FV GQ G+G+GLS+V + LHGG V S Sbjct: 1129 LRVKDNGAGIAPSMLNTLFDMFVQGPLPYGQLHNGLGVGLSVVRRLVELHGGSVEAVS 1186 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 11/253 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++++D AE L E +A + K+SF+ ++S+E+R+P+ IIG + L ++L Sbjct: 943 TVIDISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTEL- 1001 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++Q Y+E + S+ LL ++NDILD + ++AG + + + L D+++ + + Sbjct: 1002 --DARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVGL 1059 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG 717 K E + + ++ + V D RL QI + +NA+ F+ G +++ + Sbjct: 1060 KAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRVMDQGA 1119 Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D++ FSV + G + + +F F R+ G GLGL+I L GG + Sbjct: 1120 DWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEI 1179 Query: 773 SISSSDEGVTTIN 785 + S+ +T Sbjct: 1180 RVESAPGAGSTFG 1192 >gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1149 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 15/245 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT + A+ AL E EA A ++ F+ ++S+E+R+P+ +IG T LL + LN Sbjct: 489 DVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTP---LN 545 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q +Y E I +S LL ++NDILDL+ +++G M+L + + + +A Sbjct: 546 ERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAF 605 Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------- 714 + + +I+ ++D RL QI +L NA+ F+ G V L+ +R Sbjct: 606 AKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFTEHGE-VTLQVSRYPDFDLEA 664 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D + V++ G IP D +F F V + G GLGL I + + GG + Sbjct: 665 DQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICKRLSEMLGGGI 724 Query: 773 SISSS 777 S+ S+ Sbjct: 725 SVESA 729 >gi|282165286|ref|YP_003357671.1| putative histidine kinase [Methanocella paludicola SANAE] gi|282157600|dbj|BAI62688.1| putative histidine kinase [Methanocella paludicola SANAE] Length = 589 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 2/251 (0%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 NV D+ R + L E E L+ D K F +S+ELR+PL I G+T+LL LG + Sbjct: 327 ANVIDAARIHKELEESYEKLKDLDRTKMEFFTLISHELRNPLAIIKGYTELLYDGTLGPI 386 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N KQ + + + L ++V + +++++++ ++ + L D+++E+ +++ Sbjct: 387 NDKQKDKLARVRENVDKLADMVGKMSEISSLESRKYTVDRVPVSLGDMVSEIAETMGFLF 446 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 I + V L DR+++ Q+ +L+NA+ ++ +G V + A D + S Sbjct: 447 QNKRITLNVDIPENLPLVEVDRKKMEQVLLNLLNNALKYTPEGGHVTVTAEDRPADILVS 506 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G IP+ +F+ F + ++ + +G GLGL+I I HGG + S Sbjct: 507 VWDTGIGIPQKDLDKIFSGFYHSGYKLSYEYKGPGLGLAISRKIIEGHGGRIWAKSEVGK 566 Query: 781 VTTINCRIPSK 791 +T IP + Sbjct: 567 GSTFYFTIPKR 577 >gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 843 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 130/251 (51%), Gaps = 15/251 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-- 607 R AL E + R A+ K +F+ +S+++R+P+ I+G T + + +L S + Sbjct: 311 RQRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQ----ANLESPEKIR 366 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +E I SS LL+L+N++LD++ +++G + L + + L D++ EV ++E + Sbjct: 367 DCLEKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNEKHQ 426 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFI 720 ++ I + + +AD RL Q+ +LSNA+ ++ +G T+ L+ D + Sbjct: 427 LFRISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKRQYE 486 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F +NG I +D +F+ F ++ + +G GLG++I E+ + + G + + S + Sbjct: 487 FICTDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVKSEE 546 Query: 779 EGVTTINCRIP 789 +T+ +P Sbjct: 547 GAGSTVTVSVP 557 >gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1169 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 28/387 (7%) Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 ++T E + L + I+ + EG +V+ R+ N +R L+ PG Sbjct: 560 DITAHKQAEEQRQYLESILHSAIEAIGEGFSVYNAADRLTWCNEQYRRLYTISAPAFVPG 619 Query: 478 THIRNIAATCSRY------YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSI 530 I RY Y E+ + A + R+S ++ L+D L+ Sbjct: 620 NSFEEII----RYGIEHGQYPEAQA-NPEAWVQRRLLAHRQSESNFIQKLADGRWLDVRE 674 Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 + + V++T+ + A++A N A K+ F+ +S+E+R+P+ +I+G Sbjct: 675 RKTADGSIVGFRVDITELMHAKQAAEAANRA-------KSEFLATMSHEIRTPMNSILGM 727 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L + S+ Y I S LL ++ND+LDLA V++G ++L+ + + L Sbjct: 728 AQILCGPDVSDPRSR--DYGRVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQL 785 Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ + I DG + ++AD RL Q+ S ++SNA+ F++ GS I Sbjct: 786 AQDILALFRGVAQGKGLIISAEWDGPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSVDI 845 Query: 710 LKAARDN-GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763 + D DF FSV + G I + + +F F RR G GLGLSIV Sbjct: 846 RISEIDRTNDFATLEFSVTDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRH 905 Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790 L GG + S ++ + + RIP+ Sbjct: 906 LAELMGGEAGLESEEKKGSRLWFRIPA 932 >gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 910 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 128/246 (52%), Gaps = 6/246 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N T + + L E E +D +K++F+ ++S+E+R+PL I+GF++L+ + Sbjct: 525 NNTKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSC---DDP 581 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +Y+ I +++ +LL L+NDILDL+ +++GI++ L+ + NE+ + K+ Sbjct: 582 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 641 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + +++ + G DR RL Q++ L+NA+ + G + + + + G F V Sbjct: 642 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYV 700 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +++G IP ++ VF RF Q G GLGL+I + I G V SS +T Sbjct: 701 EDSGVGIPLEVQDRVFGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGST 758 Query: 784 INCRIP 789 IP Sbjct: 759 FWAWIP 764 >gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua] gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua] gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 927 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L + L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum] Length = 2062 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E A K+ F+ ++S+E+R+P+ IIG TDL ++L ++Q +Y+ + +S+ Sbjct: 1338 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLSMVQSSAGS 1394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 LL ++NDILD + ++AG ++L+ + L L + ++++ + H+ I + I+ Sbjct: 1395 LLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPD 1454 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPED 733 S + D RL QI + ++ NA+ F+S+G V ++ + G+ + FSV + G IP+D Sbjct: 1455 SLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPKD 1514 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F F RR G GLGL+I + L G +S +S S +G T Sbjct: 1515 KLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGST 1566 >gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655] Length = 776 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 131/247 (53%), Gaps = 14/247 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT-T 783 IP+D +F + V ++H G + G+GL++ GG ++++S +G T T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSH-GGKPATGIGLAVSRRLAKNMGGDITVTSEQGKGSTFT 498 Query: 784 INCRIPS 790 + PS Sbjct: 499 LTIHAPS 505 >gi|331652019|ref|ZP_08353038.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] gi|331050297|gb|EGI22355.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] Length = 914 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRTLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ KG ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDKGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] Length = 656 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 133/257 (51%), Gaps = 15/257 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ R++ L + E A + K+ F+ ++S+E+R+PL +IG T L Sbjct: 255 DVTERKRSDEMLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAVIGLT---GLLLDTDLT 311 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Y+E + SS LL+++NDILD + +D G+M+L +S L + + T++ Sbjct: 312 PEQRNYLEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDLMVTRVA 371 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGDF 719 E + +KV+ D +L + V D RL Q+ + +LSNA+ F+ KG +V A + + Sbjct: 372 EKGLVLKVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGFVEVSVRGNAIPEGFEL 431 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V + G +P+D +F F RR G GLGL+I + + + GG + + S Sbjct: 432 RFDVLDTGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGGRI-WAKS 490 Query: 778 DEGVT-----TINCRIP 789 + GV TI ++P Sbjct: 491 NPGVGSTFTFTIKVKLP 507 >gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1253 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ N Sbjct: 852 SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSQNFAPENLANG 908 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L + + I Sbjct: 909 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPAALAREI 966 Query: 668 RIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 +++ D GS F D RL Q+ + +LSNA+ F++ G V + ++G V+ Sbjct: 967 ALEL--DAPAGSELWFFGDAGRLQQVLTNLLSNALKFTASGGNVRVGLDVEDGRLRLCVQ 1024 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 ++G I + VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 1025 DSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 1082 >gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 1804 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1337 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLSPKQVEFA 1396 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1397 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1456 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ GS VI + D Sbjct: 1457 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1516 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 +G I FSV + G I + +F F R+ G GLGLSI Sbjct: 1517 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1576 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1577 LLGGEIHAASEPGRGSTFTLYLP 1599 >gi|196033335|ref|ZP_03100747.1| sensory box histidine kinase [Bacillus cereus W] gi|218903030|ref|YP_002450864.1| sensory box histidine kinase [Bacillus cereus AH820] gi|228926974|ref|ZP_04090040.1| hypothetical protein bthur0010_16900 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121461|ref|ZP_04250688.1| hypothetical protein bcere0016_17650 [Bacillus cereus 95/8201] gi|195993769|gb|EDX57725.1| sensory box histidine kinase [Bacillus cereus W] gi|218536683|gb|ACK89081.1| sensory box histidine kinase [Bacillus cereus AH820] gi|228661925|gb|EEL17538.1| hypothetical protein bcere0016_17650 [Bacillus cereus 95/8201] gi|228832709|gb|EEM78280.1| hypothetical protein bthur0010_16900 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 288 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 135/246 (54%), Gaps = 13/246 (5%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL + + Sbjct: 41 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 99 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 QYV + S L N V+++L+ ++ ++L+ S + + L+ ++ ++ + Sbjct: 100 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 159 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 N+ + D +L + D ++++F ++SN++ + G +++ ++ + + VKN Sbjct: 160 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIEVKN 218 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778 G IP++ VF +F +RG++ G G+GL+I S LH G +++ S++ Sbjct: 219 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEK 274 Query: 779 EGVTTI 784 E + TI Sbjct: 275 ETIFTI 280 >gi|159900448|ref|YP_001546695.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893487|gb|ABX06567.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 422 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A E + +F+ + S+ELR+PLT + +++ L+ S + ++Q + +E I A + + Sbjct: 197 QQAWERQQAFIANASHELRAPLTLMRASSEIALRES---TDPAEQQELLEDILAETYHMA 253 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L L+ +DA L TI L +L +V + H+ + ++V G Sbjct: 254 RLVEDLLLLSRLDAAKTHLQRETIDLAELCQDVAKDAGRLAHDAGVEVRVAH--AEGQIK 311 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 DR RL Q+ +L NA+ + +G +V++ A R + SV + G I K +F R Sbjct: 312 VDRTRLRQVLLILLDNAIAHTPRGGSVVIHAERKQTSYQISVIDTGKGIEPKHLKHIFER 371 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V +A RG GLGLSI ++ I H G + S+ TT+ +P Sbjct: 372 FYRVDSARIAGGRGNGLGLSIAQALIQAHNGTIEAQSNVGTGTTMLINLP 421 >gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 910 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +T K+EA R A++ K++FV ++S+E+R+PL ++G LL+ + SL+ Q YV I Sbjct: 523 ITAKDEAER-ANQAKSTFVANMSHEIRTPLNGVLGLAQLLEKT---SLSVDQRSYVRRIL 578 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL VNDILD A ++AG +++ S L+ LL V S+ + + ++ Sbjct: 579 DSGQQLLTTVNDILDFAKMEAGRLEIEESGFSLHALLQPVIDSVFVEEESSPKFCLDVAP 638 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSI 730 G + + DR R+ Q+ +L NA+ F+ +G V+ + G + FS+ + G I Sbjct: 639 GIPENLIGDRFRIGQVLINLLGNALKFTKEGHVSLHVVSMGLGEKGVILKFSIIDTGVGI 698 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 D+ K +F F R G GLGL+I + + GG + + SS Sbjct: 699 ALDVQKQLFVPFTQADSSVTRNYGGTGLGLTICKKLVVAMGGDIGLESS 747 >gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 801 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 133/257 (51%), Gaps = 13/257 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT+ R E L + A++ K+ F+ ++S+E+R+P+ I+G+ D+L LG Sbjct: 366 TVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL----LG 421 Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L ++ V I + LL+L+NDILDL+ ++AG + ++ ++ L L+ +++ + Sbjct: 422 HLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQ 481 Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714 + E N+ +V +G++ S D RL Q+ ++ NA+ F+ +GS + +K A Sbjct: 482 VRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGA- 540 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D FS+ + G I ++ +F F R+ G GLGL+I + I + G + Sbjct: 541 DPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEM 600 Query: 773 SISSSDEGVTTINCRIP 789 S+ S +T R+P Sbjct: 601 SLESELGEGSTFFVRLP 617 >gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1075 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 7/242 (2%) Query: 540 LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 LT V ++T R E AL E+ E A+ K++F+ +S+E+R+P+ I+G +LL+ S Sbjct: 669 LTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRES- 727 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S+Q VE ++ S LL+L+NDILDL+ ++A + L + L L+ +V Sbjct: 728 --DLTSRQHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLF 785 Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + +K L + V D RL QI ++ NA+ F+ +G + +G Sbjct: 786 GYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQGHVSVELNPLADG 845 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F +++ G + + +++F F R G GLGL+I + L GG + + Sbjct: 846 RLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQLE 905 Query: 776 SS 777 S+ Sbjct: 906 ST 907 >gi|254518211|ref|ZP_05130267.1| two-component sensor kinase [Clostridium sp. 7_2_43FAA] gi|226911960|gb|EEH97161.1| two-component sensor kinase [Clostridium sp. 7_2_43FAA] Length = 373 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 12/235 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RKA + KN + +VS++LR+PLT+I+G+ +++ + K + +Y I+ + LN Sbjct: 139 RKAQKTKNDLITNVSHDLRTPLTSIMGYLEIIDSDKY--YDEVTLRYYANIAYEKSKSLN 196 Query: 623 -LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L+ND+ +L + +KL+ + I L +LL +V + +N+ +V SD KL Sbjct: 197 LLINDLFELTKMQNNTIKLDKNDINLVELLGQVVAYFEVQFKNSNMESRVNFSDDKL-IV 255 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD +L++ F +LSNA+ + G V + KA +N + + N G SIP + Sbjct: 256 NADGGKLVRAFENLLSNAIKYGEDGHYVDIVTKAEEENA--VVQIINYGQSIPSVDLPYI 313 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF + + G GLGLSI ++ I LH G++S + SD+ T R+P K Sbjct: 314 FDRFYRIEKSRNSNIGGSGLGLSITKNIIELHNGNIS-AYSDDYKTIFEVRLPIK 367 >gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1009 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 10/226 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K F+ +S+E+R+PL+++IG+T+LL L Q I ++ + LL +V Sbjct: 518 ASQAKTDFLASMSHEIRTPLSSVIGYTELLLDDP--DLTEGQRLQASRIRSAGSALLTVV 575 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 +DILD + ++AG + L+ L+ L+ + + I+V D L + V D Sbjct: 576 DDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQTLVGD 635 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 + RL QI L+NA+ F+ +G V+ A + D SV + G I + +F Sbjct: 636 QNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQARLF 695 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 RF V + R + G GLGL+I + I L GG + +S+ EG T Sbjct: 696 KRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGEGST 741 >gi|189466273|ref|ZP_03015058.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM 17393] gi|189434537|gb|EDV03522.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM 17393] Length = 644 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +E AL E + ++ +K++F+ ++S+E+R+PL I+GF+D+L + G+ +Q YV Sbjct: 402 SESALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GTSVDEQQGYV 459 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669 + I +S +LL L+NDILD++ ++A + + L +V S++ + EN Sbjct: 460 DIIKTNSDLLLRLINDILDVSRLEADRVTFTIEKCDVVPLCQQVLASVSQARKSENEFIF 519 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNG 727 + D + D QRL Q+ +LSNA F+ G + LK D+ + FSV + G Sbjct: 520 EC--DRESVDLRTDTQRLQQVIINLLSNADKFTRNGK-ITLKLEVDDEKRVATFSVSDTG 576 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + IP + K VF RF Q G GLGLSI + + GG + + S Sbjct: 577 TGIPLEKQKQVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWVDS 623 >gi|14572558|gb|AAK64658.1| ethylene receptor [Malus x domestica] Length = 570 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 144 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 203 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 ++Q VE I SS +L L+ND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 204 ---TAEQRLMVETILRSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 260 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + ++ + + +D + + + D +RL+Q ++ NA+ FS +GS I + Sbjct: 261 PVASIKRLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 319 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ K +F +F R G G Sbjct: 320 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQALATRNSGGSG 378 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 379 LGLAICKRFVNLMEGHIWIESEGLG 403 >gi|83944051|ref|ZP_00956508.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36] gi|83845298|gb|EAP83178.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36] Length = 798 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 546 TDSVRAERALTEKNEALR------------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +D+V ERA + ALR K +++K+ FV VS+ELR+PLT+I G L Sbjct: 532 SDAVVVERA--KNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPLTSIKGALGL 589 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ ++ + V+ +A+ L+ LVNDILD+ ++AG M + L D++ Sbjct: 590 LEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKPEKLGDIVTL 649 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + E + I V + + D+ R++Q+ + +LSNA F+ + V + A Sbjct: 650 AAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYPETAVTVTTA 709 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 SV N G+ I E+ + +F F ++ QR G GLGL+I + GG Sbjct: 710 PVGDMTKISVTNLGNGISEEFRERIFQPFSQAEASNTRQRGGTGLGLNISRHLVEAMGGE 769 Query: 772 VSISS--SDEGVTTINCRIPSKE 792 + S +E V C PS E Sbjct: 770 IGFDSVPGEETVFWFTC--PSTE 790 >gi|332306526|ref|YP_004434377.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173855|gb|AEE23109.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1040 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 12/223 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+KA +K++F+ ++S+E+R+PL IIG +L+K L Q +Y+E S L Sbjct: 507 LQKASRVKSAFISNISHEMRTPLNGIIGTLNLVKRDPL---TDNQQRYIEMTEVSVNTLS 563 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG--S 679 LVND+LDL+ ++AG + L++ + +L+ + S+A K E + VI +L S Sbjct: 564 TLVNDVLDLSKIEAGKLDLDFKSFNPINLIESLCGSMAVKAQEKGLEF-VIDVSRLDCVS 622 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGSSIPEDMC 735 V+D R QI + +++NA+ F+ KG + + D+G + +++++G+ I ++ Sbjct: 623 MVSDPHRFSQIMTNLVNNAIKFTEKGYIKVSAYTQQTDSGSVVLHCAIEDSGTGIAKENQ 682 Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F+ F ++ + G GLGLSI + L G V S Sbjct: 683 HKLFSAFSQEDSSIASKHGGTGLGLSICRQLVTLLNGDVRFES 725 >gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341] gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341] Length = 969 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ K++F+ +S+E+R+P+ ++G LL+ + SL S Q YV+ I+ S LL + Sbjct: 465 QANRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++ S L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALEKGITLSYQIDENVSQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ +G F+V+++G I E S+F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGQVCIRVRFDTQSGGLCFAVEDSGIGIAEQDQVSLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + +SS Sbjct: 642 F-TQAEAGRRKQGGTGLGLAISRKLVEAMGGELQLSS 677 >gi|238757840|ref|ZP_04619022.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236] gi|238703825|gb|EEP96360.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236] Length = 909 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 7/238 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R LT + +A++ K+S + +S+ELR+PL+ ++G +LL+ + ++ KQS+ Sbjct: 373 RELTLAKQQAEQANKRKSSHLTTISHELRTPLSGVLGALELLQMTP---MSDKQSRLANT 429 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S + LL ++N++LD + +++G + L+ L LL++ +I + +K Sbjct: 430 ASQCTLSLLGIINNLLDFSRIESGQLSLHVEETPLLPLLDQAMHTIQGLGQTKGLALKTF 489 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 K+ + D RL QI +L NA+ F+ G + L R N IF+V ++G I Sbjct: 490 VGHKVPLHLEVDGMRLRQILVNLLGNALKFTENGG-ICLTVKRCNDRLIFAVSDSGHGIS 548 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K+VF F + +G +G GLGL+I + + GG + + SS T I+ +P Sbjct: 549 LADQKAVFEPFFQS--QGHIQGTGLGLTIASNLAKMMGGWLELHSSSGLGTCISFLLP 604 >gi|225851032|ref|YP_002731266.1| histidine kinase [Persephonella marina EX-H1] gi|225645773|gb|ACO03959.1| histidine kinase [Persephonella marina EX-H1] Length = 666 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 E+ E L KA K++F+ ++S+ELR+PL +IIGF L+ ++ N K ++ +E Sbjct: 432 ERLELLHKAQSASRAKSAFISNMSHELRTPLNSIIGFAQYLQMAETDEENIKAARSIE-- 489 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL+++NDILD A ++AG +K+N + + L++E+ + + E +++ ++ Sbjct: 490 -LAGRHLLDMINDILDFAKIEAGAVKVNKRSFPVKKLIDEISAMVQPLIQEKGLKL-ILP 547 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + D + L Q+ +LSNA+ F+ +G + + +DNG FSV + G I + Sbjct: 548 ENTDTVINTDYRLLKQVLLNLLSNAVKFTEEG-YIKIDVRKDNGKIYFSVIDTGIGISRE 606 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +F F + N + + +G GLGL+I + +I L GG + S EG Sbjct: 607 NIDKLFKDFTQLENPLQKKYKGTGLGLAISKKYIELLGGEIYAYSEGEG 655 >gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1578 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++ E L + E A+ K+ F+ ++S+ELR+PL I+GFT LL + Sbjct: 1097 THKDISQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLL--GRDT 1154 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL++ + ++ I+ S LL L++DILDL+ ++ G + L + L+ LL V++ ++ Sbjct: 1155 SLSAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSP 1214 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K I++ + D L ++ D ++L QI +L+NA+ F+ +G TV L+ D Sbjct: 1215 KAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQG-TVTLRVNLSKIDQ 1273 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 F V++ G I D ++F FV + A + +G GLGL+I + + L GG + Sbjct: 1274 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKINQGSGLGLAISQKLVQLMGGKIE 1333 Query: 774 ISS 776 ++S Sbjct: 1334 VNS 1336 >gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3] gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A:Hpt [Shewanella piezotolerans WP3] Length = 935 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 13/240 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K AL +A IK+ F+ ++S+ELR+PL +IGF LLKT L+S Q Y+ I S Sbjct: 293 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYIRTIERS 347 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 +T LL+++NDILD + ++AG M L L +++ E +++ E I + + D + Sbjct: 348 ATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVIDVDPR 407 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIP 731 + V D R Q+ + ++ NA+ F+ GS + + D V+ + G I Sbjct: 408 IPEDVTGDAMRFSQVITNLVGNAVKFTDSGSVQLKMQLEEIADGSVHVRTEIIDTGIGID 467 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D S+F F RR G GLGL I + +N GG + +S + +T +P Sbjct: 468 ADKLASLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTFWFSLP 527 >gi|226225128|ref|YP_002759235.1| two-component sensor histidine kinase [Listeria monocytogenes Clip81459] gi|254854408|ref|ZP_05243756.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503] gi|255519926|ref|ZP_05387163.1| two-component sensor histidine kinase [Listeria monocytogenes FSL J1-175] gi|300766081|ref|ZP_07076049.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017] gi|225877590|emb|CAS06304.1| Putative two-component sensor histidine kinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607808|gb|EEW20416.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503] gi|300513227|gb|EFK40306.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017] Length = 459 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L+K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L++ ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 D ++ D + L Q++S +L+NA+ F+ +G + + V+++G I Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398 Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 EDM K +F+RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457 >gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1064 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 14/217 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+P+ IIG DLL TS SLN Q I SS LLN++NDILD + Sbjct: 422 FLATMSHEIRTPMNGIIGMIDLLLTS---SLNRDQRSMTNTIRDSSFSLLNIINDILDFS 478 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++AG ++L +++LL V +I E + +++ +D + + D R+ Q+ Sbjct: 479 KIEAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDPVRIRQV 538 Query: 691 FSKILSNAMDFS----SKGSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF 742 ++ NA+ FS S+G I LK + +F +++NG I + +F F Sbjct: 539 LFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQLVFLTIEIQDNGIGIEAKQLERLFQPF 598 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R+ G GLGL+I ++ +NL GG + +SS+ Sbjct: 599 TQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDVSST 635 >gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134] gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134] Length = 670 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 160/344 (46%), Gaps = 28/344 (8%) Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506 + + +G I +N AF + K EE+ L H + S Y+ S D++ + Sbjct: 317 ITITDRNGYITHANEAFCRVSKYEEHELLGQKH----SLVNSGYHPRSFFKDMWGTVRKG 372 Query: 507 F----DDERKSLQGTLELLSDSVLEYSIIPL--------PNAQTMLTFVNVTDSVRAERA 554 + ++ GT + + +I+P P + F ++T+ AE+ Sbjct: 373 MLWRGEIHNRAKDGTFYWV-----DVTIVPFLYKDEGHDPYKYLFIRF-DITERKNAEKQ 426 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + +A+ +K++F+ ++S+E+R+PL I+G L++ + S N Y I Sbjct: 427 LIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIE---IESDNETMLHYAHLIG 483 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLN +N ILDL+ ++A ++++ + + +L++ + QS+ + NI + + + Sbjct: 484 QSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANSRNIYLNIEFN 543 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + D L Q+ + +L NA+ F+ +G V L+ +N V + G I E Sbjct: 544 LAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRLNDENNCLTIEVIDTGIGIEEHF 602 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 K +F F + +RR G GLGL+I + + L GG + + S Sbjct: 603 LKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIKVHS 646 >gi|83943103|ref|ZP_00955563.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins) [Sulfitobacter sp. EE-36] gi|83846111|gb|EAP83988.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins) [Sulfitobacter sp. EE-36] Length = 515 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 31/279 (11%) Query: 527 EYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVS 577 EY ++ L T +T + R E E LRKA + K+ F+ +S Sbjct: 211 EYKLLALVIAGTATTITLGGLFTYFIENRTRMESIEELRKARDAAEGASRAKSEFMSVLS 270 Query: 578 YELRSPLTNIIGFTDLLK----------------TSKLGSLNSKQSQ-YVEYISASSTIL 620 +ELR+PLT +IG+ L T K ++ Q++ Y + + + L Sbjct: 271 HELRTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHL 330 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L ++NDILD +++ +KL +T LL +V+ ++ + I DG L Sbjct: 331 LTIINDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLH-IPDGSL-DV 388 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 ADR R LQI ++ NA+ FS KG + L+A D G F F V++NG + + +S+F Sbjct: 389 NADRGRCLQILINLVGNALKFS-KGKDIFLRAEVDGGGFRFEVEDNGVGMEQKDLESIFQ 447 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + +A G GLGL+I + HGG +S++S+ Sbjct: 448 AFTQIESADNRSEGGTGLGLAICKKLALAHGGDISVAST 486 >gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes] Length = 616 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 153/293 (52%), Gaps = 21/293 (7%) Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERAL--TEKNEAL-- 562 + E+K++Q T + + Y+ +P T+L+ + ++T ++ E+ +KN L Sbjct: 305 NKEKKTIQNT-----STYVIYNGMP-----TVLSILHDITSKIQVEKLEQDVKKNIELLN 354 Query: 563 --RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 R+ +++ F+ ++S+EL++PL I LL + K+ +Y++ I + L Sbjct: 355 ESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKEDKYLKLIKQNCYRL 414 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + L+N++LD +D+G +KLN + L+ E+ S+ + I I ++ + Sbjct: 415 MKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKEINIIFDTNVEEKII 474 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739 D ++ +I +LSN++ F++ G + + +D+ ++++ VK+ G IP D +S+F Sbjct: 475 AVDPDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSEEYVYIHVKDTGVGIPSDKLESIF 533 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF + + + G G+GL +V+SF+ +H G V+I+S T ++P+ Sbjct: 534 ERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHKGEVTINSELGKGTEFIIKLPA 586 >gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1478 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 107/445 (24%), Positives = 204/445 (45%), Gaps = 38/445 (8%) Query: 353 DELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-G 410 D+ LE F + N L + + Y+++ K +P T V+ S+ R Sbjct: 315 DQPLERFFKEDNFLAHLQANDSQQSGFLGRYETTFFTKTGTSVPVSVTASVMKNSSDRIQ 374 Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470 G + + ++++ + + + ++ Q + + +GV V G I NPA ++ E Sbjct: 375 GIVCLVQDISAR----KRADEALRRQALMFETIYDGVIVTDLKGHILDWNPAAERIFGYE 430 Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527 + + + TC Y + L ++ S E + + + D V E Sbjct: 431 KTEV--------LGQTCGMVYQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCE 482 Query: 528 YSIIPL------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 ++PL P A + +VT+ E L E EA +A K F+ ++S+E+R Sbjct: 483 TVVVPLRDDLGRPIAAIGVNR-DVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIR 541 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +P+ ++G ++LL T+ LN +Q +V+ + S LL ++NDILD + ++AG M+L+ Sbjct: 542 TPMNGVLGMSELLLTT---DLNPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLD 598 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700 + +N L +V + + ++ + ++ D + + D RL QI + ++SN++ Sbjct: 599 VDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIK 658 Query: 701 FSSKGSTVILKAA------RDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR 751 F+ G VI + +D F+V++ G I PED K +F F V ++ + Sbjct: 659 FTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSK-LFQAFSQVDSSTTRKY 717 Query: 752 RGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I + + + GG + + S Sbjct: 718 GGTGLGLAICKQLVEMMGGEIGVES 742 >gi|54260390|dbj|BAD61001.1| ethylene receptor [Pyrus pyrifolia] Length = 741 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 139/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ + Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 L +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + EV I Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHDLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + + ++ + + +D + + + D +RL+QI ++ NA+ FS +GS I + Sbjct: 432 PVASVRKLSVALNIAADLPVCA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ ++F +F + G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574 >gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I] gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I] Length = 1238 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +GD Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1240 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 16/217 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ ++G T+LL+ ++L SKQ ++V+ + S LL +++DIL Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682 D + ++AG + L L+ LL++V + E N R K + +D Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNARRKELELVYQRADSVPQRMRG 674 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QI + +L NA+ F+ G + D+G +F + ++G I D+ +F F Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVALSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 734 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R+ G GLGL+I + GG +++ S+ Sbjct: 735 QQADSSTARKYGGTGLGLAISRQLAEMMGGTLALDST 771 >gi|115372021|ref|ZP_01459333.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1] gi|115370986|gb|EAU69909.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1] Length = 336 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 ++T DDER ++Q + D +++ + PL + + R E L ++ EA Sbjct: 45 VLTGTDDERLAVQAVHQGAQDYLVKGQVTGPL----LVRALRYAIERKRVEEGL-KREEA 99 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 R+ + F+ + ++LR+PL I G LL + G L Q + V IS S+ + Sbjct: 100 QRQTAVFREQFLAILGHDLRNPLQAISGNAGLLL--RYGGLAEPQRKAVNRISISADRMA 157 Query: 622 NLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 ++ND+LD G + + + L+D+L +V + + + N + + +G G + Sbjct: 158 RMINDVLDFTRARLGGGYPVMRARVNLHDVLRQVVEELEVAHAQRNFELSLSGNG-WGEW 216 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739 AD + Q S ++ NA+ +S + + V + RD G+ I V N G+ IPE+ VF Sbjct: 217 DADS--IAQAASNLVGNAVQYSPEDTPVAV-VVRDEGEGIRVEVHNQGTPIPEERLPHVF 273 Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + FV AH R G+GLGL I + HGG + ++S+ Sbjct: 274 DPFVRGAEGAHNKARTGLGLGLYITHEIVRAHGGTLRVTST 314 >gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 784 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 133/257 (51%), Gaps = 13/257 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT+ R E L + A++ K+ F+ ++S+E+R+P+ I+G+ D+L LG Sbjct: 349 TVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL----LG 404 Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L ++ V I + LL+L+NDILDL+ ++AG + ++ ++ L L+ +++ + Sbjct: 405 HLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQ 464 Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714 + E N+ +V +G++ S D RL Q+ ++ NA+ F+ +GS + +K A Sbjct: 465 VRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGA- 523 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D FS+ + G I ++ +F F R+ G GLGL+I + I + G + Sbjct: 524 DPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEM 583 Query: 773 SISSSDEGVTTINCRIP 789 S+ S +T R+P Sbjct: 584 SLESELGEGSTFFVRLP 600 >gi|325681395|ref|ZP_08160921.1| putative alkaline phosphatase synthesis sensor protein PhoR [Ruminococcus albus 8] gi|324106885|gb|EGC01175.1| putative alkaline phosphatase synthesis sensor protein PhoR [Ruminococcus albus 8] Length = 508 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 14/235 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L +++KN F+ VS+ELR+PLT I G+T+ + T K+ V I++ + Sbjct: 246 EELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFKKGMRV--INSETER 303 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS----DG 675 L +V ++LD + + + L TI D+L E+ +++ +++ R+ I+ + Sbjct: 304 LSQMVEELLDFSRIQDNRLLLQMDTI---DILAELGETVL--IYQERARVLGITLNYFEP 358 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + FV D+ RL Q+F ++ NA+ +S KG TV ++A + GD SV + G I ++ Sbjct: 359 DMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGDICISVSDTGIGISKED 418 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F H RRG G+GL++ + I HGG ++I S TT+ +P Sbjct: 419 LPRIKQKFFKANH--TRRGSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471 >gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Escherichia coli 042] Length = 778 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L +Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTVEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf] gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf] Length = 615 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++ F+ ++S+EL++PL I LL + KQ +Y++ I + L+ Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N++LD +D+G +KLN + L+ E+ S+ + I I ++ + Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSN++ F++ G + +K +D G+ ++ VK+ G IP D +S+F R Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGHIFVK-IKDCGENVYIHVKDTGVGIPSDKLESIFER 534 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F V + + G G+GL +V+SF+ +H G V I S T ++P+ Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585 >gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis] Length = 1238 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +GD Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 585 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----Q 608 R L + A K+ F+ +S+ELR+PLT+I GF +L++ L +QS Q Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQ 390 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENN 666 E+++A L+ +ILDLA V+AG M + + L L++EV + ++ + Sbjct: 391 GAEHLNA-------LLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQ 443 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725 + +++ + + V DR RL QI + +LSNA+ F+++G + ++ D +F V + Sbjct: 444 LEARLLPEAE-QPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTD 502 Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I ++ + +F +F R Q G GLGLS+ + L GG +++ SS Sbjct: 503 TGPGIAPELHEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSS 556 >gi|257487947|ref|ZP_05641988.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:HWE histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008635|gb|EGH88691.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 998 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608 ER + + EA+R DE+ V VS++LR+P++ II +++ +G +S+ + Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + I ++T + +L+ D+LD A ++AG +L+ + + LL E + E NI Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + + L AD +R+ Q+ S ++ NA+ F+ KG + + A + +F V ++G Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780 IP + +F R+ S G RG GLGL I + I HGG + + SS D G Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSG 750 >gi|255527026|ref|ZP_05393917.1| histidine kinase [Clostridium carboxidivorans P7] gi|296186976|ref|ZP_06855376.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255509282|gb|EET85631.1| histidine kinase [Clostridium carboxidivorans P7] gi|296048414|gb|EFG87848.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 518 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L K E+ R A++ K+ + +VS++LR+PLT+I G+ L K K S ++ +Y+ Sbjct: 275 KELNRKIESERNAEKTKSDLITNVSHDLRTPLTSIKGYIGLAKDGKYKS-EAELQEYLNI 333 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671 S L L+N++ + + + LN I N LL ++ + + ENN+ I K Sbjct: 334 AYNKSEKLEVLINNLFEYTKLTNKGISLNKQNISFNGLLEQLIEELYVICEENNVVIEKS 393 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 I D K+ ++V D +++++F +L N++ +S K + + +++ + +VKN ++ Sbjct: 394 IPDEKICAYV-DGDKMVRVFENLLMNSIRYSPKPGEINVDLYKEDKFVVVAVKNKCENVD 452 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 E+ K +F+RF V + G GLGL+I +S + LHGG + Sbjct: 453 EEELKKIFDRFYRVDKSRAQATGGSGLGLAIAKSIVELHGGKI 495 >gi|255532397|ref|YP_003092769.1| ATPase [Pedobacter heparinus DSM 2366] gi|255345381|gb|ACU04707.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 586 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 1/217 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ DE K +F+ VS+EL++P+++I L+ ++G +N +Q + V++I LL Sbjct: 353 FKELDEAKTNFIATVSHELKTPISSIKMSLKLMDDERVGVMNPEQKELVQHIREDCGRLL 412 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + +++LDLA V+ G ++LN+ + ++ + + +I +++IS KL Sbjct: 413 KITSELLDLAQVETGNLQLNFVKSDPRKIAIYAMDAVRFQAEQKSIELELISKNKLPQIN 472 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++ + LSNA+ +S+ S VI++ N FSV++ G I E K +F + Sbjct: 473 VDIEKTAWVLVNFLSNALRYSAVKSKVIVQVIEKNDTIEFSVRDFGKGIEEQYQKRLFEK 532 Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777 + G + G GLGL+I + FI G + + S+ Sbjct: 533 YFQVPTDGNNKSGSGLGLAISKDFIEAESGKIWVESA 569 >gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1129 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 136/254 (53%), Gaps = 12/254 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT ++ L + E +A+ K++F+ ++S+E+R+P+ ++G T+L L+T+ Sbjct: 465 DVTALIQNAVELRKAKEEAERANRAKSAFLANMSHEIRTPMNAVLGMTELALETT----Y 520 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q +Y+E I +S L++++NDILD++ +++G M+++ L ++ + +A + Sbjct: 521 DEDQREYLETIHEASCSLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEA 580 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 H + + V D +L S++ D R+ QI +LSNA+ F+ +G ++ A + + Sbjct: 581 HGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMD 640 Query: 722 SV----KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 SV ++ G + E +F+ F+ +R G GLGLSI + + + GG + + Sbjct: 641 SVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGKLEVQ 700 Query: 776 SSDEGVTTINCRIP 789 S+ + + IP Sbjct: 701 SAPGKGSVFSFTIP 714 >gi|220916157|ref|YP_002491461.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954011|gb|ACL64395.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 413 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 5/233 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + D ++ F+ H ++ELRSP+ I+ +LL+ + + + ++ S+ L Sbjct: 176 LEEVDRLRARFLAHATHELRSPVNAIVALAELLRMACARRSLADVEAKIPVLARSAAELR 235 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 VN++LDL+ ++AG M+++ + L L++EV ++ ++ + ++V +D G + Sbjct: 236 GTVNELLDLSKLEAGRMEVSIAPADLGALVSEVAATV--RLLVGDAPVEVRADAAPGLLL 293 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D ++ +I + +NA F+ GS + A G + +V + G I E +F Sbjct: 294 ETDGPKVRRILLNLGANAAKFTRAGSVRLAGAPDGRGGVLLTVADTGCGIDEADLPRLFV 353 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F + +A R G GLGL+I S L GG VS+ S TT R+P++ Sbjct: 354 PFSQLEDAATRTREGTGLGLAITRSLATLLGGTVSVESRRGAGTTFTVRLPAR 406 >gi|119962003|ref|YP_946601.1| signal transduction histidine kinase [Arthrobacter aurescens TC1] gi|119948862|gb|ABM07773.1| putative signal transduction histidine kinase [Arthrobacter aurescens TC1] Length = 498 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA ++++ FV S+ELR+PLT I G+T+LL+ ++ + + ++S + + + S Sbjct: 265 EARQESETKVRQFVADASHELRTPLTAIRGYTELLRMTENFTEDGRKS--LARVQSQSER 322 Query: 620 LLNLVNDILDLATVDAG----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + LV D+L LA +D G + ++ + +V+ + +E M ++I + D Sbjct: 323 MTTLVEDLLLLARLDEGQPVKVEDVDLTQLVIETVSDE------KVMAPDHIWQLQLPDE 376 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDM 734 + + D +L Q+ + +LSNA + G+TV+ +G + SV +NG IPED Sbjct: 377 PI-TVRGDATQLHQVLANLLSNARKHTDPGTTVVTGVMLSADGSAVVSVTDNGPGIPEDF 435 Query: 735 CKSVFNRFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F+RF ++A R G GLGLSIVES ++ HGG V ++S G T R+P+ Sbjct: 436 QGRIFSRFARADAARSGSEGTSGLGLSIVESIVSAHGGSVEVTSR-PGRTEFALRLPT 492 >gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1095 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 18/239 (7%) Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS 607 ER E N A +A+E K+ F+ ++S+E+R+P+ IIG + L L+T LN+KQ Sbjct: 313 ERKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGLSYLCLQTD----LNNKQH 368 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+ + +S+ LL ++NDILDL+ V+AG +++ + L D+ + + I K E + Sbjct: 369 DYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQDVTDHLTSIIHVKAQEKQL 428 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDF 719 V + + F V D RL QI + NA+ F+S+G ++ + Sbjct: 429 HFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVMLQIVLAEQTEQTEQTARI 488 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F++K+ G+ + + +F F R+ G GLGL I + + GG +S+ S Sbjct: 489 HFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFGGTGLGLVISKQLVETMGGEISVES 547 >gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 936 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 13/262 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F +++ + E AL ++ A+E K F+ +S+E+R+PL ++G +LL ++ Sbjct: 424 LCAFSDISARRQIEAALERARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQ 483 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +++Q Y+ I SS LL L+ D+LD++ ++AG + L S + L EV Q Sbjct: 484 L---DTQQKSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGY 540 Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716 A +++ D +L S + D R+ QI + +LSNA+ F+ G V+ + Sbjct: 541 AAAAQSKGLQLYACFDPQLPDSLIGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVLSRE 600 Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770 G+ + + V + G I D +F F RG G GLGL I NL G Sbjct: 601 GERVCVQWQVSDTGRGIAHDDQAFIFEPFYQT--RGNSHVIAGTGLGLPICLRLTNLMNG 658 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 + + S ++ + +P ++ Sbjct: 659 TLRMVSEPGLGSSFSLTLPLEQ 680 >gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1129 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++NE L+ A+++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 444 KTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670 I S L LV+D+LD + G + +N S + L+ + V + + IRI + Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V SD LG +D QRL Q+ ++ NA+ ++S+G VI + D+ + V + G I Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620 Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + +F + R+G GLGLSI I L GG + +SS TT + + Sbjct: 621 PAEYLEHIFEPLIQAGQDSSNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680 Query: 789 P 789 P Sbjct: 681 P 681 >gi|46908753|ref|YP_015142.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47094035|ref|ZP_00231765.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858] gi|46882025|gb|AAT05319.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str. F2365] gi|47017585|gb|EAL08388.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858] gi|328465185|gb|EGF36453.1| sensor histidine kinase [Listeria monocytogenes 1816] Length = 459 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L+K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L++ ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 D ++ D + L Q++S +L+NA+ F+ +G + + V+++G I Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398 Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 EDM K +F+RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457 >gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS] Length = 1238 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +GD Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|327188568|gb|EGE55778.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 759 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 10/260 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591 A L +V V ER L + E R+ E K+ + VS+E+R+PL+ I+G T Sbjct: 206 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 265 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL ++L +Q Y+ I S L LV D+LD +T++ G +L+ + L LL Sbjct: 266 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 322 Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 V + +A + HE I I +S + D RL Q+ ++ NA+ F+ G V + Sbjct: 323 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 381 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769 + + D G+ + +V ++G + + VF F + G GLGL+I + G Sbjct: 382 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 441 Query: 770 GHVSISSSDEGVTTINCRIP 789 G ++++S + R P Sbjct: 442 GALTVASEKGLGSEFTIRFP 461 >gi|310824674|ref|YP_003957032.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397746|gb|ADO75205.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 378 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561 ++T DDER ++Q + D +++ + PL + + R E L ++ EA Sbjct: 87 VLTGTDDERLAVQAVHQGAQDYLVKGQVTGPL----LVRALRYAIERKRVEEGL-KREEA 141 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 R+ + F+ + ++LR+PL I G LL + G L Q + V IS S+ + Sbjct: 142 QRQTAVFREQFLAILGHDLRNPLQAISGNAGLLL--RYGGLAEPQRKAVNRISISADRMA 199 Query: 622 NLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 ++ND+LD G + + + L+D+L +V + + + N + + +G G + Sbjct: 200 RMINDVLDFTRARLGGGYPVMRARVNLHDVLRQVVEELEVAHAQRNFELSLSGNG-WGEW 258 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739 AD + Q S ++ NA+ +S + + V + RD G+ I V N G+ IPE+ VF Sbjct: 259 DADS--IAQAASNLVGNAVQYSPEDTPVAV-VVRDEGEGIRVEVHNQGTPIPEERLPHVF 315 Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + FV AH R G+GLGL I + HGG + ++S+ Sbjct: 316 DPFVRGAEGAHNKARTGLGLGLYITHEIVRAHGGTLRVTST 356 >gi|256960921|ref|ZP_05565092.1| sensor histidine kinase [Enterococcus faecalis Merz96] gi|256951417|gb|EEU68049.1| sensor histidine kinase [Enterococcus faecalis Merz96] Length = 393 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+ IG+ L++ + S + + Y+ A LL Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSTIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 V+D+ + V + ++ +T + L+ ++ + + N++I+V ++ Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++F+ +LSNA+ + G ++++ + + I +V+N+G +IP+ +F+R Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V + + G GLGL+I +S + LHGG++ + SD+ T+ +P Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383 >gi|167836942|ref|ZP_02463825.1| response regulator/sensor histidine kinase [Burkholderia thailandensis MSMB43] Length = 340 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L+K G L +Q + + Sbjct: 55 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVKE---GLLAPEQQRLL 107 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +RI+ Sbjct: 108 SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRIR 167 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ GS + A D+ D + +V + Sbjct: 168 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTEHGSVSVRVRAADDVDGSVEIVATVVD 227 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D +F FV A RG RR G GLGL+I L GG V+++S + T Sbjct: 228 TGIGIAADELTRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 286 Query: 783 TINCRI 788 T RI Sbjct: 287 TATARI 292 >gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 15/239 (6%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E A + E R+A K+ F+ ++S+E+R+P+ +IG LL + L ++Q Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YV+ I S LL L+N ILD + ++AG ++L+Y +L+ EV + + N Sbjct: 201 LSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF-- 719 + + IS G D RL Q+ ++ NA+ F+ G I A +F Sbjct: 261 LALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSC 320 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK++G IP + +F RF R+ G GLGL+I + L GG V + S Sbjct: 321 YFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379 >gi|86143811|ref|ZP_01062187.1| two-component system sensor histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85829854|gb|EAQ48316.1| two-component system sensor histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 804 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 132/258 (51%), Gaps = 15/258 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++ F + + S + R L E N + + + + +++++RSPL ++GFTDLLK + Sbjct: 284 IMIFKDASRSQQYSRELEESNATAQSLLKSREQLMATITHDMRSPLNTVLGFTDLLKKT- 342 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNE 653 ++++KQ +Y++ + S +L LVND+LD A ++AG + + N ++ + ++ Sbjct: 343 --AVDAKQMRYLDTVQKSGDYILKLVNDLLDFAKLEAGKISVEKVPFNPKKLIEDVIVVS 400 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + Q + T + + I D F++D R+ QI + +++NA F+ +GS + + Sbjct: 401 LPQPLKTGVEVHT----EIPDELDTIFLSDPFRIKQILANLITNAYKFTEEGS-ITVALH 455 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 +D + F + + G IP++ + +F F QR+ G GLGLSI + L G Sbjct: 456 KDGKNLRFKIIDTGCGIPKEKQQLIFKEFSQAEETTQRKYGGFGLGLSISQKLTELLEGK 515 Query: 772 VSISSSDEGVTTINCRIP 789 + + S +T +P Sbjct: 516 LQLKSIPGKGSTFTLIVP 533 >gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 725 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 6/228 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ VS+E+R+PL +IG ++LL L Y + I S+ LL L+ Sbjct: 226 ASQAKSEFLATVSHEIRTPLNGVIGMSELLSEHHL---PDGARHYADTIHDSAQRLLELI 282 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683 NDILD + ++AG + L ++ L++L+N A I + D L + V+D Sbjct: 283 NDILDFSKIEAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWIDPALPTHIVSD 342 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL QI +LSNA+ F+ +G + D+G+ V + G I E +F F Sbjct: 343 PGRLRQILLNLLSNAIKFTERGEVRVSAFVADDGELGIDVVDTGCGIDEQRQAQLFEPFR 402 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + + G + + S + R+P Sbjct: 403 QGDPSTARRFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLP 450 >gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC 27755] gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR ++ + FV +VS++ RSPLT+I G+ + + + Q +Y+ I + L Sbjct: 239 LRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAIADGTIPP--EMQGKYLNIILFETERLT 296 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L D+L L D + L+ L++++ V S + + I I+++ K V Sbjct: 297 DLTKDLLTLNEFDTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFARKHLKVV 356 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740 AD++++ Q+ +L NA+ FS + S + ++ + GD I+ SVK+ G IP + ++ Sbjct: 357 ADKRKIQQVLYNLLDNAIKFSDQDSIITIETT-ERGDKIYTSVKDYGIGIPRNALNKIWE 415 Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 RF S+ RG+ ++G GLGL+IV+ I HG ++++ S+ EGV T Sbjct: 416 RFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENINVVST-EGVGT 459 >gi|118478526|ref|YP_895677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196042701|ref|ZP_03109940.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225865179|ref|YP_002750557.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|229185457|ref|ZP_04312639.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1] gi|118417751|gb|ABK86170.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196026185|gb|EDX64853.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|225790052|gb|ACO30269.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|228598045|gb|EEK55683.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1] Length = 458 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS++G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELEFSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1421 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 130/250 (52%), Gaps = 11/250 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ AERA+ E +A+ K+ F+ ++S+E+R+P+ I+G + ++ S + Sbjct: 682 TLQDITERKAAERAMLIAKEQAEEANISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMA 741 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 K+ ++ I +SS +LL ++NDILD + ++A ++L + L ++L ++K Sbjct: 742 ---PKEKDFLLKIHSSSKMLLGIINDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQ 798 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 E+ + + + V D RL Q+ + +LSNA+ F+ G+ + LK +N Sbjct: 799 SAAEHGLELYFHKKSDVPEIIVGDELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHEN 858 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 I FS+ + G I ++ +F F R+ G GLGL+I + +N GG +S Sbjct: 859 RAIIGFSLTDTGIGISDEDISKLFQPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELS 918 Query: 774 ISS-SDEGVT 782 +SS EG T Sbjct: 919 LSSVKGEGST 928 >gi|255535150|ref|YP_003095521.1| Sensor histidine kinase [Flavobacteriaceae bacterium 3519-10] gi|255341346|gb|ACU07459.1| Sensor histidine kinase [Flavobacteriaceae bacterium 3519-10] Length = 885 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 35/288 (12%) Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------- 565 ++L D V + I LP +L D++ + LTE + LRK Sbjct: 597 KILIDGVTKEDKITLPEVLRILE--ESKDNISMNKQLTEHSHQLRKMSEKLQDANETLLI 654 Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 D K+ F+ V++ELR+P+T I ++LL + K+ ++E I + S L ++ Sbjct: 655 KDRQKDDFLDSVAHELRTPITAIRATSELLMDDEDMPTEIKK-DFLENIISESDRLAEII 713 Query: 625 NDILDLATVDAGIMKLN--YSTIV------LNDLLNEVKQSIATKMHENNIRIKVISDGK 676 NDIL L ++AG LN + IV L LL +Q H ++ + ++ + Sbjct: 714 NDILYLDKLEAGTTPLNLEHGNIVNSYHKALKPLLQLFEQK-----HLHHSEVNLLQEE- 767 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 +FV D +++Q+F IL NA+ F+ + +K +G S+ N G +IP++ + Sbjct: 768 --TFVYDEMKMIQVFQNILGNALKFAGDQGMIQVKFQEKDGRLKVSIFNTGKTIPDEDLE 825 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +F +F + H+ R+ G GLGL+I + +N HGG ++ + + GVT Sbjct: 826 FIFEKFYQSKHQNLRKPVGSGLGLAICKRILNAHGGDIAAVNKEIGVT 873 >gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 782 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 7/243 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609 AER L +K +A A+ K+ F+ ++S+ELR+PL I+GF ++++ G L S K +Y Sbjct: 508 AERYLDQKAQA-ESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLGSEKYREY 566 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I +S LL++++DILD++ ++A + L + + + L + IA + + Sbjct: 567 CRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPARAKGLTL 626 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V +AD + L QI +L NA+ F+ + V ++ R V+++G Sbjct: 627 SVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRRALDAVHIFVEDSGIG 685 Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP+ + + F + SN R +G GLGL+I S LHGG + I S T + Sbjct: 686 IPKAVLPKLGAPFEQVESNFSRSF-KGSGLGLAISRSLTELHGGRLRIRSEVGCGTIVLV 744 Query: 787 RIP 789 R+P Sbjct: 745 RLP 747 >gi|325289012|ref|YP_004265193.1| integral membrane sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964413|gb|ADY55192.1| integral membrane sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 646 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 19/244 (7%) Query: 551 AERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 AE+AL E L+KAD KN F+ +S+ELR+PL +++ L KL + + Sbjct: 251 AEKALQHSEQRALALVEDLKKADYQKNRFLSSLSHELRNPLASMMMSLSLF---KLAAPD 307 Query: 604 SKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S Q +Q +E + L LV+D+L++ + +KLN + LN L+ ++ Sbjct: 308 SPQAAQAMEIFERQTIQLSRLVDDLLEVTRITQNKIKLNTGLVELNSLVQRTVKNYKQMF 367 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI 720 E + ++V + +AD RL+QI +L NA+ F++ G VI+ D I Sbjct: 368 TEKGLSLEVEDYVQPVYVLADSARLIQIIENLLYNALKFTNTGGEVRVIVSKDEDKSAAI 427 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 VK+NG I +++ + +F FV AH G+GLGL+IV+ + LHGG V S Sbjct: 428 IQVKDNGMGIKQELLEDLFLPFVQADLTLAHSSG--GIGLGLAIVKGMVELHGGKVFAKS 485 Query: 777 SDEG 780 G Sbjct: 486 DGLG 489 >gi|323359409|ref|YP_004225805.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] gi|323275780|dbj|BAJ75925.1| signal transduction histidine kinase [Microbacterium testaceum StLB037] Length = 510 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 25/259 (9%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLN-S 604 D V A + ++NE E+ FV S+ELR+PL +I GF++L L+ + + S Sbjct: 253 DRVDASLSARQRNE------ELMRRFVADASHELRTPLASIRGFSELSLRAMRQAHDDES 306 Query: 605 KQ---------SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 +Q Q +E I A S + LV D+L LA +D G +L Y T+ L L E Sbjct: 307 RQRTAMAVETTEQSLERIQAQSIRMTTLVEDLLLLARLDEG-QELVYGTVDLTRLAVEAV 365 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ +I V D D RL Q+ + +L+NA + GS V + R+ Sbjct: 366 GDARPAGPDHVWKIDV--DDHPVELAGDAARLHQVVANLLANARTHTPAGSEVCVSVRRE 423 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 D + V ++G + + +F RF + A R + R G GLGLSI + + H G + Sbjct: 424 GDDAVLRVHDDGPGVDPAVAAQLFERF-ARADRSRDRKTGGTGLGLSIARAIVEAHRGSI 482 Query: 773 SISSSDEGVTTINCRIPSK 791 S+ S+ G TT R+P+K Sbjct: 483 SVRST-PGDTTFEVRLPAK 500 >gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 921 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 19/240 (7%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + R E L K EA A + K+ F+ +S+E+R+P+ ++G T+LL S LN +Q Sbjct: 253 ATRTEELLRAK-EAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDS---GLNHEQR 308 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + E + S LL ++NDILD + +++G ++L L DLL + A + Sbjct: 309 HFAEAVENSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKK-- 366 Query: 668 RIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718 R+++I+D L V D RL QI + +NA+ F+ +G V+ L D Sbjct: 367 RLELIAD--LPPEVRRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTDGYR 424 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 SV++ G IP + +F +F + + Q G GLGL+I + L GG + + S Sbjct: 425 LRISVEDTGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDS 484 >gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC 15579] gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC 15579] Length = 619 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 10/236 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-----KQSQYVEYISASS 617 R+ +++ F+ ++S+EL++PL I LL + +N KQ +Y++ I + Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYE-KDINKDINYEKQDKYLKLIKQNC 414 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+ L+N++LD +D+G +KLN + L+ E+ S+ + I I ++ + Sbjct: 415 YRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEE 474 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCK 736 D ++ +I +LSN++ F++ G + + D+GD+++ VK+ G IP D + Sbjct: 475 KIIAVDPDKIERIILNLLSNSIKFTNLGGNIFVNII-DSGDYVYIHVKDTGVGIPSDKLE 533 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 S+F RF V + + G G+GL +V+SF+ +H G V+I+S T ++P+ Sbjct: 534 SIFQRFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGDVTIASELGKGTEFIIKLPA 589 >gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1128 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 +D D + SF+ R+S++ +EL+ E Q ++T Sbjct: 404 ADRKDEIGRLALSFERMRRSIKEKIELIKSQNQELE-------QNLVT------------ 444 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 + ++NE L+ A+++K+ F+ S+ELR+PL +IG + + + G + + ++ I Sbjct: 445 -IKKQNEELQLANKLKDEFLATTSHELRTPLHGMIGIAEAMISGANGPIGANHKYQLDII 503 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L LV+D+LD + G + + S I L V + + E IRI Sbjct: 504 VNSGQRLAGLVDDLLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRIINQV 563 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L AD QRL Q+ ++ NA+ ++++G V+ A D+ V + G IP Sbjct: 564 LEPLPYVSADPQRLEQVLYNLVGNAIKYTNEGKIVLSATAMDD-HIRVQVVDTGQGIPAQ 622 Query: 734 MCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F V H R+G GLGLSI I L GG + +SS TT + +P Sbjct: 623 QLEHIFEPLVQAGHDSGHYRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLP 680 >gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 663 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L +A +ADE +K+ + VS+ELR+PL I G+ ++L++ G Q Sbjct: 267 RMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L +V D+LD +++ G ++L + + L ++ E + I N + + Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQESVREIGETAEANGLDL 383 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 AD +RL Q+ S +LSNA+ F+ +G + + SV + G Sbjct: 384 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPRGGRIKVSLNPAGARVRLSVADTGQG 443 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 I + +F+ F A +RG+GLGLSIV + LHGG V+ +S G TT+ Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503 Query: 787 RIPS 790 +P+ Sbjct: 504 MLPA 507 >gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 14/251 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+A E E KA++ K+ F+ +S+E+R+P+ ++G LL+ + +LN++Q +Y Sbjct: 403 QQEQAAREDAE---KANQAKSVFLATMSHEIRTPMNGVLGMASLLEET---TLNNEQREY 456 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668 V I S LL++++D+LD + +++G + L+ L + EV + K+ + Sbjct: 457 VSTIKNSGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDL 516 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG-DFIFSV 723 + I +AD RL Q+ ++ NA+ F+SKG +L D+ + F V Sbjct: 517 VYQIGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSLELAFEV 576 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G IP D +F F RR G GLGL+I E ++L G +++ S + Sbjct: 577 KDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQLDLG 636 Query: 782 TTINCRIPSKE 792 TT I ++E Sbjct: 637 TTFRFSIKAEE 647 >gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 935 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 14/246 (5%) Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L NE LRK A ++K+ F+ ++S+E+R+P+ I+GF +LL + N ++ Sbjct: 315 LKNSNEMLRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDE---TNLEKM 371 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y++ I S LL+L+ND+LDL+ ++A L S L+ E+ ++ + + Sbjct: 372 KYLKTIYRSGEHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSKGL 431 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 ++ +V D R+ Q+ + ++SN + F+ KG +L D I++V++ Sbjct: 432 HFANSITERVPEYVDGDEFRVRQVLTNLVSNGLKFTDKGYVSVL-LDYDGHHLIYTVQDT 490 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 GS + + +F F+ R+ G GLGL+I + + L GG + S + + Sbjct: 491 GSGVSREEIDKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKV 550 Query: 785 NCRIPS 790 RIPS Sbjct: 551 TVRIPS 556 >gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] Length = 2359 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 133/259 (51%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRKADEI-----------------KNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA E K+ F+ ++S++LR+P+T +IG ++LL Sbjct: 1852 KRALAQAREAEQKAKEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELL 1911 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + SL+ +Q YVE I + LL L+NDILD + ++AG MK+ + L + EV Sbjct: 1912 KQT---SLDRQQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVTTVPLNLRQTIAEV 1968 Query: 655 KQSIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711 +++ + + I+ D V D RL QIF +LSN+ F+ KGS TV K Sbjct: 1969 VRALRYTHRDRGLETIEDFDDIDPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2028 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A ++ + I +V + G I D +F F S A R G GLGLSI ++ I Sbjct: 2029 VAEESENTIRVTCTVADTGIGISNDHMARLFRPF-SQADSSTARSYGGSGLGLSICKAII 2087 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + SD GV T Sbjct: 2088 EDVLGGKIWL-HSDVGVGT 2105 >gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4] gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4] Length = 2062 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E A K+ F+ ++S+E+R+P+ IIG TDL ++L ++Q +Y+ + +S+ Sbjct: 1338 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLSMVQSSAGS 1394 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 LL ++NDILD + ++AG ++L+ + L L + ++++ + H+ I + I+ Sbjct: 1395 LLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPD 1454 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPED 733 S + D RL QI + ++ NA+ F+S+G V ++ + G+ + FSV + G IP+D Sbjct: 1455 SLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPKD 1514 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 +F F RR G GLGL+I + L G +S +S S +G T Sbjct: 1515 KLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGST 1566 >gi|308049363|ref|YP_003912929.1| integral membrane sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307631553|gb|ADN75855.1| integral membrane sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 788 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 131/262 (50%), Gaps = 26/262 (9%) Query: 539 MLTFVNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 M+ N+ DS+R +R +KN+AL A++ K+ F+ ++S+E+R+PL I GF LL Sbjct: 281 MMDNENLIDSLREQR---DKNQALTARANHANQAKSLFLANMSHEIRTPLNGISGFVSLL 337 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K ++ L+ +Q +YV + + + L ++ DILD + +++G M L + I + LL++V Sbjct: 338 KRTR---LSQEQREYVNHCANTVNNLTGIIGDILDFSKIESGEMVLENAVIDVLPLLHDV 394 Query: 655 KQSIATK--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + H N+IR + + + + D RL Q+ +LSNA+ F+ G + A Sbjct: 395 YSMVQNQNLAHHNDIRFDIGAMPQ--TLYGDEVRLKQVLVNLLSNAIKFTQYGQIRLTMA 452 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFIN 766 D +V + G MC S + + G GLG+ I+E N Sbjct: 453 VPDGHTLEITVSDTGIG----MCPSKLEHIRKPFEQADLSITKEFGGTGLGIPIIERIAN 508 Query: 767 LHGGHVSISSSDEGVTTINCRI 788 GG + I S++ TT CR+ Sbjct: 509 HMGGSLEIESAEGQGTT--CRV 528 >gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 1068 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 14/238 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E EK A +A K+ F+ ++S+E+R+PL IIGFT+LLK S L+ ++ ++V+ Sbjct: 372 ENIAKEKKNA-EEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNS---DLDEEKREFVD 427 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS LL ++N+ILDL+ V++ ++++ S D + K E NI++ + Sbjct: 428 VIEKSSENLLAIINNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQLSL 487 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVK 724 D L +++ D ++ ++ ++SNA+ F+ + ++ R D +FSV+ Sbjct: 488 YMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLFSVR 547 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 ++G I ++ + +F+ F R+ G GLGL+I +I L GG + + S+EG Sbjct: 548 DSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDV-ESEEG 604 >gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 587 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 23/243 (9%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ F+ VS+ELR+PL I+G++ LL KL S ++Q+ ++ I ++ + L+ Sbjct: 166 NRMKDEFIAVVSHELRTPLNAILGWSQLLIGGKLSSERTQQA--IQTIERNARMQAQLIG 223 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684 DIL++ + G + L+ ++ LNDLL + +S+ +R++ D L +V AD Sbjct: 224 DILEMTKLTQGKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLD-PLPRWVNADP 282 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILK------AARDN-------GDFI-FSVKNNGSSI 730 RL QIF +L+NA+ F+ G + +K AA + F+ S+ + G I Sbjct: 283 VRLRQIFWNLLTNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGI 342 Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 + VF+RF +A R Q G+GLGL+IV + LH G + + S G TT Sbjct: 343 SPEFLPHVFDRFRQADGSATRAQ-GGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTL 401 Query: 787 RIP 789 +P Sbjct: 402 HLP 404 >gi|323487406|ref|ZP_08092703.1| hypothetical protein HMPREF9474_04454 [Clostridium symbiosum WAL-14163] gi|323399263|gb|EGA91664.1| hypothetical protein HMPREF9474_04454 [Clostridium symbiosum WAL-14163] Length = 450 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS---- 607 RAL + +RK +N FV S+ELRSPL I L++ G N Q+ Sbjct: 198 RALQPARDGIRK----QNEFVAAASHELRSPLAVIRSSLSALESELPGETGNQNQTVTLR 253 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Q ++ + LV D+L LA+ DAG +L+Y+ + LL E ++ E NI Sbjct: 254 QLIKNSDRECRRMARLVGDMLLLASSDAGNWELHYTQTEPDTLLIEAYEAFLPLCREKNI 313 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------- 718 + + + +ADRQRL Q+ + +L NA+ ++ G V LK + G Sbjct: 314 NLILELPKEPFPPLLADRQRLEQVITILLDNAISYTPAGKEVRLKMYKKEGSRRISAGYF 373 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G +P++M + +F+RF +A R ++ GLGLSI + +HGG +++ Sbjct: 374 RTVIEVADTGKGVPDEMKQRIFDRFYRGDASRKDKKHFGLGLSIAKELTEMHGGTLAVHD 433 Query: 777 SDEG 780 + G Sbjct: 434 NPGG 437 >gi|313124625|ref|YP_004034884.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281188|gb|ADQ61907.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 402 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623 ++ K+ + +VS+++R+PLT+IIG+ LLK G++ S++ +Y+ + + +L Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ND+ + T+ + KLN + I + ++ +V + + I V + AD Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 ++L+++++ ++SNA+ +++ S + L A N + + V+NNG IP+D K +F+RF Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V ++ + G GLGLSIV+ + LHGG + S+ + Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGAVELHGGTIRCESNKD 379 >gi|300857303|ref|YP_003782287.1| putative sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300437418|gb|ADK17185.1| predicted sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 471 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 3/211 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 ++L K ++ + F+ +VS+E+RSP+T+I GF + + + KQ+ Y+ + Sbjct: 241 DSLEKVEKHRREFISNVSHEIRSPITSIKGFIGGMIDGVIPA--EKQNYYLSVTYSEIQR 298 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LDL+ ++AG KL + +N+++ TK++ +++ V+ + Sbjct: 299 LTRLVNDLLDLSAIEAGEFKLRIEEVDINEIIRLCVIKFETKINNKKLKVDVLLEDNKLY 358 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD+ R+ Q+ + ++ NA+ +S G + + + SV N+GS IPE K ++ Sbjct: 359 VAADKDRITQVVTNLVDNAIKYSDIGGNIKVSTKVKGEKAVVSVYNDGSGIPESDLKHIW 418 Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 +RF + R + GLGLSIV S + G Sbjct: 419 DRFYKVDKSRTSKVSTGLGLSIVRSILTQLG 449 >gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus denitrificans BC] gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus denitrificans BC] Length = 585 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----Q 608 R L + A K+ F+ +S+ELR+PLT+I GF +L++ L +QS Q Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQ 390 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENN 666 E+++A L+ +ILDLA V+AG M + + L L++EV + ++ + Sbjct: 391 GAEHLNA-------LLTEILDLAKVEAGSMPTHPEPVALPVLVHEVTELFRVSAVVKSLQ 443 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725 + +++ + + V DR RL QI + +LSNA+ F+++G + ++ D +F V + Sbjct: 444 LEARLLPEAE-QPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTD 502 Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777 G I ++ + +F +F R Q G GLGLS+ + L GG +++ SS Sbjct: 503 TGPGIAPELQEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSS 556 >gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194] gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194] Length = 459 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L+K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L++ ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 D ++ D + L Q++S +L+NA+ F+ +G + + V+++G I Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398 Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 EDM K +F+RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457 >gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] Length = 2102 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 10/249 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +T+ T N+ + R E L A A + K+ F+ +S++LR+PL I+G+ +LK Sbjct: 1606 RTIGTMTNIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKK 1665 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 K ++ Q ++ I S LL L+NDIL L+ +++G ++L + D + V Sbjct: 1666 EK--NITPPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVS 1723 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 NI + S +L FV D +R+ QI +LSNA+ F+ +G Sbjct: 1724 ITRVWAENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGGVTFRITHTP 1783 Query: 716 ------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768 N F+F V++ G+ IP+D +F F R Q G GLGL+I + L Sbjct: 1784 HPTKVLNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSRHQAEGTGLGLAICNRLVKLM 1843 Query: 769 GGHVSISSS 777 G + + S+ Sbjct: 1844 DGSIQVEST 1852 >gi|33341112|gb|AAQ15122.1|AF350321_1 putative ethylene receptor ETR1 [Lactuca sativa] Length = 737 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 32/263 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ + Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ L EV I Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLELDTTTFNLHALFKEVLNLIR 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709 + + + L + V D +RL+QI I+ NA+ FS +GS I Sbjct: 432 PVASVKRLFVTLSLSSDLPEYAVGDEKRLMQIILNIIGNAVKFSKEGSISISAIMAKPDS 491 Query: 710 LKAAR---------DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757 L+ R DN F+ VK+ G I + +F +F + R G GLG Sbjct: 492 LRDPRAPDFFPLLSDNNFFLRVQVKDTGMGISQQDMPKLFTKFAESQSPATRNPGGSGLG 551 Query: 758 LSIVESFINLHGGHVSISSSDEG 780 L+I + F+NL G++ I S G Sbjct: 552 LAICKRFVNLMEGNIWIESEGLG 574 >gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 142/290 (48%), Gaps = 14/290 (4%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 RKS + + + L + I + AQ M + + ++ AL + E A+ K+ Sbjct: 476 RKSFELWKQTVKHKSLPWQIFEIEVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKS 535 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 F+ +S+ELR+PL I+GFT +L ++ SL+ + + ++ IS S LL+L+ND+L++ Sbjct: 536 QFLAKMSHELRTPLNAILGFTQIL--TRNSSLSQEDQENLDIISRSGEHLLSLINDVLEM 593 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689 + ++AG LN + L L+ +++ A K + I + ++ +V D +L Q Sbjct: 594 SKIEAGKPTLNETYFDLYRLIYSIQEMFALKAADKGINLITEFGVEVNKYVFGDEGKLKQ 653 Query: 690 IFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI--FSVKNNGSSIPEDMCKSVF 739 I ++ NA+ F+ G I A NG + V++ G+ I + + +F Sbjct: 654 ILINLIGNAIKFTVVGHVAIRVSCPPNYAPLAVTNGKVLIELEVEDTGAGIALEDQELIF 713 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 F+ S R +G GLGL+I F L GG +++ S TT CR+ Sbjct: 714 EAFLQSKGGRQFMQGTGLGLAISRQFARLMGGDITVKSILGEGTTFTCRV 763 >gi|222084676|ref|YP_002543205.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221722124|gb|ACM25280.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 767 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 16/249 (6%) Query: 553 RALTEKNEALR-------KAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 R +TE+ +A R KA+ K+ + VS+E+R+PL+ I+G LL + L Sbjct: 229 RDVTEERQAARLREDARLKAEYNSAAKSRLLATVSHEIRTPLSGILGMNHLLAQT---PL 285 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q+ Y+ I S L+ LV D+LD +T++ +L +L LL V + +A + Sbjct: 286 TLEQANYLTGIRQSGNALVQLVEDLLDFSTIEVNRFQLRPRAEMLRPLLEGVVEMLAHRA 345 Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 HE I I + + D RL Q+ ++ NA+ F+ G V+++A D G+ + Sbjct: 346 HEKGIEIAATVAADVPETMEFDPARLRQVLFNVIGNAVKFTQTGG-VLIRAGLDGGNLLI 404 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 SV+++G + E+ +F F + + G GLGL+I + GG +S++S Sbjct: 405 SVRDSGPGMTEEEQARIFGEFEQAGNVLDKSAGTGLGLAISARILREFGGALSVASERGN 464 Query: 781 VTTINCRIP 789 + R P Sbjct: 465 GSEFTIRFP 473 >gi|146280448|ref|YP_001170601.1| two-component sensor [Pseudomonas stutzeri A1501] gi|145568653|gb|ABP77759.1| two-component sensor [Pseudomonas stutzeri A1501] Length = 968 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 4/234 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++K F+ VS+ELR+PLT I G +L G L+ + + +S L+ Sbjct: 456 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVR 515 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD+ ++AG + N + L+ + I + + ++ + +L S A Sbjct: 516 LINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEA 575 Query: 683 --DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D R Q+ + +LSNA+ S G V + R V++ G IPE +F Sbjct: 576 TLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGERLEIGVQDRGPGIPEAFRSRIFE 635 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF ++ QR G GLGL+I S + G + + T ++P +E Sbjct: 636 RFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 689 >gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 764 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T +V E L E A+ K++F+ ++S+E+R+P+ ++G +LL + SL Sbjct: 190 LDITSTVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---SL 246 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q Y I S LL ++ND+LD + ++A M L+ L ++E+ + Sbjct: 247 SEEQKLYANTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTA 306 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + + + V D L + FV DR R+ Q+ + + NA+ F+++G + N D Sbjct: 307 RDKGLTMLVDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVTGISNPDEGT 366 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +++ G IP D VF F V + + G GLGL+I + I L G + + Sbjct: 367 CSVHCLIEDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWV 426 Query: 775 SSSDEGVTTINCRIP 789 S + + RIP Sbjct: 427 ESDEGEGSCFGFRIP 441 >gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG L S+ + Y+E I+ S+ LL L+NDIL Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQPPP-PPRLHDYLEKITGSAATLLTLINDIL 472 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687 D + ++AG + ++ L+++LN++ +A + E + + D G V D RL Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532 Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFV 743 Q+ + SNA+ F+ +G T+ + A D + +V++ G + + + +F F Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFT 592 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 R+ G GLGLSI + L GG + + S+ +T + Sbjct: 593 QADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFS 636 >gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1225 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KT++ + Q Y E I + Sbjct: 844 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 899 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L++ + L+ EV+ +A E +R + G Sbjct: 900 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 958 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 959 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 1018 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF N + R G GLGL+I + GGH+ + S Sbjct: 1019 QKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1064 >gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 467 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +I+ F + S+EL++P+T++ G+ +LL++ + K ++ I + + +L+ND Sbjct: 240 QIRQEFFSNASHELKTPITSVQGYAELLESGIIQDEEQKMD-FIRRIKKEAVNMNHLIND 298 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 IL ++ ++A ++ + + L+ LL+++ +S+ + + I V D K A+ Q+ Sbjct: 299 ILMISRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHV--DCKPLCIYANGQQ 356 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 + ++F ++SNA+ ++ G V + +N + I VK+NG IP++ +F RF V Sbjct: 357 MKELFGNLISNAIKYNKPGGQVWVTVTEENRNVIIRVKDNGMGIPKESLGRIFERFYRVD 416 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 ++ G GLGLSIV+ +N + G +++ S + T +IP +E Sbjct: 417 KGRSKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIPIQE 464 >gi|294645464|ref|ZP_06723165.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639165|gb|EFF57482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 911 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 348 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 407 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 408 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 465 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 466 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 525 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 526 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 583 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 584 TVASEPAQYTEFKVTLPA 601 >gi|218507628|ref|ZP_03505506.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Brasil 5] Length = 404 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 10/247 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591 A L +V V ER L + E R+ E K+ + VS+E+R+PL+ I+G T Sbjct: 162 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 221 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL ++L +Q Y+ I S L LV D+LD +T++ G +L+ + L LL Sbjct: 222 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 278 Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 V + +A + HE I I +S + D RL Q+ ++ NA+ F+ G V + Sbjct: 279 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 337 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769 + + D G+ + +V ++G + + VF F + G GLGL+I + G Sbjct: 338 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 397 Query: 770 GHVSISS 776 G ++++S Sbjct: 398 GALTVAS 404 >gi|170698659|ref|ZP_02889726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170136438|gb|EDT04699.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 663 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 9/244 (3%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L +A +ADE +K+ + VS+ELR+PL I G+ ++L++ G Q Sbjct: 267 RTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L +V D+LD +++ G M+L + + L ++ E + + N + + Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETAEANGLEL 383 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 AD RL Q+ + +LSNA+ F+ G + + SV + G Sbjct: 384 STECAMPSCVIAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNPAGARVRLSVADTGQG 443 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 I + +F+ F A +RG+GLGLSIV + LHGG V+ +S G TT+ Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503 Query: 787 RIPS 790 +P+ Sbjct: 504 MLPA 507 >gi|171320663|ref|ZP_02909680.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171094093|gb|EDT39184.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 662 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 9/244 (3%) Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L +A +ADE +K+ + VS+ELR+PL I G+ +L++ G Q Sbjct: 266 RTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVGVLRS---GEGQGFAHQA 322 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L +V D+LD +++ G ++L + + L ++ E + + N + + Sbjct: 323 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVRELGETPEANGLEL 382 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 AD +RL Q+ S +LSNA+ F+ G V + SV + G Sbjct: 383 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRVKVSLNPAGARVRLSVADTGQG 442 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 I + +F+ F A +RG+GLGLSIV + LHGG V+ +S G TT+ Sbjct: 443 ISAERLPHLFDTFSRPEGAAALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 502 Query: 787 RIPS 790 +P+ Sbjct: 503 MLPA 506 >gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] Length = 914 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 18/246 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA +E +E K+ F+ +S+E+R+PL ++G LL+ + L + Q Y+ Sbjct: 399 AERAASE--------NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQQFYL 447 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + IS+S L+ ++NDILD A + +G + L L L++E + + E + + Sbjct: 448 DTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLH 507 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 V + G D RL QI +LSNA+ F+ G V+ + R D +F V + Sbjct: 508 VGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFCVSD 567 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G + +++ +F F RR G GLGL+I + + + GH+ + S+ + Sbjct: 568 SGIGMRQEVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGRGSR 627 Query: 784 INCRIP 789 IP Sbjct: 628 FCFEIP 633 >gi|84496579|ref|ZP_00995433.1| two-component sensor protein [Janibacter sp. HTCC2649] gi|84383347|gb|EAP99228.1| two-component sensor protein [Janibacter sp. HTCC2649] Length = 272 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 10/233 (4%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ALR+AD++ +S+E+R+PL I G DLL G L + Q+++V+ IS S+ + Sbjct: 44 ALRRADQVSV-----LSHEVRTPLALIKGSADLLAEETPGPLTTTQAKFVDTISGSAEHV 98 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + L D+L A ++AG+ +++ + L L V + + H I + + G Sbjct: 99 IALAEDLLAHARIEAGLFEVHLRQVELRAYLRTVVRELRQVHHHRAIALD--APGPPTRV 156 Query: 681 VADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D Q + Q+ S ++ NA+ S + V+++ +G+ I ++ + G + E +F Sbjct: 157 YLDPQLIHQLVSNLVGNALRHDDSPANAVVVRGLTADGNVIIAISDQGRGMSEAERSRLF 216 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF S+A G+ G GLGL I LHGG + + + + TT+ P+ E Sbjct: 217 ARFSSSAPVGE--GTGLGLYISSHIAELHGGRILVDTIAQHGTTMLVTFPAGE 267 >gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1204 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 14/228 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ +IG ++LL + LG +Q +Y + I S+ LL ++NDILD++ Sbjct: 824 FLANMSHEIRTPMNGVIGMSNLLVDTPLG---PEQQEYAQAIRHSAEALLAIINDILDVS 880 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690 ++AG ++L + L+ L+ + + +R+K +S + + D R+ Q+ Sbjct: 881 KLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQV 940 Query: 691 FSKILSNAMDFSSKGSTVILKA------ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF 742 ++ NA+ F+ G + A A D+G V + G +P + + +F F Sbjct: 941 LLNLIGNAVKFTEHGGVFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQPF 1000 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 RR G GLGL+I + L GG + + S + G + C I Sbjct: 1001 TQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVI 1048 >gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3] gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 937 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 14/234 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K AL +A IK+ F+ ++S+ELR+PL +IGF LLKT L+S Q Y+ I S Sbjct: 292 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYINTIEKS 346 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 +T LL ++NDILD + ++AG M L L ++L++ ++ E +I + V I Sbjct: 347 ATTLLGIINDILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVDIESD 406 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIP 731 D R+ QI + ++ NA+ F+ +GS + L+ N + + V + G I Sbjct: 407 VPEDLSGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTESNNEQVHLRCEVTDTGIGID 466 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + + +F F RR G GLGL I + +N GG + IS D+G T Sbjct: 467 DSQKEVLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGST 520 >gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] Length = 701 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T R L E + A++ K+ F+ +S+E+R+PL ++G L+++ L Sbjct: 302 TAKDITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLS 358 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN+KQ+ ++ + S+ +LL ++NDILDL+ +++G +L S I + + + V +A Sbjct: 359 GLNNKQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAP 418 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718 + +NN++ + I D D+ R+ Q+ ++ NA+ F+S GS V+ + DN + Sbjct: 419 QATKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVARKVDDNIE 478 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +V + G I +D ++FN F RR G GLGL+I + I G +S+ S Sbjct: 479 --IAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLES 536 >gi|229591552|ref|YP_002873671.1| two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229363418|emb|CAY50597.1| two-component system sensor kinase [Pseudomonas fluorescens SBW25] Length = 461 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 20/239 (8%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEY 612 E+NE +R+ F+ VS+ELR+PL+ + G D ++T GS+ S Q + Sbjct: 234 ERNEQMRR------EFMADVSHELRTPLSVLRGELEAIEDGVRTLDQGSMKSLQGEV--- 284 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 ++L LV+D+ DL+ D G + S L LL +M+ ++RI++ Sbjct: 285 -----SMLSKLVDDLYDLSLADVGALTYRKSACALEPLLRASVSMFEERMNARHLRIELD 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 +AD RL Q+FS +L NA+ ++ V ++A D D + ++G + Sbjct: 340 LPAPPVELLADAGRLQQLFSNLLENAVRYTDPNGLVRIRAVLDRADVCIDILDSGPGVST 399 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF R G GLGL+I S HGG +S + S G ++ R+P Sbjct: 400 EQLPRLFERFYRGESSRNRASGGAGLGLAICHSIALAHGGSLSAAHSPLGGLWLSLRLP 458 >gi|228908985|ref|ZP_04072815.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL 200] gi|228953539|ref|ZP_04115582.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229080447|ref|ZP_04212968.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2] gi|228702749|gb|EEL55214.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2] gi|228806123|gb|EEM52699.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228850707|gb|EEM95531.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL 200] Length = 448 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + +L +L LA++D L L + +V + K E +I ++ + D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK 337 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ + Sbjct: 338 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRI 394 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 395 FDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447 >gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] Length = 1316 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 28/250 (11%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ ++S+E+R+P+ IIG T LL ++L +Q +Y + AS LL ++ Sbjct: 784 ANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL---TDEQRRYARIVQASGESLLRII 840 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682 N+ILD + ++AG + L L D + + +A + HE I + D LG Sbjct: 841 NEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDPDVPLG-LRG 899 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D RL QI + + NA+ F+S G I D FSVK+ G I + + Sbjct: 900 DSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSVKDTGIGIQREKLGMI 959 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS----------------SDEG 780 FN+F R G GLGL+I + + GG + + S D+G Sbjct: 960 FNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEGSNFWFTVHMEKQDQG 1019 Query: 781 VTTINCRIPS 790 NC P Sbjct: 1020 KGKENCPSPG 1029 >gi|90407447|ref|ZP_01215631.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3] gi|90311478|gb|EAS39579.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3] Length = 751 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 11/245 (4%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L + LN++Q ++ Sbjct: 238 RDITERKIHQESLEKASRDKTTFIATISHELRTPLNGIVGLSRMLLDEQ---LNAEQHKH 294 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+DL +D + L I + D + +++ + + + + Sbjct: 295 LKTIHMSAITLGNIFNDIVDLDKLDRRRLNLVCDQIDMFDFVGDLESLAFIQTEQKGLVL 354 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724 +G L ++ AD RL Q+ ++SNA+ F+ G T+ A R N F V+ Sbjct: 355 NFEQEGMLPDYIEADDTRLRQVLWNLISNAVKFTKTGHITIRCFAKRQNAQHATLCFEVE 414 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 ++G IP +F+ + G G+GL++ + ++ GG +S+ S+ +T Sbjct: 415 DSGIGIPAQQLDKIFSMYYQVQGDQHATGTGIGLAVSQQIVDAMGGKLSVKSTFGKGSTF 474 Query: 785 NCRIP 789 +P Sbjct: 475 TLSLP 479 >gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 449 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 128/257 (49%), Gaps = 16/257 (6%) Query: 544 NVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++++S R + L EA+R+A E+K+ + S+E R+PLT I +LL+ Sbjct: 191 DISESKRLQAKLQWAEEAMRQALAKEREFSELKSRLLTTASHEFRNPLTTIHSSAELLEH 250 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLN 652 + + +Q ++ I S + L+ND+L L + G ++ N + + L DLL Sbjct: 251 YRHLWSDERQQIHLRRIQTSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLVEFCRDLLE 310 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 E++QS ++ I S+ + S D + L QI + + SN + +S GSTV Sbjct: 311 ELEQSDRSQH-----AIVFSSECQCPSANLDAKLLRQILTNLFSNCLKYSPIGSTVKFSV 365 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 N IF +++G IP + +F F ++ G G+GLG+SIV+ ++LHGG + Sbjct: 366 TTANERAIFQTQDSGIGIPPADIEHIFEPFHRASNTGNIPGMGLGMSIVKQGVDLHGGEI 425 Query: 773 SISSSDEGVTTINCRIP 789 + S+ + TT +P Sbjct: 426 IVESAIDAGTTFTVILP 442 >gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 970 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 8/219 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ + +K+ FV VS+ELR+PLT+I G L+ +G L S+ Q V+ +S L Sbjct: 481 KRVELMKSQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPSQARQLVDIAYKNSQRLGY 540 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK---MHENNIRIKVISDGKLGS 679 L+ND+LD+ + AG M+ + ++L +L+ V+Q++ + N+ ++ Sbjct: 541 LINDLLDMEKIAAGKMRFD---MILQELMPIVEQAMEANEAYGRQFNVTFALVERDDSML 597 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D QRL+Q+ S +LSNA FS+ V + N V++ G I ++ +F Sbjct: 598 VRVDAQRLMQVLSNLLSNAAKFSASAERVEIAVMAQNNQVRVEVRDQGPGISPELQARLF 657 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F ++ Q+ G GLGL+I + + GG + + S Sbjct: 658 TKFTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHS 696 >gi|118443927|ref|YP_878728.1| sensory transduction histidine kinase [Clostridium novyi NT] gi|118134383|gb|ABK61427.1| sensory transduction histidine kinase [Clostridium novyi NT] Length = 1666 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 131/244 (53%), Gaps = 12/244 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYIS 614 NE++ K +E++ F ++S+ELR+PL I LL+ L + K +Y+ + Sbjct: 1398 NESI-KYEEMRTEFFANISHELRTPLNVIFSGYQMLNVLLENEDLEN-KEKVDKYMGTVK 1455 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L+ L+N+++D+ +D+G KLN + + +++ + S+A + I + + Sbjct: 1456 QNCYRLVRLINNLIDITKIDSGFFKLNMINVNIVNIVETITLSVAQYIESKGINLIFDTF 1515 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + + D ++ +I +LSNA+ F++KG + + ++ + + SVK++G IP++ Sbjct: 1516 IEEKTMACDVDKIERIILNLLSNAVKFTNKGGNIFVTMKEEDNNIVISVKDDGIGIPKEK 1575 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS----DEGVTTINCRI 788 +F+RF V + R G G+GL++V+S + LH G++++ S E + + C++ Sbjct: 1576 QSIIFDRFIQVDKSLSRNREGSGIGLALVKSIVELHDGNITLKSKLGRGSEFIIKLPCKV 1635 Query: 789 PSKE 792 K+ Sbjct: 1636 LEKQ 1639 >gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1194 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KT++ + Q Y E I + Sbjct: 813 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 868 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L++ + L+ EV+ +A E +R + G Sbjct: 869 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 927 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 928 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 987 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF N + R G GLGL+I + GGH+ + S Sbjct: 988 QKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033 >gi|194432448|ref|ZP_03064735.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|194419335|gb|EDX35417.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|332095919|gb|EGJ00926.1| TMAO reductase sytem sensor TorS [Shigella dysenteriae 155-74] Length = 904 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ + IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGHPIRLATAIADDVPSAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|327478665|gb|AEA81975.1| two-component sensor [Pseudomonas stutzeri DSM 4166] Length = 958 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 4/234 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++K F+ VS+ELR+PLT I G +L G L+ + + +S L+ Sbjct: 446 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVR 505 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILD+ ++AG + N + L+ + I + + ++ + +L S A Sbjct: 506 LINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEA 565 Query: 683 --DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D R Q+ + +LSNA+ S G V + R V++ G IPE +F Sbjct: 566 TLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGERLEIGVQDRGPGIPEAFRSRIFE 625 Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF ++ QR G GLGL+I S + G + + T ++P +E Sbjct: 626 RFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 679 >gi|301301239|ref|ZP_07207394.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851115|gb|EFK78844.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 487 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 128/243 (52%), Gaps = 7/243 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E NE +++ +E + F ++E+R+PLT I G + L + + ++S +E Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVN+ LD + +G ++L+ + + +LN + + + K + + +V Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFEVY 366 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + KL + AD RL+QI I NA+ F+ G + + A + N + I + +NG + E Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424 Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++++ R+ + + + G GLGLSIV + LH G V++ S + TT R P Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484 Query: 790 SKE 792 +K+ Sbjct: 485 NKK 487 >gi|298251062|ref|ZP_06974866.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549066|gb|EFH82933.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1095 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 15/237 (6%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K++F+ S+ELR+PLT + ++TS L KQ +S+ T Sbjct: 867 NSARQELEQRKDAFISMASHELRNPLTAL-----KMQTSLLHRQLVKQGLQAPALSSMQT 921 Query: 619 IL---LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + LV D+LD++ + AG ++ + L+ LL E IA M + ++ G Sbjct: 922 QINKITRLVEDLLDVSKIQAGRLEYQQEIVDLDALLRE----IADTMLHTHPSHTILLHG 977 Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +G S + DR RL Q+F+ +LSNA+ +S TV ++ + V+++G IP + Sbjct: 978 TVGTSLMGDRDRLGQVFTNLLSNAIKYSPGAETVEMELSASEEAVTILVRDHGLGIPREQ 1037 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V++ + G+G+GL IV + HGG + + S +T +P Sbjct: 1038 RDKIFDRFYRVTDPKQKAIPGLGMGLYIVAEIVKHHGGTIMVESEMGKGSTFQVTLP 1094 >gi|225570046|ref|ZP_03779071.1| hypothetical protein CLOHYLEM_06142 [Clostridium hylemonae DSM 15053] gi|225161516|gb|EEG74135.1| hypothetical protein CLOHYLEM_06142 [Clostridium hylemonae DSM 15053] Length = 509 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 114/215 (53%), Gaps = 3/215 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E +++ +K + +VS++L++PLT++IG+ DLLK +L + + YV+ ++ Sbjct: 282 EKQMQSERMKIDLITNVSHDLKTPLTSMIGYIDLLKKERL---SDEARDYVDVLALKQEQ 338 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N++ DI DL+ +G + L + + LL + + + ++ + I+ DG + Sbjct: 339 LKNMIQDIFDLSKSTSGEVNLELEELDMKKLLEQTLGDMEDAVAKSGMVIREKVDGADLN 398 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 V D ++L ++ I+SNA+ +S KG+ + ++A R++ SVKN S + + + Sbjct: 399 IVGDGKKLYRVLQNIISNALKYSLKGTRIYIEAGREDSQIYVSVKNTASYEMDFSPEEIM 458 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 RF G GLGL+I ESF GG +++ Sbjct: 459 ERFSRGDKSRNTEGHGLGLAIAESFTKNMGGTMTV 493 >gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] Length = 833 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + +A A+ K+ F+ ++S+E+R+P+ +IG +LL + L+ Q + I Sbjct: 286 LAQARQAAETANHAKSRFLANMSHEIRTPMIGVIGVAELLSGTP---LSDHQRELAHMIH 342 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673 +S LL ++NDILD + ++AG + + L D++ E IA + + I I Sbjct: 343 SSGESLLKVLNDILDFSKIEAGRLVVERVPFNLVDVVEEPLSLIAKNAQDKKVELICRIQ 402 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSS 729 G S + D RL QI +L NA+ F+S+G + RD + V++ G Sbjct: 403 PGTPVSLLGDPARLRQIVFNLLGNAVKFTSEGEISVRIGCRDENCASASIFLEVRDTGIG 462 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I + +++F+ F S A R G GLGL+IV ++L GH+ + S + C Sbjct: 463 IDREAQQAIFDAF-SQADSSTTRHYGGTGLGLAIVRQLLDLMRGHIHLESELGQGSVFTC 521 Query: 787 RI 788 I Sbjct: 522 TI 523 >gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel] gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel] Length = 477 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L E E + + K+ F+ +VS+ELR+PL +IIGF++++K+ LG + NS +Y+ I Sbjct: 228 LKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDI 287 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672 +S LL+L+NDILD + +A + + + L +++ + + + + + KV+ Sbjct: 288 HSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVL 347 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730 K+ VAD +R+ Q+ +LSN+M F+ + TV +++ ++ I + + G I Sbjct: 348 PSDKV-VMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406 Query: 731 P-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +D+ K SVF + V + H + G GLGL + + + L G I S T I Sbjct: 407 AQQDLYKVMSVFGQ-VDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLT 465 Query: 788 IPSKE 792 P E Sbjct: 466 FPYTE 470 >gi|206969170|ref|ZP_03230125.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206736211|gb|EDZ53369.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 458 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 457 >gi|117925659|ref|YP_866276.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609415|gb|ABK44870.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 16/231 (6%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T +++AL +K+ F+ +S+E+ +P+ ++G +LL +L+ +Q +YVE Sbjct: 267 TARDQALESV-RLKSEFLATMSHEISTPMNGVVGMLELLDEK---TLSPQQQEYVEIAKH 322 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL--LNEVKQSIATKMHENNIRIKVIS 673 S+ LL ++NDILD + V+AG + L +I L + EV +A + + + + + Sbjct: 323 SAEALLAIINDILDFSKVEAGHLVLE--SIPFQPLMEMEEVVALLAPRAQDKGVALVTEA 380 Query: 674 DGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-FSVKNNG 727 ++ G V D R Q+ + ++ NA+ F+ +G V+ +A + + FSVK+ G Sbjct: 381 QWQVLPGQVVGDPLRFRQVLTNLIGNAIKFTQQGEVVVALGWQAGQGTAGVLHFSVKDTG 440 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I D K +F F RR G GLGL+I I L GG + + S Sbjct: 441 VGIDADTQKKLFQVFTQADGSTTRRFGGSGLGLAISRQLIELQGGQIGVES 491 >gi|239995910|ref|ZP_04716434.1| histidine kinase response regulator hybrid protein [Alteromonas macleodii ATCC 27126] Length = 542 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 4/249 (1%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602 ++ SV A L KN L + + K+ F+ +VS+E+R+PL I F+ LL+ KL +L Sbjct: 150 LSKSVVAHLELKRKNRELERTSQFKSDFLSYVSHEIRTPLNAINTFSQLLEGEAQKL-NL 208 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S + + ++S S LL +VN +LD+ ++AG M++ + D + + Sbjct: 209 PSSFTTPLSHVSQSGERLLEIVNSVLDIKQIEAGKMRVMPRAVNTKDFFTHLFSLTKIRA 268 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++ I I D S D + Q+ +LSNA+ F++ G +V + NG IF Sbjct: 269 EDSGIVFSTSIDDAVPDSLFFDDTKFGQVALNLLSNAIKFTNHGKSVKAQVKYKNGKVIF 328 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V + G + +D K +F F + Q G GLGL+I + + L G + +SS Sbjct: 329 NVIDQGIGMSDDDQKRLFTPFERMENARQISGTGLGLNISKRLVELMDGSIKVSSKLNHG 388 Query: 782 TTINCRIPS 790 T I+ +P+ Sbjct: 389 TRISVTLPA 397 >gi|229070714|ref|ZP_04203944.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185] gi|228712384|gb|EEL64329.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185] Length = 448 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + +L +L LA++D L L + +V + K E +I ++ + D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK 337 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ + Sbjct: 338 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRI 394 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 395 FDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447 >gi|229075210|ref|ZP_04208204.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18] gi|228707987|gb|EEL60166.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18] Length = 448 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDITVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447 >gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] Length = 863 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 158/336 (47%), Gaps = 33/336 (9%) Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDS-VLEYS 529 P N +R+Y+E W + + ++R K+ +EL S + S Sbjct: 252 FDPDAITNNKEELLNRFYDEDRNW------LRNILNDRTIIKTATRNIELKGSSQTFQLS 305 Query: 530 IIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 + P+ T+++ + T+ + +R L + + A + K+ F+ H+S+E+R+P+ Sbjct: 306 VYPVRQGLIDWTVVSLFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNA 365 Query: 587 IIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 IIG T T L ++ KQ ++ +S LL L+NDILD++ +++ + L+Y Sbjct: 366 IIGMT----TIALSRISDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEK 421 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L + ++ + I + E + ++++ D V D+ R+ Q+F +++NA+ F+ Sbjct: 422 FDLQETVHSIYNLIEPQAKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTP 481 Query: 704 KGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-----HRGQRRG 753 +G V +K + ++ + +NG + +D VF F H G G Sbjct: 482 RGGKVTMKLSEKQTSPEHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFG---G 538 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + +NL GG++ + S + +T +P Sbjct: 539 TGLGLAITHNLVNLMGGNIDVQSEEGKGSTFTIDLP 574 >gi|294672858|ref|YP_003573474.1| sensory box histidine kinase [Prevotella ruminicola 23] gi|294473160|gb|ADE82549.1| sensory box histidine kinase [Prevotella ruminicola 23] Length = 914 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 134/251 (53%), Gaps = 12/251 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + A++ L ++ + ++ ++K +F+ ++++E+R+PL I+GF+DLL + + Sbjct: 673 NINTLMEAQQKLKDETQRAEESGKMKAAFLANMTHEIRTPLNAIVGFSDLLPVVE---EH 729 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S++ +++ I + +L+ L+NDIL+ + V + + + + +++ Q++A ++ Sbjct: 730 SERMEFIRIIRNNCDMLMRLINDILEASNVGQA-LAIQPEQVDFAKVFDDICQTLAQRVD 788 Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 E + I D +F A D+ R+ Q+ + +NA+ ++ +G + +D G + F Sbjct: 789 EAGVLF--IKDNPYETFPATLDKGRIQQVLTNFTTNAIKYTHEGHIKVGYREQDGGIY-F 845 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG- 780 ++ G+ IP+D +VF RFV Q G GLGLSI ++ G + + S EG Sbjct: 846 YCEDTGAGIPKDKQAAVFERFVKLNDFVQ--GTGLGLSICKAIAERCEGKIGVESEGEGH 903 Query: 781 VTTINCRIPSK 791 +T IP K Sbjct: 904 GSTFWMWIPRK 914 >gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134] gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134] Length = 1386 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 11/213 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+PL +IGF DLL + SLN Q +Y++ + S+ LL+++ DILD + Sbjct: 886 FLANMSHEIRTPLNGVIGFVDLLLET---SLNESQKEYLKTVHQSAHTLLDIITDILDFS 942 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++AG M+++ + L L+N+V + +++ + + + L F+ AD R QI Sbjct: 943 KIEAGKMEISITQTDLMHLINQVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFKQI 1002 Query: 691 FSKILSNAMDFSSKGSTV----ILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 + ++SNA+ F+ G V +LK DN F FSVK+ G I + V F Sbjct: 1003 LTNLMSNAVKFTEAGEVVLKVELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAFSQE 1062 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGL+I + L + + S Sbjct: 1063 DASTTRKFGGTGLGLTITNKLLKLMESRLKLKS 1095 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T V++TD RAER L E + +K++F+ ++S+E+R+P+ IIG + L S Sbjct: 845 TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 901 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q+ YV I + LL ++NDILD + ++AG + + +L+ +L + + Sbjct: 902 GLTPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGY 961 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718 K + + + ++ V D RL QI +NA+ F+ +G V ++ +G Sbjct: 962 KAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGR 1021 Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + F V++ G + + +F F RR G GLGL+I ++ L GG V Sbjct: 1022 RVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVG 1081 Query: 774 ISS 776 S Sbjct: 1082 AES 1084 >gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1007 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 552 ERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +RAL +KN +A KA+ K+ F+ +S+ELRSPL I+GF L++ S + + Sbjct: 599 DRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILGFAQLME-SGVPPPTA 657 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q ++ I LL L+N+ILDLA +++G + L+ I L D+L + + I + + Sbjct: 658 TQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALPDVLLDCQAMIEPQAQK 717 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723 ++IRI ADR R+ Q+ ++SNA+ ++ G TV + + + SV Sbjct: 718 SDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTVEVTCKKVAAQRLRISV 777 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776 +++G + + +F F G G G+GL + + + L GG + S Sbjct: 778 RDSGEGLSAEKVTQLFQPFNRLGQEVGSEEGTGIGLVVSKRLVELMGGEIGAQS 831 >gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 592 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/345 (24%), Positives = 160/345 (46%), Gaps = 34/345 (9%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES------DG 496 + +GV DG+I L NPA +++ +E + + G + + T S +++ +G Sbjct: 261 MGDGVIAVDEDGKIILLNPAAEEIFQLKEEK-TLGKY--TMEVTRSHKLDDAIMASLKNG 317 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 D+ I T + ER ++ + P+ N +T +V R +T Sbjct: 318 EDITEEIETIYPVER-------------MIRVHVTPIKNDKT-----TERGAVAVLRDVT 359 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E LR+ ++I+ FV +VS+ELR+PLT+I G+ + L + ++ ++++ I Sbjct: 360 E----LRRLEQIRTEFVSNVSHELRTPLTSIKGYVETLLDERDCEPGVRE-RFLQVIKDE 414 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L L+ D+L+L+ +++ + + LN ++ V ++ K I +KV Sbjct: 415 TDRLERLITDLLNLSQLESASDSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVD 474 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + R +L +++ ++ N + ++S+G V +K D + + G IPE+ Sbjct: 475 ITGIKGSRGQLERLYINLVDNGIKYTSEGGQVKIKVYEDEDRVWSEIIDTGMGIPEEDLP 534 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +F RF V + G GLGLSIV+ + H G + + S E Sbjct: 535 RIFERFYRVDKTRSRKLGGTGLGLSIVKHILERHNGGIEVESKVE 579 >gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 903 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A K+ F+ ++S+E+R+P+ IIG D++ S L Q Q++ + Sbjct: 379 LVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKS---DLTPTQRQHLNKVV 435 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS IL++L+NDILD + V+AG + + LN + + +I+ + E N+ ++ I D Sbjct: 436 YSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKNLNVRFICD 495 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF---SVKNNGS 728 + + + D R+ Q+ + SNA+ F+ GS I N D + VK+ G Sbjct: 496 PNIPPTLIGDPLRISQVLLNLTSNAVKFTRNGSITISITHDVIPNSDKVLLKARVKDTGI 555 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + ++ VF F R G GLGL+IV+ ++L GG+V+ S Sbjct: 556 GMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQS 605 >gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1088 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 12/267 (4%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADE 567 K +G L +L+ + +A + + NV + RAE ++ + E A Sbjct: 650 KGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAEESIRQAREQAELASR 709 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K F+ +S+ELR+PL I+GFT L++T LG ++ VE++S + LL+L+N++ Sbjct: 710 AKTEFLSRMSHELRTPLNAILGFTQLMETETLG---PSLAESVEHVSRAGKHLLSLINEV 766 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI---KVISDGKLGSFVADR 684 LD++ +DAG L+ I ++ L+E +SI + I + ++ +ADR Sbjct: 767 LDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPATAEMPPLQVLADR 826 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 QR+ Q+ ILSNA+ ++ V + D ++ + G I + +F F Sbjct: 827 QRVHQVMYNILSNAVKYNRINGRVTVSYRVDGPRIRITIADTGRGIEPEKLSRLFLPFER 886 Query: 745 -NAHRGQRRGVGLGLSIVESFIN-LHG 769 A G G+GL++ +N LHG Sbjct: 887 LGAESTDIEGSGIGLALSRGIVNALHG 913 >gi|298387970|ref|ZP_06997518.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259236|gb|EFI02112.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 482 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 120/216 (55%), Gaps = 4/216 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D K +F+ +S+EL++P+ I+ LL+ ++G LN +Q Q + I +S LL+ Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLS 314 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 + ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + V++ AR GD I V++ G I KS+F+ Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVI-GARQEGDMIDLYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp. PS] gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp. PS] Length = 1183 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL K + L +A++ K+ F+ ++S+ELR+PL +++ +L +K G+L KQ +Y + I Sbjct: 439 ALETKAKELEQANQYKSEFLANMSHELRTPLNSLLILGQILADNKAGNLTDKQVEYAKTI 498 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ LL+L+NDILDL+ V+AG M+L + ++L +LL+ +K E ++ + + Sbjct: 499 HSAGMDLLSLINDILDLSKVEAGKMELRFEAVLLTELLDTLKHKFRHVAEEKSLTFHITL 558 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 +D + D QRL QI + +LSNA F+S+G + Sbjct: 559 ADELPLTLYTDTQRLQQILNNLLSNAFKFTSEGEVTL 595 Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 F V + G IPE+ K++F+ F RR G GLGLSI L GG + + S + Sbjct: 665 FRVTDTGIGIPEEKQKAIFDAFQQADGTTSRRFGGTGLGLSISRQLAQLLGGELQLESQE 724 Query: 779 EGVTTINCRIPSK 791 +T +P K Sbjct: 725 NQGSTFILLLPEK 737 >gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 944 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A R + + + G I E Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-------TINC 786 +F F RR G GLGL I E + GG +S S D G T +N Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHLTLDLNE 521 Query: 787 RIPSK 791 IPS+ Sbjct: 522 AIPSR 526 >gi|26107413|gb|AAN79596.1|AE016758_200 Sensor protein torS [Escherichia coli CFT073] Length = 576 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 105 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 161 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 162 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 221 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 222 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 280 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 281 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 327 >gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 939 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 130/228 (57%), Gaps = 13/228 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ +++ +K+ F+ ++S+E+R+PL I+G+ +L+ +L + +Q Y++ I+ S+T Sbjct: 282 NKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL---DKQQRLYMDTIAQSTT 338 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKL 677 LL +++DILD + ++AG + L+ + I + D+++EV Q +++ N + + +I + L Sbjct: 339 NLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDL 398 Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGS---TV-ILKAARDNGDFIFSVKNNGSSI 730 + D R+ Q+ + ++ NA+ F+ +GS TV IL+ + + F + + G I Sbjct: 399 DVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGI 458 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 PE+ ++F F R+ G GLGL I + + GG+V +SS Sbjct: 459 PENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSS 506 >gi|303246661|ref|ZP_07332939.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492001|gb|EFL51879.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 484 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A + L++ + ++ F+ VS+E+R+PLT+I +L++ LG +N +Q ++++ Sbjct: 240 AFNDMTRRLKEEERMRTDFIDMVSHEIRTPLTSIRESVNLMRERVLGEVNERQKRFLDIA 299 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S + ++ +L ++++ + I+ L+ ST +L E+ + A +IR+ Sbjct: 300 SDELQRISVMLTSLLKVSSMASQIVDLSPSTFNPEELAREILEKAAPAAEAKHIRLTPRV 359 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIP 731 + S V DR+ L Q ++ NA+ FS TV+ L+ A +FS+ + G IP Sbjct: 360 GRDIVSVVGDRELLGQALYNLIGNAVKFSPAERTVLVGLEMADGGRKLLFSITDEGPGIP 419 Query: 732 EDMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 E+ VF+++ +RG R G+GLGLSI + + HGG + +SS T Sbjct: 420 EEEQPHVFSKY----YRGARTKRTTDGIGLGLSIARTIVEAHGGDIWLSSLPGKGCTFYF 475 Query: 787 RIP 789 IP Sbjct: 476 TIP 478 >gi|226947584|ref|YP_002802675.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|226841756|gb|ACO84422.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 464 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGINKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 1749 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 2/251 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++TD + E L E ++ E+K+ FV S+E R+PL+ I+ ++LL+ + Sbjct: 1492 LIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKW 1551 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ ++ I + + ++NDIL + +AG ++ + + + + I + Sbjct: 1552 TEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLVEEI--Q 1609 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++ NN ++ IS+ + S D + L I ++SNA+ +S S V +K + +F Sbjct: 1610 LNLNNQQVNFISEHQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCRDRCAVF 1669 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V++ G IP + +F F + G G GLGL+IV+ +++H G +S+SS+ E Sbjct: 1670 EVQDWGIGIPAEDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDIHQGEISVSSNPEVG 1729 Query: 782 TTINCRIPSKE 792 T IP K+ Sbjct: 1730 TLFTVNIPLKQ 1740 >gi|319654044|ref|ZP_08008136.1| hypothetical protein HMPREF1013_04755 [Bacillus sp. 2_A_57_CT2] gi|317394237|gb|EFV74983.1| hypothetical protein HMPREF1013_04755 [Bacillus sp. 2_A_57_CT2] Length = 456 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+ELR+PLT I G+ D++ + L + +Y+ I + L +L+ D+ DLA Sbjct: 237 FLASISHELRTPLTYIKGYADIVHSRNLSI--EDRDKYLNIIREEANRLSDLIKDLFDLA 294 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691 +D + + L D + ++KQ E + +KV L +AD RL QI Sbjct: 295 KMDKNSFIIQKRYLDLTDFMLKIKQKFTPAFKEKEMELKVSCPEDL-FIMADPSRLEQII 353 Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749 +L NA+ +S G+ +L +R D +K+NG IPE+ + NRF V + Sbjct: 354 FNLLDNAIKYSPSGAKTLLTVSRKKKDIYIKIKDNGKGIPEEDLPYILNRFYRVDKSRTR 413 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSD 778 G GLGLSIV+ + HGG +S+ S + Sbjct: 414 SLGGTGLGLSIVKELVLAHGGKISVKSKE 442 >gi|24112406|ref|NP_706916.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|24051280|gb|AAN42623.1| similar to histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|313650753|gb|EFS15154.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2a str. 2457T] gi|332759936|gb|EGJ90237.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2747-71] gi|332762781|gb|EGJ93044.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-671] gi|332767790|gb|EGJ97981.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2930-71] gi|333019955|gb|EGK39226.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-304] Length = 809 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q ++ I+ S LL + Sbjct: 344 KASQAKSAFLTAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLQAITDSGESLLTI 400 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 401 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 460 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 461 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 519 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 520 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 566 >gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 468 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 24/264 (9%) Query: 532 PLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 PLP +T D V A +AL L++A E + F+Q S+ELR+P+T I+G Sbjct: 216 PLPEPET-------RDEVAALVKALNGMLTRLQEAFEAQTRFLQDASHELRTPITAILGH 268 Query: 591 TD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 LL+ + L Q + +E + + + LV+D+LDL+ +G ++ + + D Sbjct: 269 VGYLLRRT---PLTEAQRESLEVVKREAERMGKLVSDLLDLS--QSGAWRIRPVPVRVLD 323 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL EV++ A K + I ++ D + + D RL Q+ + ++SNA+ G+ + Sbjct: 324 LLEEVREEFA-KSFDGEILVEAPEDLYV---LGDPDRLHQVMANLVSNAL---KAGARHV 376 Query: 710 LKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 A D GD + V+++G IPE+ +F RF V A +R G GLGL+IV++ + Sbjct: 377 WLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILE 436 Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790 HGG V + S T + +P+ Sbjct: 437 AHGGEVWVESQVGKGTAFSFSLPA 460 >gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1333 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 5/232 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ K+ F+ +S+ELR+PL +++G+ +LL+T +L + Q +E I S+ Sbjct: 941 AAEAANHAKDEFLSILSHELRNPLNSMLGWANLLRTHQLEEVTVNQG--LEAIERSAQAQ 998 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L++D+LD++ + +G ++++ + L ++ + NI+I+ D Sbjct: 999 NHLISDLLDVSRISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPM 1058 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D RL Q+ +LSNA+ F+ + + VK+ G+ I D VF Sbjct: 1059 LGDPIRLQQVIWNLLSNAIKFTPTKGRIDVTLEYTYFQAQIQVKDTGAGIKADFLPYVFE 1118 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 RF +G+GLGLSIV + LHGG V + S EG +T ++P Sbjct: 1119 RFRQADGTRTRSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKLP 1170 >gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 1140 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 6/244 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T +R L + E A+ K+ ++ +S+ELRSPL +I+G+ LL+ + S N Sbjct: 651 ITAHEETDRKLQQAKEKAEAANSAKSRYLTGISHELRSPLNSILGYAQLLEHDEEISENK 710 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + V I S L +L+ +LD++ +++G + ++ + ++ LL+++ + E Sbjct: 711 RYQLSV--IRNSGEHLSDLIEGLLDISKIESGRLDIHRDQVRISALLDQLVYMFRLQAEE 768 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +R + L +V D +RL QI +LSNA+ F+ +G R FS+ Sbjct: 769 KGLRFEYQCHSVLAEYVTTDEKRLRQILINLLSNAVKFTERGGVSFSVRYRSQVAE-FSI 827 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 K+ G IPED + +F F V Q G GLGL+I +++ GG + + ++ EG Sbjct: 828 KDTGVGIPEDELERIFRPFERVRTPGSPQVSGTGLGLTITRLLVDIMGGDLEVVNNPEGG 887 Query: 782 TTIN 785 T Sbjct: 888 CTFT 891 >gi|229046907|ref|ZP_04192539.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676] gi|228724452|gb|EEL75777.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676] Length = 448 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELP 447 >gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 1168 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 12/239 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ ++ +E+R+P+T ++G ++LL S L+ +Q Y + I + Sbjct: 792 KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASP---LDPQQRGYTQSIRHAG 848 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL+L+ND LDLA +++G ++L L+ LL ++ + + +R + + Sbjct: 849 EHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPP 908 Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733 G D R+ QI +LSNA+ F+S+G+ + AR +G+ F V++ G I ++ Sbjct: 909 GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 966 Query: 734 MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F RF ++ R Q G GLGL+I G + + S T +P Sbjct: 967 QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1025 >gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 714 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + +K+ F+ +S+ELR+PLT I+G++ LL+ G + + + I ++ Sbjct: 323 LERTGRLKDEFLALLSHELRTPLTAILGWSQLLRLR--GPSDEILGRALGTIERNARAQS 380 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+LD++ + G + L+ + L ++L + +S IR+++ + + Sbjct: 381 KLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVM 440 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL QI ++SNAM F+ +G V + R+ +V + G I + VF + Sbjct: 441 GDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQ 500 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVT 782 F R G+GLGLSIV+ + LHGG V SS+ D+G + Sbjct: 501 FRQADASTTREYGGLGLGLSIVQHLVELHGGTVEASSAGKDQGAS 545 >gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 755 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 +++K+ F+ ++S+ELR+PL II FT L + G + +Q + E + ++ LL L+N Sbjct: 254 NQLKSRFLANMSHELRTPLNAIINFTAFL--DRYGEFSERQRELQERVLYNADHLLGLIN 311 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL+ ++AG M+L Y L ++ V + + + + +++ +L + V D+ Sbjct: 312 DILDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLELELDMPEELPTMVIDKV 371 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED-MCKSVFNRFV 743 R+ Q+ +LSNA+ F+ +G + + D SV+++G I PE + V Sbjct: 372 RIRQVLLNLLSNAVKFTEQGQINVTISQPDPETVQISVQDSGIGIAPEHQQQIFEEFQQV 431 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N Q +G GLGL I + + +HGG++ + S+ +T +P Sbjct: 432 QNEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFFFSLP 477 >gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1125 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 27/265 (10%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 FV++T S + L A +A+ K++F+ +S+E+R+PL I+G +LL S Sbjct: 491 AFVDMTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHS--- 547 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +LN Q ++ I ASS LL ++ D+LD + ++AG M+L + L D + A Sbjct: 548 ALNPLQRDRLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAP 607 Query: 661 KMHENNIRIKVISDGKLGSFVA--------DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 H I + +G F A D RL Q+ + +LSNA+ F+ +G + Sbjct: 608 AAHLKRIAL-------VGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQGRVTLSLD 660 Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 L AR G + V + G I ++FN F+ RR G GLGL++ + Sbjct: 661 VERLPCAR-GGMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRL 719 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 + GG + + S + R+P Sbjct: 720 VTQMGGTIDVQSEPGQGSRFTVRMP 744 >gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 785 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++ + +AE+ L + E A K+ F+ +S+E+R+P+ +IGFT LL Sbjct: 389 MDIDEQKKAEQELIKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQ---DP 445 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIAT 660 +Q +Y+ + S+ LL L+NDILD + ++AG K+ + + N LL ++ + Sbjct: 446 KPEQMEYLNILKFSAENLLVLINDILDFSKIEAG--KIEFEEVDFNVLALLENIRSGVLQ 503 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K +E I +K+ +S+ V D RL QI + ++SNA+ F+ G I A D Sbjct: 504 KANEKGIMLKLKVSNDVNIMVVGDPTRLGQILTNLVSNAVKFTESGKVTISAAVSARADK 563 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V++ G IP + +++F+ F R+ G GLGL+I + + L ++ Sbjct: 564 HVTIDFRVEDTGIGIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIH 623 Query: 774 ISS 776 + S Sbjct: 624 VDS 626 >gi|190890063|ref|YP_001976605.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190695342|gb|ACE89427.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 759 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 10/260 (3%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591 A L +V V ER L + E R+ E K+ + VS+E+R+PL+ I+G T Sbjct: 206 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 265 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 LL ++L +Q Y+ I S L LV D+LD +T++ G +L+ + L LL Sbjct: 266 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 322 Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 V + +A + HE I I +S + D RL Q+ ++ NA+ F+ G V + Sbjct: 323 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 381 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769 + + D G+ + +V ++G + + VF F + G GLGL+I + G Sbjct: 382 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 441 Query: 770 GHVSISSSDEGVTTINCRIP 789 G ++++S + R P Sbjct: 442 GALTVASEKGLGSEFTIRFP 461 >gi|183220974|ref|YP_001838970.1| putative sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911069|ref|YP_001962624.1| two component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775745|gb|ABZ94046.1| Two component response regulator, part [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779396|gb|ABZ97694.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 540 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 8/251 (3%) Query: 542 FVNVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + + +S+ ER L + E L +A + K F+ HVS+ELR+PL +IIGF+ L+ +L Sbjct: 291 YKSTLESLILERTLDLSRTKEELERAYKAKTEFLAHVSHELRTPLNSIIGFSKLI---QL 347 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + +Y++YI + T LL ++N+IL L +++G + L S ++ + + I Sbjct: 348 PENDITGKEYLQYIYSGGTRLLKMINEILSLMKIESGQLNLQISEFKPEEIARQSLELIQ 407 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + I+ + + +D ++ QI +LSNA+ + S V G Sbjct: 408 PQADAKGMEIRFFPPIQSKNIRSDAGKIQQILLNLLSNAIKYGDH-SYVEFHCEWIEGRV 466 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778 FSV++ G I E+ +F+ F G+ G GLGLSI + GG++ ++S Sbjct: 467 TFSVRDFGPGITEEDQSRIFHSFTRLNDDGKIEGSGLGLSISQGLAEKLGGNIELTSLWG 526 Query: 779 EGVTTINCRIP 789 EG T I +IP Sbjct: 527 EGSTFI-LKIP 536 >gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 952 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 444 VMVDVSARVKIEESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 500 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL + + + +S SS +LL +++DILD + +++ +K+ T ++ + + Sbjct: 501 SLPEETQRLLAAMSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLP 560 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + + + ++ VA D R+ Q+ S +LSNA+ F+ G +IL+ + Sbjct: 561 LVVRKRLVMYCFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDTG-CIILQVRVQDFYL 619 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777 F +++ G IP +F+ F QR +G GLGL+I E ++L G +++ S Sbjct: 620 EFRIRDTGLGIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESE 679 Query: 778 DEGVTTINCRIP 789 + RIP Sbjct: 680 PGMGSIFTVRIP 691 >gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 856 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 11/238 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELRSPLT + T LL+ + ++ Q+ S + Sbjct: 620 NSARKELEQRKDDFISMASHELRSPLTALKMHTSLLR--RQLAMQGFQTSAPALSSMETQ 677 Query: 619 I--LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 I + LV ++LD++ + AG ++ T+ L+ LL E IA M + + ++ G Sbjct: 678 INKVTRLVEELLDVSKIQAGRLEYRQETVDLDALLRE----IADTMQQTHPSHSILVRGA 733 Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + + +ADR RL Q+F+ ++SNA+ +S TV + V+++G IP + Sbjct: 734 VQANLMADRDRLGQVFTNLISNAIKYSPGAETVEMDLEASPETVTIRVRDHGLGIPREQR 793 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V+ + G+G+GL IV + HGG +++ S+ + +P K Sbjct: 794 DKIFERFYRVTGPKQKAIPGLGMGLYIVAEIVKRHGGTITVESAVGKGSIFTVTLPKK 851 >gi|229145815|ref|ZP_04274195.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24] gi|228637646|gb|EEK94096.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24] Length = 448 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNNGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELP 447 >gi|120435810|ref|YP_861496.1| two-component system sensor histidine kinase [Gramella forsetii KT0803] gi|117577960|emb|CAL66429.1| two-component system sensor histidine kinase [Gramella forsetii KT0803] Length = 400 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 13/213 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F VS++L+SPL NII ++LLK G N QY+EY+ SS L N ++ IL Sbjct: 184 FASLVSHDLKSPLANIISLSELLKDENEGKFNEDTEQYIEYLVESSYSLRNYIDGILGFY 243 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQ 689 D +++ +Y+ + L LL + T +++ ++I I D L + ++ L Q Sbjct: 244 RSDH-VLEKDYTNVDLRKLLKGI-----TDLYQVSDDIEIAYPDDVMLHN--VNKAALTQ 295 Query: 690 IFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746 +F ++SN++ ++ K V + +++ + F VK+NG IPE+ K +F+ F + A Sbjct: 296 VFMNLISNSLKYNDKDLRKVDIGFSKNEEYYFFEVKDNGKGIPEEKFKDIFDLFTTLETA 355 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 R G G+GL+ V+ I GG +SI S E Sbjct: 356 DREGNHGSGIGLATVKKLIESMGGTISIESEPE 388 >gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 29/349 (8%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++ +++GV R+ L NPA + ++ +EN I+ I R Y E D DL Sbjct: 119 LNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVI-----RNY-ELD--DL 170 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERALTE 557 F+ + +++ + L++L+ + + P L +N + V R +TE Sbjct: 171 FS---QALHNQKTIVSNELQILTPEPRFFRVHVSP-----LKGINGEIIGVVGLLRDITE 222 Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISA 615 + RK + ++ FV +VS+ELR+PLT+I GF L+T G++ ++ ++E ++A Sbjct: 223 R----RKLERMRTEFVANVSHELRTPLTSINGF---LETLLDGAIEDPKTARHFLEIMNA 275 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L NL++D+L L+ ++ LN + L D++N Q + E I++ + Sbjct: 276 ETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPD 335 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 KL D L Q+ ++ NA+ ++ V + + V + G IP++ Sbjct: 336 KLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREKVRVYVADTGIGIPQEDL 395 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +F RF V A G GLGL+I + + +HGG + + S G T Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPGGST 444 >gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A] gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1951 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 15/221 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ L+ Sbjct: 1257 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKLNY L+ +V + ++T + + + + + ++V Sbjct: 1314 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1373 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI--------FSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+++G K N + FS+ + G Sbjct: 1374 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGRGFT 1433 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 E+ + +F F + + Q G GLGL I + LHGG Sbjct: 1434 EEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1474 >gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG L S+ + Y+E I+ S+ LL L+NDIL Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQPPP-PPRLYDYLEKITGSAATLLTLINDIL 472 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687 D + ++AG + ++ L+++LN++ +A + E + + D G V D RL Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532 Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFV 743 Q+ + SNA+ F+ +G T+ + A D + +V++ G + + + +F F Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFT 592 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 R+ G GLGLSI + L GG + + S+ +T + Sbjct: 593 QADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFS 636 >gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium botulinum H04402 065] Length = 464 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELSTKYKEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1131 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 17/256 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A ++L K L + K++F+ ++S+ELR+PL +++ LL +K +L +KQ +Y Sbjct: 437 ARQSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLTAKQIEYA 496 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669 I S LL L+NDILDLA ++AG + + ++ + ++ ++ Q E ++ I Sbjct: 497 TIIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLI 556 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RD 715 + + + DR R+ QI +LSNA F+ + + L + ++ Sbjct: 557 TKLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRKE 616 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +V + G IP D + +F F V + + G GLGLSI I GG ++ Sbjct: 617 KSLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEIT 676 Query: 774 ISSSDEGVTTINCRIP 789 + S + +T +P Sbjct: 677 LHSEEGKGSTFTLWLP 692 >gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] Length = 1125 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +KNE L++AD +K+ F+ S+ELR+PL ++G + + G L +Q + I Sbjct: 442 IKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAESMLAGAEGPLPERQKHQLRMII 501 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLV+D+LD + G ++++ + + + V + + + +RI Sbjct: 502 NSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQVP 561 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L AD QRL Q+ ++ NA+ ++ +G +I+ A G V + G IP D Sbjct: 562 IDLPLVRADGQRLEQVLYNLIGNAIKYTDEGK-IIISATVLQGQLRIQVVDTGQGIPSDQ 620 Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F ++ R+G GLGLSI I++ GG + +SS TT + +P Sbjct: 621 LEYIFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLP 677 >gi|239787729|emb|CAX84244.1| Sensor protein [uncultured bacterium] Length = 817 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 12/247 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L + +A A K+ F+ ++S+E R+ L I+GF LL + G ++Q + + Sbjct: 325 RELLQTKQAAEAASHAKSVFLANMSHEWRTTLHTILGFARLLLRN--GVTATEQQESLHI 382 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S LL+LVND+L+++ +++G M LN + L LL ++ + + E ++ V Sbjct: 383 IEKSGQHLLDLVNDVLEISRIESGTMTLNQECVDLPGLLADMGNMMRLRATERSLSFVVT 442 Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAA---RDNGD--FIFSV 723 + +V D + Q+ +L NA+ F+ +G V L+ A + +G I V Sbjct: 443 LSEDIPRWVCMDGGKWRQVLLNLLGNAIKFTRQGGVTMRVALQPAPMEQPDGKPMLICEV 502 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 ++ G I E + +F F+ H G G GLGL+I ++ L GG + +S + Sbjct: 503 EDTGEGIAEQDMQRIFEPFIQVGHSAGSMEGTGLGLAISRHYLRLMGGELEATSQRGAGS 562 Query: 783 TINCRIP 789 CR+P Sbjct: 563 LFRCRVP 569 >gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 476 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTIL 620 +A+ K++F+ ++S+ELR+PL IIGF+++L+T G + Q +Y+EY I+ + L Sbjct: 241 EANRAKSAFLANMSHELRTPLNAIIGFSEVLQTETFGPIG--QKRYIEYATDINMAGYHL 298 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L++++++LDL+ ++AG + LN STI ++ + + + I+ + Sbjct: 299 LHVIDEVLDLSKIEAGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEIQRALTATIPVM 358 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPED---MC 735 D +L QI ++SN++ ++ G +V + D ++ + G + +D + Sbjct: 359 ETDEGKLRQIVLNLVSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTGVGMSKDELALA 418 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + F R + +A R G GLGL + +SF++L GG I S TT++ ++P Sbjct: 419 MTPFGR-IDSAMSYTRGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVSIQLP 471 >gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis TAC125] gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas haloplanktis TAC125] Length = 1107 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++T+ E L +A K SF+ ++S+E+R+P+ IIGF+DLL + Sbjct: 511 LVDITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDT---P 567 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L+ +Q +++ ++ ++ LL L+N+ILD A ++ G + + L +++ + + + Sbjct: 568 LSKEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLE 627 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + N+ + + I+ ++ D RL QI + ++ NA+ F+ +G+ + + N Sbjct: 628 AKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGAVTVTVSTTQNNHLF 687 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL-HGGHVSISSS 777 F V++ G I +D K+VF FV RR G GLG +I + + L HG +S Sbjct: 688 FEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEV 747 Query: 778 DEG 780 D+G Sbjct: 748 DKG 750 >gi|113477573|ref|YP_723634.1| periplasmic sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110168621|gb|ABG53161.1| periplasmic sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 750 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 123/252 (48%), Gaps = 21/252 (8%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V + +S + L +K + A++ K+ F+ ++S+ELR+PL I+G+T++L S+ + Sbjct: 244 VKLANSYYSLDFLEQKRQVADAANKAKSEFLANMSHELRTPLNGILGYTEILSRSE--AW 301 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 K+ + ++ I + LL L+NDILD++ ++A ++L I L L + + I + Sbjct: 302 GEKEKKGIDIIHQCGSHLLTLINDILDISKIEARKLELQPQAIHLPSFLQGIGEIICIRT 361 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------ 709 + + + D L V D +RL Q+ +L NA F+ KG Sbjct: 362 EKKGVDFVYLPDANLPEGIVTDPKRLRQVLINLLGNAAKFTEKGQVTFKVRIIDSMAEQK 421 Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764 + +DN F +K+ G I D + +F F G+R G GLGL+I ++ Sbjct: 422 KDKAQIPQDNVRLSFQIKDTGIGISPDSLEKIFQPF-EQVGEGKRHSEGTGLGLTITDNI 480 Query: 765 INLHGGHVSISS 776 ++L G ++ + S Sbjct: 481 LSLMGSNIQVKS 492 >gi|298247450|ref|ZP_06971255.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550109|gb|EFH83975.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 648 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 163/367 (44%), Gaps = 21/367 (5%) Query: 440 IDHLSEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSP-----GTHIRNIAATCSRYYNE 493 +D LS GV V G D R+ +N + +W T+ L P TH I + Y Sbjct: 289 LDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQPLIEFLRTHDITILNAQGQPYA- 347 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 D F A + LQ + L I P + + + S RA Sbjct: 348 PDEMATFRAFKKG--EHVHGLQSIVSRHDGKRLPILIYAEPF--ELPANMGLPASERAVL 403 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQY 609 + + A+++A+ +K+ FV+ V++EL++PL + + DLL K + +L Q + Sbjct: 404 LMYQDITAIKEAEYLKDEFVEIVAHELQNPLNTLASYADLLQRDIKAENIPALTPHQQKA 463 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S++ L +L D+LD+ + AG + LN ++ + L+ +V + + I Sbjct: 464 IAAITESTSSLSSLTEDLLDVTRLQAGRLVLNLQSVNIVPLIQQVIARLQATTSRHQIEF 523 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNG 727 + S+ L D RL QI I+ NA+ +S +G +++ K + + V++ G Sbjct: 524 QASSETMLAH--VDPARLEQIMHNIIDNAIKYSPEGGPILMAFKEEPEQQRILGKVQDQG 581 Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP+ +F RF+ NA Q G+GLGL + I L GG +S S + +T Sbjct: 582 IGIPKQQHGRIFGRFMRADNARARQIPGIGLGLYLCHELIELMGGSISFDSEEGQGSTFY 641 Query: 786 CRIPSKE 792 P E Sbjct: 642 VTFPVGE 648 >gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7] gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7] Length = 330 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 141/273 (51%), Gaps = 10/273 (3%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL---RKADEIKNSFVQHVSYELRSPL 584 Y I L + ++ + +++ S+ ++ ++EK + + R+ ++++ F ++S+EL++PL Sbjct: 20 YYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPL 79 Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST---ILLNLVNDILDLATVDAGIMKL 640 I+G L K N + + + I+ LL L+N+++D +D+ ++L Sbjct: 80 NIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIEL 139 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N + +L+ E+ QS+A K NNI I +D + D ++ +I +LSN++ Sbjct: 140 NMVNCNIVNLVEEITQSVA-KYINNNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVK 198 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 F+ G ++ + D +VK+ G IP++ ++F+RF V + + G G+GL Sbjct: 199 FTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGL 258 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 SIV+S + +H G + + S T ++P+K Sbjct: 259 SIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAK 291 >gi|255585092|ref|XP_002533252.1| ethylene receptor, putative [Ricinus communis] gi|223526932|gb|EEF29137.1| ethylene receptor, putative [Ricinus communis] Length = 739 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDHARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G +L+ TI L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSFQLDMGTINLHAVFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709 + I + L + + D +RL+Q ++ NA+ FS +G+ +I Sbjct: 432 PIASVKKLPITLTLSPDLPEYAIGDEKRLMQTILNVVGNAVKFSKEGNILITASVAKLES 491 Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 LK R DN ++ VK+ G + P+D+ K +F +F + R G GL Sbjct: 492 LKDLRLPDFFPVTSDNHFYLRVQVKDEGLGVNPQDIPK-LFTKFAQSQSLATRNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574 >gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 998 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A A KN F+ +S+E+R+P+ IIG + LL ++ +QS +V I Sbjct: 474 LEEAKQAAESASRTKNVFLASMSHEIRTPMNAIIGLSSLLAEM---DMSKEQSNFVGTIR 530 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 AS+ LL+L+NDILD ++A ++L L +++ E+ ++ + E + D Sbjct: 531 ASAESLLSLINDILDYTKIEANELELEEVPFDLREIMEELTGMVSLQADEKGLGFSCYLD 590 Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSS 729 G + D R+ QI + +NA+ F+ G I A + D FSVK+ G Sbjct: 591 TATEGMVLGDPGRVRQILLNLATNAIKFTISGRVDISGACIEETDTHYVLGFSVKDTGIG 650 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE S+F+ F V + + G GLGL+I + GG + ++S Sbjct: 651 IPETAFGSLFDSFRQVDSTTTRKYGGTGLGLAICKRLCEKMGGEIQVTS 699 >gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 468 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +++E + K+ +++ F +VS+EL++PLT I G+ +L++ G ++ I Sbjct: 209 IRQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGE---NTERFASEIH 265 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL L+NDI+ L+ +D G + Y + L L E + + N+ I+V Sbjct: 266 KNAARLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRV--Q 323 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G AD+Q + ++ + NA+ ++ K TV + +NG SVK+ G I + Sbjct: 324 GGEAPVFADKQLMEELIYNLCDNAIRYNKKDGTVTVTTGIENGHTFLSVKDTGIGISAEH 383 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + VF RF V + G GLGL+IV+ + HG +++ S Sbjct: 384 QERVFERFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLES 427 >gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 784 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L AQ L +T +++ RA K EA A+ K+ F+ ++S+ELR+PL I+G+T Sbjct: 281 LLQAQEQLEATVLTRTLQLARA---KEEA-ELANRAKSEFLANMSHELRTPLNGILGYTQ 336 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L K + +L+ Q + V+ I + LL L+ND+LDLA ++A + + + L L Sbjct: 337 LFKRDE--ALSPNQLKGVDIIHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTALFQ 394 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ I + + +R L ++V D ++L Q+ +L NA+ F+ G V L+ Sbjct: 395 DLIHLIGVRAEQKGLRFLADLAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VTLR 453 Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFI 765 R + F V++ G I D +F F GQ G GLGLSI + + Sbjct: 454 VERASTKAQPYRLRFVVEDTGIGIASDHLAGIFKPFQQVRETGQFIEGTGLGLSITDQLV 513 Query: 766 NLHGGHVSISSS-DEG 780 L GG + +SS+ DEG Sbjct: 514 QLLGGDLRVSSAIDEG 529 >gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1209 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L+ E +A+ K++F+ +S+E+R+P++ IIG +L+ TSK ++ + YV Y Sbjct: 695 KILSITRERAEQANRAKSTFLATMSHEIRTPISAIIGLLELVVTSKEHVVSDDEPIYVAY 754 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 SA S LL L+ DILD+A +++G ++LN + + ++L+ V + + N+R+ Sbjct: 755 QSAQS--LLGLIGDILDMAKIESGKLELNPAWVSFHELILPVVKVFDGLARQKNLRLSCE 812 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------FS 722 I G D R Q+ S +LSNA+ F+ GS +L + + Sbjct: 813 IKTGHPDEVYIDPMRFRQVLSNLLSNAIKFTEIGSVDVLVKCISKKEPLETHQIQRLEVK 872 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 VK+ G I + K VF + + ++ G GLGLSI + + G + ++S T Sbjct: 873 VKDTGVGISQADQKLVFQPYSQSDFGKKQSGTGLGLSICLQLMQMMNGSIKLNSELHQGT 932 Query: 783 TINCRIP 789 + +P Sbjct: 933 CVELSVP 939 >gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1] gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1] Length = 916 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L K EA R A+ K+SF+ ++S+E+R+PL IIG + +L S L + Q Y+ Sbjct: 383 RMLAAKEEAER-ANVAKSSFLANMSHEIRTPLNGIIGMSGILSESNLDPI---QRDYLNT 438 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I SS LL L+NDILD++ +++G + ++ + L ++ + + +K E ++++++ Sbjct: 439 IDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAKEKDLQLQIR 498 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727 S + D RL QI ++SNA+ F++KG + + F++ + G Sbjct: 499 FSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCSIYFAIVDTG 558 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +D S+F F R+ G GLGL+I + L GG++ I S Sbjct: 559 IGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDS 609 >gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 1169 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 7/211 (3%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K++F+ ++S+ELR+PL +I GF +LL ++ G LN +Q YV+ I SS LL LVND Sbjct: 308 QAKSAFLANISHELRTPLNSIDGFINLL--ARHGELNPEQDLYVQTIRKSSAHLLALVND 365 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685 +LD + ++AG + L+ L D + +V ++ E +R+ V+ + + D Sbjct: 366 VLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRINGDAL 425 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+ + I+ NA+ F+ G V+ + D D + SV+++G I K +F F Sbjct: 426 RLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 485 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 R+ G GLGL I + L GG + Sbjct: 486 QGDPSITRQYGGTGLGLVISKQLTRLMGGDI 516 >gi|298293988|ref|YP_003695927.1| histidine kinase [Starkeya novella DSM 506] gi|296930499|gb|ADH91308.1| histidine kinase [Starkeya novella DSM 506] Length = 432 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 130/277 (46%), Gaps = 26/277 (9%) Query: 523 DSVLEYSIIPL---------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 D L I+P+ P +L FV++T R+ ++++ F+ Sbjct: 160 DRWLRADIVPIRPGPARDGAPTEAVLLGFVDLTPQ--------------RRVEQMRVDFI 205 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 + S+ELR+PL ++ GF + L+ N+++ ++++ + + + L++D+L L+ + Sbjct: 206 ANASHELRTPLASLSGFIETLQGPARNDANARE-RFLKIMGEQARRMSRLIDDLLSLSRI 264 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 + + I L +++ V+ ++ E + I + DR L+++F Sbjct: 265 ELNAHLRPEAEIDLVSVISHVRDALGPLGRERGVEIAFEHPQPPVNVRGDRDELIRVFEN 324 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751 ++ NA+ + G V + AR+ GD + SV++ G I + + RF V AH ++ Sbjct: 325 LVENALKYGGAGGRVEIAIAREGGDAVVSVRDYGPGIAPEHVPRLTERFYRVDTAHSREQ 384 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 G GLGL+IV+ + H G + I S +T + R+ Sbjct: 385 GGTGLGLAIVKHIVARHRGKLGIESVPGEGSTFSVRL 421 >gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] Length = 762 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 139/272 (51%), Gaps = 13/272 (4%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 ++G + +L S E I N T L +N T+ +A+RA + E A + K+ F+ Sbjct: 317 IKGIVTVLRKSQSEAIEIEREN-NTRLETIN-TELTQAKRAAEQAFEVANNASQSKSDFL 374 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +S+++R+P+ I+G T L++ K +YV+ I S+ LL ++ND+LD++ + Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHD--AGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692 +AG +YS + + + E++ + E + + + + + +V +D L+QIFS Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492 Query: 693 KILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--S 744 +LSNA+ ++ KG + + + F+V +NG + ED +F+ F Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ + +G GLG++I ++ I GG + + S Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584 >gi|94271091|ref|ZP_01291888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450562|gb|EAT01700.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 421 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 34/253 (13%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+PL IIGF++L L + QY+E I + LL L+N IL Sbjct: 6 KSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIKTAGDTLLELINGIL 61 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 DLA +++G ++L + + + + A + + D + G V D RL Sbjct: 62 DLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDPAVPGEVVGDPARL 121 Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD------------------------FIFS 722 Q+ ++ NA+ F+ +G V+ ++ A D+ D F+ Sbjct: 122 TQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEVAPPAASDATSGLLHFT 181 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGV 781 V+++GS I + +FNRF G GLGL+I S + L GG + + S EG Sbjct: 182 VRDSGSGIAAEQQGRIFNRFAQGEGISTHGGHGLGLAIAASLVELMGGEIWLESRPGEGS 241 Query: 782 T---TINCRIPSK 791 + TI R+P Sbjct: 242 SFHFTIAYRLPPP 254 >gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 697 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 +NEA R A +K+ F+ +S+ELR+PL I+G++ L+ + L + + +E I ++ Sbjct: 306 RNEAER-ASRLKDEFLATLSHELRTPLNAILGWSQLILSGNLKKEDIHRG--LETIERNA 362 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L+ D+LD++++ +G ++L+ + +L+ +S+ + +K K Sbjct: 363 RVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAKGVILKKTLGKKF 422 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 S + D RL QI +LSN++ F+ KG + + + N + ++GS I Sbjct: 423 DSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNLFLEIRISDSGSGITSAFMPY 482 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 VF+RF R+ G+GLGL+IV+ + LHGG V S EG Sbjct: 483 VFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEG 527 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 F +V+ AE ALT E A +K+ F+ ++S+E+R+P+ IIG + L LKT Sbjct: 859 FQDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTE--- 915 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q YV+ I ++ LL ++NDILD + ++AG + + ++ L+ +L+ + + Sbjct: 916 -LTPRQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTE 974 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K ++ + I + V D RL QI +NA+ F+ G I+ ++ + Sbjct: 975 KTRAKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSET 1034 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V++ G I + +F F R+ G GLGL+I + L GG V Sbjct: 1035 EVLLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVG 1094 Query: 774 ISS 776 + S Sbjct: 1095 VES 1097 >gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] Length = 871 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 35/262 (13%) Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++TD R+E AL +EA+R AD K+ F+ ++S+E+R+P+ +IG DLL +KL Sbjct: 277 DITDLKRSEAAL---HEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL- 332 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q YV+ I SS LL L+NDILD + ++A ++L L + +S + Sbjct: 333 --DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSF 390 Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------- 711 K E + + + IS + D R+ Q+ + ++ NA+ F+ G + Sbjct: 391 KASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREER 450 Query: 712 AARD------------NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 A RD D + SV ++G IP +V N F RR G Sbjct: 451 ADRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGT 510 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGLSI + L GG + + S Sbjct: 511 GLGLSISRQLVELMGGELHLQS 532 >gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1261 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 130/260 (50%), Gaps = 16/260 (6%) Query: 529 SIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +I+PL N+ +T F ++T+ R E+ E+ +AL + + K+ F+ +S+ELR+P Sbjct: 842 NIVPLRNSWGEITGAINCFYDITERSRLEQKTQEQAQALAELHQRKDEFLAMLSHELRNP 901 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L + LL+ K + Q Q + I + L +LV+D+++++ + +G ++L Sbjct: 902 LAPLASAVQLLQRQK---NEAPQQQALSIIERQTGQLKHLVDDLMEISRITSGSVRLRQE 958 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + L D++ ++ M + + V + AD RL Q+ +L+NA ++ Sbjct: 959 RVSLGDVVERALETTRPLMLQRRHELAVSLPPEPLWLHADATRLEQVLVNLLTNAAKYTD 1018 Query: 704 KGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756 KG + L A ++ G + V++ G I ++ +F+ F + A R R G+G+ Sbjct: 1019 KGGRIWLSAGQEEAAGTGAAVVRVRDTGIGIAPELLPRIFDLF-TQAERSIDRSQGGLGI 1077 Query: 757 GLSIVESFINLHGGHVSISS 776 GL +V + LHGG V + S Sbjct: 1078 GLCLVRRLLELHGGTVDVRS 1097 >gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 886 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EA A K+ F+ ++S+ELR+PL I G LL + L +Q +YV+ Sbjct: 488 LRAAKEAAETASRAKSEFLANMSHELRTPLNGIQGMAQLLDGT---DLTVEQKEYVDAAL 544 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673 AS L L+ DILDL+ V++G + L L DL+ V + E + I ++ Sbjct: 545 ASCRRLTRLLGDILDLSRVESGKLGLVSEPFRLADLIASVSAAFEPACREAGVAWITDVA 604 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD---NGDFIFSVKNNGS 728 + D R+ QI + NA+ F+ GS + +RD G +F+V + G Sbjct: 605 RDVPETLWGDEGRMRQILCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSVLFTVADTGV 664 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I E+ + VF F RR G GLGL+IV + L GG V + S T C Sbjct: 665 GIAEEDLERVFEAFHQVERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESEVGRGTECVC 724 Query: 787 RIP 789 +P Sbjct: 725 ALP 727 >gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1] Length = 939 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 130/228 (57%), Gaps = 13/228 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ +++ +K+ F+ ++S+E+R+PL I+G+ +L+ +L + +Q Y++ I+ S+T Sbjct: 282 NKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL---DKQQRLYMDTIAQSTT 338 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKL 677 LL +++DILD + ++AG + L+ + I + D+++EV Q +++ N + + +I + L Sbjct: 339 NLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDL 398 Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGS---TV-ILKAARDNGDFIFSVKNNGSSI 730 + D R+ Q+ + ++ NA+ F+ +GS TV IL+ + + F + + G I Sbjct: 399 DVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGI 458 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 PE+ ++F F R+ G GLGL I + + GG+V +SS Sbjct: 459 PENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSS 506 >gi|302385605|ref|YP_003821427.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] gi|302196233|gb|ADL03804.1| integral membrane sensor signal transduction histidine kinase [Clostridium saccharolyticum WM1] Length = 377 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 126/239 (52%), Gaps = 5/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L+++ ++A++ K+ + ++++++R+PLT++IG+ LL + L K ++YV Sbjct: 139 KTLSDRAYRAQEAEQRKSDLIMYLAHDIRTPLTSVIGYLSLLDEAPDMPLEQK-AKYVHI 197 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L NLVN+ ++ ++ +KL + L +L ++ + I V Sbjct: 198 TLEKAYRLENLVNEFFEITRYNSQQIKLEKQIVDLYYMLVQIADEFYPVLTPKANTIAVH 257 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 +D L ++ D +L ++F+ IL NA+ +S + + + A N + + +N G++IPE Sbjct: 258 ADENLTAY-GDPTQLARVFNNILKNAVAYSDPHTEISISAGERNHQVVITFRNQGTTIPE 316 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + S+F +F + A G GLGL+I + I +H G + ++ S G+T++ +P Sbjct: 317 EELSSIFEKFYRLDKARASNTGGAGLGLAIAKEIITMHQGTI-MADSKGGITSLTVTLP 374 >gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 592 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 12/239 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASS 617 ++K D +K F ++S+ELR+P+ I + LK + S + +Y++ + + Sbjct: 326 IKKYDRMKTDFFANISHELRTPINLIFSAIQVYKLKLKECICENSCSDRYKYIKIMEQNC 385 Query: 618 TILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 LL LVN+++D+ +D+G I ++NY+ + L+ + SIA + + I +D Sbjct: 386 YRLLRLVNNLIDITKIDSGYFNIDEVNYNIV---SLVEDTTLSIADYIKSKGLSIVFDTD 442 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + D + + +I +LSNA+ F+ +G +++ N VK+ G IP++ Sbjct: 443 VEEKIIACDPEEIERILLNLLSNAIKFTPRGGNIMVNVEDGNKSISIKVKDTGKGIPKEK 502 Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 S+F RFV + + G G+GLS+V++ + LHGG +S+ S + + IP K Sbjct: 503 LNSIFERFVQVDKSLARENEGSGIGLSLVKALVELHGGTISVKSKEGYGSEFIIHIPCK 561 >gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 572 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L K+EA +A+ K+ F+ +S+ELR+P+ +IGF LL +++ + +Q+ + Sbjct: 181 RTAAFLKAKDEA-EQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQM---DDEQTDF 236 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 VE I S LL+++NDILD + ++AG +L + L + L EV E +++ Sbjct: 237 VETIRNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASEKELKL 296 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724 + L +V D +L Q+ ++SNA+ F+ G I N D +V Sbjct: 297 DLEYSDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGGVTITATPNSNSDTHSMVRIAVS 356 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I +++ K +F+ F ++ R + G GLGL I + + GG ++I SS + Sbjct: 357 DTGIGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDSSPGEGS 416 Query: 783 TIN 785 T N Sbjct: 417 TFN 419 >gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] Length = 390 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 + PL + + +VT V A R L ++D +K++F+ ++S+E+R+PL I+G Sbjct: 136 VCPLGDKYLLCMCRDVTSRVNALRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVG 195 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 F+ L+ G K+ Y I +S +LL L NDILDL+ +++G ++ + L Sbjct: 196 FSRLVIDP--GHEGDKED-YCNIIEKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYH 252 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 E S K+++ I I D +L + DR R++Q+ +LSNA F+ G Sbjct: 253 ACLEEYDSHRLKVNKGVILILDDVDEEL-CVMGDRMRIMQVLMNLLSNAAKFTPTGEIHF 311 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 R G+ + F VK+ G IP + +F RF + Q G GLGL++ + Sbjct: 312 GYQLR--GNIVQFYVKDTGIGIPANRVAKIFERFGKINNFAQ--GTGLGLTVSRMLVERM 367 Query: 769 GGHVSISSSDEGVTT 783 GG + + S EG+ T Sbjct: 368 GGRIWVRSG-EGIGT 381 >gi|170751185|ref|YP_001757445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657707|gb|ACB26762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 910 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 11/218 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+PL +IGF LL S G L+ +Y E + + L +V+DIL Sbjct: 407 KTEFLSAMSHEIRTPLNAVIGFAGLLAES--GRLDGDLRRYAELAATAGANLRTVVDDIL 464 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D ++V+AG + L+ + L L++ + + + D + V D RL Sbjct: 465 DFSSVEAGAINLDPEPVALRPLVDACLGIVEAPARAKGLDLVAQIDAAVPDRLVCDPGRL 524 Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 QI +L+NA+ F+ +G + + A GD I FSV + G I D + +F RF Sbjct: 525 RQILLNLLNNAVKFTPRGRVTVDLFHEEAGPRGDTIRFSVTDTGIGIAPDRQERLFQRF- 583 Query: 744 SNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778 S A RR G GLGL+I + L GG + + S++ Sbjct: 584 SQADSSIRRAYGGTGLGLAISRRLVELMGGTMGLVSAE 621 >gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 800 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 9/230 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+RA E A R K++F+ H+S+ELR+PL ++GF LL+ L L+ +Q + + Sbjct: 317 AQRARQEAEMANRA----KSAFLAHMSHELRTPLNVMLGFVQLLERDTL--LSDRQRESL 370 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I+ S LL L+ND+L+L+ ++AG ++L+ + L L +++ ++ + + Sbjct: 371 QTINRSGEHLLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQEMFQIRVQNKQLSLT 430 Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728 + L + VAD +L Q+ +L NA+ F+ +G TV + F V + G Sbjct: 431 LELAKDLPPYVVADEGKLRQVLINLLGNALKFTDRGGITVRVGYELIRERLAFVVVDTGR 490 Query: 729 SIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + + +F FV + G GLGL+I F+ L GG + ISS+ Sbjct: 491 GMATAELEQLFEPFVQGCTGLNPQEGTGLGLTISREFVRLMGGEIQISSA 540 >gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1060 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 26/233 (11%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ +++K F+ VS+ELR+PLT I G LL + K + + + + L+ Sbjct: 809 RQIEQMKKDFISVVSHELRTPLTAIHGSLGLLAAGVYDNKPEKGKKMIHIAATQTDRLVR 868 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LVNDILDL +++G ++L + L+ + + + K EN + + VI L FV Sbjct: 869 LVNDILDLGRLESGNLQLVMKSCQTATLMQQAVEVMRPKAEENQVTLSVIP---LDVFVW 925 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------------FIF 721 AD ++Q + +LSNA+ FS ST+++KA + D +F Sbjct: 926 ADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELMSIDDNIKVWQKKTPSLALLPSPYVLF 985 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 V++ G IP D +F +F + + ++ G GLGL+I + I H G + Sbjct: 986 QVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGGTGLGLAICRTIIEQHKGQI 1038 >gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 788 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 133/235 (56%), Gaps = 10/235 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA IK+SF+ ++S+E+R+P+T I+GF +++K + + + S++++ I + LL L Sbjct: 390 KASHIKSSFLANMSHEIRTPMTAILGFAEIMKQR---NDDPEMSRHIDTIRKNGEYLLEL 446 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 +NDILD++ ++A +++ L +LL++VK + + + + + V DG + ++ + Sbjct: 447 INDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGSIPRWIQS 506 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI--FSVKNNGSSIPEDMCKSV 738 D RL QI +LSNA+ F+ +G ++ ++ D + + F V ++G + ++ + Sbjct: 507 DPVRLRQILINLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDVIDSGIGMTDEQISRL 566 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F F+ R+ G GLGL+I + ++ GG +S++S TT + + +K Sbjct: 567 FQPFMQADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFSVTVKTK 621 >gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] Length = 1052 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 +VT E L + +A E+K+ F+ ++S+E+R+P+ IIG + L LKT L Sbjct: 278 DVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTE----L 333 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 KQ Y+ I S+++LL ++NDILD + ++AG + + L+D+L+ V K Sbjct: 334 TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQKA 393 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 E + + D + + D RL QI +++NA+ F+ +G + + D Sbjct: 394 FEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQGEITVHVTRTPHSDQKV 453 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSV++ G + + +F+ F RR G GLGLSI + L GG + + Sbjct: 454 ELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSIQVE 513 Query: 776 S 776 S Sbjct: 514 S 514 >gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 547 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 139/255 (54%), Gaps = 16/255 (6%) Query: 547 DSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +S AER L N+ L + + K F+ ++S+ELR+PLT I+ FT+ L T +G LN+ Sbjct: 289 ESKVAERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQLNA 348 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +Y++ I S LLNL+ND+LDL+ +++G M LN + + + + + V++ + + Sbjct: 349 EQEEYLKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQ 408 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721 NI ++ G +AD +++ Q+ +L NA+ F+ G + + R + + Sbjct: 409 KNIDMQSAITGT-NVIIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLL 467 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSIS 775 +VK++G IP +F+ F ++G R G GLGL++V+ + +H G +++ Sbjct: 468 TVKDSGPGIPAKDRARIFDSF----YQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLE 523 Query: 776 SSDEGVTTINCRIPS 790 S++ + +P+ Sbjct: 524 STEGQGSAFTVYLPA 538 >gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1438 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L E+ + L A K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 852 QARQELEERAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTVKQVEY 911 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M LN L LL+ V+ + + ++ Sbjct: 912 AGIIHSAGSDLLQLINDILDLSKVEAGKMDLNPERFTLRQLLDYVEATFRPMTTQKSLTF 971 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA---------RDNG 717 + + G + D RL Q+ ++SNA+ F+ +GS I AA R G Sbjct: 972 TISTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVELRIEPAADHELPDSVHRGGG 1031 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G I E +++F F R+ G GLGLSI +L GG ++ Sbjct: 1032 VVAFRVKDTGIGIAEQQLETIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGALTAR 1091 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1092 STPGRGSTFTLYLP 1105 >gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 633 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 28/227 (12%) Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI------LLNLV 624 +F+ +S+ELR+PL I+G + LL +++++ Y+++I I LL L+ Sbjct: 391 AFLASMSHELRTPLNGILGLSQLLLE------DAQEAGYLDFIEDLQQINQSGLHLLGLI 444 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 DILD++ ++AG M L T ++ L+ EV +I + +N +++ LG VADR Sbjct: 445 EDILDISKIEAGKMILYPETFDVSLLITEVVNTIQPLIKKNGNSLQIKFSNPLGPMVADR 504 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNNGSSIP 731 +R+ QI +LSNA F+ +G ++L R + +FSV + G + Sbjct: 505 KRVKQILINLLSNAAKFTEQGK-ILLTVNRQVFNETPQPSINSPSTWLVFSVIDTGIGMT 563 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ +F FV ++ G GLGLSI + F + GG++++ S Sbjct: 564 QEQISKIFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGGYITVES 610 >gi|213025313|ref|ZP_03339760.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 517 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 15/259 (5%) Query: 546 TDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 D +RA+ R L++ EA KA I++ F+ ++S+E+R+P+ ++G +LL ++LG Sbjct: 174 ADLLRAQARELSKAREAAEKAAAIRSEFLANMSHEIRTPMNGVVGMAELLGHTELG---E 230 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 +Q +YV+ I S LL L+N+ILDL+ ++AG M L+ +L + + K E Sbjct: 231 EQREYVDTIRNSGEALLGLINNILDLSKLEAGKMILDAIEFDPRSVLEDTVDLLGAKADE 290 Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDF 719 I + ++ ++ S + D RL Q+ ++ NA+ F++ G+ ++ + Sbjct: 291 KLIELTGFAESQVPSKLIGDPSRLRQVLLNLVGNALKFTANGTVRLRVTLMNTSSSEAVL 350 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 FSV++ G I E+ K +F F R+ G GLGLSI + GG + + S Sbjct: 351 RFSVRDTGVGIDEEQQKRLFKPFSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLESE 410 Query: 778 -DEGVT---TINCRIPSKE 792 D+G + ++P K+ Sbjct: 411 RDKGSEFSFALRFKLPEKD 429 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 163/345 (47%), Gaps = 27/345 (7%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR-YYNESDGWDLFAAII 504 G+ V +G I+L NPA ++ L+P N+ Y++E D + L + Sbjct: 212 GIVVIDSNGIIELFNPAAEEMF----GYLAPEVIGYNVNRLMPEPYHSEHDQY-LNNYLT 266 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT------MLTFV----NVTDSVRAERA 554 TS +RK + E+++ + S P+ A + L FV ++T+ AE A Sbjct: 267 TS---QRKIIGIGREVVAKRK-DGSFFPIELAVSEMYEGNALKFVGRIIDITERKAAEFA 322 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E +++ +K+ F+ +S+ELR+PLT ++G LL + + I Sbjct: 323 LIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLPDAEEIADIATDIE 382 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S LL L+ND+LDL+ ++AG M + + + L +V SI HE N+ I+ I Sbjct: 383 DSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAHEKNLTIETEID 442 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 D ++ AD RL QI +L NA+ F+ G + +K F V++ G I E Sbjct: 443 DIEV---FADPIRLKQILLNLLGNAIKFTENG-FIKVKIKPMAHQVCFFVEDCGCGIDEK 498 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F+ F + RR G GLGL+I + + LH G +S+ S Sbjct: 499 DVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQS 543 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 14/236 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L ++ + AD+ K+ F+ ++S+E+R+P+ +IG L LKT ++ KQ Y+ Sbjct: 577 LEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTE----MSPKQRDYLRKA 632 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 ++ LL +++DILD + V+AG ++L +L+++L+ V + K HE + + I Sbjct: 633 GFAADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKI 692 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--FSVKNNG 727 + + D RL QI + +NA+ F+ +G + R+N + FSV++NG Sbjct: 693 APEVPAQLIGDPLRLGQILINLCNNAVKFTGQGEIFVFIEQLDCRENNRVMLRFSVRDNG 752 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780 + + +F F RR G GLGL+I + + L GG + S D+G Sbjct: 753 IGMTPEQLDKLFTPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKG 808 >gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus] Length = 2013 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 24/235 (10%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S LN++Q ++V I AS+ Sbjct: 1283 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNTEQLEHVNIIKASTDS 1339 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-----SIATKMHENNIRIKVISD 674 LLNL+NDILDL+ V+AG++KL+ + L LL EV +I + N + + + Sbjct: 1340 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYL----VDE 1395 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVK 724 G D+ R+ Q+ ++ NA+ F+ G I + ++N I F V Sbjct: 1396 GVPAEVKGDKFRIRQVLLNVVGNAIKFTEHGEIFIRCKLQPSDRSRPLKENETMIRFEVV 1455 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + G + K +F RF + + Q G GLGL+I F+ LHGG + S+ Sbjct: 1456 DTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSA 1510 >gi|53725083|ref|YP_102612.1| sensor histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121601132|ref|YP_992734.1| sensor histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126450386|ref|YP_001080251.1| sensor histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|254199546|ref|ZP_04905912.1| sensor histidine kinase/response regulator [Burkholderia mallei FMH] gi|52428506|gb|AAU49099.1| sensor histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121229942|gb|ABM52460.1| sensor histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126243256|gb|ABO06349.1| sensor histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|147749142|gb|EDK56216.1| sensor histidine kinase/response regulator [Burkholderia mallei FMH] Length = 654 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 32 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 85 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 144 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 204 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 205 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263 Query: 783 TINCRI 788 T RI Sbjct: 264 TATARI 269 >gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 907 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 131/263 (49%), Gaps = 12/263 (4%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLK 595 Q L + + ++AE AL E E +AD+ K F+ ++S+E R+P+ IIG ++ +LK Sbjct: 348 QNALLNAEIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILK 407 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L++ Q ++ ++ ++ LL+L+N ILD + ++G L S +L+ +V Sbjct: 408 T----ELSAPQRNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVH 463 Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710 + + + +++ ++ + D ++ QI ++SNA+ F+ G+ I Sbjct: 464 EMFLSAAAAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDTGNITITCKAF 523 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 A D FSV + G I ++ ++F+ F ++ G GLGLSI + ++ Sbjct: 524 PAPSGRADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMM 583 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG +++ S+ +T +P K Sbjct: 584 GGSITVRSAPRQGSTFTVCLPLK 606 >gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1] gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1] Length = 1044 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 5/239 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V++TD RA+ + + + E K+ F+ VS+E+R+P+ ++G DLL+ + Sbjct: 516 VMVDITDVYRAKEEVQKARDLAVSTAENKSRFLAIVSHEIRTPMNGLLGMLDLLRENN-- 573 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 LN +Q ++ S LL+LV+D++D ++AG M+ +Y +++LLN +A Sbjct: 574 GLNDEQKDTLQVAWQSGRNLLSLVDDVMDFNRIEAGEMQFHYERTNIHELLNAALTMVAA 633 Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 ++ + + ++ + L V D ++ +I + +LSNA+ F+ GS ++ Sbjct: 634 DAYKRGLDVGLVLESNLPELVVCDAVKVRRILANLLSNAVKFTQHGSVLLWAEMLPGNRL 693 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 VK+ G I + +F FV RR G GLGL + + + G + + S Sbjct: 694 YVEVKDTGVGIGAQEQQQLFQAFVLGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGVKS 752 >gi|153954881|ref|YP_001395646.1| sensory transduction histidine kinase [Clostridium kluyveri DSM 555] gi|146347739|gb|EDK34275.1| Predicted sensory transduction histidine kinase [Clostridium kluyveri DSM 555] Length = 663 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 13/246 (5%) Query: 555 LTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYV 610 L+ + EA + + + ++++ ++ VS++LRSPL I G + +L+ N+K+ + Sbjct: 415 LSSQQEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLI 474 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIR 668 I + L+ LV ++L + D G + + + ++ ++++E Q S K H R Sbjct: 475 G-IYNDTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYH----R 529 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +KV K+ D + Q+ + NA+ FS K S V +K ++ D IF V +NG+ Sbjct: 530 VKVNIPEKIIMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGN 589 Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPE + +F+RF +N + RRGVGLGL+I +S + LHGG ++ + EG Sbjct: 590 GIPEKILPYIFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKF 649 Query: 787 RIPSKE 792 IP ++ Sbjct: 650 NIPKEK 655 >gi|126730029|ref|ZP_01745841.1| sensory box sensor histidine kinase/response regulator [Sagittula stellata E-37] gi|126709409|gb|EBA08463.1| sensory box sensor histidine kinase/response regulator [Sagittula stellata E-37] Length = 653 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 9/216 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+PL +IG +DLL + L ++K ++YV I +ST LL ++ND+LD + Sbjct: 245 FLATMSHEIRTPLNAVIGMSDLLAANDL---DAKSAEYVRTIRGASTSLLQVINDVLDFS 301 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690 +DA M ++ + + + E + I + DG L AD RL QI Sbjct: 302 RLDADQMSFESLPFAPSESIAAAARLLTPLASEKGLPIVLADDGSLPLRASADEGRLRQI 361 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 ++ NA+ F++ G + A GD + V + G +P + +++F F Sbjct: 362 LVNLIGNAIKFTAAGEIRVTARAEPEGDGWRLVVLVSDTGIGVPPNRAEAIFEVFQQADA 421 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 RR G GLGL I + GG + + + GV Sbjct: 422 ATTRRYGGTGLGLPISRALAQRLGGDLRLVPAQRGV 457 >gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC 19061] gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++V+ V+ E++L E A +A++ K+ F+ VS+ELR+PL IIG +L+++ L Sbjct: 422 LIDVSTRVKMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELIQSHLLP- 480 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + ++ + ++ SS++LL +++DILD + +++ +K+ ++++ V + Sbjct: 481 --PESTRLLATMNNSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKEVISHVISNYLPL 538 Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + + + + D RL QI S +L+NA+ F++ G V+++ +G Sbjct: 539 IAKKALGLYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTASG-CVVIEIVSKHGYLY 597 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 FS+K+ G I + + +F F +S +G GLGL+I E INL G + S Sbjct: 598 FSIKDTGLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLINLMDGDIEFISQK 657 Query: 779 EGVTTINCRIP 789 + + RIP Sbjct: 658 YVGSIFSIRIP 668 >gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1182 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL + SL+ Q Y E I + Sbjct: 801 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 857 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + L+ EVK +A E +R + G L Sbjct: 858 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVKALMAPLAQERGLRFS-LEIGLL 916 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 917 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 976 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGH+ + S Sbjct: 977 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1021 >gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium MLMS-1] Length = 876 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 35/268 (13%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N L + K+ F+ +S+E+R+PL IIGF++L L + QY+E I Sbjct: 446 LLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIK 501 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+N ILDLA +++G ++L + + + + A + + D Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-------------- 718 + G V D RL Q+ ++ NA+ F+ +G + ++ A D+ D Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEIAVSVRPAADDADRRPTVGAGRAEVAP 621 Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINL 767 F+V+++GS I + +FNRF G GLGL+I S + L Sbjct: 622 PAASDATSGLLHFTVRDSGSGIAAEQQGRIFNRFAQGEGAASPHGGHGLGLAIAASLVEL 681 Query: 768 HGGHVSISS-SDEGVT---TINCRIPSK 791 GG + + S EG + TI R+P Sbjct: 682 MGGEIWLESRPGEGSSFHFTIAYRLPPP 709 >gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1817 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 14/234 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + A A+ K+ F+ +S+E+R+P+ +IG T LL ++L S+Q +VE + Sbjct: 1125 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL---TSQQRDFVETV 1181 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL+++NDILD + +++G ++L + + +V +A K + +I + + Sbjct: 1182 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1241 Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVK 724 ++ +A D RL QI + +L+NA+ F+ +G V+ + ++ + IF++K Sbjct: 1242 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIK 1301 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G I + +F FV R+ G GLGL I + + GG++ + S Sbjct: 1302 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1355 >gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 751 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 125/240 (52%), Gaps = 11/240 (4%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ +A+RA + E A + K+ F+ +S+++R+P+ I+G T L++ K Sbjct: 347 TELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRHD--AGNKDK 404 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +YV+ I S+ LL ++ND+LD++ ++AG +YS + + + E++ + E Sbjct: 405 VIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMFCPQTEEK 464 Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGD 718 + + + + + +V +D L+QIFS +LSNA+ ++ KG + + Sbjct: 465 HQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECETKSSAYAK 524 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F+V +NG + ED +F+ F ++ + +G GLG++I ++ I GG + + S Sbjct: 525 YHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584 >gi|289620411|emb|CBI53269.1| putative histidine kinase group protein [Sordaria macrospora] Length = 2114 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 21/224 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ L+ Sbjct: 1420 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1476 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKLNY L+ +V + ++T + + + + + ++V Sbjct: 1477 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1536 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFI-------FSVKNNGS 728 D+ R+ Q+ ++ NA+ F+++G V++ D+G FS+ + G Sbjct: 1537 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVP---DDGPLHENEIMLEFSIIDTGR 1593 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 ++ + +F F + + Q G GLGL I + LHGG Sbjct: 1594 GFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1637 >gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 965 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 134/243 (55%), Gaps = 12/243 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD ++ERAL+ ++ A K F+ ++S+E+R+PL+ IIG T LL+T++ L+ Sbjct: 446 DITDWKQSERALSLAHQQAEAARLAKTEFLANISHEVRTPLSGIIGMTSLLRTTE---LD 502 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q+ YV + AS + LLNL+ND+LD++ ++AG + L+ L + Sbjct: 503 AEQADYVATVEASGSTLLNLINDLLDISRLEAGRIALDEQMFELMPCVTHTVNLARPMAR 562 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG 717 E + + + I++G + D RL Q+ S +++NA+ F+ +G V++K + D Sbjct: 563 EKGLALDLDIAEGVPAFVLGDELRLSQVLSNLVTNALKFTEQGR-VLVKVSPCGYEDDRI 621 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+V + G IPED + +F RF RR G GLGL+I + +N GG + + Sbjct: 622 RLRFAVHDTGIGIPEDKREVLFERFTQVDTSTTRRYGGAGLGLAISQHLVNAMGGRIELQ 681 Query: 776 SSD 778 S + Sbjct: 682 SRE 684 >gi|304317396|ref|YP_003852541.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778898|gb|ADL69457.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 607 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 129/258 (50%), Gaps = 21/258 (8%) Query: 522 SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 S+ + +I P+ N ++ +L F N+T+ ++ D++K+ F+ + Sbjct: 344 SNKYYDVTISPIENYKSEISDILLVFHNITE--------------FKELDQVKDDFISII 389 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E ++PLT+I+ T ++ K+G++N KQ + I L LVN++++L +++G Sbjct: 390 SHEFKTPLTSIMMGTSIILEEKIGTINEKQKSTLLAIEEEGEKLTELVNELIELTKIESG 449 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 N+ + ++ + + + + + D L AD +++ + + +++ Sbjct: 450 KEVYNFKCCSMFGIVENTIKPLYNIASDKGVNLSHSVDEDLPCVYADPEKISWVLNNLIT 509 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 NA+ ++ G + + A+ DN SVK+ G IP++ +F++F N + +G Sbjct: 510 NALKYTDAGDDISISASIDNNMMQISVKDTGVGIPKEYKDKIFDKFFHTKNGDDFEIKGT 569 Query: 755 GLGLSIVESFINLHGGHV 772 GLGL++V+ + HGG V Sbjct: 570 GLGLAVVKEIVEAHGGKV 587 >gi|228946855|ref|ZP_04109157.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812842|gb|EEM59161.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 448 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I I+ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDIARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|18252319|gb|AAL66191.1|AF386509_1 putative ethylene receptor [Pyrus communis] Length = 741 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ + Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 L +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + EV I Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNMIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + ++ + + +D + + + D +RL+QI ++ NA+ FS +GS I + Sbjct: 432 PVASIKRLSVALNIAADLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ ++F +F + G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574 >gi|42782325|ref|NP_979572.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42738250|gb|AAS42180.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 458 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + +L +L LA++D L L + +V + K E +I ++ + D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDIVIK 347 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ + Sbjct: 348 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRI 404 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457 >gi|260063627|ref|YP_003196707.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501] gi|88783072|gb|EAR14245.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501] Length = 734 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 10/232 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L +A +A E K +F+ VS+ELR+PL + G T LL + + +Q ++++ Sbjct: 344 RELHAARDAAVQAMEAKTNFLSTVSHELRTPLYAVTGLTHLLLEE---NPSKEQQEHLKA 400 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S LLN +NDIL + +DA +++ L +L EV S+ E+ + + Sbjct: 401 LKFSGDYLLNFINDILQINKIDADKLEMLEIEFNLKKILTEVMNSLQQTAKESKTEMILD 460 Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNG 727 D ++ S ++D +L Q+F ++ NA+ F+ G ++L + D F V++ G Sbjct: 461 FDPEIPSHLMSDPVKLSQVFMNLMGNALKFTKNGEVLVLARLVRKEDDRARVYFEVRDTG 520 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E+ K++F+ F + + R G GLGL+IV+S + L G + + S+ Sbjct: 521 IGISEEKQKTIFDSFEQGSIQINREYGGTGLGLTIVKSLLGLFGSTIQLEST 572 >gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 1054 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 13/226 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + +A++ K+ F+ ++S+E+R+PL I+GFT LLK + L+ Q +++ I SS Sbjct: 371 ETIVEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNT---PLSPDQQEFISVIENSSDN 427 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678 LL++VNDILDL+ ++A ++L + + +S K E NI + D + Sbjct: 428 LLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK 487 Query: 679 SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGD----FIFSVKNNGSSIPED 733 + V D ++ Q+ ++SNA+ F+ S G +L + D F+V++ G I E+ Sbjct: 488 TLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEE 547 Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 +F F S A G R G GLGL+I + GG + I S Sbjct: 548 QKAKIFGAF-SQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIES 592 >gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS 513.88] Length = 2354 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1872 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1931 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1932 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1988 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711 +++ + + D V D RL QIF +LSN+ F+ KGS TV K Sbjct: 1989 VRALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2048 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 +R+ + SV + G I E+ +F F S A R G GLGLSI ++ I Sbjct: 2049 VSREGKGRVRLECSVSDTGIGISEEQKSRLFRPF-SQADNSTARSYGGSGLGLSICKAII 2107 Query: 766 -NLHGGHVSISSSDEGVTTI 784 ++ GG + + S+ TT+ Sbjct: 2108 EDVLGGAIWLDSTSGVGTTV 2127 >gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492] Length = 623 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E +AD +K++F+ ++S+E+R+PL IIGF+ LL + Sbjct: 379 DITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 435 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ I+ ++ +LL L+ND+LDL+ ++AG ++L+ +L+ E + + Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 490 Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E N+ +K+ + G D R+ QI + +SNA+ + +G + +G Sbjct: 491 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDGIR 550 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 I SV + G IP D +F RF Q G GLGLSI +S + G +++ S+ Sbjct: 551 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 607 Query: 780 GVTTINCRIPSK 791 +T +P + Sbjct: 608 VGSTFTVELPCR 619 >gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] Length = 1328 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ + E L E + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q +Y+ I+ S+ LL ++NDILD + ++AG + + L+++ + I+ K Sbjct: 638 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDN 716 E I + D ++ V D RL Q+ + NA+ F+ KG ++ + D+ Sbjct: 697 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 756 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 FSVK+ G I ++ +FN F S A R G GLGLSI + + L GG +S Sbjct: 757 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 815 Query: 774 ISSS 777 +SS+ Sbjct: 816 VSSA 819 >gi|324113624|gb|EGC07599.1| TMAO reductase sytem sensor TorS [Escherichia fergusonii B253] Length = 902 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|258592063|emb|CBE68368.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 316 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 24/257 (9%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R + EA R+ K++F+ ++S+ELR+PL++IIGFT+LL++ G+LN KQ+ +V Sbjct: 62 RGIERAEEATRQ----KSAFLANISHELRTPLSSIIGFTELLQSGAFGTLNEKQAHFVGN 117 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I SS LL L+ND+LDL+ ++AG + + VL +++ ++ + + + I+V Sbjct: 118 ILLSSRHLLTLLNDLLDLSKIEAGKLIIEPEPFVLQEVIETTVGTLRPQADQKHQNIEVT 177 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------ARDNG 717 + + AD R QI +LSNA+ FS KG +++ + R +G Sbjct: 178 VEDGISLINADPTRFKQILYNLLSNAIKFSHKGGRILVTSRVVPSVLLTTEHTGPERTSG 237 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 I +V + G I + +F RF + +G GLGL++ + + LHGG + Sbjct: 238 KKIVEITVADTGIGISAEDLSKLFQRFTQLQAPTVKHYQGTGLGLALTKYLVELHGGSIH 297 Query: 774 ISSSDEGV-TTINCRIP 789 S EG T R+P Sbjct: 298 AHSDGEGRGATFAVRLP 314 >gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 685 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 15/253 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 ++TD +R EK A+ A + K F+ H+S+E+R+PL IIG T L L++ G L Sbjct: 290 DITDILRTRH---EKQSAV-IASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQSGPDGEL 345 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Y+ I +SST LL ++ND+LDL+ ++A M+L ++ ++L+ V S+ M Sbjct: 346 K----EYLLKIRSSSTNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAM 401 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDF 719 + + + + D D RL Q+ ++SNA+ F+++G I + D+GD+ Sbjct: 402 EQKGLEYQCHLDDDVPLKLWGDSLRLKQVLLNLMSNAVKFTARGKVGLRIHRQQDDDGDW 461 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + F V + G I + + +F+ + RR G GLGLSI + L G + S Sbjct: 462 LHFEVSDTGMGISHEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCES 521 Query: 777 SDEGVTTINCRIP 789 + + RIP Sbjct: 522 RLGEGSRFHLRIP 534 >gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 426 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 18/245 (7%) Query: 557 EKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 ++ EALR+ E+K+ F+ VS+E R+PLT I+ +++L+ +++ + Sbjct: 180 QQAEALRQELAEQHELSELKSRFLSTVSHEFRTPLTTILSSSEMLERYSDRLSPERKAVH 239 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----E 664 + IS S + L+ DIL + DA KL ++ V+N L+E Q++ +H + Sbjct: 240 FQKISQSVDYMTQLLEDILIYSKADAE--KLEFNPTVVN--LSEFCQTLVEDLHLEAANK 295 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 I++K D G+F D + L QI S +L+NA+ +S KG V + R+ I ++ Sbjct: 296 ERIQLKCNDDDICGNF--DPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILLIR 353 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + G IP + +F F + G G GLGL+IV+ ++LH G +S+ S + T Sbjct: 354 DRGIGIPANDQVHLFEPFHRAQNTGTINGTGLGLAIVKKAVDLHQGMISVQSEIDVGTIF 413 Query: 785 NCRIP 789 +P Sbjct: 414 TVNLP 418 >gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1] gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1] Length = 568 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E ++ F+ +++ELR+PL ++G +LL + L Q + +S Sbjct: 186 LVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADT---DLKGAQQELHSNLS 242 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S +L +++ND+LD + +DAG+++L ST +L + + K E I + +D Sbjct: 243 QSGQLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFTICAD 302 Query: 675 G-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 G +F D +R+ QIF ++ NA+ F+ +GS + +++ G FSV + G I + Sbjct: 303 GFSNKNFKGDLERITQIFVNLIGNAIKFTDEGSVKVTLTSQEGG-IGFSVTDTGIGISQT 361 Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 K +F F+ A R R G GLGL+I + + L GG +S++S TT +P Sbjct: 362 AQKKLFQPFI-QADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYGFLP 419 >gi|302768056|ref|XP_002967448.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii] gi|300165439|gb|EFJ32047.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii] Length = 628 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 10/225 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD+ K+ F+ ++S+E+R+PL II T+L ++ +++Q +Y+E + S+ LL ++ Sbjct: 9 ADKAKSEFLANMSHEIRTPLNGIINCTELCLDTQT---STEQQEYLELVRFSAKHLLRII 65 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 DILD + ++AG +++ L D L +A + H+ N+ + +D + V D Sbjct: 66 TDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARAHKKNLELAWSADADVPDQIVGD 125 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+F ++ N + F+ G V+L ++ + +FSV + G IP++ +F Sbjct: 126 PGRLFQVFVNLIGNGIKFTEDGEVVVLAKLQNKTKETVELLFSVNDTGVGIPKNKQSLLF 185 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 F V ++ G GLGL I GG + + S +G T Sbjct: 186 QAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGRMWVESEGQGST 230 >gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 737 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+PL IIG+TD+L L +Q + +E I + LL +VNDIL Sbjct: 247 KTDFLASMSHEIRTPLNGIIGYTDVLLDQ---DLKPEQRRLLERIQFAGAALLTVVNDIL 303 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D + ++AG + L L L++ IA + + V D + + + D RL Sbjct: 304 DFSKIEAGQVALEPRPFSLVALVSNTVSIIAEAAQRKGLALTVDVDPHMPAAVIGDEDRL 363 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+ +L+NA+ F+ +GS + D+ FSV + G IP+D + +F+RF Sbjct: 364 RQVLLNLLNNALKFTHEGSITLQVRCEDSLSDCQWICFSVTDTGIGIPKDQHEHLFHRFY 423 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 H R G GLGL+I + I+L GG + + S + Sbjct: 424 QVQHSSTREIGGTGLGLAISKRLISLMGGEIGLESEE 460 >gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297] gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297] Length = 589 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A + K+ F+ +S+ELR+PL IIG L++ + S ++ ++ SS LL Sbjct: 218 QQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEA-----EQPSPWLNSLAVSSEALLT 272 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--- 679 +ND+LD +++++G + + + L ++ +++ + + + ++V+ S Sbjct: 273 QINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWSSHCW 332 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD ++ QI +LSNA F+ G V+ +++G F + V + G IP D +++F Sbjct: 333 VMADGHKIRQILLNLLSNAFKFTEHGQIVLAVQKQEDGQFQWRVSDTGIGIPADKLEAIF 392 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F QR+ G GLGL+I L GG ++++S T +P Sbjct: 393 QSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLP 444 >gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula baltica WH47] Length = 843 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 35/262 (13%) Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++TD R+E AL +EA+R AD K+ F+ ++S+E+R+P+ +IG DLL +KL Sbjct: 249 DITDLKRSEAAL---HEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL- 304 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + Q YV+ I SS LL L+NDILD + ++A ++L L + +S + Sbjct: 305 --DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSF 362 Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------- 711 K E + + + IS + D R+ Q+ + ++ NA+ F+ G + Sbjct: 363 KASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREER 422 Query: 712 AARD------------NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 A RD D + SV ++G IP +V N F RR G Sbjct: 423 ADRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGT 482 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGLSI + L GG + + S Sbjct: 483 GLGLSISRQLVELMGGELHLQS 504 >gi|254180087|ref|ZP_04886686.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] gi|184210627|gb|EDU07670.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] Length = 693 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1000 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 127/254 (50%), Gaps = 21/254 (8%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E L + EA A++ K F+ ++S+E+R+P+ ++G ++L + Sbjct: 417 TLQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLET--- 473 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL +Q +Y++ AS+ LL++++D+LD + ++ ++L + L L++ + ++ Sbjct: 474 SLTDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSG 533 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAAR 714 K +++ + L S F+ D RL Q+ IL NA+ F+ KG V + + R Sbjct: 534 KAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKKGEIALSVEVYMPSER 593 Query: 715 DNG----DF------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 ++G DF +F VK+ G IP + +F+ F+ R G GLGL+I Sbjct: 594 NSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISS 653 Query: 763 SFINLHGGHVSISS 776 + L G + + S Sbjct: 654 QLVELMEGRIWVES 667 >gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides sp. JS614] Length = 712 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTIL 620 L +A ++K+ FV VS+ELR+PLT+++G +LL + L + Q + V+ +A L Sbjct: 480 LMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDDLTDEVAAQLRVVQRNAARLQAL 539 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ + I +A G ++LN + L +++E +++ ++++ I+V + G L Sbjct: 540 LSDLLLIGQIAD---GTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRVEAPGTL-PA 595 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 VAD QRL Q+ +LSNA+ + G +V ++ R + V + G I + + VF Sbjct: 596 VADGQRLRQVLDNLLSNAIKYGRAGCSVTVELRRADDGVELLVADTGMGIADHDREHVFG 655 Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 RF A R G GLGLSIV S + HGG V++ S +T +P Sbjct: 656 RFFRGGEAVRQHLPGTGLGLSIVASIVAAHGGTVTVESELGRGSTFRVALPG 707 >gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 26/245 (10%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 TML F +VT + D +K V VS+ELR+PLT+IIGFT+LL+ Sbjct: 406 TMLVFRDVTHET--------------EVDRLKTELVSTVSHELRTPLTSIIGFTELLRFR 451 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 KL + S+ +Y+ I + L +L++++LD+ +++G + L+ +L +Q+ Sbjct: 452 KLSAERSE--KYLGMIHQETLRLEDLISNLLDVQRMESGQQTYHNEPERLSAIL---EQA 506 Query: 658 IATKMHENNIRIKVIS-DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 IA +H+ + + I+ D +V DR RL Q+F +L NA+ +S +G + ++ A + Sbjct: 507 IA--VHQGSSQHHHITFDCTEDVYVYGDRTRLNQLFMNLLHNAVKYSPRGGEINVRVACE 564 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D+I S++++G IP+ +F++F V N+ + G GLGL+I + HGG + Sbjct: 565 RPDWIDISIEDHGIGIPQTALPKLFDKFYRVDNSASRKIGGTGLGLAICKEIAEGHGGTI 624 Query: 773 SISSS 777 +S+ Sbjct: 625 HATSN 629 >gi|324327182|gb|ADY22442.1| histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIV 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ + +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457 >gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1484 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 18/248 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ L EK L A + K+ F+ ++S+ELR+PL +++ LL + G L+ ++ Q+ Sbjct: 927 RSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPEGRLSGQEVQF 986 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S + LL L+NDILDL+ ++AG M + + L +L+ V + + + Sbjct: 987 AATIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLVKILDYVNATFRPLAVDRRLSF 1046 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 ++ + + +D QRL QI +LSNA+ F+S G V L+ R G Sbjct: 1047 EIAVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VTLRVERTPGAEFEEEALRSA 1105 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V + G IP + +F F + R+ G GLGLSI + GG + Sbjct: 1106 DAVIAFAVTDTGIGIPPEKLPVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRI- 1164 Query: 774 ISSSDEGV 781 ++ S+ GV Sbjct: 1165 VAESELGV 1172 >gi|304312238|ref|YP_003811836.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797971|emb|CBL46193.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 939 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 127/247 (51%), Gaps = 19/247 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +A KN + +N F+ +S+E+R+P+ I+G T+LL+ + L + Q+ Y Sbjct: 406 RQAQASHLKNAIAQAEIRARNEFLTQLSHEIRTPMNGILGMTELLEETPLSPI---QNDY 462 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I+AS + LL +++DILD + ++ G M L+ S L +LN+ + + E +I++ Sbjct: 463 VKTITASGSSLLGILDDILDYSRIETGKMALDISIFELATVLNDCLEVFQPRAQEKSIQL 522 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724 ++ V D R+ Q+ + ++SNA+ F+ +G V+L + D + F V+ Sbjct: 523 NRLTSNDTPVHVKGDPIRIRQVLAHLISNAIRFTEQGE-VLLTVSYDLDKTSPHIRFEVR 581 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP+ + + + GQ+ G GLGL+I + + GG ++ +S + Sbjct: 582 DTGVGIPKQRLRQLLD--------GQQSGDKSGLGLTIASQLVRMMGGRLNATSEPGKGS 633 Query: 783 TINCRIP 789 T IP Sbjct: 634 TFWFSIP 640 >gi|218288606|ref|ZP_03492883.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] gi|218241263|gb|EED08438.1| integral membrane sensor signal transduction histidine kinase [Alicyclobacillus acidocaldarius LAA1] Length = 463 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 11/244 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY 609 A RAL +R++ E + FV H S+ELR+PL + + + + L+ S+ Sbjct: 205 ASRAL----RPIRRSFEEQRRFVAHASHELRTPLAVMRLQIDRMFRHPAETILD--MSEV 258 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + ++ ++ L LVND+L LA D G L ++ L + E A E ++ + Sbjct: 259 IASLARETSRLQRLVNDLLTLAKADEGETVLRLRSVDLATIAREAALRFAPLAEEKSVEL 318 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +V VAD RLL++ S ++ NA+ F+ G V ++A I +V++ G Sbjct: 319 RV--SAAETPIVADPDRLLELLSILVDNAIAFTPSGGWVEMEARLSGSTAILAVRDTGRG 376 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV-TTINCR 787 IP + VF+RF RG GLGLSI + +HGG + I S G T + R Sbjct: 377 IPREHLPRVFDRFYQVDPSRSTRGAGLGLSIAKWIAEVHGGQIRILSPGSHGAGTEVEVR 436 Query: 788 IPSK 791 +P + Sbjct: 437 LPRR 440 >gi|189466804|ref|ZP_03015589.1| hypothetical protein BACINT_03180 [Bacteroides intestinalis DSM 17393] gi|189435068|gb|EDV04053.1| hypothetical protein BACINT_03180 [Bacteroides intestinalis DSM 17393] Length = 877 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++ + L + + L +A K F +VS++ R+PLT I + L K SL + Q Sbjct: 350 IQQKEQLEQLSRELEEATHAKLVFFTNVSHDFRTPLTLIADPVNQLLADK--SLGERPHQ 407 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHEN 665 +E + + ILL LVN ILD V+ G M+L+ DLL+ + S + + Sbjct: 408 LLELMKKNVNILLRLVNQILDFRKVENGRMELHLEPF---DLLSSFRGWNDSFRMALLKK 464 Query: 666 NIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +I +V D +AD +++ +I+ +LSNA+ ++ + +I++ + +F FSV Sbjct: 465 HISFFFEVTPDMDF-RMMADSEKMERIYFNLLSNAVKYTPENGKIIVRLEAEATNFRFSV 523 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 N+GS I ++F RF G + G G+GL++V +F+ +HGG ++ S ++G T Sbjct: 524 FNSGSHISPKEVDAIFERFYQID--GHQAGTGIGLALVRAFVEMHGGQITAHSDEKGAT 580 >gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1340 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 15/264 (5%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 PN L ++VT+ + E L + EA + + K F+ ++S+E+R+P+ IIG + L Sbjct: 567 PNGVVGL-LLDVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHL 625 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + LN KQ YV I ++ LL ++NDILD + ++AG + L+++L+ Sbjct: 626 ALNA---DLNPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDN 682 Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709 + IA K E + D + + V D R+ Q+ + NA+ F+ G V+ Sbjct: 683 LTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVVGVK 742 Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 L + D + F+V+++G + ++ +F F R+ G GLGL+I + + Sbjct: 743 LLNKSEDGLNLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVE 802 Query: 767 LHGGHVSISSSD-EGVT---TINC 786 + GG + ++S + +G T T+NC Sbjct: 803 IMGGKIWVTSDEGQGSTFSFTLNC 826 >gi|16127201|ref|NP_421765.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236002|ref|YP_002518439.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424601|gb|AAK24933.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965175|gb|ACL96531.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 713 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 11/282 (3%) Query: 516 GTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574 G L LS +S+ + I P T+ +F++VT+ E L + E +A +K+ FV Sbjct: 287 GALRWLSVNSLPIFDKIGEPPNLTVTSFIDVTELRERETELRDALELAERASRVKSQFVA 346 Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 +VS+E+R+PL +I L+ S +L +Q + VE I S T L ++++ +LDLA ++ Sbjct: 347 NVSHEIRTPLNGVIALASALRQS---ALTDRQREMVEIIVESGTTLESILSALLDLAKIE 403 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693 A M+L + L DL+ K + V G+ + D Q++ QI Sbjct: 404 AERMELEIVSFGLEDLVRSSTDLFKIKADNKGLGFDVSVIAPPGARYRGDAQKIRQILWN 463 Query: 694 ILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 +L+NA+ F+ G S + A + V++ G + +M +F F+ Sbjct: 464 LLANAIKFTDAGEIAVSVTVEGADPAAQTLLIEVRDTGVGLSPEMEHVLFEPFIQGDASA 523 Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + + GG + + E + +P Sbjct: 524 TRRFGGTGLGLTICRALARMMGGDIEALARAERGSVFRVHVP 565 >gi|146297007|ref|YP_001180778.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410583|gb|ABP67587.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 467 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L + ++ SF+ +VS+ELRSPLT+I GF + + + + K+ Y+ + Sbjct: 238 EKLENLEMMRKSFISNVSHELRSPLTSIRGFIEGILDRTIP--DEKRDFYLNLVREEVIK 295 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L NL+N +L+L+ ++ G + LN ST + ++ E ++ E I + + + L Sbjct: 296 LNNLINQLLELSRLEWGKINLNLSTFKIYSVIAEELIKFEKRIEEKKIEVFLEVNENL-M 354 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 ADR + ++ +L NA+ ++ G + + + +NG ++++ G IPE + K ++ Sbjct: 355 VKADRDLISRVVHNLLDNAIKYNKVGGKIYIYSEVENGKAYITIQDTGIGIPEKLQKLIW 414 Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 RF + R +GVGLGLSIV+ I LH ++ + S+EGV T Sbjct: 415 ERFYKVDESRSLEKGVGLGLSIVKEIIKLHKQNIWV-ESEEGVGT 458 >gi|320178565|gb|EFW53530.1| Sensor protein torS [Shigella boydii ATCC 9905] Length = 904 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 623 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E +AD +K++F+ ++S+E+R+PL IIGF+ LL + Sbjct: 379 DITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 435 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ I+ ++ +LL L+ND+LDL+ ++AG ++L+ +L+ E + + Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 490 Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E N+ +K+ + G D R+ QI + +SNA+ + +G + +G Sbjct: 491 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDGIR 550 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 I SV + G IP D +F RF Q G GLGLSI +S + G +++ S+ Sbjct: 551 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 607 Query: 780 GVTTINCRIPSK 791 +T +P + Sbjct: 608 VGSTFTVELPCR 619 >gi|300812269|ref|ZP_07092705.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496689|gb|EFK31775.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 399 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623 ++ K+ + +VS+++R+PLT+IIG+ LLK G++ S++ +Y+ + + +L Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ND+ + T+ + KLN + I + ++ +V + + I V + AD Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 ++L+++++ ++SNA+ +++ S + L A N + + V+NNG IP+D K +F+RF Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V ++ + G GLGLSIV+ + LHGG + S+ + Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGGVELHGGTIRCESNKD 379 >gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1444 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 911 QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 968 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 969 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1088 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + I+LH G + S + Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1128 >gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 694 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 21/265 (7%) Query: 544 NVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++ D +R + + +++EA L +A++ K+ F+ +VS+E+R+PL I+G +++ G Sbjct: 180 DLNDELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIVR----GKS 235 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ + +E I LL L+NDILDL+ + AG + L+ + L +LL ++ S ++ Sbjct: 236 PAEMDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELLEALEGSYRSEA 295 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 + + + ++ D RL Q+ S +L NA+ F+S G ++ +K+ R +GD + Sbjct: 296 KRKGLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVKSLRSDGDKL 355 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSV + G IP ++ +F F R+ G GLGL+I + GG +S+ Sbjct: 356 TLSFSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVRAMGGDISV- 414 Query: 776 SSDEG--------VTTINCRIPSKE 792 S+ G V I C P E Sbjct: 415 ESERGRGSTFSLDVEVIPCDPPVPE 439 >gi|17549841|ref|NP_523181.1| capsular synthesis two-component sensor kinase and response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432097|emb|CAD18773.1| probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 1098 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L V++ + E L E + +A+ K+ F+ V +E+R+PL +G +LL S Sbjct: 485 LLGLVDMNERKANEILLMEAKQTADEANRAKSMFLAIVGHEIRTPLHGAMGHLELLARS- 543 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +L+ +Q ++V+ S S LL LVND+LD ++A ++++ + N++L +S Sbjct: 544 --ALSLEQREWVDMTSRSFDALLTLVNDLLDSTKLEANALQISPVPMCPNEVLERCARSF 601 Query: 659 ATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RD 715 + + + I+D D QRL QI +LSNA F+ +G+ I R+ Sbjct: 602 GAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITIASRCLKRE 661 Query: 716 NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 +G F V + G IP M ++FN RR G GLGL + + +L GG Sbjct: 662 DGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHLMGGR 721 Query: 772 VSISS 776 +S+ S Sbjct: 722 ISVRS 726 >gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1645 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 32/238 (13%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL I+GFT ++ K +L+ Q + I+ + LL+L+ND+L Sbjct: 1153 KSEFLANMSHELRTPLNAILGFTQIMSHDK--TLSKDNQQNLTIINRAGEHLLDLINDVL 1210 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 +++ ++AG LN ++ L LL+ +++ + + + +K + + AD +L Sbjct: 1211 EMSKIEAGRTTLNINSFDLIHLLDNLQEMMQGRATAKGLHLKFEYAPNIAQHIQADESKL 1270 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------------------------I 720 Q+ IL NA+ F+ GS +IL+ GD+ I Sbjct: 1271 RQVLLNILGNAIKFTETGS-IILRVKMGTGDWGLGTEEDTKTHLSIPNTQSPITNPQSLI 1329 Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F +++ G I +D +F F + A R ++G GLGL+I ++ L GG +S+SS+ Sbjct: 1330 FEIQDTGIGICDDEVCVLFEAFGQTEAGRKSQQGTGLGLAISRKYVQLMGGDISVSSA 1387 >gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] Length = 896 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 14/240 (5%) Query: 545 VTDSV--RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601 ++D V + E+ EK ++ KA++IK+ F+ ++S+E+R+P+ I G L L+ + + Sbjct: 507 ISDQVYKQTEKLRLEKQKS-DKANKIKSEFLANMSHEIRTPINGIKGLHYLVLQQTDM-- 563 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 K +Y+ + +LL ++NDILD + ++AG ++L YS + L ++++ + T+ Sbjct: 564 --RKVKEYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTE 621 Query: 662 MHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD 718 ++ +I + +I K+ S D+ RL Q+ +L+NA+ F+ + L + DN Sbjct: 622 LNNKDITL-LIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQ 680 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSVK+NG I + K +F+ F + R+ G GLGLSI + + L GG + S Sbjct: 681 LRFSVKDNGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVS 740 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length = 1382 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A + E L + D K +F ++S+E R+PLT I+G D L+ +L + + Sbjct: 329 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELR-GRLQGADEQVR 387 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I + L LVN +LD + ++AG M+ Y + L + ++ + + + Sbjct: 388 TELDVIRRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGL 447 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V DR ++ +LSNA+ F+ G T+ ++ D + + + G Sbjct: 448 SFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTFDG-TIRVELRADGDAAVLRISDTG 506 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +P D +F RF + NA G G+GL++V+ + LHGG + SS+ TT Sbjct: 507 IGVPADEMPRLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFT 566 Query: 786 CRIP 789 R+P Sbjct: 567 IRLP 570 >gi|298248600|ref|ZP_06972405.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551259|gb|EFH85125.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1036 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 121/235 (51%), Gaps = 7/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR+PL + T L++ + K + + + Sbjct: 802 NSARKELEQRKDDFINMASHELRNPLAALKMQTQLVRKRLEKQSHHKAATALSKVEGPIK 861 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ ++LD++ + AG ++ + L+ LL EV +++ +++ ++ +++ DG + Sbjct: 862 QLERLIAELLDVSRIQAGKLEYQQEPVDLDALLQEVTETLP-QIYPSH---RILVDGAVH 917 Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 S + DR RL Q+F+ +L NA+ +S TV + + + V+++G IP + Sbjct: 918 TSLIGDRDRLGQVFANLLCNAIKYSPGAETVEMDLSASDDMVTIRVRDHGLGIPREQRDK 977 Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF A Q+ G+G+GL IV + HGG +++ S +T +P+ Sbjct: 978 IFERFYRVAGPRQKAIPGLGMGLYIVSEIVKHHGGSITVDSEVGKGSTFTVTLPT 1032 >gi|229197363|ref|ZP_04324090.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293] gi|228585987|gb|EEK44078.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293] Length = 448 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447 >gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1166 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L ++ L A + K+ F+ ++S+ELR+PL +++ LL + +L +KQ +Y Sbjct: 579 QARQELEDRAHQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEY 638 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M +N + L LL+ V + + ++ Sbjct: 639 AGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVALAQLLDYVDATFRPLTTQKSLDF 698 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDF 719 + + G + D RL Q+ ++SNA+ F+ +GS + L A+ G Sbjct: 699 TIHTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVRVRIEPATDGELPASVHRGGA 758 Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 + F V++ G IPE +++F F R+ G GLGLSI +L GG ++ Sbjct: 759 VVAFRVEDTGIGIPEQQLEAIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGALTAR 818 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 819 STPGRGSTFTLYLP 832 >gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 845 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 27/257 (10%) Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ++AL ++N L++A + K+ F+ ++S+E+R+PL IIGF+DLL+T + Sbjct: 339 QKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL---VRDY 395 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 K Y+ I +S LL L+NDILDL+ ++A ++L + L L+ E+KQ + + + Sbjct: 396 KSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQ 455 Query: 665 NNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 NI + V SD L D RL QI ++ NA+ F+ KG I N D++ Sbjct: 456 KNIELITDVSSDIPL-LIEFDEIRLRQILFNLVGNALKFTQKGYIKI----TVNCDYLDL 510 Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 V++ G IP D +F F + R G GLGL+I + + GG + Sbjct: 511 NKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTI 570 Query: 773 SISSSDEGVTTINCRIP 789 S+ S E +T P Sbjct: 571 SLHSESEKGSTFLMIFP 587 >gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 631 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 154/347 (44%), Gaps = 24/347 (6%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIAATCSRYYNESDGWDLFAA 502 G+ PDGR+ +NPA RL+ H + + A + Y E ++ Sbjct: 273 GIFRITPDGRVLRANPAL--------VRLAGFAHEHELVDYVADLTTMYVEPQRFEYLRE 324 Query: 503 IIT---SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAERAL 555 ++ S+D+ + + E S + +ML T +T + E AL Sbjct: 325 LLQTNGSYDEIESEVYRPATGERIWISETSRLVYAEDGSMLYAEGTIQEITARKQVEEAL 384 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEY 612 +A A+ K++F+ ++S+ELR+PL IIG+++LL + Q+ + Sbjct: 385 RHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSELLMDDTDFDDPTMVEQFRHDIAQ 444 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ + LLNLVND+LDLA V+AG ++ T LN L+ ++ +I +N + Sbjct: 445 INDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNSLVRDLIATINPMAQKNANSLYFE 504 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731 + L DR L QI +LSNA F+ GS I + + V++ G + Sbjct: 505 PNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGSINISVSFDPASQHVQCRVRDTGIGMN 564 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ + +F F RR G GLGL++ FI L G + + S Sbjct: 565 DEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFIELLNGSIQVES 611 >gi|22095655|sp|O49230|ETR1_BRAOL RecName: Full=Ethylene receptor 1 gi|2896029|gb|AAC39497.1| ethylene receptor [Brassica oleracea] Length = 735 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 31/261 (11%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDIARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE + SS++L L+ND+LDL+ ++ G ++L T L+ L EV I Sbjct: 375 ---TPEQRLMVETVLKSSSLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDN 716 + I + L F V D +RL+QI I+ NA+ FS +GS + L DN Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDN 491 Query: 717 ---GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 DF VK+ G+ I P+D+ K +F +F R G GLGL+ Sbjct: 492 RAPPDFFVVPTGSHFYLRVKVKDLGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLA 550 Query: 760 IVESFINLHGGHVSISSSDEG 780 I + F+NL G++ I S G Sbjct: 551 ISKRFVNLMEGNIWIESEGVG 571 >gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 1320 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ + E L E + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 572 LLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 629 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q +Y+ I+ S+ LL ++NDILD + ++AG + + L+++ + I+ K Sbjct: 630 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 688 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716 E I + D ++ V D RL Q+ + NA+ F+ KG S + + D+ Sbjct: 689 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 748 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 FSVK+ G I ++ +FN F S A R G GLGLSI + + L GG +S Sbjct: 749 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 807 Query: 774 ISSS 777 +SS+ Sbjct: 808 VSSA 811 >gi|91782579|ref|YP_557785.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia xenovorans LB400] gi|91686533|gb|ABE29733.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia xenovorans LB400] Length = 944 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 112/214 (52%), Gaps = 9/214 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT I+GF+ +L S N+ + VE I + + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNA---ELVEAIHEEALRMTGI 732 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD+A + AG ++LN +L + + ++ + + +++K+ +D L D Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLLHL--D 790 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVF 739 + ++FS + NA +++ + + + A R D F+ +V +NG +P M VF Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDTDGKSFVRVTVDDNGPGLPAGMEARVF 850 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +F + G+GLGL+I + + HGG + Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 884 >gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 820 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 113/226 (50%), Gaps = 17/226 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSKLGSLNSKQSQ 608 ++ D +K F+ VS+ELR+PLT+++GF +++ T K + + Sbjct: 355 KEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVAPALTEATPKTWRGAQQIRE 414 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I A L LV+D+LD+A +++G + N + + L + +++A I Sbjct: 415 NLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAETAGHAVRAVAGLAARKGIS 474 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ L + DR RL+Q+F +L NA+ F+ G+ ++++ + D + +V+++GS Sbjct: 475 LENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGA-IVVEGSVDGSEIRVAVRDSGS 533 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 I + +F +F + + +G GLGL I I HGG + Sbjct: 534 GIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIERHGGRI 579 >gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 572 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 16/235 (6%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKT------------SKLGSLNSKQSQ-YVEYISAS 616 + F+ VS+E+R+PLT+++GF L+K + L ++Q Q ++ I A Sbjct: 337 SDFLSMVSHEIRTPLTSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAE 396 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L +L+ND+LDLA ++AG M + +++ V + A + NI + +G+ Sbjct: 397 GERLKHLINDVLDLAKLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGR 456 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L DR RL+Q+ ++SNA+ F+ +G A+ N + V + G IPE Sbjct: 457 LPLVRGDRDRLIQVLVNLVSNAIKFTDQGYVACRARAQGN-TIVIEVSDTGIGIPESEQG 515 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF +F + + +G GLGL+I + + HGG + S +T +P Sbjct: 516 KVFEKFNQIGGTLTNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLP 570 >gi|219855335|ref|YP_002472457.1| hypothetical protein CKR_1992 [Clostridium kluyveri NBRC 12016] gi|219569059|dbj|BAH07043.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 669 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 + ++++ ++ VS++LRSPL I G + +L+ N+K+ + I + L+ LV Sbjct: 435 ERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIG-IYNDTEWLIRLV 493 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVA 682 ++L + D G + + + ++ ++++E Q S K H R+KV K+ Sbjct: 494 ENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYH----RVKVNIPEKIIMVSM 549 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D + Q+ + NA+ FS K S V +K ++ D IF V +NG+ IPE + +F+RF Sbjct: 550 DGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPYIFDRF 609 Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +N + RRGVGLGL+I +S + LHGG ++ + EG IP ++ Sbjct: 610 FTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPKEK 661 >gi|193215590|ref|YP_001996789.1| histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089067|gb|ACF14342.1| histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1054 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 21/256 (8%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 VR + AL NE LRK +K F+ +++L++PL +I+GF L+K N+K ++ Sbjct: 801 VRQKTALETSNEELRKLSNLKTEFLSIAAHDLKNPLQSILGFAQLVKE------NAKNAE 854 Query: 609 YV----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 V + I SS + L+ D+L+ + +++G ++LN S + L L + V S+ + ++ Sbjct: 855 MVAQMGDAIYQSSKRMFLLIKDLLETSKIESGKLELNQSPVDLASLASIVADSLQFQAYQ 914 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD--- 718 I+V + K +AD R+ ++ ++SNA+ +S +T V+ K +NGD Sbjct: 915 KEQTIQVQME-KSCDVLADGDRISEVLENLISNAVKYSPNKTTITIVVRKTRSENGDGQE 973 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775 +VK+ G + + + +F RF + R G GLGLSIV++ + HGG V Sbjct: 974 LVQLAVKDEGLGLSAEDKQKIFGRFQKLSARPTGGESSTGLGLSIVKTLVEAHGGRVWAE 1033 Query: 776 SSDEGV-TTINCRIPS 790 S + TT +P+ Sbjct: 1034 SDGKNKGTTFFVELPA 1049 >gi|163738019|ref|ZP_02145435.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis BS107] gi|163742585|ref|ZP_02149971.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10] gi|161384170|gb|EDQ08553.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10] gi|161388635|gb|EDQ12988.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis BS107] Length = 516 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/349 (22%), Positives = 154/349 (44%), Gaps = 23/349 (6%) Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 + VW + G + W+N++Y + QK G + F E + + A K Sbjct: 159 YPVWLQSDDGAVTWSNLAYDD-------LSQKIRGRNVD-FSEPLFTDLDDPMASGKPER 210 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAI 319 ++ E Y I G A+DV+ EI + + + L++ + Sbjct: 211 ISIPLPESKKKLWYNISTTETEAGWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGL 270 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AIFD+NR L N ++L + FL++ P+ + LR +PE N+ +W+ + Sbjct: 271 AIFDRNRQLVLFNPVLIDLTALPANFLSSRPNLLTFFDRLRDQRMMPEPKNYSSWRHQMA 330 Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 + +++ +++TW LP+G V +P G ++FE++T ++ L ++ + +++ Sbjct: 331 DLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQ 390 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---- 493 +D + E +AVF DG + SN A+ LW+ + + G+ + SR + + Sbjct: 391 SIMDQMDEAIAVFANDGTMTFSNAAYHDLWQMDPD----GSFAKITIMDSSRVWQDMCAA 446 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 + W + + R + ++L S + L + + N TM++F Sbjct: 447 TPAWGEIRDFVAG-SENRTAWWANVQLRSGTPLVCKVSAIQNGATMVSF 494 >gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1202 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 16/232 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E N + A + K+ F+ ++S+E+R+P+ IIG + L +KL ++KQ Y+ ++ Sbjct: 475 LEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKL---DNKQRHYISKVN 531 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVI 672 +S+ LL ++NDILD + ++AG +++ L+ +L EV I + K + ++ I V Sbjct: 532 SSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVA 591 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNN 726 SD + D R+ Q+ + + SNA+ F+ G ST +++ F+VK+ Sbjct: 592 SDVP-DQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVKVSTAMMR--ERECKINFAVKDT 648 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G + + S+F F R+ G GLGLSI ++ + L GG VS+ S Sbjct: 649 GIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVES 700 >gi|18252351|gb|AAL66207.1|AF386525_1 putative ethylene receptor [Pyrus communis] Length = 741 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ + Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 L +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + EV I Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNMIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + ++ + + +D + + + D +RL+QI ++ NA+ FS +GS I + Sbjct: 432 PVASIKRLSVALNIAADLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ ++F +F + G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574 >gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27] gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27] Length = 468 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 24/264 (9%) Query: 532 PLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 PLP +T D V A +AL L++A E + F+Q S+ELR+P+T I+G Sbjct: 216 PLPEPET-------RDEVAALVKALNGMLTRLQEAFEAQTRFLQDASHELRTPITAILGH 268 Query: 591 TD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 LL+ + L Q + +E + + + LV+D+LDL+ +G ++ + + D Sbjct: 269 VGYLLRRT---PLTEAQRESLEVVKREAERMGKLVSDLLDLS--QSGTWRIRPVPVRVLD 323 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 LL EV++ A K + I ++ D + + D RL Q+ + ++SNA+ G+ + Sbjct: 324 LLEEVREEFA-KSFDGAILVEAPEDLYV---LGDPDRLHQVMANLVSNAL---KAGARHV 376 Query: 710 LKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 A D GD + V+++G IPE+ +F RF V A +R G GLGL+IV++ + Sbjct: 377 WLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILE 436 Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790 HGG V + S T + +P+ Sbjct: 437 AHGGEVWVESQVGKGTAFSFSLPA 460 >gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 1129 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 8/256 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T +VT E L E A A++ K++F+ +S+E+R+PL I+G +L+ ++ Sbjct: 495 LCTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMARAQ 554 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L ++ Q V +SS LL+ +ND+LDL+ ++ M L L +L+EV Sbjct: 555 LPLAERRRLQTV---MSSSDALLHTINDVLDLSKAESNQMALEAVPFDLRAVLHEVAAIF 611 Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARD 715 ++R++ + LG +V D R+ QI S ++SNA+ F+ G + L AA Sbjct: 612 RALADAKHLRLECVIAAGLGDGYVGDPARVRQIVSNLVSNAIKFTEHGRVTVEALPAAVP 671 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 V++ G I D ++F+ +V RR G GLGL + L GG V+ Sbjct: 672 GRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMGGDVT 731 Query: 774 ISSSDEGVTTINCRIP 789 + S +P Sbjct: 732 VESRPGAGAVFTASLP 747 >gi|332711100|ref|ZP_08431034.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332350082|gb|EGJ29688.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 369 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 29/305 (9%) Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAE 552 W++ +T++ D D LE + I P + F + VT + Sbjct: 75 WNIPVVYLTAYSD-------------DITLERAKITQPFGYLLKPFEEEELRVTIEIALS 121 Query: 553 R--ALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R A T+ +AL ++ E K+SFV VS+E R+PL+ ++ T+LL+ + K Sbjct: 122 RFQAETKIRQALVIEQELREQKSSFVSIVSHECRTPLSKVLLATELLERYSKDLVKDKHR 181 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---E 664 +Y E I S + L+++IL + + KLN+ +N L E+ + +M E Sbjct: 182 KYFEQIKGSIQDMRQLLDEILFIEKAEGN--KLNFHPTPIN--LVELCSDLIEQMQLATE 237 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + RI + S G + D Q L IF+ +LSN + +S +G TV + + IF +K Sbjct: 238 GSHRIILTSQGNIPDAYMDTQLLRYIFNNLLSNGIKYSPEGGTVEFQLTVEGNWAIFKIK 297 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 ++G IPE +F F ++ G G GLGLSIV+ + H G + + S T Sbjct: 298 DSGIGIPEQELSQLFEPFQRASNVGDIPGTGLGLSIVKKSVEQHRGQILVDSQVGVGTVF 357 Query: 785 NCRIP 789 R+P Sbjct: 358 TVRLP 362 >gi|296160597|ref|ZP_06843412.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1] gi|295889123|gb|EFG68926.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1] Length = 944 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 113/213 (53%), Gaps = 9/213 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT I+GF+ +L S N+ + VE I + + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNA---ELVEAIHEEALRMTGI 732 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD+A + AG ++LN +L + + ++ + + +++K+ +D L D Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLLHL--D 790 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSVF 739 + ++FS + NA +++ + + + A R + D F+ +V +NG +P M VF Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDNGPGLPAGMEARVF 850 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +F + G+GLGL+I + + HGG + Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTI 883 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 166/358 (46%), Gaps = 32/358 (8%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---------NRLSPGTHIRNIAATC 487 +D + +G+ + D + + NPA+ S+ +K+ E + + P IR Sbjct: 588 AMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIR------ 641 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 + Y E D A F KS Q L V+EY++ P + + T ++T Sbjct: 642 VQEYREQYLGDPIGAFDVEFRMRGKSGQYHWLLSRGRVVEYTVDNQPK-RMVGTHKDITR 700 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ L +KQ Sbjct: 701 HKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIG---MLQLAQRTELTAKQE 757 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y++ S+ LL ++NDILD + ++AG ++L L+ +L+ A K + + Sbjct: 758 DYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHALDLNALKSQQKGV 817 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720 + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 818 ELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL--GCEDVGERDHRITLK 875 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ S+F+ F R+ G GLGLSI + +++ GG + + S Sbjct: 876 FWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQS 933 >gi|29347830|ref|NP_811333.1| two-component system histidine kinase, FrrD [Bacteroides thetaiotaomicron VPI-5482] gi|253572216|ref|ZP_04849620.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] gi|29339732|gb|AAO77527.1| two-component system histidine kinase, FrrD [Bacteroides thetaiotaomicron VPI-5482] gi|251838396|gb|EES66483.1| two-component system histidine kinase [Bacteroides sp. 1_1_6] Length = 482 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 119/216 (55%), Gaps = 4/216 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D K +F+ +S+EL++P+ I+ LL+ ++G LN +Q Q + I +S LL+ Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLS 314 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 + ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + V++ AR GD I V++ G I KS+F+ Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVI-GARQEGDMIDLYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISRDFVEAHGGTLTVES 468 >gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1990 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 19/247 (7%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ + LN +Q Y I S+ LL Sbjct: 1322 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---VLNEEQRDYTNTIQTSANSLL 1378 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y L+ +V + ++T + + I + + ++V Sbjct: 1379 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 1438 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGD----FIFSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+++G V A N D F++ + G Sbjct: 1439 KGDKVRIRQVLLNVIGNAIKFTTEGEVFSRCRVYKDGASSNLDNEIVLEFAIIDTGRGFT 1498 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT---TIN 785 ++ +F F + + Q G GLGL I + LHGG + S+ +G T T Sbjct: 1499 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGKGSTFTFTAK 1558 Query: 786 CRIPSKE 792 +P+KE Sbjct: 1559 FALPTKE 1565 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 13/235 (5%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +AL + A +K+ F+ ++S+E+R+P+ IIG T+L+ + L +++Q +Y+ Sbjct: 101 ANKALEQARAQSEIAARLKSEFLANMSHEIRTPMNGIIGMTELVLDTHL---STEQREYL 157 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669 + + +S+ LL L+NDILD + ++AG + L L ++L+ + + + ++ + Sbjct: 158 DLVKSSAESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLT 217 Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723 +++ D L + V D RL QI ++SNA+ F+ +G + A D SV Sbjct: 218 WEILPD-VLDTLVGDPTRLRQIVVNLVSNAIKFTERGGIAVRAQAIVEADLRQCVLYCSV 276 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G IP + +F+ F V + Q G GLGL+I + + GG + + S Sbjct: 277 TDTGIGIPPEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVES 331 >gi|261368232|ref|ZP_05981115.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176] gi|282569741|gb|EFB75276.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176] Length = 367 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 138/259 (53%), Gaps = 8/259 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLK 595 +++ + VT +++ R + EK A L K ++++ ++ +S++LR+PLT+I G +LL Sbjct: 107 IVSIITVTLAIQNIRNIEEKERAALLAKNEQLRADLLRAISHDLRTPLTSISGNAANLLA 166 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + ++Q +++ I S L+NLV ++L + ++ G M L ST ++ +++ E Sbjct: 167 NDEKLDGEARQQIFLD-IYDDSIWLINLVENLLSITRIEDGRMNLRLSTELVGEVIEEAL 225 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + K E+ IR+ + + L D + ++Q+ ++ NA+ ++ GST+ + A Sbjct: 226 RHTHRKSCEHTIRVDLPDELLLARM--DARLIVQVLINLVDNAIKYTPAGSTITVAARAQ 283 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773 +G + SV ++G I + VF F + H+ RR +GLGL++ ++ ++ HGG ++ Sbjct: 284 DGFAVLSVLDDGPGIAPHIRPHVFEMFYTGEHKVADSRRSLGLGLALCKAIVDAHGGTIT 343 Query: 774 ISSSDEGVTTINCRIPSKE 792 ++ + +P E Sbjct: 344 LTDNPPHGCNFTFTVPRGE 362 >gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 564 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 100/429 (23%), Positives = 183/429 (42%), Gaps = 35/429 (8%) Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451 + L +G + + + GG I +E+++ + +E + + ++ G+ +F Sbjct: 130 FALSDGGMVSLTCAPSRDGGWILSYEDISTLIRVEDSLTEQHRRFDAALSNMPHGLCMFD 189 Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDE 510 + L N ++ ++ + PGT + +I A SR N +D F + + Sbjct: 190 STKNLILCNASYARMYNLPDLLTQPGTPLVDILAYRSREGNGPADTTTYFDVVFEATVRG 249 Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------- 562 + Q + L V++ + P+ N + T +VT +VR L ++ L Sbjct: 250 APASQNIV-LADGRVIKITHNPMQNGGYVATHEDVTKTVRLAEDLRRHHDQLEATVKSRT 308 Query: 563 -----------------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R +E++ FV S+E R+PL I L K G++ + Sbjct: 309 AEVERQARELERMLAQERNINELQRQFVAMASHEFRTPLAIIDAAAQRL-LRKRGAVEPE 367 Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662 S V+ I AS T +++L+ IL +D G + +NY L L+ +QS K Sbjct: 368 FLSDKVDQIRASVTRIVDLMESILSAGRLDTGKIDINYDACALRSLIKTCCERQSTIAKS 427 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 H + I DG S AD + L Q+F+ +LSNA+ ++ S V + A + G+ S Sbjct: 428 HSFVLDI----DGLPESIDADPRTLAQVFTNLLSNAVKYAPGTSEVRVTAWAETGNVKVS 483 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + ++G I + +F R+ G G+GL++V+ I LH G + + S+ + Sbjct: 484 ISDDGVGIDAEDVPRLFQRYFRARTSTGIAGTGIGLNLVKQIIELHNGSIEVRSARGCGS 543 Query: 783 TINCRIPSK 791 T +P K Sbjct: 544 TFTVTLPIK 552 >gi|312968949|ref|ZP_07783156.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75] gi|312286351|gb|EFR14264.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75] Length = 900 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA++ K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|312875871|ref|ZP_07735861.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] gi|311797352|gb|EFR13691.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor lactoaceticus 6A] Length = 467 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + LN S + + Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L ADR + ++ +L NA+ ++ G + + Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|237811925|ref|YP_002896376.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|237503975|gb|ACQ96293.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 693 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 624 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E L + + +D +K++F+ ++S+E+R+PL I+GF+ LL ++ Sbjct: 378 DITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSALLAATE---DM 434 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +++ Y IS ++ +LL L+ND+LDL+ +++G ++L+ S L +LL+E ++ Sbjct: 435 AEKELYNSLISHNNELLLELINDVLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQLA 494 Query: 664 EN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 +R + G L DR R+ QI + LSNA+ ++ G + D+ Sbjct: 495 AGVELRTHYLDQGFLVEL--DRLRIKQILNNFLSNALKNTTSGYVEVFYEI-DSSYVRIG 551 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V++ G IP++M + +F RF Q G GLGL I +S ++ G + S T Sbjct: 552 VRDTGRGIPQNMLEKIFERFEKVDSFTQ--GAGLGLPICKSIVDKMNGRIWADSQLGIGT 609 Query: 783 TINCRIP 789 T +P Sbjct: 610 TFMVELP 616 >gi|220916860|ref|YP_002492164.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954714|gb|ACL65098.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 844 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ +ALR AD K F+ +S+ELR+PL I LL + G +++++ V I Sbjct: 458 QREQALRDADRRKTDFLAVLSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAV--IERQ 515 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L LV+D+LDL+ V+ G + L + + +++ + E + + D + Sbjct: 516 ADHLAKLVDDLLDLSRVNFGKIALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQ 575 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 AD RL QI +L+NA+ F+ G V + + G + V++ G I + + Sbjct: 576 PVWVDADPTRLGQIAGNLLTNAVKFTPPGGRVGVTVRAEGGACVLRVRDTGVGIDPGLLE 635 Query: 737 SVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEG 780 ++F F + A R + R G+G+GLS+V S + +HGG V S G Sbjct: 636 AIFEPF-AQAERTRWTARGGMGIGLSLVRSLVGMHGGTVVARSEGAG 681 >gi|77456275|ref|YP_345780.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens Pf0-1] gi|77380278|gb|ABA71791.1| putative two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 596 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 122/253 (48%), Gaps = 13/253 (5%) Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L YS+ P+ + Q +L V V V +RA + +++ FV S+ELR+P Sbjct: 342 LLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 391 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T + L + S++S ++ ++ L+ L+ND+L+ + +G+ KL + Sbjct: 392 VTGMHMAFGLFRERAKFPEESRESDLLDTVNEEMQRLMQLINDLLNFSRYQSGLQKLTLA 451 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + +LL + A + + + V + G L AD+ +L ++ ++ NA+ ++ Sbjct: 452 PCSIEELLERARLRFADSAAQKGVALNVEAQGSLPRLQADQAQLDRVLDNLIDNALRHTA 511 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 + + L+A R I SV++NG I +F FV + + G GLGL++ + Sbjct: 512 RDGLIRLQARRHGERVIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 569 Query: 764 FINLHGGHVSISS 776 + LHGG + + S Sbjct: 570 IVQLHGGRMGVYS 582 >gi|193066318|ref|ZP_03047368.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194428476|ref|ZP_03061016.1| TMAO reductase system sensor TorS [Escherichia coli B171] gi|192926025|gb|EDV80669.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194413528|gb|EDX29810.1| TMAO reductase system sensor TorS [Escherichia coli B171] Length = 904 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 610 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 156/348 (44%), Gaps = 34/348 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I + +G+ VF + R+ NPA R+L E L G+ A +C+ + + Sbjct: 272 ISSIEDGLVVFDTNLRVASINPAARALL---EMPLGQGS-----APSCADILPDERLCQI 323 Query: 500 FAAII-----TSFDDERKSL-----QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 A + + DER+ + + T E L +S+ + L+ V + Sbjct: 324 IRAAVENGARPALPDERRVIAIRKGETTKECL------FSVTAIRGGDRRLSGVVL---- 373 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 L L++ + +K+ FV S+ELR+PLT++ LL + L + + Sbjct: 374 -----LLRDVTRLKEVERLKSEFVMAASHELRTPLTSLGMSVGLLLEHAVAGLAERDREL 428 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ + LV+D+LDL+ ++AG ++L + ++ + L + K ++ N + + Sbjct: 429 LQAAHEEIQRMKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSL 488 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D AD ++ + + ++SNA+ + KG + L A+ SV+++G Sbjct: 489 TAELDAAAPPVRADANKITWVLTNLISNALRYVGKGGHIALAASVIGPCAHLSVRDDGPG 548 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP + +F +FV R + G GLGL+I + + HGG + + S+ Sbjct: 549 IPPEFQSKIFQKFVQVQGR-EAGGTGLGLAICKEIVRAHGGAIWVESA 595 >gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] Length = 254 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 11/230 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 10 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 69 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670 IS +S L+ L++DILDL+ +++ +K YS L ++ ++ K+ + + E I IK Sbjct: 70 LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 127 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727 + D RL Q+ ++NA F+ +G ++ D+ +F V++ G Sbjct: 128 AVLPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 186 Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ K +F+RF N ++G GLGLSI ++ + G +S+ S Sbjct: 187 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 233 >gi|226193421|ref|ZP_03789028.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225934561|gb|EEH30541.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 693 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|215486110|ref|YP_002328541.1| hybrid sensory histidine kinase TorS [Escherichia coli O127:H6 str. E2348/69] gi|215264182|emb|CAS08526.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli O127:H6 str. E2348/69] Length = 910 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA++ K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAKIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|153005213|ref|YP_001379538.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028786|gb|ABS26554.1| response regulator receiver sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 418 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%) Query: 552 ERALT---EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E ALT N L + DE+K++F+ ++++EL +PLT + G+ +L + KLG ++ +Q + Sbjct: 146 EAALTGARRANARLLELDELKSAFMHNLAHELSTPLTPLAGYLRILSSEKLGPMSPQQKR 205 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V+ + S T L +V+++ D A++ AG + + + L +EV + + + Sbjct: 206 IVDSMIHSVTRLARVVDNLSDFASLQAGESPIMEGAVNPDQLADEVVAEQRPMIRDARLH 265 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + V G +AD ++L Q + I+SNA+ FS G V+++ R G ++V + G Sbjct: 266 VVVAHAGGE-PVIADPRKLRQAIANIVSNAVKFSPHGGEVLVEVTRQPGKLRYTVYDQGP 324 Query: 729 SIPEDMCKSVFNRFVSNAHRG----QRRGVGLGLSIVESFINLHGGHVSISSS 777 I + +F RG + G GLGL + HGG V + S Sbjct: 325 GIRSLEQERIFEPLHHARARGTDEARLPGSGLGLPVARRIAEAHGGRVWVESP 377 >gi|71907262|ref|YP_284849.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71846883|gb|AAZ46379.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 903 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 10/245 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E NE LR+ D +K+ F+ V++ELR+PLT+I +++L L + +++ I Sbjct: 661 LREANERLRELDRMKDDFISTVTHELRTPLTSIRALSEMLHEDPRLELVERM-RFLGIIV 719 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + L L+N ILD+A +++G + + L ++ E S+ + + ++ I Sbjct: 720 GEAERLTRLINQILDMAKLESGRAEWTTGEVDLGEIARETMDSVGQLFRDKGVLLEGDIP 779 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 DG G V ADR RL Q+ +LSNA+ F + V +K D V++NG + Sbjct: 780 DG--GPIVLADRDRLTQVLINLLSNAVKFVPGELGCVQVKIGVDGNMVRVEVRDNGPGLT 837 Query: 732 EDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTI-NCR 787 + C+ +F +F N G+ +G GLGL I I GG + + S EG I Sbjct: 838 AEECEVIFEKFRQGGNTLTGKPKGTGLGLPISRQIIEYFGGKLWVESHPGEGANFIFTVP 897 Query: 788 IPSKE 792 +P+ E Sbjct: 898 LPASE 902 >gi|320160300|ref|YP_004173524.1| two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994153|dbj|BAJ62924.1| two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1087 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASSTILL 621 +A+++K + +V +E+R+PL I+G+ L + + G +++ + ++ IS S LL Sbjct: 475 RANQLKTRLLANVGHEMRTPLNVILGYAQSALNRHKRSGHHDTELERDLQIISQSGEHLL 534 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSF 680 ++ND+LDL+ + G + + + + ++ E ++ A +N IR +V +L Sbjct: 535 RMINDLLDLSRAEIGALNMYFEWMDPRPIILEAFETFARSEEQNPFIRWRVEIPERLPII 594 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD RL QI +LSNA F+ +G ++L A + SV + G I + + +F Sbjct: 595 QADSARLKQILLNLLSNARKFTHEGE-IVLSAHVEPPFLRLSVADTGEGISLEQQERLFE 653 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F +A G+RR G+GLGLSI I LHGG +++ S +T +P Sbjct: 654 PF--SASMGKRRPSGIGLGLSITRHLIALHGGTLTLESQPGKGSTFYIYLP 702 >gi|302764822|ref|XP_002965832.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii] gi|300166646|gb|EFJ33252.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii] Length = 229 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+P+ IIG D+L +L +Q V I +T LL++VN++LD++ V+AG Sbjct: 5 SHELRTPMAGIIGMLDILSCD---TLTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAG 61 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695 M L+ + L L + A + + ++ + + +SD + D R+ QIFS +L Sbjct: 62 KMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSNLL 121 Query: 696 SNAMDFSSKGSTVI-------LKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSN 745 SN+M F+ G VI + + D F IF V + G IP M ++VF+ FV Sbjct: 122 SNSMKFTENGHIVIRGWADEKPEISSDGPSFINLIFEVDDTGCGIPSHMHETVFDSFVQA 181 Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 R G GLGL IV S + GG V + Sbjct: 182 DASSTRIHGGSGLGLYIVRSLVQKMGGEVQV 212 >gi|302802654|ref|XP_002983081.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii] gi|300149234|gb|EFJ15890.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii] Length = 229 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+ELR+P+ IIG D+L +L +Q V I +T LL++VN++LD++ V+AG Sbjct: 5 SHELRTPMAGIIGMLDILSCD---TLTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAG 61 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695 M L+ + L L + A + + ++ + + +SD + D R+ QIFS +L Sbjct: 62 KMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSNLL 121 Query: 696 SNAMDFSSKGSTVI-------LKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSN 745 SN+M F+ G VI + + D F IF V + G IP M ++VF+ FV Sbjct: 122 SNSMKFTENGHIVIRGWADEKPEISSDGPSFINVIFEVDDTGCGIPSHMHETVFDSFVQA 181 Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 R G GLGL IV S + GG V + Sbjct: 182 DASSTRIHGGSGLGLYIVRSLVQKMGGEVQV 212 >gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1053 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A K++F+ ++S+E+R+P+ I+G T LL+ + Q++ + I Sbjct: 433 LAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRRD---GATATQNERLGKIE 489 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +++ LL ++NDILDL+ +++G ++L + L LL++V+ +A + + + S Sbjct: 490 SATRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSKGLTLSIEST 549 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI-FSVKNNGSSI 730 G D RL QI SNA+ F+ +GS V+ A D+G + F V + G I Sbjct: 550 GLPRWLHGDVTRLRQILLNYASNAVKFTERGSVVLRARPVAEDDSGVLVRFEVADTGIGI 609 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + S+F F RR G GLGL+I L GG S+ Sbjct: 610 APEQLASLFRAFSQADSSTTRRYGGTGLGLAINMQLAQLMGGETGAEST 658 >gi|226315262|ref|YP_002775158.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226098212|dbj|BAH46654.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 369 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 129/250 (51%), Gaps = 7/250 (2%) Query: 544 NVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V DS+ A ++ + E R+ ++ K+ + +VS++LR+PLT+IIG+ L++ +K Sbjct: 117 QVVDSIHALVKSALDAMEEERRLEQSKDELITNVSHDLRTPLTSIIGYLGLIEQNK--HK 174 Query: 603 NSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + ++ ++ +I+ +N LVND+ + V L + L +L+ +V Sbjct: 175 DEEKFKHYAHIAYEKAKQMNVLVNDLFEYTKVRNRGAYLKRTQFDLVELVEQVSVGFRLV 234 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +E +R+ V + + D +L+++ ++SNA+ + G+ +I++ Sbjct: 235 ANEAGLRLIVDTPDQKIEMAGDTDKLVRVLENLISNAVKYGHDGTEIIIRVFCQGEGVAI 294 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 SV NNG+ IP + S+F RF V + + G GLGL+I +S I+LH G +S S+ E Sbjct: 295 SVANNGAPIPAEYVPSLFERFFRVEGSRSKETGGSGLGLAIAKSIIDLHQGSISAESTSE 354 Query: 780 GVTTINCRIP 789 TT +P Sbjct: 355 W-TTFTVWLP 363 >gi|168184843|ref|ZP_02619507.1| sensor histidine kinase [Clostridium botulinum Bf] gi|237793673|ref|YP_002861225.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182672106|gb|EDT84067.1| sensor histidine kinase [Clostridium botulinum Bf] gi|229263106|gb|ACQ54139.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 464 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G MKLN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKCEEEYITIVVKDTGVGINKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISVKLP 460 >gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 721 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 11/244 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AER EA A+ K F+ ++S+ELR+PL I+G+ +L+ +L+ +Q + Sbjct: 248 AEREARNLAEA---ANRAKGEFLANMSHELRTPLNGILGYAQILERD--AALSERQRERA 302 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669 I S LL L+ D LD A ++AG +++ + L ++ ++ I K + + Sbjct: 303 SSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIRDIIDVKAEQKRLDFI 362 Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ D +G AD +RL Q+ +L+NA+ F+ G + + ++ F V++ G Sbjct: 363 CEITGDAPVG-VRADERRLRQVMLNLLANAVKFTDSGCVTLHISRSESNRVRFEVRDTGI 421 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I D ++F F +RR G GLGL+I F+ GG + + S +T Sbjct: 422 GIGHDQLNTIFEPF-EQLGAAERRAGGAGLGLAISREFVRAMGGEIEVESRIGQGSTFRF 480 Query: 787 RIPS 790 +P+ Sbjct: 481 ELPA 484 >gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1021 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 12/246 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +++T R E+ L +A +K+ F+ ++S+E+R+P+ ++IG DLL TS+L Sbjct: 518 TSLDITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELS 577 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++ + ++A L ++VND+LDL+ ++AG M L +S ++ +A Sbjct: 578 EAEREETTSLLRLAAEH--LSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAI 635 Query: 661 KMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713 + I + + S+ S D RL QI ++SNA+ FS +G V ++ Sbjct: 636 QARARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRI 695 Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ + V + G I D + +F + QRR G GLGL+I GG Sbjct: 696 EEDSRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGG 755 Query: 771 HVSISS 776 + + S Sbjct: 756 ELHVRS 761 >gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] Length = 1169 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 125/261 (47%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E +IP+ + +L FV +++ + E L + + + K+ F+ +S+E+RS Sbjct: 453 VEMKMIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRS 512 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G +L+ SKL N +Q Y + T LL+ +NDILD + ++AG M L Sbjct: 513 PLNAVLGSVELMLDSKL---NKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLES 569 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 + ++ +V + +A HE I + + + V D QRL Q+ ++ NA+ F Sbjct: 570 VSFSPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKF 629 Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 SS G I + + +V + G + K +F F V + H +G G Sbjct: 630 SSGGCVSVEMWIPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSG 689 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I + GG + +SS Sbjct: 690 LGLAICAELIEMMGGKIELSS 710 >gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 762 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 128/255 (50%), Gaps = 10/255 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +V+VT++ L++ +A +A K+ F+ +S+E+R+P+ I+G +LL + S Sbjct: 154 WVDVTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSK---S 210 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q Q + I S+ L+ ++ND+LDL+ ++ ++L+ L L++ V +A + Sbjct: 211 MSPDQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQ 270 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 H +R+++ L S V D RL Q+ +LSNA+ F++ G+ I A + D Sbjct: 271 AHAKGLRVRITISPALASSVEVDDMRLRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSDTT 330 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 SV + G + + + +F F R G GLGL I + I L GG +++ Sbjct: 331 QHLAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGELAL 390 Query: 775 SSSDEGVTTINCRIP 789 + + T + +P Sbjct: 391 ETEEHVGTNVTVVLP 405 >gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1245 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 12/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602 ++T AER + E +A + K+ F+ ++S+E+R+P+ IIG + L L+T L Sbjct: 407 DITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTE----L 462 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + KQ Y+ I ++ LL ++NDILD + ++AG + + +L+D L + IA K Sbjct: 463 SRKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKA 522 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 E + + + D + + D RL QI +++NA+ F+ G V+ +K N + Sbjct: 523 REKGLELLIAMDPAVPDGLIGDDLRLGQILVNLVNNAVKFTDTGEIVVRVKQVEANDREV 582 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FS+ ++G + E +FN F R+ G GLGL+I + + G + + Sbjct: 583 MLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVE 642 Query: 776 SS 777 S+ Sbjct: 643 ST 644 >gi|312127495|ref|YP_003992369.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] gi|311777514|gb|ADQ07000.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor hydrothermalis 108] Length = 467 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + LN S + + Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L ADR + ++ +L NA+ ++ G + + Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 565 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++FV +S+ELR+P+ ++G L T++L + +Q++YV+ I S L+ ++NDIL Sbjct: 200 KSAFVAMMSHELRTPMNGVLGLAHALSTTRL---DVRQAEYVDMIIQSGDGLMTILNDIL 256 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687 DL+ ++AG ++L + + L +++ + + + + D ++ + D R+ Sbjct: 257 DLSKIEAGKLELEIAPFDIRALAGQIRLLWSETARGKGVELALEVDPATPAWLLGDAARV 316 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI ++SNA+ F+ G VI A G+ + SV + G + + +F F Sbjct: 317 RQILMNLVSNALKFTLAGRVVI-GVAPAEGEIVLSVTDTGVGLTAEQRARLFAPFAQGDR 375 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 RR G GLGL+I L GG + + S +T R Sbjct: 376 STARRFGGTGLGLAICRHLAELMGGAIGVESEPGVGSTFTVR 417 >gi|323528813|ref|YP_004230965.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385815|gb|ADX57905.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 882 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 5/232 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ALR+ D K+ F+ +++ELR+PL + LL+ + ++NS + V +S + Sbjct: 500 ALRETDRRKDEFLAMLAHELRNPLAPMRNAIALLRRERESAMNS--CELVGMLSRQVDHM 557 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV+D+L+++ + G + L ++L + +++++ + V Sbjct: 558 AQLVDDLLEVSRITHGRIVLRREPVLLGTAIYGALETVSSMAASRGQHLTVKLPPAPVWL 617 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD RL QIF +L+NA ++ G +V + A D ++++NGS I D+ +F+ Sbjct: 618 HADPLRLSQIFVNVLNNACKYTDPGGSVCVTALADERFAAVTIEDNGSGISPDLLPHIFD 677 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 F R G+G+GLS+V+ + LHGG + I+S G T++ R+P Sbjct: 678 LFAQGERTLDRAHGGLGIGLSLVKKLVELHGGTIDIASPGPGRGATVSIRLP 729 >gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] Length = 1045 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 13/253 (5%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 Q + +VT E+ L E +A EIK+ F+ ++S+E+R+P+ IIG + L LK Sbjct: 266 QAAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALK 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L++KQ YV I +S+T+LL ++NDILD + ++AG + + L+++L+ V Sbjct: 326 TE----LSAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVS 381 Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712 K + + + ++ + D R+ Q+ +++NA+ F+ +G S + Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVG 441 Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 R G F V + G + E + +F F R+ G GLGLSI + L Sbjct: 442 ERQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501 Query: 769 GGHVS-ISSSDEG 780 G +S IS +EG Sbjct: 502 EGEISVISQPEEG 514 >gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 692 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T K EA KA++ K+ F+ +S+E+R+PL +I+G D+ S L + +Q ++ + + Sbjct: 316 TAKTEA-EKANKAKSQFLAMMSHEIRTPLNSILGLVDIFHGSLL---SEEQLDWLNQMES 371 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 SS +LL +++D+LD++ ++AG LN I L LN + T+ + I + V + Sbjct: 372 SSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQ 431 Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +V AD RL Q+ ++ NA+ F++ G + N SV + G I Sbjct: 432 NVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTT 491 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + +F FV R+ G GLGL+I++ + L G +++ S +T +P KE Sbjct: 492 LEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNVGSTFKITLPLKE 551 >gi|160894156|ref|ZP_02074934.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50] gi|156864189|gb|EDO57620.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50] Length = 897 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 129/240 (53%), Gaps = 6/240 (2%) Query: 557 EKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 EK EA L + ++++ + ++ +S++LR+PLT I G D L + ++ + Q I Sbjct: 655 EKEEAAVLAQNEQLRANLLRAISHDLRTPLTAISGSADNLLANYKKMDDALREQTFTDIY 714 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L+NLV ++L + ++ G + L S +++++++E + I K E+ IR+ D Sbjct: 715 DDSMWLINLVENLLAVTRIEGGQVNLTRSIELMDEVVSEALKHINRKSKEHTIRVTSGKD 774 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L + D + ++Q+ ++ NA+ ++ GS + + + SV +NG IP++ Sbjct: 775 FILA--LIDAKLIVQVIINLVDNAIKYTPVGSVIEIHTDQKEQWVTVSVSDNGPGIPDEQ 832 Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F+ F S A++ RR +GLGLS+ +S + HGG +S+S + T +P++E Sbjct: 833 KPRIFDMFYSGANKVVDSRRSLGLGLSLCKSIVTAHGGTISVSDNQPNGTAFKFTLPAEE 892 >gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114] gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114] Length = 864 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 10/246 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L + E A++ K +F+ ++S+E+R+PL IIG + +L +KL + Q Y+ Sbjct: 340 EKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI---QLDYLN 396 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I SS LL L+NDILDL+ ++AG + + +++ + K E N+ + + Sbjct: 397 TIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKATEKNLDLHI 456 Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726 + +F+ D R+ QI + SNAM F+ KG S + G +VK++ Sbjct: 457 HISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHKGFISISVNFSHRVENEGYLTIAVKDS 516 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I + +++ N F+ RR G GLGL+I I L GG + I S E + Sbjct: 517 GIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGTLDIESEQEKGSRF 576 Query: 785 NCRIPS 790 + RI + Sbjct: 577 SFRIKT 582 >gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia enterocolitica W22703] Length = 976 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A R + + + G I E Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786 +F F RR G GLGL I E + GG +S S E +T +N Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521 Query: 787 RIPSK 791 IPS+ Sbjct: 522 AIPSR 526 >gi|260843241|ref|YP_003221019.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] gi|257758388|dbj|BAI29885.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] Length = 914 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|229156832|ref|ZP_04284919.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342] gi|228626752|gb|EEK83492.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342] Length = 448 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K + +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWRDKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 466 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 566 DEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +E++NS F+Q+VS+ELR+PL+ + G+T+ + + + ++ +Y+ I + L Sbjct: 233 EEVENSRREFLQNVSHELRTPLSYMRGYTEAM-LEGMTTSGEEREKYLRIIHNETARLTR 291 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVND+LDLA ++ + I L+ +V + + +I + + D ++ Sbjct: 292 LVNDLLDLAQLEGESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEV-IIEG 350 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+ S +L NA+ ++ + V+++ +++ + +VK+ G IPE+ +++ +RF Sbjct: 351 DADRLEQVISNLLDNAIRYTPEAGEVMMELKQNDHLAVLTVKDTGCGIPEEDLENIMDRF 410 Query: 743 VSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 H+ + R G GLGL+IV+ + HGG + + S T+I+ Sbjct: 411 Y-RVHKPRTRNEGGFGLGLAIVKQIVWKHGGTIDVQSQPGKGTSISL 456 >gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa] Length = 2177 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 15/221 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ L+ Sbjct: 1483 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1539 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKLNY L+ +V + ++T + + + + + ++V Sbjct: 1540 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1599 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI--------FSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+++G K N + FS+ + G Sbjct: 1600 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGRGFT 1659 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 E+ + +F F + + Q G GLGL I + LHGG Sbjct: 1660 EEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1700 >gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 2025 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 136/254 (53%), Gaps = 11/254 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT +AE A+ E A A+ K+ F+ ++S+E+R+PL ++G LL ++ +L+ Sbjct: 1623 DVTLRKQAETAMLEAKNAAEAANRAKSEFLANMSHEIRTPLNGLLGMLQLLHST---TLD 1679 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q +Y + + L L++DILDL+ ++AG + + + L +++ ++++ A Sbjct: 1680 AEQEEYAQMAIRAGNRLTRLLSDILDLSRIEAGRLPIVAAPFRLANVVQALRETFAPFCK 1739 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNG 717 E +++ ++ L + V D R+ QI ++ NA+ FS+ G ++ + A + Sbjct: 1740 EKRLQLVFETEAALPEWLVGDELRIRQILFNLVGNALKFSTNGDVLVTMSRLPGVAAKHA 1799 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 +F+V +NG IP+D SV F+ ++ ++G GLGL+I + ++L G +++ Sbjct: 1800 RILFTVADNGIGIPDDKLDSVCEPFIQAEGSYTRSQQGAGLGLTITKRLVDLMHGTMALE 1859 Query: 776 SSDEGVTTINCRIP 789 S TT +P Sbjct: 1860 SEAGVGTTAYVTLP 1873 >gi|224540583|ref|ZP_03681122.1| hypothetical protein BACCELL_05497 [Bacteroides cellulosilyticus DSM 14838] gi|224517833|gb|EEF86938.1| hypothetical protein BACCELL_05497 [Bacteroides cellulosilyticus DSM 14838] Length = 877 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ++ + L + + L +A K F +VS++ R+PLT I + L K SL Q Sbjct: 350 IQQKEQLEQLSRELEEATHAKLVFFTNVSHDFRTPLTLIADPINQLLADK--SLGEHPHQ 407 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHEN 665 +E + ++ ILL LVN ILD V+ G M+L+ DLL+ + S + + Sbjct: 408 LLELMKKNANILLRLVNQILDFRKVENGRMELHLEPF---DLLSSFRGWNDSFRMALLKK 464 Query: 666 NIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +I +V D +AD +++ +I+ +LSNA+ ++ + +++K + ++ FSV Sbjct: 465 HISFSFEVTPDTDF-RMMADSEKMERIYFNLLSNAVKYTPENGKIVVKLEAETTNYRFSV 523 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 N+GS I ++F RF G + G G+GL++V +F+ +HGG ++ S+++G T Sbjct: 524 FNSGSHISPKEVDAIFERFYQ--IDGHQAGTGIGLALVRAFVEMHGGQITAHSNEKGAT 580 >gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] Length = 675 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 10/266 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 II L NA +T ++ RA+ A + E +A +K+ F+ VS+ELR+PL + Sbjct: 257 IIGLTNAVIDITERRQAEARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 316 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ LL ++ +E I S+ ++L++D+LD++ + +G + L + L Sbjct: 317 LGWAQLLAMRPYDEATFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 374 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D+L +++I + I + + + D RL Q+F +L+NA+ F+ +G Sbjct: 375 ADVLERARETIEPMARQKQIAVDMECQ-PVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 433 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + + + +V++ G I +F+RF RR G+GLGL+I + + Sbjct: 434 IRVSVHASAEGLVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLV 493 Query: 766 NLHGGHVSISSS--DEGVTTINCRIP 789 LH G ++ +SS D G TT+ +P Sbjct: 494 ELHHGRITAASSGTDLG-TTMAVTLP 518 >gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 497 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 123/226 (54%), Gaps = 14/226 (6%) Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 NEAL+KA DE+K+ F+ ++S+E+R+PL I+GF+ LL + ++ I Sbjct: 262 NEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGDADLSRQEIMEFTSLIEK 321 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673 +S +L+ L++DILDL+ +++ M+ ++ + LN +L + A KM N+R ++++ Sbjct: 322 NSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGILESIYS--AQKM---NLRKGVELLL 376 Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D + D RL Q+ + +++NA+ F+++G I +D V++ G+ + Sbjct: 377 DLPDRAAVIYTDPTRLGQVVNNLINNAVKFTAEGRITIGYRLKDFATLEVFVEDTGTGMS 436 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 E++ +F RF Q G GLGL+I + + G + ++S+ Sbjct: 437 EEVLAHIFERFYKGDAFVQ--GTGLGLAICRTIVERFHGKIEVAST 480 >gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 649 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ + S+E+R+PL IIG + LL + +L +Q+ Y + S L L++++L Sbjct: 133 KSRLLAMASHEIRTPLNGIIGMSGLLLDT---ALTPEQATYARAVKTSGDALATLIDELL 189 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D + ++AG +L+ L L+ ++ + +A + + I D ++ S + D RL Sbjct: 190 DYSRIEAGRFELDSRPFALTALIEDIVELLAPRAQAGALEIAADIDDRVPSRVIGDAARL 249 Query: 688 LQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 Q+ + NA+ F+S G V I++ +G+ F+V++ G I + +F F A Sbjct: 250 RQVLLNLAGNAIKFTSVGGVVLIVQPGERDGEISFAVRDTGIGIAREAQTRIFGEF-EQA 308 Query: 747 HRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G R G GLGLSI + + GG +++ S +T IP Sbjct: 309 DDGIARSFGGTGLGLSISQRIVERMGGRIALDSQPGRGSTFTASIP 354 >gi|114565156|ref|YP_752670.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114336449|gb|ABI73831.1| Hpt sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 782 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E +KA + K+ F+ +S+E+R+PL I+GF+DLL + K LN + S V+ I+ Sbjct: 262 LQQTLEIAKKASQAKSEFLAVMSHEIRTPLNGIVGFSDLLTSFK---LNKEVSNTVQMIN 318 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VIS 673 S+ LL L+N++LD + DA M L+ T L DL+ S + + + VIS Sbjct: 319 ESAQTLLVLLNEVLDFSKADANKMDLDIKTFNLPDLVTSTCHSHKVSAGKKGLDFEVVIS 378 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--FIFSVKNNGSSI 730 +++ D R+ QI + +SNA+ F+ +G+ ++ + + D F+VK+ G I Sbjct: 379 PLSHENYLGDAVRVRQIINNFVSNAIKFTRQGAISIAVSEHMEASDTYITFTVKDTGIGI 438 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780 +S+F F+ R G GLGL+I + + L G + S+ DEG Sbjct: 439 AASKLESIFTPFMQADSTITREFGGTGLGLAICQQLVVLMNGRYGVESTLDEG 491 >gi|298250724|ref|ZP_06974528.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297548728|gb|EFH82595.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 757 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 99/403 (24%), Positives = 180/403 (44%), Gaps = 53/403 (13%) Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFR 464 G I F + +V DL K + + + T+D ++EG+ + PDG I +N F Sbjct: 349 GQVIAAFSAMEDEVHDLFRKSDATSQARLYTLDAIMHSMNEGLLLEAPDGHIIYANQRFT 408 Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524 N L P ++E D ++I D ++++ Sbjct: 409 QFVGLSPNDLLPPI------------FDEHKAQDALLSLIEDPDVYQQAVYAAETRSGPD 456 Query: 525 VLEYSI----------IPLPNAQTMLTFVNVTDSVRAE-------RALTEKNEALRKADE 567 V+E+ + IP+ A + F V D A + +T NEA + Sbjct: 457 VIEFYVRGYHNPIGQYIPVRRAVRLRVF-QVRDQADALIGRGKVFQDVTRTNEA----EL 511 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 IK + + VS+ELR+PLT+I G+ L + + ++ Q ++ I + + LV + Sbjct: 512 IKKNLLAIVSHELRTPLTSIKGYATSLLETDVEMESAIQEDFLRGIVIETDRMAELVTSL 571 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687 LD++ ++AG +KL+ L+ L +K ++ + E +RI++ L D +R+ Sbjct: 572 LDMSQIEAGTLKLSSGLYPLDVL---IKHALPEQERE-KVRIRLPVKPSL--IDVDGKRI 625 Query: 688 LQIFSKILSNAMDFSSKGS--TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741 + +L NA ++ + ++++ +++G+ SV +NG+ IP D+ + +F R Sbjct: 626 EMVLRNLLQNARRYAGADALIEIVVRYEQEDGEVKGGLYLSVIDNGAGIPADLTERIFER 685 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 F V + R GVGLGL+I FI HGG + + +G T Sbjct: 686 FYQVDSGRRRSSSGVGLGLAICRGFIEAHGGRIWAENRADGAT 728 >gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22] gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22] Length = 513 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 126/507 (24%), Positives = 230/507 (45%), Gaps = 53/507 (10%) Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDEL 355 KE+ Q + E+L+ L + IFD N +Q + ++F EL +PS +++ Sbjct: 13 KEMEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HVHPSVNDM 64 Query: 356 LEFLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG- 411 L F N+L + LN K E+I S + + ++T+ LP + V T P G Sbjct: 65 LPF--PTNRLFKLLNKK---EDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGE 119 Query: 412 ------------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--K 457 ++ F N+TV++ E NT ++ + + F D R Sbjct: 120 FATIRDRTNLNKILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEH 179 Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----ERKS 513 L PA E N L+ ++ I + +D + + + T+FD + Sbjct: 180 LGIPA------GENNTLTMEEYVNMIHPDDRQPM--ADAFVVQLSGNTTFDKTVPFRLRR 231 Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 GT E + I + + +++ + E L E + ++D +K +F+ Sbjct: 232 GDGTWEWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFL 291 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 ++S+E+R+PL I+GF+D++ ++ +++ +V IS +S L+ L++DILDL+ + Sbjct: 292 ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKI 351 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 ++ +K +S LN L+ ++++ A K + I IK + + D RL Q+ Sbjct: 352 ESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKSLLPDEDVYINTDITRLKQVICN 410 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 ++NA F+ KG + DN + IF V++ GS IP++ +F+RF Sbjct: 411 FINNARKFTQKGY-IHFGYTLDNRNADSVQIF-VEDTGSGIPQECLNEIFDRFYKVDTFK 468 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776 Q G GLGLSI ++ + G +S+ S Sbjct: 469 Q--GTGLGLSICKTIVEHLQGDISVKS 493 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 131/260 (50%), Gaps = 23/260 (8%) Query: 529 SIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 SI P+ + +T FV ++T+S R L E + K+ F+ ++S+E+R+P Sbjct: 620 SISPIRDDHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTP 679 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L IIGF L ++ L ++Q Y+ ++ ++T LL ++N+ILD + ++AG ++ ++ Sbjct: 680 LNAIIGFNTLALETQ---LTAQQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHA 736 Query: 644 TI----VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698 VL +++N +Q A K + +++ SD V D RL Q+ ++ NA Sbjct: 737 VFNPREVLQNIINLFQQQAAHK----GLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNA 792 Query: 699 MDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F+ +G+ + + + G FSV++ G + D +F F R+ Sbjct: 793 VKFTEQGAVSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFG 852 Query: 753 GVGLGLSIVESFINLHGGHV 772 G GLGLSI + + L GGH+ Sbjct: 853 GTGLGLSISKRIVELTGGHI 872 >gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas atlantica T6c] gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 781 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +A + KA + K F+ +S+ELR+PL I+G + +L+ +K L+ +Q + Sbjct: 267 RDITERKQAENIVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTK---LDKEQFAW 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I AS L N+ NDI+D+ + ++L+ T+ + D E+ I + + Sbjct: 324 VSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGLAF 383 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVK 724 L FV D RL QI +L NA+ F+ KG + A+ +GD I F V Sbjct: 384 DTEIREPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAQTSGDGISHVTFRVG 443 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP+ +F + V+ G G+GL+I + ++L G + +SS T Sbjct: 444 DTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGEIKVSSEIGKGT 503 Query: 783 TINCRIP 789 + +P Sbjct: 504 CFSVELP 510 >gi|134291304|ref|YP_001115073.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134493|gb|ABO58818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 745 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 16/266 (6%) Query: 526 LEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVS 577 L ++ PL + +++ V VT+ V A L N LR A++ K+ F+ + Sbjct: 316 LHFNPQPLADGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLG 375 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637 +ELR+PLT I +L++ + I ++ L++D+LD++ + G Sbjct: 376 HELRNPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGK 431 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697 + L + L D+++ + + + + R+ V +D + D RL Q+ + +L+N Sbjct: 432 ITLKKEAVRLADIVDRAVEVASPLLEQRRHRLHVDTDPEARCH-GDPVRLSQVVANLLTN 490 Query: 698 AMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 A ++ G + + A R +G + V +NG+ IP D +S+F F + ++ G+ Sbjct: 491 AAKYTLPGGDIAVHAQRGADGSTLIEVHDNGAGIPPDRLQSIFEPFYRIDGDNKQAHGGL 550 Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780 G+GL++V S +NLHGG V S+ G Sbjct: 551 GIGLALVRSLVNLHGGTVRADSAGPG 576 >gi|149201429|ref|ZP_01878404.1| hypothetical protein RTM1035_17427 [Roseovarius sp. TM1035] gi|149145762|gb|EDM33788.1| hypothetical protein RTM1035_17427 [Roseovarius sp. TM1035] Length = 510 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/447 (21%), Positives = 182/447 (40%), Gaps = 43/447 (9%) Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI 168 D+D F W+ F + L + E +R GQS L AE + ++ + + A LR Sbjct: 78 DSDWSRFRLWMGFR-FGDLPQDQEDMRL-GQSLCLQAE--DGASLTLTRQEHSLRAVLRD 133 Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228 + + A + L+ ++ + VW + AG ++W N S + Sbjct: 134 TAPADAITRHAAAQERYDLLARALAA-----EHAPMPVWIMNAAGTVIWHNDSARAVPPA 188 Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288 S + +I + +S + + +H Y + + G Sbjct: 189 H---------VSPLTAQPDIPPELGETSCVRLDLAGDTGQPDH----IYDLHVTRTALGY 235 Query: 289 AGIAIDVSKEI---TVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344 A D+++ I T+ + T + +LT + +FD+ + L N + +L + Sbjct: 236 IHHAQDITRLIRAETLQREFVQTLSKTFADLTTGLVVFDRAKTLAIFNPALTDLTGLPAE 295 Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHV 402 FL+ PS + LR +PE N+ +W+ I + KS+ + + W LP+GQT V Sbjct: 296 FLSARPSLFGFFDALRDRMVMPEPKNYASWRSQITDMVKSATGGLYHEVWTLPSGQTYRV 355 Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462 +P G ++FE+++++V ++ + ++ ID L EG+AV DGR+ N A Sbjct: 356 TGRPHPDGAVAFLFEDISLEVSTTRRHRLQMDLRQSVIDCLQEGIAVLAQDGRLLFCNTA 415 Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAA---IITSFDDERKSLQ 515 F + + + + ++ A C+ Y + W D A+ + T D S Q Sbjct: 416 FGEMLGIDPDSSFADMGLHDVIAACAARYPDPGLWPEVEDRIASRRLVATLHDRAISSGQ 475 Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTF 542 +L ++PL Q+ML Sbjct: 476 AGADL--------RVVPLGRGQSMLCL 494 >gi|254205864|ref|ZP_04912216.1| sensor histidine kinase/response regulator [Burkholderia mallei JHU] gi|147753307|gb|EDK60372.1| sensor histidine kinase/response regulator [Burkholderia mallei JHU] Length = 642 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 20 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 72 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 73 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 132 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 133 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 192 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 193 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 251 Query: 783 TINCRI 788 T RI Sbjct: 252 TATARI 257 >gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51] gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 585 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L++ + K F+ VS+ELR+PLT II F ++L K +S + Q + I Sbjct: 338 LEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFE-DSSEEQILCEIK 396 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +LL+++N+ILDLA ++ G L+ T+ L D++N V+ I N+I + + Sbjct: 397 ENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVE 456 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPE 732 + D +++ +I + NA+ F+ G V ++A A D +V+++G I + Sbjct: 457 RGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISK 516 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 + +F +F V ++ Q G GLGL++ + LHGG +S+ S ++G T I Sbjct: 517 ENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFI 571 >gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C] gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C] Length = 1828 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 1333 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFA 1392 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1393 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1452 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1453 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDNGAVELVIRPAGADVPTAIREQLLEA 1512 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + D I FSV + G I +F F R+ G GLGLSI Sbjct: 1513 GSLRDADADLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1572 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1573 LLGGEIHAASEPGRGSTFTLYLP 1595 >gi|162449530|ref|YP_001611897.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161160112|emb|CAN91417.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 713 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 5/217 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+ +K+ F+ +S+ELRSPL I+G+T LL++ + S +E I + Sbjct: 313 REANRLKDEFLATLSHELRSPLNAILGWTHLLRSEPFD--EQRVSHGLEVIERNVAAQTK 370 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ D+LD++ V G + ++ + + L ++ +I + I V D + Sbjct: 371 LIEDLLDVSRVTTGKLSISAAPMALAPVVETAIDAIRPAAEAKGLTIDVSLDPDI-EVNG 429 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+ S + SNA+ F+ G +++ R +V++ G I D VF RF Sbjct: 430 DADRLQQVVSNLTSNALKFTRPGDHILVSLRRAGATAELTVRDTGEGIAPDFLPLVFERF 489 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + R G+G+GLS+V + +HGG V S Sbjct: 490 RQADSTSRRTHAGLGIGLSLVRQLVEIHGGSVVADSP 526 >gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 956 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A R + + + G I E Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786 +F F RR G GLGL I E + GG +S S E +T +N Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521 Query: 787 RIPSK 791 IPS+ Sbjct: 522 AIPSR 526 >gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ [Leptosphaeria maculans] Length = 2006 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 22/251 (8%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L++ + K+ F+ ++S+E+R+PL I G + L S LNS+Q ++V I AS+ Sbjct: 1276 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNSEQLEHVNIIKASTDS 1332 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLNL+NDILDL+ V+AG++KL+ + + LL EV + + + + + + + Sbjct: 1333 LLNLINDILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPT 1392 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNG 727 V D+ R+ Q+ ++ NA+ F+++G + ++ D F V + G Sbjct: 1393 MVKGDKFRIRQVLLNVVGNAIKFTNRGE-IFVRCKMQPPDRSGLLKEHETMIRFEVVDTG 1451 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT-- 782 E K +F RF + + Q G GLGL+I F+ LHGG + S G T Sbjct: 1452 QGFTEAEAKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFF 1511 Query: 783 -TINCRIPSKE 792 TI +P+ E Sbjct: 1512 FTIKFGLPTPE 1522 >gi|299147684|ref|ZP_07040747.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513867|gb|EFI37753.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 482 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++ +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + VI+ A +D V++ G I KS+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENRIELYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|89893853|ref|YP_517340.1| hypothetical protein DSY1107 [Desulfitobacterium hafniense Y51] gi|219668229|ref|YP_002458664.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|89333301|dbj|BAE82896.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538489|gb|ACL20228.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 464 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 3/230 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + K +++KN F+ VS+ELR+PLT+I+G+ L++ K + + I+ S Sbjct: 231 EEITKKEKLKNDFISSVSHELRTPLTSIMGWAITLQSEKFQQ-KEMLNDGLGIIAKESER 289 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L +V ++LD + +G +KL+Y + + +L+ +++ + + I+ V L Sbjct: 290 LTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATRETIQFTVDYPENLPD 349 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D RL Q+ IL NA++F++ +V +A D+ F++ +NG I V Sbjct: 350 LLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDYTFTISDNGCGIAAGELPMVK 409 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F R G+ GLSI E I L G + I S TT+ +P Sbjct: 410 EKFYKGKSSRSRNGI--GLSICEEIITLMKGRLEIHSEVNVGTTVVITLP 457 >gi|224535356|ref|ZP_03675895.1| hypothetical protein BACCELL_00218 [Bacteroides cellulosilyticus DSM 14838] gi|224523019|gb|EEF92124.1| hypothetical protein BACCELL_00218 [Bacteroides cellulosilyticus DSM 14838] Length = 764 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 17/257 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +VT S R R L E N R A+E+ + + ++++ ++PL +I+G+ DLL S+L Sbjct: 245 DVTRSNRYRRQLEEAN---RFAEELLASREKLMLAITHDFKAPLGSIMGYADLL--SRL- 298 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++ +Q Y++ + SS LL LV D+LD +D ++N T LL E+ S Sbjct: 299 TVDGRQRFYLDNMKTSSEHLLKLVTDLLDFHRLDLNKAEINRVTFHPARLLEEIYVSFEP 358 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + +K D +L G+F++D RL QI + +LSNA+ F+S+G + + GD Sbjct: 359 LTSAKGLSLKCEIDPELKGAFISDPLRLRQIVNNLLSNAVKFTSEGGITLTASFVPKGDS 418 Query: 720 IF-------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +F SV + G + + +F F G GLGLSIV + L G + Sbjct: 419 VFPGNHLKLSVIDTGKGMDPGDRERIFQEFTRLPGAQGEEGFGLGLSIVRMLVQLLEGRI 478 Query: 773 SISSSDEGVTTINCRIP 789 + S +T R+P Sbjct: 479 EVDSVLGKGSTFTLRVP 495 >gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1572 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 12/242 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601 +N+ +S +R L E A+ K F+ ++S+E+ +P+ IIG T L LKT Sbjct: 815 LNINESKALQRELASAIEIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTE---- 870 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L +Q Y+E S+ LL ++NDILD + ++AG + + L D+L ++ + K Sbjct: 871 LTKQQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIK 930 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716 + E + + D + + + D RL QI + + +NA+ F+ GS + I K D Sbjct: 931 VAEKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLTDDE 990 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 FSV + G + + + +F F R+ G GLGL+I ++ +L GG + + Sbjct: 991 VTLKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMGGEIGV 1050 Query: 775 SS 776 SS Sbjct: 1051 SS 1052 >gi|254198287|ref|ZP_04904709.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] gi|169655028|gb|EDS87721.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] Length = 693 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1467 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G L+ + L+ K QYV+ + ++ +L Sbjct: 934 QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 991 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 992 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + D+ V+++G IP+ +F Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + I+LH G + S + Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151 >gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 1187 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + E+ L +A+E K++F+ +S+E+R+P+ IIG +L + L Sbjct: 668 WIDITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGLLELEREHTL-R 726 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S ++ S+T L+ L+ + LDLA ++AG ++L+ + L+DL + V + + + Sbjct: 727 RGETPSHGLQVAHRSATELVALIGESLDLARIEAGSLQLSLAITPLHDLFDGVIELFSAQ 786 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716 E ++ +++ S G + D RL Q+ +L NA+ F+ +G+ V + + + Sbjct: 787 AREKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVVVKVDVTSESSGS 846 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771 S++++G I + + VF F + AH G G GLGLSI + L G Sbjct: 847 TRVRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 903 Query: 772 VSISSSDEGVTTINCRIP 789 +S+ S T + +P Sbjct: 904 ISLHSEPGQGTLVTVDLP 921 >gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 568 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ A ++K F+ ++S+E+R+P+ +I+G +LLK + +++ +Q +++ Sbjct: 331 LQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKET---NVDEEQREFLNIAG 387 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 + LL ++ND+L+++ ++AG +++ +L +++ V A +++ I Sbjct: 388 TAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHID 447 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + V D R+ Q+ + ++SNA+ F+S+G T+++ + IF+VK+ G I D Sbjct: 448 ENVPDKVVGDATRIRQVLNNLISNAVKFTSEG-TIVVSIYWEAEKLIFAVKDEGIGIAAD 506 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +F F R+ G GLGL I +++ GG + + SS EG T Sbjct: 507 KINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGEGTT 558 >gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 427 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 11/251 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++ + +N L++ +K+ F+ +S+ELR+PL IIGF+ +L K G +N Q Sbjct: 159 RKQQQIYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDINETQRDM 218 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + ++ LL L++DIL+L+ ++AG ++L + L L+ E + + + + + + Sbjct: 219 LGRVLSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITPKQLDL 278 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-----NG---DFI 720 KV D R+ Q+ +LSNA+ F+ GS TV +K+ NG + + Sbjct: 279 KVDITLNDPIITNDPTRVRQVLINLLSNAIKFTQHGSITVSIKSLTTKHSCMNGGSEEIL 338 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 SV + G I + +F F + R R G GLGL+I S + + G +++ S Sbjct: 339 LSVSDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDITVESQV 398 Query: 779 EGVTTINCRIP 789 + +T RIP Sbjct: 399 DKGSTFRVRIP 409 >gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] Length = 412 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 123/237 (51%), Gaps = 13/237 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620 RK DE++ F+ VS+ELR+PLT+I G+ + L L +K+ ++++ I S + Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLENKELVKRFLKIIEEESARM 236 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ND+LDL ++ + + L +++ V + I EN + + V + + Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVK- 295 Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736 +++RL+Q+ ++ NA+ ++S KG + A D D+ + VK+ G IP++ Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGIPKESQS 354 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F +F V A + G GLGL+IV++ ++ HGG + + S T + +P + Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411 >gi|253998768|ref|YP_003050831.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4] gi|253985447|gb|ACT50304.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4] Length = 906 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 110/207 (53%), Gaps = 4/207 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT+++G D L+ + + S + +E + + + L Sbjct: 670 ESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAP--DMPSDRHAQLETLYDQAFRMQQL 727 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD+A + AG ++LN VL ++L +++ ++ I + + + L F D Sbjct: 728 VVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPLLQF--D 785 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 L ++F +L NA +S +T+ + A + G+ +V + G +P M +F +F Sbjct: 786 AVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIFQKFT 845 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGG 770 + GVGLGLSI ++ I HGG Sbjct: 846 RGKVESPQPGVGLGLSICKAIIQAHGG 872 >gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22] gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 499 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S L+ L++DILDL+ +++ +K +S LN L+ ++++ A K + I IK Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKS 374 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNG 727 + + D RL Q+ ++NA F+ KG + DN + IF V++ G Sbjct: 375 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGY-IHFGYTLDNRNADSVQIF-VEDTG 432 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S IP++ +F+RF Q G GLGLSI ++ + G +S+ S Sbjct: 433 SGIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVKS 479 >gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2] gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2] gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395] gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] Length = 1020 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L++E + + ++ E I + D + + Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 617 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 618 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713 >gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 775 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 20/237 (8%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQY 609 E A+ +K + A IK F+ ++S+ELR+PL +IGFT LKT L +Q++Y Sbjct: 276 VELAIAKKRA--QDAARIKTEFLANMSHELRTPLNGVIGFTRQTLKTP----LTIQQTEY 329 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S+ LLN++NDILD + ++A + L +L D ++EV + NI++ Sbjct: 330 LYIIERSANHLLNIINDILDFSRLEADKLVLENVPFLLQDTIDEVMVLLTLSAKSKNIQL 389 Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724 D ++ + V D RL QIF+ I+ NA+ F+ +GS I L+ + +V Sbjct: 390 THHVDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQGSVEIKINLLQQKHHKINLEITVS 449 Query: 725 NNGSSIPEDMCKSVFNRF-VSNA----HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + G I + +F F +NA H G G GLGL I I GG++S +S Sbjct: 450 DTGIGISPEQQPHLFQAFHQANASISRHYG---GTGLGLVITRKLIQEMGGNISFTS 503 >gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 968 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 13/246 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +ALT E+ A+ K++F+ +S+E+R+P+ +IG +LL ++ L+S Q V Sbjct: 440 QALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTE---LDSDQRDLVST 496 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S LL +++D+LD + ++AG ++L + L+ +++ V Q+I+ ++ I Sbjct: 497 TRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSISTF 556 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVK--N 725 D L V AD RL QI + NA+ F+++G V + R + G + S++ + Sbjct: 557 VDPGLPPLVLADPVRLRQILFNLAGNAVKFTAQG-LVAIHVGRCGTDEQGRVMVSIRVVD 615 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I + + +F F RR G GLGLSI ++L G S ++ Sbjct: 616 TGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNVGSS 675 Query: 784 INCRIP 789 CR+P Sbjct: 676 FWCRLP 681 >gi|313200853|ref|YP_004039511.1| osmosensitive k channel his kinase sensor [Methylovorus sp. MP688] gi|312440169|gb|ADQ84275.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. MP688] Length = 906 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 110/207 (53%), Gaps = 4/207 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT+++G D L+ + + S + +E + + + L Sbjct: 670 ESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAP--DMPSDRHAQLETMYDQAFRMQQL 727 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD+A + AG ++LN VL ++L +++ ++ I + + + L F D Sbjct: 728 VVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPLLQF--D 785 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 L ++F +L NA +S +T+ + A + G+ +V + G +P M +F +F Sbjct: 786 AVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIFQKFT 845 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGG 770 + GVGLGLSI ++ I HGG Sbjct: 846 RGKVESPQPGVGLGLSICKAIIQAHGG 872 >gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 843 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/395 (23%), Positives = 185/395 (46%), Gaps = 57/395 (14%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-------------A 484 + I+ +SE ++ GR+ + N +R+++ + L PG I A Sbjct: 454 DAIESVSEAFVLWDRHGRLLMCNRNYRNVFSLDPKLLKPGAARAEINRRAALAIKQDHSA 513 Query: 485 ATCSRYYNESD-----------------GWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527 ++ E++ G + AA IT+ ++ ++ + L+ L+ Sbjct: 514 PDAAKGVREAELMDGRWIQISERRTAEGGLVMTAADITAIKNQDEARR-----LNQEQLQ 568 Query: 528 YSIIPLPNAQTMLTFVNV---TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584 ++ L +Q L + T+ VRAE A+ K+ F+ ++S+ELR+PL Sbjct: 569 NAVAGLERSQEQLAELARKYETEKVRAE-----------GANRAKSEFLANMSHELRTPL 617 Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 I GF++++ G L ++ + Y + I +S LL L+NDILD++ ++AG M L + Sbjct: 618 NAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 677 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + + D+ + + + + + ++ I L AD + + Q+ +LSNA+ F+ Sbjct: 678 PMHVEDVAEDAVRLVRNRAEAAGLNLR-IDFPPLPEIEADYRAIKQVLLNLLSNAIKFTP 736 Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 + +V L A RD GD + SV + G I ++ + F V + +G GLG Sbjct: 737 RAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKEDLARLARPFEQVESQFSKTTQGTGLG 796 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 L++ +S I++H G + ++S+ TT++ +P ++ Sbjct: 797 LALTKSLISMHDGALEMTSTPGEGTTVSFALPIRQ 831 >gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] Length = 935 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 9/226 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A++ K+ F+ ++S+ELR+PL +I GF LL + G+L+++QS Y++ I SS LL L+ Sbjct: 285 ANQAKSVFLANISHELRTPLNSIDGFIHLLL--RQGNLSNEQSLYLQTIRKSSAHLLALI 342 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LD + +DAG ++L + L + + +V ++ + +I + +DG + D Sbjct: 343 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYADGVPKHIIGD 402 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 R QI + ++SNA+ F+ G ++ +G FSV+++G + K +F Sbjct: 403 ALRFKQILTNLISNAIKFTPDGEIIVRARMEHDGMDQCVLHFSVQDSGIGLSGTDRKKLF 462 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F R+ G GLGL+I + ++L G + + E T Sbjct: 463 ESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPT 508 >gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 706 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 12/255 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R E L E A K +F+ +S+ELR+P+ I+G T LL S LN Sbjct: 438 DITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGILGMTQLLLESD---LN 494 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + ++ + S+ LL ++ DILD +DA ++L ++ +V A + Sbjct: 495 ERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAE 554 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDN 716 + + + S FV D +RL QI K+ +NA+ F+ +G + A + Sbjct: 555 KKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHEGEIRLATWLDTETPAGGS 614 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 G V + G IP+ + +S+F FV +H + G GLGL+I GG +S+ Sbjct: 615 GRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLSV 674 Query: 775 SSSDEGVTTINCRIP 789 S + + IP Sbjct: 675 ESEPDQGSRFTLSIP 689 >gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+] gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+] Length = 2091 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 15/221 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A + K+ F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ LL Sbjct: 1405 LKEAMDSKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLL 1461 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKLN+ L+ +V + ++T + + + + + ++V Sbjct: 1462 MIINDILDLSKVDAGMMKLNFEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1521 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGD----FIFSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F+S+G VI+ + G FSV + G Sbjct: 1522 KGDKVRIRQVLLNVIGNAIKFTSQGEVFSRCKVIVPEGVELGKAEIMLEFSVIDTGRGFT 1581 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 E + +F F + + Q G GLGL I LHGG Sbjct: 1582 EQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGG 1622 >gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1131 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ + + Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSQLMQSEMTEPTHLGRG 785 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A E Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSVILSGKIRLQAERFDIAGLVRSTLELMQPTALA-RE 842 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDIEDERLRLCVQ 901 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGILDASSAGEG 959 >gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger] Length = 2262 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%) Query: 552 ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL + EA +KA + K+ F+ ++S++LR+P+ +IG ++LL Sbjct: 1780 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1839 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K +KL + +Q +YVE I + LL L+NDILD + ++AG MK++ + + + ++EV Sbjct: 1840 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1896 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711 +++ + + D V D RL QIF +LSN+ F+ KGS TV K Sbjct: 1897 VRALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 1956 Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 +R+ + SV + G I E+ +F F S A R G GLGLSI ++ I Sbjct: 1957 VSREGKGRVRLECSVSDTGIGISEEQKSRLFRPF-SQADNSTARSYGGSGLGLSICKAII 2015 Query: 766 -NLHGGHVSISSSDEGVTTI 784 ++ GG + + S+ TT+ Sbjct: 2016 EDVLGGAIWLDSTSGVGTTV 2035 >gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1] gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1] gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + ++ FV +VS+ELR+P+T I G+ + L+T L + + VE I S L Sbjct: 216 LRRLENVRKDFVANVSHELRTPITAIRGYAETLQTGALQD-PTVAPKMVEIIHRQSERLS 274 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L+L+ +++ MKL ++ + L + ++ K NIR+++ L + Sbjct: 275 ELVEDLLELSRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDLRAR- 333 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D + + Q+ +L NA+ ++ G V ++ ++NG + VK+ G I +F R Sbjct: 334 GDERAVEQVLLNLLDNAVKYTPAGGRVDVRGTQENGRCVVRVKDTGVGIEPKHLSRIFER 393 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 F +G+ R G GLGLSIV+ + G V + S Sbjct: 394 FY-RVDKGRSRDMGGTGLGLSIVKHLLGAMEGEVKVES 430 >gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1150 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ + + Sbjct: 748 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 804 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A E Sbjct: 805 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 861 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 862 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 920 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 921 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 978 >gi|104774696|ref|YP_619676.1| two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514823|ref|YP_813729.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423777|emb|CAI98783.1| Two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094138|gb|ABJ59291.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126517|gb|ADY85847.1| Two-component sensor histidine kinase homolog [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 402 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623 ++ K+ + +VS+++R+PLT+IIG+ LLK G++ S++ +Y+ + + +L Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ND+ + T+ + KLN + I + ++ +V + + I V + AD Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742 ++L+++++ ++SNA+ +++ S + L A N + + V+NNG IP+D K +F+RF Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V ++ + G GLGLSIV+ + LHGG + S+ + Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGGVELHGGTIRCESNKD 379 >gi|220911578|ref|YP_002486887.1| histidine kinase [Arthrobacter chlorophenolicus A6] gi|219858456|gb|ACL38798.1| histidine kinase [Arthrobacter chlorophenolicus A6] Length = 497 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 18/243 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA +K++ FV S+ELR+PLT I G+T+L++ ++ + + ++S + + + S Sbjct: 259 EARQKSETKVRQFVADASHELRTPLTAIRGYTELMRMTEDFTPDGQKS--LARVQSQSER 316 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+L LA +D G L + + L L+ E + R+ + ++ L Sbjct: 317 MTALVEDLLLLARLDEG-QPLKLAEVDLTQLVVESVSDEKVMAPSHTWRLDLPAEPVL-- 373 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +L Q+ +LSNA + G+TV+ +G + +V ++G IP D V Sbjct: 374 VNGDGAQLRQVLMNLLSNARKHTPAGTTVVAGVGTAPDGAAVVTVTDDGGGIPADFVDHV 433 Query: 739 FNRF----VSNAHRGQRRGV-------GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 F+RF + RG + G GLGLSIV+S + HGG V+++S G+T R Sbjct: 434 FSRFARADAARKGRGDQAGAAVAEGTSGLGLSIVQSIVEAHGGRVTVTSR-PGMTEFALR 492 Query: 788 IPS 790 +PS Sbjct: 493 LPS 495 >gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] Length = 831 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 124/256 (48%), Gaps = 5/256 (1%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 M + T+ R E L + L +A+ K+ F+ + +ELR+PL I +L+K + Sbjct: 425 MKVMRDQTEQKRLEDELRKTAADLSEANRRKSEFLATLGHELRNPLAPIRMGLELMKMA- 483 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 +K + + ++ L++D+LD++ + G ++L + + +++ + Sbjct: 484 -ADSPAKMEEIRGMMERQVLQMVRLIDDLLDVSRITRGKLQLRICRVAVANVVQNAVEMA 542 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E + ++ V + AD RL Q+FS +L+N+ ++ +G + L A R D Sbjct: 543 RPFIDEADHQLTVAVPPQPIHLDADPNRLAQVFSNLLNNSAKYTPEGGHIWLSAERQGSD 602 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + ++++NG IP DM S+F F V G+G+GL++V+ + +HGG + S Sbjct: 603 VVVTIRDNGIGIPADMQTSIFEMFTQVDRPLEQGYTGLGIGLTLVKQLVEMHGGRIDARS 662 Query: 777 SDEGV-TTINCRIPSK 791 G + R+P K Sbjct: 663 EGSGRGSAFEVRLPLK 678 >gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 489 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A ++L ++++++ + V V++ELR+PL NI G+ +LL+ L + E Sbjct: 228 AFNAMADSLSRSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTPETLASLYE-- 285 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +++L LV D+ D++ +AG + L I L D+ ++ Q + + E + + V Sbjct: 286 --ETSLLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSI 343 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L AD++R+ QI +LSNA+ + + L A SV++ G I + Sbjct: 344 PSDLPHIEADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAGVHISVRDTGVGIAPE 403 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF R G GLGL+IV+ + HGG VS+ S Sbjct: 404 HLPYLFERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVES 448 >gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola 23] Length = 409 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EK + KA ++K+ F+ ++S+E+R+PL I GF+ +L + + ++ E I ++ Sbjct: 31 EKAQKAEKASKMKSLFLANMSHEIRTPLNAIEGFSRVLVET---DSQDDRMKFFEIIESN 87 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L++LVN+ILDL+ V+AG + + S+ LN L + +K + E +++ Sbjct: 88 NNRLMSLVNEILDLSRVEAGEITMKKSSTDLNQLCDSIKNLFKFRCPE-TVKLSWKKPNM 146 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDM 734 +F D R+ Q+FS ++SNA+ +S GS D G I F V++ G+ I PED+ Sbjct: 147 AVTFNTDANRITQVFSNLISNALKHTSAGSITYGYRMLDEGSNIEFFVQDTGTGIAPEDL 206 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +FN +VS G GLGL++ + + GG + + S Sbjct: 207 -QHIFNTYVSRDAETNNNGYGLGLALCKIIVEKLGGKIYVES 247 >gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 664 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 10/245 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + EA KA++ K+ F +++ELR+PL +IGF+ +L K +L +V Sbjct: 318 KRLQKAVEAAIKANQSKSVFFSKITHELRTPLHAVIGFSQIL--GKDPNLPEHLKGFVNS 375 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + LL ++NDILDL+ ++AG M + L L + + + + E +I ++I Sbjct: 376 LYENGVHLLGMINDILDLSKIEAGKMTESREKFSLVQLWDTLFSMFSYRFAEKHILFELI 435 Query: 673 SDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFI-FSVKN 725 + + F AD Q++ QI +L NA+ F+++G I + N D + F VK+ Sbjct: 436 HPETIKNQYFEADLQKIRQILVNLLGNALKFTNQGFVNMEVKIKQGLEPNIDLVSFIVKD 495 Query: 726 NGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP+D S+F F + G GLGLSI ++ GG + + S +T Sbjct: 496 TGIGIPKDQLHSIFEAFQQTEQGSSYQEGTGLGLSISHQLVDFLGGTIQVDSDTNQGSTF 555 Query: 785 NCRIP 789 +P Sbjct: 556 IFELP 560 >gi|161986555|ref|YP_309969.2| hybrid sensory histidine kinase TorS [Shigella sonnei Ss046] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|323947218|gb|EGB43226.1| TMAO reductase sytem sensor TorS [Escherichia coli H120] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|262383486|ref|ZP_06076622.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294384|gb|EEY82316.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 638 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 129/248 (52%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721 E I K +D++RL Q IL NA+ F+S G I + + D D Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSADAQDVRL 571 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628 Query: 781 VTTINCRI 788 CRI Sbjct: 629 ----GCRI 632 >gi|90020053|ref|YP_525880.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89949653|gb|ABD79668.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 498 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASST 618 EA +++ K+ F+ ++S+ELR+PL +IIGF+ +LKT + +L+ +Q + IS S Sbjct: 263 EAAEASNQAKSDFLANMSHELRTPLNSIIGFSKRILKTQE--NLDERQVHSLGVISRSGE 320 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL L+ND+LDL +DAG M+++ L + + H +R+ + + L Sbjct: 321 HLLQLINDVLDLTKIDAGRMEISPRPTDLTQVCRYAIEDQQEAAHSKGLRLTLHAPETLV 380 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737 V D R+ Q+ ++SNA+ +S +G V+ A R D I V+++G I + K Sbjct: 381 GEV-DELRIRQVMLNLVSNAVKYSEQGEIVV--ALRYVDDAIEICVEDSGIGIKAEDQKR 437 Query: 738 VFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF + + RG GLGL IV F+ LH G + + S + +PSK Sbjct: 438 LFKRFEQFDMQSRMQIGRGSGLGLYIVNEFVRLHKGWLKVESEYGRGSRFYVYLPSK 494 >gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21] gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21] Length = 984 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + I D + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|229191305|ref|ZP_04318291.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876] gi|228592110|gb|EEK49943.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876] Length = 448 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S + Sbjct: 222 IKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSE--EERNHYLQIIEGESKRMS 279 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +L +L LA++D L L + +V + K E +I ++ + D + Sbjct: 280 SLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK-- 337 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F+ Sbjct: 338 -GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIFD 396 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 397 RFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447 >gi|326441348|ref|ZP_08216082.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 694 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + + V V++ELR+PL+NI G+ L+ ++ G + + +V+ + + L ++++D+ Sbjct: 456 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 511 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA DAG ++L + +LL +V + + E ++V + AD RL Sbjct: 512 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 571 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q +LSNA+ + +G +V L+AA V + G I + VF+RF Sbjct: 572 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 631 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV HGG V++ S Sbjct: 632 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 661 >gi|120603325|ref|YP_967725.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120563554|gb|ABM29298.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 667 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 26/261 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA R + E +A A K SF+ +S+E+R+ L I+G T+L+ + L+ +Q + Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTP---LSGEQRES 179 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + ASS LL L++D+LD + ++A ++L L+ LL +V Q+ ++ NI + Sbjct: 180 LNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISL 239 Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDN 716 +V D D RL Q+ + ++ NA+ F+ KGS +I L++ + Sbjct: 240 DFRVTPDVP-DRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPD 298 Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 G +FS+++ G I ++ +++F F A +R G GLGL+I + + + G Sbjct: 299 GPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMG 358 Query: 770 GHV-SISSSDEGVT-TINCRI 788 G + + SS +G + CR+ Sbjct: 359 GSIWARSSEGQGSSFHFTCRL 379 >gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1269 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 20/262 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTS 597 +T + T++ R E R A+E K++F+ ++S+E+R+P+ ++G + +L+ Sbjct: 632 FITILRATETARME------ERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILREC 685 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 K + K +Y + I + LL+L+NDILD + ++AG M++ + + +LN+V Sbjct: 686 K----DEKILEYAQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNM 741 Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--R 714 + K + + +K D L + D RL QI +L+NA+ ++ +G V L+A R Sbjct: 742 VHIKAEQKILDLKFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGG-VTLEATGIR 800 Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769 D GD I + + G I ++ ++F++F R G GLGL+I S + L G Sbjct: 801 DYGDTITLKIKITDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMG 860 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G + + S +T +P K Sbjct: 861 GSIMVDSVYGKGSTFTIVLPQK 882 >gi|298376092|ref|ZP_06986048.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298267129|gb|EFI08786.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 638 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721 E I K +D++RL Q IL NA+ F+S G I + D D Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYPADAQDVRL 571 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 628 Query: 781 VTTINCRI 788 CRI Sbjct: 629 ----GCRI 632 >gi|293433288|ref|ZP_06661716.1| TMAO reductase system sensor TorS [Escherichia coli B088] gi|291324107|gb|EFE63529.1| TMAO reductase system sensor TorS [Escherichia coli B088] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1047 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 20/243 (8%) Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 A++ L E + ALRKA+ E K +F+ VS+E+R+P+ I+ ++++ + LN Q Sbjct: 153 AKKKLIEADLALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENT---VLNDTQR 209 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I S LL+L+ DILD + ++AG M+L + +L E + T E ++ Sbjct: 210 DFLSCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDL 269 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD----- 718 I + + + V D R+ Q+ LSNA+ F+ KG ++ L + N D Sbjct: 270 EILLTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPKGHVIVRVKLDKSNPNQDSSSLV 329 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V+++G I E+ S+F F+ QR+ G GLGLSI + L GG ++ Sbjct: 330 DYTVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEIT 389 Query: 774 ISS 776 + S Sbjct: 390 VRS 392 >gi|260854697|ref|YP_003228588.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] gi|257753346|dbj|BAI24848.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 790 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 16/251 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTD 592 L +VT+ ++ L E+ LR +A+++K+ F+ +S+++R+P+ I G Sbjct: 241 LDITDVTELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLIS 300 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + + + ++ + + SS LL+L+NDILD++ +++G M+L ++ Sbjct: 301 IARDCVNDPVKIREC--LNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFID 358 Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 ++ ++ + + I V I++ + D +L QI S +LSNA+ F+ G V L+ Sbjct: 359 DIVSAVYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQ 418 Query: 712 AA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFI 765 + + +F+V +NG + D+ + VF F + HR R G GLGL+IV S++ Sbjct: 419 VEEGQRIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQDVRHRENRGGSGLGLAIVHSYV 478 Query: 766 NLHGGHVSISS 776 L G V + S Sbjct: 479 QLMNGRVDVES 489 >gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 867 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 176/363 (48%), Gaps = 40/363 (11%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENR------LSPGTHIRNIAATCS 488 + +H + + + P G+I NPAF +L + E R L G + +N+ Sbjct: 242 AQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKTLSELLQGPNTQNV----- 296 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FV---- 543 + SD + T + KS Q E + P+ N + F+ Sbjct: 297 QLQKFSDSIQNHQPVRTEVLNYTKSNQPYWG-------ERDLSPVMNEHGQVQRFIVVER 349 Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ + E+ L+++ + +A + K+ F+ ++S+E+R+P+ I+GF+++L S+ Sbjct: 350 DISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLESE---KR 406 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q + + S+ L+ L+NDILD + V+AG + L L +L V+ S A + Sbjct: 407 NEQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLREL---VESSTALCAY 463 Query: 664 ENNIR-IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDN 716 + N + +K++ D L + DR R+ QI ++ NA+ F+ +G +I K Sbjct: 464 QANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQG 523 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + F V + G IPE+ + ++F V N+ + G GLGL+I + + ++GG +S+ Sbjct: 524 NVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSV 583 Query: 775 SSS 777 +S+ Sbjct: 584 TST 586 >gi|104773777|ref|YP_618757.1| two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513783|ref|YP_812689.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422858|emb|CAI97518.1| Two-component system, sensor histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093098|gb|ABJ58251.1| Signal transduction histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 521 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L NE ++ +E ++ F+Q V++E+R+PLT I G + +K + + +S ++ Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + L+ LVN+ LD + +G +++ S ++N+V+Q + +N +I + Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNAWTIMNDVQQQLTQNAAKNGDKIILD 382 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + AD+ R Q+ + NA+ F++ G T+ L+ R FSV++ G + + Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440 Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + K +F RF + A G GLGLSIV S + HGG + IS EG T Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495 >gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 837 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 16/270 (5%) Query: 533 LPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 L NA L F ++++ AE+AL + A + K+ F+ +S+E+R+P+T I+ Sbjct: 254 LTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHEIRTPMTAIL 313 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G +L+ + L + Q ++V I S LL L++DIL ++ + ++ Sbjct: 314 GVAELMSGTHLDRV---QREHVSIIRRSGDALLELIDDILVISQNEGAQEGEKQVVFDVD 370 Query: 649 DLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 LL V + + E I+ + ++ + D RL Q+ ++ NA+ FS KG Sbjct: 371 HLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGNAIKFSEKGEV 430 Query: 708 VI-LKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760 VI ++ NG D+ FSV +NG IP + +++F+ F RR G GLGL+I Sbjct: 431 VIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESRRFGGTGLGLTI 490 Query: 761 VESFINLHGGHVSISSSDEGV-TTINCRIP 789 +NL GG + + S+ GV +T IP Sbjct: 491 CRRLVNLMGGQLELLFSEPGVGSTFAFDIP 520 >gi|288941589|ref|YP_003443829.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896961|gb|ADC62797.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 755 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 10/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + ERA E A A K+ F+ H+S+ELR+PL +IG T +L+ + +L Sbjct: 136 DITERKQTERAQVEAKLAAEAATAAKSDFLAHMSHELRTPLNAVIGLTQVLEQA---NLP 192 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q V+ I + +L + NDILDLA ++A + + L+ LL ++ Sbjct: 193 LEQRSLVQRIRLAGQAMLQISNDILDLAKIEANQLAIASRPCTLSGLLQRLESLQGEAAR 252 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718 + +++ L G + D RL QI + ++SNA+ F+ +G+ T L + + Sbjct: 253 AKGVTLEIAPAPALSGQVLTDPLRLEQILANLVSNAIKFTDRGTVRVWTETLSVSESSAR 312 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I + +F F+ RR G GLGLSI + + L GG + + S Sbjct: 313 LRFVVRDTGIGIAPSALEQLFTPFIQADSSITRRFGGTGLGLSISKRLVELMGGTIGVES 372 Query: 777 SD 778 + Sbjct: 373 CE 374 >gi|220905438|ref|YP_002480750.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869737|gb|ACL50072.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1007 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 15/228 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASST 618 E ++A +++ F++ +S+E+R+PL IIG + L L+T LN Q Y+ I+ S + Sbjct: 311 ELAQRASHVQDDFLRRISHEIRTPLNAIIGMSYLSLQTD----LNGVQRDYLAQINKSGS 366 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 +LL++VN ILD ++ G ++ + DL++ ++QS+A E +R+ + D + Sbjct: 367 VLLDMVNRILDFSSASEGSIRTERKVFAVADLMDLLRQSVAGLALEKRLRLNFVLDPSIP 426 Query: 679 SFVA-DRQRLLQIFSKILSNAMDFSSKGST--VILKAA-----RDNGDFIFSVKNNGSSI 730 + VA D + L ++ +L NA+ +++ GS IL + + +F V + G + Sbjct: 427 AVVAGDERHLEEVLRILLDNAVKYTASGSVDFRILPSGEPPMRKGAIRLLFVVSDTGPGL 486 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 E+ K +F F R G+GLGL++ ++L GG + + S Sbjct: 487 GEEQWKKLFEPFTLGDESMTRSFSGLGLGLALARQLVSLMGGELKVGS 534 >gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 554 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 120/223 (53%), Gaps = 11/223 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++E K+ F+ ++S+++R+P+ I+G T + + S G + K + ++ I+ASS LL Sbjct: 171 RSSNEAKSQFLANMSHDIRTPINAIVGMTKIARES--GEASEKIAGCLDAITASSRHLLE 228 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 L+ND+LD++ +++G M+L ++D++ V+ I + + +++ S K +F Sbjct: 229 LINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRIDCSKMKHKAFS 288 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMC 735 D R+ QI + SNA+ ++ +G T+ L K F++ +NG + + Sbjct: 289 GDELRISQILLNLASNAVKYTQEGGTIALVVQELAKTRPSYASVAFTITDNGMGMSPEFV 348 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F+ F + R G GLG+SI ++ I+ GG V + S Sbjct: 349 ERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDS 391 >gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides sp. D4] gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides dorei 5_1_36/D4] Length = 748 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 YS++ ++T VN+ + E L + +A E+K SF+ ++S+E+R+P Sbjct: 485 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 543 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+GF++LL T K S K+ ++ I ++ +LL LVND+L+L+ +++G M + Sbjct: 544 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 602 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + V Q+ + IK D + + DR RL Q+ + L NA F+S Sbjct: 603 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 661 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + ++ + F V++ G+ IP++ + +F RF Q GVGLGL+I + Sbjct: 662 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 719 Query: 763 SFINLHGGHVSISS 776 + GH+ + S Sbjct: 720 VIVEKMNGHIDVQS 733 >gi|124385026|ref|YP_001026472.1| sensor histidine kinase/response regulator [Burkholderia mallei NCTC 10229] gi|238562264|ref|ZP_04609990.1| sensor histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|251767545|ref|ZP_04820150.1| sensor histidine kinase/response regulator [Burkholderia mallei PRL-20] gi|254177707|ref|ZP_04884362.1| sensor histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|254358734|ref|ZP_04975007.1| sensor histidine kinase/response regulator [Burkholderia mallei 2002721280] gi|124293046|gb|ABN02315.1| sensor histidine kinase/response regulator [Burkholderia mallei NCTC 10229] gi|148027861|gb|EDK85882.1| sensor histidine kinase/response regulator [Burkholderia mallei 2002721280] gi|160698746|gb|EDP88716.1| sensor histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|238523016|gb|EEP86457.1| sensor histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|243062373|gb|EES44559.1| sensor histidine kinase/response regulator [Burkholderia mallei PRL-20] Length = 639 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 17 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 69 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 70 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 129 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 130 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 189 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 190 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 248 Query: 783 TINCRI 788 T RI Sbjct: 249 TATARI 254 >gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961] gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10] gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10] Length = 1020 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L++E + + ++ E I + D + + Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 617 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 618 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713 >gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 758 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 130/251 (51%), Gaps = 8/251 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E+ L E E +A E+K SF+ ++S+E+R+PL I+GF+D+L S N Sbjct: 514 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFS-N 571 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ ++V+ I+ ++ +LL LV D+L+L+ +++G + + ++ LL++V Q+ + + Sbjct: 572 EERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFTFQRESVHRLLDDVYQTHSLLIR 631 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721 +K + V D RL Q+ + L+NA F +KG ++ L +G + Sbjct: 632 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKF-TKGGSIRLGYCCPSGMSEVHL 689 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V++ G IP K +F RF + Q GVGLGLSI + GG + + S + Sbjct: 690 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELRSEEGRG 747 Query: 782 TTINCRIPSKE 792 + +P E Sbjct: 748 SRFTVVLPCIE 758 >gi|254467263|ref|ZP_05080674.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I] gi|206688171|gb|EDZ48653.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I] Length = 804 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 103/409 (25%), Positives = 189/409 (46%), Gaps = 25/409 (6%) Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447 KD P LH++ P + M E++T + + + + ++ L++G Sbjct: 259 RKDGSCYPVSIKLHLLEADRPL--YVAMVEDITEKRADQEAARLANERLSDAVEALADGF 316 Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC--SRYYNESDGWDLFAAIIT 505 +F D R+ L+N + ++ + PG R I + S+ Y D D A I + Sbjct: 317 VLFDKDERLVLANSTYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPD-IDTAAFIES 375 Query: 506 SFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 + R L +SD VL+ + + V+VT+ A N A Sbjct: 376 RMEVFRAGDASQLLRISDGRVLKAYDRRTADGGYVCLRVDVTELEEARAKAEAANAA--- 432 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 K++F+ ++S+E+R+P+ I+G DL+ + L +Q ++ ++ASS LL ++ Sbjct: 433 ----KSAFLANMSHEIRTPMNGILGMLDLIADTP---LTPEQQDMLQTVTASSETLLAIL 485 Query: 625 NDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ND+LDLA ++AG +L+ +S + + ++ Q++A+ I +V + G Sbjct: 486 NDVLDLARIEAGREELDNAPFSPARVCRKVADLHQAVAS---HKGIAFEVDLGPGTEDPR 542 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ QI + NA+ F+ G V L A G + SV + G+ + ED VF+ Sbjct: 543 LGDARRIEQILHNLCGNALKFTEAGK-VRLSAWTGPGGLMLSVSDTGTGLTEDDQVRVFS 601 Query: 741 RF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F + G GLGL+IV+ + GG +S++S+ T I ++ Sbjct: 602 KFEQAGPAASALGGTGLGLTIVKELVERMGGSLSVASAPSEGTEIQLQL 650 >gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis PB1/+] gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 924 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga petrophila RKU-1] Length = 412 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620 RK DE++ F+ VS+ELR+PLT+I G+ + L L K+ ++++ I S + Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLEDKELVKRFLKIIEEESARM 236 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ND+LDL ++ + + L +++ V + I EN + + V + + Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVVVR- 295 Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736 +++RL+Q+ ++ NA+ ++S KG + A D D+ + V++ G IP++ Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQS 354 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F +F V A + G GLGL+IV++ ++ HGG + + S T + +P + Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPKR 411 >gi|18252341|gb|AAL66202.1|AF386520_1 putative ethylene receptor [Pyrus communis] Length = 741 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L LVND+LDL+ ++ G ++L +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILRSSNLLATLVNDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + + ++ + + +D + + + D +RL+Q ++ NA+ FS +GS I + Sbjct: 432 PVASVKKLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++GS I P+D+ K +F +F R G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQTLATRNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + ++NL GH+ I S G Sbjct: 550 LGLAICKRYVNLMEGHIWIESEGLG 574 >gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 872 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E LR D K+ F+ +++ELR+PL I LLK + + + K + I T Sbjct: 503 ETLRLMDRRKDEFLAMLAHELRNPLAPIRNAVRLLKMQE--ATDPKLTLSCNIIDRQVTH 560 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L++D+LD+A + G ++L L D++N ++ + + E+ + +IS Sbjct: 561 MTRLLDDLLDMARIMQGKIRLKIEHFELTDIVNNAIET-SRPLLESRKQELIISQTMTPQ 619 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 ++ D RL Q+ S +L+NA ++ +G ++L R D + +K+ G I D+ + Sbjct: 620 WLEGDHVRLAQVLSNLLNNAAKYTGEGGKIMLSVMRKGSDAVIEIKDTGIGISPDILPQI 679 Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTINCRIPS 790 F+ F H + G+G+GL++V + +HGG V+ +S EG+ +T R+P+ Sbjct: 680 FDLFTQADHTLAHSQGGLGIGLTLVRQLVEIHGGTVTAAS--EGIGQGSTFTVRLPA 734 >gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_33FAA] gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_33FAA] Length = 748 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 YS++ ++T VN+ + E L + +A E+K SF+ ++S+E+R+P Sbjct: 485 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 543 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+GF++LL T K S K+ ++ I ++ +LL LVND+L+L+ +++G M + Sbjct: 544 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 602 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + V Q+ + IK D + + DR RL Q+ + L NA F+S Sbjct: 603 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 661 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + ++ + F V++ G+ IP++ + +F RF Q GVGLGL+I + Sbjct: 662 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 719 Query: 763 SFINLHGGHVSISS 776 + GH+ + S Sbjct: 720 VIVEKMNGHIDVQS 733 >gi|187730064|ref|YP_001880809.1| hybrid sensory histidine kinase TorS [Shigella boydii CDC 3083-94] gi|187427056|gb|ACD06330.1| sensor histidine kinase/response regulator TorS [Shigella boydii CDC 3083-94] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|162449526|ref|YP_001611893.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161160108|emb|CAN91413.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1693 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 40/283 (14%) Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 LELLSD + I L NA R E A+R +++ F+ Sbjct: 1428 VLELLSDQI----AIALENA----------------RLYREAQHAVR----VRDEFLSVA 1463 Query: 577 SYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 S+ELR+P+T++ +G LL+ S + + ++ ++ + L+ L++D+LD++ + Sbjct: 1464 SHELRTPVTSLRLGLQALLRRGDHAS-DERLARALQRMDRQVQRLVRLIDDVLDVSQLHT 1522 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKI 694 G ++L+ + L +++++V + + ++ + + V ++ + GS+ DR RL Q+ S + Sbjct: 1523 GRLELHVEPVDLAEVVDDVLERLTERIAHSGSSVSVRAEPSVVGSW--DRSRLEQVVSNL 1580 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQR 751 L NA+ F + G + + AR +G V++ G IP VF+RF VS+ H G Sbjct: 1581 LDNALKFGA-GKPIEVSVARKDGTAELVVQDQGIGIPAGRLPHVFDRFERAVSSRHFG-- 1637 Query: 752 RGVGLGLSIVESFINLHGGHVS-ISSSDEGV---TTINCRIPS 790 G+GLGL +V+S + GG V +S DEG + C P+ Sbjct: 1638 -GLGLGLHVVKSIVEALGGAVRVVSRPDEGARFTVELPCERPA 1679 >gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] Length = 928 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 128/240 (53%), Gaps = 11/240 (4%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R +AL + +A + A++ K +F+ +S+++R+P+ IIG ++ + L S Sbjct: 395 TEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMA-VIAQANLQSPEKI 453 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q + I+ SS LLNL+N++LD++ +++G + L + L +L+ +V E Sbjct: 454 QD-CLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAAEK 512 Query: 666 NIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGD 718 ++ +++ +D + V D+ RL Q+ +LSNA+ ++ +G +V L+ A+ G Sbjct: 513 HLELQINADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKGKGQ 572 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F V +NG + D +F F + Q +G GLG++I ++ +++ G + + S Sbjct: 573 YEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIEVKS 632 >gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC 700345] gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 929 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGF LLKT L+S Q Y+ I S+T LL Sbjct: 295 QEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYIRTIERSATNLL 350 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++NDILD + ++AG M L L + + E +++ E + + + D ++ V Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDV 410 Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCK 736 + D R QI + ++ NA+ F+ KGS + L+ +D I + + G + E Sbjct: 411 SGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDTGIGVDEQQQS 470 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782 S+F F RR G GLGL I + +N GG + S ++G T Sbjct: 471 SLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGST 519 >gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] Length = 1209 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + +AL +A A+ K+ F+ +S+E+R+P+ +IG T LL + L N++Q Q Sbjct: 488 IEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTHL---NTQQQQ 544 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + E I +S LL+L+NDILD + +++G KL + + E +A + + Sbjct: 545 FTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQCVEECLDLVAPQAFAKKLD 604 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIF 721 + + ++ + + D R+ Q+ IL+NA+ F++ GS + +A ++ F Sbjct: 605 LVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSGSIQVRVSATVANQQQNKYTIQF 664 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 S+K+ G I D ++F F V+ + + G GLGL+I + + GG + + S E Sbjct: 665 SIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEMMGGQIWVESYGE 724 >gi|325125439|gb|ADY84769.1| Histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 521 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+L NE ++ +E ++ F+Q V++E+R+PLT I G + +K + + +S ++ Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S + L+ LVN+ LD + +G +++ S ++N+V+Q + +N +I + Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNAWTIMNDVQQQLTQNAAKNGDKIILD 382 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L + AD+ R Q+ + NA+ F++ G T+ L+ R FSV++ G + + Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440 Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782 + K +F RF + A G GLGLSIV S + HGG + IS EG T Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIRVISKPHEGST 495 >gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88] Length = 2345 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL+ EA RK A + K+ F+ +VS++LR+P+ +IG ++LL Sbjct: 1800 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1859 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ +Q YVE I + LL L+NDILD + ++AG MK++ + L + + EV Sbjct: 1860 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1916 Query: 655 KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ + ++ DG + + D RL QIF +LSN+ F+ KGS + Sbjct: 1917 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1976 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A D D V + G I + +F F S A R G GLGLSI ++ I Sbjct: 1977 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2035 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2036 EDVLGGKIWL-QSEEGVGT 2053 >gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855] gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855] Length = 757 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%) Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 YS++ ++T VN+ + E L + +A E+K SF+ ++S+E+R+P Sbjct: 494 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 552 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+GF++LL T K S K+ ++ I ++ +LL LVND+L+L+ +++G M + Sbjct: 553 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 611 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + V Q+ + IK D + + DR RL Q+ + L NA F+S Sbjct: 612 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 670 Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 +G + ++ + F V++ G+ IP++ + +F RF Q GVGLGL+I + Sbjct: 671 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 728 Query: 763 SFINLHGGHVSISS 776 + GH+ + S Sbjct: 729 VIVEKMNGHIDVQS 742 >gi|78356984|ref|YP_388433.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219389|gb|ABB38738.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 395 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 19/252 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL E +A+ K F+ +VS+ELR+PL ++G LL ++ S++ +Q + Sbjct: 143 RALERAKEKAEEANRAKTVFLANVSHELRTPLNGVLGMAQLLSST---SMSGEQRYLLAS 199 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671 + S+ L +LV+DIL+ ++++AG+++ + VL + L + + + NI Sbjct: 200 LKQSAGRLGSLVSDILEHSSLEAGMLRPSQDNFVLKEALAPLIRHFGAVADKKNILFTHT 259 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFI-- 720 + DG + DR L+QI +L NA +++S G TV L A DN + Sbjct: 260 VQDGVPRTLAGDRGALIQILHNLLDNACNYTSVG-TVDLHVALWTCENICTADNRKAVWL 318 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V++ GS IPE +F F H +R G GLGL++ GG +S S Sbjct: 319 RFDVRDTGSGIPEAKGGDIFAPFSIAEHFLTKRLGGAGLGLAVARQLAERDGGEISFVSK 378 Query: 778 DEGVTTINCRIP 789 + +T + +P Sbjct: 379 EGVGSTFSVVLP 390 >gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1] gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1] Length = 1689 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+P+ IIG + L + L K+ Y+ + ++ LLN++ Sbjct: 952 ANRAKSDFLANMSHEIRTPMNAIIGMSYLALQTDLAE---KRKDYIAKVHQAAGSLLNII 1008 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVAD 683 NDILD + ++A + + + L+++L ++ I K+ EN++R I I+ F+ D Sbjct: 1009 NDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIGFKVEENSMRLIYDIATDCPRYFIGD 1068 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVF 739 QRL QI +NA+ FS KGS ++L + F V ++G IP D +F Sbjct: 1069 PQRLGQILLNYCNNAVKFSPKGSDILLSCQAELDKQGATLTFCVADDGIGIPLDKQARLF 1128 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 + F R+ G GLGL+I + L G V Sbjct: 1129 HSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEV 1163 >gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633] gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 882 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 22/252 (8%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+ Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661 Q + V+ I SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713 + + + D + + V D R+ QI + ++SNA+ F+ +G ++ L+ Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILVDVSYEEALEQG 532 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R G F +K++G I D ++F F R+ G GLGL+I +++ GG Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590 Query: 772 VSISSSDEGVTT 783 + +++S +GV T Sbjct: 591 L-VATSTKGVGT 601 >gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 1179 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 13/248 (5%) Query: 554 ALTE-KNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 AL E + EA R+A EI K+ F+ ++S+ELR+PL +++ L ++ G+L+ Q Sbjct: 498 ALEEARTEADRRAIEIEQASRYKSEFLANMSHELRTPLNSVLILARDLADNETGTLSDDQ 557 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + I S LL L+ND+LDL+ V+AG M L+ TI DL ++ + Sbjct: 558 VESARIIHESGAHLLALINDVLDLSKVEAGKMSLDPVTIATADLAQVIRGRFGPVAADKG 617 Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724 + V S L + ADR ++ QI + ++SNA+ F+ +G + A +G + SV Sbjct: 618 LEFTVESAPDLPRTMKADRGKIEQIANNLVSNAIKFTPEGGVAVRLALDHDGQALALSVA 677 Query: 725 NNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I PED + + F + S+ R Q G GLGL+I L GG +++ S+ + Sbjct: 678 DTGIGILPEDRQRVFAAFEQADSSTSR-QFGGTGLGLTISRRLARLMGGDITLESNGDRG 736 Query: 782 TTINCRIP 789 + +P Sbjct: 737 SVFTLLMP 744 >gi|330828735|ref|YP_004391687.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803871|gb|AEB49070.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 1082 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 10/216 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ +S+E+R+P+ +IIG + L ++L Q Q VE I+ + L L++++L Sbjct: 498 KGEFLATMSHEIRTPMNSIIGMAEQLTFTEL---TQDQRQMVEVINRGAQGLHALIDNVL 554 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687 D A ++AG M+L + ++ +LL+ V +++H +RI + D + + V+ D RL Sbjct: 555 DFAKLEAGKMQLEQAPFLVRELLDSVLIMTVSEVHRKGLRIYLWVDAGVAARVSGDALRL 614 Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 QI +SNA+ F+ +G S +L F V+++G + + +FN F Sbjct: 615 RQILFNFVSNAIKFTERGFIEISVQLLVQGEGQQQLRFGVRDSGIGMSTEALGRIFNAFE 674 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R G GLGLSI ++ L GG + + S+ Sbjct: 675 QAESSTTRSYGGTGLGLSICQTLATLMGGEIRLESA 710 >gi|325921960|ref|ZP_08183768.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325547559|gb|EGD18605.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 913 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 9/221 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A +K+ F+ +S+ELR+PL I+G++ L+++ N + + I S+ ++ Sbjct: 526 ASRVKDEFLATLSHELRTPLNAILGWSRLMQSDIFEPANLGKGMVI--IERSARAQTQII 583 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGSFV 681 +D+LD++ + +G ++L + L E+ Q A E ++ + + G+L F Sbjct: 584 DDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPAAFA-REISLELDAPTQGELW-FF 641 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ + +LSNA+ F++ G TV + ++ V+++G I D VF+R Sbjct: 642 GDAGRLQQVLTNLLSNALKFTAPGGTVRVALDIEDERLRLCVQDSGMGIAADFLPHVFDR 701 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 F RR G+GLGLSI ++LHGG + SS EG Sbjct: 702 FRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSEGEG 742 >gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] Length = 1078 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 16/299 (5%) Query: 503 IITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKN 559 I +F+ ER ++ LL + LE S P + VT + + + AL Sbjct: 498 IRRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGDRITHVAVVTRDITSYKDALRRLE 557 Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 +A R+A+E K++F+ +S+E+R+PL I G +DLL S+ ++ + + + I S Sbjct: 558 DARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR---VSPEVEEGLAIIKDS 614 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675 + LL L+NDILDL+ ++AG ++L + DL+ + + + ++ +S+G Sbjct: 615 AGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEG 674 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731 D R+ QI +LSNA+ F+ +G + D + V++ G IP Sbjct: 675 LPPVVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIP 734 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + + +F F RR G GLGLSI + GG + +SS +T CRI Sbjct: 735 PEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRI 793 >gi|299529743|ref|ZP_07043178.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni S44] gi|298722261|gb|EFI63183.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni S44] Length = 943 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 12/267 (4%) Query: 525 VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L ++ +P + ++ + ++T ER+L A + +E K F +S+E+R+P Sbjct: 419 ILTFASMPYQSEDVVICGISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTP 478 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 L I+G +LL L LN +Q QY+ I SS LL +ND LDL+ ++AG +L + Sbjct: 479 LYGIVGTMELLA---LTGLNVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIA 535 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702 + +LL V + A + + I + D G S AD R+LQ+ + ++ NA+ F+ Sbjct: 536 EVSPAELLERVVANFAARAQGKGLLIYGLCDVGVPSSVRADSARILQVLNNLVGNAVKFT 595 Query: 703 SKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756 G + +A + F V + G I + +F + + G GL Sbjct: 596 EAGRVAVRVSAENLQPGRIRLKFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGL 655 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783 GL+I +L GG +S+ S++G+ T Sbjct: 656 GLAICRRLSDLMGGSLSV-VSEKGLGT 681 >gi|218553582|ref|YP_002386495.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI1] gi|218360350|emb|CAQ97900.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli IAI1] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1131 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ + + Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 785 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A E Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 842 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 901 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959 >gi|220916365|ref|YP_002491669.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954219|gb|ACL64603.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 840 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 6/232 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613 +TE A+R DE+ +Q VS++LR+PL+ + +G L + ++ + + Sbjct: 596 VTELRRAVRNRDEV----LQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARL 651 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +A+ + L++D+LDL T++ G + + DLL E + + + + + Sbjct: 652 AAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSA 711 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L DR R+LQ+ + SNA+ + +G+ + A+ +G IF V++ G IP+ Sbjct: 712 APGLPPVACDRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDA 771 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 VF+RF + RG GLGL+I + HGG + S+ TT++ Sbjct: 772 DLPHVFDRF-QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVS 822 >gi|157158585|ref|YP_001462226.1| hybrid sensory histidine kinase TorS [Escherichia coli E24377A] gi|332279822|ref|ZP_08392235.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] gi|157080615|gb|ABV20323.1| sensor histidine kinase/response regulator TorS [Escherichia coli E24377A] gi|332102174|gb|EGJ05520.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 946 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 15/231 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E +A+ IK+ F+ +S+ELRSPL I+G+T LL+T KL +++ V I + + Sbjct: 568 EKAERANRIKDEFLSILSHELRSPLNPILGWTQLLQTKKLEEQQVEEALAV--IERNVKL 625 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L++D+LD+A + G + LN + + L+ + + + NI +KV +S+ Sbjct: 626 QTQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNN--C 683 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D+ R+ QI +LSNA+ F+ +G V++ + N +V + G I + + Sbjct: 684 YIKGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQVNQQVQITVTDTGKGIDPEFLPHI 743 Query: 739 FNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS--SDEGVT 782 F F H G G+GLGLSIV+ ++ HGG + S D+G T Sbjct: 744 FESFRQEDVSITRHYG---GLGLGLSIVKYLVDAHGGTIVADSLGEDKGAT 791 >gi|126440086|ref|YP_001058658.1| Signal transduction histidine kinase [Burkholderia pseudomallei 668] gi|126219579|gb|ABN83085.1| signal transduction histidine kinase [Burkholderia pseudomallei 668] Length = 644 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 17 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 69 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 70 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 129 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 130 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 189 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 190 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 248 Query: 783 TINCRI 788 T RI Sbjct: 249 TATARI 254 >gi|15893615|ref|NP_346964.1| sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15023168|gb|AAK78304.1|AE007547_1 Sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] Length = 654 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/356 (21%), Positives = 165/356 (46%), Gaps = 21/356 (5%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 ++ L +GV + D ++ N A R ++ +++ G I I C Sbjct: 279 VLEKLKDGVIIKNED-KVVFMNEAQRKMFGLTKDKTVEGIDINKIVHRCC---------- 327 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 + ++E+K + + L V + I T+ +V+D + +++ E+ Sbjct: 328 -----CKAQNNEKKIITAGGKELYLEVEAFGITINGERLTLDIVKDVSDEILVKKS-KEE 381 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616 E ++K D++K F ++++ELR+P+ I ++ + K ++Y++ + + Sbjct: 382 IEKVKKTDKLKGEFFTNITHELRTPINVIYSALQVMEMRIDKNNFDRRNLNKYMKVLKQN 441 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL ++++++D+ +D G +K S + L+ + SI +HE + + +D + Sbjct: 442 CYRLLRIISNLIDITKIDTGFLKPCVSNREIIGLIENITMSIVPYLHEKGMELVFDTDVE 501 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 D + +I +LSNA+ F + V++ + VK+NG IP++ K Sbjct: 502 EKYVQCDPDMVERIMLNLLSNAVKFRKEKGLVLVTIHDKGSRIVLKVKDNGIGIPKEKQK 561 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF ++ H +G G+GLS+V+S + ++GG +S+ S + TT P+ Sbjct: 562 MIFKRFKQINPLHVTPHQGSGIGLSLVKSIVEMNGGKISVESEENVGTTFIIEFPA 617 >gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 1079 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 131/243 (53%), Gaps = 15/243 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASS 617 E A+ K++F+ ++S+++R+P+ IIGFT L L +++ + Y+ ASS Sbjct: 560 EKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL----ALSNIDDTDRVKDYLGKTLASS 615 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK 676 LL+L+ND+LD++ +++G + L + L+D+L+++K ++ +++ + + + + D Sbjct: 616 NHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDAMDVT 675 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSI 730 D+ RL QI +LSNA+ F+ G TV ++ R G + F +K+NG + Sbjct: 676 DEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQYEFRIKDNGIGM 735 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++ + +F F + +G GLG++I ++ +++ GG + + ++ T + Sbjct: 736 SQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTIEVQTAQGKGTEFTVCV 795 Query: 789 PSK 791 P + Sbjct: 796 PMR 798 >gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901] gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901] Length = 663 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K F+ +S+ELR+PLT I+G+TDLL T S + +Y++ +S + LL L+ Sbjct: 145 ASRAKTEFLTRLSHELRTPLTAILGYTDLLSTR---SKDEADQEYLQIVSHNGKHLLALL 201 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683 ND+LDL+ ++AG +++ S + +++ K + + +V G+L F D Sbjct: 202 NDVLDLSKIEAGKLEIEKSFFEIQPFFSDIYLLFNMKAKDKGLDFEVRLTGELRPVFYGD 261 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 RL QI ++ NA+ F+S+GS + I++ + V + G I + + Sbjct: 262 ATRLRQIVLNLIGNAIKFTSQGSVIVEVSSIVENVGEEQQLRICVHDTGPGISSEQLDDI 321 Query: 739 FNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F F A + + G GLGL+I ++ GG +++ S+ + C +P Sbjct: 322 FLPFNQAASKSEASENGTGLGLTISRELVSRMGGQLTVESTLGVGSCFCCTLP 374 >gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 755 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +R + EK+ A A K+ F+ +S+E+R+P+ +IG T LL ++ L +Q +Y Sbjct: 217 RGDRIIQEKHAAAAAAARAKDDFLAMMSHEIRTPMNGVIGMTGLLLDTE---LTPQQQEY 273 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S LL L+NDILD + ++AG + L + + + + +A+++ I + Sbjct: 274 TETIRKSGDSLLTLINDILDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIEL 333 Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFS 722 V+ + + D RL QI +L NA+ F+ G V+ +A + F+ Sbjct: 334 AGVVEPDVPQAILGDVTRLRQILVNLLGNAIKFTQSGEVVVNVSAEPFAADTPLYELSFA 393 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G IP + +F F R+ G GLGL I + L GG + + S + Sbjct: 394 VRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQ 453 Query: 781 VTTINCRIPSKE 792 +T I ++E Sbjct: 454 GSTFAFTIQAEE 465 >gi|332707689|ref|ZP_08427717.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332353598|gb|EGJ33110.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 656 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 64/307 (20%) Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--K 595 +LT V ++T++ A+ L + EA +A+ K++F+ +S+ELR+PL I+G + LL Sbjct: 342 VLTIVRDITENKLAQIELQQAKEAAEEANHAKSAFMASMSHELRTPLNGILGLSQLLWED 401 Query: 596 TSKLGSLNSKQSQYVEYISA------SSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 +LG Y E++S S T LL L++D+LD++ ++AG M L + + Sbjct: 402 AEELG--------YDEFVSDLKEIWNSGTHLLTLISDVLDISKIEAGKMNLYLESFDVTT 453 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L+ E++ M + N +K+ S LG+ VADR +L Q+ +LSNA F+ G T+ Sbjct: 454 LIVELESLAKPLMQKKNNSLKISSADSLGTMVADRTKLKQVLLNLLSNAAKFTETG-TIT 512 Query: 710 LKAARD-----NGD---------------------------------------FIFSVKN 725 R+ NG IFSV + Sbjct: 513 FSIKREGSNHSNGKNELILELSQPYSRSSSASYTTIDIPTSSNTLANLESDHWLIFSVAD 572 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G + + VF F N+ + G GLGLSI + F + G +++ S +T Sbjct: 573 TGIGMTPEQLNKVFQPFTQADNSTTKKYGGTGLGLSISQRFCQMMGCQITVESQIGVGST 632 Query: 784 INCRIPS 790 + R P+ Sbjct: 633 FSIRCPA 639 >gi|302551344|ref|ZP_07303686.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302468962|gb|EFL32055.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1359 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 13/253 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ L EK L + + K+ F+ ++S+ELR+PL +++ LL + G L+ ++ Q+ Sbjct: 919 RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQF 978 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S + LL L+NDILDL+ ++AG M + + L LL+ V + + + Sbjct: 979 ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAF 1038 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDF 719 +V + + +D QRL QI +LSNA+ F++ G + + RD D Sbjct: 1039 EVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTATGKVELRVDRVRDTEHRFVRDADDV 1098 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I FSV + G I + +F F R+ G GLGLSI L GG + S Sbjct: 1099 IAFSVSDTGIGIAPEKLPVIFEAFAQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAES 1158 Query: 777 SDEGVTTINCRIP 789 +T +P Sbjct: 1159 EPGKGSTFTLHVP 1171 >gi|296111123|ref|YP_003621504.1| two-component sensor histidine kinase [Leuconostoc kimchii IMSNU 11154] gi|295832654|gb|ADG40535.1| two-component sensor histidine kinase [Leuconostoc kimchii IMSNU 11154] Length = 361 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 138/274 (50%), Gaps = 10/274 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYEL 580 SD ++++ P Q + +NV++ + + R + E+ R+++ K+ + ++S++L Sbjct: 94 SDGIIDWRADYAPKTQAL---INVSNQIAKNTRQIREEE---RQSERSKDEMITNISHDL 147 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT IIG+ L++ + +++++Y+ S + LV D+ + A L Sbjct: 148 RTPLTAIIGYLGLVEMNADVLSPAERAKYIHTAYDKSNQMKVLVEDLFAFSQTQAHDAVL 207 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 N +T+ L DL ++ S + E I + I++ + AD +L ++ +++NAM Sbjct: 208 NMTTLSLGDLFAQLLASYEIEAQEKKIELTQITNPETIMLEADSDKLARVLMNLITNAMK 267 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + + V L A + V N+G+ IP +F RF V ++ + G GLGL Sbjct: 268 YGEGATFVKLTAQVKDKTVEIRVVNDGAKIPSKDIVDIFGRFYRVESSRNSKTGGTGLGL 327 Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +IV+ I H G V ++SD+ +T+ +P K+ Sbjct: 328 AIVKGIIEQHQGSV-FATSDDDLTSFIVTMPLKQ 360 >gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 513 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 270 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 329 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S L+ L++DILDL+ +++ +K +S LN L+ ++++ A K + I IK Sbjct: 330 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKS 388 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNG 727 + + D RL Q+ ++NA F+ KG + DN + IF V++ G Sbjct: 389 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGY-IHFGHTLDNRNADSVQIF-VEDTG 446 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S IP++ +F+RF Q G GLGLSI ++ + G +S+ S Sbjct: 447 SGIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVKS 493 >gi|218694528|ref|YP_002402195.1| hybrid sensory histidine kinase TorS [Escherichia coli 55989] gi|218351260|emb|CAU96964.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli 55989] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--TLNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|206971505|ref|ZP_03232455.1| sensor histidine kinase [Bacillus cereus AH1134] gi|206733490|gb|EDZ50662.1| sensor histidine kinase [Bacillus cereus AH1134] Length = 385 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQETNIECRPSFPSQKLMVLA 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 274 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384 >gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 586 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 7/234 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTIL 620 +RK + +K+ F +VS+ELR+PLT I GF + L++ + SL+ K + + I + L Sbjct: 356 IRKLEALKSEFAANVSHELRTPLTLISGFVETLQSWE--SLDEKDRKMALNIIELETERL 413 Query: 621 LNLVNDILDLATVDAGIMKL-NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+NDIL L+ ++ I +L Y + + L+NEV+ ++ + NI++K + + + Sbjct: 414 KRLINDILRLSEIE-NIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVHT 472 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + Q+ ++ NA+ ++ G + + A + + V +NG IP++ C+ +F Sbjct: 473 LFGNSDWFKQMLVNLIENAIKYTPTGGQIKVSAKNEQNEISIMVMDNGIGIPKEDCERIF 532 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF V A G GLGL+IV+ + GG + +SS + R+PSK Sbjct: 533 ERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLPSK 586 >gi|194467517|ref|ZP_03073504.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] gi|194454553|gb|EDX43450.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri 100-23] Length = 381 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 139/263 (52%), Gaps = 15/263 (5%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q ++T VN + DS A R++ ++ RK ++ K+ + +VS++LR+PLT+IIG+ L Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S +Y + + LV+D+ + V +N I LN L+ + Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233 Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S + I I VI + + AD ++L ++F+ ++SNA + + S + + Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769 A ++N + V N+G+ IPE +F RF + A R + G GLGL+IV+S ++LH Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G+V + +S+E T +P K+ Sbjct: 352 GNVKV-TSNEDETAFIVTLPLKQ 373 >gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] Length = 646 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 172/388 (44%), Gaps = 46/388 (11%) Query: 417 ENLTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473 EN V+ DL Y + + +I+ + +G A F D R+ +N A+ +++ E Sbjct: 59 ENQRVKSDLNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEA- 117 Query: 474 LSPGTH------------IRNIAATCSRYYNES--DGWDLFAA---IITSFDDERKSLQG 516 + PG + NI A + E D W FA +I ++ Sbjct: 118 VKPGVSYIEILQFITEEGVVNIGALKPHEWREKMLDRWQSFAPEPEVIRLWNGH------ 171 Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 ++L+ ++ L +N+TD++R E+ LTE A+ K+SF+ ++ Sbjct: 172 YIKLIDQRGHGGDMVSLA--------LNITDTIRHEKELTEARRRAEAANRAKSSFLANM 223 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+P+ ++G +LL + L +Q + I S LL ++ND+LD + ++A Sbjct: 224 SHEIRTPMNGVVGMAELLMET---DLTEEQRLFASTIKTSGEALLVIINDVLDYSKIEAE 280 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695 + L+ L ++E+ + + + + V D L + FV D R+ QI + +L Sbjct: 281 KLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRFVGDPGRIRQIMTNLL 340 Query: 696 SNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748 NA+ F+ G T + A +V++ G IP D +F F V + Sbjct: 341 GNAVKFTESGHVLVRVTGVHPDAEGRASVHVTVEDTGIGIPPDKIDHIFGEFNQVDDERN 400 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776 + G GLGL+I + I L GG + + S Sbjct: 401 RKFEGTGLGLAISQKLIRLMGGKIWVDS 428 >gi|331676785|ref|ZP_08377481.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] gi|331075474|gb|EGI46772.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 672 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 12/225 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 A +A +K F+ ++S+ELR+PLT ++GF L++ L+++ YV+ ++++ Sbjct: 293 QAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQP--ELSAETRAYVQRVTSAGK 350 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L +NDILD + ++AG + + + + +L E A + E + +++ L Sbjct: 351 ALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADLSDLP 410 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDM 734 + AD RL Q+ ++ NA+ F+ G + L A D+ +F V + G + D Sbjct: 411 LLIEADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADH--IVFEVSDTGPGMSADQ 468 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 K +F RF S G R G GLGL+I + + GG + + S Sbjct: 469 SKRLFQRF-SQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDS 512 >gi|254161106|ref|YP_003044214.1| hybrid sensory histidine kinase TorS [Escherichia coli B str. REL606] gi|242376807|emb|CAQ31520.1| TorS monomer, subunit of TorS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253973007|gb|ACT38678.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli B str. REL606] gi|253977221|gb|ACT42891.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BL21(DE3)] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|218688881|ref|YP_002397093.1| hybrid sensory histidine kinase TorS [Escherichia coli ED1a] gi|218426445|emb|CAR07271.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli ED1a] Length = 910 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1326 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 163/364 (44%), Gaps = 51/364 (14%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 + EG+A G I NPA + ++ + G H+ + + +Y SDG Sbjct: 455 VDEGIAGMDAKGYITFINPAGADMLGYDQAGIV-GAHLHS-----TIHYAHSDGSPY--- 505 Query: 503 IITSFDD---ERKSLQGTLELLSDSVL----------EYSIIPL----PNAQTMLTFVNV 545 S DD R ++ G + D VL EY+ P+ T++ F ++ Sbjct: 506 ---SRDDCPMYRTAITGEACAVDDEVLWRKDGGAFPAEYAATPVLKDGRAVGTVVAFRDI 562 Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNS 604 T+ + E L EA A K+ F+ ++S+E+R+P+ IIG + L LKT +L+ Sbjct: 563 TERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKT----NLSP 618 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI------VLNDLLNEVKQSI 658 +Q Y+ I SS LL ++NDILD + ++AG KLN +I VL L N + + Sbjct: 619 QQRDYLNKIQISSHHLLGVINDILDFSKIEAG--KLNVESIDFSLEKVLETLANLIGEKA 676 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + K E I IS + + D RL QI + SNA+ F+ G VI ++ D Sbjct: 677 SAKGLE---LIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEHGEIVIGAKVQERTD 733 Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F+V++ G + + +F F R+ G GLGL+I + L G V Sbjct: 734 DEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAISKQLSALMHGEV 793 Query: 773 SISS 776 + S Sbjct: 794 GVES 797 >gi|86356048|ref|YP_467940.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86280150|gb|ABC89213.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 760 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 10/256 (3%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +V V ER + + E+ R+ E K+ + VS+E+R+PL+ I+G T LL Sbjct: 211 LLLQSVARDVTEERLIAQSRESARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMTHLLA 270 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++L +Q Y+ I S L LV D+LD +T++ G +L+ + L LL V Sbjct: 271 ETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLLESVV 327 Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + +A + HE I I +S + D RL Q+ ++ NA+ F+ G V ++ + Sbjct: 328 EMLAHRAHEKGIEIGATVSSDVPENMSFDAARLRQVLFNVIGNAVKFTQAGG-VFIRVSL 386 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773 + G+ + +V + G + + VF F + + G GLGL+I + G ++ Sbjct: 387 NAGNLLITVTDTGPGMTAEEQARVFGEFEQGGNVADKSGGTGLGLAISARIMREFAGALT 446 Query: 774 ISSSDEGVTTINCRIP 789 ++S +T R P Sbjct: 447 VTSQKGKGSTFTIRFP 462 >gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 596 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/366 (22%), Positives = 162/366 (44%), Gaps = 37/366 (10%) Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 K Q E I H+++G+ RI NPA + +++ +E + A R Sbjct: 250 KSQAEAILTHMADGLMALNRARRIIRLNPAAQRMFQIQE-----------LQALGRRPGE 298 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTD 547 ++G L A+ ++D R S L D VL+ I PL + T++ F ++T+ Sbjct: 299 LAEGSGLEEALEEAWD--RNSALTRQIRLKDRVLQAYITPLTGEGRHSGGTVVVFHDITE 356 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L + + ++ FV +VS+EL++PLT + + + L + Sbjct: 357 --------------LERLESMRREFVANVSHELKTPLTTVKSYVETLLDGAADDPEVR-D 401 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +++ + + + LV D+L L +D G ++ N + +L+ E + + + Sbjct: 402 RFLRVVDGETERMARLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRL 461 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 + D + + D ++ Q+ +L+NA++F+ G + + A + D + ++ + Sbjct: 462 TVLCEVDPETPPALCDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADT 521 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP +F RF V A G GLGLSI + + L GG ++I+S + TT+ Sbjct: 522 GIGIPAQDLPRIFERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTV 581 Query: 785 NCRIPS 790 +P+ Sbjct: 582 TFTLPA 587 >gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 1349 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 21/244 (8%) Query: 553 RALTEKNEAL--------RKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +AL EKN+ + +KA+++ K+ F+ ++S+ELR+PL +I+ + LL + Sbjct: 643 QALEEKNQMILERNLEIQKKAEDLALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENN 702 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G+L Q +Y + I S LL L+++ILDL+ ++AG M L+Y + L +++N+++ Sbjct: 703 EGNLLEDQIEYAKVIQTSGNGLLTLIDEILDLSKIEAGKMTLSYEDVSLAEMINDLQNLF 762 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD 715 + + +K D S + D RL QI ++SNA+ F++KGS + Sbjct: 763 GPMAVDKGLELKFDCDKTTFSKIQTDNLRLQQILRNLISNALKFTAKGSVTLSVYPNKEK 822 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 G F+V++ G IP++ + VF F A RR G GLGLSI + L GG + Sbjct: 823 EGYLNFAVRDTGIGIPKEKHQLVFEAF-QQADGSTRRKFGGTGLGLSISKELAKLLGGSL 881 Query: 773 SISS 776 I+S Sbjct: 882 YINS 885 >gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 464 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G+ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G M+LN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMRLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELSTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + I LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460 >gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 477 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 162/363 (44%), Gaps = 25/363 (6%) Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492 K + ETI + + EGV F GRI L N A + + + R +R + + Sbjct: 135 KTKFETILESMIEGVVGFDHMGRILLMNSAAEQMLRVQSER------VRGKLLLEAFRHR 188 Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRA 551 E +G L + + ++K +Q L ++P+ + + +L V D V Sbjct: 189 ELEG--LLTQALNTGKAQKKQMQ--LWPNKPQTFRVQVVPVWTDQRRLLGAAMVIDDV-- 242 Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 TE +R+ ++++ FV +VS+ELR+PLT+I GF + L L + +++ Sbjct: 243 ----TE----VRRLEQMRTEFVANVSHELRTPLTSIKGFVETLLDGALDDTKVAR-RFLS 293 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + L L+ D+L L+ +++ + ++ L + V+ + + I ++V Sbjct: 294 IINEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQV 353 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + L L Q+ + NA+ ++ +G V ++A R I V++ G IP Sbjct: 354 DVETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATRGCDSVILEVQDTGIGIP 413 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ +F RF V A + G GLGL+IV+ I GG V++ S +T P Sbjct: 414 EESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFP 473 Query: 790 SKE 792 E Sbjct: 474 VAE 476 >gi|161984909|ref|YP_408631.2| hybrid sensory histidine kinase TorS [Shigella boydii Sb227] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|161486256|ref|NP_753053.2| hybrid sensory histidine kinase TorS [Escherichia coli CFT073] gi|306812567|ref|ZP_07446760.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101] gi|222032709|emb|CAP75448.1| Sensor protein torS [Escherichia coli LF82] gi|305853330|gb|EFM53769.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101] gi|307552818|gb|ADN45593.1| sensor histidine kinase/response regulator TorS [Escherichia coli ABU 83972] gi|312945500|gb|ADR26327.1| hybrid sensory histidine kinase TorS [Escherichia coli O83:H1 str. NRG 857C] Length = 910 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 618 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 15/262 (5%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GF 590 P+ + + F + T +R E + LR+A + + VS++LR+PL I+ G Sbjct: 362 PVTDGGVAVFFRDATRRMRDE-------QRLRQAQAFEQQLIGIVSHDLRNPLNAILLGA 414 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLND 649 + LL L N + I +++ L+ D+LDL G + + L Sbjct: 415 SSLLAREDLSDRNVAS---IARIRSAAERAARLIRDLLDLTRARLGGGIPVQPRPADLRQ 471 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + +V + + I ++ D G + D R+ Q+ +++NA+ + ++G+ V Sbjct: 472 VAQQVVDELEPSYPDRPISVEAAGDTH-GQW--DPDRIAQVIGNLVTNALKYGARGTPVA 528 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ A ++G+ SV N G+ IP + +++F A R VGLGL IVE + HG Sbjct: 529 VRIAAEDGEVRLSVHNQGTPIPAETVRTIFEAGGRAAPDPTGRSVGLGLFIVERIADAHG 588 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G V + SS+E TT +P K Sbjct: 589 GRVEVHSSEEDGTTFTVWLPRK 610 >gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1022 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 9/254 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T + E AL + E +A+ K+ F+ ++S+ELR+PLT IIG+ DL+ S Sbjct: 479 NITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTTIIGYADLITISVHSGEF 538 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + + + + + LL ++ND+LDL+ ++AG M+++ + L EV S+ Sbjct: 539 DQVASDIARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERFSVRALAEEVIASMRVFAQ 598 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718 + N + + D + +D R+ QI ++ NA F+ G+ V L AR D Sbjct: 599 KRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFTEDGA-VTLDIARTVSDHDHAA 657 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 +F++ + G + D +F F R+ G GLGL++ +L GG ++++ Sbjct: 658 LLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLGLALCRRLTHLLGGKITVT 717 Query: 776 SSDEGVTTINCRIP 789 S TT +P Sbjct: 718 SQPGVGTTFVVTLP 731 >gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ] gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ] Length = 470 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 A L EK E K K+ F+ +VS+ELR+PL +IIGF+++++ LG L N++ +Y Sbjct: 217 ANLELQEKKENAEKESVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEY 276 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ + LL+L+NDILD + +A + + L +++ + K E + + Sbjct: 277 IKEINHAGVHLLSLINDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVEL 336 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 K + D +R+ Q+ IL+N+M F+ + V L + + + + +NG Sbjct: 337 KRDMPESQIVLMVDARRMKQVILNILTNSMKFTPEKGFVRLSVEKKQEEVVIEICDNGIG 396 Query: 730 IP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I +D+ K SVF + + H + G GLGL + + + L G SI T + Sbjct: 397 IAQQDLYKVMSVFGQ-ADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTL 455 Query: 787 RIPSKE 792 P E Sbjct: 456 SFPCVE 461 >gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 792 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 137/253 (54%), Gaps = 16/253 (6%) Query: 552 ERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 ER + EK+ +A++ K+ F+ ++S+ELR+PL IIG++++L+ + + ++ Sbjct: 257 ERKVVEKDLIATRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQEV-VAEDDYER 315 Query: 607 SQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ I ++ LL+L+NDILD++ ++AG M+++ + DL++EV ++ Sbjct: 316 EEILDDIGKVRSAGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEVAGALRLLAD 375 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD--F 719 E ++ V G +G +D ++ QI +LSNA+ F+ G V L R++ G+ Sbjct: 376 ERRNKLVVRGAGDVGVVHSDLVKVRQILFNLLSNAVKFTEDG-VVELICERESVAGEDWM 434 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + V++ G I + K +F F RR G GLGL+I S+ + GG +++SS Sbjct: 435 LCKVRDTGIGISDRAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATMLGGEITVSSK 494 Query: 778 DEGVTTINCRIPS 790 + + R+P+ Sbjct: 495 EGEGSEFCIRLPT 507 >gi|89107844|ref|AP_001624.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. W3110] gi|90111200|ref|NP_415513.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157160513|ref|YP_001457831.1| hybrid sensory histidine kinase TorS [Escherichia coli HS] gi|170080652|ref|YP_001729972.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188493988|ref|ZP_03001258.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238900253|ref|YP_002926049.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|331641526|ref|ZP_08342661.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] gi|17380324|sp|P39453|TORS_ECOLI RecName: Full=Sensor protein torS gi|85674812|dbj|BAA36135.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K12 substr. W3110] gi|87081816|gb|AAC74078.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157066193|gb|ABV05448.1| sensor histidine kinase/response regulator TorS [Escherichia coli HS] gi|169888487|gb|ACB02194.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188489187|gb|EDU64290.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238861441|gb|ACR63439.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|309701271|emb|CBJ00571.1| Two-component sensor kinase and response regulator [Escherichia coli ETEC H10407] gi|323938097|gb|EGB34359.1| TMAO reductase sytem sensor TorS [Escherichia coli E1520] gi|323942907|gb|EGB39072.1| TMAO reductase sytem sensor TorS [Escherichia coli E482] gi|323962878|gb|EGB58453.1| TMAO reductase sytem sensor TorS [Escherichia coli H489] gi|323973132|gb|EGB68324.1| TMAO reductase sytem sensor TorS [Escherichia coli TA007] gi|331038324|gb|EGI10544.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 582 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L++ + K F+ VS+ELR+PLT II F ++L K +S + Q + I Sbjct: 335 LEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFE-DSSEEQILCEIK 393 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +LL+++N+ILDLA ++ G L+ T+ L D++N V+ I N+I + + Sbjct: 394 ENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVE 453 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPE 732 + D +++ +I + NA+ F+ G V ++A A D +V+++G I + Sbjct: 454 RGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISK 513 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 + +F +F V ++ Q G GLGL++ + LHGG +S+ S ++G T I Sbjct: 514 ENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFI 568 >gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 907 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%) Query: 541 TFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +F + V A A + E + A++ K+ F+ ++S+ELR+PL I+G+ +LK Sbjct: 420 SFETLEQRVEARTAEIAEAKDKAEVANQAKSEFLSNMSHELRTPLNGILGYAQILKREH- 478 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +L+ +Q+ +E I S LL L+NDILDL+ ++A M+L I + L+ V I Sbjct: 479 -NLSFRQTDGLEIIHKSGIHLLTLINDILDLSKIEARKMELYPDDIHFANFLDSVVGVIK 537 Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715 + E +I K ++ L +AD +RL Q+ +L NA+ F+ +G + +K + Sbjct: 538 MRALEKDILFKYQTESNLPIGIIADEKRLRQVLLNLLGNAIKFTEQGQVTLGVRVKEYQV 597 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 N I F + + G + +F F QRR G GLGL+I + + L GG + Sbjct: 598 NTSTICFDIIDTGVGMNPQQLHKIFLPF-EQVGDTQRRSEGTGLGLAITKQLVELMGGEL 656 Query: 773 SISS 776 ++S Sbjct: 657 KVTS 660 >gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 731 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 123/240 (51%), Gaps = 19/240 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ TE + A++ K F+ ++S+++R+P+ IIG T L++ +K +Y Sbjct: 307 KAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 364 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I SS LL ++ND+LD++ ++AG YS + DL+ E+ ++++E + Sbjct: 365 ADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQQTL 424 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722 +I + +V D+ L+QIFS +LSNA+ ++ +G + + + F Sbjct: 425 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFL 484 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISS 776 V +NG + D ++F+ F R +R +G GLG++I ++ + GG + + S Sbjct: 485 VSDNGMGMSADFKDTIFDAFT----RAERSLTNKIQGTGLGMAITKNLVEAMGGTIDVDS 540 >gi|256841371|ref|ZP_05546878.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737214|gb|EEU50541.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 638 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 129/248 (52%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721 E I K +D++RL Q IL NA+ F+S G I + + D D Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSADAQDVRL 571 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628 Query: 781 VTTINCRI 788 CRI Sbjct: 629 ----GCRI 632 >gi|251781094|ref|ZP_04824014.1| two-component sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085409|gb|EES51299.1| two-component sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 459 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 27/308 (8%) Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535 P T++ +A N+ D + +DE +L TL LS + L N Sbjct: 161 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 205 Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 A +TD + + L E E RK + ++ FV +VS+EL++P+ I G+ + LK Sbjct: 206 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 257 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + Y+E I + S + LV ++L+L+ +++G +K + +N L++++ Sbjct: 258 DGIVSG--DDALAYLETIISESQKMNILVKNMLELSKLESGTIKPKLESFNINRLISKIL 315 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++ K EN++++ S AD ++ Q+ + I++NA+ ++ + + + + Sbjct: 316 KNNHLKFEENHLKVNFNSSNPYSYVYADTFQMDQVITNIITNAIKYTPSHNLIDVSVNEE 375 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 N F S+KN G +IPE +F++F V + + + GLGLSIV++ + LH + Sbjct: 376 NDKFKISIKNMGINIPESEINKLFDKFYRVDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 435 Query: 774 ISSSDEGV 781 + + D GV Sbjct: 436 LKNIDNGV 443 >gi|207722544|ref|YP_002252980.1| sensor histidine kinase transmembrane (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] gi|206587726|emb|CAQ18308.1| probable sensor histidine kinase transmembrane (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] Length = 869 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 10/243 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N+ +L V++ + E L E + +A+ K+ F+ V +E+R+PL +G+ +LL Sbjct: 466 NSAVLLGLVDMNERKANEILLMEAKQTADEANRAKSMFLAIVGHEIRTPLHGAMGYLELL 525 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 S SL+ +Q ++V+ S S LL LVND+LD ++A ++++ + N++L Sbjct: 526 ARS---SLSLEQREWVDLTSRSFDALLTLVNDLLDSTKLEANALQISPVPMCPNEVLERC 582 Query: 655 KQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +S + + + I+D D QRL QI +LSNA F+ +G+ I Sbjct: 583 ARSFGAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITIASRC 642 Query: 714 --RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 R++G F V + G IP M ++FN RR G GLGL + + +L Sbjct: 643 LKREDGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHL 702 Query: 768 HGG 770 GG Sbjct: 703 MGG 705 >gi|168701006|ref|ZP_02733283.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 741 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E+ L++ D K+ F+ +++ELR+PL + +L+ ++ +K+++ E + Sbjct: 364 VAERAARLKEQDRRKDEFLALLAHELRNPLAPLRNGLQVLRLTEGRGDAAKRAR--EMME 421 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 T + L++D+LD++ + + L + + L +++ ++ + E V Sbjct: 422 RQLTHTVRLIDDLLDVSRISRNKLNLRRTRVSLAEVVESAAETARPLIEEARHEFTVELP 481 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + AD RL Q+FS +L+N+ ++ G + L+A R +G + +V++NG IP D Sbjct: 482 PEPVFLDADLTRLAQVFSNLLTNSAKYTPPGGRIALRAERRDGALVVTVRDNGLGIPPDY 541 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 +F+ F S A R R G+G+GL++V+ + +HGG+V+ +S Sbjct: 542 LPRIFDMF-SQADRVVERASGGLGIGLALVKGLVEMHGGNVAAAS 585 >gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 850 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 17/247 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVE 611 R L E A K+ F+ ++S+E+R+PL I+G TDLL G LN ++Q QY+ Sbjct: 198 RDLAAAREQAESASRAKSDFLANMSHEIRTPLNGIMGMTDLLLG---GGLNQTQQHQYLG 254 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ L+ ++ DILD + ++AG ++L+ L + + +S++ + E +++ Sbjct: 255 AIKGSADCLMGVIGDILDFSKIEAGKVELDPVPFSLRTFVGQAVRSLSARAAEKG--VEL 312 Query: 672 ISDGK---LGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI---FSVK 724 + D + + + D +L Q+ ++ NA+ FS G V ++ A G+ + FSV Sbjct: 313 VCDPREDVIDPLIGDCGKLRQVLVNLVGNAIKFSDGGEVVVAVETAAVEGNEVLLRFSVS 372 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGV 781 + G I + +FN F +R G GLGL+I + L GG + + S+ EG Sbjct: 373 DQGCGIAPEALDRIFNVFEQADSSTTKRFGGTGLGLAISRRIVQLMGGDIRVESAPGEGS 432 Query: 782 T-TINCR 787 T CR Sbjct: 433 TFYFTCR 439 >gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 32953] gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two component regulatory system, activates OmpR [Yersinia pseudotuberculosis IP 32953] Length = 942 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|323379162|gb|ADX51430.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR] Length = 2322 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL+ EA RK A + K+ F+ +VS++LR+P+ +IG ++LL Sbjct: 1774 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1833 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ +Q YVE I + LL L+NDILD + ++AG MK++ + L + + EV Sbjct: 1834 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1890 Query: 655 KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ + ++ DG + + D RL QIF +LSN+ F+ KGS + Sbjct: 1891 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1950 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A D D V + G I + +F F S A R G GLGLSI ++ I Sbjct: 1951 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2009 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2010 EDVLGGKIWL-QSEEGVGT 2027 >gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 735 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 16/304 (5%) Query: 499 LFAAIITSFDDERKSLQGTLELLS----------DSVLEYSIIPLPNAQTMLTFVNVTDS 548 A S D+R SL L LS LE +P A T TF ++TD Sbjct: 292 FIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTS-TFRDMTDR 350 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E +L A K++F+ ++++ELR+PLT++IGF + ++ +L+ Sbjct: 351 HSLEESLIAARVRAEAAVRAKSAFLANMTHELRTPLTSVIGFAEQIQAEP--ALSPTVRH 408 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + ISA LL+ +NDILD + +++G + + + +N L+ E ++ + + Sbjct: 409 ASDRISAGGRALLSTINDILDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLS 468 Query: 669 IKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + LG A D Q + Q+ ++ NA+ F+ +G + D+G +V + G Sbjct: 469 LSYDGSAVLGLCAALDSQHVRQVLLNLIGNAIKFTEQGGVTVTAQRNDDGMLEIAVADTG 528 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I ED + +F RF RR G GLGL+I GG + +SS+ +T Sbjct: 529 IGIAEDHLERLFGRFSQVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFT 588 Query: 786 CRIP 789 +P Sbjct: 589 LTLP 592 >gi|110641175|ref|YP_668905.1| hybrid sensory histidine kinase TorS [Escherichia coli 536] gi|110342767|gb|ABG69004.1| sensor protein TorS [Escherichia coli 536] Length = 910 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1131 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ + + Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 785 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A E Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 842 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 901 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I D VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959 >gi|332519303|ref|ZP_08395770.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332045151|gb|EGI81344.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1477 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 28/265 (10%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T E + +A A+ KN F+ ++S+E+R+P+ ++GF++LLK L Sbjct: 1086 DITKQKLIEEEIINAKKAAESANLHKNYFLANMSHEIRTPMNGVLGFSELLKKDSLSK-- 1143 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK----QSIA 659 + + +Y+E I ++S LLNL++DI+D+A +++ +K+NY+ + L+ ++ Q Sbjct: 1144 TDRLKYLEIIDSNSKQLLNLIDDIIDIAKIESNELKINYTECNVPKLIQNLQITYNQLKI 1203 Query: 660 TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAA 713 K+ +N I + K + D QRL Q+ S +L+N++ FS KG+ TVI Sbjct: 1204 VKLKKNITFTTYIPENYKDLQIITDEQRLQQVISNLLNNSLKFSEKGNISFGFTVI---- 1259 Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINL 767 G F+ F VK+ G I ++ +F RF SNA G G GLGLSI + + L Sbjct: 1260 ---GKFLKFFVKDQGIGINKNKQLEIFERFKQLNYKSNAKYG---GTGLGLSISKGIVTL 1313 Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792 GG ++++S + + IP KE Sbjct: 1314 LGGDITVTSQENKGSMFEFTIPLKE 1338 >gi|324117144|gb|EGC11052.1| TMAO reductase sytem sensor TorS [Escherichia coli E1167] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 525 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 129/254 (50%), Gaps = 7/254 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKL 599 ++T+ +RAE + ++NE L + +++ F ++S+EL++PL I LL+ S+ Sbjct: 242 DITERLRAEEKIKKQNEELEYS-KLRTQFFANISHELKTPLNLIFSSLQLLEFYLYNSQT 300 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 K + Y++ I + LL LVN+++D+ ++ L+ + L+ E+ +++ Sbjct: 301 YKDKDKINNYLKSIKNNGFRLLRLVNNLIDITRIEVDAFSLHRGNFDIVKLIREIVNTVS 360 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + E K I D D + ++ ++SNA+ FS++G +IL + + Sbjct: 361 DYLEEKERDFKFICDLDSAVIACDPFNIERVILNLISNAVKFSARGDQIILTLQKVDEAI 420 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 SVK+ G I ++ +F++F V + + +R G G+GLS+V+S I +HGG + + S Sbjct: 421 SLSVKDTGIGIEKENQAIIFDKFRQVDQSFKKKREGSGIGLSLVKSIIEMHGGKIELESD 480 Query: 778 DEGVTTINCRIPSK 791 + +P K Sbjct: 481 YGYYSNFKVFLPFK 494 >gi|295090460|emb|CBK76567.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum K10] Length = 373 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN+ V R L EK R+A+ KN + +V+++LR+PLT+IIG+ +LL + K Sbjct: 116 VNLNRMVEDIRRLMEKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKTELP 171 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y++ A + L L+ D+ ++ G + ++ + + LL ++ + Sbjct: 172 PEIQKKYIDIAYAKAKRLEKLIEDLFGFTKMNYGKLSMHVGKVDIVKLLGQLLEEFYPNF 231 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ ++ S+ AD L ++F +++NA+ + + G V+++ + S Sbjct: 232 VDRNLSYELHSNVPAKMIDADGNLLARLFDNLINNAIKYGADGKRVLVQIHAGDEVVSVS 291 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V N G IP D +FN+F V + G GLGL+I +S +++HGG + + S +G Sbjct: 292 VTNYGYVIPADELPLIFNKFYRVEQSRSTHTGGTGLGLAIAKSVVDMHGGTIQVKSDLDG 351 Query: 781 -VTTINCRI 788 V T+ ++ Sbjct: 352 TVFTVKLKV 360 >gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 878 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 22/252 (8%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+ Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 411 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661 Q + V+ I SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 412 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 468 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713 + + + D + + V D R+ QI + ++SNA+ F+ +G ++ L+ Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILVDVSYEEALEQG 528 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R G F +K++G I D ++F F R+ G GLGL+I +++ GG Sbjct: 529 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 586 Query: 772 VSISSSDEGVTT 783 + +++S +GV T Sbjct: 587 L-VATSTKGVGT 597 >gi|253996821|ref|YP_003048885.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis JLW8] gi|253983500|gb|ACT48358.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis JLW8] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 10/264 (3%) Query: 515 QGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEAL--RKADEI 568 +G L +L D+ L I LP + +L + ++ ER + EAL +++ + Sbjct: 624 RGVLVILPDTNLSKGNRTIFLPEQRQLLDTFSSQIAIAIERVHYVEVAQEALISMESERL 683 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 +NS + +S++L +PLT II LK +N K+ +YV ++ S + NLV ++L Sbjct: 684 RNSVLSAISHDLNTPLTTIIAAAGWLKQET--EINDKRYEYVSMLNEQSIRMKNLVVNLL 741 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D+A + +G +KLN +L +++ ++++ + ++ I I + D L F D + Sbjct: 742 DMARLQSGKVKLNKQWQLLEEVVGTSLRTMSEVVSKHTIVIDMPHDLPLIEF--DAVLID 799 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 ++ +L NA +S G+ + + A D SV + GS +PE++ +F +F Sbjct: 800 RVLCNLLDNASKYSPAGNRIFISARTQQNDVWISVADEGSGLPENLENQLFEKFTRGEKE 859 Query: 749 GQRRGVGLGLSIVESFINLHGGHV 772 + GVGLGLSI ++ I H G + Sbjct: 860 SSKAGVGLGLSICKAIIEAHDGKI 883 >gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 417 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R + ++ FV +VS+ELR+PLT+I G+ + L L + + +++ I S + Sbjct: 181 RNLELMRREFVSNVSHELRTPLTSIHGYAETLLEYDLSDEETVR-KFLRIIEGESARMTR 239 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 L+ND+LDL ++AG ++L + L+++ V + ++ E + + + D + G FV Sbjct: 240 LINDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEE--LGVSIYEDMERGVFVE 297 Query: 682 ADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL+Q+ ++ NA+ ++S V ++ N + V++ G IPE+ K Sbjct: 298 GDFDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRVYTANNYAVLEVEDTGIGIPEEARKH 357 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF V A + G GLGL+IV+ HGG VS+ S TT R+P K+ Sbjct: 358 IFERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLPLKK 414 >gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 974 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL ++N AL++ D++K+ F+ + S+ELR+PL IIG T+ L GSL+ Q + Sbjct: 301 QALEQQNAALQRLDQLKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLSPVQIANLAM 360 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIR 668 + +S L +L+NDILD A + ++L+ ++ + V + I K E N Sbjct: 361 VVSSGKRLNSLINDILDFAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNE 420 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 I G G D RL QI ++ NA+ F+ GS + + N + +V + G Sbjct: 421 IPADFPGIDG----DENRLQQIMYNLVGNAIKFTESGSITVSATQQQNMAEV-TVADTGI 475 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I D + +F F ++ + RG GLGLSI + I LHGG + + S Sbjct: 476 GISPDKFEDIFKSFEQLNASVSYPSRGTGLGLSITKQLIELHGGRIRVES 525 >gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] Length = 1297 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 118/221 (53%), Gaps = 17/221 (7%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ +S+E+R+P+ IIG T++ + K+ + ++ I ++S LL ++ND Sbjct: 921 QAKSDFLARMSHEIRTPMNGIIGMTEV--ALRPDQTEDKRIECLKKIDSASGYLLGILND 978 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGKLGSFVA 682 +LD++ +++G MKL + D++ + + KM+E +I I ++ D G Sbjct: 979 VLDMSKIESGKMKLVIDKCSIPDMMKNIDSIMDAKMNEKDITFVQNITLLHDWYYG---- 1034 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QI +LSNA+ +S+ G V L + D F+VK+NG IPE + Sbjct: 1035 DELRLNQILVNLLSNAVKYSNLGGHVDLTVKELPVDEKHSDIYFAVKDNGIGIPESKQQL 1094 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F RF ++ +++G GLGL+I +++ + ++S Sbjct: 1095 IFQRFEQADDSANARKQGTGLGLAISSRLVHMMDSDIKVAS 1135 >gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri ATCC BAA-895] gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895] Length = 778 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 30/242 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++ D GD Sbjct: 381 VLDPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDV 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 SS 777 S Sbjct: 491 SQ 492 >gi|22095653|sp|O48929|ETR1_TOBAC RecName: Full=Ethylene receptor; AltName: Full=NT-ETR1 gi|2655061|gb|AAB97160.1| ethylene receptor ETR1 homolog [Nicotiana tabacum] Length = 738 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+ E+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L +V I Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHVLFRKVLNLIK 429 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713 N ++ F + D +RL+QI ++ NA+ FS +GS I A Sbjct: 430 PIASVKNCLSRLTCLQICPEFAIGDEKRLMQILLNVVGNAVKFSKEGSVSISAVAAKSES 489 Query: 714 -------------RDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 +N ++ VK+ GS I P+D+ K +F +F N + G GL Sbjct: 490 LSDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDIPK-LFCKFAQNQALATKSSGGTGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 549 GLAISKRFVNLMEGHIWIESEGLG 572 >gi|324009916|gb|EGB79135.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 57-2] Length = 900 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 778 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L +Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTVEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|315296277|gb|EFU55583.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 16-3] Length = 900 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1400 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 17/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ L EK L A + K+ F+ ++S+ELR+PL +++ LL + G L+ ++ Q+ Sbjct: 912 RSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGRLSEQEEQF 971 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S + LL L+NDILDL+ ++AG M + + + LL+ V + + + Sbjct: 972 ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRAKKLPVVKLLDYVNATFRPLAVDRGLSF 1031 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718 ++ + + +D QRL QI +LSNA+ F+S G V L R G+ Sbjct: 1032 EITVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VKLHVERAPGEKFSEETLRSA 1090 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G IP + +F F + R+ G GLGLSI + GG + Sbjct: 1091 DAVVAFSVTDTGIGIPPEKLSVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRIV 1150 Query: 774 ISS 776 S Sbjct: 1151 AES 1153 >gi|228940322|ref|ZP_04102893.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973238|ref|ZP_04133827.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979801|ref|ZP_04140123.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407] gi|228779955|gb|EEM28200.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407] gi|228786434|gb|EEM34424.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819448|gb|EEM65502.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 448 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ + I S+ +NG + ++ +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGMEQEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G V + S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELP 447 >gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115] gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115] Length = 1644 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 17/250 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A AL EK L + K+ F+ ++S+ELR+PL +++ L+ + G+L +Q Y Sbjct: 929 ARHALEEKAAQLALTSKYKSEFLANMSHELRTPLNSLLLLAHQLRDNPDGNLTDQQQAYA 988 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I A+ LL+L+NDILDL+ +++G + + + + L + + V + A + + ++ Sbjct: 989 KTIYAAGNDLLSLINDILDLSKIESGTVSADLTEVPLRSVRDAVDTTFAHVASDKGVSLQ 1048 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA------------RDN 716 + L + + D +RLLQI +LSNA F+ KGS T+ ++ A R Sbjct: 1049 LNFSADLPPTLLTDEKRLLQILKNLLSNAFKFTEKGSVTLQVEPALSGWSTEHSTLRRAP 1108 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V + G I D + +F F R+ G GLGL+I + GG +++ Sbjct: 1109 SVVAFRVSDTGIGIAADKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITL 1168 Query: 775 SSSDEGVTTI 784 S+ GV ++ Sbjct: 1169 QST-PGVGSV 1177 >gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 146/290 (50%), Gaps = 43/290 (14%) Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573 ++ S+ P+ PN N+ V ER +T+K E A KAD + K++F+ Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFL 415 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +S+ELR+PL I+G +++++ + +Q + ++ + S LL+L+NDILD + + Sbjct: 416 ATMSHELRTPLNGILGMAQIIESN---IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472 Query: 634 DAGIMKLNYSTIVLNDLLNEVK---QSIATK-----MHENNIRIKVISDGKLGSFVADRQ 685 + ++LN+++ ND+++ + QSI + +NNI K I F+ D+ Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYQSICEDKGLQFIIDNNINEKTI-------FIGDKP 525 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 R+ QI ++SNA+ F+ KGS + A+ V++ G I + K +F Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEP 585 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ R+ G GLGL+IV+ + G++S++SS+ T +P Sbjct: 586 FIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635 >gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 800 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 166/359 (46%), Gaps = 44/359 (12%) Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFA 501 SEG+A P G ++ NPAF + GT ++++ RY +E Sbjct: 155 SEGLAAISPQGILEFLNPAFAQAHSHDSVAELVGTPLKSLFNPDELRRYESE-------- 206 Query: 502 AIITSFD------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552 I+ S + + ++EL D L +S AQ+ ++ + V+ E Sbjct: 207 -ILPSMEFTGNWSGPFANRDISIELRPDGGLLFSS---KEAQSAPQALDTYEEVKQETEQ 262 Query: 553 ------RALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +A+ + N+A +A+ + K+SF+ +S+E+R+P+ +IG T +L ++ ++ Sbjct: 263 LYQQLDQAIAKANQAALEAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQ---ID 319 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q Y++ I AS LL L+NDILD + +++ M+L I + E + +A K Sbjct: 320 DDQRDYLQTIRASGDSLLVLINDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKAS 379 Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NG 717 + + + D G + D RL QI ++ NA+ F+ KG +L R+ N Sbjct: 380 SKGLELCYEASEDIPFG-ILGDATRLRQILVNLIGNAIKFTEKGQIEVLLKTRETDQRNC 438 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+VK++G IP D +F F V ++ + G GLGL+I + L GG + + Sbjct: 439 VIEFTVKDSGIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRV 497 >gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 614 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 26/250 (10%) Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R E EA R+A+E K+ F+ + S+ELR+PL +IGF L+ L + + + Sbjct: 349 RKHQELEEAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLV----LDDMADDEEEQ 404 Query: 610 VEYISAS--STI-LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 +E+I S S I LLNL+ND+LD+A ++A M+L S + L +L+ E+ +S T + Sbjct: 405 LEFIQESHNSAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEEIDKSQRTHIENRG 464 Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--- 721 + ++ L ++ QRL Q+ ++SNA F+ +G+ + + A + F F Sbjct: 465 LEFNIVLPATLDEIKLYSNYQRLKQVLLNLVSNASKFTHEGN-ITITAEINPQSFEFDKK 523 Query: 722 --------SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 SV + G + + +F F V +A Q G GLGL+I + + GG Sbjct: 524 TWPGLVKISVADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVEAMGGK 583 Query: 772 VSISSSDEGV 781 V S EG+ Sbjct: 584 VKFISMGEGL 593 >gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] Length = 917 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 +D +K++F+ ++S+E+R+PL I+GF+ L+ ++++Y+E I +++ +LL L+ Sbjct: 546 SDRLKSAFLANMSHEIRTPLNAIVGFSGLMVNC---DDPEEKAEYMEIIESNNDLLLRLI 602 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILDL+ +++GI++ L + E+ I K+ + + + G DR Sbjct: 603 NDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKITNPEVEFILGNSGPDCWIFLDR 662 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 RL Q++ L+NA+ + G + + + +NG V+++G IP ++ VF RF Sbjct: 663 NRLKQVWMNFLTNAVKCTHSGH-IKMGYSLENGGIKVYVEDSGVGIPYEVQNRVFGRFQK 721 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 Q G GLGL+I + I GG + +S+ +T IP Sbjct: 722 LNEFAQ--GTGLGLAISRAIIEGAGGEIGFTSTPGVGSTFWAWIP 764 >gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 1302 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E +A+ IK+ F+ +S+ELRSPL I+G++ LL+ KL + ++ + I ++ + Sbjct: 927 EVAERANRIKDEFLAVLSHELRSPLNPILGWSQLLQVRKLDEAQTAEALHT--IERNAKL 984 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L++D+LD+A + G + L +++ L + +++ +I ++ +G Sbjct: 985 QTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVKQTAKSKSIALES-QLPNIGQ 1043 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D RL QI +LSN + F+ G V + R VK+ G I D +F Sbjct: 1044 VSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHLKRVGSYAEILVKDTGKGISPDFLPHIF 1103 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 F R+ G+GLGL+IV + HGG + S EG+ T ++P Sbjct: 1104 ESFRQEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAESPGEGLGATFTVQLP 1156 >gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 18/246 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA +E +E K+ F+ +S+E+R+PL ++G LL+ + L + Q Y+ Sbjct: 399 AERAASE--------NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQQFYL 447 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + IS+S L+ ++NDILD A + +G + L L L++E + + E + + Sbjct: 448 DTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLH 507 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 V + G D RL QI +LSNA+ F+ G ++ ++R D +F V + Sbjct: 508 VGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSSRQTQDGSRRLVFCVSD 567 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G + +++ +F F RR G GLGL+I + + + GH+ + S+ + Sbjct: 568 SGIGMRQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSR 627 Query: 784 INCRIP 789 IP Sbjct: 628 FCFEIP 633 >gi|229173899|ref|ZP_04301437.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3] gi|228609537|gb|EEK66821.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3] Length = 448 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y+ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLRIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S + +N++ FS+ G T+ + S+ +NG + + +F Sbjct: 336 IQGDENLLHQVWSNVFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEREEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447 >gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Length = 629 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 36/269 (13%) Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+ E+ +N F+ +++E+R+P+ II + LL ++L Sbjct: 315 ESMRARDQLLEQNVALDFARQEAEMAIRARNDFLAVMNHEMRTPMHAIISLSALLLETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q +E I SS +L L+ND+LDL+ ++ G ++L L+++ +V I Sbjct: 375 ---TPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLELENGVFNLHEIFRQVVDLIR 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + +I L + V D +RL+Q I NA+ F+ +G I+ ++ Sbjct: 432 PIASVKKLSMTLILGPDLPVYAVGDEKRLIQTILNIAGNAVKFTKEGFVSIVASIAKPES 491 Query: 713 ARD---------NGDFIF----SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD +GD F VK+ G I PED+ S F +F + R G GL Sbjct: 492 LRDWRPPEFYPVSGDAHFFLRVQVKDTGCGINPEDIPLS-FTKFAQSRSGSSRNNGGAGL 550 Query: 757 GLSIVESFINLHGGHVSISS--SDEGVTT 783 GL+I FINL GGH+ I S D+G+T Sbjct: 551 GLAICNRFINLMGGHIWIESEGPDKGITV 579 >gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 633 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 21/252 (8%) Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 P+ + L VN +V+ E RA +K E +++ +K++F+ ++S+E+R+PL I+ Sbjct: 373 PDPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 429 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 GF+DLL T ++Q ++ + I ++ +LL L +DI+DL+ +DAG + + L Sbjct: 430 GFSDLLMTV---DDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMPKPVYLY 486 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707 + Q + ++ E + +++ D L + F AD L Q+ + +SNA+ F+ +G+ Sbjct: 487 QFCAMMLQKMKDRVPE-GVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKFTHRGTI 545 Query: 708 VI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764 I + AAR F V++ G I + +VF+RF+ Q G GLGL + +S Sbjct: 546 TIGYQIDAARQLEMF---VEDTGIGISAENQTAVFDRFMKVDSFVQ--GTGLGLPLCKSI 600 Query: 765 INLHGGHVSISS 776 I GG + ++S Sbjct: 601 IEKMGGRIGVTS 612 >gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 648 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ ++V+++V E+AL ++ ++A+ K++F+ ++S+E+R+PL +IG +L+ Sbjct: 113 SIIQVIDVSNAVAREKALEKQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADE 172 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L+ K Q+++ S S+ LL ++NDILD + ++AG + ++ L ++ S Sbjct: 173 ---PLSDKLQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIAS 229 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712 ++ I + S + V AD+QR+ QI +LSNA+ F+ +G V+ K Sbjct: 230 FIPAANKKAISLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKI 289 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + V + G I + +F F + RR G GLGL+I + +L GG Sbjct: 290 DSQTAQLVCKVLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGG 349 Query: 771 HVSISS 776 +++SS Sbjct: 350 ELTLSS 355 >gi|323185298|gb|EFZ70662.1| TMAO reductase sytem sensor TorS [Escherichia coli 1357] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|320200221|gb|EFW74809.1| Sensor protein torS [Escherichia coli EC4100B] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|311894939|dbj|BAJ27347.1| putative two-component system sensor kinase [Kitasatospora setae KM-6054] Length = 362 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASS 617 EA R+ + + V++ELRSPLT++ GFT L +K N Q + +E + A + Sbjct: 117 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATL-LAKWERFNDGQKRVMLETVYADA 175 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDG 675 ++ L+ ++LD++ +DAG +++ + DL V++ +A K+ R + DG Sbjct: 176 DRVVRLIAELLDISRIDAGRLEIRRQRV---DLAAAVRRHVAGKVAAGIPAERFDIRVDG 232 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSV 723 D +L Q+ + +L NA+ T+ + A++ G + +V Sbjct: 233 PPAEQWGDPDKLDQVLANLLENAVRHGEGTVTIEVGPAKELVEVPGTPPRVVEGTAV-TV 291 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G+ IPE+ VF RF + RG G GLGL IV+ + HGG + IS +D G Sbjct: 292 SDQGAGIPEEAMPRVFTRFWRGSRRG---GTGLGLYIVKGIVEAHGGVIRISRADGGGAR 348 Query: 784 INCRIPS 790 +P Sbjct: 349 FRFVLPG 355 >gi|257866230|ref|ZP_05645883.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257873256|ref|ZP_05652909.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257875865|ref|ZP_05655518.1| histidine kinase [Enterococcus casseliflavus EC20] gi|257800188|gb|EEV29216.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257807420|gb|EEV36242.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257810031|gb|EEV38851.1| histidine kinase [Enterococcus casseliflavus EC20] Length = 402 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 3/219 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + + + Sbjct: 163 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 221 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV+D+ + V + +N + L+ ++ + I+I+ + + Sbjct: 222 LVDDLFEYTKVRQPSVPINVMEFDMAQLVEQLAADFELEASRKGIKIETYTRPEHIEMDG 281 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F+ +LSNA+ + + ++ + + I +VKNNG IP+ S+F+RF Sbjct: 282 DTEKLVRVFNNLLSNALKYGKGADKIRMEVEKVGTEAILTVKNNGQMIPKQALDSLFDRF 341 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V + + G GLGL+I +S + LHGG++ S+ E Sbjct: 342 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIYAKSTPE 380 >gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus H143] Length = 2390 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL+ EA RK A + K+ F+ +VS++LR+P+ +IG ++LL Sbjct: 1845 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1904 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ +Q YVE I + LL L+NDILD + ++AG MK++ + L + + EV Sbjct: 1905 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1961 Query: 655 KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ + ++ DG + + D RL QIF +LSN+ F+ KGS + Sbjct: 1962 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 2021 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A D D V + G I + +F F S A R G GLGLSI ++ I Sbjct: 2022 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2080 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2081 EDVLGGKIWL-QSEEGVGT 2098 >gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus A1163] Length = 2333 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 16/231 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K+ F+ ++S++LR+P+ +IG ++LLK + L+ +Q +YVE I + LL L+ Sbjct: 1884 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---ILSKEQDEYVESIRVCADTLLTLI 1940 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681 NDILD + ++AG MK++ + + + ++EV +++ H + + + K+ + Sbjct: 1941 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1999 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737 D RL QIF +LSN+ F+ KGS TV K +R+ + + +V + G IPE+ Sbjct: 2000 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2059 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S+ TT+ Sbjct: 2060 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2109 >gi|146302301|ref|YP_001196892.1| integral membrane sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156719|gb|ABQ07573.1| integral membrane sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 729 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 11/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYI 613 L E E +A +K F+ +S+ELR+PL ++G T+ LL+ K S QSQ++ + Sbjct: 344 LLEAKEIAEEASLLKTQFISTISHELRTPLYGVVGITNMLLEEHKELS----QSQHLSAL 399 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL+LVNDIL + ++ + L T ++D + +K S++ +NN +I V Sbjct: 400 KFSARYLLSLVNDILQINKIEENKVVLESLTFNISDEITMIKNSLSFLSQKNNNKINVEI 459 Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728 D + + + D+ RL QI ++SNA+ F+ G +I+K + G F +++NG Sbjct: 460 DDYIPEYLIGDKLRLGQILMNLVSNALKFTKNGEVDIIVKLHKIEGKLYYLDFLIRDNGV 519 Query: 729 SIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I +F +FV + + +G GLGLSIV+ + L G +++ S T + Sbjct: 520 GIAAVDQNKIFEKFVQVGRKDEDYQGTGLGLSIVKRLLGLFGSTITLESDLGAGTAFSFV 579 Query: 788 IP 789 IP Sbjct: 580 IP 581 >gi|325496973|gb|EGC94832.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ECD227] Length = 912 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S L+ Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLMESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 762 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 139/272 (51%), Gaps = 13/272 (4%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 ++G + +L S E I N T L +N T+ +A+RA + E A + K+ F+ Sbjct: 317 IKGIVTVLRKSQSEAIEIEREN-NTRLETIN-TELTQAKRAAEQAFEVSNNASQSKSDFL 374 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +S+++R+P+ I+G T L++ K +YV+ I S+ LL ++ND+LD++ + Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHD--AGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692 +AG +YS + + + E++ + E + + + + + +V +D L+QIFS Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492 Query: 693 KILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--S 744 +LSNA+ ++ KG + + + F+V +NG + ED +F+ F Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ + +G GLG++I ++ I GG + + S Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584 >gi|260867202|ref|YP_003233604.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] gi|257763558|dbj|BAI35053.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] Length = 914 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 691 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++VT+ AE + + E +A+ K+ F+ +S+ELR+PL +I+GF L K Sbjct: 280 TNMDVTEIKLAEERVLKAKEVAEEANRAKSDFLSSMSHELRTPLNSILGFAQLCDADK-- 337 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL +Q + I + LL LV D+LDLA +++ M + + LL E S+ + Sbjct: 338 SLLPEQRANIAEIRRAGEHLLQLVGDVLDLAKIESRRMGFSLEPVTPARLLAEAVSSLQS 397 Query: 661 K--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + M ++ ++ D VAD RL Q+F +LSNA+ ++ G +V + AR Sbjct: 398 QAEMRGISVTLEPACDESDVDVVADAVRLKQVFLNLLSNAIKYNVDGGSVHVGCARLEEA 457 Query: 719 FI-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F+ +VK++G I E + K + FNR + A + G G+GL I + + GG + Sbjct: 458 FLRVTVKDSGRGIAEHLQKQMYQPFNRLGNEASSIE--GSGVGLVITKQLVEQMGGLIGF 515 Query: 775 SSSD 778 SS + Sbjct: 516 SSKE 519 >gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 758 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 12/224 (5%) Query: 561 ALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616 A RKA+ + K+ F+ +S+ELR+PL IIG+T+L ++ KL S + + + +E + + Sbjct: 391 AKRKAEDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLDS-DDRHVKDLERVIHN 449 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDG 675 LL L+N +LD+A +++G M L+ + + L+ L++E + ++A + ++ I+ ++ + DG Sbjct: 450 GERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDDG 509 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + AD ++LL I +L NA F+ KG V +KA SV + G + + Sbjct: 510 E-SLPKADPEKLLHILINLLGNASKFAPKG-VVSIKAYHRAEKIYISVADTGIGMSPEQQ 567 Query: 736 KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 + +F+ F A G R G GLGLSI L GG + + S Sbjct: 568 QHIFDPF-RQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVES 610 >gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 15/239 (6%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E A + E R+A K+ F+ ++S+E+R+P+ +IG LL + L ++Q Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YV+ I S LL L+N ILD + ++AG ++L+Y +L+ EV + + N Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF-- 719 + + IS G D RL Q+ ++ NA+ F+ G I A +F Sbjct: 261 LALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSC 320 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK++G IP + +F RF R+ G GLGL+I + L GG V + S Sbjct: 321 YFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379 >gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 31758] gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia pseudotuberculosis IP 31758] Length = 930 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] Length = 1457 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L EK + L +A K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1028 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENSERNLTPKQIEFA 1087 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S + LL L++DILDL+ ++AG M + + + ++ + V+Q+ A + E + + Sbjct: 1088 RTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVRFEEIRSYVEQAFAPQAEEKGLDFQ 1147 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719 V ++ + V D QRL QI +LSNA+ F+ G+ T+ + A ++ F Sbjct: 1148 VRVAKDLPPAVVTDAQRLQQILRNLLSNAVKFTDNGAVTLRISRAPEHAVFDVPALINAR 1207 Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F+V + G I +D +F F RR G GLGLSI L GG +++ Sbjct: 1208 QVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLIGGTITV 1267 Query: 775 SSSDEGVTTINCRIP 789 SS+ +T +P Sbjct: 1268 SSAPNQGSTFTLYLP 1282 >gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1390 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 128/219 (58%), Gaps = 12/219 (5%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ F+ ++S+E+R+P+T +IG +LL+ +L +++Q++YVE I S+ LL ++NDI Sbjct: 790 LKSQFLANMSHEIRTPITGVIGMAELLRDMEL---DAEQTEYVENIQRSANALLTVINDI 846 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADR 684 LD + V++G + + L+ ++ +V++ ++ N+ + G++ + + D Sbjct: 847 LDFSKVESGRLDIEEVQFSLSVIVTDVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDP 906 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740 R+ QI + +L+N++ F+++G ++ ++ D I F V+++G I E++ K +F Sbjct: 907 GRVRQIITNLLTNSIKFTNQGYVKFSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQ 966 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F R+ G GLGL+I ++ + L G++++ S+ Sbjct: 967 PFSQGDASTARKFGGTGLGLTICKNLLELMNGNMTLEST 1005 >gi|300929237|ref|ZP_07144716.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] gi|300462803|gb|EFK26296.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|297520345|ref|ZP_06938731.1| hybrid sensory histidine kinase TorS [Escherichia coli OP50] Length = 619 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 386 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 442 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 443 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 502 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 503 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 561 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 562 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 608 >gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium] Length = 823 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 17/262 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++V++ + E + ++++ +A++ K F+ H+S+E+ SPL I+GF++LL + L Sbjct: 558 LDVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKT---PL 614 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q +Y+ I + +LL+++NDILD + +DA + L L+ + K Sbjct: 615 NDTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLLVVKGKA 674 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720 EN I + + D RL Q+ +LSNA+ F+++GS I + F+ Sbjct: 675 KENVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGSIEI--SVNTEKHFLED 732 Query: 721 --------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 SVK+ G IP + K +F+ F+ R G GLGLSI + + GG Sbjct: 733 EQVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARALVERMGG 792 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 + ++SS +T + KE Sbjct: 793 KIWVTSSPGKGSTFAFTVQLKE 814 >gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] Length = 806 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ V A R L + A A + K+ F+ ++S+E+R+P+ I+G LLK + SL Sbjct: 417 DVTEKVDAIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLKNT---SLP 473 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + ++ S S LL ++NDILD + +++ ++L ++ L+++L+ + + + + Sbjct: 474 EELRAVLKNASYSGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVS 533 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI 720 E I V D + V D R+ QI + SNA+ F+ KGS I +++ + + I Sbjct: 534 EKRIGFTVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDKGSVKINASSKIYEGKEAI 593 Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + V ++G + +++ + +F RF R+ G GLG+SI S + + GG + I S Sbjct: 594 YLEVVDSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSK 653 Query: 778 DEGVTTINCRIP 789 TT+ ++P Sbjct: 654 QGLGTTVTIKLP 665 >gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus Af293] gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus Af293] Length = 2333 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 16/231 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K+ F+ ++S++LR+P+ +IG ++LLK + L+ +Q +YVE I + LL L+ Sbjct: 1884 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---ILSKEQDEYVESIRVCADTLLTLI 1940 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681 NDILD + ++AG MK++ + + + ++EV +++ H + + + K+ + Sbjct: 1941 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1999 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737 D RL QIF +LSN+ F+ KGS TV K +R+ + + +V + G IPE+ Sbjct: 2000 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2059 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S+ TT+ Sbjct: 2060 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2109 >gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 883 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 15/253 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ML +VT+ ER L E N+ L + F S++L+ PL + + LL+ Sbjct: 637 MLVIRDVTERREYERMLEESNDRLEQ-------FAYAASHDLQEPLRMVSSYLQLLERRY 689 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +++E+ + + +++ +L + V+ + T+ L+D+L EV + Sbjct: 690 DDDLDEDGQEFLEFAVDGADRMREMIDGLLKYSRVET--RGDPFETVSLDDVLTEVCDDL 747 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717 + E+N I L D +L Q+F +L NA+++S I + A RD Sbjct: 748 QVMIQESNAEITTED---LPRVEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAERDGD 804 Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ SV++NG I PED + VF F RG+ G G+GL++VE I HGG V + S Sbjct: 805 QWLVSVEDNGVGIDPEDTDR-VFEVFQRLHARGEHAGTGIGLALVERIIERHGGDVWVES 863 Query: 777 SDEGVTTINCRIP 789 +T + +P Sbjct: 864 DPGQGSTFSFTLP 876 >gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 955 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 9/260 (3%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEALRK----ADEIKNSFVQHVSYELRS 582 +++ LP Q + + + ER L + +A R+ A+ IK+ F+ +S+ELRS Sbjct: 535 FTLNGLPTVQAICRDITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRS 594 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL I+G+ LL T L +++ + I ++ + L+ D+LD++ + G + L Sbjct: 595 PLNPILGWAKLLNTHTLEPATHQKA--LSIIERNAQLQAELIEDLLDVSRILRGKLTLKI 652 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 ++ L +++ ++I NI+I+ D +G + D RL QI +LSNA+ F+ Sbjct: 653 VSVNLGFIIDSAIETIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFT 712 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760 G V ++ V + G I D +F+ F R G+GLGL+I Sbjct: 713 PTGGKVEIELNSLGNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAI 772 Query: 761 VESFINLHGGHVSISSSDEG 780 + LHGG + S EG Sbjct: 773 ARHLVELHGGTIKAESLGEG 792 >gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica] Length = 1238 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +G+ Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1049 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ +S+E+R+P+ +I+G TDLL +L+++Q ++ I+ + L+ ++NDIL Sbjct: 548 KSAFLAVMSHEIRTPMNSILGMTDLLMEH---ALDAEQRHALQAIARAGDALMIIINDIL 604 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ ++A ++L L++L+ + + + E +++ ++ + +L + D+ RL Sbjct: 605 DLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQVRL 664 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 QI ++ NA+ F+ +GS + +K ++ G+ I FSV ++G I +++F F Sbjct: 665 RQILVNLIGNAIKFTHQGS-IEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFNQGD 723 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGLSI + + L GG + + S +T IP Sbjct: 724 SSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIP 768 >gi|194438003|ref|ZP_03070096.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|256023304|ref|ZP_05437169.1| hybrid sensory histidine kinase TorS [Escherichia sp. 4_1_40B] gi|301022622|ref|ZP_07186493.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301646370|ref|ZP_07246255.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|307137626|ref|ZP_07496982.1| hybrid sensory histidine kinase TorS [Escherichia coli H736] gi|312971125|ref|ZP_07785304.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|194422939|gb|EDX38933.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|299881194|gb|EFI89405.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301075406|gb|EFK90212.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|310336886|gb|EFQ02053.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|315135644|dbj|BAJ42803.1| hybrid sensory histidine kinase TorS [Escherichia coli DH1] gi|315619081|gb|EFU99662.1| TMAO reductase sytem sensor TorS [Escherichia coli 3431] gi|332342435|gb|AEE55769.1| TMAO reductase sytem sensor protein TorS [Escherichia coli UMNK88] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|323165485|gb|EFZ51272.1| TMAO reductase sytem sensor TorS [Shigella sonnei 53G] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia enterocolitica subsp. palearctica Y11] Length = 847 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A R + + + G I E Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786 +F F RR G GLGL I E + GG +S S E +T +N Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521 Query: 787 RIPSK 791 IPS+ Sbjct: 522 AIPSR 526 >gi|300902839|ref|ZP_07120787.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|301302388|ref|ZP_07208519.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|300405106|gb|EFJ88644.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|300842227|gb|EFK69987.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|315258041|gb|EFU38009.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 85-1] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|270159374|ref|ZP_06188030.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|289165811|ref|YP_003455949.1| sensory histidine-kinase / response regulator [Legionella longbeachae NSW150] gi|269987713|gb|EEZ93968.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|288858984|emb|CBJ12910.1| putative sensory histidine-kinase / response regulator [Legionella longbeachae NSW150] Length = 762 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 136/256 (53%), Gaps = 10/256 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ + E L E A+ K F++++ +++R+PLT I+GF+D++K + Sbjct: 210 VDITERKKIEAELNIAKEKAETANRAKTEFLENMRHDIRTPLTGIVGFSDIIKEE---AQ 266 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N + +Y + + ASS LL+ ++++L+ V +G + L +LL + K Sbjct: 267 NPRIKEYADNLVASSHALLDFMDEVLEAIHVSSGEIPRVKKKFELQNLLQHLIDLNKAKA 326 Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI 720 ++ + + D + + + D R+ +I ++L+N+++F+ G + + A+ G + Sbjct: 327 FSKHLELSLDFDKNIPKYLIGDNIRIHRIILELLTNSLNFTDSGFVKLTAQLAKQEGREV 386 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F V++ G IP+D + +F +F ++ +++G +G GLGL++++ F++ G + + Sbjct: 387 ILKFIVEDTGIGIPQDKQQEIFLQFKKLTPSYKGIYKGAGLGLAVLKQFVDELDGEIYVK 446 Query: 776 SSDEGVTTINCRIPSK 791 S+ T C IP K Sbjct: 447 STVSKGTIFTCIIPLK 462 >gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 485 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 17/254 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ L ++ E L +A K+ F+ +S+ELR+PL +II +++ S S + S+Y Sbjct: 221 KAKIGLEDRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAESDEAS--EEISEY 278 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIATKMHEN 665 I S LL ++NDILDL+ V+AG +++ +VL + + + +Q A K Sbjct: 279 GRIIHKSGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQKKIAF 338 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-----F 719 R++ + S ++D QR+ QI +LSNA F+ +G + ++ A G Sbjct: 339 TTRLE---ESLPDSIISDPQRIAQILRNLLSNAFKFTHEGHVELDIRRAPAKGTAEGEWL 395 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +F+V + G + ED ++VF F RR G GLGLSI + L GG++ + S Sbjct: 396 VFTVSDTGIGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRMESK 455 Query: 778 DEGVTTINCRIPSK 791 + +T + +P K Sbjct: 456 EGQGSTFSFYLPLK 469 >gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 959 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 17/267 (6%) Query: 541 TFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 F ++T +AE + L EKN+AL++ DE+K+ F+ + S+ELR+PL +IG ++ Sbjct: 556 VFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSES 615 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + G L Q Q + I+ S L LVNDILD + + ++L + L +++ Sbjct: 616 MLDGVAGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEV 675 Query: 654 VKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 V + +K N I++I++ + AD RL QI ++ NA+ F+ G+ I Sbjct: 676 V--VVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITA 733 Query: 712 AARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + D N + ++ + G I + +F F R+ G GLGL+I + + Sbjct: 734 SVLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLV 793 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792 LH G + + S +T + +P E Sbjct: 794 ELHQGKIWLDSVVGSGSTFSFTLPISE 820 >gi|254389790|ref|ZP_05005014.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] gi|197703501|gb|EDY49313.1| integral membrane sensor signal transduction histidine kinase [Streptomyces clavuligerus ATCC 27064] Length = 478 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + + V V++ELR+PL+NI G+ L+ ++ G + + +V+ + + L ++++D+ Sbjct: 240 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 295 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA DAG ++L + +LL +V + + E ++V + AD RL Sbjct: 296 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 355 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q +LSNA+ + +G +V L+AA V + G I + VF+RF Sbjct: 356 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 415 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV HGG V++ S Sbjct: 416 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 445 >gi|1122856|emb|CAA63920.1| TorS [Escherichia coli K-12] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|46579095|ref|YP_009903.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448508|gb|AAS95162.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232939|gb|ADP85793.1| histidine kinase [Desulfovibrio vulgaris RCH1] Length = 667 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 26/261 (9%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA R + E +A A K SF+ +S+E+R+ L I+G T+L+ + L+ +Q + Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTP---LSGEQRES 179 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + ASS LL L++D+LD + ++A ++L L+ LL +V Q+ ++ NI + Sbjct: 180 LNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISL 239 Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDN 716 +V D D RL Q+ + ++ NA+ F+ KGS +I L++ + Sbjct: 240 DFRVTPDVP-DRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPD 298 Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 G +FS+++ G I ++ +++F F A +R G GLGL+I + + + G Sbjct: 299 GPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMG 358 Query: 770 GHV-SISSSDEGVT-TINCRI 788 G + + SS +G + CR+ Sbjct: 359 GSIWARSSEGQGSSFHFTCRL 379 >gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] Length = 377 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 137/278 (49%), Gaps = 21/278 (7%) Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKN-------EALRKADEIKNSFVQH 575 Y I PL A + ++ ++T+ R E L + L++ D IK+ FV Sbjct: 95 YRIHPLKEAGGYVSKAVIFIEDITEMTRLEEELRDSYIKLENAYAELKELDSIKSEFVSM 154 Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 VS+ELR+PLT I + ++ + LG L Q + ++ I + + ++ LVND+LD+ + + Sbjct: 155 VSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMIQLVNDMLDILRIGS 214 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693 ++L + +L+ V S++ + E+ I + L D ++++Q+ S Sbjct: 215 RRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTL--IECDPKKIMQVLSN 272 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRR 752 +L+NA+ ++ + + D + + S+++NG I E+ +F + FV + + Sbjct: 273 LLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDKDRIFEKFFVMSNEKSADI 332 Query: 753 GVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINC 786 G+GLGLSI + + HGG + S EG T T+ C Sbjct: 333 GMGLGLSITKDIVEAHGGRIWFESRFGEGSTFYFTLPC 370 >gi|332639011|ref|ZP_08417874.1| Signal transduction histidine kinase [Weissella cibaria KACC 11862] Length = 373 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 124/244 (50%), Gaps = 10/244 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609 A+ A+ E+ E R DE+ + +VS++LR+PLT+I+G+ L+ + L K +Y Sbjct: 126 AQAAMAEEREIERSKDEM----ITNVSHDLRTPLTSILGYLGLIINDEDEKLARKDLVKY 181 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + + +LV D+ D V KL ++ + L +L ++ + + ++ + Sbjct: 182 ANTAFSKAGQMKSLVEDLFDYTQVHQVDFKLRWAPLDLAAMLQQLAVNYELEAKNKHVVV 241 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK--NNG 727 +++ V D RL ++F +++NA+ + + V L A + + V+ NNG Sbjct: 242 SAVTNPDTIEMVGDPDRLARVFMNLINNALKYGDGATFVRLTAKTNKSENYVEVRVQNNG 301 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP D K +F+RF V ++ + G GLGL+IV + HGG V + S D+ +T+ Sbjct: 302 EKIPADSIKRLFDRFYRVESSRNTKTGGTGLGLAIVNGVVEAHGGTVRVESDDD-LTSFI 360 Query: 786 CRIP 789 ++P Sbjct: 361 VQLP 364 >gi|326940960|gb|AEA16856.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ + I S+ +NG + ++ +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGMEQEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G V + S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELP 457 >gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum] gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum] Length = 1374 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 138/268 (51%), Gaps = 15/268 (5%) Query: 521 LSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF--VQHV 576 L+++V+ + SI P+ + + + + T ++ + E+++ L + I+ S + + Sbjct: 592 LNNTVIYFDTSISPVLDQFQQILYYHCTKRDVTQKKIDEESKTLEQNKIIEKSRLRISMM 651 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+++R+P++NIIG DLL + L + Q Y+ I SS LLN++NDILD++ ++AG Sbjct: 652 SHDIRTPMSNIIGMADLLYDTPLSN---HQLHYLNIIKNSSNTLLNIINDILDMSKIEAG 708 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695 +++ Y N ++EV +S+A ++ + + D K+ + V RL QI + +L Sbjct: 709 KLEIEYERFDFNSTVSEVVESMAQRVQAKGLELLSYIDPKIPQTLVGPSSRLNQILTNLL 768 Query: 696 SNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 N++ F+ KG I D D + VK+ G I ++ +F F R Sbjct: 769 GNSLKFTDKGEISIFCLLTDETDSEYVIRVEVKDTGIGIKKEALPLLFKAFTQAEGTITR 828 Query: 752 R--GVGLGLSIVESFINL-HGGHVSISS 776 + G GLGL+I + + L G +S+ S Sbjct: 829 QYGGSGLGLAICKELVQLAFNGSISVES 856 >gi|309795016|ref|ZP_07689436.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] gi|308121320|gb|EFO58582.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 840 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%) Query: 552 ERALTEKNEALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +R E + AL KA++ K++F+ +S+E+R+P+ +IG ++LL ++L Sbjct: 415 QRTQFEAHAALEKAEQETRIARHNMRAKSNFLAMMSHEIRTPMNGVIGISELLSHTQL-- 472 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +S Q +YV I S LL LVNDILD + ++A + L L ++L E + K Sbjct: 473 -DSAQQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVDILTPK 531 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----- 715 + + + +++ KL V D RL QI + NA+ F+ KG I + +D Sbjct: 532 IQGSAVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRKGHVTIAVSFQDENFQP 591 Query: 716 ---NGDFI--FSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFIN 766 N D + F+V + G + E+ + +F F +S A Q G GLGL I + Sbjct: 592 HQSNDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTAR--QFGGTGLGLVICKDLAE 649 Query: 767 LHGGHVSISS-SDEGVT 782 L GG + + S S EG T Sbjct: 650 LMGGSIGVHSISGEGAT 666 >gi|298248593|ref|ZP_06972398.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551252|gb|EFH85118.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 983 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 5/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+EL++PLT + T L++ + + + + + Sbjct: 749 NSAPKELEQRKDDFISMASHELKTPLTTLKMQTQLVRKRLERQAHHEAATALSKVEGPVK 808 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L LV ++LD++ + AG ++ T+ L+ LL+EV ++ + I V+ Sbjct: 809 QLERLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTI---VVRGATSC 865 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + V D+ RL QIF+ +LSNA+ +S TV + V+++G IP + + Sbjct: 866 TLVGDKDRLGQIFTNLLSNAIKYSPGAETVEMDLEASEDAVTIRVQDHGLGIPREQRDKI 925 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF A QR G+G+GL IV + HGG +++ S+ +T +P + Sbjct: 926 FERFYRVAGPRQRAIPGLGMGLYIVAEIVMGHGGTITVDSAVGKGSTFMVTLPKR 980 >gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum JL354] Length = 1446 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 12/223 (5%) Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634 ++S+E+R+P+ ++GFT+LL G L+ +Q + + I+ S ++ ++NDILD++ +D Sbjct: 945 NMSHEIRTPMNGVVGFTELLLA---GELSPEQRENAQLIADSGRAMMQILNDILDVSKID 1001 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693 AG M + I L L + + + ++ +++ D + S V AD RL QI + Sbjct: 1002 AGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSRVMADPLRLRQILTN 1061 Query: 694 ILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 ++ NA+ F++KG I + D +V+++G IP D ++F F S A Sbjct: 1062 LVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRLDAIFREF-SQADES 1120 Query: 750 QRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R G GLGL+I + G + +SS + R+P Sbjct: 1121 TARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLP 1163 >gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 604 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 10/231 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621 K D + FV +VS+ELR+PLT + + + L G+ ++ +++E + ++ Sbjct: 372 KIDRDRREFVANVSHELRTPLTTMRSYLEALAD---GAWRDEEIAPRFIEVTQNETERMI 428 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+L L+ +D+ KL + + ++V EN ++ D K+ ++ Sbjct: 429 RLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELTKKENVSFVRDFPDEKIIVYM 488 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 D ++ Q+F I+SNA+ +S +G T+ + + GD+I SVK+ G IP+ +F Sbjct: 489 -DEDKITQVFDNIISNALKYSPQGGTITFRVKK-KGDYIEVSVKDEGVGIPKSDLSKIFE 546 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A + G GLGL+I + + HGG + S + TTI +P Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLP 597 >gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia albertii TW07627] gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia albertii TW07627] Length = 778 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D G+ + F V+++G Sbjct: 381 VLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGEMLHFDVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|170020606|ref|YP_001725560.1| hybrid sensory histidine kinase TorS [Escherichia coli ATCC 8739] gi|169755534|gb|ACA78233.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 904 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 776 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 9/266 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 S V E I PL NA+ + ++T AE+ LT N L KAD K+ F+ + Sbjct: 363 SRGVCETVIKPLANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKADRRKDEFLATL 422 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 ++ELR+PL + ++L+ + + + S + + +LV+D+L+++ + G Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFA--DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQG 480 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 ++L + L + ++ + ++ + V + VAD RL Q+ +L+ Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLN 540 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 NA ++ G T+ L A RD + + V+++G IP + SVF F ++ A + G+ Sbjct: 541 NAAKYTPPGGTISLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGL 600 Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780 G+GL++V LHGG V+ S G Sbjct: 601 GIGLALVRGLAELHGGTVAAFSDGPG 626 >gi|312116060|ref|YP_004013656.1| ATP-binding region ATPase domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311221189|gb|ADP72557.1| ATP-binding region ATPase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 1168 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 39/377 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +DH+ +G+AVF + ++ N FR + + G + I RY + + Sbjct: 655 ALDHVRQGIAVFDKNMQLICWNRQFREILILPQQFGRVGAPLDEIL----RYMAQRVHQN 710 Query: 499 LFAA--IITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551 AA ++T D Q T+E + +E ++ +P ++T+ ++T+ A Sbjct: 711 PTAAEELVT---DRIAKYQLTMESFHERSIEGRVLQVRTNAMPQGGIVVTYTDITERETA 767 Query: 552 ERALTEKNEALR---------------KADEI---KNSFVQHVSYELRSPLTNI-IGFTD 592 AL NE L KADE K F+ S+++ PL + Sbjct: 768 AEALARANETLERRVEARTQELAIAKAKADEANLSKTRFLAAASHDVLQPLNAARLYAAS 827 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L++ S L + I AS + ++N +LD++ +D+G MK ++ + DLL Sbjct: 828 LIERSPPAELG----RLARNIDASLDGVEEILNALLDISRLDSGAMKPEFTVFPIKDLLE 883 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ I K++ G L +DR+ L +I ++SNA+ ++ + +L Sbjct: 884 QIRIDFEPIAKARGISFKILDSGAL--VRSDRKLLRRILQNLISNALKYNREKGRAVLGC 941 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 R D + V ++G IPE +F F H G+GLGLSIVE + G + Sbjct: 942 RRHGRDLVIEVHDSGPGIPEHQRDLIFKEFQRLDHHIHAPGLGLGLSIVERMCRVLGHEL 1001 Query: 773 SISSSDEGVTTINCRIP 789 ++ S E +T +P Sbjct: 1002 ALRSKLEHGSTFTVNVP 1018 >gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae ATCC 10712] Length = 1785 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 24/263 (9%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E+ E L + K+ F+ ++S+ELR+PL +++ LL + +L KQ ++ Sbjct: 1299 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAETNLTPKQVEFA 1358 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LL L+NDILDL+ V+AG M ++ + I L L++ V+ + E + Sbjct: 1359 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1418 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715 V +S + D QRLLQ+ +LSNA+ F+ G+ VI A D Sbjct: 1419 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPQSIREQLLEA 1478 Query: 716 ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 D I FSV + G I + +F F R+ G GLGLSI Sbjct: 1479 GSLRDPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1538 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L GG + +S +T +P Sbjct: 1539 LLGGEIFAASEPGRGSTFTLYLP 1561 >gi|296534470|ref|ZP_06896898.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296265204|gb|EFH11401.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 467 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 9/222 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+E K+ F+ +S+ELR+PL ++G LL + + + + I + LL L Sbjct: 231 QANEAKSRFLARMSHELRTPLNGVLGLAQLLAARQ--DVPPAVREQLAMIEGAGRHLLAL 288 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682 VND+LDLA V+AG + L + + L LL E + + + + + + L V Sbjct: 289 VNDVLDLAQVEAGRLGLQCAPLALQPLLQEALALVRPEAERKRLALALEAAPGLPPAVHG 348 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV--- 738 D +R+ QI +L NA+ F+ G V L A+ G + V +NG IP + Sbjct: 349 DARRIRQILLNLLGNAVKFTPAGGRVTLAASPLPGQGLRLEVVDNGPGIPPGQAARLFRD 408 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 F R A R G GLGL+I G + + + +G Sbjct: 409 FQRLEGGAER--EEGSGLGLAICAGLALAMQGRIGVEAGPDG 448 >gi|262383276|ref|ZP_06076412.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294174|gb|EEY82106.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 666 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V+ + L E +++D++K++F+ ++S+E+R+PL I+GF++L+ T + +++ Sbjct: 420 VKQNKELEVALEKAKESDQMKSAFLANMSHEIRTPLNAIVGFSNLMNTD-IELSKAEREN 478 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + E I+ +S +LLNL+NDILDL+ +++G M ++ LN+L++ + Q+ M E N+ Sbjct: 479 FTELINTNSDLLLNLINDILDLSRIESGRMSFSFQQYSLNELISTIYQTFQVLMPE-NVE 537 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +++ K S D+ RL Q+ + LSNA+ F+ KG +I R+ G + V++ G Sbjct: 538 LRMQIPEKSISIPTDKFRLTQVITNFLSNAIKFTQKGYILIGYEYREEGRHVHIFVEDTG 597 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ +VFNRF +G GLGLSI + G++++ S Sbjct: 598 IGIPKEKQDAVFNRFTKLDEFA--KGTGLGLSICKVIAERFDGYIAVES 644 >gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] Length = 1517 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 18/229 (7%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A++ K+ F+ ++S+E+R+PL IIGFT+LLK + L+ ++ YV+ I SS L Sbjct: 400 AAEDANKAKSIFLANMSHEIRTPLNGIIGFTELLKNT---DLDEEKRDYVDTIEKSSENL 456 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKMHENNIRIKVISDGKL 677 L ++N+ILD++ +++ K+ I+ N D + V+ +A K E NI I + D L Sbjct: 457 LTIINNILDVSKIESN--KVELEDILFNPIQDFESAVEIYVA-KAAEKNIDILLYIDPTL 513 Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFI--FSVKNNGSSI 730 D ++ ++ ++SNA+ F+ + T++++ R+ G+ I FSV++ G I Sbjct: 514 VHHLYGDITKIKEVLINLMSNAVKFTPEHGTIVVEILREPSKAPGEAIVTFSVEDTGIGI 573 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ED +VFN F R+ G GLGL+I ++ + GG + + S+ Sbjct: 574 SEDKLANVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLQVKST 622 >gi|160933151|ref|ZP_02080540.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753] gi|156868225|gb|EDO61597.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753] Length = 898 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/269 (22%), Positives = 135/269 (50%), Gaps = 7/269 (2%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR---KADEI 568 + LQG + ++ Y + + M++ +N + R E+ +A+ + + + Sbjct: 609 RGLQGVMGVVGIPSKYYPVPEVFEKNLMVSILNECGLILERRRFREEKQAIELETQQERL 668 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 +++ ++ +S++LR+PLT+I G +L + K+ + I S L+NL ++L Sbjct: 669 RSNLLRAISHDLRTPLTSISGNAGVLMEKSIVLDEEKKQELYRSIYDDSMWLVNLTENLL 728 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 + ++ G M L +++D+ E + + +++I +++ D L D + ++ Sbjct: 729 SITRIENGTMHLQMGAELMDDVFQEALAHVDRQAKDHHISVELPDDLLLAKM--DVRLIV 786 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 Q+ I++NA+ ++ GS +IL+A + S+ ++G I ++ +F+ F S Sbjct: 787 QVIINIVNNAIKYTPAGSHIILRAEKQGAKVAVSISDDGPGISDEAKIHLFDMFYTASQG 846 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSIS 775 RRG+GLGL++ S + HGG ++++ Sbjct: 847 KPDNRRGLGLGLNLCRSIVTAHGGEITVT 875 >gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri] gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] Length = 744 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 16/249 (6%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 DS +A+RA K ++K+ F+ +S+E+R+PL I+G + LLK+S +LN +Q Sbjct: 354 DSYKAQRAA-------EKLAQVKSDFLARMSHEIRTPLNGILGISSLLKSS---NLNREQ 403 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V + LL ++NDILD + ++ +K+N + L+D+L + N Sbjct: 404 QKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDVLENINAIYFPICKNKN 463 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--FS 722 + + + F+ +D+ RL QI +LSNA+ F+ KG + L + N D+ FS Sbjct: 464 VFFSIENHVNPDVFINSDQVRLTQILFNLLSNAVKFTEKGKVKLTLSLNKHNSDYYLQFS 523 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G I + +F F + R+ G GLGL+IV+ ++L G ++I+S+ Sbjct: 524 VDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGLGLAIVKQLLDLLKGKITINSTIGV 583 Query: 781 VTTINCRIP 789 +T + IP Sbjct: 584 GSTFSVLIP 592 >gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] Length = 738 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 12/231 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 + E + +A K+ F+ ++S+E+R+P+ IIG + L L+T L+ +Q Y+ I Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTD----LDDQQRNYIGKI 56 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + T LL ++NDILD + V+AG ++L L+D+L+ V +A K + + + + Sbjct: 57 HNAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFET 116 Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGS 728 G + V D RL Q+ + + NA+ F+ G ++I+ GD + F V + G Sbjct: 117 AGDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGI 176 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + E+ +F F RR G GLGL+I + + L GG + + S+ Sbjct: 177 GMSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESA 227 >gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine bacterium HP15] Length = 783 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 14/235 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E++EA+R A+ KN F+ +VS+ELR PL +++G+ +LL + L+ +Q +YV + ++ Sbjct: 246 ERDEAVR-ANHAKNQFLANVSHELRIPLQSVLGYANLLTDT---PLDQEQREYVLTLLSA 301 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S L ++ND+LD+++++AG + L L + LN++ + ++ E + +++ D Sbjct: 302 SESLSAIINDLLDISSMEAGKLVLEDIPFDLRETLNDLVHMLGSRAREKGLALELRIDEN 361 Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI- 730 L + D R+ QI + SNA+ F+ G +I L D +V++ G I Sbjct: 362 LPWALKGDPVRIRQILLNLTSNAIKFTDSGHVLISIEVLGRRDDKARLRIAVEDTGVGIN 421 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 PED+ V+ +V + QR+ G GLGL+I + L G + + S EG T Sbjct: 422 PEDV-PLVYEPYVQLGQQFQRQLPGAGLGLTICRQLVGLMDGSMDLESRPGEGST 475 >gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CMR15] Length = 676 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 13/257 (5%) Query: 543 VNVTDSVRAE--RAL-----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +++T+ +AE RAL + E +A +K+ F+ VS+ELR+PL ++G+ LL Sbjct: 266 IDITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 325 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ +E I S+ ++L++D+LD++ + +G + L + L D+L + Sbjct: 326 MRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++I + I + + D RL Q+F +L+NA+ F+ +G V + Sbjct: 384 ETIEPMARQKQITVDT-EYLPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAG 442 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + +V++ G I VF+RF RR G+GLGL+I + + LH G ++ Sbjct: 443 ADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 502 Query: 774 ISSSDEGV-TTINCRIP 789 +SS + TT+ +P Sbjct: 503 AASSGADLGTTMAVTLP 519 >gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia K12] Length = 914 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 119/234 (50%), Gaps = 8/234 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS----KLGSLNSKQSQYVEYISASSTI 619 +A+ ++NS + +S++LR+PLT ++G ++L T G + Q + + S Sbjct: 665 QAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQALSLLQQSRR- 723 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG 678 L +V+D+LD+A + +G + L + +L+ +++ A + ++ ++I + +D L Sbjct: 724 LARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDLPADFPL- 782 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD L ++ +L NA+ F+ G+ + ++A + +V + G +P ++V Sbjct: 783 -VRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAGRERAV 841 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F F GVGLGL+I + + HGG V+ +++ EG N R+P E Sbjct: 842 FETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLPLHE 895 >gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] Length = 592 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 12/250 (4%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R +AL + E+ RKA E+KN+F+ ++S+++R+P+ IIGF+D++ K Sbjct: 197 RLSKALELEKESTRKAKVAGEVKNAFLANMSHDIRTPMNAIIGFSDIIAEHPDDEEIVKN 256 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + I AS ILL ++ND+LDL+ +++G ++ L + +K + + + Sbjct: 257 A--ISKIQASGEILLKIINDVLDLSKIESGKAEIVEMVTDLKQMEENLKMMLEYSIQKGM 314 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIF 721 I KV + D +L Q+ +L+NA+ F+ G T+ A ++ F Sbjct: 315 IDFKVEDQIENPLVWCDATKLQQVLVNVLNNAVKFTQAGGTITFSCVQRMIAPGFAEYKF 374 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 ++K+ G + E+ K F F + + G GLGL+IV+ ++L G V I S+ Sbjct: 375 TIKDTGIGMTEEFQKHAFEAFERERTSTESKTEGTGLGLAIVKKLVDLMHGDVIIQSNSG 434 Query: 780 GVTTINCRIP 789 T I +P Sbjct: 435 QGTKIQISLP 444 >gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 542 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 149/299 (49%), Gaps = 27/299 (9%) Query: 503 IITSFDDE---RKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 I++ +DE R+++Q G E LS + L +I+ ++ S+ R + E Sbjct: 102 ILSGLEDEVIAREAMQHGVQEFLSKNGLSSTILER----------TISHSIERYRLMAEL 151 Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 ++A +KA+ + K+ F+ +S+E R+P+ I+G +LL G ++++ + + Sbjct: 152 SKAKQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNGP---QETELLSMMKQ 208 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 + L L+ D+LD++ ++AG M+L Y DL++ V +++ E +++ V I Sbjct: 209 CAESQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFSAREKGVKLAVDIDR 268 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G V+D +RL Q+ ++ NA+ F+S+G I D F V + G I Sbjct: 269 GLPRELVSDARRLRQVLMNLVGNAVKFTSEGEVRIHARKFDGCLVEFRVTDTGIGISPKY 328 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS----SDEGVTTINCR 787 S+F+ F V +++ + +G GLGL+I + + + GG + + S + TI CR Sbjct: 329 IDSIFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESKVGRGSDFRFTIACR 387 >gi|146299730|ref|YP_001194321.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium johnsoniae UW101] gi|146154148|gb|ABQ05002.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium johnsoniae UW101] Length = 555 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 115/216 (53%), Gaps = 1/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ VS+EL++P+ +I LL+ K G +N Q Q VE I S LL Sbjct: 328 FKELDFAKTNFIATVSHELKTPIASIKLSLQLLENGKTGDMNDDQKQLVESIKDDSQRLL 387 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + ++L+L+ ++ G ++LN ++++ +++ + + I++ V ++ L + Sbjct: 388 KITGELLNLSQLETGNIQLNIGKSNPHEIVKYAVEAVKVQADQKQIQLIVDANENLKNVK 447 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD ++ + LSNA+ +SS+ ST+++K +N +F V + G I VF++ Sbjct: 448 ADAEKTGWVLINYLSNAIRYSSEKSTILIKLKEENDQMVFQVIDTGKGIDTRYKDKVFDK 507 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + Q+ G GLGL+I + FI G+V + S+ Sbjct: 508 YFQ-VPGSQKSGTGLGLAISKEFIEAQNGNVGVESN 542 >gi|116621166|ref|YP_823322.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224328|gb|ABJ83037.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 519 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + E+ EAL +++E F S++L+ PL + + LL G L Q++ Sbjct: 283 EERVVERTEALMRSNEELQQFAYVASHDLQEPLRTVSIYAQLLAKRYQGQLAGDADQFIR 342 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +I S + L++D+LD + VDA ++ + ++ LN+ ++ + + EN V Sbjct: 343 FIVEGSERMEKLIHDLLDFSRVDARGTDY-FTRMSCDEALNDAIGNLYSLIDEN---AAV 398 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730 I+ G L S D +L ++F +L N++ + S+ + I ++A NG+++FSV++NG I Sbjct: 399 ITRGPLPSLTGDPVQLTRLFQNLLVNSIRYRSEAAPRIQVEAQEQNGEWLFSVQDNGIGI 458 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +F F R + G G+GL+I ++ H G + + S+ Sbjct: 459 EPQYAEKIFGIFRCLQPRDKSSGSGMGLAICRKIVSRHEGRIWVESA 505 >gi|323157492|gb|EFZ43602.1| TMAO reductase sytem sensor TorS [Escherichia coli EPECa14] Length = 904 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|300949629|ref|ZP_07163615.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] gi|300957870|ref|ZP_07170046.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300315441|gb|EFJ65225.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300450960|gb|EFK14580.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] Length = 904 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDSRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16] gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16] Length = 870 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 531 IPLPNAQTMLTFVN-VTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 IP+ F + + D++ ++A L E E A++ K+ F+ ++S+E+R+PL Sbjct: 337 IPIDGNDEFTRFAHELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLN 396 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 IIG T++L S+ LN Q + + I ASS LL L+NDILDL+ +++G + L+ T Sbjct: 397 GIIGMTEILSDSQ---LNGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTA 453 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 L +++ + + + + + ++V +D D R+ QI +LSNA+ FS+ Sbjct: 454 NLREIIFDTMNMVNAQALKQEVTLEVEFADDVPVYAEMDEFRVKQILMNLLSNAIKFSAN 513 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 GS ++ + V + G I D +F F RR G GLGL+I Sbjct: 514 GSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICR 573 Query: 763 SFINLHGGHVSISSS 777 + L G + + S+ Sbjct: 574 QLVELMRGELVVESN 588 >gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 925 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + +++ ++ KN F+ + +E+R+PL + G T LL + LN +Q ++V I +S Sbjct: 251 KQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNPQQEEFVNIIRSSG 307 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676 LL ++N+ILD + ++A ++L L + EV + + + + + +I Sbjct: 308 ENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLELAYLIEPNT 367 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSVK 724 + V D RL QI S +L NA+ F+ KG V+ +A+ N + F+VK Sbjct: 368 PSAIVGDSTRLRQILSNLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTLANYELRFAVK 427 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + G I C +F F R+ G GLGL I + L GG + + S++ Sbjct: 428 DTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKMWVHSTE 483 >gi|300982788|ref|ZP_07176298.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|300307053|gb|EFJ61573.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|324013383|gb|EGB82602.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 60-1] Length = 900 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|256018746|ref|ZP_05432611.1| hybrid sensory histidine kinase TorS [Shigella sp. D9] Length = 904 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52] gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395] gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27] gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52] gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395] gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27] Length = 984 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L++E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|328947720|ref|YP_004365057.1| histidine kinase [Treponema succinifaciens DSM 2489] gi|328448044|gb|AEB13760.1| histidine kinase [Treponema succinifaciens DSM 2489] Length = 705 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 166/351 (47%), Gaps = 49/351 (13%) Query: 472 NRLSPGTHIRNIAATCSRYYNES-------DGWDLFAAIITSFDDERK------SLQGTL 518 N +S I I S +YNES D D +A++ + ++D+R S + L Sbjct: 195 NVMSGIIRIVRINDRISSFYNESLEGLPYDDVLDFYASV-SVYEDDRDMIKRAFSRENIL 253 Query: 519 ELLSD----------------SVLEYSIIPLPN----AQTMLTFVNVTDSVRAE----RA 554 + LS S ++ +++ + N ++ F+NV E +A Sbjct: 254 KQLSKRESYYVNFRSYINNKISYMKLTVVRIGNIRETGNVLMGFMNVDTETEHEMKQRKA 313 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A K+ F+ ++S+++R+P+ IIG+T L + +G+ +S I Sbjct: 314 LQEALSMAELASHAKSRFLSNMSHDIRTPMNAIIGYTSLAE-KHIGNPELIKSDLAR-IK 371 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S+ LL L+ND+LD++ +++G +K+ +++ + D+L EV I ++ + V+ Sbjct: 372 TNSSYLLCLINDVLDMSRIESGKIKIKFTSNTIEDILAEVDSVIQPQLQSKKLNYSVLRH 431 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNG--DFIFSVKNNG 727 G L V D+ RL QI IL N++ ++ + ++ AA +G + F +K+NG Sbjct: 432 GNLSRKVFCDKLRLKQILINILGNSVKYTGENGSIKFTAAETPSVSDGYSSYQFRIKDNG 491 Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + E+ K VFN F N +G GLGLSI ++ + G + + S Sbjct: 492 IGMSEEFQKKVFNPFERDENIENFHVQGTGLGLSISKNLVEKMDGSIFLKS 542 >gi|331657054|ref|ZP_08358016.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206] gi|331055302|gb|EGI27311.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206] Length = 715 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 244 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 300 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 301 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 360 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 361 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 419 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 420 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 466 >gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 968 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 139/250 (55%), Gaps = 19/250 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610 +AL+E A A++ K++F+ ++S+++R+P+ IIGFT L + +++ K+ Y+ Sbjct: 441 QALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----AVSNIDDKERVRDYL 496 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I +SS LL+L+NDILD++ +++G + L + + L+D+L+++K I+ ++H + + Sbjct: 497 GKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDILHDLKTIISGQIHAKQLELY 556 Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723 + + D D+ RL Q+ +LSNA+ F+ G TV ++ + G + V Sbjct: 557 MDAMDITNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQRPGTQKGSELYEIRV 616 Query: 724 KNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 K+NG + ++ + +F F S R Q G GLG++I ++ +++ GG + + + Sbjct: 617 KDNGIGMSQEFVQKIFAPFERERTSTVSRTQ--GTGLGMAITKNIVDMMGGTIEVQTEQG 674 Query: 780 GVTTINCRIP 789 T R+P Sbjct: 675 KGTEFIVRLP 684 >gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1467 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 +K E+K F ++S+ELR+PLT I G LK + L+ K QYV+ + ++ +L Sbjct: 934 QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LVN ILD + G M+L+ S LN++++ ++ EN + G+ A Sbjct: 992 LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051 Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D++++ + I+SNA F+ G V + + ++ V+++G IP+ +F Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDEDKHCYVRVEDSGVGIPQSKLSEIFE 1111 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 RF NA +G G+GL++ + I+LH G + S + Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151 >gi|227884054|ref|ZP_04001859.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972] gi|300978247|ref|ZP_07174195.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1] gi|301047751|ref|ZP_07194807.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1] gi|227838806|gb|EEJ49272.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972] gi|300300360|gb|EFJ56745.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1] gi|300409712|gb|EFJ93250.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1] gi|315291163|gb|EFU50526.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 153-1] Length = 900 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15] gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15] Length = 716 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 16/304 (5%) Query: 499 LFAAIITSFDDERKSLQGTLELLS----------DSVLEYSIIPLPNAQTMLTFVNVTDS 548 A S D+R SL L LS LE +P A T TF ++TD Sbjct: 273 FIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTS-TFRDMTDR 331 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E +L A K++F+ ++++ELR+PLT++IGF + ++ +L+ Sbjct: 332 HSLEESLIAARVRAEAAVRAKSAFLANMTHELRTPLTSVIGFAEQIQAEP--ALSPTVRH 389 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + ISA LL+ +NDILD + +++G + + + +N L+ E ++ + + Sbjct: 390 ASDRISAGGRALLSTINDILDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLS 449 Query: 669 IKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + LG A D Q + Q+ ++ NA+ F+ +G + D+G +V + G Sbjct: 450 LSYDGSAVLGLCAALDSQHVRQVLLNLIGNAIKFTEQGGVTVTAQRNDDGMLEIAVADTG 509 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I ED + +F RF RR G GLGL+I GG + +SS+ +T Sbjct: 510 IGIAEDHLERLFGRFSQVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFT 569 Query: 786 CRIP 789 +P Sbjct: 570 LTLP 573 >gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 589 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 22/239 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619 +RK ++I+ FV +V++EL++P+T+I GF + LK G++N+ +++E I + Sbjct: 359 VRKLEQIRTEFVSNVTHELKTPITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 415 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673 L L+NDIL L+ ++ + N L ++++ V Q+IA + NN+R +V+ Sbjct: 416 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL- 474 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 A+ R+ Q+ ++ N + ++ + +V + R++G + SVK+ G IP Sbjct: 475 ------MKANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 528 Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF +G+ RG+ GLGLSIV+ +NL+ G + ++S T +IP Sbjct: 529 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1234 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 28/337 (8%) Query: 458 LSNPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515 + NPA+ S+ + N P + I + R E A + +FD E + L Sbjct: 607 ICNPAYYSMLGYKVNEF-PALVSTIDELIHPDDRIRVEEYREQYLANPVGAFDIEFRMLG 665 Query: 516 ---GTLELLSDS-VLEYSIIPLPNAQT--ML-TFVNVTDSVRAERALTEKNEALRKADEI 568 G LLS V+EY+ PN Q ML T ++T R E A+ E + A+ Sbjct: 666 KSGGYHWLLSRGRVVEYT----PNNQPKRMLGTHKDITRHKRNEVAMLEAKQDAEMANLY 721 Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ IIG +L+ ++ SL +Q Y+E S+ LL ++NDIL Sbjct: 722 KSEFLANMSHEIRTPMNAIIG---MLQLAQRTSLTPQQKDYLEKAGFSAHSLLRIINDIL 778 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG ++L L+ +L+ A K E + + + + G + D RL Sbjct: 779 DFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRL 838 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741 Q+ +LSNA+ F+ G + D G+ F +++ G I ++ ++F+ Sbjct: 839 GQVLINLLSNAVKFTQSGEIEL--GCEDVGERDHRITLKFWIRDTGIGISKEQQATLFDA 896 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R+ G GLGLSI + ++L GG + + S Sbjct: 897 FAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVES 933 >gi|46202643|ref|ZP_00052865.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 848 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 1/190 (0%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + + +RAER L E A+ K F+ +VS+ELR+PL +IGF++++ + G L S Sbjct: 569 IAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMASEMFGPLGS 628 Query: 605 -KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + + YV I S LL ++NDILD+A ++AG M+ + + +++ + + ++ Sbjct: 629 ARYAGYVNDILTSGRHLLAVINDILDIAKIEAGQMEFDMEPVEPAEVVAAAIRIVESRAD 688 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + + + ADR+RLLQI +LSN++ F+ +G V + + D F+V Sbjct: 689 SGGLFLGTHIAEDVPILRADRRRLLQILVNLLSNSVKFTPEGGRVEVTVEKIGVDVGFTV 748 Query: 724 KNNGSSIPED 733 + G + ED Sbjct: 749 ADTGIGMSED 758 >gi|323190649|gb|EFZ75919.1| TMAO reductase sytem sensor TorS [Escherichia coli RN587/1] Length = 900 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|320196519|gb|EFW71142.1| Sensor protein torS [Escherichia coli WV_060327] Length = 900 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|307311622|ref|ZP_07591262.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|306908177|gb|EFN38676.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|315060277|gb|ADT74604.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli W] Length = 899 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646 >gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603] gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603] Length = 733 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 129/256 (50%), Gaps = 19/256 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF T + AE+ K +A KA K++F+ +S+E+R+P+ ++G +L +L Sbjct: 332 TFNQKTVYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +KQ Q++ + S ++ L+N+ILD + ++ G +L+YS L ++ +K ++ Sbjct: 385 --TAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442 Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 E ++ ++ I D + + D+ RL QI +LSNA+ F+ +G + + + G Sbjct: 443 LCFEKGLQFQLHSEIIDTRW--YYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIG 500 Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D F V+++G IP+D +F F RR G GLGL+IV+ L G V Sbjct: 501 DEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTV 560 Query: 773 SISSSDEGVTTINCRI 788 S+ S T R+ Sbjct: 561 SVQSEVGQGTCFEVRV 576 >gi|283797301|ref|ZP_06346454.1| sensor histidine kinase [Clostridium sp. M62/1] gi|291074971|gb|EFE12335.1| sensor histidine kinase [Clostridium sp. M62/1] Length = 373 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 VN+ V R L EK R+A+ KN + +V+++LR+PLT+IIG+ +LL + K Sbjct: 116 VNLNRMVEDIRRLMEKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKTELP 171 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y++ A + L L+ D+ ++ G + ++ + + LL ++ + Sbjct: 172 PEIQKKYIDIAYAKAKRLEKLIEDLFGFTKMNYGKLSMHVGKVDIVKLLGQLLEEFYPNF 231 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 + N+ ++ S+ AD L ++F +++NA+ + + G V+++ + S Sbjct: 232 VDRNLSYELHSNVPAKVIDADGNLLARLFDNLINNAIKYGADGKRVLVQIHAGDEVVSVS 291 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V N G IP D +FN+F V + G GLGL+I +S +++HGG + + S +G Sbjct: 292 VTNYGYVIPADELPLIFNKFYRVEQSRSTHTGGTGLGLAIAKSVVDMHGGTIQVKSDLDG 351 Query: 781 -VTTINCRI 788 V T+ ++ Sbjct: 352 TVFTVKLKV 360 >gi|225027608|ref|ZP_03716800.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353] gi|224955064|gb|EEG36273.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353] Length = 690 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + E + A E K F+ ++S+++R+P+ I+GF+ LL+ + K +Y+ Sbjct: 293 EAELKKSAEQAKNASEAKTRFLFNMSHDIRTPMNAIVGFSGLLEKNLQNE--KKAKEYLG 350 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +SS +LL ++N IL++A +++G L ++ L + V + + N++ Sbjct: 351 KIQSSSNLLLMIINQILEMARIESGTAVLQLKAEDMDALFHRVNTVFEEDIRKKNLQYYA 410 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGD---FIFSVKN 725 D + V D+ +L +I I+SNA+ ++ +G ++ I +AA +N +IFS ++ Sbjct: 411 DLDIRHHYVVCDQTKLQEIMLNIISNAIKYTPEGHSIYVEIHEAASENPSKIHYIFSCED 470 Query: 726 NGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G + E+ V+ F S H + +G GLGLSI++S I L G + + S +G+ Sbjct: 471 TGIGMSEEYLPHVYEEF-SREHTTTENKVQGTGLGLSIIKSMIELMDGSIQVESR-QGIG 528 Query: 783 T 783 T Sbjct: 529 T 529 >gi|209918246|ref|YP_002292330.1| hybrid sensory histidine kinase TorS [Escherichia coli SE11] gi|209911505|dbj|BAG76579.1| two-component sensor kinase [Escherichia coli SE11] gi|324019115|gb|EGB88334.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 117-3] Length = 904 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] Length = 1313 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 15/222 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ +S+E+R+P+ IIG T++ + L + +Y+E IS SS LL+++ Sbjct: 936 ASKAKSDFLSRMSHEIRTPMNAIIGMTNI--AMEENGLKNSTKEYLEKISTSSEYLLSII 993 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ +++G MKL+ S L +L++EV+ I + + + V ++ D Sbjct: 994 NDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVNDDVLYGDY 1053 Query: 685 QRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739 R+ QI +L NA+ F+ SKG+ ++ D D F VK++G I + + VF Sbjct: 1054 MRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISSENKERVF 1113 Query: 740 NRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F ++ H G G GLGL+I + + L G ++ + S Sbjct: 1114 HAFEQAEDDTSIHYG---GTGLGLAICNNLVKLMGSNIELES 1152 >gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] Length = 2319 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL+ EA RK A + K+ F+ +VS++LR+P+ +IG ++LL Sbjct: 1774 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1833 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L+ +Q YVE I + LL L+NDILD + ++AG MK++ + L + + EV Sbjct: 1834 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1890 Query: 655 KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 +++ + ++ DG + D RL QIF +LSN+ F+ KGS + Sbjct: 1891 VRALRYTHRDRGLQTIEDLDGVDPKLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1950 Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 A D D V + G I + +F F S A R G GLGLSI ++ I Sbjct: 1951 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2009 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2010 EDVLGGKIWL-QSEEGVGT 2027 >gi|332976591|gb|EGK13432.1| sensor histidine kinase [Desmospora sp. 8437] Length = 407 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 16/238 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 +RAL +R++ E + FV S+ELR+PLT I T+LL ++ K S + Sbjct: 169 GKRALV----PIRQSWEAQQQFVADASHELRTPLTVIQTRTELLLQHPHQTVQEK-SDDI 223 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + + LVND+L LA D+ ++LN T +++LL EV I ++ Sbjct: 224 SAIYRETRRVRRLVNDLLTLARSDSNQLELNRQTFDVSELLKEVADHFTELTELEGITLQ 283 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + L DR+R+ Q+ +L NA+ F+S G T+ + VK+ G+ I Sbjct: 284 TGIESNLLCN-GDRERIHQLLVILLDNAVKFTSSGGTIHFTCRKKGPQLFIEVKDTGTGI 342 Query: 731 PEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +F+RF +RG R G GLGLSI + ++ HGG++S+ S+ EG T Sbjct: 343 SGKDLPRIFDRF----YRGDRARGRTDGGTGLGLSIAKWIVDKHGGNISVKSNSEGTT 396 >gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19] Length = 1140 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 7/232 (3%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + R + ++EA+ A K+ F+ +S+E+R+P+ ++ +LL SL +K Sbjct: 237 AARTADYVAARDEAV-AATAAKSDFLATMSHEIRTPMNGVMVMAELLAAE---SLPAKAR 292 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ + I+ S LL ++NDILD + ++AG +++ + + + DL +++ K E + Sbjct: 293 RHAQTIAKSGRSLLAVINDILDFSKIEAGKLEVETTEVDILDLCDDIITLFQAKAREKGL 352 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V + V AD RL Q+ S ++SNA+ F+ +G + + SV++ Sbjct: 353 ELAVSAHPDAPRIVPADPVRLGQVLSNLISNALKFTDQGLVAVAIEPGPGRSWKLSVRDT 412 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I D +F F RR G GLGL+I + GG VS++S Sbjct: 413 GIGIAADKLPKIFAAFSQEDQTTTRRFGGTGLGLTIARRLVEAMGGEVSVTS 464 >gi|294812875|ref|ZP_06771518.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|294325474|gb|EFG07117.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 738 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + + V V++ELR+PL+NI G+ L+ ++ G + + +V+ + + L ++++D+ Sbjct: 500 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 555 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA DAG ++L + +LL +V + + E ++V + AD RL Sbjct: 556 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 615 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q +LSNA+ + +G +V L+AA V + G I + VF+RF Sbjct: 616 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 675 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV HGG V++ S Sbjct: 676 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 705 >gi|293369955|ref|ZP_06616522.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634873|gb|EFF53395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 479 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 251 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 310 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++ +L+ ++ + + NI+I+V + K+G Sbjct: 311 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 370 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + VI+ A +D V++ G I KS+F+ Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFD 430 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465 >gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)] gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)] Length = 984 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ +A + E L + D K +F ++S+E R+PLT I+G + L+ +L + Sbjct: 323 SARSYQAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELR-DRLTDADPGLR 381 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + +E + + L LVN +LD + ++AG M+ +Y + L + E+ + + + + Sbjct: 382 EELEVVHRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGL 441 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 +V DR ++ +LSNA+ F+ GS + + + G + +V + G Sbjct: 442 DFRVHCSPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGS-IRVAVGVEEGAAVVTVDDTG 500 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +F RF + NA G G+GL++V+ + LHGG +S +S++ T Sbjct: 501 IGVAAKEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFT 560 Query: 786 CRIP 789 R+P Sbjct: 561 IRLP 564 >gi|162451033|ref|YP_001613400.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161161615|emb|CAN92920.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 794 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 4/231 (1%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A ++ + + ++ ++++LR P+ I + LL + + + ++ I++S L Sbjct: 555 AFKEMERQRQEWIGVIAHDLRQPIQVIATASQLLGRAAGERPVADCRKQLDRITSSIERL 614 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +++D+LD + +DA + L+ S + L L E+ + A + +R++V +G + + Sbjct: 615 RRMIDDLLDASRIDARQLTLDRSPVNLRAQLGEILEKSAEVTAGHALRLEV--NGDVPAV 672 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +AD RL QI + +LSNA + +++ G +V N G IPE +F Sbjct: 673 LADPGRLEQIVTNLLSNAAKYGRPDGDIVVAVDAGPGSAHVAVTNWGGGIPEASLPYLFK 732 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +A RGVGLGL I ++ + HGG +S+ SS G TT +P Sbjct: 733 RFSRAPDAVPRSVRGVGLGLYITKALVEAHGGSISVESSPSGATTFRFSLP 783 >gi|120556578|ref|YP_960929.1| multi-sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120326427|gb|ABM20742.1| multi-sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 638 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ +K+ F+ VS+ELR+PLT+I G LL T+ +G L+ K Q ++ +S L Sbjct: 409 KEAERLKSEFISTVSHELRTPLTSISGALSLLTTNAVGELSGKAQQLLKIAQRNSDQLGF 468 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+LD+ + AG M N +++ + E ++I E NI + + + A Sbjct: 469 LINDLLDIEKLIAGKMDFNVIEFPVSEAITESLENIQNYATEKNITLNA-QELSTTTVKA 527 Query: 683 DRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D+QRL Q + ILSNA+ FS G I G I+ V++ G I + + +F + Sbjct: 528 DKQRLAQALNNILSNAIKFSPVNGQIRIWTKLHGQGLRIY-VQDEGPGIAPEFRERMFQK 586 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F S A RR G GLGL+I + + G V +S T +P+ Sbjct: 587 F-SQADSSDRRSKGGTGLGLAITKELMARMEGDVDFTSEAGQGATFWLEVPA 637 >gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1098 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 14/245 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T A+ ++E A E K+ F+ ++S+E+R+P+ ++G LL ++L Sbjct: 411 IDITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETEL--- 467 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N++Q V I S+ LL+++NDILD + ++AG M L + L L+ + + Sbjct: 468 NTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQA 527 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS-----KGSTVILKAARDN 716 I + + D L + +D RL Q+ I+ NA+ F+ KG + D+ Sbjct: 528 SNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSNDDVKGKVWVSATLNDH 587 Query: 717 --GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771 +I V++NG + E+ K +FN F R G GLGLSI S + L GG+ Sbjct: 588 EIAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTGLGLSITNSLLELMGGN 647 Query: 772 VSISS 776 + + S Sbjct: 648 IKVDS 652 >gi|323174897|gb|EFZ60512.1| TMAO reductase sytem sensor TorS [Escherichia coli LT-68] Length = 904 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1033 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 195/427 (45%), Gaps = 53/427 (12%) Query: 380 SVYKSSETHKDT-WHLPNGQTLHVIVTSNP--------RGGTIWMFENLTVQVDLE-TKY 429 SV + K+T + +GQ L V++ P G +I+ + Q + E TK Sbjct: 331 SVLEGENVEKETVRYCRDGQPLDVLIKGGPVYVAGEIVGGYSIYSDISGRKQAERELTKQ 390 Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCS 488 N L++ I+ + + +A+ PD IK N A +++L K+ E Sbjct: 391 NQLLE---GIINGIPDILAIQYPDHSIKRYNQAGYQALNKSPEQ-------------VAG 434 Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSII------PLPNAQTMLT 541 R E G D + + R++L GTL+ + V E + P+ N Q + Sbjct: 435 RKCFELIGRDRECEVCAT----REALNTGTLQQVEKYVPELDVYMDCRSNPIFNEQGEIL 490 Query: 542 FV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 ++ ++T + E L E A + K+ F+ ++S+E+R+P+ I+G +++ + Sbjct: 491 YIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMV-S 549 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ S++ + SA S L ++NDILDL+ V+AG +++ + L V Sbjct: 550 ARTDDEESRRLMKMTLESARS--LQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMD 607 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711 + + E NI +++ + G D+ RL Q+ ++SNA+ F+S+G ++ ++ Sbjct: 608 LYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRVRPVQ 667 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 AA F V++ G I ED +F+ F + + + +G GLGL+I + + G Sbjct: 668 AASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLVQMMG 727 Query: 770 GHVSISS 776 G + S Sbjct: 728 GDIQAQS 734 >gi|168186495|ref|ZP_02621130.1| sensory transduction histidine kinase [Clostridium botulinum C str. Eklund] gi|169295498|gb|EDS77631.1| sensory transduction histidine kinase [Clostridium botulinum C str. Eklund] Length = 1668 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 133/243 (54%), Gaps = 10/243 (4%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQS--QYVEYISA 615 NE++ K +E++ F ++S+ELR+PL I G+ L +L++K+ +Y++ + Sbjct: 1400 NESI-KYEEMRTEFFANISHELRTPLNVIFSGYQMLNLLLGNENLDNKEKVDKYMDTMKQ 1458 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L+ L+N+++D+ +D+G +LN + + ++ + S+A + I + + Sbjct: 1459 NCYRLVRLINNLIDITKIDSGFFELNMINVNIVSIVETITLSVAQYIESKGINLIFDTFV 1518 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 + D ++ +I +LSNA+ F++KG + + ++ + I SVK++G IP++ Sbjct: 1519 EEKVMACDVDKIERIILNLLSNAVKFTNKGGNIFVTMYEEDDNIIISVKDDGIGIPQEKQ 1578 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS----DEGVTTINCRIP 789 +F+RF V + R G G+GL++V+S + LHGG++S+ S E + + C + Sbjct: 1579 AIIFDRFIQVDKSLSRNREGSGIGLALVKSIVELHGGNISLKSKLREGSEFIIKLPCNVL 1638 Query: 790 SKE 792 K+ Sbjct: 1639 EKQ 1641 >gi|148543357|ref|YP_001270727.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|184152767|ref|YP_001841108.1| two-component system histidine kinase [Lactobacillus reuteri JCM 1112] gi|227364431|ref|ZP_03848521.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|325683630|ref|ZP_08163146.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A] gi|148530391|gb|ABQ82390.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri DSM 20016] gi|183224111|dbj|BAG24628.1| two-component system histidine kinase [Lactobacillus reuteri JCM 1112] gi|227070524|gb|EEI08857.1| integral membrane sensor signal transduction histidine kinase [Lactobacillus reuteri MM2-3] gi|324977980|gb|EGC14931.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A] Length = 381 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 139/263 (52%), Gaps = 15/263 (5%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q ++T VN + DS A R++ ++ RK ++ K+ + +VS++LR+PLT+IIG+ L Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S +Y + + LV+D+ + V +N I LN L+ + Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233 Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S + I I VI + + AD ++L ++F+ ++SNA + + S + + Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRIN 291 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769 A ++N + V N+G+ IPE +F RF + A R + G GLGL+IV+S ++LH Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G V ++S+++ I +P K+ Sbjct: 352 GSVKVTSTEDETAFI-VTLPLKQ 373 >gi|293394393|ref|ZP_06638692.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM 4582] gi|291423082|gb|EFE96312.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM 4582] Length = 1209 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 32/354 (9%) Query: 454 GRIKLSNPAFRSLWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504 G + +SNPA+R+ + E ++ SP + AA R ++ + + Sbjct: 596 GELVMSNPAWRNFFHGEARETGLCGPQHVASPLHQVWQTAA--ERLLDQHNPHHSHTDTV 653 Query: 505 TSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQT---MLTFVNVTDSVRAERALTEKNE 560 FD ER+ +V+ Y++ +A + ++++T+ +AL + E Sbjct: 654 DIFDGERQR----------TVVHYAVTYARSDAHVDGLICAWMDITEHQALAKALHDARE 703 Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 +A+ K++F+ +S+E+R+P++ IIG +L + + + + V + SA S L Sbjct: 704 NAEQANRAKSTFLATMSHEIRTPVSAIIGLLELAVKTSDQARDREDPVRVAWESARS--L 761 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679 + ++ DILD+A +++G ++L+ + +LL V + + +R++ +L Sbjct: 762 MGVIGDILDMARIESGRLELSPEWLRTTELLPPVVRVFEGLARQKGLRLRSSLPTQLPYE 821 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-GDFIFSVKNNGSSIPEDMC 735 D R+ Q+ S ++SNA+ F+ +G I L A D SV+++G I E Sbjct: 822 IFVDPLRIRQVISNLVSNAVKFTEQGGIDIDLDLAALPDGRAQLNISVQDSGRGISEAEQ 881 Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+ +V + G GLGL+I +N+ GG +++SS T ++ IP Sbjct: 882 QDIFDPWVQAKNGSVTGGSGLGLAICAQLVNMMGGEIAMSSRPAQGTRVSFSIP 935 >gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 668 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 5/237 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ + A+ + A +A++ K+ F+ +S+ELR+PL I+G+ L +L Sbjct: 268 MDITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLFDYDT--NL 325 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q ++ + + T LL+L+N++LDLA ++AG M L+ + LL+E + ++ Sbjct: 326 TPDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLA 385 Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFI 720 E I I+ + + + AD RL Q ++SNA+ +++K GS I A G Sbjct: 386 QEQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLR 445 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G IP+ + VF F +A G G G+GL I + + + GG + S Sbjct: 446 IMVTDTGRGIPDALQAQVFEPFNRLHAELGAVEGSGVGLVITKRLVEMMGGTLGFHS 502 >gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33] gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33] gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9] gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33] gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9] gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33] gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] Length = 984 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L++E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 2198 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 16/243 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A +L +K E L + + K+ F+ ++S+ELR+PL +++ LL + +L +KQ +Y Sbjct: 1510 QARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNIDNNLTTKQVEY 1569 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I ++ T LL L+NDILDLA +++G M ++ + + L +L +++++ + Sbjct: 1570 SQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQIERTFRQVAQSKGLAF 1629 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFI----- 720 + L + + D +RL Q+ +LSNA F+ +G + A G D + Sbjct: 1630 TIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQGEVRLQIAVAKQGWSNDQVTLNRA 1689 Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV + G I D K +F F RR G GLGLSI L GG + Sbjct: 1690 QNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLSISREIARLFGGEIK 1749 Query: 774 ISS 776 ++S Sbjct: 1750 LTS 1752 >gi|167761783|ref|ZP_02433910.1| hypothetical protein BACSTE_00123 [Bacteroides stercoris ATCC 43183] gi|167700289|gb|EDS16868.1| hypothetical protein BACSTE_00123 [Bacteroides stercoris ATCC 43183] Length = 644 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 24/243 (9%) Query: 550 RAERAL-TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 R E AL T+K E LR A K+ F+ ++S+E+R+PL + GF+ LL L N Sbjct: 390 RQEIALSTQKLEHLRTNAENATSAKSIFLSNMSHEIRTPLNALSGFSSLLTEENLD--NE 447 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLN--DLLNEVKQS 657 + Q E I +S +LL L+ND++DL++++ G I K N I N D ++++KQ+ Sbjct: 448 TRRQCNEVILQNSELLLKLINDVIDLSSLEFGKIQFCINKYNVVNICRNVIDTVSKIKQT 507 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 A I I++ + D RL Q+ +L NA F+S+GS ++ + Sbjct: 508 QAA--------ICFITELESMDIETDDARLQQVLINLLINATKFTSQGSIILELRKQSEQ 559 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + +FSV + G IP++ ++F RF Q G GLGLSI + I GG + I S Sbjct: 560 ELLFSVTDTGCGIPKEKQAAIFRRFEKLNENAQ--GSGLGLSICQLIIEHIGGKIWIDSD 617 Query: 778 DEG 780 G Sbjct: 618 YTG 620 >gi|73855027|gb|AAZ87734.1| sensor protein torS [Shigella sonnei Ss046] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 453 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 8/234 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTIL 620 RK + ++ FV +VS+ELR+PLT+I GF + L G++ ++E ISA L Sbjct: 224 RKLERMRTEFVANVSHELRTPLTSINGFVETLLD---GAIEEPIIARNFLEIISAEGKRL 280 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 N+++D+L L+ ++ KLN + L +++ + E NI+I KL Sbjct: 281 ANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPKLPLV 340 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D+ L Q+ ++ NA+ ++ G TV + + + +V + G IP + VF Sbjct: 341 PGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKFNEHEVTVTVSDTGIGIPIESIPRVFE 400 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A + G GLGLSI + + HGG + + S G + + +P KE Sbjct: 401 RFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDSSG-SQFSFSLPLKE 453 >gi|323175873|gb|EFZ61467.1| TMAO reductase sytem sensor TorS [Escherichia coli 1180] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 908 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K++F+ ++S+ELR+PL IIG++++L+ S ++ ++ I + LL L+ Sbjct: 529 ASRAKSAFLANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPDIQKIHHAGRHLLGLI 588 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 NDILD++ ++AG M+L+ L L+ V ++ N+ R+ + LG AD Sbjct: 589 NDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECAADLGMMAADL 648 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKS 737 +L QI +LSNA F+ G V L+ R +G +F + + G + E+ Sbjct: 649 AKLRQILVNLLSNACKFTQHGQ-VTLRVQRLRSETDPQSGTVVFEIADTGIGMSEEQIAR 707 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 +F F S A R G GLGL+I F + GG + + S Sbjct: 708 IFQPF-SQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQS 748 >gi|300819426|ref|ZP_07099623.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331667386|ref|ZP_08368250.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] gi|300528022|gb|EFK49084.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331064971|gb|EGI36866.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|299148168|ref|ZP_07041230.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298512929|gb|EFI36816.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1365 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 802 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 862 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQ 919 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 920 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 980 WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055 >gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1202 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 13/221 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+PL IIGFTDLL S+L + Q +Y++ I S+ L++++ND+LD + Sbjct: 691 FLANMSHEIRTPLNGIIGFTDLLMRSEL---ENSQQKYMQTIYNSAISLMDIINDVLDFS 747 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 ++AG ++L+ L +L ++ + + H+ + + + KL +V AD RL QI Sbjct: 748 KIEAGKLELSEERTDLIELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYADAVRLRQI 807 Query: 691 FSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + +L N++ F+ +G S+ + FIFS+++ G I K +F+ F Sbjct: 808 LTNLLGNSVKFTHEGEIELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLKKIFSAFDQ 867 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 R+ G GLGL+I +NL + ++S +EG T Sbjct: 868 EDASTTRKYGGSGLGLTISNKLLNLMDSKLELTSVLNEGST 908 >gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 873 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 24/352 (6%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRL--SPGTHIRNIAATCSRYYNE 493 E +H + + + PDG I NPAF L + T E + SPG ++ + Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPD-------TD 294 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFV----NVTDS 548 + L + + R + + +E + P+ + +L F+ ++TD Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDITDR 354 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS- 607 R ER L+ + +KA + K+ F+ ++S+E+R+P+ I+G +++L L + N ++ Sbjct: 355 RRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRREPR 410 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + + S+ L+ ++NDILD + V+AG + L L+ A + + N+ Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKKNL 470 Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 ++ V + + V D+ R+ QI ++ NA+ F+ +G V+LK F FSV + Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFSVSDT 529 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IPED + ++F RR G GLGL+I + I+++ G + + S Sbjct: 530 GIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHS 581 >gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1092 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E+ R+A +K+ F+ ++S+E+R+P+ ++G T+LL S L +Q + Sbjct: 580 ALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQS---GLTEEQRSLALSV 636 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + S LL ++NDILD + +++G ++L + + V + +A H N+ + Sbjct: 637 TQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELTYWI 696 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729 ++ + V D RL Q+ +L NA+ F+++G I AA D SV + G Sbjct: 697 AAEMPARVRGDAARLRQVLLNLLGNALKFTAEGEIAIQATFDAAADR--LRVSVADTGIG 754 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IPE +F F + RR G GLGL+I +S + L G + I S Sbjct: 755 IPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIES 803 >gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1080 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 5/227 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ F+ +S+ELR+PL I+G+ LL++ + S K Q + I ++ + LV Sbjct: 712 NRMKDEFLAVLSHELRTPLNPILGWAKLLQSPLVSS--DKLQQGLSAIERNAKQQVQLVE 769 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD++ + G + L++ I L++ + +++ I+++V+ D +G D Sbjct: 770 DLLDISRIIRGKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDAD 829 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL Q+ +LSNA+ F+S G V ++ + V + G I + VF F Sbjct: 830 RLQQVVWNLLSNAIKFNSTGGWVTVQLTSVDRHAQIQVSDTGKGIQPEFLPHVFELFQQQ 889 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL+I + HGG ++ S+ EG+ T ++P Sbjct: 890 DSSSTRSFGGLGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLP 936 >gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208] Length = 459 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620 L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ +S +T L Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTGKEQAEYLTVLSEETTRL 288 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L +L LA++D + L + ++ Q E + I + D ++ Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL--DLAEVNY 346 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D + L Q++S +L+NA+ F+ G + + + + V+++G I + +F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPPGGNIQIHLYEEGTNVFVEVRDSGVGISKSDMAKIFE 406 Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457 >gi|308126034|ref|ZP_05778782.2| PAS domain protein [Vibrio parahaemolyticus K5030] gi|308114726|gb|EFO52266.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 780 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 261 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 317 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 318 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 377 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 378 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 437 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 438 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 496 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 497 STFTVSIHVP 506 >gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 785 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 141/270 (52%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + + + ++T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL ++ ++ Y I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + L R + + VK+ G I + +F RFV Q G GLGLSI + Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1009 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 20/245 (8%) Query: 555 LTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + E EAL+ A + K F+ +S+E+R+P+ IIG+TDLL+ + L L ++Q+ Sbjct: 603 IQENQEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQAEQA 662 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 I S LL L+N+ILD + +++ ++L S + + ++ E + I + E + Sbjct: 663 SI---IKRSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKAL 719 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD---FI 720 +I IS+ ++ D RL QI +NA+ F+ GS I LK + + D Sbjct: 720 KIDFEISETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALY 779 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777 F V + G IPED +F F V ++ Q G GLGL I + I G V +SS Sbjct: 780 FRVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQV 839 Query: 778 DEGVT 782 EG T Sbjct: 840 GEGTT 844 >gi|325679572|ref|ZP_08159148.1| histidine kinase A domain protein [Ruminococcus albus 8] gi|324108729|gb|EGC02969.1| histidine kinase A domain protein [Ruminococcus albus 8] Length = 849 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 9/220 (4%) Query: 559 NEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 NEA+ K++ +K V +VS++L++PLT+II + DLLK S L+ + S YV+ + Sbjct: 609 NEAVEERIKSERMKIELVANVSHDLKTPLTSIISYIDLLKKS---DLDDEASAYVQILDK 665 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S L ++V D+ LA +GI ++ + L N+ K+ ++ +KV Sbjct: 666 KSQKLKSIVADVFSLAKATSGI-DVSMEELDFVMLFNQSLADADDKIKQSGKTVKVTVSE 724 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 V D +L ++F I+ NA+ +S GS + L+ R + +F+ KN SS P D Sbjct: 725 DSAPIVGDGAKLYRVFQNIIDNALKYSMDGSRIFLEIGRVGKNIVFTAKNT-SSYPIDFT 783 Query: 736 -KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + + RFV G GLGLSI +SF GG I Sbjct: 784 PEEITERFVRGDSSRTDGGSGLGLSIAKSFTEACGGRFDI 823 >gi|283788151|ref|YP_003368016.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Citrobacter rodentium ICC168] gi|282951605|emb|CBG91305.1| aerobic respiration control protein (bifunctional two-component sensor kinase/response regulator) [Citrobacter rodentium ICC168] Length = 778 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L V D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 VLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS-SDEGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +++G T Sbjct: 440 IGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKSMGGDITVASQTNKGSTF 499 Query: 783 TINCRIPS 790 T+ P+ Sbjct: 500 TLTVHAPA 507 >gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50] gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50] Length = 1238 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +G+ Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 508 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A+ +K++F+ ++S+E+R+PL I+GF+ +L + + ++K+ Y+ I Sbjct: 271 LLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSIL-SDYIQDEDTKE--YIHIIE 327 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +LL L+NDILDL+ ++AGI++ + +N L+E+ Q++A + + I+++ Sbjct: 328 ENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEM-QTMAKLKLPSEVSIRLLPG 386 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +R+ Q+ + LSNA+ + +G I F V++ G IP + Sbjct: 387 ADYCIIHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEK 446 Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K VF RFV N+ ++G GLGLSI G V +SS Sbjct: 447 QKDVFERFVKLNSF---KQGTGLGLSICTMIAEKMNGKVGVSS 486 >gi|253773977|ref|YP_003036808.1| hybrid sensory histidine kinase TorS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325021|gb|ACT29623.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 899 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646 >gi|149914194|ref|ZP_01902725.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b] gi|149811713|gb|EDM71546.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b] Length = 482 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A EIK+ F+ +S+ELR+PLT+I DL+ + + + +E +S L Sbjct: 222 KRAYEIKSQFLSTMSHELRTPLTSIKFSLDLMNSGCVAQVPDDLKPILEIAVKNSNRLAE 281 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ LDL +++G M + ++ ++ +++E +I + + I ++ Sbjct: 282 LINETLDLQKIESGEMIFRFQSLDISRVVSESVDAIMAQANAEQIEVRKEFPEDEVFING 341 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D R+ Q+ +LSNA+ FS G + ++ ++N SV++ G+ IPE+ VF RF Sbjct: 342 DEARIQQVLGNLLSNALKFSEAGGVITVRVEQNNDRVRVSVQDTGTGIPENCEAQVFGRF 401 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 V ++ R + G GLG++I + I H G + S EG T Sbjct: 402 SQVDSSDRRKVGGTGLGMNISKRIIERHNGTIHYKSRLGEGTT 444 >gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2] gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2] Length = 984 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + I D + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|81246095|gb|ABB66803.1| sensor protein torS [Shigella boydii Sb227] gi|320187205|gb|EFW61906.1| Sensor protein torS [Shigella flexneri CDC 796-83] gi|332093573|gb|EGI98631.1| TMAO reductase sytem sensor TorS [Shigella boydii 3594-74] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|193070789|ref|ZP_03051723.1| TMAO reductase system sensor TorS [Escherichia coli E110019] gi|192955900|gb|EDV86369.1| TMAO reductase system sensor TorS [Escherichia coli E110019] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550] gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550] Length = 448 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ T+ I S+ +NG + ++ + +F Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEEMERIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447 >gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 715 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 6/237 (2%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T + EA A+ IK+ F+ +S+ELR+PL I+G++ LL+ KL ++ Q + I Sbjct: 324 TARAEA-ETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLDP--TRTFQALATIER 380 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 ++T+ + L+ D+LD++ + G + +N + + L ++ +++ I++ Sbjct: 381 NATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETMRLAAESKLIQVLTNFPP 440 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 +G + D RL Q+ +LSNA+ F+ G + + + G V + G I + Sbjct: 441 NIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFL 500 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789 VF+ F RR G+GLGL+IV + +HGG V+ S +E + R+P Sbjct: 501 PYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557 >gi|283851817|ref|ZP_06369094.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572733|gb|EFC20716.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 484 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ + ++ F+ VS+E+R+PLT+I +L++ LG +N +Q ++++ S + Sbjct: 248 LKEEERMRTDFIDMVSHEIRTPLTSIRESVNLMRERVLGEVNERQKRFLDIASDELQRIS 307 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++ +L ++++ + I+ L+ +T +LL E + ++R+ + S + Sbjct: 308 TMLTSLLKVSSMASQIVDLSPTTFNPEELLRETLEKAGPAAEAKDLRLTPRVGRDIVSVM 367 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 DR+ L Q ++ NA+ FS +V+ L+ A +FS+ + G IPE+ VF Sbjct: 368 GDRELLGQALYNLIGNAVKFSPVERSVLVGLEMADGGQKLLFSITDEGPGIPEEEQSHVF 427 Query: 740 NRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +++ +RG R G+GLGLSI + + HGG++ +SS T IP Sbjct: 428 SKY----YRGARTKRTTDGIGLGLSIARTIVEAHGGNIWLSSLPGKGCTFYFTIP 478 >gi|191166564|ref|ZP_03028393.1| TMAO reductase system sensor TorS [Escherichia coli B7A] gi|190903369|gb|EDV63089.1| TMAO reductase system sensor TorS [Escherichia coli B7A] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|301309331|ref|ZP_07215273.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300832420|gb|EFK63048.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 666 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V+ + L E +++D++K++F+ ++S+E+R+PL I+GF++L+ T S +++ Sbjct: 420 VKQNKELEVALEKAKESDQMKSAFLANMSHEIRTPLNAIVGFSNLMNTDIELSKEEREN- 478 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 + E I+ +S +LLNL+NDILDL+ +++G M ++ LN+L++ + Q+ M E N+ Sbjct: 479 FTELINTNSDLLLNLINDILDLSRIESGRMSFSFQQYSLNELISTIYQTFQVLMPE-NVE 537 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +++ K S D+ RL Q+ + LSNA+ F+ KG +I R+ G + V++ G Sbjct: 538 LRMQIPEKSISIPTDKFRLTQVITNFLSNAIKFTQKGYILIGYEYREEGRHVHIFVEDTG 597 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ +VFNRF +G GLGLSI + G++++ S Sbjct: 598 IGIPKEKQDAVFNRFTKLDEFA--KGTGLGLSICKVIAERFDGYIAVES 644 >gi|300823946|ref|ZP_07104069.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] gi|300523578|gb|EFK44647.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|296503742|ref|YP_003665442.1| two component system histidine kinase [Bacillus thuringiensis BMB171] gi|296324794|gb|ADH07722.1| two component system histidine kinase [Bacillus thuringiensis BMB171] Length = 458 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + + + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDAIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457 >gi|294666715|ref|ZP_06731951.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603540|gb|EFF46955.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 726 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 15/247 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA+T R A++ K+ F+ ++S+E R+PL + G T++L T++ L+++Q + + Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I AS+ LL+LV ++LD++ ++AG ++++ L DL+ V + + + Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQAKTRGLDYGTE 289 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725 + + D L Q+ +L NA+ F+ G V+L+ AR +G+ F V++ Sbjct: 290 VATDVPDLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARLSGNGADTVRLRFDVED 348 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +G +P DM +F F A G R G GLG +I + + GG + + + G + Sbjct: 349 SGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGGS 407 Query: 783 TINCRIP 789 +P Sbjct: 408 VFWFELP 414 >gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 700 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 128/247 (51%), Gaps = 12/247 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL----NSKQS 607 ER L E E +++ F ++S+EL++PL I+G +L L + Sbjct: 429 ERVLNETIEY----NKLLTEFFSNISHELKTPLNVILGAIQILNLPHDFELPQPFEENLN 484 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y + + LL LVN+++DL+ D+G +KLN S + ++ E+ S+A + + Sbjct: 485 KYHRVMKQNCYRLLRLVNNLIDLSKFDSGFLKLNLSNQNIVSVVEEITLSVADYVESRGL 544 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726 I +D + D ++ +I +LSN++ F+ K ++++ + D G+ + SV++ Sbjct: 545 SITFDTDCEEKIIAVDADKIERIILNLLSNSIKFTDKDGSILISIS-DKGEMVSISVRDT 603 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP+D +++F RF V R G G+GLS+V++ + +HGG + ISS + + + Sbjct: 604 GIGIPKDKLETIFERFGQVDKTLTRNREGSGIGLSLVKTLVEMHGGVIKISSMEGKGSEV 663 Query: 785 NCRIPSK 791 +P K Sbjct: 664 YIELPVK 670 >gi|83309372|ref|YP_419636.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944213|dbj|BAE49077.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 537 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 8/241 (3%) Query: 554 ALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 AL E EAL R+ D I+ +F V++E+++PLT++ ++T+ K+++ + Sbjct: 299 ALKEMTEALWRRMDAIE-AFAADVAHEIKNPLTSL---RSAVETAARIEDPDKRARLMSI 354 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 + L L++DI D + +DA + + + L +L+ + + + +R +V Sbjct: 355 VLDDVGRLDRLISDISDASHIDAEMSRAETGPVALAAMLDTLAEIYRGTCEDRGLRFEVE 414 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 +G + RL+Q+ +++NA FS G + L A RD G V++ G IP Sbjct: 415 RPEGDALTVQGIESRLVQVLRNLIANAASFSPDGGLIRLAAHRDGGRIALVVEDQGPGIP 474 Query: 732 EDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++F RF S G++ G GLGLSI + HGG + + DEG IP Sbjct: 475 ANKLDAIFERFYSERPEGEKFGTHSGLGLSISRQIVEAHGGAIRAENRDEGGARFTVDIP 534 Query: 790 S 790 + Sbjct: 535 A 535 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 9/235 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ L + E A + K+ F+ ++S+E+R+P+ +IGFT LL + +++ Sbjct: 689 DLTERKKVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNT---NID 745 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Q Y+E I +S LL +++DILD + ++ G+M+L I L + L +A Sbjct: 746 SVQRDYIETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDAS 805 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF 719 + + + ++ + + D RL QI +L NA+ F+ KG + +A D + Sbjct: 806 RKGLSVSYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKGFVRLDVSALPVEDGHEI 865 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F V ++G I +D +F F R+ G GLGL+I + L GG + Sbjct: 866 QFRVTDSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGI 920 >gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] Length = 1207 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 14/253 (5%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNE----ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 + +T +VTD R E+ E+ A +A+ K+ F+ +S+E+R+P+ IIG T Sbjct: 641 GRVCITRTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMNAIIGMT 700 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 + LG+ + + + + I SS LL+L+NDILD++ +++G M L I + L Sbjct: 701 -AIAAQALGN-DEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDKIPTEEFL 758 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 N + ++ ++ + I D L ++ D +L Q+ IL NA+ F+ +G V Sbjct: 759 NGINSICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTREGGKVTF 818 Query: 711 KAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763 AA +++ F + + G + ED +F+ F S G GLGL+I +S Sbjct: 819 SAAVKRKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGLGLAISKS 878 Query: 764 FINLHGGHVSISS 776 ++L G +++ S Sbjct: 879 IVDLMDGKITVRS 891 >gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 881 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 103/421 (24%), Positives = 184/421 (43%), Gaps = 60/421 (14%) Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 DLE + + ID +SEG ++ R+ ++N + + E PG + I Sbjct: 269 DLEGRAAMASDRLVDAIDSISEGFLLYDNKERLIIANRRAKEVAGCGEGFFKPGLTVEQI 328 Query: 484 AATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTL-----ELLSD-SVLEYSIIPLP 534 SR ES LF + + D +ER T+ ELLSD S ++ Sbjct: 329 ----SRLGAESG---LFVSALGREDAWVEERLKCHRTISPPVEELLSDGSWVQVKTYRSG 381 Query: 535 NAQTMLTFVNVTDSVR-AE-----------------RALTEKNEALRKA-------DEIK 569 +T++ F +VT+ R AE + L EK LR+A DE+K Sbjct: 382 RGETVVVFTDVTERKRKAEVLATMNSDLEDLVRERTKVLVEKAMELRQANRRLMELDELK 441 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLK------------TSKLGSLNSKQSQYVEYISASS 617 ++F+ VS+ELR+PLT+++GF+ +++ T++ L + ++ I + Sbjct: 442 SAFLSSVSHELRTPLTSLLGFSKIIRRDFTRTFMHLADTAQAQRLGERIQSNLDIIGSEG 501 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-ENNIRIKVISDGK 676 L L+ND+LDL+ +++G ++ I L +N + + + + +R+ + Sbjct: 502 ERLTRLINDVLDLSRIESGQEDWRFTEIDLAGCVNRAVSAASGLLSPKPQVRLTIRRMDP 561 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + AD+ R+ Q+ +LSNA+ F+ G + D G V++ G I + Sbjct: 562 VPLVHADQDRIHQVLMNLLSNAVKFTDFGEVAVDLYLDDQGMARIRVEDTGRGIKARYLE 621 Query: 737 SVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F++F HRG + G GLGL+I + + G + S T +N +P Sbjct: 622 QIFDKF-HQVHRGDTLTEKPAGTGLGLAISRQIVEHYHGRIWAESKLGRGTVMNVALPPA 680 Query: 792 E 792 + Sbjct: 681 D 681 >gi|300920962|ref|ZP_07137352.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] gi|300412082|gb|EFJ95392.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|300118415|ref|ZP_07056161.1| sensor histidine kinase [Bacillus cereus SJ1] gi|298724200|gb|EFI64896.1| sensor histidine kinase [Bacillus cereus SJ1] Length = 263 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S + Sbjct: 36 SIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKRM 93 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 94 SSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDITI 151 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D L Q++S I +N++ FS+ T+ I S+ +NG + ++ +F+ Sbjct: 152 KGDENLLHQVWSNIFTNSIKFSNDDGTIEFFVEELESSVIISISDNGIGMEKEEMDRIFD 211 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 212 RFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 262 >gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 709 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 16/249 (6%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S+R E A + E+ R K F+ ++S+E+R+PL +IG L + + KQ+ Sbjct: 222 SIRLEEAKQQAEESARA----KARFLANMSHEMRTPLNAVIG----LSQKEYYQASDKQT 273 Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + ++ I++S LL L+N +LDL+ ++ G + L L+DL+N K +I +M + Sbjct: 274 KDFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCK-NIFVEMSKPE 332 Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFS 722 + + SD K ADR +LLQ+ + + NA+ F+S G I GD + + Sbjct: 333 VDVFFRSDLEKDFKLFADRTKLLQVVNNLSYNAVKFTSHGHVDICSDVTHVGDQCYLVMT 392 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + + G + ++ VFN F R+ G GLGLSI +S ++L G +S+ S E Sbjct: 393 ITDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVESELEK 452 Query: 781 VTTINCRIP 789 T +P Sbjct: 453 GTCFTVSMP 461 >gi|260449861|gb|ACX40283.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] Length = 899 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646 >gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 931 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L++V +A HE + + + I + F Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I R +++ G I E Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504 >gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis] Length = 1238 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +G+ Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|312890606|ref|ZP_07750141.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296905|gb|EFQ74039.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1472 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++ + ++ E+K +F ++S+ELR+PLT I+ + L + + L+ + +Y+E I Sbjct: 935 LRQRIQVEQELTELKLNFFTNISHELRTPLTLIMSPVEALLSKE--DLSERGRRYIEIIK 992 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ + V+ +LDL V G +LN S + L L+++V E NIR ++ D Sbjct: 993 RNTERMERFVSQLLDLRKVQTGNAQLNISRVSLVSLIDKVAGYFTEAFREKNIRFSIVPD 1052 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFI-FSVKNNGSSIPE 732 + AD +++ +F IL+NA+ +S + + + ++NG ++++ G + E Sbjct: 1053 NLVLEICADPEKMETVFYNILANALKYSPQDGVIEISVNFKENGSVCAIAIRDEGPGVDE 1112 Query: 733 DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F + GQ +G G+GLS+ F+ LHGG + +S Sbjct: 1113 TQLTDIFRLYYEGQIGGAGQLKGTGIGLSVSSEFVRLHGGKIYAENS 1159 >gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1759 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 9/218 (4%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ +S+ELR+PL I+G+ +L G N +QS + I S LLNL+NDILD Sbjct: 1291 SEFMARMSHELRTPLNGILGYAQILLGESRG--NERQSAMLNVIQQSGEYLLNLINDILD 1348 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRL 687 A ++AG +L+ S I L L + I K + + + +D G AD RL Sbjct: 1349 FAKIEAGKQELSLSDIQLPSFLRNLASIITIKAEQKALVFVCDIAADVPAG-IRADETRL 1407 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ +LSNA+ +S +G + + G F V+++G I ++F F A Sbjct: 1408 RQVLLNLLSNAIKYSERGQISLKVTVLEPGRLRFEVQDSGLGIDTGQLDTIFQAF-EQAG 1466 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 Q R G GLGL I + + + ++S DEG T Sbjct: 1467 DWQHRTGGTGLGLPISRELVRMMDSDIHVTSRVDEGST 1504 >gi|301327172|ref|ZP_07220438.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] gi|300846205|gb|EFK73965.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 873 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 19/247 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ RAE+A E + K+SF+ +S+E+R+P+ ++G + L +KL + Sbjct: 355 DVTERWRAEQAEAE--------NRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL---D 403 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Q V I S LL ++NDILDL+ ++AG ++ + L+ V+ I ++ Sbjct: 404 AEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPATLVESVRAIIEPEIR 463 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720 I +K+ D +L S D R+ Q+ + SNA+ F+ +GS ++L + N Sbjct: 464 GKGIELKIDIDPRLPPSLSGDAARIRQVLLNLASNAVKFTERGSIAIVLTCVKRNDSHAT 523 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + V + G I D S+F F RR G GLGL+I + GG ++++S Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583 Query: 777 SD-EGVT 782 + EG T Sbjct: 584 REGEGST 590 >gi|256378110|ref|YP_003101770.1| histidine kinase [Actinosynnema mirum DSM 43827] gi|255922413|gb|ACU37924.1| histidine kinase [Actinosynnema mirum DSM 43827] Length = 594 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 15/235 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E LRKA V ++ELR+PL+NI G+ L+ ++ G + + + + + + Sbjct: 368 EGLRKA------AVSDTAHELRTPLSNIRGW---LEAAEDG-VTDRDPELIALLLKEALA 417 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L ++V+D+ DLA DAG ++L S L +L+ ++ + T I + + L + Sbjct: 418 LQHIVDDLQDLAVADAGGLRLTVSPQPLTTVLDRLRAAHETTATRAGITLTTSAPDTL-T 476 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738 AD RL Q+ +++NA+ G V + A RD + + +V + G+ I PED+ V Sbjct: 477 AEADPVRLRQVLDNLVANAVRHVPPGGRVEVTAERDGDEAVITVTDTGTGITPEDL-PHV 535 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF RR G GLGL+IV + HGG VS +S + R+P+ Sbjct: 536 FDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVSATSEPGAGSIFTVRLPAP 590 >gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] Length = 949 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 14/264 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + T V++T AE L + E A+ K+ F+ ++S E+R+P+ I GF +LL+ Sbjct: 297 ICTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLE--- 353 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +L+S+Q +++ ++S +LL+++NDILDL+ ++A + + + L D + + + Sbjct: 354 LTNLSSEQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLL 413 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713 A K E + + V I + + D RL QI + ++ NA+ F+ KG I L+ Sbjct: 414 APKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSISMDYLEKD 473 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + F V++ G I + VF F R+ G GLGL I I + GG Sbjct: 474 HEIALVNFEVEDTGIGIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGD 533 Query: 772 VSISSS-DEGVT---TINCRIPSK 791 + + S EG T +N +I + Sbjct: 534 IRVESKLGEGSTFKFNVNLKIAKR 557 >gi|229059565|ref|ZP_04196946.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603] gi|228719769|gb|EEL71364.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603] Length = 334 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 150/292 (51%), Gaps = 16/292 (5%) Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 FA + + + +L+ +S+ LE I+ N + NV R ++L E Sbjct: 44 FAFMTKTMMKRLSEINKSLKEISNGNLEIHILISKNDEIGELAANVN---RMAKSLKESI 100 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E +K+ E+KN + ++S++LR+P+T++IG+ DLL ++L S + QYV + S Sbjct: 101 ENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNQLHSNREECEQYVSILKRKSYE 159 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N V+D+L+ ++ ++L+ S + + + ++ ++ + ++ + D K+ Sbjct: 160 LKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDADMSFCIKGD-KVLH 218 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D ++++F ++SN++ + G ++++ ++ + + +KN G IP + VF Sbjct: 219 VEMDVAVMVRLFENVISNSIMYGKDGKELLIQVSKRDMNVEIEIKNFGQCIPNENLPYVF 278 Query: 740 NRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 +F +RG++ G G+GL+I S LH G +++ S+D E V TI Sbjct: 279 EKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKETVFTI 326 >gi|227820615|ref|YP_002824585.1| sensor protein [Sinorhizobium fredii NGR234] gi|227339614|gb|ACP23832.1| sensor protein [Sinorhizobium fredii NGR234] Length = 755 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 6/251 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ +A R E +A + K+ + V++E+R+PL+ I+G + LL ++ L+ Sbjct: 217 DVTEEAQAVRRGEEARLRAEEASQAKSRLLATVTHEIRTPLSGILGMSHLLAQTQ---LS 273 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q Y+ + S L+ LV D++D +++ AG +L+ S L ++ V + ++ + H Sbjct: 274 AEQRNYLADMQQSGHALVQLVEDLIDFSSLSAGRFQLHPSEQELRLVIENVVEMLSHRAH 333 Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E I I V D + F D RL Q+ ++ NA+ F+ G V++ A G Sbjct: 334 EKGIEIGVAIDASVPPRFGFDAARLRQVLFNVIGNAVKFTEAGG-VLVTADYGEGHVRIR 392 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V ++G + D VF F QR +G GLGL+I + GG + SS Sbjct: 393 VDDSGPGMSADELARVFEEFEQAGDHAQRSKGTGLGLAISRRIMEAFGGSLIASSVTGEG 452 Query: 782 TTINCRIPSKE 792 + R P E Sbjct: 453 SRFEIRFPVDE 463 >gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 583 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 13/251 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTS 597 F+N+T+ L EK ++++ F ++S+ELR+PL I+G L + + Sbjct: 300 FINITERKIIRNELNEK----MHFEKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASE 355 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + S+ + + +S LL LVN+I+D+ +D+G +N +N L+ E+ S Sbjct: 356 NTSKYKKEYSKANKRMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLS 415 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + + ++I+ ++ D +++ +I +LSNA+ F+ G +++ Sbjct: 416 VEDYIENAGLQIEFKANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQN 475 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 SV++ G IP++ SVF RF S +HR + G G+GLS+V I H G V++ Sbjct: 476 RIFMSVRDTGIGIPQEKINSVFERFKQVGSYSHR-KNEGSGIGLSLVRLLIEAHKGKVTV 534 Query: 775 SSS-DEGVTTI 784 S +EG I Sbjct: 535 RSKLNEGTEFI 545 >gi|300925320|ref|ZP_07141210.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] gi|300418542|gb|EFK01853.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] Length = 904 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|294643491|ref|ZP_06721301.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292641170|gb|EFF59378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 479 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 251 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 310 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 311 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 370 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + V++ A +D V++ G I KS+F+ Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 430 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465 >gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] Length = 891 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 257 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 312 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + +++ Sbjct: 313 CIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQV 372 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A + + + + G I E Sbjct: 373 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVATQAKTPQQVTLVVEIHDTGIGISESQQA 432 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +F F RR G GLGL I E + GG +S S D G T Sbjct: 433 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGST 481 >gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 603 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 161/334 (48%), Gaps = 23/334 (6%) Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513 GR L +P F +L L T + +R +++SD + S++++ Sbjct: 265 GRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQPRSYEEKLTF 324 Query: 514 LQGTLEL-LSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADE 567 G+ + LS+ PL + L + ++T+ R ++ L EA Sbjct: 325 HDGSQKYYLSEK------FPLRDEDGHLIAIAGVSTDITELHRYQQELERAKEAAEAGTR 378 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ ++S+E+R+P+ +I+G ++LL ++L + Q Q+V ++ +S+ LLNL+NDI Sbjct: 379 AKSEFLANMSHEIRTPMNSIMGMSELLLDTEL---SPDQRQFVTILTRASSSLLNLINDI 435 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LDL+ +++G+M + + + + + + + E + +K+ D ++ + D R Sbjct: 436 LDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPEKILGDATR 495 Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVS 744 Q+ ++ N + F++ G V LK NG ++ VK+ G + + + +F RF Sbjct: 496 FQQVLINLIGNGLKFTTHGEVRVQLKV---NGHQLWVGVKDTGIGMAPEQMQGLFTRFSQ 552 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGLSI + + GG + ++S Sbjct: 553 GDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTS 586 >gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] Length = 909 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 13/227 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL ++GFT +LKT L + Q Y++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 +++ND+LD + ++AG + L L L+E +A H+ + + V+ D + + Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI ++ NA+ F+ KG + R + V+++G I E Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQT 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780 +F F RR G GLGL I + + GG ++ SS D+G Sbjct: 463 QMFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQG 509 >gi|298247995|ref|ZP_06971800.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550654|gb|EFH84520.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 853 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 9/237 (3%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616 N A ++ ++ K+ F+ S+ELR+PLT + T LL + +K G S + + + Sbjct: 620 NSARKELEQRKDDFISMASHELRNPLTALKLHTTLLHRQLAKQGLQGSAPA--LSSMETQ 677 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LV ++LD++ + AG ++ + T+ L+ LL E+ ++ + I ++ Sbjct: 678 INKVTRLVEELLDVSKIQAGRLEYVWETVDLDALLREITDTVQQTHPSHRI---LVRGAV 734 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 S +ADR RL Q+F+ +LSNA+ +S V + + V+++G IP + Sbjct: 735 QTSLMADRDRLGQVFTNLLSNAVKYSPSAEAVEMDLSTSAETVTIRVQDHGLGIPREKRD 794 Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F+RF A Q+ G+G+GL IV + +GG +++ S +T +P K Sbjct: 795 KIFDRFYRVADPRQKAIPGLGMGLYIVAEIVKHYGGTITVESEPGKGSTFQVMLPRK 851 >gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 681 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 10/257 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + M ++T+ R E+ + E ++ +E+K FV S+E R+PL I+ +L++ Sbjct: 403 EVMAIVRDITERKRVEQDIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSAELIEH 462 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLN 652 K+ +++ I + + L+ND+L L +AG ++ + I L L+ Sbjct: 463 YAHKLDEKKKMTHLQRIQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFCRQLVE 522 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 EV+ + +T I + + + D+Q L I + +L+NA+ +S + S V Sbjct: 523 EVQLTTSTHT------IVFCAHNQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFDL 576 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ IF +++ G IP + +FN F ++ G G GLGLSIV+ ++LHGG + Sbjct: 577 ICESQKVIFRIQDQGIGIPANEQPELFNSFFRASNVGSISGTGLGLSIVKKAVDLHGGQI 636 Query: 773 SISSSDEGVTTINCRIP 789 + S TT ++P Sbjct: 637 EVESRLGEGTTFTVKLP 653 >gi|108758513|ref|YP_628610.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108462393|gb|ABF87578.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 698 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 11/259 (4%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLL 594 A +L V VTDSV A +E + ++ + + + VS++LR+PL I + + +L Sbjct: 425 AAVILFAVEVTDSVLARHKESELAQQMKARADFERQLIGIVSHDLRNPLGAISLAVSMML 484 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNE 653 + G L+ +Q++ + I +S+ ++ D+LD G + + + L++++ Sbjct: 485 QR---GLLDERQARQAQRIRSSADRATRMIRDLLDFTRARQGTGLPVYPQPMDLHEVVRT 541 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 V + + ++ + DG +G++ D RL Q+ ++ NA+ +S G+ V + + Sbjct: 542 VLDEVHAGWPDRHLETERTGDG-VGTW--DPDRLAQLIGNLVGNALQYSPPGTPVRVTSR 598 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGG 770 D+ + V N G +IP + +F R + RR +GLGL IV S + HGG Sbjct: 599 GDDDGVVLEVHNLGPAIPLERQPRIFEPLERATVRPEDQGRRSIGLGLYIVRSIVLAHGG 658 Query: 771 HVSISSSDEGVTTINCRIP 789 V S +E TT R+P Sbjct: 659 TVEARSQEETGTTFTVRLP 677 >gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 758 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 11/239 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +R+ E+++A+ KA++ K+ F+ ++S+ELR+P+ NI+G+T LL + ++ +Q +Y+ Sbjct: 220 QRSQVERSQAV-KANQSKSVFIANISHELRTPMNNILGYTGLLLDTP---VSQEQREYLL 275 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS LL L ND+LDL+ ++AG +++ + L LL ++T + ++ Sbjct: 276 AVQQSSESLLTLFNDMLDLSKLEAGTTQVDLAPTELRALLQAAVARVSTVSEAKGLNVET 335 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726 D L + V DR LL++ +LS A+ + KG V+ + D F+V+++ Sbjct: 336 FVDAGLPTRVLTDRNILLRVLESLLSVAITVTVKGQVVLHVHPVAFDEDRVRIRFTVEDS 395 Query: 727 GSSI-PEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 I P ++ + N F + +G G GL L++ + F+ L GG I S + TT Sbjct: 396 SPGISPNEIDTLLSNTFEAPVSQGLNEVGTGLRLALCKQFVELMGGSFGIESEEGKGTT 454 >gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] Length = 1193 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 17/239 (7%) Query: 549 VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +RA+ L + K E +A + K F+ + +E+R+P+T ++G ++LL + L + +Q Sbjct: 794 MRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 850 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y I ++ LL LVND LDLA ++AG + L+Y L L+ +V + + + + Sbjct: 851 GYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQKQL 910 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSV 723 + + D + D R+ QI +L NA+ F+ +GS + + G V Sbjct: 911 VFECELEDALPPALHGDASRVQQILLNLLFNAVKFTERGSVSLRVSVLPQGHKQGIRMEV 970 Query: 724 KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G + + +F RF ++ A G G GLGL+I GG V++SS Sbjct: 971 RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGEVTVSS 1026 >gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587] gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587] Length = 984 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|167647655|ref|YP_001685318.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167350085|gb|ABZ72820.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 602 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 14/232 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K F++ +S+E+R+PL ++G ++ +L+++Q + I S LL+++ Sbjct: 219 ANRVKTEFLETMSHEIRTPLNGVLGMAQAMERD---TLSARQRTRLAMIQDSGATLLDVI 275 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 N +LD++ ++AG M++ + L+ L + ++Q H+ + + ++ G D Sbjct: 276 NAVLDISRIEAGKMEIVRAPFRLDALTDTLRQLYGGLAHDKGLDFSLEVATETAGWRDGD 335 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740 RL Q+ S ++SNA+ F+ G + R +GD +V + G +PE +F Sbjct: 336 VARLRQVLSNLISNAIKFTDAGGVTV----RIDGDVRGVNCTVSDTGVGVPEGRRAQIFE 391 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRIP 789 +FV RR G GLGL+I + L GG + I +S+ G +IP Sbjct: 392 KFVQVDSSSTRRTGGSGLGLAICRELVTLMGGRIDFIDTSEAGGACFTFQIP 443 >gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 878 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 122/501 (24%), Positives = 215/501 (42%), Gaps = 83/501 (16%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 IL L V IAI Q+R ++ N + L +I+ + F R + Sbjct: 270 ILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWF-----------FER-------HVP 311 Query: 371 WKTWKENIFSVYKSSET-----HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV-- 423 W + EN+ S + H+ G+TL VI +S P I E L ++V Sbjct: 312 WDMFYENVQSDDPERQPRIEFEHEVRMRALEGRTLDVIKSSIP---VILQGETLILEVFM 368 Query: 424 DLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477 D+ + ++ E + ++EGVA+ G + N + + + + L G Sbjct: 369 DVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLCRILGAKAHDLL-G 427 Query: 478 THIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQGT---------LELLSDSVL 526 + WDLF I T ++LQ LE D L Sbjct: 428 RKV----------------WDLFPDGILGTQLAQGLRALQENPRTRLREIQLESFRDMAL 471 Query: 527 EYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 + P+ + +++ + VT V A R + EA A + K+ F+ ++S+E+R+ Sbjct: 472 VVRMQPVLGEEAFGGMIVSVIEVTAIVDARR----RAEA---ASQAKSMFLANMSHEIRT 524 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 P+ +I+G +LL ++L +++Q+ V+ I + LL ++NDILD + ++AG++++ Sbjct: 525 PMNSILGHGELLARTRL---DTEQADCVQGIRVCAESLLVIINDILDFSKIEAGMLRIAP 581 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702 + L LL V+ ++ + + + +++++ G D RL QI ++ NA+ F+ Sbjct: 582 EDVDLGGLLARVRTMLSEQAQKKGLDLQLVTAGLPQVVSTDAGRLTQILVNLVGNAIKFT 641 Query: 703 SKGST--VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 G + A G FSV++ G I D K +F F R G GL Sbjct: 642 EHGGVELSVRGEAHAGGKAALCFSVRDTGIGISADRQKGIFVSFEQADGSLTREYGGTGL 701 Query: 757 GLSIVESFINLHGGH-VSISS 776 GL+I S + L GG +S+ S Sbjct: 702 GLTIANSLVRLLGGSGISVKS 722 >gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 931 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L++V +A HE + + + I + F Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I R +++ G I E Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVQLEVQIRDTGIGIAELQQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504 >gi|255283851|ref|ZP_05348406.1| sensor protein [Bryantella formatexigens DSM 14469] gi|255265572|gb|EET58777.1| sensor protein [Bryantella formatexigens DSM 14469] Length = 416 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 6/220 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ S+ELRSPLT ++ +T+ +Q ++ + I + + L+ D+L LA Sbjct: 197 FIASASHELRSPLTVMLSALSAARTAS----PDEQPRFFDSIESEGQRMARLIEDMLLLA 252 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690 + D + L+ LL E + E + +++ + + L D++R+ Q Sbjct: 253 SSDNKTWSIRPGMTELDTLLLETYEKYEPTAREKKLHLQIHLPEDALAPCFCDKERIGQT 312 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRG 749 S ++ NA ++ G TV L A + F SV +NG IP+D + +F+RF ++ R Sbjct: 313 LSILIDNAFSYTPPGGTVCLSAGTADKYFTISVADNGPGIPDDQKEKIFDRFYRADDARS 372 Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R GLGL I + + LH G ++++ + EG +P Sbjct: 373 NRGHFGLGLCIAKEIVLLHKGTLTVTDAPEGGAVFTILLP 412 >gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 1131 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 7/256 (2%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N QT L + R + AL + +A++ K+ ++ +S+ELR+PL +I+G+ +L Sbjct: 646 NRQTQLLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAISHELRTPLNSILGYAQIL 705 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + + + Q V I S LL+++ LD+A ++ G + L+ + +L+ ++ Sbjct: 706 AADE--DIPPNRLQAVSVIRKSGDHLLSVIEGTLDIARIEGGKLTLDVKAMDFPELMQQI 763 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712 + + G+L + V AD +RL QI ++ NA+ F+ +G ++ Sbjct: 764 VGMFELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINVIGNAVKFTVRGGVSFKVEC 823 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 RD IF +++ G IP + +F F + Q G G+GL+I +L GG + Sbjct: 824 RRDMA--IFEIRDTGPGIPAADLERIFEPF-TRGSTVQAGGSGVGLTIARMLTDLMGGEM 880 Query: 773 SISSSDEGVTTINCRI 788 +SS+ T R+ Sbjct: 881 QVSSTAGEGTLFRIRL 896 >gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 938 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 4/231 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K+ F+ VS+ELR+PL I+GFT L+ + L + Q+Q + + + LLNL Sbjct: 561 RASRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDHPLAAPQAQRLASVQRAGNRLLNL 620 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +ND+L+++ +++ + + + L+ L+ + + +I I+ L +V+ Sbjct: 621 INDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQSLARGRSITIEPTPPSGL--WVSG 678 Query: 684 RQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 +R L Q+ +LSNA+ +S + S V+L R +G +V++ G + + +F F Sbjct: 679 DERALEQVLVNLLSNAIKYSGEQSPVVLNLQRSDGTVKIAVRDRGVGLTAEQQARLFQPF 738 Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 A R + G GLGL I GG + + S +T ++P E Sbjct: 739 DRLGAERRRIEGSGLGLVIARQLAEAMGGRIDVVSVPGAGSTFTLQLPEAE 789 >gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 732 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 26/311 (8%) Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555 G+ L I + D S + T+ LL L S++ L A ++ + AE+AL Sbjct: 281 GYPLAVNITITEDLYLSSWRSTVRLLGGIGL-VSLLALCGAFILMAIILKRREQDAEQAL 339 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T K EA +A+ K+SF+ +S+E+R+P+ I+G +L+ + L ++ Q Y + Sbjct: 340 TLKREA-EEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDTPL---DASQRTYAGNVYN 395 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-------IR 668 + L+ ++N+ILD + V++G M+++ +T L+ EV +H N IR Sbjct: 396 GAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEV-----IGLHRNGATAKQLQIR 450 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-----FS 722 ++ L AD R+ Q+ +++NA+ F+ G+ TV A D D FS Sbjct: 451 TEIAPAAAL-LVSADASRIRQVLGNLINNAIKFTPAGAITVRFVALPDPADATQVQLEFS 509 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V ++G I + + +F FV + R+ G GLGL+I + + L G + S Sbjct: 510 VADSGIGISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDIGA 569 Query: 781 VTTINCRIPSK 791 T + RIP++ Sbjct: 570 GTRFSFRIPAR 580 >gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 921 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL + SL+ Q Y E I + Sbjct: 540 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 596 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 597 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 655 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 656 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 715 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGH+ + S Sbjct: 716 KARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVIS 760 >gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 977 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 6/241 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 L + E A++ K++F+ ++S+ELR+PL IIG+++++ + ++ I Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + LL L+N ILDL+ ++AG M+L + L +L+N VK I + +N ++ V Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPE 732 +G AD +L Q +LSNA F+ +G+ A GD +F V ++G + Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQGTDS--AAGCCQGDQVVFKVVDSGIGMSP 641 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +F F R+ G GLGLSI FI + GG +++ S +T +P Sbjct: 642 EQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701 Query: 791 K 791 + Sbjct: 702 Q 702 >gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1194 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KT++ ++ Q Y E I + Sbjct: 813 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DATQRSYTESIRRA 868 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L++ + L+ EV+ +A E +R + G Sbjct: 869 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 927 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 928 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 987 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + + R G GLGL+I + GGH+ + S Sbjct: 988 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033 >gi|28897261|ref|NP_796866.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus RIMD 2210633] gi|260876228|ref|ZP_05888583.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AN-5034] gi|28805470|dbj|BAC58750.1| sensor histidine kinase FexB [Vibrio parahaemolyticus RIMD 2210633] gi|308092976|gb|EFO42671.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AN-5034] Length = 783 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|302340463|ref|YP_003805669.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637648|gb|ADK83075.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 700 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 168/375 (44%), Gaps = 41/375 (10%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN---IAATCSRYYNE 493 G + + +GV + G I+ +N NR+ IR I R + Sbjct: 237 GYIMSKMLDGVLLVDAAGTIRDAN-----------NRILEMLRIRRRALIGQRLIRLFPT 285 Query: 494 SDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML--------TFV 543 +D +D +T FD ++ TLE +L LE IP+ A ++L V Sbjct: 286 TDSFD----PMTEFDIDKLDSTATLEREVLCGFSLE-DAIPVLAAFSLLLDSAGEVGGAV 340 Query: 544 NVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V +R R L T K EA KAD K F+ H+S+++++PL +IIG+ LL + L Sbjct: 341 VVVHDLRFRRELETAKLEA-EKADRAKARFLAHMSHDIKTPLNSIIGYAQLLVSDD--EL 397 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +S+ + I S LL L++DILD ++AG M + +LL E+ Sbjct: 398 SSRNRRLSISICESGNHLLELLSDILDATQMEAGRMVIERKGFSFRNLLREIAIGYRLTA 457 Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + + +V L F + D++R+LQI + ILSNA+ ++ G V + + + Sbjct: 458 KRHGLDFRVYLGPNLPMFLLGDKKRILQILNNILSNAVKYTPVGGRVECEVGTSSDETSA 517 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSI 774 V + G I E++ KS+F F A + G+ G GLGL+I + GG + Sbjct: 518 ARVLRIIVSDTGPGISEELQKSIFEPFARGAEYAGRVEGQGLGLTISRELTRMMGGILEY 577 Query: 775 SSSDEGVTTINCRIP 789 ++ G ++ IP Sbjct: 578 RDAEIGGSSFIFTIP 592 >gi|167846088|ref|ZP_02471596.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei B7210] Length = 349 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|167719960|ref|ZP_02403196.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 327 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T + RI Sbjct: 303 TASARI 308 >gi|26986877|ref|NP_742302.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24981479|gb|AAN65766.1|AE016202_9 sensory box histidine kinase [Pseudomonas putida KT2440] Length = 593 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 13/266 (4%) Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L YS+ P+ + Q +L V V V +RA + +++ FV S+ELR+P Sbjct: 339 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 388 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T + LL+ ++++ +E I L L+ND+L+ + +G+ KL + Sbjct: 389 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 448 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++DLL+ + A + I + D L AD +L ++ +L NA+ ++ Sbjct: 449 PCAIDDLLDHAQSRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 508 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 G + L A R I SV++NG I +F FV + + G GLGL++ + Sbjct: 509 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 566 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + LHGG + + S T +P Sbjct: 567 IVQLHGGRMGVFSRPGQGTQFYMALP 592 >gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822] gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis] Length = 1238 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ R L + E+ A+ K +F+ +S+E+R+P+ IIG +L Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +QS V Y SA S LL L+ DILD+A ++AG L L L + Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGL 810 Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + I + + +D + + D R+ Q+ S ++ NA+ F+++G V+ AR +G+ Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G I E + +F F +A G G GLGLSI + L GG + + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 775 SSSDEGVTTINC 786 S+ TT++ Sbjct: 931 RSAPGVGTTVSV 942 >gi|323704299|ref|ZP_08115878.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536365|gb|EGB26137.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 546 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 10/217 (4%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 E + FV ++S+EL+SPLT I+GF +LK K + YI + + L LV D Sbjct: 333 EKQKKFVSNISHELKSPLTAILGFIQILKEEK-----EYNQVILNYIESETIKLKELVLD 387 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685 IL+++ + + +KL TI L+ LL ++ ++I K + NI I I DG S +AD Sbjct: 388 ILEVSKLQSYELKLQKKTINLSWLLLKICENINLKALKFNISINTNIQDG--ISLIADED 445 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 ++ Q +L NA+ +S+ + + + ++ N + VK+NG IPE+ + +F+RF Sbjct: 446 KISQAIVNLLDNAIKYSNPHNQIDVSLYKNFNREISIKVKDNGIGIPENEIRHIFDRFYR 505 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780 + G GLGL+IV+ I HGG + ++S D+G Sbjct: 506 AKNALSIGGNGLGLTIVKEIIEKHGGRIEVASKIDKG 542 >gi|312622322|ref|YP_004023935.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] gi|312202789|gb|ADQ46116.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kronotskyensis 2002] Length = 467 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + LN S + + Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L ADR + ++ +L NA+ ++ G + + Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 415 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 88/343 (25%), Positives = 147/343 (42%), Gaps = 44/343 (12%) Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-------Q 537 ATC+ G I+T DD + + ++ + PL NA + Sbjct: 70 ATCAALRRLPGGEHTPILIMTGLDD----FESITKAYDAGATDFIVKPL-NAMLLTHRIR 124 Query: 538 TMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLK 595 M+ V +R +A LT+ +A + +K+ F+ +S+E+R+P+ ++G TD LL Sbjct: 125 YMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHEIRTPMNGVLGMTDWLLD 184 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T L ++Q + I +S LL ++NDILD + +++G + L L+ L+ V Sbjct: 185 T----PLTAEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDFDLSTFLDRVM 240 Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---- 710 + + + I++ GS D RL QI S +L+NA+ FS GS +L Sbjct: 241 ALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEHGSVSVLVELD 300 Query: 711 -KAARDNGDFI------------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 + A +F FSV +NG I +F FV R Sbjct: 301 QRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSAFSKLFQPFVQADGSTTR 360 Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + G GLGL+I + + L GGH+ S + +P ++ Sbjct: 361 KYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQQ 403 >gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492] gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492] gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 508 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E +A+ +K++F+ ++S+E+R+PL I+GF+ +L + + ++K+ Y+ I Sbjct: 271 LLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSIL-SDYIQDEDTKE--YIHIIE 327 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ +LL L+NDILDL+ ++AGI++ + +N L+E+ Q++A + + I+++ Sbjct: 328 ENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEM-QTMAKLKLPSEVSIRLLPG 386 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 +R+ Q+ + LSNA+ + +G I F V++ G IP + Sbjct: 387 ADYCIIHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEK 446 Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K VF RFV N+ ++G GLGLSI G V +SS Sbjct: 447 QKDVFERFVKLNSF---KQGTGLGLSICTMIAEKMNGKVGVSS 486 >gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1] gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1] Length = 994 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 11/226 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EA+ +A IK+ F+ ++S+E+R+PL +IGFT LL S + + Q Y+E I SS Sbjct: 302 RKEAV-EASRIKSEFLANISHEIRTPLNAVIGFTTLLLKSDIKTF---QYDYLETILKSS 357 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGK 676 LL ++ND+LD + ++AG + L + +L+ +V +A +E ++ +I + Sbjct: 358 EGLLAIINDVLDFSKIEAGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISLYYSDV 417 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPE 732 + D RL QI + +++NA+ F+S+G V+ D+ + + SV + G + + Sbjct: 418 PQQIIGDPLRLKQILTNLVNNAIKFTSQGEVVVRVMLEDSRNHLCVIKVSVTDTGIGLTK 477 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + ++F+ F + RR G GLGL I + + G + I S Sbjct: 478 EQQSALFHAFQQADNSAARRHSGTGLGLVISKHLVEQMRGQIGIES 523 >gi|300694174|ref|YP_003750147.1| sensory histidine kinase in two-component regulatory system with baer [Ralstonia solanacearum PSI07] gi|299076211|emb|CBJ35524.1| sensory histidine kinase in two-component regulatory system with BaeR [Ralstonia solanacearum PSI07] Length = 520 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 17/240 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615 E L +++ +S+ELR+PL + G D ++ SL S Q++ Sbjct: 277 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 330 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672 + L L++D+ +L+ D G + + +I L D + Q +++ E +I +++ Sbjct: 331 --STLSKLIDDLYELSLADVGALAFHMQSIDLADTVCSAAQGFTSRLMEKSIALQLDLPT 388 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + D QRL Q+ +L N + ++ G T+ ++ RD + V+++ +PE Sbjct: 389 GPSRDATIQGDAQRLRQLMQNLLENTLRYTDAGGTLRIRVHRDGAWWCLDVQDSAPGVPE 448 Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 M VF+R F ++ R + + G GLGLS+ ++ + HGG + S G I R+P+ Sbjct: 449 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQTHGGTIEARPSPLGGLWIAIRLPA 508 >gi|254421982|ref|ZP_05035700.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189471|gb|EDX84435.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 901 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 50/322 (15%) Query: 507 FDDERKSLQGTLELLSDSVLE--YSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEAL 562 F + K+++ + LL L Y + NA + F ++T+ + R L +A Sbjct: 400 FTNGTKTIEDEVPLLDGRTLRRIYGPVQQDNATFAYLYMFEDITERKQVIRELAHATKAA 459 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A++ K+ F+ ++S+ELRSPL +I+GFT +L+ S + N +Q++ ++ I S LL Sbjct: 460 EAANQAKSEFLANMSHELRSPLNSILGFTHILRES---NPNLEQAENLDIIYRSGEHLLA 516 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681 L+ND+LD++ +++G ++LN + L LL+E++Q ++ + +R + KL + V Sbjct: 517 LINDVLDISKIESGRVELNNTQFDLYCLLDELQQMFSSAIDRKGLRFLMRRSPKLPRTVV 576 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------------------- 718 +D +L QI +LSNA+ F++ G T+ L N D Sbjct: 577 SDHLKLRQILINLLSNALKFTAVG-TITLSVHSQNQDGQNQHSQNQYGQNQLNHACESLE 635 Query: 719 ----------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIV 761 FS+ + G I +F FV + + G GLGL+I Sbjct: 636 KQDNPQTTTTKPPSTLLTFSISDTGPGIAAADQAHLFEAFVQTQSGLDSPEGTGLGLAIS 695 Query: 762 ESFINLHGGHVSISSS-DEGVT 782 +I L GG++++ S EG T Sbjct: 696 HEYIQLLGGNLTVDSQLGEGAT 717 >gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM 17244] gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM 17244] Length = 1210 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 130/252 (51%), Gaps = 17/252 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592 L ++TD ++ E + +N AL KA +E K+ F+ +S+++R+P+ I+G T Sbjct: 665 LIIRDITDQIKQEELIEAQNRALEKALKKANAANEAKSLFLSSMSHDIRTPMNGIVGMTT 724 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 + K S K ++ I SS LL+L+NDILD++ +++G + L + ++DL + Sbjct: 725 VAKESIKNEDRIKDC--LDKIDVSSKHLLSLINDILDMSRIESGNLILKEENVNISDLFH 782 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---- 708 + I ++ E N I+ D + + + D RL Q+F ILSNA+ F+ + Sbjct: 783 DTLTIILSQAKEKNQNIRFDIDVEHENIIVDSLRLQQVFINILSNAIKFTEYNGNIDINI 842 Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 + + + D+ F ++G I ++ ++F F + G+ +G GLG++I + Sbjct: 843 YELPQTKQGYADYKFEFIDDGIGISKEFIDNIFEPFERENKEMSGKIQGTGLGMTITKRI 902 Query: 765 INLHGGHVSISS 776 +++ GG + + S Sbjct: 903 LDMMGGKILVRS 914 >gi|228952886|ref|ZP_04114954.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806796|gb|EEM53347.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 385 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 274 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384 >gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01] gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01] Length = 641 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q +V I++SS L+ ++ Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIINSSSNSLMVII 296 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 +DILD + ++AG ++L +T L DLL+EV + K + +++ D +L V D Sbjct: 297 DDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL--KAAR--DNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ S +LSNA+ F+ +G ++ + +R D F V ++G I ++ ++VF Sbjct: 357 MGRLKQVLSNLLSNAVKFTERGHVKLMVSQVSREADVAGVHFRVVDSGIGIAKENQQTVF 416 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F R+ G GLGL+I S + + GG + ++S Sbjct: 417 EKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTS 455 >gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha] Length = 848 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 12/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL +A IK+ F+ ++S+E+R+PL I+GFT LL+ S+ L+ +Q Y+ I S+ Sbjct: 174 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTIEKSA 229 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675 L ++N+I D + ++AG + L+ L DLL + A H + + V D Sbjct: 230 DNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSLVYRDT 289 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPE 732 L + V D RL QI + ++SNA+ F+ +G++ + D + SV++ G + Sbjct: 290 PL-ALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGIGLSN 348 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F N+ Q G GLGL I + I GG + + S+ Sbjct: 349 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 395 >gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 1152 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 5/251 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + ++ RA ++ E L + D K +F +VS+E R+PLT ++G + L + Sbjct: 327 IASAINNARAYEEEKQRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLGPVEDLLMRRSDE 386 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ + + + + LL LVN +LD + ++AG M+ Y L E+ + Sbjct: 387 LSAAAKEDLAVVGRNGLRLLRLVNSLLDFSRIEAGRMQATYEPTDLARFTEELASLFRSA 446 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 + + V D DR +I +LSNA F+ G + L+ D + Sbjct: 447 CERAGLTLTVDCDTLPEPAFVDRAMWEKIVLNLLSNAFKFTQAGRIAVSLRTIGDKAE-- 504 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G+ IP D +F RF V H G G+GL++ I LHGG + S+ Sbjct: 505 LRVADTGTGIPADELPRIFERFHRVQGTHGRTHEGAGIGLALTLELIKLHGGTIRADSTP 564 Query: 779 EGVTTINCRIP 789 TT IP Sbjct: 565 GAGTTFIVEIP 575 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +ALR+AD K+ F+ +++ELR PL I +L S+ + ++ +Q + I Sbjct: 769 ALRHRGKALREADRRKDEFLNILAHELRGPLATISNTAHILGQSRTDTELARDAQ--KRI 826 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVI 672 L+ LV+D+LD + G ++L+ + DL ++ +I T + + +V Sbjct: 827 ERQLRHLVRLVDDLLDTNRITQGKLQLHIERV---DLQAAIRDAIETCRPLAEELEREVT 883 Query: 673 SDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D S AD RL Q+ +LSNA ++ G V L + + VK++G I Sbjct: 884 LDVPAESIWLDADPVRLAQVIGNLLSNAYKYTEHGGHVWLSVEPRGDEVLLRVKDDGVGI 943 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 P S+F+ F V ++ R G+G+GL++V+ +++HGG V Sbjct: 944 PAAALPSIFDLFMQVRSSLNRARGGLGIGLALVKRLVDMHGGQV 987 >gi|73749265|ref|YP_308504.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|289433228|ref|YP_003463101.1| histidine kinase [Dehalococcoides sp. GT] gi|73660981|emb|CAI83588.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|288946948|gb|ADC74645.1| histidine kinase [Dehalococcoides sp. GT] Length = 581 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 AL K + + F + +ELR+PLT II +D L + ++++K V I+ ++ L Sbjct: 355 ALEKEAQKRIYFTWALVHELRTPLTPIILASDALHSV---AVDNKLKSLVNNINNGASEL 411 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLG 678 ++++LDLA + GI+K + + N ++ E+ + ++HE +K+ + L Sbjct: 412 NTRISELLDLARGEVGILKFVHESFDFNAVIREISEFFMPEIRLHEQKFSVKL--ESGLP 469 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 DR R+ Q+ S +L NA+ +S GS + ++ A +F+F++ ++G IPED +++ Sbjct: 470 EVSGDRGRIKQVVSNLLENAIKYSGNGSEINIQTALAGQEFLFTISDSGPGIPEDKLENI 529 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + + G+GLGL++ + I H G + +SS + + +P Sbjct: 530 FDPYRC-GNELHPSGLGLGLALSKMIIEKHSGKIWVSSVKNSGCSFSFTLP 579 >gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] Length = 678 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 2/230 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L D K+ FV VS+ELR+PLT+I G+ ++L LG L+ Q + + I ++ L Sbjct: 444 LEALDRQKDEFVGTVSHELRTPLTSIAGYLEMLADGDLGELSPAQLKAMAVIERNTFRLR 503 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ D+L L ++ + ++ + L L+ +V Q + + +N + + V + Sbjct: 504 GLIEDVLVLNRIETRGLDPSFVPVDLAQLVRDVVQDLQPQARDNEVTLDVSDLPQTCVVE 563 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D +L + + ++ NA+ FS G V++ + +++G IP + +F+R Sbjct: 564 GDALQLGRALTNVVGNAVKFSKSGGLVVVSVVVELDAVRIRCRDSGIGIPAADMEQMFSR 623 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F SNA G G GLGL+IV++ I H G + + S + TT++ +P Sbjct: 624 FFRASNATSGAIPGTGLGLAIVKAIIEAHHGELELHSVEGEGTTVSLTLP 673 >gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC 11218] Length = 807 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + A+ K+ F+ ++S+E+R+P+ +I+G + LL TS +L+ +Q ++ I Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSEEQRNHLITI 513 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL+L+NDILD++ +DAG + + L L+ +V K ++ +++ + Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSS 729 D L + D R+ QI +SNA+ F+ +G I + +F SV++NG Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + D VF F R+ G GLGL+I + +L GG V + S Sbjct: 634 LSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVES 682 >gi|312793632|ref|YP_004026555.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180772|gb|ADQ40942.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 467 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFIFNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + LN S + + Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L ADR + ++ +L NA+ ++ G + + Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 884 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 14/234 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL I+G ++L+ + L N++Q++Y+ IS++ L L+ DIL Sbjct: 363 KSQFLSNMSHEIRTPLNGILGMAEVLERTPL---NNEQARYLRAISSAGQALHGLLGDIL 419 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQR 686 DLA ++AG + L L LL ++ ++ ++ + +L D R Sbjct: 420 DLAKIEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTADFVGVARL-CLRGDPTR 478 Query: 687 LLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740 L Q+ S +L+NA+ F+ +G V+ A+R + FSV++ G I + +F Sbjct: 479 LRQLLSNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFSVRDTGIGIAPEAAARLFQ 538 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 FV RR G GLGL I + + L GG +S+ S+ +T +P E Sbjct: 539 PFVQADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQGSTFTAELPFAE 592 >gi|302529717|ref|ZP_07282059.1| predicted protein [Streptomyces sp. AA4] gi|302438612|gb|EFL10428.1| predicted protein [Streptomyces sp. AA4] Length = 581 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 12/245 (4%) Query: 553 RALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R T NE R +E++N+ V V++ELR+PL+ I G+ L+ ++ G ++ Sbjct: 343 RLATAFNEMARAREELENARKAMVSDVAHELRTPLSTIRGW---LEAAQDG-ISQLDDDL 398 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + + L ++V+D+ DLA DAG ++++ + N LL + + A + + + Sbjct: 399 VASLLEEAVHLQHIVDDLQDLALADAGALRVHPEPVDANTLLTHLAAAHAPRAEAAGVSL 458 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V + + AD RL Q ++SNA+ + G +V + A+R + + F V + G+ Sbjct: 459 SV-PPMENPAITADPVRLRQALDNLVSNAIRHTPPGGSVTVTASRRDNEASFEVADTGTG 517 Query: 730 I-PEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I PED+ + VF+RF ++ R + G GLGL+IV HGG V+ +S+ TT Sbjct: 518 IAPEDLPR-VFDRFWRADPSRSRVSGGSGLGLAIVRKLAEAHGGAVTAASTPGKGTTFTL 576 Query: 787 RIPSK 791 R P++ Sbjct: 577 RFPAQ 581 >gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 865 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 5/244 (2%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +A+ + ++T+ R L E A A + K +F+ ++S+ELR+PL I+G+ +L Sbjct: 379 DAKIVCMLEDITERKRLIAELIEAKGAAESATKAKTAFLANMSHELRTPLNAILGYAQML 438 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 +L +Q + + S L L+ D+LD++ +++ M+L S L L+ + Sbjct: 439 GDDD--NLTEQQRDALTTMRTSGEHLATLLEDLLDISKIESDRMELAPSEFELTRFLDGL 496 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + G L V AD +RL Q+ +L NA+ F+ +GS V +A Sbjct: 497 VAPFRMRAESKELHFGYEISGDLPGMVRADERRLRQVLINLLGNAIKFTERGS-VTFRAN 555 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHV 772 +G F V++ G IP D + +F F Q+ G GLGL+I + + L G + Sbjct: 556 MHDGKVRFQVEDTGRGIPGDAMEDIFAPFRQAGQPEQQVEGTGLGLAISKRLVELMDGSI 615 Query: 773 SISS 776 + S Sbjct: 616 GVES 619 >gi|171056745|ref|YP_001789094.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774190|gb|ACB32329.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 215 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 6/199 (3%) Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G LN +Q +Y+ I AS LL L+NDILDL ++AG M+L + L LL I Sbjct: 2 FGELNQRQLEYLHDIHASGHHLLQLINDILDLTKIEAGRMELELAPCDLAQLLESAIGLI 61 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNG 717 + +R+ LG + AD ++L Q +LSNA+ F+ +G V L+A R D G Sbjct: 62 RERATRQGLRLHCEIAPGLGGWTADARKLKQAVLNLLSNAVKFTPEGGRVTLRARRADEG 121 Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D +V + G I VF F S ++ + G GLGLS+V F+ LHGG V Sbjct: 122 DAHVAEIAVIDTGVGIAPGDQALVFEEFRQASGSYLRKSEGTGLGLSLVRRFVELHGGTV 181 Query: 773 SISSSDEGVTTINCRIPSK 791 + S ++ R+P + Sbjct: 182 RVDSVLGRGSSFVIRLPER 200 >gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 595 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 15/262 (5%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GF 590 P+ + + F + T +R E + LR+A + + VS++LR+PL I+ G Sbjct: 339 PVTDGGVAVFFRDATRRMRDE-------QRLRQAQAFEQQLIGIVSHDLRNPLNAILLGA 391 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLND 649 + LL L N + I +++ L+ D+LDL G + + L Sbjct: 392 SSLLAREDLSDRNVAS---IARIRSAAERAARLIRDLLDLTRARLGGGIPVQPRPADLRQ 448 Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 + +V + + I ++ D G + D R+ Q+ +++NA+ + ++G+ V Sbjct: 449 VAQQVVDELEPSYPDRPISVEASGDTH-GQW--DPDRIAQVIGNLVTNALKYGARGTPVA 505 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ A ++G+ SV N G+ IP + +++F A R VGLGL IVE + HG Sbjct: 506 VRIAAEDGEVRLSVHNQGTPIPAETVRTIFEAGGRAAPDPTGRSVGLGLFIVERIADAHG 565 Query: 770 GHVSISSSDEGVTTINCRIPSK 791 G V + SS+E TT +P K Sbjct: 566 GRVEVHSSEEDGTTFTVWLPRK 587 >gi|167645940|ref|YP_001683603.1| histidine kinase [Caulobacter sp. K31] gi|167348370|gb|ABZ71105.1| histidine kinase [Caulobacter sp. K31] Length = 534 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 M+ +V+D V ++ E A A K++++ +S+E+R+PL ++G ++ ++ Sbjct: 135 MVVMADVSDEVELIKSEAEARAAAEAASLAKSAYLAFMSHEIRTPLNGLLGMVQVMAANE 194 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L N Q + + + S LL+++NDILDL+ ++AG + L +LL V + + Sbjct: 195 L---NDGQQRRLGIVERSGRNLLSVLNDILDLSKIEAGKLVRESHVFQLRELLMAVTEPL 251 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 N++ +++ + G G + D ++ Q+ + +LSNA+ F+S G V+ A R Sbjct: 252 VEAAGLNSVSVEMEMEHGLEGCWEGDSAKIRQVLTNLLSNALKFTSDGKVVL--ACRSAP 309 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 D + F V++ G+ I D S+F F RR G GLGL+I ++ GG +++ Sbjct: 310 DGVAFEVRDTGAGISTDRLDSIFENFTQAEASTARRFGGTGLGLTICRDLVDFMGGTLTV 369 Query: 775 SS 776 SS Sbjct: 370 SS 371 >gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] Length = 747 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 123/236 (52%), Gaps = 11/236 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ E + A++ K F+ ++S+++R+P+ IIG T L++ +K +Y Sbjct: 334 KAKNVAKEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 391 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I +SS LL ++ND+LD++ ++AG YS + DL+ E+ T+++E + Sbjct: 392 ADKIDSSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQQTL 451 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722 +I + +V D+ L+QIFS +LSNA+ ++ +G + + + F Sbjct: 452 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVYAKYRFL 511 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V +NG + D ++F+ F ++ + +G GLG++I ++ + GG + + S Sbjct: 512 VSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVES 567 >gi|153840375|ref|ZP_01993042.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AQ3810] gi|149745962|gb|EDM57092.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AQ3810] Length = 683 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 164 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 220 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 221 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 280 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 281 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 340 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 341 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 399 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 400 STFTVSIHVP 409 >gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1246 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 16/256 (6%) Query: 531 IPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 I LP+ + L F +V+ V+A + ++ AD K+ F+ +++ELR+PL + Sbjct: 839 IGLPDGRHGLVCYFRDVSAQVQA-------RQRMQHADRQKDEFLAMLAHELRNPLAPVR 891 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +LL S +++ V I T IL LV D+L+++ + G++ L + L Sbjct: 892 HCVELLAASPD---DARVPGRVTPILMRQTGILGRLVEDLLEVSRITRGLVTLRREPVRL 948 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 + ++ + ++ + V D L + + D RL+Q +L+NA ++ G Sbjct: 949 DSIVEQAVEAARPLFEARGHALTVHGDPAL-TVLGDPTRLVQCVLNLLNNAAKYTEPGGA 1007 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + +++ R + V +NG IP ++ VFN FV RR G+G+GLSIV + Sbjct: 1008 IRIESVRREARAVIGVTDNGRGIPAELLPHVFNLFVQGERTPDRREGGLGIGLSIVAELV 1067 Query: 766 NLHGGHVSISSSDEGV 781 HGG V+ S+ G+ Sbjct: 1068 ARHGGSVAADSAGPGL 1083 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 23/243 (9%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA-- 615 + EAL + D K +F ++S+E R T L Q E + A Sbjct: 317 RAEALIELDRGKTAFFSNISHEFR---------TPLTLLLGPLEEACANPQVPEGVRAQL 367 Query: 616 -----SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 +S LL LVN +LD A ++AG ++ ++ L L ++ + + +R+ Sbjct: 368 GIAHGNSRRLLRLVNALLDFAQIEAGRLRASFRPTDLAALTRDIASPFRSMIERAGLRLA 427 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V+ + LG V D + ++ S +LSNA F+ +G+ + ++ R+ + V + G Sbjct: 428 VVCEA-LGEPVHVDAELWEKVLSNLLSNAFKFTLQGA-IEVRLRREGRHAVCEVADTGIG 485 Query: 730 IPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + D +F RF NA R G G+GL++ + LHGG + +S TT Sbjct: 486 VAADALPRLFERFYRVAGNAGRSM-EGTGIGLALARELVGLHGGTIEAASEVGRGTTFTI 544 Query: 787 RIP 789 R+P Sbjct: 545 RLP 547 >gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp. carotovorum] Length = 933 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L++V +A HE + + + I + F Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I R + +++ G I E Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLEVQIRDTGIGIAELQQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504 >gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 785 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 141/270 (52%), Gaps = 17/270 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + + + ++T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 383 ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL ++ ++ Y I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497 Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I +H+ ++ + ++ D + + D+ R++Q+ + L+NA F+ Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + L R + + VK+ G I + +F RFV Q G GLGLSI + Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792 I GG + ++S +T IP +E Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641 >gi|237749393|ref|ZP_04579873.1| osmosensitive K+ channel signal transduction histidine kinase [Oxalobacter formigenes OXCC13] gi|229380755|gb|EEO30846.1| osmosensitive K+ channel signal transduction histidine kinase [Oxalobacter formigenes OXCC13] Length = 895 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 126/237 (53%), Gaps = 7/237 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEY 612 + +K ++++++NS + +S++LR+PL ++G D LK L S ++K S+ ++ Sbjct: 651 VAQKTVVQMESEKLRNSLLSAISHDLRTPLAALVGLADTLK---LTSPDAKASEKEIIDS 707 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+ + +LVN++LD+A +++G ++LN L +++ S ++ + E I +++ Sbjct: 708 IHHSAMRMNDLVNNLLDMARLESGTVQLNRQWQPLEEVIGSALSSCSSLLKERPINVQL- 766 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D L D + ++ + IL NA ++ S++ + R +G+ I ++ ++G +P Sbjct: 767 -DDSLPLVNIDAVLIERVLANILENASKYTPAHSSIEINGFRQDGNIIITIDDHGPGLPP 825 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++F +F + GVGLGL+I ++ + HGG + S G R+P Sbjct: 826 GRENTIFEKFERGSKENATPGVGLGLAISKAVMKAHGGSIEGESRYNGGARFTLRLP 882 >gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] Length = 479 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 21/275 (7%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 + D L + PLP+ +L ++T +R+ + ++ FV +VS+EL Sbjct: 212 VDDRTLSLTARPLPDGGAVLALYDLTP--------------VRRLEAVRRDFVANVSHEL 257 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT I GF + L+ +L ++Q+++ + AS + +V+D+LDL+ +++G Sbjct: 258 RTPLTVIGGFVETLQDEQLPP--ELRTQFLQMVDASVRRMQRIVDDLLDLSRIESGGWLP 315 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699 N + + L E+ + + + V I+ G + AD QI + + NA+ Sbjct: 316 NPIELDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVY-ADPTAARQILTNLAENAL 374 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 + GS +L + + G +I V++ G I + +F RF A + G GLG Sbjct: 375 RHTPTGSVTLLASPAEGGVWI-GVRDTGVGIGAEHLPRIFERFYRADPARSREAGGTGLG 433 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 LSIV HGG V S+ TTI +P E Sbjct: 434 LSIVRHLTEAHGGRVRADSTLHVGTTIQAWLPKAE 468 >gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] Length = 1417 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 99/182 (54%), Gaps = 2/182 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 AE LT+ A K+ F+ +S+E+R+PL IIGF++++ + G + N + Y Sbjct: 1170 AEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGPIGNDRYKDY 1229 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S + +++L+ND+LDL+ ++AG L +S + ND++NE + + + + I Sbjct: 1230 LKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSANDIINECVALMQPQANRERVII 1289 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728 + + + VAD + L QI +LSN + ++ G VIL NG+ V++ GS Sbjct: 1290 RASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQVILSTTLEPNGEVSIRVRDTGS 1349 Query: 729 SI 730 + Sbjct: 1350 GM 1351 >gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 575 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 8/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ++ L EK A ++ FV +++ELR+PL ++G +L++ +++ Q++ +E Sbjct: 197 DKTLKEKRRA-ENSERATRDFVAMINHELRTPLNGLLGSAELMEDTQI---TDYQNKLLE 252 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S +L ++ND+LD + + AG+++L + L+ ++Q +M E +R + Sbjct: 253 TIHQSGQMLRIIINDLLDFSKMSAGMLELKVANFKPCILVKTIEQIFTPQMAEKCLRFDI 312 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I+D S + D R+ QI ++ NA F+ G + LK + V + G I Sbjct: 313 HIADNLPQSLMGDIDRVQQILVNLVGNAFKFTKSGH-ISLKVGWQENALVLIVSDTGCGI 371 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D K +F F V N+ + Q G GLGLSI + ++ G +S S + ++ Sbjct: 372 PQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKL 431 Query: 789 P 789 P Sbjct: 432 P 432 >gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1727 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 37/262 (14%) Query: 549 VRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V++ + L +KN+AL R A EI K+ F+ +S+E+R+P+ +IG T LL + Sbjct: 960 VKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDM---N 1016 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN +Q +VE I S LL ++NDILD + +++G ++L + L + E ++ + Sbjct: 1017 LNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFKLRTCIEESLDLLSAR 1076 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNG 717 E + + I D V D RL Q+ +LSNA+ F+++G ++ + +D+ Sbjct: 1077 ASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQGEVIVSVTSSLIQDSA 1136 Query: 718 DFI---------------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 + F+VK+ G IP D +F F V + Q G Sbjct: 1137 QSLISSEEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGT 1196 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGL+I + + GG + + S Sbjct: 1197 GLGLAISQRLSEMMGGKMWVVS 1218 >gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 695 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 121/222 (54%), Gaps = 16/222 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+AD +K+ F+ +S+ELR+PLT+I+G+T+LL + +++ ++V+ + + L Sbjct: 453 READRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSP--AERREFVQTVYNEANHLYQ 510 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V D+L + ++AG ++LN + L +++++ + ++ + + I L A Sbjct: 511 IVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTMLIDIPP-HLPPVYA 569 Query: 683 DRQRLLQIFSKILSNAMDFSSKGS--------TVILKAARDNGDFI-FSVKNNGSSI-PE 732 DR ++ Q+ +++NA+ +S G V L G F+ +V + G I PE Sbjct: 570 DRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGIAPE 629 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 D+ + ++ RF V N + + G GLGLSI ++ + LHGG + Sbjct: 630 DLPR-IWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRI 670 >gi|148657294|ref|YP_001277499.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569404|gb|ABQ91549.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 572 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 11/240 (4%) Query: 560 EALRKADEIKNSFV-QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +A+R+ E + + Q V ++L++PLT +IGF +LL T G LN Q +E + Sbjct: 336 DAMRQQSERNVTLLAQMVIHDLKNPLTALIGFLELLST---GELNDPQRALIESALRTGR 392 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L LV+D+LDLA + G ++L S + L DL E ++ + + + + L Sbjct: 393 NLAGLVDDLLDLARYNEGRLRLRLSDVSLPDLCAECAIELSGWLAYESKTLILDVPQTLP 452 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD-FIFSVKNNGSSIPED 733 + AD + L ++ +LSNA+ + G+T++L+A R D G+ + V + G IP D Sbjct: 453 TIRADSRLLRRVLLNLLSNALKHTPYGTTIMLRAWREPHPDGGEQTVIEVADTGPGIPPD 512 Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F FV + ++ GLGL+ + ++ HGG + +SS T R+P + Sbjct: 513 QIERIFEPFVGAGESRPARQSSTGLGLAFCKMAVDAHGGTIEVSSFPGDGATFRIRLPDR 572 >gi|46579036|ref|YP_009844.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448449|gb|AAS95103.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232883|gb|ADP85737.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 832 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 9/230 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 ++ + A+ +K++F+ ++S+++R+PLT IIG DLL+ G ++S Y+ + Sbjct: 236 ISSRQAVAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAP--GCPPERRSAYIAQLK 293 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL +VNDI D + +++G ++L L + ++E + + + I Sbjct: 294 GASANLLEIVNDITDYSCLESGRLRLLPRHFALRNAVDECLGLFRFTCEQKGLTLTADIP 353 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSS 729 G S D RL Q ++SNA+ F+ +G+ TV ++ + + + F+V++ G Sbjct: 354 PGLPDSLTGDDFRLRQALGNLVSNAVKFTRRGTITVAVREEERSAEDVMLRFTVQDTGVG 413 Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP ++F FV AH + G GLGL+I + GG + S+ Sbjct: 414 IPLHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHST 463 >gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] Length = 1138 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 136/269 (50%), Gaps = 21/269 (7%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LT ++T+SV++ R L E +A K++F+ +S+++R+PL +IG T+L + Sbjct: 480 LTLEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLALCTPN 539 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 S K + ++ I+ SS +LL L+ND+LD++ +++G M+L + L + L V I Sbjct: 540 DS--KKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVVTVIQ 597 Query: 660 TKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714 ++ V I+ L D RL Q+ + +L NA+ F+ KG + L+ + Sbjct: 598 SQTSVRGQHFDVNAWNITHELL---CGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEISEI 654 Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767 + F+F + + G + + +F F NA+ +G GLG++I + ++L Sbjct: 655 PSPDPASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRIVDL 714 Query: 768 HGGHVSISSSDEGVTT----INCRIPSKE 792 GG + + S TT I+ R+ S++ Sbjct: 715 MGGSIRVESEPGKGTTFTVEISVRLSSRQ 743 >gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 382 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 K+ F ++S+EL++PLT I+G L+ K S + K S+++ I + LL L+N+ Sbjct: 120 KSEFFYNMSHELKTPLTVILGAIQLIEQKNSVIEVDRRKSSKHITTIKQNCYRLLRLINN 179 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LDL+ +++G +K N + L+ E+ S+ + ++ I+ + + D + Sbjct: 180 MLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISAVDIDK 239 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 + +I +LSNA+ F++ G + + + N SVK+ G IP+DM +VF R+ V Sbjct: 240 IERIILNLLSNAIKFTNPGGKISITVSAKNDKVHISVKDTGIGIPKDMLHNVFERYQQVD 299 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 ++ G GLGLSIV+SF+ LH G++ + S + + +P K Sbjct: 300 SSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPIK 346 >gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] Length = 631 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 14/249 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V +++ + L + +A A + K+ F+ ++S+E+R+PL +IG LL T Sbjct: 343 LVKYNQALKRQLNLIQAKQAAEMAAQEKSEFLANMSHEIRTPLNGVIGVAQLLLTM---D 399 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L Q++ V I S LLN++NDILD +++G ++L +LL V + + Sbjct: 400 LKDDQAELVAIIEDSGKTLLNIINDILDFLRIESGSLRLEARCFSFQELLKSVFTLLKVQ 459 Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--------TVILKA 712 + +I ++ ++D + D RL QI +L NA+ F++ GS TV + Sbjct: 460 ADQKDIDLQYCVADSIPNILMGDDLRLRQILFNLLGNALKFTATGSVQLVITSHTVPSLS 519 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + F + + G I +F F+ RR G GLGL+I + +NL GG Sbjct: 520 DPPTEELSFQILDTGIGIQVAQLNQLFQPFIQADASISRRYGGSGLGLAIAKRLVNLMGG 579 Query: 771 HVSISSSDE 779 + + S+ E Sbjct: 580 KIWVESNGE 588 >gi|168704424|ref|ZP_02736701.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 538 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 157/364 (43%), Gaps = 37/364 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLW---KTEENRLSP--------GTHIRNIAATC 487 TID + V V P GR L+NPA R+L+ T + P G + + A Sbjct: 193 TIDSFPDPVLVVDPAGRADLANPAARALFGVGPTAQGDPGPVWSPPEPLGGPVAD-ALQL 251 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 R Y + D +D + +D ++ + + D P+ T+ V + D Sbjct: 252 QRAY-QPDQFDQTVSFRLGGED--RTYLPHVRPIRD----------PDGDTLGAAVVLHD 298 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R R D+ K+ V VS+EL++PLT++ +L +G L +KQ+ Sbjct: 299 VTR-----------FRLLDQFKSDLVATVSHELKTPLTSVRLAVHILLEETVGPLTTKQT 347 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + S+ LL L+ +L LA + + + +LL + + + +I Sbjct: 348 ELLIDARDSAERLLALIEQLLALARLQKPHDEGTFHPADPAELLRTAADAARARADDKHI 407 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNN 726 + V ++ + + V D R Q +L+NA+ ++ G TV L A +G + SV + Sbjct: 408 TLAVNTNAVVPAVVVDSDRFGQALGNLLNNAITYTPPGGTVALAAGMTTDGAVVLSVADT 467 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G IP + VF+RF + + G GLGL+IV+ + H G V+ S TT Sbjct: 468 GVGIPAEHLAHVFDRFFRIPGQSEEGGTGLGLAIVKEVVVAHRGTVTCESEPGKGTTFRI 527 Query: 787 RIPS 790 +P+ Sbjct: 528 ILPA 531 >gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 701 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 40/335 (11%) Query: 479 HIRNIAATCSRYYNESDGWDLFAAI--------ITSFDDERKSLQGTLELLSDSVLE--Y 528 H +A +Y E++ +D A + I+ F DE S + T L + V++ Y Sbjct: 206 HQSELAKEVLKYPPENNLYDPPAKVLFEQKSLLISEFTDEMIS-KATKNLEHEKVIQKTY 264 Query: 529 SI----IPLPNAQTMLTFVNVTDSVRAERALTEKNEAL------RKADEIKNSFVQH--- 575 + +PL Q L + + + R LT ++ A+ R A + N+++ H Sbjct: 265 PLSLMAVPLVARQNTLGVITFVTTGYSNRRLTTEDLAIAEEIGRRAAQAVDNAWLYHQAQ 324 Query: 576 ------------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +S+ELR+PL IIG+ +LL L +KQ+ VE I ++ + +L Sbjct: 325 IANRAKDDFLAMLSHELRTPLNPIIGWCELLNRGNLSPEQTKQA--VEIIDRNAKLQSHL 382 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + D+LD++ + G + L ++ L ++ +++ ++++ I+ D + D Sbjct: 383 IEDLLDVSRILQGKLHLQKCSLDLKTIILSAIETVQLMAKKSSVTIETKLDTDVHPISGD 442 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+ +LSNA+ FS STV + + +G + +K+ G I + +F+RF Sbjct: 443 ITRLHQVVWNLLSNAIKFSPSHSTVTVSLSAVDGMALIEIKDQGKGIEPEFLPYIFDRFS 502 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + R G+GLGL+IV + + +H G + S Sbjct: 503 QSESSKNRDYGGLGLGLTIVRNLVEMHDGKIKADS 537 >gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] Length = 1044 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 11/249 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T ER L E A A++ K++F+ +S+E+R+PL I+G +L+ L Sbjct: 531 FSDITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLAD 590 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q VE +S++LLNL++DILDL+ ++AG M + L + + + Sbjct: 591 TQRERLQTVE---GASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPL 647 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 ++ VI D L S +V D R+ QI + ++ NA+ F+ +G + RD+ D Sbjct: 648 ATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPA 707 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + V + G + + ++F F RR G GLGL++ + + G + + Sbjct: 708 SPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDV 767 Query: 775 -SSSDEGVT 782 S+ EG T Sbjct: 768 KSAPGEGST 776 >gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 1026 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 9/222 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++IKN F+ VS+ELR+PLT I GF LL T + + K ++ +S L+ LVN Sbjct: 797 EQIKNEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKSQKAKWMIQQALTNSDRLVRLVN 856 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 DILDL + +G ++L DL+ + + + + I I + A Sbjct: 857 DILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLTP--TTACVWASPD 914 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--- 742 ++Q +LSNA+ FS S + L A + +F V++ G IP + +++F RF Sbjct: 915 LIIQTLINLLSNAIKFSPHNSVITLSAQPQSDWVLFKVQDQGRGIPANKLETIFERFQQV 974 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +S+A + G GLGL+I +S I H G + S+ EG T Sbjct: 975 DISDAR--AKGGTGLGLAICQSIIQQHDGSIWAESTLGEGST 1014 >gi|22095685|sp|Q9XH57|ETR2_PELHO RecName: Full=Ethylene receptor 2; AltName: Full=PhETR2 gi|5006606|gb|AAD37577.1|AF141929_1 ethylene receptor homolog [Pelargonium x hortorum] Length = 741 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE + SS +L L+ND+LDL+ ++ G ++L+ T L+ LL EV I Sbjct: 375 ---TPEQRLMVETVLKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALLREVHNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + I + L + V D +RL+QI ++ NA+ FS +G+ I ++ Sbjct: 432 PIASVKKLCISLNVATDLPEYAVGDEKRLVQIILNVVGNAVKFSKEGNISITAFVAKSES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD DF VK++G I P+D+ + +F +F + G GL Sbjct: 492 LRDPRAPDFFPICGENQFYLRVQVKDSGLGINPQDIPR-LFTKFAQTQPVATKNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 551 GLAICKRFVNLMEGHIWIDSEGPG 574 >gi|22095686|sp|Q9XH58|ETR1_PELHO RecName: Full=Ethylene receptor 1; AltName: Full=PhETR1 gi|5006604|gb|AAD37576.1|AF141928_1 ethylene receptor homolog [Pelargonium x hortorum] Length = 740 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 34/260 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ + Sbjct: 315 ESMRARDLLMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L S+Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + +V I Sbjct: 373 -DLTSEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHAVFRQVFNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + I + L +V D +RL+QI ++ NA+ FS +G + ++ Sbjct: 432 PIASVKKLFITLNVSPDLPEYVIGDEKRLVQIMLNVVGNAVKFSKEGIISVTAFVAKSES 491 Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 RD DF VK++GS I P+DM K +F +F + + G GL Sbjct: 492 VRDPRAPDFFPVSSDNQFYMRVQVKDSGSGINPQDMPK-LFTKFAQSQPVATKNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISS 776 GL+I + F+NL GH+ I S Sbjct: 551 GLAISKRFVNLMDGHIWIDS 570 >gi|167824555|ref|ZP_02456026.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 9] Length = 351 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +GS + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] Length = 536 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 11/242 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ++ L + E + IK +F+ ++S+E+R+P+ IIG LLK + +L+ Q + + Sbjct: 143 QKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIGLASLLKKT---TLSPDQEEMIR 199 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS LL ++NDILDL+ +++G K+N + + +V + + E + + Sbjct: 200 LLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTCTDVTNLLRIRAMEKKLDLIT 259 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNN 726 D L + + AD RL QI ++ NA+ F++ GS T+ ++A G+ I FSV + Sbjct: 260 DYDPALPNLIMADSLRLNQILMNLIGNAIKFTASGSVTLKVEALDKKGNNIQVRFSVIDT 319 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I +D +F F + + G GLGLSIV++ L GG + + S+EG + Sbjct: 320 GIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGILEV-FSEEGHGST 378 Query: 785 NC 786 C Sbjct: 379 FC 380 >gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 844 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILL 621 ++A K+ FV ++S+E+R+P+T ++G+ DLL GS N + +++ I + + LL Sbjct: 463 QQASAAKSEFVANMSHEIRTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNGSFLL 518 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++NDILDL+ ++AG M+ N+L+ +V + + E + V + S + Sbjct: 519 DIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTIPSQI 578 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKS 737 +D +RL QI ++ NA+ F+S+GS ++ + +G+ F V + G I + Sbjct: 579 ESDPKRLRQILVNLIGNAVKFTSEGSIRLVISYDASGEPPAIQFEVIDTGIGITDAQLSQ 638 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F R G GLGL+I + GG + + S TT C+I Sbjct: 639 LFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSGTTFTCQI 691 >gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] Length = 875 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 33/337 (9%) Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD--DE 510 D I +NP + ++K EE L T ++ Y N+ D L I + DE Sbjct: 40 DRHITFANPRYMEMFKVEEKDLQTLTPLQ-------VYQNKEDFESLSVRINAQENIVDE 92 Query: 511 ---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 K+L G L + S + + L + + F ++T + +A++ L E A + Sbjct: 93 VLAMKTLTGELLQVMGSF--HHMKYLDQSMVVAWFYDITAAHQAKQ-LAED------AAK 143 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +K+ F+ ++S+E+R+P+ IIG + L LKT L+ +Q YV+ I + LL ++ND Sbjct: 144 MKSEFLANMSHEIRTPMNGIIGMSHLALKTD----LDPRQRDYVKKIQQAGKHLLGIIND 199 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685 ILD + ++AG + + T ++++++ + I K E N+ + L + D Sbjct: 200 ILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHFPQDLPHKLIGDPL 259 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741 RL QI +NA+ F+ KG +I + D G FI F+V + G + ++ +F Sbjct: 260 RLSQILINYGNNAIKFTEKGEVIISAEILERDDEGIFIKFNVSDTGIGLTKEQKSKLFQS 319 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F R+ G GLGL+I + L GG V + S Sbjct: 320 FQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVES 356 >gi|260171984|ref|ZP_05758396.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|315920296|ref|ZP_07916536.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|313694171|gb|EFS31006.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] Length = 1365 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 802 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 862 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQ 919 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 920 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 980 WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055 >gi|227543825|ref|ZP_03973874.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A] gi|300908893|ref|ZP_07126356.1| sensor histidine kinase [Lactobacillus reuteri SD2112] gi|227186202|gb|EEI66273.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A] gi|300894300|gb|EFK87658.1| sensor histidine kinase [Lactobacillus reuteri SD2112] Length = 381 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 138/263 (52%), Gaps = 15/263 (5%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q ++T VN + DS A R++ ++ RK ++ K+ + +VS++LR+PLT+IIG+ L Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S +Y + + LV+D+ + V +N I LN L+ + Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233 Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S + I I VI + + AD ++L ++F+ ++SNA + + S + + Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769 A ++N + V N+G+ IPE +F RF + A R + G GLGL+IV+S ++LH Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G V + +S+E T +P K+ Sbjct: 352 GSVKV-TSNEDETAFIVTLPLKQ 373 >gi|255693955|ref|ZP_05417630.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620229|gb|EEX43100.1| putative two-component sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 482 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 118/215 (54%), Gaps = 2/215 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL+ Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLS 314 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 + ++L++ V+AG ++ +L+ ++ + + NI+I+V + K+G Sbjct: 315 ITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D +++ + + +LSNA+ +S + VI+ A +D V++ G I KS+F+R Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFDR 434 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + +G GLGLSI + F+ HGG +++ S Sbjct: 435 YF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|254932175|ref|ZP_05265534.1| sensor histidine kinase [Listeria monocytogenes HPB2262] gi|293583732|gb|EFF95764.1| sensor histidine kinase [Listeria monocytogenes HPB2262] gi|332313012|gb|EGJ26107.1| Sensor histidine kinase [Listeria monocytogenes str. Scott A] Length = 459 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 8/239 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 + T+ L+K++ + FV +VS+EL+SPLT++ GF LL + L +Q++Y+ + Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGSVTL--TEKEQAEYLTVL 281 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S +T L +L +L LA++D + L++ ++ Q E + I + Sbjct: 282 SEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL-- 339 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732 D ++ D + L Q++S +L+NA+ F+ +G + + V+++G I E Sbjct: 340 DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGKE 399 Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 DM K +F+RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 400 DMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 4/244 (1%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S R+ A + E L + D K +F ++S+E R+PLT I+G + L+T +L ++ Sbjct: 315 SARSYEAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRT-QLAGADAHIR 373 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + ++ + + L LVN +LD + ++AG M+ Y L+ + ++ + + + + Sbjct: 374 EELDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDKAGL 433 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + DR ++ +LSNA+ F+ GS + A D + +V + G Sbjct: 434 GFHIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFDGSIRVTVHAEDT-HAVVTVADTG 492 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +P +F RF + NA G G+GL++V+ + LHGG ++ S++ G T Sbjct: 493 IGVPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGGTRFT 552 Query: 786 CRIP 789 R+P Sbjct: 553 VRLP 556 >gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 935 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 545 VTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +T +++ + A E ++A+ KA+ K+ F+ +S+ELR+PL I+GF LL+ + +L Sbjct: 517 LTATLQDKNAELESSKAIAEKANRAKSEFLSSMSHELRTPLNAILGFAQLLEKGQ-PTLT 575 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q ++ I + LL+L+N+ILDLA +++G + L+ +++L D++NE K + + Sbjct: 576 HTQEVRIQQIIKAGWYLLSLINEILDLAVIESGRLSLSRESVLLIDVINESKAMVEPQAL 635 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD 718 + IR+ + AD RL Q+ +L+NA+ ++ + T+ +KA D Sbjct: 636 KREIRLNFLPFSHALHANADHTRLKQVLINLLTNAIKYNRQHGTITVECTEVKAIDKLQD 695 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I ++K+NG + E +F F G + G G+GL + + + L GG + + S Sbjct: 696 RIRITIKDNGYGLSEANISQLFQPFNRLGQESGSQEGTGIGLVVTKQLVELMGGTIGVKS 755 >gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01] gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01] Length = 809 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 116/221 (52%), Gaps = 12/221 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+P+ IIG + LL + +Q +YV+ ++ SS LL+L+ Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + ++AG ++L + + + +V+ + K + +R ++ D K+ + V D Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLAIDPKIPTMVIGD 355 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +L Q+ + ++ NA+ F+ G + + F V ++G I ED +S Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVTLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415 Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 VF++F R G GLGL+I + + L G + ++S Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456 >gi|325567670|ref|ZP_08144337.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755] gi|325159103|gb|EGC71249.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755] Length = 402 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 3/219 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + + + Sbjct: 163 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 221 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV+D+ + V + +N + L+ ++ + I+I+ + + Sbjct: 222 LVDDLFEYTKVRQPSVPINVMEFDMAQLVEQLAADFELEASRKGIKIETYTRPEHIEMDG 281 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F+ +LSNA+ + + ++ + + I +VKNNG IP+ S+F+RF Sbjct: 282 DTEKLVRVFNNLLSNALKYGKGADKIRMEVEKVGTEAILTVKNNGQMIPKQALDSLFDRF 341 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V + + G GLGL+I +S + LHGG++ S+ E Sbjct: 342 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIYAKSTPE 380 >gi|308126506|ref|ZP_05910586.2| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308108483|gb|EFO46023.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 780 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S L +Q ++ Sbjct: 261 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 317 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 318 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 377 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 378 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 437 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 438 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 496 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 497 STFTVSIHVP 506 >gi|302871748|ref|YP_003840384.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] gi|302574607|gb|ADL42398.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor obsidiansis OB47] Length = 467 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + +N S + + Sbjct: 269 VEGILDRTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINVNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L ADR + ++ +L NA+ ++ G + + Sbjct: 327 IAEELIKFEKRIEEKEIDVSLQVDEEL-VVKADRDLISRVIHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|239993130|ref|ZP_04713654.1| PAS sensor signal transduction histidine kinase [Alteromonas macleodii ATCC 27126] Length = 943 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 128/242 (52%), Gaps = 10/242 (4%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D+ R A+ +AL++AD K+ F+ +++ELR+PL I ++L++ +++ Sbjct: 555 DTTRERNAI----DALQEADRRKDEFLATLAHELRNPLAPIRNALEILQSDDYS--QNQK 608 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 S+ + T ++ LV+D++D++ + G ++++ + L ++L+ ++I + E Sbjct: 609 SEAFGRVERQVTQMIRLVDDLMDVSRITRGKIRIHRKPVNLCEILDTAIETIQPLIDEKQ 668 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V + D RL QIFS I++NA ++ G + + + +G +VK+N Sbjct: 669 HTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYTPPGGNIEVCISTCDGKVTIAVKDN 728 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVT 782 G IP KSVF+ F V A + G+G+GL++V+ LH G V++ S D+G T Sbjct: 729 GEGIPAGKLKSVFDMFTQVDGALERSQGGLGIGLTLVKKLTELHDGTVNVQSDGVDKGTT 788 Query: 783 TI 784 I Sbjct: 789 FI 790 >gi|237717986|ref|ZP_04548467.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] gi|229452627|gb|EEO58418.1| two-component system histidine kinase [Bacteroides sp. 2_2_4] Length = 482 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++ +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + VI+ A +D V++ G I KS+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|150017918|ref|YP_001310172.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904383|gb|ABR35216.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1024 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 131/539 (24%), Positives = 240/539 (44%), Gaps = 87/539 (16%) Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL-WEIDLA------FLATN--PS 351 + +Q I+ N++ + D+ + N S + + IDLA FL S Sbjct: 369 IEEQKNKLEAIIRNMSEGLFTIDKEGNINILNSSAKDFFYNIDLANKISENFLKVKFYDS 428 Query: 352 NDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408 ND +++ PE L +++ K + Y+ + K G H V+ +P Sbjct: 429 NDNIIK--------PENLPSYRVLKGEKINEYRMTLKRK-------GLEYHFNVSGSPLY 473 Query: 409 -RGGTIWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAF 463 G I T V + NT++K+Q + I+++S+ + + +G+I L N Sbjct: 474 DEDGDIVKALLCTRNVTEQVNSNTIIKMQKKQLEAVIENISDAIYIADKEGKIILMNAEG 533 Query: 464 RSLWK-------------TEENRLSPGT--HIRNIAATCSRYYNESDGWDLFAAIITSFD 508 R L T++ + G H+ N++ C+ + II D Sbjct: 534 RGLLSDYYAVKNADDFNITKQAFDTSGNEIHVENLSLKCAL---RGEKIKNRTIIIKRSD 590 Query: 509 DERKSLQGTLELLSDSVLEYS---IIPLPNAQTMLTFVNVTDSVRAERALTEKN---EAL 562 E T+ + S + + S I+ L + ++TD E+ + EK E L Sbjct: 591 KEL-----TIRVNSTPIYDTSGNLIMALA------CYHDITDLAEKEKIIVEKYRQLEVL 639 Query: 563 RK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 ++ A++IK+ F+ ++S+E+R+P+ I G LL+ + ++ +QS+Y+ + S Sbjct: 640 KEEAEIANKIKSLFLDNMSHEIRTPMNGIFGTIQLLEKT---PMSEEQSKYITLLKNSGN 696 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL ++N+ILD++ ++AGI KLN L + +++ ++ + + I+ D Sbjct: 697 KLLTIINNILDISKIEAGIHKLNDGKFALKKITDDIYTNLLESGNSKGLEIRYYFDPN-A 755 Query: 679 SFVA--DRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNNGSSIP 731 F+A D +L QI ++SNA+ F+ KG S + K + DN D++ F++ + G I Sbjct: 756 EFIAIGDELKLKQILDNLISNAVKFTEKGYISFRVTKVSSDN-DYVKIKFTIADTGIGID 814 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINC 786 E +F F ++ G GLGLSI + + G++S S+ EG T T C Sbjct: 815 ERFKSKIFGIFSQGDISVNKKYTGTGLGLSISKQLAMMMNGNISFESTLGEGSTFTFTC 873 >gi|298483120|ref|ZP_07001300.1| two-component sensor histidine kinase [Bacteroides sp. D22] gi|298270637|gb|EFI12218.1| two-component sensor histidine kinase [Bacteroides sp. D22] Length = 482 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + V++ A +D V++ G I KS+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 986 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 140/262 (53%), Gaps = 15/262 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL+E A A+ K+ F+ ++S+++R+P+ IIGFT L S Sbjct: 444 ILVMSDRTSDWKMNQALSEAVHAAETANRAKSIFLSNMSHDIRTPMNAIIGFT-TLAVSN 502 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + + Y+ I +SS LL+L+NDILD++ +++G + L + + L+D+L+++K I Sbjct: 503 IDD-RKRVRDYLGKILSSSNHLLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTII 561 Query: 659 ATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 + ++H + + + + D D+ RL Q+ +LSNA+ F+ G TV ++ + G Sbjct: 562 SGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCPG 621 Query: 718 D------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767 + VK+NG + ++ + +F+ F S R Q G GLG++I ++ +N+ Sbjct: 622 TVKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIVNM 679 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + + + T R+P Sbjct: 680 MGGTIEVQTEQGKGTEFIVRLP 701 >gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] Length = 930 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 133/256 (51%), Gaps = 9/256 (3%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 418 AICVLVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 477 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + V ++ SS +LL +++DILD + +++ +K+ +++ + + Sbjct: 478 ---ALPEGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGN 534 Query: 658 IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + ++ D RL Q+ S +L+NA+ F+ G ++ AR Sbjct: 535 YLPLVVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVTAR-- 592 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 G ++ FSV++ G IPE +F+ F QR +G GLGL+I E IN+ G ++ Sbjct: 593 GSYLEFSVRDTGVGIPEKEISRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDIA 652 Query: 774 ISSSDEGVTTINCRIP 789 + S + + RIP Sbjct: 653 VESEPGLGSMFSIRIP 668 >gi|262408173|ref|ZP_06084720.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|294806731|ref|ZP_06765558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262353725|gb|EEZ02818.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|294446013|gb|EFG14653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1365 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 802 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 862 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 919 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 920 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 980 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055 >gi|209695978|ref|YP_002263908.1| aerobic respiration control sensor protein ArcB [Aliivibrio salmonicida LFI1238] gi|208009931|emb|CAQ80244.1| response regulator, aerobic respiration control sensor protein ArcB [Aliivibrio salmonicida LFI1238] Length = 788 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 12/225 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL KA K +F+ +S+ELR+PL I+G + +L ++ L+ +Q Y+ I+ S+ Sbjct: 274 EALEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LDDEQHNYMRTINVSAIT 330 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L N+ NDI+D+ D ++L + + E++ + +R + L + Sbjct: 331 LGNIFNDIIDMDKFDRRRLELLPKPLDFISFVTEMENISGLMAEQKGLRFDLERLTSLPA 390 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMC 735 + D RL Q+ ++ NA F+ +G V+ +A DN D F V+++G IPE Sbjct: 391 HICVDSTRLRQVLWNLIGNATKFTKEGGVVMSVSADIHGDNADITFEVEDSGIGIPESEL 450 Query: 736 KSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISS 776 ++VF + +G+ G G+GL++ + INL GG ++++S Sbjct: 451 ENVFTMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTS 494 >gi|59712729|ref|YP_205505.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri ES114] gi|59480830|gb|AAW86617.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Vibrio fischeri ES114] Length = 788 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 16/244 (6%) Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E AL+KA K +F+ +S+ELR+PL I+G + +L S+ L+ +Q Y Sbjct: 264 RNITERKEYEDALQKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSR---LDDEQHNY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S+ L N+ NDI+D+ D ++L + + E++ + +R Sbjct: 321 MRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFISFVTEMENISGLMAEQKGLRF 380 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L ++ D RL Q+ ++ NA F+ +G V+ +A +D+ + F +++ Sbjct: 381 DLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVVMSVSADIHQDSAEITFEIED 440 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSS-DEG 780 G IPE+ ++VF + +G+ G G+GL++ + INL GG ++++S D G Sbjct: 441 TGIGIPEEELENVFAMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTSEVDFG 499 Query: 781 VTTI 784 T I Sbjct: 500 STFI 503 >gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] Length = 1430 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 14/260 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ + + LT+ ++ A E K+ F+ ++S+E+R+PL I+ +L + ++G Sbjct: 773 VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 832 Query: 601 SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + Q + +S S+ LL++VNDILD + ++AG + L+Y L+ L V Q A Sbjct: 833 ----YEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 888 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAAR 714 + H ++ K D +L V D R+ Q+ + +LSNA+ F+ G + +L Sbjct: 889 RQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFTEYGTVGLAAKLLDLDG 948 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 + F V ++G I E+ +++F FV A G R G GLGL+I + I GG Sbjct: 949 EQQQICFEVFDSGIGISEEHIRNLFQPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGS 1007 Query: 772 VSISSSDEGVTTINCRIPSK 791 ++++S +T + +P K Sbjct: 1008 LNVTSKINIGSTFSITLPLK 1027 >gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 774 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 126/248 (50%), Gaps = 18/248 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V++ R AL + A + K+SF+ +S+E+R+P+ ++G +LL+++ +L Sbjct: 213 DVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLEST---ALT 269 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V I +S LL ++NDILD + V++G + L + L + + +V + + Sbjct: 270 VQQKEFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLILFSNQAD 329 Query: 664 ENNIRI-KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------L 710 E ++ + ++ + + F D R+ QI S ++SN++ F+ KG I L Sbjct: 330 EKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKGEISIHVTISPIEAEAL 389 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 R F+VK+ G IP+ +F F V ++ + G GLGLSI + + L Sbjct: 390 SEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRLVELM 449 Query: 769 GGHVSISS 776 GG + + S Sbjct: 450 GGQMWVES 457 >gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 801 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V++S +A RAL A+ K+ F+ ++S+E+R+PL +IG T LL + ++ Sbjct: 129 DVSESRQARRALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVIGMTTLLMDTP---MS 185 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q + I AS LL ++NDILD + D G +++ L + + +A + Sbjct: 186 DEQLDFARTIRASGETLLGVINDILDFSKADVGKLEIEQQRFDLRRCVEDALDLVAPRAL 245 Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD-- 718 E + + +I DG + V D R+ QI + +LSNA+ F+ +G +++ D GD Sbjct: 246 EKRLNLAYLIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGEVLVIIDSEPVDAGDGP 305 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V+++G I + +F F R+ G GLGL+I + L GG VS Sbjct: 306 LHRIHFAVQDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLGLAISKRLAELMGGTVS 365 Query: 774 ISS 776 + S Sbjct: 366 VQS 368 >gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] Length = 948 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 11/226 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ EA +A K F+ +S+E+R+P+ I+G +DL TS + + + + + I +S Sbjct: 558 ERAEAANRA---KGEFLSRMSHEIRTPMNAIVGLSDL--TSMMDDVPEQVRENLGKIRSS 612 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S LL L++DILD++ +++G M ++ +N + E++ + + + V D + Sbjct: 613 SQYLLRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKDVE 672 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731 + + D RL Q+ + ++SNA F+ G ++I++ R + F V +NG I Sbjct: 673 NRTLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVGIS 732 Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + K VF F + + +G GLGL+I + + L GG + + S Sbjct: 733 VENQKRVFGAFEQVGPNYSKSQGTGLGLTISRTIVGLMGGELKLKS 778 >gi|83954602|ref|ZP_00963313.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1] gi|83840886|gb|EAP80057.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1] Length = 798 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 546 TDSVRAERALTEKNEALR------------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 +D+V ERA + ALR K +++K+ FV VS+ELR+PLT+I G L Sbjct: 532 SDAVVVERA--KNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPLTSIKGALGL 589 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ ++ + V+ +A+ L+ LVNDILD+ ++AG M + L D++ Sbjct: 590 LEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKPEKLGDIVTL 649 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + E + I V + + D+ R++Q+ + +LSNA F+ + V + A Sbjct: 650 AAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYPETAVTVTTA 709 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 SV N G+ I ++ + +F F ++ QR G GLGL+I + GG Sbjct: 710 PVGDMTKISVTNLGNGISKEFRERIFQPFSQAEASNTRQRGGTGLGLNISRHLVEAMGGE 769 Query: 772 VSISS--SDEGVTTINCRIPSKE 792 + S +E V C PS E Sbjct: 770 IGFDSVPGEETVFWFTC--PSTE 790 >gi|323976628|gb|EGB71716.1| TMAO reductase sytem sensor TorS [Escherichia coli TW10509] Length = 904 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR + I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLVTEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPSKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 985 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 143/264 (54%), Gaps = 19/264 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL+E A A++ K++F+ ++S+++R+P+ IIGFT L Sbjct: 444 ILVLSDRTSDRKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----A 499 Query: 599 LGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +++ K+ Y+ I +SS LL+L+NDILD++ +++G + L + + L+++L+++K Sbjct: 500 VSNIDDKERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKT 559 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 I+ ++H + + + + D D+ RL Q+ +LSNA+ F+ G TV ++ Sbjct: 560 IISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREY 619 Query: 716 NGD------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765 G + VK+NG + + + +F+ F S R Q G GLG++I ++ + Sbjct: 620 PGTQRGCELYEIRVKDNGIGMSQKFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIV 677 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 ++ GG + + + T R+P Sbjct: 678 DMMGGTIEVQTEQGKGTEFIIRLP 701 >gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 1205 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 15/275 (5%) Query: 529 SIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 S+ L NA+ LT ++T+ R E L E A+ K F+ +S+E+R+P Sbjct: 514 SVTGLTNAEGALTGFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTP 573 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 + IIG + LL +K L S Q V+ I S L++++ DILD + ++A + L Sbjct: 574 MNGIIGMSGLLLETK---LESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEE 630 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702 T L+ +++ V + K+ + + VI D + S D RL QI ++ NA F+ Sbjct: 631 TFSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFT 690 Query: 703 SKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 +G + + AR G F+V + G + + +F F RR G GL Sbjct: 691 DEGEVNLFISVARGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGL 750 Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GL I + + + GG + + S+ + R+P++ Sbjct: 751 GLVISKRLVEMMGGAIHVESTPGKGSRFFFRLPAR 785 >gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] Length = 649 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 121/218 (55%), Gaps = 8/218 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 130 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 186 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 187 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 246 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 247 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 306 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 307 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQ 343 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + +KN+ L+ AD++K+ F+ S+ELR+PL ++G + L G L Q + +E Sbjct: 427 KIIQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDPQRRQLEM 486 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L NLV+D+LD + G + ++ I L+ + V + + + +RI Sbjct: 487 LINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 546 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L AD QRL Q+ ++ NA+ ++S+G +I+ A V + G IP Sbjct: 547 IPADLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 605 Query: 733 DMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISS 776 + + +F + A+ G R+G GLGLSI I L GG + +SS Sbjct: 606 EQLEHIFEPLI-QANSGSANYRQGAGLGLSISRQLIELMGGRLYVSS 651 >gi|312891334|ref|ZP_07750852.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296195|gb|EFQ73346.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 471 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 67/365 (18%) Query: 444 SEGVAVFGPDGRIKLSNPAFRSL-------------W---------KTEENRLSPGTHIR 481 SEG+ DG+I S+P+ +++ W K E +H Sbjct: 140 SEGIVTMNVDGKIIYSSPSVQNIIGYTDEEFIHLPTWQLLHEDEASKVREQFFRFASHPN 199 Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541 R +++ W + +T+ DER P + Sbjct: 200 KTLTIIHRMKHKNGNWIWIESKMTNLLDER----------------------PINAVIAN 237 Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F VT ER L EK +K F+ S+EL++PLT++ +T +L+ S Sbjct: 238 FTEVT-----ERVLNEK---------LKEDFIGIASHELKTPLTSLKAYTQVLQHRFKNS 283 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--A 659 + + I T ++ ++ ++LD+ T+ + L+ I LN L+ E+ +I Sbjct: 284 EDETSLNIINKIEHQVTRVVQMITNLLDVTTLQEKKLNLHIRDIDLNLLVTEIADAIQQT 343 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 TK+H RI ++ L + ADR+RL Q+ S ++SNA+ +S V + +N Sbjct: 344 TKVH----RI-ILQLAPLPTIPADRERLAQVISNMISNAIKYSPNADAVQVSTRIENDRV 398 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 IFSV ++G I VF RF ++ + +G+GLGL I + HGG + +S + Sbjct: 399 IFSVLDHGIGISPSELNQVFERFFRADGAKKSFQGLGLGLFICAQILEQHGGEIGATSKE 458 Query: 779 -EGVT 782 EG T Sbjct: 459 GEGST 463 >gi|237712780|ref|ZP_04543261.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262409729|ref|ZP_06086267.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22] gi|294808001|ref|ZP_06766778.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447192|gb|EEO52983.1| two-component system histidine kinase [Bacteroides sp. D1] gi|262352382|gb|EEZ01484.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22] gi|294444814|gb|EFG13504.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295084583|emb|CBK66106.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + V++ A +D V++ G I KS+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1786 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ V++T+ L E A + K F+ ++S+E+R+P+ IIG + L + Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712 + K I + + + + D RL Q+ +++NA+ F+ +G + +++ Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV+++G + E +F F R+ G GLGL+I + + L GG Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248 Query: 771 HVSISS 776 + + S Sbjct: 1249 KIGVES 1254 >gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM 273] Length = 967 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 14/224 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ ++S+E+R+P+ +IG DLL + L+ +Q +YV+ I +S LL ++NDIL Sbjct: 316 KGQFLANMSHEIRTPMNGVIGMADLLLET---DLDQEQQKYVQTIISSGRNLLKIINDIL 372 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQR 686 D + ++AG ++L + L +LL E+ + + + + + DG D QR Sbjct: 373 DFSKIEAGRLELEHEEFELAELLEELGCMLGPEAQAAGLELTLSIAPDGPT-RLKGDPQR 431 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPEDMCKSVFNR 741 L Q+ +L NA+ F+ +G VIL++ + FSV+++G IP+D S+F Sbjct: 432 LRQVLVNLLGNAVKFTHEGGEVILESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEP 491 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 F RR G GLGLSI + GG +++ S+ DEG T Sbjct: 492 FSQVDGSSVRRYGGTGLGLSISNHLVGRMGGRINVQSTLDEGST 535 >gi|325289943|ref|YP_004266124.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324965344|gb|ADY56123.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 464 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K +++KN F+ VS+ELR+PLT+I+G+ L+ + + + + I+ S L ++ Sbjct: 235 KKEQLKNDFISSVSHELRTPLTSIMGWAITLQNEQFQQKDMLKDG-LNIIAKESERLTHM 293 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G +KL+ I + L+ + + + + NI + L V+D Sbjct: 294 VEELLDFSKFVSGRIKLHNEPIHIVHLMEHIHKQLTPRAVRENINFSLCCPEDLPCLVSD 353 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 RL Q+F IL NA +F+ G +++LKA + + F++ ++G I + V +F Sbjct: 354 INRLKQLFINILDNAFNFTPAGGSIMLKAENFDKEIRFTISDSGCGISTEELPMVKEKFY 413 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 + R G+GLSI E + L G + I+S + TT+ +P E Sbjct: 414 KG--KSSRSKNGIGLSICEEIVVLMKGQLEINSELDQGTTVRITLPQGE 460 >gi|294634414|ref|ZP_06712950.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685] gi|291092124|gb|EFE24685.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685] Length = 932 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 11/224 (4%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + A KAD K++F+ +S+E+R+PL I+G LL L+ + YV+ I+ S Sbjct: 433 QARAAAEKADNAKSAFLAAMSHEIRTPLHGILGTAQLLAGQP---LSPRCRDYVQAINDS 489 Query: 617 STILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 LL ++ND+LD + ++AG + LN LL+ V + ++ + +R++ Sbjct: 490 GESLLAVLNDVLDYSAIEAGSHSVALNDEPFAPRQLLDSVLRLAEGRLQQRPLRLEHDYA 549 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 L +++ D +R+ QI +L+NA+ F+ +G ++L++ D + +V+++G I Sbjct: 550 AALPAWLQGDPRRIRQIVMNLLNNALRFTERG-VIVLQSGCDQTQWWIAVQDSGCGIDPA 608 Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++F FV +A RG G GLGL+I G +++SS Sbjct: 609 QQAAIFQPFVQLSARRG---GTGLGLAICRGLAQAMAGSLTVSS 649 >gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] Length = 424 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 22/241 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619 +RK ++I+ FV +V++EL++P+T+I GF + LK G++N+ +++E I + Sbjct: 194 VRKLEQIRTEFVSNVTHELKTPITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 250 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673 L L+NDIL L+ ++ + N L ++++ V Q+IA + NN+R +V+ Sbjct: 251 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL- 309 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 A+ R+ Q+ ++ N + ++ + +V + R++G + SVK+ G IP Sbjct: 310 ------MKANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 363 Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF +G+ RG+ GLGLSIV+ +NL+ G + ++S T +IP Sbjct: 364 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIPC 422 Query: 791 K 791 + Sbjct: 423 Q 423 >gi|254294725|ref|YP_003060748.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254043256|gb|ACT60051.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 859 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 18/249 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA + RK E+K+ F+ ++S+E+R+P++ ++G T L+ + L +Q++ V Sbjct: 472 RAAIASRDKARKLSEVKSRFLANMSHEVRTPMSGVLGLTSALEQT---PLTKEQNELVVL 528 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S ++N+++DILD A +D + + N+LL+ HE +++I Sbjct: 529 IAQSGAYMVNILDDILDFAQIDRDNITIRIDAFSPNELLSSTYAFFQKNTHEAG--LELI 586 Query: 673 SDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FS 722 D K + + D +R+ QI ++SNA+ F+ G + L+A D + F Sbjct: 587 LDSKFQNELVTLGDEKRIRQILFNLISNAIKFTPNGQ-ITLRAWCTQSDQVDTQCELHFE 645 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G + E +++F+ F +RR G+GLGLSI + ++ GG +S++S Sbjct: 646 VSDTGIGMDEKQMENIFDPFAQVDMTKRRRYGGLGLGLSICKQLLDAMGGAISVTSIPGS 705 Query: 781 VTTINCRIP 789 T + +P Sbjct: 706 GTNFSFYVP 714 >gi|291287635|ref|YP_003504451.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884795|gb|ADD68495.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1067 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+E K+ F+ +S+E+R+P+ ++G + L+ ++L KQ Y+ I +S+ +LL +V Sbjct: 417 ANEAKSEFLASMSHEIRTPMNAVLGLSYLMMQTEL---TGKQYDYISKIRSSANLLLEIV 473 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683 ND+LD + ++AG ++L + L D + + I + + N+ +++ D + + V D Sbjct: 474 NDVLDFSKIEAGKLELETDVMNLKDNIKRIAGIIEVTVSKKNVSVQLEIDENIPDYLVGD 533 Query: 684 RQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 R+ Q+ + + +NA F+ +G S +L ++ +V + G IP D +F Sbjct: 534 SLRITQVLNNLATNAAKFTEQGHIEISAFLLTKNKNYAKIRITVSDTGIGIPTDKIPILF 593 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG 780 + F + Q++ G GLGLSI + +N +++ S + EG Sbjct: 594 DSFTQVKRKNQKKQSGSGLGLSISKKILNAMESDITVESKEGEG 637 >gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1177 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T +R E+ L + E A+ K+ F+ +S+E+R+P+ +IG ++L + LN Sbjct: 767 DITQRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLET---PLN 823 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++Q++Y+ + + LL L+++ILDL+ ++AG M L L+ ++ + + Sbjct: 824 AEQTRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQAL 883 Query: 664 ENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 +N+ +++ + + + D R+ Q+ +L NA+ F+ +G + + N Sbjct: 884 NHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGGVSLHLSLDANQHIHT 943 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V + G I + +F+ F RR G GLGL+I F L GG + + S + Sbjct: 944 RVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVESIEG 1003 Query: 780 GVTTINCRIP 789 +T + +P Sbjct: 1004 QGSTFHMTLP 1013 >gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 487 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 552 ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--- 605 E L E N+ L +A ++++ F ++S+EL++PLT I+ LL LN K Sbjct: 204 EIKLKESNKMLGEALEYNKLRTEFFSNISHELKTPLTIILSALQLLNEKNSTHLNEKINE 263 Query: 606 --QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +Y++ I +S LL LVN+I+DL +D+ + + + +++ S+A + Sbjct: 264 NTEKKYIDIIKQNSYRLLRLVNNIIDLTKIDSDFFDIQLKNLNVVEVVENTVLSVAEYIK 323 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N I+I +D + D + +I ++SNA+ F+ + + I SV Sbjct: 324 SNGIKITFDTDVEEKIMAIDIDQFERIILNLISNAIKFAKPEGNIWVSLYDKQDHLIISV 383 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 K++G IP+D +F RF + + + G G+GL+IV+S + HGG ++++S+ Sbjct: 384 KDDGKGIPKDKLPIIFERFYQIDKSLSRECEGSGVGLAIVKSLVEKHGGKITVNST 439 >gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] Length = 1547 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 16/266 (6%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHV 576 +D ++E+ + PL N T+ FV+ + +AE+AL EA +A K+ F+ + Sbjct: 819 FNDDIIEW-LKPLMN--TVGQFVHGARGIHARQKAEKALVAAKEAAEQAAHAKSDFLAMM 875 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 S+E+R+PL ++G LL ++L + +Q + + S SS LLN++NDILD + VDAG Sbjct: 876 SHEIRTPLNGVMGMLSLLNRTQL---SDEQRRKLTIASHSSNTLLNIINDILDFSKVDAG 932 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695 ++L L L E +S+A + E ++ + + +D D R+ Q+ + ++ Sbjct: 933 KIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTDINTPMVCGDPGRIRQVLANLV 992 Query: 696 SNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750 NA+ F+++G ++ L +D+ F SV + G I D +FN F V + + Sbjct: 993 GNAIKFTAEGEVLVRCALVPQKDDLIFQVSVVDTGIGIENDKLDELFNPFTQVDASTTRE 1052 Query: 751 RRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I + L GG ++ S Sbjct: 1053 YGGTGLGLAICKKLCVLMGGDIAAHS 1078 >gi|237714341|ref|ZP_04544822.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445505|gb|EEO51296.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1343 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 780 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 839 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 840 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 897 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 898 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 957 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 958 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1015 Query: 773 SISSSDEGVTTINCRIPS 790 +++S T +P+ Sbjct: 1016 TVASEPAQYTEFKVTLPA 1033 >gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] Length = 810 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 24/276 (8%) Query: 539 MLTFVNVTDSVR---AERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588 ++ F+++TD +R L + EAL+ +A+ K+ F+ +S+E+R+P+ II Sbjct: 255 LVIFIDITDVTELREMQRKLIAQTEALKDALSVAEQANRAKSDFLSRMSHEIRTPMNAII 314 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G T + + + +E I SS L+ L+ND+LD++ +DAG M++++ L Sbjct: 315 GMTTI--AAAYIEDRKRVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLE 372 Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++ + I + + + V + D + D RL QI +LSNA+ F+ KG T Sbjct: 373 TIVESITSIIYPQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGT 432 Query: 708 VILKAA---RDNGD--FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLGLSI 760 V L+ R G F+V + G + +D +F+ F + GQ G GLG+ I Sbjct: 433 VRLRIRQMWRRAGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYGGTGLGMPI 492 Query: 761 VESFINLHGGHVSI-SSSDEGVT---TINCRIPSKE 792 ++ L GG +S+ S D+G T ++ +P +E Sbjct: 493 TKNLATLMGGTISVKSKPDQGTTFTVELDFDLPEQE 528 >gi|161367622|ref|NP_286929.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 EDL933] gi|162139802|ref|NP_309175.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. Sakai] gi|195935251|ref|ZP_03080633.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. EC4024] gi|254792250|ref|YP_003077087.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. TW14359] gi|291281991|ref|YP_003498809.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. CB9615] gi|17368203|sp|P58356|TORS_ECO57 RecName: Full=Sensor protein torS gi|254591650|gb|ACT71011.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli O157:H7 str. TW14359] gi|290761864|gb|ADD55825.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. CB9615] Length = 914 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM 3645] gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM 3645] Length = 499 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 130/235 (55%), Gaps = 14/235 (5%) Query: 564 KADEIKNS-FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620 KA + +N+ FV VS+E+++PL I + +LL G +Q+ ++++ I++ + L Sbjct: 263 KAIQRRNAEFVSAVSHEMKTPLAGIKAYVELLAD---GEAEDEQTRDEFLQVINSQADRL 319 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGS 679 L++++L+LA ++AG++ +N LN+LL E + + + NI I +S LG Sbjct: 320 QRLIDNLLNLARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLISDLSPMYLGV 379 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738 V DR ++Q +LSNA+ ++ V L++ + + +F V++ G + PED C V Sbjct: 380 LV-DRDMIMQAAINLLSNALKYTPDNGKVTLRSRLQDREVVFEVEDTGVGLSPED-CDRV 437 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPS 790 F +F + Q+ G GLGL + + + ++HGG ++++S +T R+P+ Sbjct: 438 FEKFY-RVKKDQKMASGTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLPT 491 >gi|301023116|ref|ZP_07186923.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] gi|300397237|gb|EFJ80775.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] Length = 904 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture clone pWThLOV] Length = 1204 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 12/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T+ ++T AE+AL +K +A A K F+ +S+E+R+PL +IGF+ LLK S Sbjct: 801 TYSDITRLKEAEKALRDK-QAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLLKLSATN 859 Query: 601 SLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + S Y +++ + LL L+ND+LDL V+ G + +N TI L + + + + Sbjct: 860 AQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIEQALELL 919 Query: 659 ATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 A H + + D ++ V AD QRL Q+ I+SNA+ ++ V L Sbjct: 920 APLAHASAVSF----DNRIDEDVLVRADAQRLRQVLINIISNAIKYNRPDGVVRLTLGDR 975 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773 GD I +++ G + D +F F G GLGL I + I+ G + Sbjct: 976 QGDAIDVLIEDTGEGLRPDQLARLFQPFERLGRETSPIEGTGLGLIIAKRLIDEMKGSIE 1035 Query: 774 ISS 776 +SS Sbjct: 1036 VSS 1038 >gi|167582210|ref|ZP_02375084.1| sensor histidine kinase/response regulator [Burkholderia thailandensis TXDOH] Length = 651 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 32 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A + H +R++ Sbjct: 85 SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSGMLAVQAHRKGLRVR 144 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +GS + A D + +V + Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRATGAVDGSVEIVATVVD 204 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F FV A RG RR G GLGL+I L GG V+++S + T Sbjct: 205 TGIGIAADELRRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263 Query: 783 TINCRI 788 T RI Sbjct: 264 TATARI 269 >gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 981 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 5/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR+PL + T L++ + + + + + S Sbjct: 747 NSARKELEQRKDDFISMASHELRNPLAAVKMQTQLVQKRLERQSHHEAATALSRVEGSVK 806 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ ++LD++ + AG ++ + L+ LL+EV ++ + I V+ Sbjct: 807 QLERLIGELLDVSKIQAGRLEYQQEMVDLDALLHEVADTMQQIHTTHTI---VVRGTAPC 863 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S V D+ RL Q+F+ ++SNA+ +S TV + + V+++G IP + + Sbjct: 864 SLVGDKDRLGQVFTNLISNAIKYSPGAETVEMDLSTSAETVTIRVRDHGLGIPREQRDKI 923 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF QR G+G+GL IV + HGG +++ S +T +P + Sbjct: 924 FDRFYRVTDPKQRAIPGLGMGLYIVAEIVKSHGGTITVESQVGTGSTFTVTLPKR 978 >gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 726 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 106/485 (21%), Positives = 200/485 (41%), Gaps = 44/485 (9%) Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370 +L L + ++ ++ L+ N ++ L + A+ P + L E R A + Sbjct: 239 VLAALPHGVCVYGADQRLRMANAAYDRL----MPEAASRP-GEHLREICRRA------MA 287 Query: 371 WKTWKENIFSVYK-----SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425 E + ++Y+ + HK H +G + + P GG I + ++T Sbjct: 288 GFADDEALEAIYRRQLDFARPAHKRVRH--DGTAISGLTAPLPDGGHISVVSDITALHQA 345 Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---RN 482 E + +D + +GV +F R+ ++N + ++PGT + R Sbjct: 346 EEAARQRAALLQAMVDSMRQGVCLFDRQHRVVVANALAARMIGLAPEEMAPGTPLQTLRR 405 Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDSVLEYSIIPLPN 535 + + +D + I SL+ L+L + V+E S P P+ Sbjct: 406 LQYERGEFGQGADAEGYYEEI---------SLEPGLKLDHFLRTRPNGQVIEMSTDPTPD 456 Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 + + +VT+ RA L +A+ KN F+ +S+ELR+PL +IGF++ L Sbjct: 457 GGHVRVYTDVTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGFSEALA 516 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 G +++ I + LL L+++IL++A AG +++ + L +L Sbjct: 517 ADPSG---PDTAEFATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPSVLEGAA 573 Query: 656 QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-A 713 + + I + + L A+ +RL Q+ +LSNA+ F+ G V L+A A Sbjct: 574 RLMRQSAEAAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEVALEAEA 633 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771 G V+++G I + F FV +H + G GLGL + + G Sbjct: 634 LPGGAVEIRVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALAQSMGAT 693 Query: 772 VSISS 776 +++ S Sbjct: 694 LALES 698 >gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 432 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 18/238 (7%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---------------SKLGS 601 E+ L +A++ K F+ VS+ELR+PLT+IIGF +++ KL Sbjct: 176 ERTRELARANKAKTEFLSIVSHELRTPLTSIIGFAKIIRKKLAERVFPAVDRDRDPKLCK 235 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + + ++ I A L L+ND+LDLA ++A ++ + + L S + Sbjct: 236 EMDRIGKNIDIIEAEGERLTALINDVLDLAKLEANKVEYRMEPLAPAEFLRPAMDSSSAL 295 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + L + DR RL+Q+ + SNA F+ +GS V +A Sbjct: 296 FQASEVLFLNEVGPDLPQVMGDRHRLIQVMVNLFSNAAKFTRQGS-VTCRAELVGAHLRV 354 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 SV + G+ IP++ S+F++F+ R G GLGL I I H GH+ + S+ Sbjct: 355 SVVDTGAGIPQEQQTSIFDKFIQGQESLTDRPTGTGLGLPICRQIIKDHQGHLWVESA 412 >gi|154303265|ref|XP_001552040.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10] gi|150854944|gb|EDN30136.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10] Length = 2129 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 15/223 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K F+ ++S+E+R+PL I G L+ + +LN +Q Y I +S++ LL Sbjct: 1408 LKEAMESKGKFLSNMSHEIRTPLIGISGMVSFLQDT---TLNDEQLDYTNTIQSSASSLL 1464 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 N++NDILDL+ VDAG+MKL+Y L+ EV + ++T + + I D + V Sbjct: 1465 NIINDILDLSKVDAGMMKLSYEWFHTRSLVEEVNEMVSTMAITKRLELNYIVDVDVPEMV 1524 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIP 731 D+ R+ Q+ ++ NA+ F++ G + D +S+ + G Sbjct: 1525 KGDKFRIRQVLLNVIGNAIKFTTVGEVFTRCRVYTDADSPPLVNEIMLEYSIVDTGRGFT 1584 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ +F F + + Q G GLGL I + LH G + Sbjct: 1585 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVQLHNGKM 1627 >gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 844 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 182/389 (46%), Gaps = 51/389 (13%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATC------- 487 + I+ +SE ++ GR+ + N +R+++ E L PG + AA Sbjct: 455 DAIESVSEAFVLWDRQGRLLMCNRNYRNVFNLEPKLLKPGAPRNEVNRFAALAIKHDQPA 514 Query: 488 --------------------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527 S G + AA IT+ ++ ++ + L++ L+ Sbjct: 515 PDGAKGVREAELNDGRWIQISERRTAEGGLVMTAADITAIKNQEEARR-----LNEEQLQ 569 Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 +++ L +Q L + A + EK +A A++ K+ F+ ++S+ELR+PL I Sbjct: 570 HAVAGLERSQEQLAEL-------ARKYEMEKVKA-EGANKAKSEFLANMSHELRTPLNAI 621 Query: 588 IGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 GF++++ G L ++ + Y I S LL L+NDILD++ ++AG M L + + Sbjct: 622 NGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNLKFEPLS 681 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 L D+ + + + + ++++ I L AD + + Q+ +LSNA+ F+ + Sbjct: 682 LEDVTEDAVRLVRNRAEAAGLKLE-IDFPPLPEVEADYRAVKQVLLNLLSNAIKFTPRAG 740 Query: 707 TVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760 ++++A RD G+ + SV + G I + + F V + H +G GLGL++ Sbjct: 741 RIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGTGLGLAL 800 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 +S + +H G + ++S+ TT++ +P Sbjct: 801 TKSLVEMHDGALEMTSTPGEGTTVSFILP 829 >gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 902 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 558 KNEALR-KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + ALR + +E+++ + VS++LR+PL I G + LL + + + + + V + Sbjct: 655 RRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVAD-PAVRRELVATVVEE 713 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L LV+D+LD+ +D+G+++ + L +++ + + + I + D Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L S D + Q+ +L NA ++ G+ + + A R+ G + V + G IP + Sbjct: 774 LLSI--DPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEEE 831 Query: 737 SVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF HR R RGVGLGL I + HGG ++ +S G + +P Sbjct: 832 RIFERF----HRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883 >gi|294672859|ref|YP_003573475.1| sensory box histidine kinase [Prevotella ruminicola 23] gi|294473745|gb|ADE83134.1| sensory box histidine kinase [Prevotella ruminicola 23] Length = 925 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 136/270 (50%), Gaps = 12/270 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN--EALR--KADEIKNSFVQHVSYELR 581 L+++ +P ++ + + + +A+ EK E++R + + +KN+F+ ++S+E+R Sbjct: 657 LQFNFVPTYKDGQIVEYFGLIRDISDIKAVEEKLALESVRAQEVETVKNAFLHNMSHEIR 716 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PL ++GF++L ++ ++ ++ I SS LL L+NDIL L+ +DAG++ ++ Sbjct: 717 TPLNTVVGFSELF---EMDHSPEDEAVFINEIKESSASLLKLINDILFLSRLDAGMITIS 773 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 I L + S+ + + + K D I +KIL+NA+ Sbjct: 774 PQPIDLASIFEGRCSSVWDNHRQPGVEYIAQNPFKRLIVEIDEPNASMILNKILTNAIQH 833 Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 ++ GS V+ + I SV++ G I ++ + +F+RFV+ G G GLGLSI Sbjct: 834 TTSGS-VLARYEFIADRLIVSVEDTGCGIKQEDIEHIFDRFVT----GANNGAGLGLSIC 888 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + GG + + S++ T + IP K Sbjct: 889 HELVEYMGGQIELKSTEGKGTMVWFSIPCK 918 >gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 659 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + E A ++K+ F+ ++S+E+R+P+ I+G LLKT+ L+++Q +YV+Y Sbjct: 285 ALLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTT---DLDAEQLEYVDYA 341 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 SS+ L +L+ DILDL V+AG ++L + + + ++ ++Q + E + + I Sbjct: 342 LKSSSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFDI 401 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729 S + D RL Q+ ++ NA+ F+ G V L R +F V++ G Sbjct: 402 SPEVPETVDGDALRLQQVLVNLVGNALKFTEHGRVDVEVFLNDKRAKS-LLFKVRDTGIG 460 Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I +D+ +F F+ +++ +G GLGLSI + + + GG + +SS Sbjct: 461 IADDIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSS 509 >gi|76810007|ref|YP_333196.1| sensor histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|76579460|gb|ABA48935.1| sensor histidine kinase/response regulator [Burkholderia pseudomallei 1710b] Length = 654 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 32 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 85 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 144 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 204 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 205 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263 Query: 783 TINCRI 788 T RI Sbjct: 264 TATARI 269 >gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1305 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 12/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + + AL E N A E K+ F+ +S+E+R+P++ I+ +L++ + Sbjct: 648 IDITQAKEQQVALMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPH---AQ 704 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q +S S LLN+VND+LD + ++AG + +N S VL+DL++ + Q + Sbjct: 705 KPELRQIHHNLSQSGLNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQPHSIHA 764 Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717 ++ + + D + +++ D RL Q+ + +L+NA+ F++ G + ++K Sbjct: 765 NQKEVSFTLWLDPAVAHYLSFDDFRLTQVLNNLLNNAIKFTTMGNIHLAVDVVKETNTEQ 824 Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F++ + G I PED+ + +F FV RR G GLGLSI + L G + Sbjct: 825 TLAFTIHDTGIGIKPEDLSQ-LFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMDGDIHA 883 Query: 775 SSSDEGVTTINCRIP 789 +S T+ +P Sbjct: 884 TSEVGKGTSFTVIVP 898 >gi|197335684|ref|YP_002156922.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri MJ11] gi|197317174|gb|ACH66621.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri MJ11] Length = 788 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 19/251 (7%) Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E AL+KA K +F+ +S+ELR+PL I+G + +L S+ L+ +Q Y Sbjct: 264 RNITERKEYEDALQKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSR---LDDEQHNY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S+ L N+ NDI+D+ D ++L + + E++ + +R Sbjct: 321 MRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFISFVTEMENISGLMAEQKGLRF 380 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L ++ D RL Q+ ++ NA F+ +G V+ +A +D+ + F +++ Sbjct: 381 DLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVVMSVSADIHQDSAEITFEIED 440 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSS-DEG 780 G IPE+ ++VF + +G+ G G+GL++ + INL GG ++++S D G Sbjct: 441 TGIGIPEEELENVFAMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTSEVDFG 499 Query: 781 VT---TINCRI 788 T TIN + Sbjct: 500 STFMVTINVPL 510 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 174/370 (47%), Gaps = 39/370 (10%) Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL-WKTEENRLSPGTHI--- 480 ++ +Y TL +D S+ + V D RI+ NP SL + E+ L G + Sbjct: 233 VQQEYKTL-------MDSASDLILVHDRDLRIRYVNPVVESLAGQPPEHYLGQGIEVIIP 285 Query: 481 -RNIAATCSRYYNE--SDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPN 535 R +A + + + G D ++I D R + +Q L + D+ + L Sbjct: 286 EREVAGVFNSHLRQVLQSGKD--SSISFQLDSVRHKRHMQARLTPVQDAAGSMGSV-LAV 342 Query: 536 AQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 + + F + D +R A+R E N A K+ F+ ++S+E+R+PL ++G + L Sbjct: 343 VRDITRFKRLEDRLRQAKREAEESNRA-------KSEFLANMSHEIRTPLNAVLGLAERL 395 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 + ++ +YV I S+ LL +++DILDL+ ++AG + ++ L LL +V Sbjct: 396 S---FITEPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKV 452 Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710 + E + + V + + +AD + Q+ + ++SNA+ F+ +GS I Sbjct: 453 VSPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEEGSVEISVTN 512 Query: 711 --KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 + +RD G + V + G IP DM +FN F + +++ G GLGL+I + + Sbjct: 513 DNRDSRDMG-LLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVE 571 Query: 767 LHGGHVSISS 776 + GG + + S Sbjct: 572 MLGGRIWVES 581 >gi|325925186|ref|ZP_08186599.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118] gi|325544440|gb|EGD15810.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118] Length = 719 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 17/248 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA+T R A++ K+ F+ ++S+E R+PL + G T++L T++ L+++Q + + Sbjct: 166 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 222 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670 I AS+ LL+LV ++LD++ ++AG ++++ L +++ V + + + I+ Sbjct: 223 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYAIE 282 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724 V +D D L Q+ +L NA+ F+ G V+L+ AR +G+ F V+ Sbjct: 283 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARVSGNGADTMRLRFDVE 340 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G +P DM +F F A G R G GLG +I + + GG + + + G Sbjct: 341 DSGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGG 399 Query: 782 TTINCRIP 789 + +P Sbjct: 400 SVFWFELP 407 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gi|300075855|gb|ADJ65254.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 939 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 8/227 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT+++G D+L + L+ IS S ++ L Sbjct: 703 ESERLRNSLLSAISHDLRTPLTSLVGSADVLAAN--ARLDDDARAMARTISEQSQKMVGL 760 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +N++LD+A + AG++ LN L +L + +A + + ++ + L D Sbjct: 761 MNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPL--LRVD 818 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVF 739 L ++ + ++ NA+ +S G+ + + A ++GD VK + G P M + F Sbjct: 819 AVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAF 878 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 +F + GVGLGL+I + I H G + I+ + G C Sbjct: 879 EKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVC 925 >gi|302381628|ref|YP_003817451.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192256|gb|ADK99827.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 524 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 20/226 (8%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F++ +S+E+R+PL +IG LL ++L + Q Y E S+ LL LVND+LD Sbjct: 24 DPFLRLMSHEMRTPLNGVIGMLGLLTRTRL---DGAQRAYAEAARDSAEHLLGLVNDLLD 80 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRL 687 A ++AG ++ + + + L+ V + ++ + H+ + I V +D +AD RL Sbjct: 81 YARLEAGKLEFDLAPVDPEGLVRGVAELLSPRAHDKGLEIVWSVAADAP--DILADEGRL 138 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742 Q+ + NA+ F+ +G V + R G F V + G IP + +F F Sbjct: 139 RQVLFNLAGNAVKFTDQGG-VRISVERAGGSDTRPTLAFVVDDTGPGIPAEARARIFEEF 197 Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTT 783 S+A R G GLGL++V+ GG V++ D G T Sbjct: 198 GHVDASDATR--HGGAGLGLAVVQKLARAMGGAVTVEDRPDAGPDT 241 >gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 770 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER LT E A+ K+ F+ +S+ELR+PL I+G+ +L+ +L+ Q Q Sbjct: 290 AERTAELTIAKEQAESANRAKSDFLSSMSHELRTPLNAILGYAQILRLHN--NLSDIQRQ 347 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ + S LL L+NDILD+ ++A M + + L L+ +V + E ++ Sbjct: 348 QLDIMRNSGEHLLTLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQ 407 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--SVKN 725 + L ++V D ++L QI +LSNA+ ++ +GS + + GD +F V + Sbjct: 408 FHYEPETPLPAYVHGDERKLRQILLNLLSNAVKYTRRGSVTMRVSYGRAGDGLFRCEVAD 467 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G IP D +F F ++N +G R G GLGL+I + + L G + + S +T Sbjct: 468 TGIGIPADKLGVIFEPFTQLTNDRQG-REGTGLGLNITKRLLTLIQGTMGVESIPGKGST 526 Query: 784 INCRIP 789 +P Sbjct: 527 FWLEVP 532 >gi|254830992|ref|ZP_05235647.1| hypothetical protein Lmon1_06518 [Listeria monocytogenes 10403S] Length = 459 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELEKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L ++ Q E + I + Sbjct: 281 LSEETTRLSSLSKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D ++ D + L Q++S +L+NA+ F+ +G + ++ D + V+++G I + Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDMTNVFVEVQDSGVGISK 398 Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 DM K +F+RF +N R + G GLGLSI + I LH G V++ SS E TT ++P Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457 >gi|119387834|ref|YP_918868.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] gi|119378409|gb|ABL73172.1| integral membrane sensor signal transduction histidine kinase [Paracoccus denitrificans PD1222] Length = 901 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L NE L+ D++K+ F+ V++ELR+PLT+I T+L L T + ++ +++ I Sbjct: 656 LRAANEKLKSLDQLKDDFMSSVTHELRTPLTSIRALTELMLDTPDIQP--QEREEFLNII 713 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + S L LVN +LDLA +++G+ + + + + + L+ +S A E + Sbjct: 714 LSESERLSRLVNQVLDLAKIESGMAEWHNTDVDMKALIVAALRSTAELFRERGAEVLADL 773 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSI-P 731 ++ +AD RL Q+ +LSNA F +G + A R GD + +V++NG + P Sbjct: 774 PEQVPMVLADPDRLTQVLVNLLSNAAKFVPEGRGRVEVALRHRGDELVVTVRDNGPGVAP 833 Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 ED +VF++F G R G GLGL I + GG + + S Sbjct: 834 EDQA-AVFDKFRQGGEAGNRPPGTGLGLPISRQIVVNLGGRMWLDS 878 >gi|228956707|ref|ZP_04118494.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802972|gb|EEM49803.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 314 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++++E + + +S+++R+PLT+IIG+ D LK S KQ +Y++ + S L + Sbjct: 80 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV++I ++A +DA L + +++ E ++ ++NI+++V+ +A Sbjct: 139 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPESTCPIIA 198 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D L++I ++ NA+ + G T+ ++ + ++ + + G IP+ +++F R Sbjct: 199 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNIFERM 258 Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G GLGLSI ++ + +GGH+ + S+ TT IP Sbjct: 259 YRSEQSRNSSYGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307 >gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] Length = 591 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 176/356 (49%), Gaps = 37/356 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWD 498 +++GV +G + + NP F +W+ E E LS S+ + Sbjct: 264 MADGVITLNQEGEVVVINPPAEHFLQVWQEEKEVELSKKL--------------PSELVE 309 Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 LF ++ S ++++ ++ L+ + VL + PL N QT + +V R +TE+ Sbjct: 310 LFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE 358 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 R+ ++++ F+ +VS+ELR+P+ + G+++ + + + +++V+ I S Sbjct: 359 ----RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESV 413 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L LVN++LDLA +++G ++L+ + ++ + ++ + + +++ V + Sbjct: 414 RLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIE 473 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + D R+ Q+ + ++ NA+ ++ G V L N F V+++G+ IPE+ + Sbjct: 474 QYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFL 533 Query: 739 FNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF RG++ G GLGL+I ++ + H G + +SS T + +P++ Sbjct: 534 FDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIFSVYLPNR 589 >gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 740 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ E L + EA + K F+ ++S+E+R+P+ I+G L + Sbjct: 503 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 559 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q +YV I+ S+ LL ++NDILD + ++AG + + L+D+L+ V ++ K Sbjct: 560 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 619 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719 E I + D + + D RL Q+ + NA+ F+S+G V+ + ++ N Sbjct: 620 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 679 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 + F+VK+ G I +D +F+ F N+ Q G GLGLSI + + L GG Sbjct: 680 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGG 735 >gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] Length = 784 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IP++ +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|90962135|ref|YP_536051.1| two component system histidine kinase [Lactobacillus salivarius UCC118] gi|90821329|gb|ABD99968.1| Two component system histidine kinase [Lactobacillus salivarius UCC118] Length = 492 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E NE +++ +E + F ++E+R+PLT I G + L + + ++S +E Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVN+ LD + +G ++L+ + + +LN + + + K + + ++ Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 366 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + KL + AD RL+QI I NA+ F+ G + + A + N + I + +NG + E Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424 Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++++ R+ + + + G GLGLSIV + LH G V++ S + TT R P Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484 Query: 790 SK 791 +K Sbjct: 485 NK 486 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 36/323 (11%) Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM------ 539 TC + N D+ +T+F D ++G LS ++Y P + + Sbjct: 69 TCKKLKNNPISKDIPIIFMTAFADINHKIKG----LSLGAVDYIPKPFEQEEVLARVRLH 124 Query: 540 LTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597 L +T ++ + A L E E A++ K+ F+ ++S+ELR+PL I+G+ +L + + Sbjct: 125 LKLYFLTKTLAEQNAYLQEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDA 184 Query: 598 KLGS------LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L + L +KQ + ++ I S + LL L+NDILDL+ ++AG M L + L L Sbjct: 185 ALAASKGERNLTAKQLEGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFL 244 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI- 709 EV I + E NI ++ + L + V AD +RL Q+ +L NA+ F+ +G+ Sbjct: 245 EEVVGIIRMRASEKNIVLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQGNVTFN 304 Query: 710 -----------LKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RG 753 L +D+ F V + G I +++F F R G Sbjct: 305 VGVIEDQNPTSLDQGKDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDSKYRAAG 364 Query: 754 VGLGLSIVESFINLHGGHVSISS 776 GLGL+I + G +++ S Sbjct: 365 TGLGLAISRQLVEFMGSQLNVKS 387 >gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116] Length = 641 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 10/219 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ IIG LL +KL + +Q +V I++SS L+ ++ Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIINSSSNSLMVII 296 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 +DILD + ++AG ++L +T L DLL+EV + K + +++ D +L V D Sbjct: 297 DDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ S +LSNA+ F+ +G ++ + D F V ++G I ++ ++VF Sbjct: 357 MGRLKQVLSNLLSNAVKFTERGHVKLMVSLVSRKTDIASVHFRVVDSGIGIAKENQQTVF 416 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F R+ G GLGL+I S + + GG + ++S Sbjct: 417 EKFQQADGSTTRKYGGTGLGLAICNSLVEVMGGEIRLTS 455 >gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax borkumensis SK2] gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax borkumensis SK2] Length = 867 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 10/222 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R + K+ F+ +S+E+R+PL +IG +LL+ + + +Q +Y+ I ++ L Sbjct: 364 RAESQAKSLFLARMSHEIRTPLNGVIGLAELLRETD---PSPRQQEYISLIDSAGRTLTA 420 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681 L+ND+LD A ++AG ++L L LL E Q +N + + D + S V Sbjct: 421 LINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSDVV 480 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKS 737 D RL QI ++ NA+ F+ G V+ L R G+ + FSV + G + + Sbjct: 481 GDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVEQAQ 540 Query: 738 VFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777 +F RF ++A+ QR G GLGLSI + L GG + + S+ Sbjct: 541 LFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSA 582 >gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1048 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 126/243 (51%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 F +++ AE+AL +A A+ K+ F+ ++S+E+R+P+ +IG + + L+T Sbjct: 409 FRDISSQKEAEKALVTARQAAEAANRTKSDFLANMSHEIRTPMNAVIGLSHICLQT---- 464 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L KQ Y+E + S+ LL ++NDILDL+ +++G +++ L ++L+ + + Sbjct: 465 ELTPKQRDYLEKVHNSAHSLLGILNDILDLSKIESGRLEVEEIPFNLEEVLDRLHTLVDA 524 Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 ++ ++ K+ ++ + D RL Q+ + ++ NA+ F+ +G + A + Sbjct: 525 RIAAKPLQFKLDLPPEVPVNLRGDPLRLGQVLTNLVGNAVKFTEEGEIAVTVAVVAEAEQ 584 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+V++NG + ++ C +F F R+ G GLGLSI + L GG + Sbjct: 585 EITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTTRKYGGTGLGLSISRQLVELMGGEIR 644 Query: 774 ISS 776 + S Sbjct: 645 VES 647 >gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 123/221 (55%), Gaps = 10/221 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 ++K ++I++ FV +VS+EL++PLT+I GF + LK G++ K+ +++ I Sbjct: 339 IKKLEKIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIEDKEIAGKFLNIIEVEVER 395 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+ L+ND+L L+ ++ +++ + + ++L E + + K NI++++ D KL Sbjct: 396 LVRLINDLLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKLKM 455 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + + L QIF ++ NA+ ++ + VI++ R + VK+ G IP++ + +F Sbjct: 456 KI-HKDWLKQIFINLIDNAIVYNRENGEVIIEVERLDEKIAIRVKDTGIGIPQNEIERIF 514 Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777 RF +G+ R G GLGLSIV+ + L+ G + + S Sbjct: 515 ERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSE 554 >gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] Length = 966 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA E +A R K++F+ +S+E+R+P+ ++G LLK + L+ +Q YV+ Sbjct: 458 RARQEAEQASRA----KSAFLATMSHEIRTPMNGVLGTARLLKDT---GLDRQQGHYVDV 510 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S T LL ++ND+LD + ++AG +++ L ++++ KQ + + E +++++ Sbjct: 511 INRSGTGLLAILNDVLDYSKIEAGHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYF 570 Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSS 729 + + F D R+ Q+ + ++ NA+ F+ KG+ I A G +F V + G Sbjct: 571 IESDVDKFWFGDMTRIGQVLNNLVGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVG 630 Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I E +++F+ F ++ + G GLGL+I + + GG + + S Sbjct: 631 ISEQEQQTLFDAFTQASGGLSSKGGTGLGLAISKRLVEAMGGEIHLES 678 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 139/288 (48%), Gaps = 26/288 (9%) Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 ++YSI P+ + + ++T+ R E+ L + E A K+ F+ ++S+E+ Sbjct: 472 IDYSIKPVEDESGNAIMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEI 531 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ II ++LL ++ K Y+ I+ S+ LL ++NDILD++ ++AG + L Sbjct: 532 RTPMNGIIAASELLSNE---DISDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDL 588 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699 + D+++++ + + I + V D ++ + D RL QI ++SNA+ Sbjct: 589 EIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAV 648 Query: 700 DFSSKGSTVILKA------ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 F+ KG +I+ + ++G+ F +K+ G I + + +F F S A Sbjct: 649 KFTKKGGIIIVGVKELENRSAESGEVKLRFFIKDTGIGIAHENIEKIFEPF-SQADASTT 707 Query: 752 R---GVGLGLSIVESFINLHGGHVSISSSDE-----GVTTINCRIPSK 791 R G GLGL I + + + GG + + S E T I R P K Sbjct: 708 RNYGGTGLGLCICKQLVEMMGGEIRVESEPEKGSTFSFTAIFHRQPKK 755 >gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1430 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 14/260 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ + + LT+ ++ A E K+ F+ ++S+E+R+PL I+ +L + ++G Sbjct: 773 VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 832 Query: 601 SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + Q + +S S+ LL++VNDILD + ++AG + L+Y L+ L V Q A Sbjct: 833 Y----EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 888 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAAR 714 + H ++ K D +L V D R+ Q+ + +LSNA+ F+ G + +L Sbjct: 889 RQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFTEYGTVGLAAKLLDLDG 948 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 + F V ++G I E+ +++F FV A G R G GLGL+I + I GG Sbjct: 949 EQQQICFEVFDSGIGISEEHIRNLFQPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGS 1007 Query: 772 VSISSSDEGVTTINCRIPSK 791 ++++S +T + +P K Sbjct: 1008 LNVTSKINIGSTFSITLPLK 1027 >gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 155/355 (43%), Gaps = 30/355 (8%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500 D + V F P + +N A+ W + + G H R + NE Sbjct: 554 DAVPALVGYFDPQLYCRFANAAYLEWWGLRPDEVV-GLHARELIGDEMFRRNEP------ 606 Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT------MLTFVNVTDSVRAERA 554 ++ + E LQ L S+ E I +P+ Q ++ ++T+ AE+ Sbjct: 607 -SMRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGFIVVVSDITEIKVAEQQ 665 Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + N L A K++F+ ++S+E+R+P+ IIG T L+ SL Q Sbjct: 666 MAALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSL---QR 722 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + I +++ LL ++ND+LDL+ +DAG + L + L+++L+ + + +E + Sbjct: 723 ERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANEKGL 782 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSV 723 + + +D D RL Q +L+NA+ F+ G +L R F V Sbjct: 783 ELVLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHAGWVRLRGELLAEDRQRVQVRFEV 842 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G I + S+FN F RR G GLGL++ + + L GG + + S Sbjct: 843 QDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGVRS 897 >gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2] gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2] gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2] Length = 499 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S L+ L++DILDL+ +++ +K +S LN L+ ++++ A K + I IK Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SGIEIKS 374 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGS 728 + + D RL Q+ ++NA F+ KG L N IF V++ GS Sbjct: 375 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGYIYFGYTLDNRNANSVQIF-VEDTGS 433 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ +F+RF Q G GLGLSI ++ + G + + S Sbjct: 434 GIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDIFVES 479 >gi|254457460|ref|ZP_05070888.1| sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207086252|gb|EDZ63536.1| sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 645 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 124/224 (55%), Gaps = 12/224 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +++ + +K+ F+ ++ +E R+P+ I+GF +LL+ + +L+ QS+Y++ I+ SS L+ Sbjct: 151 IKEVENLKSKFLSNIGHEFRTPMNGILGFIELLQQT---NLDKNQSEYLQMINRSSKSLM 207 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 + + +LDL+ + G +KLN S ++ + ++ + + + + D KL S + Sbjct: 208 SNIETLLDLSQMQGGRLKLNPSLFSISQEMEKIAYNYGVVGRDKGVSVFSFIDPKLPSEI 267 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD--FIFSVKNNGSSIPEDM 734 AD +++ Q+ + ++ NA+ F+ +G ++++ + NGD FSVK+NG I + Sbjct: 268 NADFRKIKQVMNSLIQNAIKFTPRGGRIVVEVKLLKKQINGDCSVSFSVKDNGKGIANEQ 327 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + F++ + +R GVGL LS ++L G + I S + Sbjct: 328 IAMITEPFIAGSQADERLGVGLSLS--HGLVSLLGSELKIQSEE 369 >gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 777 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 6/259 (2%) Query: 537 QTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q L+F + +R A++ L + A A E K F+ ++S+ELR+PL IIG++++ + Sbjct: 249 QIALSFNQMLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIGYSEMTQ 308 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 Q +E I+ + LL++VNDILD++ ++AG M L + LL++V Sbjct: 309 EDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVV 368 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + M + + +++ +G AD+ ++ QI +LSNA F+ +G + ++ Sbjct: 369 AIMTPLMEKQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQGEITV--EVQN 426 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +G+ I SV + G + + +F F R+ G GLGLSI + F ++ GG + Sbjct: 427 HGEHIVVSVHDTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSI 486 Query: 773 SISSSDEGVTTINCRIPSK 791 + S+ + ++P K Sbjct: 487 RVESTPGKGSHFTVQLPRK 505 >gi|239623827|ref|ZP_04666858.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521858|gb|EEQ61724.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1233 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 134/251 (53%), Gaps = 20/251 (7%) Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 L +VTD + ER AL E R+A + K+ F+ +S+++R+P+ I+G T L K Sbjct: 817 LVRADVTDMLAEERRRKKALEEALAVAREASQAKSDFLSTMSHDIRTPMNAIMGMTVLAK 876 Query: 596 TSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ ++ + ++ IS SS+ LL+L+NDILD+ ++ + LN+ I ++ LL + Sbjct: 877 AH----LDERERVADCLQKISVSSSHLLSLINDILDMNKIEQSKISLNHMKISMSGLLEK 932 Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + + +R + S G + G + D R+ QI +LSNA+ F+ +G +V A Sbjct: 933 LSDIMEPQAKASGLRFTIQSRGIEHGYYYGDSLRINQILINLLSNAVKFTPEGGSVEFLA 992 Query: 713 A-----RDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 R G + F+V++ G + E+ +F F N R + G GLGLSI + + Sbjct: 993 EEITPIRPQGYARYRFTVRDTGIGMGEEFLSHIFEPFTRNTARVE--GTGLGLSITKGLV 1050 Query: 766 NLHGGHVSISS 776 +L GG++ + S Sbjct: 1051 DLMGGYIGVES 1061 >gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB] gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB] Length = 901 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+PL ++G + + S SK + I+ S +LL ++NDIL Sbjct: 532 KSEFLAKMSHEIRTPLHGVLGMAHI--GGRNTSEGSKAHEAFAKITHSGNLLLGIINDIL 589 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + ++AG++K+ + I L +L E + + + + + +++ +++ +D RL Sbjct: 590 DFSKMEAGMLKIESTDIDLPAILAESMELMQERANAKKLSLQLRVAENLPAHCQSDSLRL 649 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI +LSNA+ F+ GS V L A+ D IF V + G I + +FN F + Sbjct: 650 RQILLNLLSNAVKFTVSGS-VTLDASFDGHQLIFKVSDTGIGITHEQSSKIFNPFEQGDN 708 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I + L G + + S+ + + R+P Sbjct: 709 STTRRFGGTGLGLAITSHLVKLMEGTIHLESTPDNGSRFEIRLP 752 >gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 589 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 22/239 (9%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619 +RK ++I+ FV +V++EL++P+T I GF + LK G++N+ +++E I + Sbjct: 359 VRKLEQIRTEFVSNVTHELKTPITPIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 415 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673 L L+NDIL L+ ++ + N L ++++ V Q+IA + NN+R +V+ Sbjct: 416 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLM 475 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 A+ R+ Q+ ++ N + ++ + +V + R++G + SVK+ G IP Sbjct: 476 K-------ANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 528 Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF +G+ RG+ GLGLSIV+ +NL+ G + ++S T +IP Sbjct: 529 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586 >gi|260174381|ref|ZP_05760793.1| two-component system histidine kinase, FrrD [Bacteroides sp. D2] gi|315922648|ref|ZP_07918888.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696523|gb|EFS33358.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 482 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++ +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + VI+ A +D V++ G I KS+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|226354971|ref|YP_002784711.1| histidine kinase [Deinococcus deserti VCD115] gi|226316961|gb|ACO44957.1| putative histidine kinase, classic; putative membrane protein [Deinococcus deserti VCD115] Length = 528 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 14/234 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTI 619 L ++ E + F S+ELR+P+T I G L +TS G +Q++ ++ I + S Sbjct: 290 LEQSFESQRRFTSDASHELRTPVTAISGHASYLLRRTSPTG----QQAESLKIIQSESER 345 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L NL+ +L LA D+G + LN + I L E+ + +A + V G+ Sbjct: 346 LTNLIASLLQLARSDSGALVLNKAPIFSTLFLGEISRELAPLAQAQQTTLDV--SGQDIP 403 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKS 737 F D RL Q+ ++ NA+ ++ TV L++A ++G V+++G IPED + Sbjct: 404 FEGDPDRLKQVIINLVGNALKAGAR--TVTLRSALEDGGTQVHLRVQDDGPGIPEDQLER 461 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF + ++ + G GLGLSI + ++ HGG + + S+ TT + +P Sbjct: 462 LFDRFYRLEDSRSRDQGGAGLGLSIAKGIVDAHGGRIWLESTLGQGTTAHVLLP 515 >gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03] Length = 2254 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL EA RK A + K+ F+ +VS++LR+P+ +IG T+LL Sbjct: 1709 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1768 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND-LLNE 653 K + SL+ +Q+ YV+ I + LL L+NDILD + ++AG MK+ + L D +L Sbjct: 1769 KKT---SLDREQNGYVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEA 1825 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--L 710 V+ T H I+ + + V D RL QIF +LSN+ F+ +GS + Sbjct: 1826 VRALCYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVNAK 1885 Query: 711 KAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 + ++G + K + G IP + +F F S A R G GLGLSI ++ I Sbjct: 1886 SSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 1944 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 1945 EDVLGGKIWL-QSEEGVGT 1962 >gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980] gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70] Length = 2208 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 20/240 (8%) Query: 554 ALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 A + K EAL +A + K+ F+ +VS+ELR+PL +IG ++LL+ S L Q+ Sbjct: 1657 ANSAKAEALHNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLRKDQA 1713 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHEN 665 + + I S+ +LL ++NDILD + ++A MKL ++++ EV +S+ + + + Sbjct: 1714 EMADSIRVSADLLLTVINDILDFSKMEADKMKLFIVAFNADEMIREVVRSVSYSNRDKRS 1773 Query: 666 NIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA---ARDNGDF 719 + +++I D L ++ D RL Q+ ++ N++ F+ GS TV K +D Sbjct: 1774 SRNVEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSLKFTENGSITVGAKTDWETKDTVKL 1833 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISS 776 F VK+ G IP +F F + RR G GLGLSI +S I ++ GG + + S Sbjct: 1834 TFWVKDTGIGIPRQQLLKLFKPFSQADNSTARRYGGSGLGLSICKSLIQSMMGGQIELES 1893 >gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 126/239 (52%), Gaps = 16/239 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+AD +K+ F+ VS+ELR+PLT+I+G+T+LL +Q ++V+ + + L Sbjct: 476 READRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTP--GEQREFVKTVYNEANHLYQ 533 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V D+L + ++AG ++L+ + L +++++ ++ ++ + + I L A Sbjct: 534 IVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTMLIDIPP-YLPPVYA 592 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNGDFIF-SVKNNGSSI-PE 732 DR ++ Q+ +++NA+ +S G + L G F+ ++ + G I PE Sbjct: 593 DRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPE 652 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D+ + ++ RF V N + + G GLGLSI ++ + LHGG + S +T + +P Sbjct: 653 DLPR-IWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLP 710 >gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1214 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KT++ + Q Y E I + Sbjct: 833 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 888 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L++ + L+ EV+ +A E +R + G Sbjct: 889 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 947 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 948 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 1007 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + + R G GLGL+I + GGH+ + S Sbjct: 1008 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1053 >gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591] gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591] Length = 922 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A IK+ F+ ++S+ELR+PL +IGFT + + L + Q Y++ I S+ LLN Sbjct: 285 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 341 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++ND+LD + ++AG + L L++ L+EV +A HE + + + I FV Sbjct: 342 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 401 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737 D RL QI + +L NA+ F+ +G+ I K ++N + +K+ G I E Sbjct: 402 GDPLRLQQIVTNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQ 461 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F + Q G GLGL I + + GG +S S TT C + Sbjct: 462 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTV 514 >gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 669 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 17/267 (6%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 +++P+ + + +L + + T+ E+ L + ++D +K++F+ ++S+E+R+PL Sbjct: 382 ALVPMEDREPLLIGISWDTTNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 441 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 I+GF+ LL T+ +Q Y + I+ +S ILL L+NDILDL+ ++AG L Y Sbjct: 442 IVGFSQLLPTA---DTPEEQKLYSDIINQNSDILLQLINDILDLSKIEAGT--LEYVKRP 496 Query: 647 LNDLLNEVKQSIATKMHENNIRIKV---ISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702 +N L EV ++I +H+ I+ V +G+ D R++QI + ++NA F+ Sbjct: 497 IN--LGEVCRTIYA-VHKERIKGGVDFIFDNGEEDLQMEGDPNRIMQIITNFITNATKFT 553 Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762 G + R+ + VK+ G I ++ +F RFV Q G GLGLSI Sbjct: 554 HAGE-IRFGFEREGENVRVYVKDTGIGIEKEKVGHIFERFVKLNSFVQ--GTGLGLSICR 610 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789 I GG + ++S +T IP Sbjct: 611 MIIEKIGGEIGVTSEFGKGSTFYFIIP 637 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 18/293 (6%) Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKAD 566 ++R + G +L D +L P + +T+ +++ R AE AL + E A+ Sbjct: 537 EDRNPISGRWQLNHDRLL-----PWFDGKTVRVQISLDIGQRKQAEEALRQSKEEAESAN 591 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K+ F+ ++S+E+R+PL I+G LLKT+ N +Q +Y+ S+ L L++D Sbjct: 592 KAKSVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAIRSTNRLTRLLSD 648 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685 ILD++ ++AG M++ + + + + + + + + ++ + L + D Sbjct: 649 ILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLPLRLIGDEV 708 Query: 686 RLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 RL QI ++ NA+ F+ KG + ++ +A+ + + +V + G I E+ K +F Sbjct: 709 RLRQILFNLVGNAIKFTEKGTIRIDACLLPRASDSSVRVLVTVGDTGIGISEEHLKDIFE 768 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 FV RR G GLGLSIV + L G +SI S+ +T +P K Sbjct: 769 PFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLPFK 821 >gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 869 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 131/246 (53%), Gaps = 16/246 (6%) Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +VT+ R + L EKN L KA+ K+ F+ +S+ELR+PL I+GF L+++ Sbjct: 454 DVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMES 513 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 S Q + + I + LL L+N+ILDLA +++G + ++ + L++++ E Sbjct: 514 STPAP-PPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQECVL 572 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + ++I++ V + F+ DR RL Q+ +LSNA+ ++ KG +VIL+ ++ Sbjct: 573 MSEPQAQLHDIKV-VFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQS 631 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771 + D + FSV++ G + + + FNR A+ + G G+GL + + + GG Sbjct: 632 SDDMMRFSVRDTGEGLSAEQLGQLFQPFNRLGQEAN--NQEGTGIGLVVSKRLVESMGGV 689 Query: 772 VSISSS 777 + + S+ Sbjct: 690 IGVQST 695 >gi|163847651|ref|YP_001635695.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525510|ref|YP_002569981.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668940|gb|ABY35306.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449389|gb|ACM53655.1| response regulator receiver sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 396 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 22/322 (6%) Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534 SPG+ R + A C Y ++ A I F ++G E L + V+E ++ Sbjct: 89 SPGSRERALVAGCDGYLSKPIDARALPAQIAEF------IEGRRERLPE-VMETELLRSY 141 Query: 535 NAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N + + + + A R LT N L+ D +K+ F+ +S+ELR+PLT+++G+ +L Sbjct: 142 NQK-------LVERLEARVRELTLANAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLEL 194 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 LG L +Q + V + SS +L +N++L V + LN+ + D+L Sbjct: 195 FDRGMLGPLTPQQEEAVRVMRRSSEVLARQLNNLLYFQEVRS--RSLNFVQLQPLDILRP 252 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + + + + ++ +V+ ++ DR + +L NA ++ G V Sbjct: 253 LIAAARERAAQAQLQFEVLLS-EMQPIEVDRSAFEHLVRNLLDNAFQYTEPGGRVRFIVR 311 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGG 770 + I V++ G IP + +F F H RG G GLGL+IV + HGG Sbjct: 312 DEPTRLIIRVEDTGIGIPAGEQEKIFLPFYQVDHSLARGH-PGSGLGLAIVRHIVEAHGG 370 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 +++ S+ + IP ++ Sbjct: 371 QIALRSAPGEGSAFTIAIPRRQ 392 >gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14] Length = 696 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 11/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E ++A E K F+ ++S+++R+P+ IIGF+DLL K K +Y+ I Sbjct: 296 LKKSAEQAKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLKNEEKAREYLGKIK 353 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S L+ +++ +L+ A +++G L L+++ V + + I+ + ++ Sbjct: 354 SSGNFLMTIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTVFESDIQSKEIQYSIDTN 413 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGD--FIFSVKNNGSS 729 + V D+ +L +I+ I+SNA+ ++ G + I + A D+ ++F ++ G Sbjct: 414 IQHKYAVCDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETASDDKKAWYVFICEDTGIG 473 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + ++ +F+ F S H G GLGLSIV+SF+ L GG + + S T Sbjct: 474 MKQEYLPHIFDEF-SREHTATENKVVGTGLGLSIVKSFVELMGGKIYVESEQGKGTKFTV 532 Query: 787 RIP 789 IP Sbjct: 533 EIP 535 >gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] Length = 858 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 E+AL EA ++A+ + K+ FV ++S+ELR+PL IIG++++L N++ + Sbjct: 318 EQALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESEDDGNTQYAP 377 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I S LL LVNDILD++ ++AG M+L + + + V + + +N Sbjct: 378 DLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARPVIDKNQNS 437 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727 + D LG D + QI ++SNA F+ G T+ L R++ D F +V + G Sbjct: 438 LVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQVG-TLTLSVRREDTDHFTIAVADTG 496 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E+ +F F R+ G GLGLSI F + GG ++ +S+ + Sbjct: 497 IGMNEEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATSTPGSGSVFT 556 Query: 786 CRIP 789 +P Sbjct: 557 VSLP 560 >gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] Length = 1176 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E +IP+ +L F+ +V++ ++ E L + E + K+ F+ +S+E+RS Sbjct: 462 VEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRS 521 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G +L+ SKL N Q Y + T LL+ +NDILD + ++AG M L Sbjct: 522 PLNAVLGGVELMLDSKL---NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKN 578 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 + ++ +V Q +A K +E + + + + + V D QRL Q+ ++ NA+ F Sbjct: 579 MSFSPAKMVAQVMQILAPKANEKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKF 638 Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 SS G I +V + G I K +F F V + H G G Sbjct: 639 SSGGCISVEMWIPDGHHQEVQLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTG 698 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I + GG + +SS Sbjct: 699 LGLAICSELITMMGGEIELSS 719 >gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51] Length = 1020 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 557 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 617 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 618 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713 >gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1002 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 11/249 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F ++T ER L E A A++ K++F+ +S+E+R+PL I+G +L+ L Sbjct: 489 FSDITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLAD 548 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q VE +S++LLNL++DILDL+ ++AG M + L + + + Sbjct: 549 TQRERLQTVE---GASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPL 605 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718 ++ VI D L S +V D R+ QI + ++ NA+ F+ +G + RD+ D Sbjct: 606 ATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPA 665 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + V + G + + ++F F RR G GLGL++ + + G + + Sbjct: 666 SPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDV 725 Query: 775 -SSSDEGVT 782 S+ EG T Sbjct: 726 KSAPGEGST 734 >gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM 22836] Length = 916 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 25/255 (9%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ + E+ LT + D++K++F+ ++S+E+R+PL I+GF+ ++ + Sbjct: 536 DITELKQIEKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAET---DDQ 592 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K++ Y ++ ++S LL LVN+ILD + +++GI++ L E+ ++ A++ H Sbjct: 593 EKRNYYFNFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCH 652 Query: 664 E------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 NNI G +DR R+ Q+ S ++ NA F+ KG DN Sbjct: 653 PETELIYNNI-------GAELWIRSDRNRIHQVLSNLIINAQKFTKKGYIKYGFEVIDNN 705 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ V ++G I ED +F RF+ SNA G GLGL+I S + GG +S+ Sbjct: 706 VKVY-VNDSGIGIVEDQLDKIFERFMQVDSNA-----IGTGLGLAICRSIVERLGGEISV 759 Query: 775 SSSDEGVTTINCRIP 789 +S + + +P Sbjct: 760 TSELQKGSCFTFTLP 774 >gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1784 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ V++T+ L E A + K F+ ++S+E+R+P+ IIG + L + Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712 + K I + + + + D RL Q+ +++NA+ F+ +G + +++ Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV+++G + E +F F R+ G GLGL+I + + L GG Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248 Query: 771 HVSISS 776 + + S Sbjct: 1249 KIGVES 1254 >gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 571 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K SFV +VS+EL++PLT+I + +LL ++ + K++ Y++ I + S L LVN++L Sbjct: 348 KTSFVSNVSHELKTPLTSIRMYAELLFEGRIKDPDKKKT-YLQVIVSESQRLTRLVNNVL 406 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D + ++ G + I LN+ L EV S ++ E + I G+ ADR + Sbjct: 407 DFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFLGEKIFVNADRDAIE 466 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 Q+F ++ N++ ++ G V++ ++ D +++ G +PE +F +F V + Sbjct: 467 QVFINLIDNSIKYAGPGIEVVVSVNKNGKDCEIRIEDRGPGVPEADRHKIFEKFHRVDDT 526 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +++G GLGLSI GG++ S D G + R+P Sbjct: 527 LTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569 >gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1055 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 19/256 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF ++TD AE L E A A++ K+ F+ ++S+ELR+PL I+G+ +L+ Sbjct: 551 TFQDITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHELRTPLNGILGYAQILQRD--S 608 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL KQ + I + LL L+NDILDL+ ++A M+L S+ L V + Sbjct: 609 SLTPKQLAEINIIYKCGSHLLTLINDILDLSKIEARKMELYPSSFYFLGFLQVVSEICRI 668 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---- 715 K + I D L V AD +RL Q+ +L NA+ F+ G+ A D Sbjct: 669 KAEQKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNAVKFTDAGAVTFKVAVVDLISV 728 Query: 716 --------NGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 N + I F +++ G + + + +F F V + R G GLGL+I Sbjct: 729 ESTTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQVGDTRR-MVEGTGLGLAISLKI 787 Query: 765 INLHGGHVSISSSDEG 780 I + G + ++S + Sbjct: 788 IEMMGSSIKVASKSQA 803 >gi|332528410|ref|ZP_08404402.1| sensor histidine kinase/response regulator [Hylemonella gracilis ATCC 19624] gi|332042089|gb|EGI78423.1| sensor histidine kinase/response regulator [Hylemonella gracilis ATCC 19624] Length = 1127 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 8/260 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 QT L + R + AL EA A + K +V +++ELR+PL +I+G+ +L Sbjct: 641 QTQLLQKEIDAHQRTDEALQSAKEAAESASQAKTRYVAGMTHELRTPLNSILGYAQILLR 700 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +L + V I S + L++ +LDLA ++AG ++L+ + + + L+E+ + Sbjct: 701 GN--ALKGGAREAVTTIQQSGQHMHALIDGLLDLARIEAGRLRLDPAPLPFQEFLSELAR 758 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + + ++ + G++ ++V AD +RL QI +L+NA+ F+ +G V R Sbjct: 759 MVQPQAEGKGLAFRLETLGRVPAWVRADAKRLRQILINLLANAVRFTDRGRIVFRVDCRH 818 Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F +++ G I P+D + +F F S R G GLGL+I L GG + Sbjct: 819 E-VLRFDIEDTGIGIAPQDQ-ERIFMPFERGSAGRRSSEAGTGLGLAITHLLTELMGGEL 876 Query: 773 SISSSDEGVTTINCRIPSKE 792 + S +T + R+ +E Sbjct: 877 ILQSEVGHGSTFSVRLYLRE 896 >gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] Length = 616 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L K + K+ + +S+ELR+PL IIG + +L G L +Q +Y++ I+ S+ Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTQQQREYLKTINISAV 161 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L ++ +DI+DL +D+ ++L + + L++++ + I+ + L Sbjct: 162 SLGHIFSDIIDLEKIDSRRIELFNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLP 221 Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736 +F+ D RL Q+ ++SNA+ F+ G + L R D+ F FS+++ G IP++ + Sbjct: 222 NFILVDNARLSQVLWNLVSNAVKFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQR 281 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 VF F N+ + +G G+GL+I + L GG +++ S + +T I + Sbjct: 282 KVFAMFYQAENSQEKKAQGSGIGLAISKRIAKLMGGDLTLESEEGKGSTFTLTIQA 337 >gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus pseudintermedius HKU10-03] gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus pseudintermedius HKU10-03] gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus pseudintermedius ED99] Length = 585 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 10/232 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA---SSTILLN 622 +++K F+ VS+ELR+P++ + G+T+ S + + ++ + E+++ S L Sbjct: 351 EQVKKDFIASVSHELRTPISLLQGYTE----SIVDGVVTEPEEINEFLTVVLDESKRLSR 406 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681 LVN++L++A +DA + + + DL+ ++ + E N+ + DG++ S Sbjct: 407 LVNELLNVAKMDAEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWY 466 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ NA ++ G T+ +KA D+ I ++++ G I + +F R Sbjct: 467 YDFDRMEQVLTNLVDNASRYTQPGDTISIKATADHDHQILTIEDTGVGIAPQHLEKLFER 526 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F V +A + +G GLGL I +N HGGH+ + S + T +P K Sbjct: 527 FYKVDSARKRGSQGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPKK 578 >gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1134 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A+ +K+ F+ +S+ELR+PL I+G++ L+++ N + Sbjct: 736 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 792 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A + Sbjct: 793 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALT-RK 849 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 850 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQ 908 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I + VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 909 DTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 966 >gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 300 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T + E L + E +AD +K++F+ ++S+E+R+PL IIGF+ LL + Sbjct: 56 DITQLKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 112 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ QY+ I+ ++ +LL L+ND+LDL+ ++AG ++L+ +L+ E + + Sbjct: 113 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 167 Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E N+ +K+ + G D R+ QI + +SNA+ + +G + +G Sbjct: 168 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGYIEVYYETDTDGIR 227 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 I SV + G IP D +F RF Q G GLGLSI +S + G +++ S+ Sbjct: 228 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 284 Query: 780 GVTTINCRIPSK 791 +T +P + Sbjct: 285 VGSTFTVELPCR 296 >gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1055 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 11/216 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ I+ L+ S L +Q+ A+S L L++DIL Sbjct: 671 KSEFLANMSHEIRTPINGIVTILQLMVAS---GLTEEQADQARMALAASRRLTRLLSDIL 727 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D++ V+AG M + + L + EV++ + + V I D + D R Sbjct: 728 DISRVEAGKMAIVQAPFHLRRAMMEVRELLLPAGDPPGVTCTVSIDDAVPEIVIGDVTRF 787 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRF 742 QI + +L NA+ F++ G+ + A+ + +FSV ++G IP+D S+F F Sbjct: 788 QQILTNLLGNALKFTASGTVSVTAVAQPDASAGHPQVLFSVADSGVGIPKDKLDSLFAPF 847 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V +R +G GLGL+I + + L GG + I S Sbjct: 848 TQVDQGYRRDYQGAGLGLAICKRLVGLMGGSIGIES 883 >gi|328472027|gb|EGF42904.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus 10329] Length = 783 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102] gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102] Length = 1373 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 129/235 (54%), Gaps = 16/235 (6%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + +K+ F+ ++S+E+R+P+T +IG +LL+ K L+S+Q +YVE I S+ LL ++N Sbjct: 790 NRLKSQFLANMSHEIRTPITGVIGMAELLQDMK---LDSEQREYVENIQRSANALLTVIN 846 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSF 680 DILD + V++G + + L+ +L +V + ++ ++ + I++ + Sbjct: 847 DILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMV--V 904 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCK 736 + D R+ QI + +L+N++ F+++G +K ++ D + F++++ G I E++ K Sbjct: 905 IGDPGRVRQIVTNLLTNSIKFTNQGHVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEVRK 964 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F RR G GLGL+I ++ + L G +++ S TT IP Sbjct: 965 KLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIP 1019 >gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 650 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+E+R+P+ IIG T LL + + +Q + + ++ LL +V+DIL Sbjct: 275 KSAFLANMSHEIRTPMNAIIGLTHLLARD---ATDDQQRSRLAKVDGAARHLLQVVSDIL 331 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ ++AG + L L+++L + TK E + + V + + D RL Sbjct: 332 DLSKIEAGKLSLEREEFRLDEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRLA 391 Query: 689 QIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS 744 Q+ +L+NA+ F+ +G + + RD + F V+++G I D +F F Sbjct: 392 QVLINLLANAVRFTDRGGVRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFDQ 451 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 + RR G GLGL++ F L GG + S EG T Sbjct: 452 GDNSATRRHGGTGLGLALTRRFATLMGGEAGVDSRLGEGST 492 >gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 628 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 15/243 (6%) Query: 544 NVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++++ + +R L + +N+AL A++ K+ F+ ++S+E+R+P+ I+G LLK + SL Sbjct: 237 DISEQKKYQRELEDSRNKAL-AAEKAKSLFLANMSHEIRTPMNGILGMASLLKDT---SL 292 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 N Q + + I++ LL ++NDIL + +++G + + + L + +V IA Sbjct: 293 NPLQEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANIA 352 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDF 719 E I I D + F+ +D RL QI + +LSNA+ FS V L K NG+ Sbjct: 353 SEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGNI 412 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 + FSVK+NG + E+ +F F + A G R G GLGLSI L GG + Sbjct: 413 VKVLFSVKDNGIGMSEEEQSRLFQEF-TQADEGVTRKFGGTGLGLSISSKLAKLLGGKIK 471 Query: 774 ISS 776 + S Sbjct: 472 VES 474 >gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 942 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 10/237 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ S N + Sbjct: 540 SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRG 596 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L+ + + I Sbjct: 597 LVI--IERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGI 654 Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++ + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V++ Sbjct: 655 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQD 713 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 G I + VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 714 TGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 770 >gi|227891158|ref|ZP_04008963.1| two component system histidine kinase [Lactobacillus salivarius ATCC 11741] gi|227867032|gb|EEJ74453.1| two component system histidine kinase [Lactobacillus salivarius ATCC 11741] Length = 492 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E NE +++ +E + F ++E+R+PLT I G + L + + ++S +E Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVN+ LD + +G ++L+ + + +LN + + + K + + ++ Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 366 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + KL + AD RL+QI I NA+ F+ G + + A + N + I + +NG + E Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424 Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++++ R+ + + + G GLGLSIV + LH G V++ S + TT R P Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484 Query: 790 SK 791 +K Sbjct: 485 NK 486 >gi|225351866|ref|ZP_03742889.1| hypothetical protein BIFPSEUDO_03468 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157113|gb|EEG70452.1| hypothetical protein BIFPSEUDO_03468 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 344 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 15/235 (6%) Query: 554 ALT--EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ALT E E L+ AD+++ V +VS+ELR+P++ +++ G ++ S +E Sbjct: 101 ALTFNEMAEELQHADQMRRDMVANVSHELRTPVS---ALQAMVENMADGVIDPTPSN-LE 156 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRI 669 I + L +L+ +LDL+ ++AG L D L+E + IA H ++I + Sbjct: 157 SILNQTHRLSDLIAFLLDLSRMEAGAASLQIEMFNFADFLDETVEPLEIADAGHAHDIEM 216 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727 V D ++ D+ RL Q+F+ I++NA+ S+ +TV+++A +D G + +V N G Sbjct: 217 HVPDDIEMA---GDQDRLRQLFTNIIANALKHSADNTTVLIEAHENKDFGTIVTNVVNFG 273 Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 S IP++ +F RFV + G GLGLSI LHGG V + G Sbjct: 274 SQIPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGSVRVVDDPRG 328 >gi|167755722|ref|ZP_02427849.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402] gi|167704661|gb|EDS19240.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402] Length = 639 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608 + E A+ KNE LR + ++ +S++LR+PLT+I G +L + GSL+ +K+ Q Sbjct: 398 KEEAAIEAKNERLRA------NLLRSISHDLRTPLTSISGNASVLINNS-GSLDENKKMQ 450 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 E I S L+NLV ++L + ++ G M L+ T ++ +++NE I+ K E+ I Sbjct: 451 LYEVIYDDSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIE 510 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +K + L D ++Q+ I+ NA+ ++ KGS + ++ + + DF+ + ++G Sbjct: 511 VKANDEFILAKI--DAGLIIQVIINIVDNAIKYTPKGSMISIETFK-HKDFVEIQIADDG 567 Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + I + + +F F + H RRG+GLGL++ ++ I HGG++++ + T + Sbjct: 568 AGISDKDKEKLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFS 627 Query: 786 CRIPSKE 792 +P KE Sbjct: 628 FTLPIKE 634 >gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1792 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ V++T+ L E A + K F+ ++S+E+R+P+ IIG + L + Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712 + K I + + + + D RL Q+ +++NA+ F+ +G + +++ Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV+++G + E +F F R+ G GLGL+I + + L GG Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248 Query: 771 HVSISS 776 + + S Sbjct: 1249 KIGVES 1254 >gi|75675205|ref|YP_317626.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420075|gb|ABA04274.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 1005 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 7/249 (2%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 F +++ S + E L++ +A K + +S+E+R+PL +IIGF +++ K G Sbjct: 746 AFRDLSQSKKTETELSQARRQAERAANAKADVLARISHEIRTPLNSIIGFAEVMIDEKFG 805 Query: 601 SLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 SL +++ YVEY I AS +++ ++D+LDL+ ++ G + L + LND++ + Sbjct: 806 SLGNER--YVEYMKDIRASGERIISFIDDLLDLSRIETGKLDLAFVNQNLNDIVEQCVAV 863 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDN 716 + + + I I+ L + VAD Q L QI ++ N++ ++ G VI+ A D Sbjct: 864 MQPQANRERIIIRTSLAHTLPAIVADAQALRQITLNLIGNSIHLANAGGQVIVSTAVNDF 923 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775 GD V+++G S+ ED + F + Q + G+ LS+ ++ + + I Sbjct: 924 GDVALRVRDSGHSLSEDELAAATEPFRTPPPSDQASKSAGVSLSLTKALVEANRAQFHIK 983 Query: 776 SSDEGVTTI 784 + T I Sbjct: 984 TGPHSGTLI 992 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 14/238 (5%) Query: 550 RAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 R E AL T E A+E K+ F+ VS+E+R+P+ I+G ++LL S L+SKQ Sbjct: 327 REEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMES---GLSSKQR 383 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y + I ++ L+ ++NDILD + +++G + L L+ E+ + ++ Sbjct: 384 DYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDV 443 Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720 + + D S V D RL Q+ +LSNA+ F+ G + +AR + Sbjct: 444 QFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLF 503 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F++ + G I + + +F F RR G GLGL+I ++ + L GG ++ S Sbjct: 504 FAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQS 561 >gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 619 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 9/227 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ I+G +LLK +K N Q YV+ + SS LL+++NDIL Sbjct: 213 KSEFLANMSHEIRTPMNGIVGVAELLKETKP---NEVQRNYVDILLTSSHTLLDIINDIL 269 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG +L+ + L L+ + + + + + D + + AD RL Sbjct: 270 DFSKIEAGHFELDPTKFDLKSLIQQQANEYSIRAKQQELFFDCNIDPAVPQEIEADSVRL 329 Query: 688 LQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 Q+ + ++ NA+ F+ +G + L F VK+ G I +D S+F++F Sbjct: 330 KQVINNLIGNALKFTHRGYVELNIKLLENETGNQLQFEVKDTGIGIAKDKLDSIFDKFQQ 389 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + Q G GLGL+I + + L GG + ++S + ++ IP Sbjct: 390 ADGSTARQYGGTGLGLAISQKIVELMGGKLQVTSEVDLGSSFYFSIP 436 >gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 881 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 3/237 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++E L D +K+ F +VS+ELR+PLT I+ + LK S + SL + ++ +E I Sbjct: 193 LAAQHEELSALDRLKSQFFANVSHELRTPLTLILAPVEKLK-SDVASLGAPAAELLEVIE 251 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL LVNDIL L ++ G L I + L+ S+ I + + Sbjct: 252 NNALRLLRLVNDILGLIRLEEGRASLVKKQIDMAHFLSHTTASMKHLAAMKGIELTLSEP 311 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 AD L +I +++NA+ F+ + + AA + + + G IP + Sbjct: 312 QGDLRIDADPDALEKIIGNVIANAIKFTPPEGRIDVAAAHEGDMVTVRIADTGIGIPPEQ 371 Query: 735 CKSVFNRFVSNAHRGQRRGVG--LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF RR G LGL++V I HGG V++SS TT R P Sbjct: 372 LPHIFDRFYQVDGSATRRHQGLGLGLALVRELITRHGGDVAVSSDSGRGTTFVLRFP 428 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + SV++NG+ I + +F+ F S G+ G+GLGL++ I HGG +S+ SS Sbjct: 796 ELFVSVRDNGTGIDPKIQSQIFDPFFSTKDVGE--GMGLGLAVSHRIIANHGGSLSVKSS 853 >gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] Length = 957 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LLK LNS+QS+YV+ I+ S + LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLKDE---GLNSQQSRYVDVINRSGSTLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG +++ L ++ +V+Q ++ + E + + + + + +F Sbjct: 522 LNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQLLSGRAAEKQLELSALIESDVTTFWKG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D R+ Q+ + ++ NA+ F+ G I A G +F V ++G I K++F+ Sbjct: 582 DVTRISQVLNNLVGNAIKFTDSGHVDIYVANDPERAGHVLFEVSDSGIGISPKEQKNLFD 641 Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F ++ + G GLGL+I + + GG + + S Sbjct: 642 AFTQASGGLSSKGGTGLGLAISKKIVEAMGGELQVDS 678 >gi|196045140|ref|ZP_03112373.1| sensory box histidine kinase [Bacillus cereus 03BB108] gi|229184110|ref|ZP_04311321.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1] gi|196024142|gb|EDX62816.1| sensory box histidine kinase [Bacillus cereus 03BB108] gi|228599399|gb|EEK57008.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1] Length = 288 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL S+ + + QY Sbjct: 45 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 103 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 163 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 164 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 222 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP + VF +F +RG++ G G+GL+I S LH G +++ S++ E V Sbjct: 223 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 278 Query: 783 TI 784 TI Sbjct: 279 TI 280 >gi|114571557|ref|YP_758237.1| histidine kinase [Maricaulis maris MCS10] gi|114342019|gb|ABI67299.1| histidine kinase [Maricaulis maris MCS10] Length = 657 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 17/243 (6%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++V V + RA E EA ++A K+ F V++ELR+PL +G + LL+ + +L Sbjct: 149 ISVGRDVTSRRAAHEDLEASQRA---KSLFFAAVTHELRTPLAGALGVSRLLEGT---AL 202 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q+ YV I+AS+ L +V+DILDL+ ++AG ++L T+ + +L+ E + A + Sbjct: 203 KPDQADYVRSIAASADHALAMVDDILDLSRLEAGRLELRPETVDIAELVRETVELAAPRA 262 Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715 E + I V+ + G D RL QI ++ NA+ F++ G I RD Sbjct: 263 QEKALEIGVVHAFGAPTRVTGDAARLKQILYNLIGNAVKFTAAGGVRIDITNAPDSEGRD 322 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773 SV + G I E +S+F F A G G GLGL++V + + Sbjct: 323 R--LALSVSDTGPGISEADQESLFEHFERGAAERDGAESGAGLGLAMVRRLADAMNSAMG 380 Query: 774 ISS 776 + S Sbjct: 381 VES 383 >gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB] Length = 620 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 12/244 (4%) Query: 548 SVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 S+R +A L + E A+ K+ F+ ++S+ELR+P+T IIG + L+ ++ L+ +Q Sbjct: 224 SLRESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTE---LDEQQ 280 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + + I S+ LL ++NDILDL+ ++A ++L ++ ++ EV I+ N Sbjct: 281 RDFADTIQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKN 340 Query: 667 IR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721 I I I+D V D RL Q+ +L NA+ F+ +GS + A + D F Sbjct: 341 ISLISQIADDLPEILVGDAIRLRQVLLNLLGNAIKFTEQGSVTLEVAHQPTDDGRQRLNF 400 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSD 778 V++ G + + ++F F RR G GLGLSI I L G +S S D Sbjct: 401 VVRDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESEPD 460 Query: 779 EGVT 782 G T Sbjct: 461 VGST 464 >gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium profundum SS9] Length = 971 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D+ R +AL EK EA AD K++F+ ++S+E+R+P+ ++G + LL + L +Q Sbjct: 388 DTQRLNQAL-EKAEA---ADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQ 440 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 ++ + S +++++NDILD + ++ G KLN + + DL+ ++ + + E Sbjct: 441 RHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKG 500 Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG---DFI 720 + + S F AD+ R+ QI +++NA+ F+ KG + + DN I Sbjct: 501 LDFSIQCHFDSNSWFFADKSRIRQILFNVINNAIKFTDKGEVRVSLNQGQCDNPKERKLI 560 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + ++ G I ED + +F+ F RR G GLGLSIV NL G + + S+ Sbjct: 561 ITAQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQLANLMNGDIQLESA 619 >gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B] gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B] Length = 753 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T +V E L E A+ K++F+ ++S+E+R+P+ ++G +LL + SL Sbjct: 196 LDITATVHYEEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDT---SL 252 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q Y I S LL ++ND+LD + ++A + L+ L ++EV + Sbjct: 253 TEEQRLYANTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHEVVMLLQANA 312 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 + + + V D + SF+ D R+ QI + ++ NA+ F+++G + DN Sbjct: 313 RDKGLTLLVDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQGHVTARVTGVPHPEDNT 372 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + S++++G IPE+ + +F F V + Q G GLGL+I E I + G + + Sbjct: 373 VMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKMMDGEIWV 432 Query: 775 SSSDEGVTTINCRIP 789 S + R+P Sbjct: 433 ESEFGKGSCFGFRLP 447 >gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040] gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040] Length = 761 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T +V E L E A+ K++F+ ++S+E+R+P+ ++G +LL + +L Sbjct: 190 LDITATVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---TL 246 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 +Q Y I S LL ++ND+LD + ++A + L+ L ++EV + Sbjct: 247 TEEQRLYANTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVMLLQANA 306 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 + + + V D + + F+ D R+ QI + ++ NA+ F+++G + DN Sbjct: 307 RDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEGHVTARVTGVPHPEDNT 366 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + S++++G IP+D + +F F V + Q G GLGL+I E I L G + + Sbjct: 367 VMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDGEIWV 426 Query: 775 SSSDEGVTTINCRIP 789 S + R+P Sbjct: 427 ESQLGKGSCFGFRLP 441 >gi|23012953|ref|ZP_00052923.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 666 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E L E ++ +A K+ F+ + +E+R+PL ++G LL + L+ +Q + Sbjct: 132 GEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLET---DLDPRQKSFT 188 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E + +S +LL LVNDILD + +DA M L + D + EV+ + +++ E ++ + Sbjct: 189 ETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLTSRVAEKDLTLT 248 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNN 726 G DR RL QI ++ NA+ F+ G I A + G + F +K+ Sbjct: 249 TRFGTGVRRVVAGDRLRLRQILFNLVGNAIKFTDHGGIEISVEPLAVERGQVLRFLIKDT 308 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I ++ +F F RR G GLGL+I + +L GG + S TT Sbjct: 309 GIGIGPEIGARLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGEIGYDSLPGQGTTF 368 Query: 785 NCRIP 789 +P Sbjct: 369 RVDLP 373 >gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 946 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 10/237 (4%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A +K+ F+ +S+ELR+PL I+G++ L+++ S N + Sbjct: 544 SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRG 600 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + I S+ +++D+LD++ + +G ++L + L+ + + I Sbjct: 601 LVI--IERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGI 658 Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++ + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V++ Sbjct: 659 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQD 717 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 G I + VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 718 TGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 774 >gi|270290039|ref|ZP_06196265.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4] gi|304385703|ref|ZP_07368047.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284] gi|270281576|gb|EFA27408.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4] gi|304328207|gb|EFL95429.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284] Length = 382 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 14/251 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V S+ ERAL + K+ + +VS++LR+PLT+IIG+ L++ + S + Sbjct: 133 SVISSMEEERALKQS----------KDDLITNVSHDLRTPLTSIIGYLRLIEDHQYQSTD 182 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Y S + +LV D+ + V KLNY+ I ++ +L ++ S + Sbjct: 183 DIL-KYTHTAYLKSVQMKSLVEDLFEYTKVSQSNPKLNYNKIHVDSMLQQLAASFELEAK 241 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + I + + D +++ ++F+ +++NA+ + + G + L A + N IF V Sbjct: 242 QKGFVITSTCVPEDLEMMGDAEKIGRVFNNLITNALKYGAGGKHIYLNAHQINDTVIFEV 301 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 N+G +P +F+RF V + G GLGL+I +S + +H G + S+D+ Sbjct: 302 ANDGQKVPAQALGKLFDRFYRVEESRSKATGGTGLGLAIAQSIVEMHNGTIEAHSNDKRT 361 Query: 782 TTINCRIPSKE 792 + I ++P K+ Sbjct: 362 SFI-IQLPLKQ 371 >gi|269794138|ref|YP_003313593.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269096323|gb|ACZ20759.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 569 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 21/262 (8%) Query: 542 FVNVTDSVRAER-ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--- 595 V + DS +R AL ++ L +A E K+ FV VS+ELR+PLT+I+G+ +L+ Sbjct: 309 IVRIVDSGGVDRGALVASHDVTELMEAIETKDRFVGTVSHELRTPLTSIMGYLELIAEDD 368 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ L+ + +YV ++ LL+LV+D+L A +D+G ++L L+ L+ + Sbjct: 369 STGDNPLSEETREYVGIARRNAEQLLSLVSDLLTTAQIDSGALRLTTDVTTLSSLVADAV 428 Query: 656 QSIATKMHENNIRI------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709 ++ + E I + V+ D DR+R+ Q+ +LSNA+ ++ G TV Sbjct: 429 EAARPRFVEAGITLTSTVVPTVVQD-------VDRRRMAQVIENLLSNALKYTPAGGTVT 481 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 + + G + +V + G + +F +F +A + +G GLGL I + + Sbjct: 482 VTTSTVLGSSVMTVSDTGIGMSRADLGKMFTKFFRAESARTARIQGFGLGLVICRAIVEA 541 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 HGG + I S+ T ++ +P Sbjct: 542 HGGKLRIDSTLGRGTKVSAVLP 563 >gi|209774098|gb|ACI85361.1| sensor protein torS [Escherichia coli] gi|320642985|gb|EFX12186.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str. 493-89] gi|320648443|gb|EFX17098.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str. H 2687] Length = 904 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] Length = 1088 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 18/281 (6%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573 L+ E SD E ++I L A ++ + + A+ E E+ ++A E K+ F+ Sbjct: 352 LKRVAEDTSDEDDETAVINLQTADGTAQAYDLLEKIIAQT--REDKESAQEASEAKSMFL 409 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 ++S+E+R+PL I+GFT+LLK + LG +Q ++VE I SS LL ++N+ILDL+ + Sbjct: 410 ANMSHEIRTPLNGIVGFTELLKDTGLG---EEQHEFVEIIEKSSENLLEIINNILDLSKI 466 Query: 634 DAGIMKLNYSTIVLN--DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690 ++ KL IV N D + A + E +I + D L D ++ +I Sbjct: 467 ESN--KLEIEDIVFNPIDEFESAVEVYAVRASEKHIDLGCFIDPTLEHPLKGDPTKIKEI 524 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS 744 +LSNA+ F+S ++ + R D F V+++G + + +F F Sbjct: 525 IINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRVRFEVQDSGIGVTSEQKSRIFEAFSQ 584 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 R+ G GLGL+I F+ L GG + + S TT Sbjct: 585 ADTSITRKYGGTGLGLTISSRFVELMGGELDLHSETGSGTT 625 >gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 738 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A A+ K+SF+ +S+E+R+P+ I+G LL S GS ++ +YV I S L Sbjct: 343 AAEAANLAKSSFLATMSHEIRTPMNGILGMAQLLLMS--GSAEDERHEYVRTILNSGQTL 400 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGS 679 L+L+NDILD++ V+AG ++L + ++ EV + + I G + Sbjct: 401 LSLLNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFFAQAEAKGLSITAQWHGPAVQR 460 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG--DFIFSVKNNGSSI-PED- 733 + AD+ RL QI + +LSNA+ F+ +G+ I + R++G F+V ++G I PE Sbjct: 461 YRADQIRLRQILTNLLSNAVKFTKEGAIRIEAREIEREDGWARLEFAVIDSGIGIAPEKR 520 Query: 734 -MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + F++ S+A R Q G GLGLSIV S L GG + S Sbjct: 521 ALLFKPFSQLDSSATR-QYGGTGLGLSIVRSLAELMGGEAGVES 563 >gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 1129 Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++NE L+ A+++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 444 KTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670 I S L LV+D+LD + G + + S + L+ + V + + IRI + Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V SD LG +D QRL Q+ ++ NA+ ++S+G VI + D+ + V + G I Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620 Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + +F + R+G GLGLSI I L GG + +SS TT + + Sbjct: 621 PAEYLEHIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680 Query: 789 P 789 P Sbjct: 681 P 681 >gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500] Length = 1016 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 17/235 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A +A K EA KA++ K+ F+ ++S+E+R+PL +IIG +LLK L + Q + + Sbjct: 173 ANQAFLAKEEA-EKANKAKSDFISNMSHEMRTPLNHIIGSLELLKEFP---LTTDQKELL 228 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 SS LL +VN+ILDL+ V+ G LN S L L + +IA H+ + + Sbjct: 229 NISQQSSESLLFMVNNILDLSKVEQGKTVLNLSIFNLVSFLEDSIGAIAPNAHQKGLMVG 288 Query: 671 VISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKN 725 + S S + D L QI +LSNA+ F+SKG I + +N + ++ Sbjct: 289 LYSTPCSSSIPVIGDVNLLRQILVNLLSNAIKFTSKGEVFIKVSVSPNLNNTSYSTQIEV 348 Query: 726 NGSSI---PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774 S I P+D K +F RF S G R G GLGLSI + + L GGH+ I Sbjct: 349 TDSGIGIKPKDFDK-LFQRF-SQLDTGVNRAYDGSGLGLSICKQLVELMGGHIGI 401 >gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 1792 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 18/244 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A RAL EK L + K+ F+ ++S+ELR+PL +I+ L + +L+ +Q + Sbjct: 1107 QARRALEEKAGELALTSKYKSEFLANMSHELRTPLNSILILGQQLSDNVEHNLSDRQVEC 1166 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I A+ + LLNL++DILDL+ +++G + ++ I LL + + + + Sbjct: 1167 ARTIHAAGSDLLNLISDILDLSKIESGTVSIDAEEISFAHLLQMIARPFRHEAESRGLSF 1226 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------------LKAARD 715 V ++G G V D +RL QI +LSNA F++ G + L AR Sbjct: 1227 DVEATEGLSGHIVTDVKRLQQILKNLLSNAFKFTAAGGVSLKVAPAASGWSADNLSLARA 1286 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772 G F V + G I + K +F F A G R G GLGL+I L GG + Sbjct: 1287 KGVVAFKVADTGIGISAEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRDLAQLLGGEI 1345 Query: 773 SISS 776 + S Sbjct: 1346 QLRS 1349 >gi|16124282|ref|NP_418846.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221232965|ref|YP_002515401.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13421116|gb|AAK22014.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220962137|gb|ACL93493.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 900 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++ + +AE AL E A + A+E K F+ ++S+E+R+P+ ++G +LK +L Sbjct: 501 ILDIDEKKKAELALIEAERAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHVLK-RELPP 559 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +S + + A+ +L L++D++D++ ++AG + LN+ + DL+ V + +AT+ Sbjct: 560 GDS--ASLLNEALAAGQMLSTLLDDVIDISRIEAGRLDLNHEPVDPRDLVRGVARLLATQ 617 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDF 719 +R+++ LG D R+ Q ++ NA+ F+ KGS + R D G + Sbjct: 618 AAHKGLRLELDLPDDLGWIETDPTRVRQALFNLIGNAVKFTLKGSVTVRAQRRITDAGPY 677 Query: 720 -IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F + + G +P + K +F RF RR G GLGL+I + GG VS S Sbjct: 678 LVFDIIDTGVGVPLEAQKRLFERFQQADAGTTRRFGGSGLGLAITRKLARMLGGEVSFRS 737 Query: 777 -SDEGVT 782 EG T Sbjct: 738 VPGEGST 744 >gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 862 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 550 RAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R+ER L KNEA A+ K F+ ++S+E+R+P+ I+GFT++L+ + + ++ + Sbjct: 357 RSERELRRAKNEA-ESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEE---RDPRRRK 412 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+E I++S T LL ++ND+LDL+ V+A + L + L+ E++ A + ++ Sbjct: 413 YIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKHLI 472 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG--DFIF 721 + V I+ + + DR RL QI ++ NA+ F++ G I+ K + ++ D Sbjct: 473 LDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDLRI 532 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 V ++G I + +F F R+ G GLGL+I L GG +S++SS Sbjct: 533 DVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSSPG 592 Query: 780 GVTTINCRIPS 790 + +P+ Sbjct: 593 EGAIFSIELPN 603 >gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] Length = 607 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 16/238 (6%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 ++K+ F+ + S+ELR+PL ++GF L+ + ++ Q+++ S+ LLNL+ND Sbjct: 349 QLKSQFLANTSHELRTPLNGMLGFLKLV-MDGMADDPEEEHQFIQEAYRSALHLLNLIND 407 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADR 684 +LD+A ++AG M+L + I +N+LL EV+ ++ + + K+ + + Sbjct: 408 VLDIAKIEAGKMELELTPIKINELLQEVENFTQAQLQQKQLNFKIQKPATQDEIIVYGNY 467 Query: 685 QRLLQIFSKILSNAMDFSSKGS----------TVILKAARDNGDFIFSVKNNGSSIPEDM 734 QRLLQ+ ++ NA+ F+ +G ++++ G V + G + D Sbjct: 468 QRLLQVMLNLVGNAIKFTHEGGISISMELIKKKIVIQNRELPGLVKIRVADTGIGVSLDK 527 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 +F F V Q G GLGL+I + + G V+ S EG+ +T+ IP Sbjct: 528 QDKLFQSFFQVDGDRTRQYGGTGLGLAISQKLVEAMRGTVNFYSMGEGLGSTVTFTIP 585 >gi|284989871|ref|YP_003408425.1| PAS/PAC sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284063116|gb|ADB74054.1| PAS/PAC sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 408 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 23/254 (9%) Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 T+ EA R + +K+ FV +S+ELR+PLT+I+G+ +L+ SL + +Y+ + Sbjct: 159 TDMTEA-RATERMKDQFVSLISHELRTPLTSILGYLELVLDDP--SLGDEPRRYLGTVER 215 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674 ++ LL LV D+L A VDAG L ++ L ++ ++++ + + V + D Sbjct: 216 NAQRLLRLVGDLLFTAQVDAGRFSLQPESVDLAAVVRAAEETVRVTAAATGVEVVVDVPD 275 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI----------- 720 G L D RL Q ++SNA+ F+ G V L A R G + Sbjct: 276 GGL-VVPGDAVRLGQACDNLVSNAVKFTPAGGRVTLALRPAWRTAGGAVVATPGDDAVRV 334 Query: 721 --FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +V + G IP +F RF S A R GVGLGL+I + H G + ++S Sbjct: 335 ARLAVSDTGIGIPAGEQGQLFARFFRASTARRHAVPGVGLGLAITRAIAAAHDGSLEVAS 394 Query: 777 SDEGVTTINCRIPS 790 + TT +P Sbjct: 395 VEGRGTTFTLTLPG 408 >gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb18] Length = 2333 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 32/259 (12%) Query: 552 ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 +RAL EA RK A + K+ F+ +VS++LR+P+ +IG T+LL Sbjct: 1788 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1847 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND-LLNE 653 K + SL+ +Q+ YV+ I + LL L+NDILD + ++AG MK+ + L D +L Sbjct: 1848 KKT---SLDREQNGYVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEA 1904 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--L 710 V+ T H I+ + + V D RL QIF +LSN+ F+ +GS + Sbjct: 1905 VRALCYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVNAK 1964 Query: 711 KAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765 + ++G + K + G IP + +F F S A R G GLGLSI ++ I Sbjct: 1965 SSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 2023 Query: 766 -NLHGGHVSISSSDEGVTT 783 ++ GG + + S+EGV T Sbjct: 2024 EDVLGGKIWL-QSEEGVGT 2041 >gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1436 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 V+++D R L +A ++K+ F+ ++S+E+R+P+ IIG + L LKT Sbjct: 677 LVDISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQ--- 733 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L KQ Y+ + + T LL ++NDILD + ++AG + L L++++ V A Sbjct: 734 -LTPKQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQ 792 Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARD 715 K HE + + ++ G + D RL QI + ++NA+ F+ +G + +++ + Sbjct: 793 KAHEKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIERTGE 852 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 FSV++ G + + +F F R+ G GLGL+I + L GG + Sbjct: 853 KLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIW 912 Query: 774 ISS 776 + S Sbjct: 913 LES 915 >gi|332882289|ref|ZP_08449917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679673|gb|EGJ52642.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1362 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 10/250 (4%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + + V + +A+R L EK+ + + +E + F ++S+E+R+P+T I+ + L+K K Sbjct: 793 VVLLQVKEHFKAKRIL-EKHRQVEELNEARIQFFMNISHEIRTPMTLIL--SPLMKLMKS 849 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + Q Y I +S +L L+N ++D ++ G +L Y + + +N + + Sbjct: 850 DKDETHQRSY-SLIYQNSQRILRLINQLMDARKIEKGQFRLKYHKVEMVGFVNNLYELFE 908 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717 T H I + D + D Q ++ +LSNA F+ G V ++ +G Sbjct: 909 TTAHNRGITFTFVHDMERMDVCVDPQNFDKVVMNLLSNAFKFTPDGGVVTIELKDVSGDI 968 Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 DF SV ++G IP+ VF RF S G G G+GL++ + + LH G + Sbjct: 969 PGERDFRLSVTDSGVGIPDQEKSRVFERFYSGKWGGDYVGTGIGLNLTKLLVELHEGRIW 1028 Query: 774 ISSSDEGVTT 783 ++ EG T Sbjct: 1029 AENNPEGQGT 1038 >gi|295676004|ref|YP_003604528.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. CCGE1002] gi|295435847|gb|ADG15017.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. CCGE1002] Length = 951 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 115/221 (52%), Gaps = 13/221 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-------SLNSKQSQYVEYISAS 616 +++ ++NS + +S++LR+PLT I+GF+ +L + G S + + VE I Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQGRGGQGPTDPQSAAHRNDELVEAIHEE 735 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + + +V ++LD+A + AG ++LN +L + + ++ + ++ +++ + +D Sbjct: 736 ALRMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACRRVLADHPVQVTLPADLP 795 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF---SVKNNGSSIPE 732 L D + ++FS + NA +++ G+ + + A + D G F ++ +NG+ +P Sbjct: 796 LLHL--DAVLMERLFSNLFENAAKYTASGTPLAIGAQQIDAGGVPFVRVTIDDNGAGLPA 853 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 M VF +F + G+GLGL+I + + HGG + Sbjct: 854 GMEARVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 894 >gi|256829874|ref|YP_003158602.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579050|gb|ACU90186.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 678 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 9/227 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL I+G LL + L +++Q ++V SS L L+ DIL Sbjct: 312 KSEFLANMSHEVRTPLNGIVGMLQLLSHTYL---DAEQKEFVFTAIRSSKRLTQLLTDIL 368 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 +++ ++AG + + DL + V+ + + D + S V D RL Sbjct: 369 EISRIEAGKLDVVAQEFHFVDLRDSVRDLFVIPAKAKGLELSFEIDEAIPSHVVGDEGRL 428 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF-- 742 QI ++ NA F+ +GS + D G + F+V++ G IP + + +FN F Sbjct: 429 RQILFNLVGNATKFTPRGSVQVTARRLDQGGQMHVEFTVQDTGVGIPRERQEDIFNAFTQ 488 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V + Q GVGLGL+IV +++ G +++ S TT+ R+P Sbjct: 489 VDGSAVRQHGGVGLGLAIVRRLVDMMDGTITVQSEPGHGTTMTVRVP 535 >gi|83310510|ref|YP_420774.1| sensor kinase silS [Magnetospirillum magneticum AMB-1] gi|82945351|dbj|BAE50215.1| Probable sensor kinase silS [Magnetospirillum magneticum AMB-1] Length = 502 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 7/250 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 + + RAE L + L + + F +++L+ P+ ++ F+ LL+ L Sbjct: 247 EIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAVDLE 306 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + Y+ +I A + + NLV D+L+ + AG L +T+ +L+ V QS+ ++ Sbjct: 307 GEGKDYLRFIIAEAQRMSNLVRDLLEYSR--AGGAGLTVATVDCAELVESVVQSLRPRIE 364 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIF 721 + R+++ G L S ADR +L Q+F +L NA+ + ++ + V + A RD + F Sbjct: 365 QKGARLEI---GPLPSLSADRGQLYQVFHNLLGNALKYGAENAVPEVRISAERDGAAWRF 421 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V +NG I VF F G G+GL+I + + HGG + ++S+ Sbjct: 422 AVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQG 481 Query: 782 TTINCRIPSK 791 +T IP + Sbjct: 482 STFFFTIPDQ 491 >gi|53719636|ref|YP_108622.1| putative two component regulatory system sensor kinase [Burkholderia pseudomallei K96243] gi|126452082|ref|YP_001065910.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|134282766|ref|ZP_01769469.1| sensor histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|242314513|ref|ZP_04813529.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|254188507|ref|ZP_04895018.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254259210|ref|ZP_04950264.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|254297923|ref|ZP_04965376.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|52210050|emb|CAH36024.1| putative two component regulatory system, sensor kinase [Burkholderia pseudomallei K96243] gi|126225724|gb|ABN89264.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|134245852|gb|EBA45943.1| sensor histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|157807017|gb|EDO84187.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157936186|gb|EDO91856.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|242137752|gb|EES24154.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|254217899|gb|EET07283.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 693 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|187775852|ref|ZP_02798687.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4196] gi|188024557|ref|ZP_02997155.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4113] gi|189010261|ref|ZP_02806017.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4076] gi|189401974|ref|ZP_02779320.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4401] gi|189403035|ref|ZP_02792497.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4486] gi|189404265|ref|ZP_02788237.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4501] gi|189405993|ref|ZP_02825630.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC508] gi|208808659|ref|ZP_03250996.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4206] gi|208816058|ref|ZP_03257237.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4045] gi|208822610|ref|ZP_03262929.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4042] gi|209396858|ref|YP_002269719.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4115] gi|217326169|ref|ZP_03442253.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. TW14588] gi|12514260|gb|AAG55540.1|AE005293_4 sensor protein torS (regulator TorR) [Escherichia coli O157:H7 str. EDL933] gi|13360608|dbj|BAB34571.1| sensor protein torS [Escherichia coli O157:H7 str. Sakai] gi|187770408|gb|EDU34252.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4196] gi|188018115|gb|EDU56237.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4113] gi|189001171|gb|EDU70157.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4076] gi|189358204|gb|EDU76623.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4401] gi|189363312|gb|EDU81731.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4486] gi|189366555|gb|EDU84971.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4501] gi|189377093|gb|EDU95509.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC508] gi|208728460|gb|EDZ78061.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4206] gi|208732706|gb|EDZ81394.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4045] gi|208738095|gb|EDZ85778.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4042] gi|209158258|gb|ACI35691.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4115] gi|209774100|gb|ACI85362.1| sensor protein torS [Escherichia coli] gi|209774102|gb|ACI85363.1| sensor protein torS [Escherichia coli] gi|209774106|gb|ACI85365.1| sensor protein torS [Escherichia coli] gi|217322390|gb|EEC30814.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. TW14588] gi|320192509|gb|EFW67151.1| Sensor protein torS [Escherichia coli O157:H7 str. EC1212] gi|320637860|gb|EFX07652.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. G5101] gi|320653760|gb|EFX21834.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|326338564|gb|EGD62391.1| Sensor protein torS [Escherichia coli O157:H7 str. 1125] gi|326347794|gb|EGD71510.1| Sensor protein torS [Escherichia coli O157:H7 str. 1044] Length = 904 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|327539007|gb|EGF25641.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 860 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 19/237 (8%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 IKN F+ ++S+E+R+P+ I+G +L+ S SL+ +Q Y+ I S+ LL ++NDI Sbjct: 320 IKNQFLANMSHEIRTPMHGILGTAELMTRS---SLDEQQRHYMYMIQTSAKGLLTVLNDI 376 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQR 686 LD + VD+G M L L DLL++ ++ K E +++ + G V D R Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAVVNLKNEEVDLQFQP-PVGVPEIIVGDPTR 435 Query: 687 LLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVKNNGSSIPEDM 734 L Q+ ++ NA+ F+ +G + L + G I F++ + G + + Sbjct: 436 LRQVLINLVGNALKFTEQGRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQQ 495 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F RR G GLGLSI + L GG + +SS ++ IP Sbjct: 496 QAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIP 552 >gi|323693831|ref|ZP_08108023.1| hypothetical protein HMPREF9475_02886 [Clostridium symbiosum WAL-14673] gi|323502134|gb|EGB18004.1| hypothetical protein HMPREF9475_02886 [Clostridium symbiosum WAL-14673] Length = 450 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS---- 607 RAL + +RK +N FV S+ELRSPL I L++ G N Q+ Sbjct: 198 RALQPARDGIRK----QNEFVAAASHELRSPLAVIRSSLSALESELPGETGNQNQTVTLR 253 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Q ++ + LV D+L LA+ DAG +L+Y+ + LL E ++ E NI Sbjct: 254 QLIKNSDRECRRMARLVGDMLLLASSDAGNWELHYTQTEPDTLLIEAYEAFLPLCREKNI 313 Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------- 718 + + + +ADRQRL Q+ + +L NA+ ++ G V LK + G Sbjct: 314 NLILELPKEPFPPLLADRQRLEQVITILLDNAISYTPAGKEVRLKMYKKEGSRRISAGYF 373 Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V + G +P+++ + +F+RF +A R ++ GLGLSI + +HGG +++ Sbjct: 374 RTVIEVADTGKGVPDEIKQRIFDRFYRGDASRKDKKHFGLGLSIAKELTEMHGGTLAVHD 433 Query: 777 SDEG 780 + G Sbjct: 434 NPGG 437 >gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] Length = 468 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 15/237 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A + L E A +A K+ F+ ++S+E+R+P+ IIG L + +L +Q +++ Sbjct: 16 ANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDT---NLTEEQREHL 72 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + ++ S+ LL++VN ILDLA ++AG ++L + + DLL+ + + + ++ + Sbjct: 73 DTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQKDLDMS 132 Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFS 722 +S + D RL Q ++ NA+ F+ +GS + + D +FS Sbjct: 133 WEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQRREEEAVCVLFS 192 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 VK+ G I ++ K VF F S A R G GLGLSIVE + + GG + + S Sbjct: 193 VKDTGIGISQEKQKEVFKAF-SQADTSITRLYGGTGLGLSIVERLVAMMGGRIWLES 248 >gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 950 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K + +++ ++ KN F+ + +E+R+PL + G T LL + LN +Q ++V I +S Sbjct: 276 KQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNPQQEEFVNIIRSSG 332 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676 LL ++N+ILD + ++A ++L L + EV + + + + + +I Sbjct: 333 ENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLELAYLIEPNT 392 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSVK 724 + V D RL QI + +L NA+ F+ KG V+ +A+ N + F+VK Sbjct: 393 PSAIVGDSTRLRQILANLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTLANYELRFAVK 452 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + G I C +F F R+ G GLGL I + L GG + + S++ Sbjct: 453 DTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKMWVHSTE 508 >gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 606 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 9/238 (3%) Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQ 608 R L ++ E + A+ + K+ F +S+ELR+PL I+G++ L+ G++NS+ + Sbjct: 208 RFLAKEREMRKDAERVNHSKDEFFAMLSHELRNPLNAILGWSQLILQ---GTMNSESVRK 264 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I ++ I L+ D+ +++ + AG + L I L+ L V S +R Sbjct: 265 GIETIERNAKIQNKLIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSAVPVAEAKKVR 324 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 ++ I D ++G +AD R Q+ +LSNA+ F+ V + R VK++G Sbjct: 325 LRKIIDSEVGFVLADENRFQQVLWNLLSNAIKFTPAEGEVEIHVRRAGSRAEVKVKDSGI 384 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVG--LGLSIVESFINLHGGHVSISSSDEGVTTI 784 I + VF+RF R+ +G LGL+IV+ + LH G V S+ EG ++ Sbjct: 385 GIKREFLPHVFDRFRQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAESNGEGKGSV 442 >gi|150016429|ref|YP_001308683.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902894|gb|ABR33727.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 613 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 130/265 (49%), Gaps = 12/265 (4%) Query: 539 MLTFVNVTDSVRAE---RALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592 M ++VT+ R E +++ E+ + L ++ D I+ F ++S+ELR+P++ I Sbjct: 317 MKVAIDVTEKKRMEELQKSVEEERKKLYEIKEYDRIRTEFFSNISHELRTPISVIFSALQ 376 Query: 593 L----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 + LK + + + +Y + + + +L L+N+I+D+ +D+G +N I + Sbjct: 377 IHELRLKDCIFENRSIDKYKYTKIMKQNCYRILRLINNIIDITKIDSGYFNINEHNIDII 436 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L+ + S+A + + + ++ + D +++ +I ILSNA+ F+S G + Sbjct: 437 ALIENITLSVADYIENKGLSLIFDTNVEEKIMSCDPEKIERIILNILSNAVKFTSSGGKI 496 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766 + +K+ G IP+D S+F RF V + G G+GLS+V+S + Sbjct: 497 TVSIEDCYDKICIKIKDTGRGIPQDKLNSIFERFIQVDKSLARDHEGSGIGLSLVKSLVE 556 Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791 LHGG +S+ S T IP K Sbjct: 557 LHGGVISVKSKINYGTEFVIYIPCK 581 >gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 656 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 11/225 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ S+EL++PLT++ GF +L +T G S + ++ ++ L LVND+ Sbjct: 437 KDEFIALASHELKTPLTSMSGFLQILERTVPDGIAKSFAEKALKQLAK----LNELVNDL 492 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQR 686 D++ + AG ++LN+ L+DLL+E+ + T H N +K+ +DG+L D+ R Sbjct: 493 FDISKIQAGKLQLNFEPFDLSDLLDEITDTFEQTHPHYN---LKMAADGEL-LVSGDKMR 548 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L Q+ + +L NA+ ++ V + A R + SVK+ G I + + +F++F Sbjct: 549 LEQVLTNLLGNAVKYAPDAREVSMIAIRTGNEVRISVKDQGPGILPENQQHIFSQFYRVK 608 Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + ++ G+GLGL I + I+ HGG + + S+ T +P+ Sbjct: 609 EQERKTSGLGLGLYISKDIIDRHGGRIWVESTPGHGATFTFSLPA 653 >gi|209774104|gb|ACI85364.1| sensor protein torS [Escherichia coli] Length = 904 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1289 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 138/264 (52%), Gaps = 29/264 (10%) Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 ER + ++ E L A D++K++F+ ++S+E+R+P+ IIGF +L + + Sbjct: 881 ERTVNQRTEELEIAKSKAEHSDKLKSAFLANMSHEIRTPMNAIIGFLHILDNKDISDVER 940 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIAT 660 +Q ++ I SS L+ L++DILDL+ ++AG +++ + +L +E+ ++S+ + Sbjct: 941 EQFNHI--IRQSSKSLMALIDDILDLSAIEAGEAEISPQPCNVGELCDELGALFRESL-S 997 Query: 661 KMHENNIRIKVISD-------GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + +NN+ ++ D G + D RL QI ++SN++ F+ +G + + Sbjct: 998 QDKKNNVDFRLTGDVPDHFLVGGATLVLIDPLRLKQILWNLISNSIKFTDEGEIHLGYSV 1057 Query: 714 RDNGDFI------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + + + F V++ G IP++ + +FNRF + A + RG GLGL+I ++ Sbjct: 1058 SQDKEMLEKASIEFIVQDTGIGIPKEEHQQIFNRFHKLDKAGKKLYRGTGLGLAITQTLT 1117 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L G +++ S+ TT P Sbjct: 1118 QLMEGRITVDSTPGLGTTFKVTFP 1141 >gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 939 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 28/247 (11%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E A A++ K+ F+ ++S+ELR+PL I+G+ +L+ S+ L+ + + ++ I Sbjct: 434 LKEAKVAADAANKAKSDFLANMSHELRTPLNGILGYAQILRRSR--GLSEQDLRGIDVIH 491 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL L+ND+LDLA ++A M+ + + L L + + E I + D Sbjct: 492 RSGAHLLTLINDVLDLAKIEAQAMEAHANDFHLPSFLRSTAEICRIRAEEKGIALVYTPD 551 Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----------------------STVILK 711 +L + VAD +RL Q+ +L NA+ F+ KG S Sbjct: 552 PELPTDVVADERRLRQVLINLLGNAVKFTEKGRVSFTIKRLGDGPRPPYGSAPDSAANQS 611 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769 A R F +++ G+ I D +F F A G+RR G GLGL+I + + L G Sbjct: 612 APRRTHRVRFEIEDTGTGISPDQLDQIFLPF-KQASDGKRRVDGTGLGLAISQRIMKLLG 670 Query: 770 GHVSISS 776 + + S Sbjct: 671 SSIEVRS 677 >gi|149277545|ref|ZP_01883686.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149231778|gb|EDM37156.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 656 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 13/230 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K SF+ +S+E+R+PL ++IGF++ L SKL + Q + ++ I+ SS ILL++VN +L Sbjct: 285 KTSFLAGMSHEIRTPLNSVIGFSEQLGQSKL---DDTQREQLDAITNSSKILLDIVNQVL 341 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRL 687 D + + G M + + D+L EV +++ + I I K S D RL Sbjct: 342 DFSKFETGKMVFERAPFIPQDILEEVFSTLSIQAVNKGISIAKSFDISPELSVKGDALRL 401 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 Q+ +L NA+ F+ +G V +KA +D I VK+ G I ++ +F F Sbjct: 402 KQVLINLLGNAIKFTKEGE-VTIKATVSSDKKDQIRLIVWVKDTGVGISKENVNMIFGEF 460 Query: 743 --VSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V++A + ++G GLGL+I + I GG++ ++S + + +P Sbjct: 461 SQVASAQKDASQKGTGLGLAISKKIIEQQGGYIRVTSEEGKGSVFKFSLP 510 >gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 948 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 12/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 ++VTD R AL E +A K F+ +S+E+R+P+ I+G +LL+ + +L Sbjct: 363 IDVTDVHRQAEALHEAKDAAEADLRAKEGFLAMMSHEIRTPMNGILGLVELLRNT---AL 419 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q + + S L +++DILD A ++AG + + + + L +LL+ V + + Sbjct: 420 TPAQHRMLTLAHESGHALAQILDDILDYARIEAGRLAIVPAPVDLRELLDSVSSLLLPQA 479 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + ++++V +S + AD R+ QI +L NA+ F+ +GS V L A+ + D Sbjct: 480 QQKGLQLRVHVSADVPATVRADGIRMRQILFNLLGNAIKFTDRGS-VTLHASAETSDGET 538 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + V++ G I +F F+ RR G GLGL+I S + GG + + Sbjct: 539 AALLLEVQDTGIGIASADMPRLFTPFMQGERSVTRRMGGTGLGLAISRSLAAMMGGSLVL 598 Query: 775 SSSDEGVTTINCRIP 789 +S + TT + R+P Sbjct: 599 TSEEGTGTTASLRVP 613 >gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1784 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ V++T+ L E A + K F+ ++S+E+R+P+ IIG + L + Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712 + K I + + + + D RL Q+ +++NA+ F+ +G + +++ Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV+++G + E +F F R+ G GLGL+I + + L GG Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248 Query: 771 HVSISS 776 + + S Sbjct: 1249 KIGVES 1254 >gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] Length = 1158 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 17/238 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL +I+ + LL +K SL+ K+ ++ + I S + LL L+N+IL Sbjct: 473 KSEFLANMSHELRTPLNSILILSQLLADNKNKSLSEKEVEFAQNICNSGSDLLELINEIL 532 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQR 686 DL+ V++G + L + L+ + + + + I+ KV KL + DRQR Sbjct: 533 DLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTTVHTDRQR 592 Query: 687 LLQIFSKILSNAMDFSSKGSTVILK--AARDNGDF-----------IFSVKNNGSSIPED 733 L QI +LSNA F+S V K AA ++ F SV + G IP++ Sbjct: 593 LEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDTGIGIPQN 652 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F F V + + + G GLGLSI GG + + S ++ +T IP Sbjct: 653 KQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTFTLFIP 710 >gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella dagmatis ATCC 43325] gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella dagmatis ATCC 43325] Length = 617 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 6/250 (2%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V++ V AE+ L+ + + K K + +S+ELR+PL IIG + +L S+ L Sbjct: 98 VSERVLAEKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSE---LTD 154 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ Y++ I S+ L ++ +DI+DL +DA ++L+ + L LL ++ + Sbjct: 155 KQRDYLKTIHISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAAD 214 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + ++I L ++ D R+ QI ++ NA+ F+SKGS V L + + + F V Sbjct: 215 KKLCFQLIESSPLPQWLMLDYARVSQILWNLIGNAVKFTSKGS-VQLNVSTNENNIYFIV 273 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP++ VF + GQ+ G G+GL++ ++ L GG +++ S Sbjct: 274 SDTGVGIPQEELHRVFEMYYQVKSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELGKGA 333 Query: 783 TINCRIPSKE 792 + +P KE Sbjct: 334 SFTLTLPLKE 343 >gi|160884987|ref|ZP_02065990.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483] gi|156109337|gb|EDO11082.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483] Length = 482 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++ D K +F+ +S+EL++P+ I+ +LL+ ++G+LN +Q Q I +S LL Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLNLLEDKRVGALNDEQEQLSRSIKENSERLL 313 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D +++ + + +LSNA+ +S + VI+ A +D V++ G I +S+F+ Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGARQDGNIIELYVQDFGKGIDPRYHQSIFD 433 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 R+ + +G GLGLSI + F+ HGG +++ S Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468 >gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 972 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 12/225 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +IK+ F+ ++S+ELR+PL +IGF L+KT L++ Q Y++ I S+T LL Sbjct: 337 QEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTP----LHASQLDYIKTIDRSATNLL 392 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILD + ++AG M+L L + + E IA + + + D + V Sbjct: 393 GIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHV 452 Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ QI + ++ NA+ F+ GS VIL A D+ V + G I + + Sbjct: 453 SGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQE 512 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +F F RR G GLGL I + IN GG + +SS E Sbjct: 513 YLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSE 557 >gi|319952621|ref|YP_004163888.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM 14237] gi|319421281|gb|ADV48390.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM 14237] Length = 822 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 127/240 (52%), Gaps = 13/240 (5%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 +E+L K+ E + VS++LR+PL I G+++L++ + SL KQ Y++ + +++T Sbjct: 314 SESLLKSRE---QLISTVSHDLRTPLNTITGYSELMENT---SLTGKQIGYLKNVKSAAT 367 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677 + NLVND+LD + ++AG +K+ +L DL+ E Q++ I ++++ D KL Sbjct: 368 YVDNLVNDLLDFSKLEAGKLKIENIPFLLPDLIQETAQNLEEFYKNKPIELQIVIDKKLH 427 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPED 733 + + D R+ QI + ++SNA F+ G ++ + ++ + ++G I ++ Sbjct: 428 KTLIGDPFRIRQILTNLISNAYKFTQDGFIKVVATVTIENNAVYKTRIQVIDSGIGIEKE 487 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +F F +++ G GLGL+I + L G +++ S + +T IP K Sbjct: 488 KQEHIFKEFAQADDSTEKKYGGYGLGLTISKKLTELLQGTINLKSDKDQGSTFTFTIPLK 547 >gi|256376438|ref|YP_003100098.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920741|gb|ACU36252.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 549 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +VT A L E N L +A +K FV VS+ELR+PLT ++ F +++ + G Sbjct: 299 FRDVTADTAARVELEESNRVLAEAAAVKGRFVATVSHELRTPLTAVLAFAEMMPGA--GP 356 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 LN++ ++E I ++ L+ LV+D+L L+ +++ + L+ + + + LL E + A Sbjct: 357 LNAEHLAHLEVIRRNTARLVRLVDDLLLLSRLESHRLPLSLAEVDVAGLLAEAEHDHANP 416 Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 I + V DG D RL Q+ ++ NA+ F+ G V +++ D ++ Sbjct: 417 AESAGIELVVEPVDGP--KVRGDAVRLSQVLDNVIGNALKFTPAGGRVRVRSQVDPTGWL 474 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +V + G IP +F+ F + G GLGLSI + LHGG++ + +++ Sbjct: 475 ITVSDTGIGIPAADLPDLFDVFRRAGNSTGVPGSGLGLSICRQIMALHGGNIRVRAAEGR 534 Query: 781 VTTINCRIP 789 TT+ +P Sbjct: 535 GTTVELTLP 543 >gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] Length = 668 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 8/265 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 II L NA +T T++ R + A + E +A +K+ F+ VS+ELR+PL + Sbjct: 250 IIGLTNAAIDITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 309 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ LL ++ +E I S+ ++L++D+LD++ + +G + L + L Sbjct: 310 LGWAQLLAMRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 367 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D+L +++I + I I + D RL Q+F +L+NA+ F+ +G Sbjct: 368 ADVLERARETIEPMARQKQIAIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 426 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + + + +V++ G I VF+RF RR G+GLGL+I + + Sbjct: 427 IRVCVQASPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLV 486 Query: 766 NLHGGHVSISSSDEGV-TTINCRIP 789 LH G ++ +S+ + TT+ +P Sbjct: 487 ELHHGRITAASNGANLGTTMAVTLP 511 >gi|320664373|gb|EFX31524.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. LSU-61] Length = 904 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|320659602|gb|EFX27165.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. USDA 5905] Length = 904 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|171914541|ref|ZP_02930011.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 385 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ + IK+ F+ +++ELR+PL I+ +T++L TS S ++ +Q + I S+ Sbjct: 117 KRQNSIKDHFLAVLAHELRTPLQAIMAWTEVLATSS--SAPAELAQGLAVIRESAKGQSR 174 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ D+LD++ + +G ++L + L ++ + + ++ LG A Sbjct: 175 LIEDLLDVSRMVSGNIRLEVQPVDLAAIIQLSVDMLKPLACSREVLVQTSLSRSLGMAHA 234 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL QIF +L+NA+ F+ G + L F F + +NG I VF+RF Sbjct: 235 DPIRLHQIFGNLLTNAIKFTPPGGHIHLHLDGTPSHFTFKIADNGQGINAAFLPYVFDRF 294 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + RR G+GLGLSIV+ + LHGG + +S G Sbjct: 295 LRGDTGTTRRHDGLGLGLSIVKHLVELHGGSIQAASDGLG 334 >gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 940 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 23/235 (9%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E A K+ F+ +S+E+R+P+ ++G +LL+ + L+ +Q +YV + Sbjct: 414 ALARAKEEADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEAT---PLDEEQREYVSVV 470 Query: 614 SASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATK-----MHEN 665 S +LL+L+ND+LDL+ ++ G + L ++ T + L + + +A + + E Sbjct: 471 RDCSNLLLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEF 530 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + + + G D RL Q+ +L+NA+ F++KG + L+A + F V++ Sbjct: 531 SPSVPPVLRG-------DPVRLRQVLLNLLNNAVKFTAKG-CITLRAYVTGNEITFEVED 582 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSS 777 G I E++ S+F F + H G G GLGLSI + L GG +S ++ Sbjct: 583 TGPGILEEIRGSIFKPF-TRGHSGTDSMHGGAGLGLSICRRLVELMGGGISFETT 636 >gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] Length = 872 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L + E A++ K+ F+ ++S+E+R+PL IIG T++L S L++ Q + Sbjct: 364 EQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSH---LSAAQKDILN 420 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + ASS LL L+NDILDL+ +++G + L+ + +++ + + + + + + V Sbjct: 421 DVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHV 480 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 +D D R+ Q+ ++SNA+ FS +G+ ++ + ++ V + G I Sbjct: 481 EFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVSVVEHHGLSIEVADTGVGI 540 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ED +F F RR G GLGL+I ++L G +S+ S Sbjct: 541 AEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVES 588 >gi|323139164|ref|ZP_08074220.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395547|gb|EFX98092.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 787 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 18/248 (7%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YV 610 ER TE +AL AD K+ F+ +++ELR+PL I +L+ L + + S+ V Sbjct: 399 ERKKTE--QALIAADRRKDEFLATLAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALV 456 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----EN 665 E I L+ LV+++L+++ + G ++L I DL ++Q++ T + Sbjct: 457 EIIDRQVGHLIRLVDELLEVSRITRGKIELMIERI---DLAAVIRQAVETSRPVIDRGGH 513 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R++ + D L AD R+ Q+F+ +L+NA ++ G ++++A R + + +V + Sbjct: 514 ALRVE-LPDAPL-PLDADPVRMTQVFTNLLNNAAKYTEPGGEIVVRADRRGREAVITVTD 571 Query: 726 NGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV- 781 +G IP +M VF+ F R Q G+G+GL++V S + L GG V S+ G Sbjct: 572 SGLGIPPEMLPRVFDLFTQVDRTLGRAQ-GGLGIGLALVRSLLKLQGGSVEAESAGLGRG 630 Query: 782 TTINCRIP 789 TT R+P Sbjct: 631 TTFTIRLP 638 >gi|172038850|ref|YP_001805351.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700304|gb|ACB53285.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 854 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 25/257 (9%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ + ++ L KA+E KN + +++ELR PL N++GF DLL + SL K+ ++ Sbjct: 369 EQIVEQRTNELEKANEEKNQILDKINHELRIPLNNVLGFLDLLGSEH--SLTEKKDNSLQ 426 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S LL L N IL+ + V +G + + + + L +L+ V + + + + Sbjct: 427 IIQENSQYLLRLFNQILEFSKVTSGEILIQCNIVNLENLVTTVLKQFEQQAEVKKLTLSY 486 Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--------- 721 D ++ ++ D +L++I S +L NA+ FS++G + ++ DN ++ Sbjct: 487 SIDSEVFPYLKIDESKLIKILSNLLDNAIKFSNQG-IITIRVFCDNQAWLLDNEIDDYTD 545 Query: 722 ---------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++++G+ IP ++ + VF+ F + +GVGLGLSI ++L GG + Sbjct: 546 DNFQKNLWIEIEDHGNGIPIEIQEKVFDPFFRSK---DNKGVGLGLSITHKLVDLMGGKI 602 Query: 773 SISSSDEGVTTINCRIP 789 + S T + P Sbjct: 603 YLKSQLGQGTIVQFHFP 619 >gi|169825762|ref|YP_001695920.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] gi|168990250|gb|ACA37790.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41] Length = 466 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 5/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ +++ELR+P+T I G+TD+L L + + +Y+ I + L L+ D+ Sbjct: 234 REEFLSSIAHELRTPITFIKGYTDILYKRDLSA--QDRQKYLAIIREETNRLSRLIKDLF 291 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA +D + + L +K ++ E +I +V + L + AD RL Sbjct: 292 DLAKMDENSFIIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFEVCCENGL-TLWADEARLE 350 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI +L+NA+ + +G T + + NG +++ G IP +F RF V + Sbjct: 351 QIIINLLNNALTYCGQGDTTTVNVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKS 410 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV+ + HGG V++ S Sbjct: 411 RSRALGGSGLGLAIVKELVQAHGGEVTVKS 440 >gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans OS217] Length = 950 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 12/225 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A +IK+ F+ ++S+ELR+PL +IGF L+KT L++ Q Y++ I S+T LL Sbjct: 315 QEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTP----LHASQLDYIKTIDRSATNLL 370 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILD + ++AG M+L L + + E IA + + + D + V Sbjct: 371 GIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHV 430 Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736 + D R+ QI + ++ NA+ F+ GS VIL A D+ V + G I + + Sbjct: 431 SGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQE 490 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 +F F RR G GLGL I + IN GG + +SS E Sbjct: 491 YLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSE 535 >gi|237734688|ref|ZP_04565169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382016|gb|EEO32107.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 639 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608 + E A+ KNE LR + ++ +S++LR+PLT+I G +L + GSL+ +K+ Q Sbjct: 398 KEEAAIEAKNERLRA------NLLRSISHDLRTPLTSISGNASVLINNS-GSLDENKKMQ 450 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 E I S L+NLV ++L + ++ G M L+ T ++ +++NE I+ K E+ I Sbjct: 451 LYEVIYDDSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIE 510 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 +K + L D ++Q+ I+ NA+ ++ KGS + ++ + + DF+ + ++G Sbjct: 511 VKANDEFILAKI--DAGLIIQVIINIVDNAIKYTPKGSMISIETFK-HKDFVEIQIADDG 567 Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + I + + +F F + H RRG+GLGL++ ++ I HGG++++ + T + Sbjct: 568 AGISDKDKEKLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFS 627 Query: 786 CRIPSKE 792 +P KE Sbjct: 628 FTLPIKE 634 >gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 866 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 100/414 (24%), Positives = 191/414 (46%), Gaps = 36/414 (8%) Query: 395 PNGQTLHVIVTSNPRGG-TIWMFENLTVQVDL-------ETKYNTLVKVQGETIDHLSEG 446 P+G+ LH+ VTS R G + + +N+T + + E + T+++ + Sbjct: 198 PDGRVLHMAVTSAIRSGQVVGVTQNITERKRMVEAVEANERRLRTIIETTPLPL------ 251 Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENR---LSPGTHIRNIAATCSRYYNESDGWDLFAAI 503 V + ++ +N +FR+L+ ++ +S GT ++ E+ G D + Sbjct: 252 VITRAKEAKVLYANSSFRALFDIPDDYDGVISSGTFYQH--PEDRERLIETLGRD---GV 306 Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEAL 562 + +F+ ++ G S + +++ L ++ VN +V+ A L +A Sbjct: 307 VRNFEALGRTWSGRNFWAS---VTAAVLELDGEPSLFVAVNDITAVKKHEAELYAAKDAA 363 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A K+ F+ +S+E+R+P+ II LL + L ++Q ++E +++S L+ Sbjct: 364 EAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDT---DLTAEQRDWLEIVTSSGDTLMT 420 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++NDILD + +++G + + L L+ V + + + E + I V G G Sbjct: 421 VLNDILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGLSISVHYGAGVPGVIR 480 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKS 737 AD RL Q+ ++ NA+ F+ G + L+ R +GD + F+V++ G IP + Sbjct: 481 ADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFAVRDTGIGIPAEALTR 540 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F RR G GLGL I + +NL GG + + S + TT +P Sbjct: 541 LFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGYGTTFTFTLP 594 >gi|311031012|ref|ZP_07709102.1| two-component sensor histidine kinase [Bacillus sp. m3-13] Length = 745 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 2/213 (0%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K++ +K + +VS++LR+PLT+II +T+LLK ++L + +S Y+E I S L L Sbjct: 520 KSERLKTELITNVSHDLRTPLTSIITYTELLKKNELTT--EDRSAYLEIIDRKSQRLKGL 577 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 + D+ +++ + +G ++L + LN LL + + + E+N++ +V + K + D Sbjct: 578 IEDLFEVSKMASGNIELVKERVDLNQLLQQALAEYDSSLKESNLQFRVANTDKPLYAMVD 637 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q++ ++F ++ N + +S + S V ++ + N + KN D + ++ RF Sbjct: 638 GQKMWRVFDNLIGNIVKYSLENSRVYIQVQQFNDKAKITFKNVSKYELNDQSEELYERFK 697 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+I +S I+LH G++ I + Sbjct: 698 RGDTSRNTEGSGLGLAIAKSIIDLHEGNLDIET 730 >gi|317132921|ref|YP_004092235.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315470900|gb|ADU27504.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 476 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 13/233 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L AD IKN F+ VS+ELR+PLT I G+ + ++ G ++ + + I+ + L Sbjct: 248 LGTADRIKNDFISSVSHELRTPLTAIKGWAETIQGCAPGDTDTIH-KGMRVITDETGRLS 306 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGKLG 678 +V D+LD + + +G ++ I D+L E+ +++ + + H + L Sbjct: 307 AMVEDLLDFSRMQSGRFRMAIDKI---DILAEMGEAVLMFSDRAHREGLTFIYNEPASLP 363 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP-EDMCK 736 + DR RL Q+F IL NA +S G V + A D G+ + V + G IP D+ + Sbjct: 364 PMMGDRNRLRQVFVNILDNAFKYSDAGGVVKVDAI-DCGNHVRIIVSDTGCGIPARDLSR 422 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F NA RRG G+GL++ + + LHGG + I+S + T + +P Sbjct: 423 VKQKFFKGNA---TRRGSGIGLAVADEIVCLHGGTLEIASEEGKGTAVTITLP 472 >gi|290954713|ref|YP_003485895.1| sensor kinase [Streptomyces scabiei 87.22] gi|260644239|emb|CBG67318.1| putative sensor kinase [Streptomyces scabiei 87.22] Length = 232 Score = 97.8 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 7/210 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + + V +++ELR+PLTNI G+ ++ + L + + + + +L ++++D+ Sbjct: 5 RKAMVSDIAHELRTPLTNIRGWLEVTRDG----LVEPDLELIASLHDEALLLQHIIDDLQ 60 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA DAG + L+ + +D++ + + + ++IR+ +D L AD R+ Sbjct: 61 DLAAADAGTLALHREPVRADDVVAQTVSAHRARAESSDIRLCTHTDPGL-VLDADPVRMR 119 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q+ + SNA+ + G TV L A +D + V++ GS I D VF RF Sbjct: 120 QVLGNLTSNALRHTPAGGTVTLTARQDGDLAVLIVEDTGSGIAADDLPHVFERFWRAEKS 179 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGLSIV F+ H G V++ S Sbjct: 180 RSRRTGGSGLGLSIVRQFVEAHEGTVTVDS 209 >gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1782 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 +++ V++T+ L E A + K F+ ++S+E+R+P+ IIG + L + Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDM 1128 Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712 + K I + + + + D RL Q+ +++NA+ F+ +G S +++ Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 D+ FSV+++G + E +F F R+ G GLGL+I + + L GG Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248 Query: 771 HVSISS 776 + + S Sbjct: 1249 KIGVES 1254 >gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 590 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 128/240 (53%), Gaps = 10/240 (4%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R +TE R+ ++ + ++ +S++LR+PL+ +IG + +LKT ++ + V Sbjct: 345 AFRDMTE----FRRLEQAREEYLSLISHDLRTPLSVVIGHSQILKTLLREKGLEREERNV 400 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I L +V ++LD A+++AG +KL + L L + + + + + + + Sbjct: 401 DAIIGGGRQLTRMVENLLDRASLEAGAVKLKLQRVDLESWLPDAIERVTVPANRSRVHL- 459 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 VI G + D R+ ++ +++NA+ +S+ + VI++A + + I SVK+ G I Sbjct: 460 VIERG--CTLDVDVDRIERVLGNLVTNALKYSAPETDVIVRAKVSSNNLIISVKDQGPGI 517 Query: 731 -PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 PED+ K +F ++ +RG+ G+GLGL I + HGGH+ + S +T + +P Sbjct: 518 KPEDVPK-LFQKYY-RTNRGRNEGLGLGLYISRLIVEAHGGHIWVESEPSKGSTFSFSLP 575 >gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM 12042] gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM 12042] Length = 748 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILLNLVND 626 K F+ +S+E+R+P+ I+G + + S LN + + +E I SS LL L+ND Sbjct: 355 KTDFLSRMSHEIRTPMNAILGMSAIAAQS----LNDPDRVGECIEKIQLSSRFLLGLIND 410 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685 ILD++ +++G + LN +V L+ V A + +R + + D L + + D Sbjct: 411 ILDMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCVVDPSLQTEYTGDSM 470 Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 +L Q+ ILSNA+ F+ G V+L +A ++N F +++ G I + +F Sbjct: 471 KLQQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDTGVGISPEFLPHLFE 530 Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F S G GLGL+I +S ++L G +S+ S Sbjct: 531 PFSQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRS 568 >gi|190891398|ref|YP_001977940.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696677|gb|ACE90762.1| putative two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 527 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 110/518 (21%), Positives = 212/518 (40%), Gaps = 51/518 (9%) Query: 305 LTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363 + H++E IL NL + + D + N +E+ + L DEL Sbjct: 13 MPHSFESILENLPQGVVLLDSANMVTAFNSRALEVLGLPEGALRKGMDIDEL-------- 64 Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423 P + + S + + + LP+G+ + + + G I +E+++ + Sbjct: 65 --PGTSDCRVAA---CSRSPTGKPQASQFALPDGRMISLTCAPSREGSWILSYEDISTLI 119 Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483 +E + ++ G+ +F ++ L N ++ ++ + GT + NI Sbjct: 120 RVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLILCNDSYARMYNLPDRLTQAGTPLANI 179 Query: 484 AATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A + N +D F + + + Q + L +++ + P+ N + T Sbjct: 180 LAYRAEQGNGPADTATYFDVVFEATALGAPASQ-NIALTDGRIVKITHNPMQNGGYVATH 238 Query: 543 VNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHVS 577 +VT +VR L ++ L R +E++ FV S Sbjct: 239 EDVTKTVRLAEELRRHHDQLEVTVRNRTAEVERQAREVERMLTQERNINELQRQFVAMAS 298 Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAG 636 +E R+PL I L K G++ + S E I AS + +++L+ IL +D G Sbjct: 299 HEFRTPLAIIDAAAQRL-LRKGGAVEPEFLSDKAEQIRASVSRIVDLMESILSAGRLDTG 357 Query: 637 IMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693 + ++Y L L+ +QS +K H I I DG L F+ AD + L Q+F+ Sbjct: 358 TIDISYGACALRSLIRSCCERQSTISKTHSFVIDI----DG-LPEFIDADPRTLAQVFTN 412 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753 +LSNA+ ++ S + + A + G+ S+ ++G I + +F R+ G Sbjct: 413 LLSNAVKYAPGTSEIRIAAWEETGNVRVSISDDGVGIDAEDVPLLFQRYFRARTSTGIAG 472 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 G+GL++V+ + LH G + + S+ +T +P K Sbjct: 473 TGIGLNLVKQIVELHQGSIEVQSARGCGSTFTVTLPIK 510 >gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 882 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+ Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661 Q + V+ I SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713 + + + D + + V D R+ QI + ++SNA+ F+ +G + L+ Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 532 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R G F +K++G I D ++F F R+ G GLGL+I +++ GG Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590 Query: 772 VSISSSDEGVTT 783 + +++S +GV T Sbjct: 591 L-VATSTKGVGT 601 >gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 662 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 551 AERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 A L + A R A E +K+ F+ +S+ELR+PLT I+G+++LL L +++ Sbjct: 255 AREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELL----LQRVDNTS 310 Query: 607 SQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662 Y + I+ S+ L++D+LDL+++ G ++L + L +L E Q + + Sbjct: 311 PLYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLCGVLGEAIGAQELVAEG 370 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ +++ L + D RL Q+F +LSNA+ F+ + + D ++ + Sbjct: 371 KALDVHLQLPDRPSL--VLGDATRLQQVFWNLLSNAIKFTPAEGRIDVALQADGNHWVIT 428 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I + +F+RF RR G+GLGL+IV+ + LHGG V+ +S G Sbjct: 429 VRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHG 488 Query: 781 -VTTINCRIP 789 T R+P Sbjct: 489 HGATFTVRLP 498 >gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134] gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134] Length = 855 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 10/256 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT S A+ + + A K++F+ +S+E+R+P+ +IG ++L + Sbjct: 202 TARDVTQSRIAQLEIERARQEAEAASRAKSAFLAMISHEIRTPMNGVIGMIEVLTRT--- 258 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L++ Q + V + S+ LLN+++DILD + ++A M++ + + + + S+ Sbjct: 259 TLSADQREMVATVRESAAALLNIIDDILDFSKIEADKMRIECVPLSIEHTVETLCASLVL 318 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDN 716 NN+ + + I G + D RL Q+ ++ NA+ FS G V L+ A Sbjct: 319 LAERNNVALYLDIDPGLPAQVLGDDLRLRQVLYNLVGNAIKFSGGALPGGRVYLRIAPAG 378 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 GD + F +++NG +P D ++F FV + G GLGL+I L GG ++ Sbjct: 379 GDVVRFEIEDNGIGMPPDAMATLFQPFVQAETTTTRRFGGTGLGLAICRRLTELMGGSIA 438 Query: 774 ISSSDEGVTTINCRIP 789 +S T +P Sbjct: 439 AASQPGAGATFTVCLP 454 >gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 882 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+ Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661 Q + V+ I SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713 + + + D + + V D R+ QI + ++SNA+ F+ +G + L+ Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 532 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R G F +K++G I D ++F F R+ G GLGL+I +++ GG Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590 Query: 772 VSISSSDEGVTT 783 + +++S +GV T Sbjct: 591 L-VATSTKGVGT 601 >gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 969 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KT++ + Q Y E I + Sbjct: 588 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 643 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L++ + L+ EV+ +A E +R + G Sbjct: 644 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 702 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 703 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 762 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + + R G GLGL+I + GGH+ + S Sbjct: 763 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 808 >gi|160872289|ref|ZP_02062421.1| sensory box histidine kinase/response regulator [Rickettsiella grylli] gi|159121088|gb|EDP46426.1| sensory box histidine kinase/response regulator [Rickettsiella grylli] Length = 369 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 20/256 (7%) Query: 531 IPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588 IPL PN Q ++ + ++ + A + +A+ K F+ +++++LR+PL II Sbjct: 101 IPLYEPNTQKVIGIIGISLDITASK----------QAELAKQQFMMNMAHDLRTPLAGII 150 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G + K Q QY +I + LL L+N ++D+ ++ LN+ I L+ Sbjct: 151 GIASIQANEK--KCLDDQQQYGRWIMEAGNQLLELLNAVMDVMALEEREDALNHDRIELS 208 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L+ E+ + + + + D KL +D +L +I ++SNA+ F+ KG+ Sbjct: 209 HLMKELTDLMQPSIVAKGLHSEWQFDPKLPVITSDYMKLKRILLNLISNAIKFTEKGTVG 268 Query: 709 I---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762 + L DN I +K+ G IP D + +F++F ++RG G G+GL +V+ Sbjct: 269 VAIHLLGMNDNHARIEIQIKDTGIGIPSDQHEKIFDQFYRAHPSYRGVYSGYGVGLYLVK 328 Query: 763 SFINLHGGHVSISSSD 778 ++L GG +++SS + Sbjct: 329 KAVDLLGGKITVSSEE 344 >gi|163846960|ref|YP_001635004.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524780|ref|YP_002569251.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668249|gb|ABY34615.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448659|gb|ACM52925.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 751 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 6/217 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D K +F+ +S+ELR+PLT I G DLL G L +Q +VE I + + NL++ Sbjct: 505 DRAKTNFIGTISHELRTPLTVIRGNADLLARGLAGPLEDEQKSFVEAIRLQANNMTNLIS 564 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 +++ +A +D+G +K I + + + ++ +R++V KL +AD Sbjct: 565 NVITIANLDSGSLKSTLEPIEVQRPIEDAIWQTQGQIKAKGLRLEVEIPKKLPKVLADFD 624 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--- 742 + I ++L NA ++S G T+ ++ V + G IP ++ + +F RF Sbjct: 625 HVRTIMLQLLDNARRYTSAG-TITVRVMPQPDTLRIEVSDTGRGIPPNLHQQIFERFFRG 683 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 S RG+GLGL+I + I GG + + S+ Sbjct: 684 DGTSEGINSSERGIGLGLAICKQLIERLGGTIGVESA 720 >gi|317063078|ref|ZP_07927563.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium ulcerans ATCC 49185] gi|313688754|gb|EFS25589.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium ulcerans ATCC 49185] Length = 451 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 33/349 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNES 494 ++ +S+G+ V + +I L N A L EE+ L + + R I + + N + Sbjct: 108 VESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIPNRKIYDSITEVKNNN 167 Query: 495 DGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 D I ++F SL +E + V SII N + + + D + Sbjct: 168 D-------IKSTFKQLEISLNSNVEKNIYCRVFINSIIG-KNKENLGIVTLLQDITK--- 216 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L++ D++K+ FV VS+E R+PLT++ +LL +G++N Q + ++ I Sbjct: 217 --------LKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQKELLKVI 268 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-- 671 + L L+ D+LDL+ +++G + + + ++ S+ N++I++ Sbjct: 269 KEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRNVKIEIRN 328 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSS 729 I D L AD ++L + + +L+NA+ + S + +I++A + + + SVK+NG Sbjct: 329 IKDSFL--VFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVKDNGKG 386 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ + +FN+F V ++ G+ G GLGLSI + I HGG + + S Sbjct: 387 IPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDS 435 >gi|260897182|ref|ZP_05905678.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus Peru-466] gi|308087996|gb|EFO37691.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus Peru-466] Length = 718 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A DF I V++ Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|225863841|ref|YP_002749219.1| sensory box histidine kinase [Bacillus cereus 03BB102] gi|225787888|gb|ACO28105.1| sensory box histidine kinase [Bacillus cereus 03BB102] Length = 355 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL S+ + + QY Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 170 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 231 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 289 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP + VF +F +RG++ G G+GL+I S LH G +++ S++ E V Sbjct: 290 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 345 Query: 783 TI 784 TI Sbjct: 346 TI 347 >gi|325105302|ref|YP_004274956.1| multi-sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] gi|324974150|gb|ADY53134.1| multi-sensor signal transduction histidine kinase [Pedobacter saltans DSM 12145] Length = 491 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 117/220 (53%), Gaps = 5/220 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E ++ ++ K+ F+ S+EL++PLT+I + LL+ S NS Y+ + + Sbjct: 257 EDQKQIEKKKDEFLSIASHELKTPLTSIKAYVQLLERSLKAEDNSPVGTYIHRVQSQLDK 316 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-- 677 L NL+ D+LD++ ++ G +KLN L+ L++ V +I K N++++++ +G+ Sbjct: 317 LQNLITDLLDISKIENGKLKLNKRPFCLSSLIDNVVNTI--KHTYGNVQLEILQEGERLD 374 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +AD R+ Q+ L+NA+ ++ +I+K + SV + G+ I E+ KS Sbjct: 375 REIIADENRVEQVLINYLTNALKYAPDSDKIIIKTEKMREFVKVSVTDFGTGISENNQKS 434 Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 +F++F + +G+G+GL I I H G V I+S Sbjct: 435 IFDKFYRVEETSVKFQGLGIGLYICSEIIRQHNGDVGINS 474 >gi|160938477|ref|ZP_02085832.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC BAA-613] gi|158438850|gb|EDP16607.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC BAA-613] Length = 517 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 +++++ ++ +S++LR+PLT+I G +L + +S+ I S L+NLV + Sbjct: 287 QLRSNLLRSISHDLRTPLTSISGNAGVLMSDGENLSAEHRSRIYRDIYDDSMWLINLVEN 346 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +L + ++ + L+ T +L ++++E + I + + IR+ + D L D + Sbjct: 347 LLSITRMEGQGVHLHMETELLEEVIDEAMRHINRRHEHHTIRVNQVGDYILADM--DARL 404 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++Q+ + ++ NA+ ++ +GST+++ + ++ + V +NG IP++ + +F F + Sbjct: 405 IIQVITNLVDNAVKYTPEGSTIMVNSRQEGASAVIDVSDNGPGIPDESKEKIFEMFYTTG 464 Query: 747 HRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 H+ +RG+GLGL + + ++ H G + + + + +P+KE Sbjct: 465 HKSADGKRGMGLGLPLCRAILSAHKGTIEVLDNKPAGSIFRLTLPAKE 512 >gi|154495975|ref|ZP_02034671.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC 29799] gi|150274858|gb|EDN01914.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC 29799] Length = 580 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 9/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A+ I++ F +VS+EL++PLT+I GFTD+L + + S ++ +++ I L+ Sbjct: 348 LKRAEGIRSEFTANVSHELKTPLTSIKGFTDMLSSGMVKSEEDRK-RFLTMIGVEVDRLI 406 Query: 622 NLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+NDIL ++ +++ I + ++ VL E + + E + + V + + Sbjct: 407 ELINDILRISELESVAIDQCEEASDVLT-AARETQTLLEPAAKEAGVTLNVTGQNAMAAI 465 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 RL ++ ++ N + ++ KG +V + + D+ V + G IPED K VF Sbjct: 466 PV--SRLKELLLNLMENGVKYNVKGGSVNVNVSADSAWVTTVVSDTGIGIPEDARKRVFE 523 Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +G+ R G GLGL+IV+ I L+GG V++ S+ +T ++P Sbjct: 524 RFF-RVDKGRARKNGGTGLGLAIVKHIIQLYGGTVTLESTLGQGSTFTVKLP 574 >gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 391 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 34/312 (10%) Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-----SI 530 PGT R + A C DG+ I+ D +L D + E+ + Sbjct: 90 PGTRERALTAGC-------DGF-----ILKPIDPR---------MLPDQIAEFLGGKREL 128 Query: 531 IPLPNAQTMLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 +P TML N R E R L+ +N L++ D +K++F+ +S+ELR+PLT I Sbjct: 129 LPKGMEMTMLREYNARLVERLEQQVRELSARNAELQELDRLKSTFLATLSHELRTPLTAI 188 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ +L + G L Q Q + I+ ++ IL ++N++L L V + ++ +V+ Sbjct: 189 LGYLELFERRAFGLLTDVQGQAIGVIARNARILSRILNNLLYLQEVRSN--EIRRVPVVI 246 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 +D++ E+ + H ++ + S ++ D + Q ++ NA+ F+ Sbjct: 247 HDVVREIIAEMQPLAHAAHLELTS-SIQPTAVYMGDPIGIGQALRALIDNAVKFTPAPGR 305 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + + + + V++ G IP + + +F F + + GVGLGL+I I Sbjct: 306 ISVTVIDEPSRVLVRVEDTGIGIPAEAHEKIFLPFYQIDDTLARPYAGVGLGLAIARHVI 365 Query: 766 NLHGGHVSISSS 777 HGG +S+ S+ Sbjct: 366 EAHGGQISVRSA 377 >gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] Length = 575 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 8/241 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ++ L EK A ++ FV +++ELR+PL ++G +L++ +++ Q + +E Sbjct: 197 DKTLKEKKRA-ESSERATRDFVAMINHELRTPLNGLLGSAELMEDTEI---TDYQKKLLE 252 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S +L ++ND+LD + + AG+++L + L+ ++Q +M E +R + Sbjct: 253 TIHQSGQMLRIIINDLLDFSKMSAGMLELKMANFKPCILVKTIEQIFTPQMAEKCLRFDI 312 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I+D + + D R+ QI ++ NA F+ G + LK + V + G I Sbjct: 313 HIADNLPQTLMGDIDRVQQILVNLIGNAFKFTKSGH-ISLKVGWQKNALVLIVSDTGCGI 371 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P+D K +F F V N+ + Q G GLGLSI + ++ G +S S + ++ Sbjct: 372 PQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKL 431 Query: 789 P 789 P Sbjct: 432 P 432 >gi|117924315|ref|YP_864932.1| histidine kinase [Magnetococcus sp. MC-1] gi|117608071|gb|ABK43526.1| histidine kinase [Magnetococcus sp. MC-1] Length = 295 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 13/248 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E N+ L ++E+K+ F+ H+ E+ +PL+ I+G + T ++ +S Sbjct: 30 RKLEEVNKKLASSEELKSHFIAHMKNEINNPLSTILGMAQAMSTGRIQDPEQLKSLSATI 89 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L N I A V+AG + T LND++ +V ++ + I++ + Sbjct: 90 FHDAYDLDFQLRN-IFAAAEVEAGDTLVETVTTDLNDVIRDVLENFDHLLRAKQIQLTLP 148 Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSI 730 S + FV D + I S +LSNA++F+ G ++L ++ D + ++ N+G++I Sbjct: 149 ESLSQPRPFVTDTTKFRLILSNLLSNAIEFNQPGGEIVLTLGSEDQDAPLLTLYNSGATI 208 Query: 731 PEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 PE +FNRF + HRG GLGLSI ++ ++L GG +++ + +G + Sbjct: 209 PEASLHDIFNRFTQLDTGTTKVHRGH----GLGLSICKALLDLLGGEITVKNQAQGGVEV 264 Query: 785 NCRIPSKE 792 + I S E Sbjct: 265 SIWISSLE 272 >gi|319900474|ref|YP_004160202.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415505|gb|ADV42616.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 725 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 20/238 (8%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L +KN L + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+ + + Sbjct: 472 RQLEKKNLELSVARDQAQSANRMKSIFIQNMSHEIRTPLNSIVGFSQLIANPDMELEPEE 531 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHE 664 Q +Y E I ++S +L LVND+L LA +++G Y T +++ NE+ QS+AT +H Sbjct: 532 QQEYSELIVSNSELLTTLVNDLLGLAELESG----KYVTKLVSQRCNELCSQSVATTIHR 587 Query: 665 NNIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720 +K+ + + D QR+ Q+ L+NA + +G + + + G Sbjct: 588 KPESVKLYYTSDVPDDYEILTDGQRVRQVLINFLTNAEKHTERGEIHLHCSLTEMPGCVT 647 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 FSV + G+ IP + + +F RF NA +G GLGLSI + G V + +S Sbjct: 648 FSVTDTGTGIPAEQAEHIFGRFEKLNAF---DQGFGLGLSICRLIADYLGAVVKLDTS 702 >gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 965 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 +++ + +K+ FV VS+ELR+PLT I G L+ LG + Q + A+S L Sbjct: 480 VKRIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGVVPEGMRQMLSIAQANSQRLS 539 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L+ND+LD+ ++AG M+ + L L E S + ++++++ D Sbjct: 540 HLINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLL-DCPPVRVR 598 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ + +SNA+ +S V+L+A R + V + GS I +F + Sbjct: 599 VDNMRLQQVLANFISNAVKYSPPAGEVLLRAERRDTRVRVEVSDQGSGIAAAFRDRIFAK 658 Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 F S A R G GLGL+I + I GG + S Sbjct: 659 F-SQADASDSREKGGTGLGLAISKELIERMGGQIGFDS 695 >gi|325288661|ref|YP_004264842.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964062|gb|ADY54841.1| integral membrane sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 410 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 17/241 (7%) Query: 559 NEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 N ALR KA E + FV S+ELR+PLT I+ +L + + ++ KQ ++VE A Sbjct: 175 NLALRPVEKAWEQQKRFVADASHELRTPLTVILANIGILLSHRKDTIE-KQYKWVENTQA 233 Query: 616 SSTILLNLVNDILDLATVDA-----GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 ++ + LV+D+L LA +DA +LN+S IV + LL + IA +E I + Sbjct: 234 EASRMKKLVDDLLFLAKLDAVQKPVQQTELNFSDIVWSSLLP--FEPIA---YEQGIEVS 288 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D + S D +L Q+ + +L NA ++ + V L D + SV N G I Sbjct: 289 SEIDPDI-SLNGDAGQLKQLVAILLDNACKYAGQNGKVTLTLKNDKDQALLSVNNTGEPI 347 Query: 731 PEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + VF RF +++ R +++ G GLGLSI ++ + HGG +S S+ + TT RI Sbjct: 348 PIEHLEHVFKRFYRADSSRIRKQGGYGLGLSIAQTIVESHGGGISAESNGQDGTTFIVRI 407 Query: 789 P 789 P Sbjct: 408 P 408 >gi|323436007|ref|ZP_01049656.2| two-component system sensor histidine kinase [Dokdonia donghaensis MED134] gi|321496322|gb|EAQ39628.2| two-component system sensor histidine kinase [Dokdonia donghaensis MED134] Length = 550 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 132/247 (53%), Gaps = 11/247 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++ + +N+ L + KN F V+++LRSPL+++I F D+LK + S + + Sbjct: 309 RKDKMIAAQNKRLSEVVATKNKFFSIVAHDLRSPLSSVINFLDVLKQEEFKS--KQTAAI 366 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENN 666 ++ + SS ++L++++L + ++ G +K Y I L D+L K I + + + Sbjct: 367 IDSLEDSSRNSISLLDNLLKWSKLETGQIK--YEPIPL-DILAITKDQIKVYSDNLKQKG 423 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I +++ S K G+ D+ + + +LSNA+ FS+ ++++ ++ DFIF++++N Sbjct: 424 INVRLESSFK-GTVEGDKNMIATVIRNLLSNAIKFSNDNDIIVIEFSKTAQDFIFTIEDN 482 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G + + K +F+ + +G R +G GLGL + FI H G +SI S + T + Sbjct: 483 GIGMTDAFRKKIFSLTETTVQKGTRNEKGSGLGLILSNEFIKTHNGDLSIESQEGKGTIV 542 Query: 785 NCRIPSK 791 +P K Sbjct: 543 TFTLPLK 549 >gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] Length = 918 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN+ Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNTTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL R + +++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|228986322|ref|ZP_04146459.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773349|gb|EEM21778.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 448 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + + + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDAIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ I S+ +NG + ++ +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447 >gi|217423415|ref|ZP_03454916.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] gi|217393273|gb|EEC33294.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] Length = 693 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 675 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 8/265 (3%) Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 II L NA +T T++ R + A + E +A +K+ F+ VS+ELR+PL + Sbjct: 257 IIGLTNAAIDITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 316 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +G+ LL ++ +E I S+ ++L++D+LD++ + +G + L + L Sbjct: 317 LGWAQLLAMRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 374 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 D+L +++I + I I + D RL Q+F +L+NA+ F+ +G Sbjct: 375 ADVLERARETIEPMARQKQIAIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 433 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 + + + +V++ G I VF+RF RR G+GLGL+I + + Sbjct: 434 IRVCVQASPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLV 493 Query: 766 NLHGGHVSISSSDEGV-TTINCRIP 789 LH G ++ +S+ + TT+ +P Sbjct: 494 ELHHGRITAASNGANLGTTMAVTLP 518 >gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 336 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 14/222 (6%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A K+ F+ ++S+E+R+P+ IIG L L+T L +Q +++E ++ S+ LL+ Sbjct: 2 EASRAKSEFLANMSHEIRTPIHGIIGMASLALETD----LTDEQREHLETVAQSADCLLH 57 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681 +VN ILDLA ++AG ++L + D + + + K ++ +R+ D + + + Sbjct: 58 IVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHLI 117 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCKS 737 D RL Q ++ NA+ F+ +GS K RDN +FSV++ G I ++ K Sbjct: 118 GDAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQKE 177 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 VF F S A R G GLGLSIVE + + GG + + S Sbjct: 178 VFKAF-SQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLES 218 >gi|119504270|ref|ZP_01626350.1| Sensory transduction histidine kinase [marine gamma proteobacterium HTCC2080] gi|119459778|gb|EAW40873.1| Sensory transduction histidine kinase [marine gamma proteobacterium HTCC2080] Length = 819 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ ++G +LL +KL +++Q + ++ IS S LL ++NDILD + Sbjct: 167 FLANMSHEIRTPMNGVVGMIELLNLTKL---DAEQHEMLQTISDSGQSLLTIINDILDFS 223 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690 +AG +++ L L Q++A +N+++I V + G + D R QI Sbjct: 224 KFEAGKLEIEEIETTLVTFLESTAQTLAPSALKNDVQIIVHAAAGTPDQLMLDPVRTGQI 283 Query: 691 FSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + SNA+ FS G V++KA R D SV + G I + K++F F Sbjct: 284 LINLASNAIKFSD-GGEVLVKAERIDPTHEDKTSLRLSVVDQGIGISAEAQKNLFQDFSQ 342 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 R+ G GLGL+I + + GG + + S +T C IP Sbjct: 343 ADSSTTRKYGGTGLGLAISKRLTEMMGGTIGVKSCPGEGSTFYCEIP 389 >gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1969 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 20/249 (8%) Query: 541 TFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 TFV++ D V AER AL E+ +A++ K+SF+ ++S+E+R+P+ IIG LLK Sbjct: 1198 TFVSMFDDVTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKR 1257 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +Q +E +S ++ LL ++NDILD + ++AG M L L ++++ V+ Sbjct: 1258 DA----TPQQVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRS 1313 Query: 657 SIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 ++ K + + I I+D L ++ D RL QI +NA+ F++ GS + L A + Sbjct: 1314 LLSEKAVDKGLEFITNIAD--LPQYLHGDGLRLGQILLNFAANAVKFTTNGS-ISLHAEQ 1370 Query: 715 --DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + D I F+V + G + E + +F F R+ G GLGL+I +L Sbjct: 1371 LGEESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDL 1430 Query: 768 HGGHVSISS 776 GG + + S Sbjct: 1431 MGGEIGVKS 1439 >gi|308050142|ref|YP_003913708.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632332|gb|ADN76634.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 928 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K +F+ +S+E+R+P+ I+G +L+ + L +Q Y++ I S LL+++ND+L Sbjct: 448 KTTFLATMSHEIRTPMNGILGTAELMADA---DLTPQQRHYLDVIHRSGEALLDVLNDVL 504 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687 D + ++AG + + +V+ L+ V ++A++ + + +++ G L +++ D +L Sbjct: 505 DYSKIEAGHLSVVEEPVVVEALVQSVLDTLASRAAQKGLSLRMAVRGTLAPAYLGDHAKL 564 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 Q+ ++ NA+ F+++G + +A D G +V++ G I + +SVF F + Sbjct: 565 RQVLLNLVGNAIKFTAQGEVRVALSA-DGGTLRLAVEDTGMGIELERQRSVFEPFQQSRS 623 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 Q G GLGL I GG +S++S+ + +P E Sbjct: 624 GEQWGGTGLGLPISRRLCEAMGGDLSLASTPGHGSVFTLTLPWPE 668 >gi|146313279|ref|YP_001178353.1| aerobic respiration control sensor protein ArcB [Enterobacter sp. 638] gi|145320155|gb|ABP62302.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 777 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L V D RL QI ++SNA+ F+ +G V+++ D GD + F V+++G Sbjct: 381 VLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQGE-VVVRIRFDQGDMLHFEVQDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V +++ G+ G G+GL++ GG +++SS +G T Sbjct: 440 IGIPQDEHDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKSMGGDITVSSQQGKGSTF 499 Query: 783 TINCRIPS 790 T+ P+ Sbjct: 500 TLTVHAPA 507 >gi|89094752|ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92] gi|89081006|gb|EAR60243.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92] Length = 881 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 17/249 (6%) Query: 555 LTEKNEALRKADEIKNS-------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 L ++N+AL KA + NS F+ +S+ELR+PLT++ GF LL ++ L + Q Sbjct: 263 LEKQNQALDKARKRANSANLAKDEFLARMSHELRTPLTSVSGFARLLDQTE---LKTDQK 319 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +Y I+ +S +LL++++DILD + +++ ++L + + +V + H+ + Sbjct: 320 EYTRIINLTSGLLLSIIDDILDYSKLESNAIELEEIPFDFENCILDVLEMQTAAAHDKGL 379 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722 + + + + F V D RL QI + ++SN++ F+S+G I K + Sbjct: 380 ELVPVIESETPKFLVGDPVRLRQILTNLISNSVKFTSQGHVCIHVVPTKISPVESKLKII 439 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G+ IP+D ++F F R+ G GLGL I + L G +S+ S + Sbjct: 440 VEDTGTGIPQDSIDNLFQAFSQADTSITRKYGGSGLGLVIAKRLTELMSGEISLESKEGK 499 Query: 781 VTTINCRIP 789 T I IP Sbjct: 500 GTQITLNIP 508 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 10/227 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + E KA++ K+ F+ ++S+E+R+P+ IIG DLLK ++L N+ Q +Y++ Sbjct: 283 QELEKAKEEADKANKAKSEFLANISHEIRTPMNGIIGIIDLLKVTEL---NNNQKEYLDM 339 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S SS +LL ++N ILD++ +++G +L + L+ + + ++ + N+ + Sbjct: 340 LSNSSRLLLGILNTILDISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYY 399 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727 D + + D RL Q+ I++NA+ F+ G + L + FSVK+ G Sbjct: 400 IDPYINFDLIGDEIRLNQVLINIINNAIKFTEMGQIMFKVRKLNTTNNKLTLEFSVKDTG 459 Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772 I E+ +F +F+ + + G GLGL+I + L G + Sbjct: 460 IGIKEEFKNDIFKKFIQQDMTYTKKYDGTGLGLAISKDIAKLMNGDI 506 >gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1135 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L KN AL++ D++KN F+ + S+EL++PL IIG + L G L+ S + Sbjct: 418 QKLETKNAALQEMDQLKNEFLANTSHELKTPLNGIIGIAESLIDGATGELSQPTSSNLSL 477 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S L LVND+LD + + + L + + ++ V + ++ N ++++I Sbjct: 478 IVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGMREITEVVL--LLSRPLVGNKKLQLI 535 Query: 673 SD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + + AD RL QI ++ NA+ F+ +G T+ + A N +V + G I Sbjct: 536 NQVSSSIPPVDADENRLQQILYNLVGNAIKFTERG-TIKVSAEVVNYYLKITVSDTGIGI 594 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 P D +F F R+ GVGLGL++ + + LHGG + + S+ Sbjct: 595 PPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKLVQLHGGDIDVEST 643 >gi|329935640|ref|ZP_08285447.1| two component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329304901|gb|EGG48772.1| two component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 580 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606 R AL +K + +E FV +S+ELR+PLT I T++L+ ++ GS++ Sbjct: 312 RTAEALEKKVADMSSREEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMI 371 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 V + + + L +LV +++++ DAG +L + DL +++ I + + Sbjct: 372 EPAVRLVVSETRRLNDLVENLMEVTRFDAGTARLVLDHV---DLADQITACIDARAWLDA 428 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + + D + G D +RL I + ++ NA+ GS V + D D + V++ Sbjct: 429 VEL----DAERGLMANLDPRRLDVILANLIGNALKHG--GSPVRVAVRTDGEDLLIQVRD 482 Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +G IPE++ VF+RF ++A R + G GLGLSI ++HGG ++ ++S EG Sbjct: 483 HGPGIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGGITAANSPEGGAVF 542 Query: 785 NCRIP 789 R+P Sbjct: 543 TLRLP 547 >gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 847 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 11/221 (4%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL ++G +L + K + S LL ++NDILD +T+DA Sbjct: 468 MSHEIRTPLNGVLGMLQILGNE---ITDPKPLRLTRTALDSGRKLLAIINDILDFSTIDA 524 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694 G L+++ + + + +N V + + ++ + + + + D + V D R+ QI + Sbjct: 525 GAAPLDHAPLRIRETVNSVLANFSEEVRQKGLTLTAVVDRAVPDVLVGDESRIRQILFNL 584 Query: 695 LSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747 + NA+ F+ +GS ++ A + + +V++ G + +M +F+ F V + Sbjct: 585 VGNAVKFTREGSVRVDVLLLTAPADEEARLLVTVEDTGIGMEAEMLPRIFDPFFQVDGTY 644 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 R + +G GLGL IV S +++ G++S+ S+ TTI C + Sbjct: 645 RRRYQGTGLGLGIVRSLVSMMNGNISVESTPGVGTTICCSL 685 >gi|83950180|ref|ZP_00958913.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens ISM] gi|83838079|gb|EAP77375.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens ISM] Length = 472 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L ++E ++A K+ F+ VS+ELR+PLT+I G DL+ LG + K + Sbjct: 214 LQTEHEKTKEASAAKSEFLATVSHELRTPLTSIKGSLDLIAARALGEIPPKMEPILTIAQ 273 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK---MHENNIRIKV 671 +ST L L+ND+LDL ++AG +++Y LN ++QSIAT ++ ++ Sbjct: 274 RNSTRLNALINDLLDLQKMEAG--RMDYFMEELNA-AEFLEQSIATNEPFAQRFDVTFEL 330 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 D RL Q+ S ILSNA FS GSTV +++ SV + G +P Sbjct: 331 EPTPANLFITCDASRLDQVLSNILSNAAKFSETGSTVSIRSDVVGAMLRVSVIDRGVGLP 390 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ + VF+ F +R+ G GLG++I + + H G + ++ TT +P Sbjct: 391 ENVKQKVFDEFSQLDSSDKRKVGGTGLGMNISKRIMEAHDGRIDYVKNEGPGTTFFIELP 450 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 38/274 (13%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ V+A + L + E +A K+ F+ ++S+E+R+P+ +IG T LL + L+ Sbjct: 376 DVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDT---DLD 432 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+Q Y + +S+ LL ++NDILD + ++AG + + L +L + +A K Sbjct: 433 SEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAE 492 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------------ 710 E + + D + S V D RL QI ++ NA+ F+ G I Sbjct: 493 EKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRSE 552 Query: 711 -------------KAARDN-GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751 +D GD F +++ G IP+D S+F F R Sbjct: 553 VSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTTR 612 Query: 752 R--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782 + G GLGL+I + GG + S D+G T Sbjct: 613 KFGGTGLGLAISRQLAEMMGGTAGLESVEDQGST 646 >gi|253573668|ref|ZP_04851011.1| sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251847196|gb|EES75201.1| sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 363 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 126/260 (48%), Gaps = 7/260 (2%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+ N + TD R L E R+A++ KN + +VS++LR+PLT+I G+ Sbjct: 104 IPVQNVGQLGQLA--TDINRMIDRLVTSIEDERRAEQTKNELITNVSHDLRTPLTSITGY 161 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 L++ + + YV S L L+ D+ + + MKL + I L ++ Sbjct: 162 LGLIEEDRYRD-EVELRYYVSMAYEESLRLKQLLQDLFEYTRMQNKEMKLEFRRINLAEM 220 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 L+++ ++ EN + ++ G L AD +L +++ +++NA+ + G + + Sbjct: 221 LHQMAAHFGWQLQENGMECRLYLHGPL-YVQADGDKLRRVYENLMTNAIRYGHDGKYLDI 279 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768 + ++ + I V N G IP +F+RF V + Q G G+GL+I + ++LH Sbjct: 280 RGWQEGDEIITEVVNYGDPIPTVDLPHLFDRFYRVEKSRASQTGGSGIGLAIAKHIVDLH 339 Query: 769 GGHVSISSSDEGVTTINCRI 788 G +S + S+E T R+ Sbjct: 340 HGTIS-ADSNEYRTAFTVRL 358 >gi|94312913|ref|YP_586122.1| signal transduction histidine protein kinase [Cupriavidus metallidurans CH34] gi|93356765|gb|ABF10853.1| signal transduction histidine protein kinase [Cupriavidus metallidurans CH34] Length = 1156 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 15/262 (5%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 F + D V A++ L +K + ++A E +++F +S+E+R+PL ++G +LL S Sbjct: 506 FCAIQD-VTAQQQLEQKLRSAQQATEAMMRARSNFFAAMSHEIRTPLNALLGNLELLGRS 564 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 L + ++ + + +SS L +VNDILD + +DAG MKL + D L + S Sbjct: 565 --AGLEAHATR-LRALQSSSEGLRRIVNDILDFSKIDAGEMKLVSAPFNPLDELESLSLS 621 Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712 A + + IR L + + DR RL QI + +L NA F++ G S I + Sbjct: 622 YAPMVTDRPIRFYAHLSPTLSTLLRGDRMRLAQIVNNLLGNAFKFTASGKISLSAEISRD 681 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770 A+ + V++ G + + + VF FV + Q G GLGLSI L GG Sbjct: 682 AQGLATLVCRVRDTGDGMSQALASRVFQPFVQGETSTTAQYSGTGLGLSICARLSELMGG 741 Query: 771 HVSISSSDEGVTTINCRIPSKE 792 H+S+ S + + IP E Sbjct: 742 HISVESVEGVGSAFTVVIPFAE 763 >gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329] Length = 878 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+ Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 411 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661 Q + V+ I SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 412 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 468 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713 + + + D + + V D R+ QI + ++SNA+ F+ +G + L+ Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 528 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 R G F +K++G I D ++F F R+ G GLGL+I +++ GG Sbjct: 529 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 586 Query: 772 VSISSSDEGVTT 783 + +++S +GV T Sbjct: 587 L-VATSTKGVGT 597 >gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 717 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 16/214 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ IIGFTD+L + L+ +Q ++ + I S++ LL+L+NDIL Sbjct: 198 KSEFLAAMSHEIRTPMNGIIGFTDMLLDT---GLDEEQQEFAQTIKRSASALLSLINDIL 254 Query: 629 DLATVDAGIMKLNY----STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 D + V+AG + L I D+ + V+ +A++ E R I D + + D Sbjct: 255 DFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASRPIEVLCR---IDDTLPANVMGDP 311 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740 R Q+ ++ N+ F+ KG + A D + + +++ G IPE+ +S+F Sbjct: 312 GRYRQVLVNLMGNSAKFTKKGELELAIAVDDETEETITLHARIRDTGIGIPEEKLESIFE 371 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 F R G GLGLSI L GHV Sbjct: 372 AFRQADGSTTREYGGTGLGLSICRKIAALMHGHV 405 >gi|300214818|gb|ADJ79234.1| Sensor protein [Lactobacillus salivarius CECT 5713] Length = 307 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E NE +++ +E + F ++E+R+PLT I G + L + + ++S +E Sbjct: 64 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 121 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVN+ LD + +G ++L+ + + +LN + + + K + + ++ Sbjct: 122 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 181 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + KL + AD RL+QI I NA+ F+ G + + A + N + I + +NG + E Sbjct: 182 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 239 Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + ++++ R+ + + + G GLGLSIV + LH G V++ S + TT R P Sbjct: 240 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 299 Query: 790 SK 791 +K Sbjct: 300 NK 301 >gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1115 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 133/262 (50%), Gaps = 12/262 (4%) Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 D + S P+ + ++T+ + + L E A+ K+ F+ ++S+E+R+ Sbjct: 572 DVSVAVSYAPIAGGRLFCFVKDITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRT 631 Query: 583 PLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 P+ +IGF++L L N Q +++ I SS LL ++NDILD + +++ M L Sbjct: 632 PMNAVIGFSEL----ALDDPNPVSQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLE 687 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700 + L++LL +V++ + E + + V + + + + D RL QI + +L NA+ Sbjct: 688 MEVLNLDELLGQVRRMFVMQAKERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIK 747 Query: 701 FSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 F+++G+ + ++A + N + + F VK++G + S+F FV + RR G Sbjct: 748 FTNQGAVSLNVRAIQTNSENVTLDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGT 807 Query: 755 GLGLSIVESFINLHGGHVSISS 776 GLGL+I + L G + + S Sbjct: 808 GLGLTISRNLARLMDGDIRVDS 829 >gi|255280824|ref|ZP_05345379.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469] gi|255268761|gb|EET61966.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469] Length = 895 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 135/245 (55%), Gaps = 8/245 (3%) Query: 553 RALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQY 609 R EK EA + K ++++ + ++ +S++LR+PLT+I G ++LL + +++ + Sbjct: 649 RNAREKEEAAIIAKNEQLRANLLRTISHDLRTPLTSISGNASNLLSNYRKLDDGARERIF 708 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I S L+NLV ++L + ++ G ++L+ S ++++++ E + + K + IR+ Sbjct: 709 TD-IYEDSMWLINLVENLLAVTRLEDGQVRLHQSVELMDEVVAEALRHTSRKSKSHTIRV 767 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + L D + ++Q+ + NA+ ++ +GS + + + +G + SV +NG Sbjct: 768 SSAQELILAKI--DARLVVQVLINLTDNAIKYTQEGSCIEIHTEQKDGWVVVSVSDNGPG 825 Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP++ VF+ F S A++ RR +GLGLS+ S +N HGG +++S + T Sbjct: 826 IPDEQKMHVFDMFYSGANKLADSRRSLGLGLSLCRSIVNAHGGTITVSDNHPEGTVFTFT 885 Query: 788 IPSKE 792 +P+ E Sbjct: 886 LPAGE 890 >gi|167646752|ref|YP_001684415.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167349182|gb|ABZ71917.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 592 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 13/230 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K +F+ +S+E+R+PL ++G +++ L L Q + +E + S L ++ND+L Sbjct: 207 KTTFLATMSHEIRTPLNGVLGMLQVMQADGLSDL---QRERLEIVRKSGEGLTAILNDVL 263 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQR 686 DL+ ++AG +++ L LL +++ E + + V S+ + G + D R Sbjct: 264 DLSKIEAGRLEIQTVAFDLPGLLVGCHHAVSVLAAEKGLSCTLTVASEAR-GLYHGDPLR 322 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVS 744 L Q+ +LSNA+ F++ G+ I +AR NGD + +V + G + PED+ + +F +F Sbjct: 323 LRQVIGNLLSNAVKFTNSGT--IDLSARLNGDALEIAVSDTGVGVAPEDLGR-LFGKFSQ 379 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RR G GLGL+I L GG +S++S+ +T R+P+ Sbjct: 380 LDASSTRRHGGTGLGLAICRDLCGLMGGGISVTSTVGQGSTFTVRLPAAR 429 >gi|239625972|ref|ZP_04669003.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239520202|gb|EEQ60068.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 363 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 VR + + L + +++ F+ + S+E ++P+ ++ GF LLK L + + Sbjct: 111 VRLSESFNSMAQELENTELLRSDFINNFSHEFKTPIVSLRGFAKLLKNPDLS--QEDRDE 168 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHEN 665 Y++ I ST L L +++L+L+ ++ M + S + DL EV+QSI +K + Sbjct: 169 YLDIIIHESTRLSQLASNVLNLSKIEN--MSI-LSDMERFDLTEEVRQSILLLESKWQKK 225 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +++I D S+ R L Q++ ++ NA+ FS + +K + +G+ IF + + Sbjct: 226 --ELELIIDMDEVSYHGSRNLLNQVWINLIDNAVKFSPDRGKIKIKLHQQDGNTIFQIID 283 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 NG + +DM +F+RF G G+GL++V+ + LH GH+++ S + TT Sbjct: 284 NGCGMSQDMRLHIFDRFYQGDPSHTTEGNGIGLTVVDKIVRLHKGHITVGSEEGIGTTFT 343 Query: 786 CRIP 789 +P Sbjct: 344 VTLP 347 >gi|16125173|ref|NP_419737.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221233906|ref|YP_002516342.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|13422191|gb|AAK22905.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220963078|gb|ACL94434.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 586 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 10/235 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E+ E +A K++F+ S+ELR+P+ ++G L+ S +L+ Q + + Sbjct: 193 RGLREEREKALEAARAKSTFIAVTSHELRTPMNGLLGMAHALQRS---TLDPVQREQIAL 249 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L+ L+ND+LDL+ V+ G ++L + L DL+ EV + N+ + V Sbjct: 250 MIKSGDSLMQLLNDVLDLSRVETGKVELAPIDMSLQDLVGEVVDAWRDAAVFKNLSLSVD 309 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD--FIFSVKNNG 727 L V AD R+ Q+ + ++SNA+ F+ G + AAR + GD +V + G Sbjct: 310 YAPDLPPGVHADPLRIRQVVTNLVSNAIKFTVDGGVRLEVAARPANGGDQRVSITVADTG 369 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 +P D + VF+ F R G GLGLSI + GG + + S G Sbjct: 370 PGVPADAMERVFDSFTQADQTISREHGGAGLGLSIARALARQMGGDLVLVPSGRG 424 >gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] Length = 933 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 19/251 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610 + L EA + A+E K+SF+ +S+++R+P+ IIG + + + +N+ Q + Sbjct: 535 KVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNAIIGMSSIAASQ----INNPQKVKDCL 590 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I+ SS LL L+N+ILD++ ++ G + L L++++ ++ + T+ E N + Sbjct: 591 EKINLSSKHLLALINEILDMSKIEKGKIALAEEPFCLSEVIEDISAMVRTEAAEKNHELT 650 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSV 723 V I D + + D R+ Q+ ++SNA+ ++ G ++L G F+F+V Sbjct: 651 VIIKDIEHNILIGDAGRIRQVLLNLISNAIKYTLNGGEILLTVQEVSGKISGYGSFVFTV 710 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS---- 777 ++NG + ED +F F + + +G GLG+SI + + G++ + S Sbjct: 711 EDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGLGMSISQKIVAAMQGNIQVESEKGKG 770 Query: 778 DEGVTTINCRI 788 V T+N +I Sbjct: 771 SRFVVTLNLKI 781 >gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1174 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 130/244 (53%), Gaps = 22/244 (9%) Query: 551 AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 AER L E +ALRKA + K+ F+ +S+ELR+PL I+GF+ ++ + SL Sbjct: 675 AERKLAE--QALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGFSQVM--VRDSSLK 730 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ Q+++ I+ + LL+L+NDIL+++ ++AG +LN ++ L LL +++ K Sbjct: 731 NEHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIRLLGTLEEIFRLKAE 790 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---- 717 +++ ++ FV D +L Q+ ++ NA+ F+ GS T+ +K +N Sbjct: 791 SKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTETGSVTLRVKLKSENEISSL 850 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773 F +++ G I + +F F GQ+ +G GLGL I F+ + GG +S Sbjct: 851 ALPLQFEIEDTGPGIAAEEMNKLFAPF-EQTKTGQKSQQGTGLGLPISRKFVQMMGGDIS 909 Query: 774 ISSS 777 ++S+ Sbjct: 910 VTST 913 >gi|253579599|ref|ZP_04856868.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849100|gb|EES77061.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 470 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L ++ L K E + F+ +VS++ RSPLT+I G+ + + + Q +Y++ Sbjct: 231 KTLNYMSDELNKNGEYQRKFIANVSHDFRSPLTSIKGYVNAILDGTIPY--EMQERYLKI 288 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S L L +L L +D ++ +ND + + IR++++ Sbjct: 289 IAFESERLEKLTRSLLTLNELDMKKRMMHIQRFDINDTIKNTAATFEGICTSRQIRLELL 348 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G AD +++ Q+ +L NA+ FS+ S+V ++ +G SVK+ G+ IP+ Sbjct: 349 LSGHELYVRADMEQIQQVLYNLLDNAIKFSNDNSSVQIETTVKSGKVFVSVKDYGTGIPK 408 Query: 733 DMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + +++RF +A RG+ R+G GLGLSIV+ IN H ++ + S+ EGV T Sbjct: 409 ESLGKIWDRFYKIDASRGKDRKGTGLGLSIVKEIINAHNQNIDVIST-EGVGT 460 >gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8] gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima] Length = 412 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RK DE++ F+ VS+ELR+PLT+I G+ + L L + ++++ I S + Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLEDDLEN-KELVKRFLKIIEEESARMTR 238 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+LDL ++ + L +++ V + I EN + + V + + Sbjct: 239 LINDLLDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECEDVVVR--G 296 Query: 683 DRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSV 738 +++RL+Q+ ++ NA+ ++S KG + A D D+ + V++ G IP++ + Sbjct: 297 NKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRI 356 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F +F V A + G GLGL+IV++ ++ HGG + + S T + +P + Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPKR 411 >gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 624 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 163/353 (46%), Gaps = 45/353 (12%) Query: 443 LSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 LSE + V+ PD R + +L K EN+ + I CS W Sbjct: 306 LSEIIGVYNHIHPDDRHDMLRFLDNAL-KGTENKFNKEIRILRQDGNCS--------WTH 356 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 I+ + E Q +EL+ + Y I L + + ML Sbjct: 357 VNLIVKVYAPE----QNCIELI---CINYDITRLKDTEAMLILAK--------------- 394 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E ++D +K++F+ ++S+E+R+PL IIGF+ LL + ++ +Y+ I+ ++ + Sbjct: 395 EKAEESDRLKSAFLANMSHEIRTPLNAIIGFSGLLPYIEDAE---ERDRYIALINHNNEL 451 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LLN++ND+LDL+ ++AG ++L+ + L+DL++E + E + +K Sbjct: 452 LLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQRNVPEG-VTLKTRYPAIPRL 510 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D R+ Q+ S ++SNA+ +++G V + + SV + G IP++ +F Sbjct: 511 IEQDPMRIKQVLSNLVSNALKNTTQG-YVEISYETGQSEARISVSDTGCGIPQEKLGVIF 569 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT---TINCRI 788 RF Q G GLGLSI +S + G + IS+ EG T T C++ Sbjct: 570 ERFEKTDSFVQ--GAGLGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFPCQV 620 >gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 1328 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 12/244 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T+ + E L + + K F+ ++S+E+R+P+ I+G L ++L Sbjct: 580 LLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 637 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q +Y+ I+ S+ LL ++NDILD + ++AG + + L+++ + I+ K Sbjct: 638 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 696 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDN 716 E I + D ++ V D RL Q+ + NA+ F+ KG ++ + D+ Sbjct: 697 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 756 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 FSVK+ G I ++ +FN F S A R G GLGLSI + + L GG +S Sbjct: 757 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 815 Query: 774 ISSS 777 +SS+ Sbjct: 816 VSSA 819 >gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 970 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 19/238 (7%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 AER L E A++ K+ F+ +S+E+R+P+ ++GF +LL +L +++ Sbjct: 358 AERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRL---DAESHD 414 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V I S +LLNL+ DILD + ++A +++ S L +L ++ + T+ + Sbjct: 415 LVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLE 474 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI 720 +++ ++ + D +RL Q+ K+L+NA+ F+ +G I ++ R Sbjct: 475 LEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESEDMREVR----LR 530 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FSV+++G I ++F+ F RR G GLGL+I + ++ GG + ++S Sbjct: 531 FSVRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGGRLQVTS 588 >gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] Length = 916 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 125/228 (54%), Gaps = 14/228 (6%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N+ +++ +K F+ ++S+E+R+PL I+G+T LL+ KL +++Q Y+ I S+ Sbjct: 279 NKETSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKDKL---DNQQRLYINTIEQSTN 335 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIR-IKVISDG 675 LL ++ DILD + ++AG + L S + + +L+++V Q ++ + H+ + I +++ Sbjct: 336 NLLAIIGDILDFSKIEAGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEVANE 395 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGD--FIFSVKNNGSSI 730 + D R+ QI + ++ NA+ F+ G + V L+ R NG + V + G I Sbjct: 396 VPEWLIGDAIRIRQILTNLIGNAIKFTHDGFVRTKVTLEQQR-NGQPRLLVQVIDTGIGI 454 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 PE+ S+F F V+ + Q G GLGL I + + GG + ++S Sbjct: 455 PENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQMGGEIEVNS 502 >gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1001 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 22/242 (9%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ +S+E+R+P+ ++G T+LL + +L+S+Q ++ + + S LL ++ Sbjct: 335 ASQAKSQFMATMSHEIRTPMNGVLGMTELLLGT---ALDSRQRRFAQAVYRSGESLLEII 391 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + ++AG ++L + L+ +V + +A + E + + + L + D Sbjct: 392 NDILDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGD 451 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFI---FSVKNNGSSIP 731 RL Q+ + +++NA+ F+ G V+ + A GD + V++ G IP Sbjct: 452 ALRLRQVLTNLVANAIKFTEHGEVVVEMRRVEPTAAETALATGDRLWVELCVRDTGIGIP 511 Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-R 787 + +F F S A G R G GLGL+I + L G +++ S GV + C R Sbjct: 512 PEALSRLFIAF-SQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQ-PGVGSRFCVR 569 Query: 788 IP 789 +P Sbjct: 570 LP 571 >gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 938 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L + E +A K+ F+ H+S+E+R+PL ++G T+L +++ +L + ++ Sbjct: 543 EHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESA---TLEERTRHFLH 599 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S LL L+NDILDL+ ++AG +++ L + + +S++ + + ++ Sbjct: 600 LARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVLAEQKGLLLEC 659 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGD--FIFSV 723 D + + + D RL QI ++ NA+ F+ +G ++L A GD +FSV Sbjct: 660 RLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRAVGQGDIRLLFSV 719 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G I + +++F F + ++ G GLGLSI + + GG + + S +T Sbjct: 720 SDTGIGIDKATFRTIFENFTRLDNSAEQVGTGLGLSICRRLVEMMGGRIWLESEVGVGST 779 Query: 784 INCRIP 789 + +P Sbjct: 780 FHVSLP 785 >gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 950 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 97/436 (22%), Positives = 186/436 (42%), Gaps = 66/436 (15%) Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443 +S+ DT H + H+ ++ P T+ +++ +V+LE + L +V E+ + Sbjct: 103 ASDDESDTGHSTVIEWQHLRISGIPSVATLMTLRDVSREVELEKDRDRLAEVAEESPYPI 162 Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL---- 499 E G + +NPA +A R+ G+DL Sbjct: 163 VE----IDRHGNLVYANPA--------------------MADVLGRF-----GYDLAGKP 193 Query: 500 ------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAE 552 A++ + E ++L + ++ +++ P+P + F +++++ Sbjct: 194 EILPDNLPALVATCLLEGRTLTSQDVVRGEACYSWTLCPVPGHGLVRAFAIDLSEVHATH 253 Query: 553 RALTEKNEALRKADEI--------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 RAL E + LR+++ K+SF+ +++ELR+P+ +IG LL + Sbjct: 254 RALNETADRLRESNRQLDQALQQAQTAARAKSSFLAMITHELRTPMNGVIGMASLLLETP 313 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q + I L+L+ND+L+ + ++AG ++L + L + +V Sbjct: 314 ---LTEEQRSFTNTIQQCGEAQLSLINDVLECSKIEAGKLELEHLDFYLRTTVEDVLSQF 370 Query: 659 ATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD 715 A + + I ++ + D RL Q+ + + NA+ F+ +G V L+A RD Sbjct: 371 AERAQRKGLEITGLVHAAVPNALRGDPGRLRQVLTNFVGNAIKFTERGE-VTLQAFLERD 429 Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 + + F V ++G I ED+ +F F R+ G GLGL+I + + L GG Sbjct: 430 SPSEVIIKFEVTDSGIGISEDVQSRLFQAFTQADSSTTRKYGGTGLGLAISKQLVELMGG 489 Query: 771 HVSISSSDEGVTTINC 786 V + S TT C Sbjct: 490 QVGLRSQPGQGTTFWC 505 >gi|294634067|ref|ZP_06712622.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292829881|gb|EFF88235.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1168 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A + K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 876 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 935 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M + + L+ L+ V+ + + + Sbjct: 936 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLSRLIEYVEATFRPMTTQKGLEF 995 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNG 717 V + G D RL QI +LSNA+ F+ +G V R Sbjct: 996 AVETATGAPADLFTDDSRLRQILRNLLSNAVKFTEQGRVELSIEPAADEEVPAGVVRGGA 1055 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G IP+ +S+F F R+ G GLGLSI +L GG V + Sbjct: 1056 VVAFRVKDTGIGIPQQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVVVD 1115 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1116 SAPGRGSTFTLFLP 1129 >gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] Length = 615 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E +A+ IK F+ +S+E+R+P+ I+G ++L L+ K ++ E Sbjct: 225 ELLLQEAQHESEEANRIKTEFIATMSHEIRTPMNVILGSLEVLNEE---DLSPKSKRFAE 281 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +++ +LLN +ND+LD A +++G + L+ L+ ++ + + ++ V Sbjct: 282 ISQSAAHLLLNQLNDVLDFARLESGKVALSQGEFSPYKLVRSIEDIFRNQAEQKGVKFHV 341 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I V+D ++ QI + I+ NA+ F+S GS I + IF++ + G I Sbjct: 342 DIGFSPELFMVSDEGKISQILTNIVGNALKFTSSGSITIRARWHETEQLIFTISDTGIGI 401 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +D S+ FV + RR G G+GL+I + + L G + I S T R+ Sbjct: 402 DKDKIASILQPFVQSDASFSRRYGGAGMGLAITSALVELLCGQLEIDSQVAKGTQFTVRL 461 Query: 789 P 789 P Sbjct: 462 P 462 >gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1044 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 +++F+ ++S+E+R+P+ IIGFT+ L+ + +L Q++Y++ + ++ +L L+NDIL Sbjct: 655 RSTFLANMSHEIRTPMNAIIGFTEALRET---ALQPTQARYLDTVHYAARSMLRLLNDIL 711 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687 D A +D G ++L + +L ++ S+ + +++ D + D R+ Sbjct: 712 DTAKLDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMRV 771 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI +L NA+ F+ +G V+L+ + G V + G I + +F+ F Sbjct: 772 QQILVNLLGNAVKFTERGH-VLLRVRYEQGVLQLDVHDTGIGIAPEKIHRIFDPFAQADA 830 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLG +I L GG + + S+ T R+P Sbjct: 831 STTRRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLP 874 >gi|32476376|ref|NP_869370.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446921|emb|CAD78827.1| sensory transduction histidine kinase-possibly sensor/response regulator hybrid [Rhodopirellula baltica SH 1] Length = 860 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 19/237 (8%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 IKN F+ ++S+E+R+P+ I+G +L+ S SL+ +Q Y+ I S+ LL ++NDI Sbjct: 320 IKNQFLANMSHEIRTPMHGILGTAELMTRS---SLDEQQRHYMYMIQTSAKGLLTVLNDI 376 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQR 686 LD + VD+G M L L DLL++ ++ K E +++ + G V D R Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAVVNLKNEEVDLQFQP-PVGVPEIIVGDPTR 435 Query: 687 LLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVKNNGSSIPEDM 734 L Q+ ++ NA+ F+ +G + L + G I F++ + G + + Sbjct: 436 LRQVLINLVGNALKFTEQGRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQQ 495 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F F RR G GLGLSI + L GG + +SS ++ IP Sbjct: 496 QAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIP 552 >gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis] gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis] Length = 930 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 52/287 (18%) Query: 543 VNVTDSVRAERALTEKNE--ALRKADEIKNSFVQHV--------------SYELRSPLTN 586 ++VTD VR + + E A++KA E + + H+ S+E+RSPL+ Sbjct: 327 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSG 386 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++ ++L T+ +L+ +Q Q + + +S ++L L+NDILDL+ V++G+MKL + Sbjct: 387 VVSMAEILSTT---NLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFR 443 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 +++ V Q+ A + + I ++D + D R+ QI + ++SNA+ F+ +G Sbjct: 444 PREVVKHVLQTAAASLKKFLILEGCVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGK 503 Query: 707 TVI----------------------LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNR 741 I + A+ ++ V + G IPE+ ++F + Sbjct: 504 VGINLYVVADPCFGKADGNHQKSSAKEEAQSQETLVWLRCDVYDTGIGIPENALPTLFKK 563 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + VS H + G GLGL+I + + L GG +++SS +NC Sbjct: 564 YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSR------VNC 604 >gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 589 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 17/232 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE-- 611 AL + A+ K F+ +S+ELR+PLT+I GF +L++ +Q ++ + Sbjct: 350 ALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEK------RIEQPKFKDQA 403 Query: 612 -YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ L L+ ILD A ++AG M++ + + + L+ A E + ++ Sbjct: 404 GMIRRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELR 463 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 V I+D + + D RL Q+ + +LSNAM F++ G V ++ RD V + G Sbjct: 464 VQIADDVPETLLTDELRLKQVLNNLLSNAMKFTA-GGHVAIEVERDATQLRLHVVDTGPG 522 Query: 730 IPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP + + +F RF AH Q G GLGL++ S L GG + ++S+ Sbjct: 523 IPAEQHELIFERFRQADSQVAH--QHGGTGLGLALSRSLAELMGGTLGVTST 572 >gi|170727177|ref|YP_001761203.1| histidine kinase [Shewanella woodyi ATCC 51908] gi|169812524|gb|ACA87108.1| histidine kinase [Shewanella woodyi ATCC 51908] Length = 576 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 8/244 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V ++ L +K A + K+ FV +++ELR+PL ++G T+L+ ++L Q + Sbjct: 197 VLLDKTLAQKTRAEQSERSTKD-FVAMINHELRTPLNGLLGNTELMIETRLSDY---QEK 252 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ + S +L ++ND+LD++ ++AG+++LN +L N ++ + A + E + Sbjct: 253 LIKNMVQSGELLKVIINDLLDISKINAGMLELNEVAFSTLELTNAIQNTFAPQAAEKGLA 312 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 D K + D R+ QIF ++ NA+ F+ KG + +K F F + + G Sbjct: 313 FDFEIDPKTPENLSGDPDRIKQIFVNLIGNAIKFTDKGK-ISIKIDWHESSFRFVISDTG 371 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 IP++ ++F+ F +R R G GLGL+I + +N G +++ S + ++ Sbjct: 372 CGIPKEHLANLFDPFTQVNNRSNRLYEGTGLGLTICKLLVNEMLGQIALESQPDKGSSFT 431 Query: 786 CRIP 789 +P Sbjct: 432 VTLP 435 >gi|269960268|ref|ZP_06174643.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi 1DA3] gi|269835075|gb|EEZ89159.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi 1DA3] Length = 786 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTDEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A D I V++ Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDYATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IP++ +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 43/290 (14%) Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573 ++ S+ P+ PN N+ V ER +T+K E A KAD + K++F+ Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELENKLIKAADKADVSNKAKSTFL 415 Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633 +S+ELR+PL I+G +++++ + +Q + ++ + S LL+L+NDILD + + Sbjct: 416 ATMSHELRTPLNGILGMAQIIESN---IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472 Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMH--------ENNIRIKVISDGKLGSFVADRQ 685 + ++LN+++ ND+++ + + + +NNI K I F+ D+ Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIIDNNINEKTI-------FIGDKP 525 Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 R+ QI ++SNA+ F+ KGS + A+ V++ G I + K +F Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEP 585 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ R+ G GLGL+IV+ + G++S++SS+ T +P Sbjct: 586 FIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635 >gi|187923308|ref|YP_001894950.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gi|187714502|gb|ACD15726.1| osmosensitive K+ channel signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 944 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 112/214 (52%), Gaps = 9/214 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +++ ++NS + +S++LR+PLT I+GF+ +L + N + VE I + + + Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQAPDAQPNG---ELVEAIHEEALRMTGI 732 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD+A + AG ++LN +L + + ++ + + +R+K+ +D L D Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLTNHPVRVKLPADLPLLHL--D 790 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSVF 739 + ++FS + NA +++ + + + A R + D F+ +V ++G +P M VF Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDSGPGLPAGMEARVF 850 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +F + G+GLGL+I + + HGG + Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 884 >gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 588 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E +RK +++++ FV +VS+EL++PLT+I GF + LK+ + +K ++++ I Sbjct: 348 ALMEDVSEIRKLEKMRSEFVANVSHELKTPLTSISGFIETLKSGAIEDEETKM-RFLDII 406 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L L+NDIL L+ ++ L I N+ L +V + + +IR+ Sbjct: 407 DIETERLARLINDILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQV 466 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + L + ++ Q+F ++ NA+ ++S+G V + A + +FSVK+ G IP+ Sbjct: 467 ELNLPILIGNQDWFKQMFINLIDNALKYTSEGGRVQISAYKKYNHVVFSVKDCGVGIPKK 526 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F RF V A + G GLGL+IV+ + G + ++S Sbjct: 527 DIPRLFERFYRVDKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNS 571 >gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 523 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 9/222 (4%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTI 619 A + +E +N+F+ +S+ELR+P++ I GF + + G +Q + ++ IS + Sbjct: 285 AQKMEEERQNTFISVISHELRTPVSIIKGFAETMLRPD-GQFTVEQYREALQVISEEADR 343 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678 L + D+LD++ + AG ++L S + L+ L+++V + A ++ E I+V D L Sbjct: 344 LARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDD--LP 401 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKS 737 AD +R+ Q+ + ++ NA+ +S G VI AR GD I V + G IP + Sbjct: 402 PVYADYERMRQVLTNLIENAVKYSPNGG-VIRIGARAEGDMAIVYVSDQGIGIPPEEQDL 460 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F RF V R + G GLGL I + + HGG + + S Sbjct: 461 IFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQ 502 >gi|325917266|ref|ZP_08179488.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536520|gb|EGD08294.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 459 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 12/222 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616 K E +A K F+ + +E+R+P+T ++G ++LL KTS+ ++ Q Y E I + Sbjct: 243 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSQ----DATQRSYTESIRRA 298 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G Sbjct: 299 GAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 357 Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733 LG A D R+ QI +LSNA+ F+ +G + L F V + G I D Sbjct: 358 LGDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLTTLGTYQGLRFEVADTGPGINAD 417 Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +F RF + + R G GLGL+I + GGH+ Sbjct: 418 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELALAMGGHI 459 >gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] Length = 807 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + A+ K+ F+ ++S+E+R+P+ +I+G + LL TS +L+ Q ++ I Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSDDQRNHLITI 513 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL+L+NDILD++ +DAG + + L L+ +V K ++ +++ + Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSS 729 D L + D R+ QI +SNA+ F+ +G I + +F SV++NG Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + D VF F R+ G GLGL+I + +L GG V + S Sbjct: 634 LSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVES 682 >gi|188581323|ref|YP_001924768.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179344821|gb|ACB80233.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 613 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 16/292 (5%) Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572 L G L + D+V+ Y + N V T + +RA R L + LR+A+ +K Sbjct: 319 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 378 Query: 573 VQHVSYELRSPLTNIIGFTDLL-------KTSKLGSLNSKQSQ--YVEYISASSTILLNL 623 + ++++L++PL+ I+G +++L + + GS +++ + V++I S+T L+++ Sbjct: 379 LGTIAHDLKNPLSVILGRSEMLTDLIGLDQGAAPGSDDARAAMRTQVDHIRTSATRLIDM 438 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ++ ++ A DA + L + L L EV ++ R+ G L D Sbjct: 439 IDSLMADAMNDALDITLRREPVDLAGLAREVCEANRPLAESKGQRLITDLAGPL-QLCGD 497 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742 +RL + ++SNA+ +S G T+ ++ + GD++ +V + G + PED + +F R+ Sbjct: 498 AERLREALDNLVSNAIKYSYPGGTITVRVRAEAGDYVCAVADQGPGLSPEDAGR-LFGRY 556 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791 +S G GLGLSIV+ LHGG SS G + + R P + Sbjct: 557 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEASSDGPGQGAVFSMRFPKE 608 >gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 645 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P++ ++G T+LL ++L +Q +Y+ I AS+ LL+++NDIL Sbjct: 264 KSQFLSNMSHEIRTPMSGVLGMTELLGFTEL---TPEQHEYLNDIKASADNLLSIINDIL 320 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ ++AG ++L + L + ++ E +++I+ ++ V D+ R+ Sbjct: 321 DLSKIEAGKIELEAANFSLQQCIRTTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRV 380 Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 QI +LSNA+ F++ G I L +R+ + SV + G I + +F+ F Sbjct: 381 KQILLNLLSNAVKFTAHGQISIQASLLESRNEHLLVQISVSDTGVGIAAEALDRIFDPFT 440 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 R+ G GLGL+I L GG + + S + + + R+P K Sbjct: 441 QADASTSRKFGGTGLGLAICRQLAELMGGGIRVESEEGKGSRFHLRLPFK 490 >gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1788 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ A+ K+SF+ ++S+E+R+P+ I+G L + ++ K Y+ +I Sbjct: 924 LAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQRM---TVEPKLRDYLGHIQ 980 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL ++NDILD++ ++AG + L++L++ V + K + N+ + + + Sbjct: 981 VAADTLLGIINDILDVSKIEAGKLHFEDIPFKLDELISRVMRLQGLKAQDKNVELVIDLE 1040 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSS 729 ++ + V D R+ QI + +++NA+ F+ +G V+ L+ D F V+++G Sbjct: 1041 PQVPQTVVGDPLRISQILTNLVNNAVKFTEQGEVVLSVKLQGVFDGRVTLYFEVRDSGIG 1100 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + + + +F F RR G GLGLSI ++ + + GGH+ + S Sbjct: 1101 MEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMGGHLQVES 1149 >gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 778 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 778 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 778 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|58293963|gb|AAW69924.1| ethylene receptor [Malus x domestica] Length = 741 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 36/265 (13%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ +T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNLIK 431 Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + + ++ + + +D + + + D +RL+QI ++ NA+ FS +GS I + Sbjct: 432 PVASVKKLSVALNIATDLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490 Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 + RD DF VK++G I P+D+ ++F +F + G G Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGLGINPQDI-PNLFTKFAQTQTSASQNSGGSG 549 Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780 LGL+I + F+NL GH+ I S G Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574 >gi|30020625|ref|NP_832256.1| sensor protein vanS [Bacillus cereus ATCC 14579] gi|29896177|gb|AAP09457.1| Sensor protein vanS [Bacillus cereus ATCC 14579] gi|326940267|gb|AEA16163.1| sensor protein vanS [Bacillus thuringiensis serovar chinensis CT-43] Length = 385 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ ++ E NI + + +A Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384 >gi|317130193|ref|YP_004096475.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475141|gb|ADU31744.1| integral membrane sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 468 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 4/228 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L D+++ FV +VS++LRSPLT+I GF L + + S+Y + + Sbjct: 235 EELGSIDQMRKDFVANVSHDLRSPLTSIRGFLGALIDGTIPK--EEHSKYFSIMKNETER 292 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L+NLV D+L +A ++A + + +T L + L + + + + + +++ + + Sbjct: 293 LMNLVEDLLHMARLEANQIDIKPNTYNLTEQLRLIIAKMEPSLSKRRVELELHCEEDVFV 352 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + AD R+ Q+F +L NA+ FS + S + + +++ S+ + G I E+ K ++ Sbjct: 353 Y-ADENRMDQVFINLLQNALQFSHEDSKIEVNIEKESDVAKVSITDYGPGINEEDLKYIW 411 Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 RF + R ++ G G+GLSIV+ I+LHG + + S + TT C Sbjct: 412 ERFYKKDKARSKKTGAGIGLSIVKHIIDLHGTTIDVKSDVKEGTTFIC 459 >gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 556 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 11/219 (5%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+P+ +IG DLL ++L S Q +Y + I S+ L+ ++NDILD Sbjct: 172 FLAMMSHEIRTPMNGVIGMIDLLMETEL---QSDQQEYADIIRRSADALVAVINDILDFT 228 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690 +++G M++ L + EV +++ N+ + D ++ + D RL Q+ Sbjct: 229 KLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRLRQV 288 Query: 691 FSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746 ++SNA+ F+ +G + + + DNG + FSVK+ G I + +F F Sbjct: 289 LINLVSNAVKFTDQGGVYVFASVKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFSQLD 348 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSIS-SSDEGVT 782 R+ G GLGL+I ++ +N+ GG + + S ++GVT Sbjct: 349 SSMTRKYGGTGLGLAICKTLVNMMGGDIRVDMSGEQGVT 387 >gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] Length = 1053 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 15/232 (6%) Query: 557 EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612 E N+A KA+E +K+ F+ ++S+E+R+P+ IIG + L LKT L KQ Y+ Sbjct: 286 ELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----LTPKQHDYILK 341 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S+++LL ++NDILD + ++AG + + + L+D+L+ V K E + + Sbjct: 342 IHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSMVTGQKAFEKGLELIFQ 401 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727 D + + D RL QI +++NA+ F+ +G + + + + F+V++ G Sbjct: 402 IDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQGEITVHVTKKPYSEEKIELNFTVQDTG 461 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 + + + +F+ F RR G GLGLSI + L GG + + S+ Sbjct: 462 IGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGDIHVESA 513 >gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] Length = 891 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 257 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPPQTDYLQTIQRSANNLL 312 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 313 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQV 372 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A + + + + + G I E Sbjct: 373 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTGIGISESQQT 432 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I E + GG +S S Sbjct: 433 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYS 474 >gi|307154954|ref|YP_003890338.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985182|gb|ADN17063.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 373 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 9/238 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AERA+ + ++ E+K+ F V++E R+P+T I+G LL+ ++ +Y+ Sbjct: 125 AERAIRVALQKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHHQISEERRREYL 184 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHENN 666 I S + L+ND+L + V+ G +K + + L DL++E++ + N Sbjct: 185 FLIQQSVRSMEQLLNDVLSIGRVEGGSLKFQPAILNLEQFCRDLIDEMQFNAGP-----N 239 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +I G D++ L I +L+NA+ +S +G + L D+ + V++N Sbjct: 240 YQIIFQQHGDCEHTYLDKKLLRHILVNLLTNAIKYSPEGGHIYLNIFCDHTEIKLQVQDN 299 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IPE+ +F F + G G GLGL++V+ ++LHGG + ++S TTI Sbjct: 300 GIGIPEENQHHLFEPFQRAGNVGSIPGTGLGLTMVKKCLDLHGGEIVVNSQVGVGTTI 357 >gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 778 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|218781238|ref|YP_002432556.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762622|gb|ACL05088.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 622 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 9/245 (3%) Query: 552 ERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 ER T + A L+++++ F S++L+ PL + +T LL G L+ K + Sbjct: 372 EREATRRRAAMADLKRSNKELEQFAYVASHDLQEPLRMVASYTQLLAQRYEGQLDEKAQK 431 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y+ Y +T + +LVND+L L+ V G + N+++ +V + + + E Sbjct: 432 YISYAVEGATRMQHLVNDLLQLSRV--GTRGAPFEPTDCNEVVQQVLKGLKRTIAETKAG 489 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727 + VI D L AD +L Q+F +L NA+ F + V + A + N ++F V++NG Sbjct: 490 V-VIDD--LPVVQADAIQLGQVFQNLLGNAVKFRGEAPPQVRITAEKQNEAWVFQVRDNG 546 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + +F F RG+ G G+GL+I + + HGG + I S + + Sbjct: 547 IGIDPKFHERIFTIFQRLHERGKYNGTGIGLAIAKKIVERHGGRIWIESQEGKGASFFFS 606 Query: 788 IPSKE 792 IP ++ Sbjct: 607 IPERD 611 >gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1216 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL + SL+ Q Y E I + Sbjct: 835 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 891 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + L+ EV+ +A E +R + G L Sbjct: 892 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 950 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 951 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 1010 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGH+ + S Sbjct: 1011 KARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVIS 1055 >gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 805 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K +F+ +S+E+R+P+ ++G LLKT LN +Q ++++ + S ++ L+N+I Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 408 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LD + ++ G M+ + + + ++ V T E ++ KV S G + AD+ R Sbjct: 409 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYSTVPTGRWYCADKAR 468 Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 L Q+ +L+NA+ F+++G + + R+ +++ VK+ G IPE K +F F Sbjct: 469 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGIGIPESAQKRIFRPFE 528 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV+ GG V++SS Sbjct: 529 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 563 >gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 1297 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 11/248 (4%) Query: 541 TFVNVTDSVR--AER-ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 T +N+T+ R AER L + +A R +A+ IK+ F+ +S+ELRSPL I+G+ L Sbjct: 893 TVLNITEQKRIEAEREQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRL 952 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ KL +Q++ ++ I ++ + L+ D+LD++ + G + L + I L +++ Sbjct: 953 LQNGKLDL--PRQTEALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISA 1010 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 +++ NI+I + + D RL Q+ +L+NA+ F+ +G VI++ Sbjct: 1011 AIETVRLAAEAKNIQILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELK 1070 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 + + V + G I VF F R+ G+GLGL+IV + +HGG Sbjct: 1071 QLDQLAQIRVSDTGKGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGT 1130 Query: 772 VSISSSDE 779 V S E Sbjct: 1131 VKAESLGE 1138 >gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 766 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 38/352 (10%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 T + + G+A P GR L N F + E L G R I + Sbjct: 175 TFEQAAVGLAHCSPQGRFLLVNDRFCEIAGYEREELI-GLDYRQITHPADYEIDARLAGR 233 Query: 499 LFAAIITSFDDERKSLQG---------TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549 L I F E++ ++ T+ L+ D+ E FV V + + Sbjct: 234 LLLGEINDFAYEKRYVRKDGGLVWINLTVSLVRDASGEPDF-----------FVCVVEDI 282 Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQ 608 A R+ + A K F+ ++S+E+R+P+ I+GF DLL LG+ L Q + Sbjct: 283 GARRSAEMASAA-------KTGFLANMSHEIRTPMNGILGFADLL----LGAGLPPDQHR 331 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V+ I+ S ++ L+NDILDL+ V+AG M++ L L+ + + I Sbjct: 332 QVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGID 391 Query: 669 -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNN 726 I+ I+D + D RL Q+ +L NA+ F+S+G V L+ D D + V+++ Sbjct: 392 LIRDIADDLPRTVTGDGLRLRQVVLNLLGNAVKFTSEGH-VALRVHLDGADRLVIVVEDS 450 Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 G I + ++F +FV ++A R G GLGLSI + L G +++ S Sbjct: 451 GPGIAPERQAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDS 502 >gi|258511936|ref|YP_003185370.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478662|gb|ACV58981.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 463 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 9/241 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A RAL +R++ E + FV H S+ELR+PL + D + G S+ + Sbjct: 205 ASRAL----RPIRRSFEEQRRFVAHASHELRTPLAVMRLQIDRMFRHP-GETILDMSEVI 259 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 ++ ++ L LVND+L LA D G L + L + E A E ++++ Sbjct: 260 ASLARETSRLQRLVNDLLTLAKADEGEAVLRLRPVDLATIAREAALRFAPLAEEKGVQLR 319 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V VAD RLL++ S ++ NA+ F+ G V + A + +V++ G I Sbjct: 320 V--SAAETPIVADPDRLLELLSILVDNAIAFTPAGGWVEIDAHASGSAAVLAVRDTGRGI 377 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV-TTINCRI 788 P + VF+RF RG GLGLSI + HGG + I S G T + R+ Sbjct: 378 PPEHLPRVFDRFYQADPSRTTRGAGLGLSIAKWIAEAHGGQIRIFSPGSHGTGTEVEVRL 437 Query: 789 P 789 P Sbjct: 438 P 438 >gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 16/241 (6%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASST 618 A+R+ + I++ FV +VS+EL++P+ + GF + L G+L K+ +++ I S Sbjct: 343 AVRRLERIRSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQIIYDESD 399 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ DIL+L+ +++ + L +S + + ++ Q + + + +I ++ + +L Sbjct: 400 RLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENEL- 458 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD---FIFSVKNNGSSI 730 AD RL QI +LSN + ++ +G V + + DN D + + G I Sbjct: 459 YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGI 518 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE +F RF V A G GLGLSIV+ LH G +S+ S TT N + Sbjct: 519 PEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIEL 578 Query: 789 P 789 P Sbjct: 579 P 579 >gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1302 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 5/217 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D +KN FV VS+ELR+PLT+I G L++ + ++ + A+ L+ Sbjct: 921 KEMDRLKNEFVATVSHELRTPLTSIRGSLGLIQGVMAKDVPPAATRLLTIAVANCERLVA 980 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+NDILDL + AG+M + N +++ ++ + + + GK +++ Sbjct: 981 LINDILDLEKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGKGEAWIP 1040 Query: 683 -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R Q+ + +LSNA FS +G + + +G SV ++G+ IP + +F+R Sbjct: 1041 VDPARFQQVLANLLSNAAKFSPQGGIIDVAIEPIDGAIRISVTDHGTGIPAEFQSRIFDR 1100 Query: 742 FV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 F S+A R ++ G GLGL I I GG + + Sbjct: 1101 FTQADSSATR-EKGGTGLGLHITRQIIETMGGTIDFA 1136 >gi|11499078|ref|NP_070312.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM 4304] gi|2649082|gb|AAB89763.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM 4304] Length = 908 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 13/242 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +++TD AE L + E LRKA+E ++V +S++LR+PL N+ G+ L Sbjct: 661 AMIDITDRKMAEEKLKQTLEELRKANEELEAYVHAISHDLRAPLRNLQGYVSALVEDYGE 720 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQS 657 L Y+ + A + + L+ND+L+ A V A + +++ + IV D+L+ +K Sbjct: 721 KLEEDARFYLSRLKALTEKMDGLINDLLEYARVSKAKAEVRRVDLNLIV-EDVLDYLKDE 779 Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARD- 715 I K VI KL + DR+ L + ++SNA+ F +G +K A D Sbjct: 780 IRGKS-------AVIEIEKLPAVKGDRKLLFTVMLNLISNAIKFVEEGVRPEVKVWAEDV 832 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 NG VK+NG IPE+ + +FN F G G+GL+IV+ + + GG + Sbjct: 833 NGKVRVYVKDNGIGIPEEYHEKIFNIFERLHGEEVYPGTGVGLAIVKKAMEVMGGRYGVR 892 Query: 776 SS 777 S Sbjct: 893 SK 894 >gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden] Length = 477 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L E E + + K+ F+ +VS+ELR+PL +IIGF++++K+ LG + NS +Y+ I Sbjct: 228 LKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDI 287 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672 +S LL+L+NDILD + +A + + + L +++ + + + + + KV+ Sbjct: 288 HSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVL 347 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730 K+ VAD +R+ Q+ +LSN++ F+ + TV +++ ++ I + + G I Sbjct: 348 PSDKV-VMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406 Query: 731 P-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 +D+ K SVF + V + H + G GLGL + + + L G I S T I Sbjct: 407 AQQDLYKVMSVFGQ-VDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLT 465 Query: 788 IPSKE 792 P E Sbjct: 466 FPYTE 470 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 9/216 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ + +ELR+PL IIG+T +L+ K+G K Q +E I ++ + L++D+L Sbjct: 1065 KDEFLAILGHELRTPLNPIIGWTQMLRRGKVGP--DKHDQALEIIERNARLQTQLIDDLL 1122 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQR 686 D++ + G +++ I L ++ +++ + +++ ++ + L AD R Sbjct: 1123 DVSRIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAPLS---ADPTR 1179 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L Q+ +L+NA+ F+ G V ++ G ++ + G IP + +F RF Sbjct: 1180 LQQVVWNLLTNAVKFTPAGGQVQVRLESGGGMARLTISDTGVGIPAEFLPHLFERFRQAD 1239 Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780 + R +G+GLGL IV + HGG V S EG Sbjct: 1240 TKSTREQKGLGLGLFIVRHIVEAHGGTVQAESEGEG 1275 Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 7/245 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQS 607 RA A + EAL + D K F +VS+E R+PL+ ++G D+L + + +Q Sbjct: 353 ARAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLEDVLAGDGISAPTREQL 412 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + + LL LVN +LD + ++AG ++ N+ L L ++ + + + + Sbjct: 413 TLAQR---NGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGL 469 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 R+ + + DR +I +LSNA F+ +G + ++ + G+ +++ G Sbjct: 470 RLVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLRGQ-IAVRLRQQTGEVCLELEDTG 528 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I +F+RF V+ G G+GL++V + +HGG VS+ S +T Sbjct: 529 VGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFT 588 Query: 786 CRIPS 790 R+P+ Sbjct: 589 VRLPT 593 >gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 633 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 18/245 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +AE LT+ EA A+ K F+ +S+ELR+PL IIGF+ LL SL + Sbjct: 144 QAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDP--SL-APHRPT 200 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S LL L+NDIL+++ ++AG LN I + LL+ ++ + E + + Sbjct: 201 LDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLL 260 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR-DNGD----- 718 KV ++ ++ D +L Q+ +L+NA+ F+++G + L A + D G Sbjct: 261 KVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIW 320 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 F V + G I +F F + G + +G GLGL I + F+ L GG + + S Sbjct: 321 LHFLVSDTGPGIAAHEMDELFVPF-AQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRS 379 Query: 777 S-DEG 780 D+G Sbjct: 380 KVDQG 384 >gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 968 Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E AL E A + K+ F+ +S+E+R+P+ I+G T+LL+ +Q +++ Sbjct: 579 ELALRVAKERAEAASQAKSEFLAMMSHEIRTPMNAILGITELLQEQ---PSKKEQLEFLT 635 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + + LL L+NDIL+L+ ++AG +L + L +LL V + + + + Sbjct: 636 VQAKAGQALLTLINDILELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHL 695 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I++G +++ D +RL Q+ ++ N + F+++GS I NG VK++G+ I Sbjct: 696 EIAEGLSPNWIGDERRLRQVLINLVGNGIKFTNRGSIWISAQPMANG-LEIRVKDSGAGI 754 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F RF V + + G GLGL+I + ++L GG + + S + + + Sbjct: 755 NPRHHDKIFERFHQVDSTATRKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLAL 814 Query: 789 PSKE 792 P E Sbjct: 815 PLSE 818 >gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 595 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 ++K ++++ FV +VS+EL++PLT+I GF D LK G++N + ++++ I + Sbjct: 367 IKKLEQMRTEFVSNVSHELKTPLTSIRGFIDTLKD---GAVNDPEVAGKFLDIIDIEAER 423 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 L L+N+IL L+ +++ N + L +++EV + E + + I++ Sbjct: 424 LSRLINEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESV-- 481 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S A++ ++ Q+ ++ NA+ ++ + +V +KA + G + SV++ G I ++ + Sbjct: 482 SIQANKDKIKQLLINLIDNAIKYNIENGSVTVKAEQAGGKVLISVRDTGIGIEKEYLDRI 541 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F RF V + G GLGLSIV+ +NL+ G + + S T IP Sbjct: 542 FERFYRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594 >gi|294678584|ref|YP_003579199.1| cache sensor protein [Rhodobacter capsulatus SB 1003] gi|294477404|gb|ADE86792.1| cache sensor protein [Rhodobacter capsulatus SB 1003] Length = 699 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 3/241 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + A+ K +F+ +S+ELR+PL IIG+ DLL+ S+ L + + I+ Sbjct: 458 LVRMGDKIDAANRAKAAFLSAMSHELRTPLNAIIGYADLLEGSEGERLEGARLDQLRAIT 517 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 A+ L+ LV+ +LDL+ ++ + L + + L LL E S + ++ I + + Sbjct: 518 AAGWDLVRLVDVVLDLSRIEGQDLALAHEPLALRPLLEEALDSQRAEAGKHGITLDLDFP 577 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732 +G L D + L +I ++LSNA+ ++ G V L+ A + F+ + + G I Sbjct: 578 EGPLPPLRGDAKILRRILDELLSNAVKYNLPGGRVTLQVAPETAGFLPLRIIDTGVGIGA 637 Query: 733 DMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + SVF F H G G+GL+I + F ++ G + S T R+P + Sbjct: 638 EHRDSVFKAFHRLGHENSTISGAGIGLAIAKRFADVSGCQLDFDSVAGAGCTFTLRLPCR 697 Query: 792 E 792 Sbjct: 698 P 698 >gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] Length = 828 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 134/250 (53%), Gaps = 18/250 (7%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+S Sbjct: 305 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 361 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TK 661 Q + V+ I +SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 362 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMVLFQSK 418 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARD 715 + + + +++ + D R+ Q+ + ++SNA+ F+ G + + ++ Sbjct: 419 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKE 478 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G +F V++ G I +D ++F F R+ G GLGL+I +++ GG + Sbjct: 479 CGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQL- 537 Query: 774 ISSSDEGVTT 783 I++S +GV T Sbjct: 538 IATSTKGVGT 547 >gi|229079728|ref|ZP_04212261.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228703568|gb|EEL56021.1| Sensor histidine kinase [Bacillus cereus Rock4-2] Length = 363 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 133 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 191 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 192 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFHIQFQEANIECRPSFPSQKLMVLA 251 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 252 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 311 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 312 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 362 >gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23] gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23] gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99] Length = 459 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620 L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ +S +T L Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTVLSEETTRL 288 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L +L LA++D + L ++ Q E + I + D ++ Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNY 346 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D + L Q++S +L+NA+ F+ +G + + + + V+++G I + +F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYEEGTNVFVEVQDSGVGISKSDMAKIFE 406 Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 25/275 (9%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 S DD+ QG LEL++ V + V A A ++ EAL + Sbjct: 309 SLDDD---YQGFLELVAGQV-----------------ATIIADVGAYEAAKQRAEALAEI 348 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D K F +VS+E R+PLT ++ + L L+ Q +E +S LL LVN Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRLEIAQRNSLRLLKLVN 408 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 +LD + ++AG + Y + L E+ S + M + + +++ LG S D+ Sbjct: 409 TLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTL-IVNCPPLGESVYVDQ 467 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 + +I +LSNA ++ GS + D+ SV + G IPE +F RF Sbjct: 468 EMWEKIVLNLLSNAFKYTLAGSITVKVQGFDD-HIELSVIDTGIGIPEADLPHLFERFHR 526 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V A G G+GLS+V+ + LHGG + ++SS Sbjct: 527 VKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSS 561 >gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 1173 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 6/222 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R + E K+ F+ ++S+E+R+PL IIG+ + L L S E + S Sbjct: 556 ELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLTEREKHTS--AETVVRSGRH 613 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL+L+NDILD + +DA + ++ ++ L +LL+E++ A + E + +I + L Sbjct: 614 LLDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHIICEYPLPE 673 Query: 680 FVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 ++ D R QI + NA+ F+ KGS + ++ R + V + G + + Sbjct: 674 KISTDPTRFRQIIINLCGNALKFTEKGSISLNVRCDRQRQALVARVVDTGIGMKPEQLGR 733 Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +F+ F S A Q G GLGLSI L GG++S++S+ Sbjct: 734 LFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTST 775 >gi|118477337|ref|YP_894488.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118416562|gb|ABK84981.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 375 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL S+ + + QY Sbjct: 132 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 190 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ S + + L+ ++ ++ + ++ Sbjct: 191 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 250 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + D +L D ++++F ++SN++ + G ++++ ++ + + +KN G Sbjct: 251 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 309 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 IP + VF +F +RG++ G G+GL+I S LH G +++ S++ E V Sbjct: 310 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 365 Query: 783 TI 784 TI Sbjct: 366 TI 367 >gi|145357869|ref|NP_196633.2| AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase [Arabidopsis thaliana] gi|122227002|sp|Q3S4A7|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis histidine kinase 5; Short=AtHK5; AltName: Full=Protein AUTHENTIC HIS-KINASE 5; AltName: Full=Protein CYTOKININ-INDEPENDENT 2 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana] gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana] Length = 922 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 46/292 (15%) Query: 543 VNVTDSV--RAERALTEKNEALRKADEIKNSFVQHV--------------SYELRSPLTN 586 + VTD V R + A ++ A+RKA E + + H+ S+E+RSPL+ Sbjct: 325 MEVTDQVVKREKMAKLREDNAVRKAMESELNKTIHITEETMRAKQMLATMSHEIRSPLSG 384 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++G ++L T+KL + +Q Q + + +S ++L L+NDILDL+ V++G+M+L + Sbjct: 385 VVGMAEILSTTKL---DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMRLEATKFR 441 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 +++ V Q+ A + ++ I+D V D R+ QI + ++SNA+ F+ +G+ Sbjct: 442 PREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHEGN 501 Query: 707 T-----VILKAA--RDNGD------------------FIFSVKNNGSSIPEDMCKSVFNR 741 VI + + RDN V + G IPE+ +F + Sbjct: 502 VGIKLQVISEPSFVRDNALNADTEEHEQNGLTETSVWICCDVWDTGIGIPENALPCLFKK 561 Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 ++ S H + G GLGL+I + + L GG ++++S +T +P K Sbjct: 562 YMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFILPYK 613 >gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain [Ralstonia eutropha H16] Length = 503 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 18/255 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++ D RA+ A N A K+ F+ +S+ELRSPL I+GF L+ S Sbjct: 105 TCTDIEDQKRAQAAAEGANRA-------KSDFLSSMSHELRSPLNAILGFAQLM-ASDSP 156 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 Q ++ I + LL L+N++LDLA ++AG L+ + L + L E + Sbjct: 157 PPPPAQQASIDQILKAGWHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQ 216 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + +R++ S FV ADR RL QI +LSNA+ ++ TV + + GD Sbjct: 217 QALKRGVRMRFPSF-NFPCFVRADRTRLKQILLNLLSNAIKYNRDQGTV--EVSVTAGDR 273 Query: 720 I-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 I SV++ G+ + + + FNR A G G G+GL + + + L GG + Sbjct: 274 IRISVRDTGAGLAREQLAQLFRPFNRLGQEA--GPEEGTGIGLVVAKRLVELMGGSIGAE 331 Query: 776 SSDEGVTTINCRIPS 790 S+ E + +P+ Sbjct: 332 SAVEAGSVFWVELPA 346 >gi|70730559|ref|YP_260300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344858|gb|AAY92464.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1059 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 8/241 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF +VT V RAL + A+ K F+ +S+E+R+PL ++G +LL ++L Sbjct: 442 TFNDVTRHVEDARALDRARRSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLGLTRL- 500 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +S+QS Y++ I SS+ L L++D+LD++ ++AG M ++ D+L +V + A Sbjct: 501 --DSRQSDYLQTIQRSSSTLFQLISDVLDVSRIEAGQMSIDPLEFCPLDMLEDVLHAHAA 558 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 + D L + D R+ QI + +LSNA+ F+ G V+ L RD Sbjct: 559 SAQRRGLLFYACIDPNLPDLLLGDAARISQILNNLLSNAIKFTESGRVVLRVRLLELRDQ 618 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 I + V + G I +F F G GLGL+I E + GG + ++ Sbjct: 619 QARIEWQVTDTGIGISAQQQPQLFVPFFQVRDASNEAGAGLGLAICERLCQMMGGQMQVT 678 Query: 776 S 776 S Sbjct: 679 S 679 >gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 714 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 121/236 (51%), Gaps = 11/236 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A+ TE + A++ K F+ ++S+++R+P+ IIG T L++ +K +Y Sbjct: 307 KAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 364 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I SS LL ++ND+LD++ ++AG YS + D + E+ T+++E Sbjct: 365 ADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQQTF 424 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722 +I + +V D+ L+QIFS +LSNA+ ++ +G + + + F Sbjct: 425 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFL 484 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V +NG + D ++F+ F ++ + +G GLG++I ++ + GG + + S Sbjct: 485 VSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVES 540 >gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] Length = 983 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 147/268 (54%), Gaps = 19/268 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL+E A A++ K++F+ ++S+++R+P+ IIGFT L S Sbjct: 441 ILVMSDRTSDWKMNQALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFT-TLAVSN 499 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + + Q Y+ I +SS LL+L+NDILD++ +++G + L + + L+D+L+++K I Sbjct: 500 IDNQERVQD-YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTII 558 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711 + ++H + + + + D D+ RL Q+ +LSNA+ F+ G TV + K Sbjct: 559 SGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYPK 618 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767 A + + + VK+ G + ++ + +F+ F S R Q G GLG++I ++ +++ Sbjct: 619 AVKGSKLYEIRVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIVDM 676 Query: 768 HGGHVSISSSD-EGVTTINC---RIPSK 791 GG + + + +G I C RI S+ Sbjct: 677 MGGTIEVQTEQGKGTEFIVCLPLRIQSE 704 >gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] Length = 768 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K +F+ +S+E+R+P+ ++G LLKT LN +Q ++++ + S ++ L+N+I Sbjct: 316 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 371 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LD + ++ G M+ + + + ++ V T E ++ KV S G + AD+ R Sbjct: 372 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYSTVPTGRWYCADKAR 431 Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 L Q+ +L+NA+ F+++G + + R+ +++ VK+ G IPE K +F F Sbjct: 432 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREKANYLSIKVKDTGIGIPESAQKRIFRPFE 491 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV+ GG V++SS Sbjct: 492 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 526 >gi|298480193|ref|ZP_06998391.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] gi|298273474|gb|EFI15037.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] Length = 1365 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 802 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 862 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 919 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 920 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 980 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037 Query: 773 SISSSDEGVTTINCRIPS 790 ++S T +P+ Sbjct: 1038 MVASEPAQYTEFKVTLPA 1055 >gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 977 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 10/244 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ E L++ +A ++ +K+ F+ ++S+E+R+P+ +IG T+LL + Sbjct: 316 TVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDT--- 372 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SLN++Q + E I AS+ LL ++NDILD + ++AG M L+D++ + +A Sbjct: 373 SLNNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAK 432 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717 + H I + + + + + D R+ Q+ + ++SNA+ F+ G I + D+ Sbjct: 433 QAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQTGEVTIRTSCLDDQGS 492 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 V + G I + K++F F RR G GLGL+I + + G + Sbjct: 493 QCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGCIG 552 Query: 774 ISSS 777 + S+ Sbjct: 553 LEST 556 >gi|187935122|ref|YP_001885586.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187723275|gb|ACD24496.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 364 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 7/292 (2%) Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 +F + + D + + TL L++ ++ +I P+ + T +D + L E Sbjct: 76 MFIKKMNNITDYIEEISKTLNLVATGTMDVTI-PIRRKDELGTLA--SDVNKMAYNLNEL 132 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 + RK + KN+ + ++S++LR+PLT+I+GF +L++ K + + K + Y + Sbjct: 133 MKKERKWENQKNNLITNLSHDLRTPLTSILGFLELIE--KDTNNDEKLNHYCNISLEKAK 190 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L N ++ + + ++ +KLN + I + L+ +V +NN+ ++ S K Sbjct: 191 NLKNSIDQLFEFTKINNVDLKLNKTEISIEALIEQVTMGFIPAFEDNNMEFRIKSKNKGL 250 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD L ++F I+ N++ ++S+G + + ++N I N G I + +++ Sbjct: 251 KINADPILLARVFENIVINSIKYASEGKYLDIIIEKENDKVIVKFVNYGEEIKQKDIENM 310 Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FNRF ++ G GLGL+IV++ I LH G ++++SS E T +IP Sbjct: 311 FNRFYRVEKSCNKKEGTGLGLAIVKTVIELHLGEINVASSKEE-TQFKIKIP 361 >gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] Length = 993 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA T +EA A++ K+ F+ ++S+E+R+P+ +IG ++LL S +L+ +Q ++ E Sbjct: 322 RANTMASEA-DAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRS---TLDKEQKKFAET 377 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+AS LL+L+NDILD + ++A +++ L DLL+E+ + K + + + Sbjct: 378 INASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFL 437 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNG 727 D + + D R+ QI ++SNA+ F+ +G ++ ++ D GD F+V + G Sbjct: 438 PDEDIPLLLRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIRFTVSDTG 497 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 I E ++F FV R+ G GLGLSI GG + + S+ Sbjct: 498 IGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQVRST 549 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 19/234 (8%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L+ + EA +A+ K+ F+ ++S+E+R+P+ +IG T+L L T + K +Y++ + Sbjct: 813 LSARIEA-EQANRAKSEFLANMSHEIRTPMNGVIGLTELALMTVE----EPKAREYLQMV 867 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 S LL+++NDILDL+ ++AG + L L + L + + +++ + + Sbjct: 868 KKSGLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQV 927 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKN 725 + + + DR RL Q+ + ++ NA+ FS KG V + D+G+ F V + Sbjct: 928 APDVPDALMGDRGRLRQVLTNLVGNAVKFSHKG-WVRVSVGLDDGNVSSEQATISFEVAD 986 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IP D ++F+ F S+AH + G GLGLSI + + L GG + S Sbjct: 987 EGIGIPADKLSTIFDSFAQVDSSAHV-KYGGTGLGLSISKHLVELMGGTIQARS 1039 >gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 606 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 16/241 (6%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASST 618 A+R+ + I++ FV +VS+EL++P+ + GF + L G+L K+ +++ I S Sbjct: 367 AVRRLERIRSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQIIYDESD 423 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ DIL+L+ +++ + L +S + + ++ Q + + + +I ++ + +L Sbjct: 424 RLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENEL- 482 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD---FIFSVKNNGSSI 730 AD RL QI +LSN + ++ +G V + + DN D + + G I Sbjct: 483 YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGI 542 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 PE +F RF V A G GLGLSIV+ LH G +S+ S TT N + Sbjct: 543 PEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIEL 602 Query: 789 P 789 P Sbjct: 603 P 603 >gi|317130677|ref|YP_004096959.1| integral membrane sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315475625|gb|ADU32228.1| integral membrane sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 1015 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 8/264 (3%) Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586 ++P T+ F+ TD+ R L+EK L + D+ K+ F+ S+E R+PL Sbjct: 386 PVLPFLYLLTLSLFIAKRFTDTYRKNEELSEK---LVQTDKFKDEFLAKTSHEFRTPLHG 442 Query: 587 IIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 II + + L +Q + + ++ + + L +LVNDILDLA V + +N + Sbjct: 443 IIAILQSMTQKEDKAPLTLQQQEKINFVISKAKHLSSLVNDILDLAKVKRRELNVNIENV 502 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 + + V + + H++ ++I+ + + +AD +RL QI ++ NA+ ++ G Sbjct: 503 DVYANAHIVTEVFSYITHKD-VQIENLIPRDIPFVLADEKRLRQILYNLVDNAIKYTDAG 561 Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765 I A +NG S+K+ G IP + ++F + H GVGLGLSI + Sbjct: 562 KIQIY-ATEENGTITISIKDTGIGIPANKIDTIFYDYEQIGHADSGIGVGLGLSITRELV 620 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 L G +S+ S +T + +P Sbjct: 621 QLQQGEISVVSKLGVGSTFSFTLP 644 >gi|228914505|ref|ZP_04078114.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844824|gb|EEM89866.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 288 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 128/239 (53%), Gaps = 13/239 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QYV Sbjct: 48 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 106 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L N V+D+L+ ++ ++L S + + + ++ ++ + ++ + Sbjct: 107 LKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCIK 166 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D L D ++++F ++SN++ + G ++++ ++ + + +KN G IP Sbjct: 167 GDKGL-HVEMDVALMVRLFENVISNSIMYGKDGKQILIQISKRDMNVEIEIKNFGQCIPN 225 Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 + VF +F +RG++ G G+GL+I S LH G +++ S+D E V TI Sbjct: 226 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 280 >gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 370 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 6/236 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + E E L + ++++ FV +VS+E+++PLT+I+GF LK+ L ++ Y++ I Sbjct: 134 VREMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGLS--EGERRHYLDIIE 191 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A S L L +++L L ++++G + + L+ L EV + E + + + + Sbjct: 192 AESERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACEPLWTEKGLFLDMQVE 251 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733 D L Q++ +LSNA+ F+ G + ++ ++ SV + G I PED Sbjct: 252 PV--ELEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETGVCVSVADTGIGIRPED 309 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + VF RF + G GLGL+I + + +H G +S+ S +T +P Sbjct: 310 VSR-VFTRFFKADRSRGKPGNGLGLAIAKRIVEMHRGDISVESEPGRGSTFKVHLP 364 >gi|215433481|gb|ACJ66706.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 566 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 DS R + L L+ ++ + + +VS++L++PLT I + +L KLG L Q Sbjct: 177 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMLGREKLGPLTDAQ 236 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V+ +S +L +VND+L ++ + +G M+LN L + EV +++ Sbjct: 237 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRTLGALAEHCK 296 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R+ + ++ FV DR+R+ + ++ N + S TV ++ + ++G + +VK+ Sbjct: 297 VRVMIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 354 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 +G + + + VF+ F A G R G GLGL +V + LHGG + S S EG T Sbjct: 355 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 413 >gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 790 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 134/250 (53%), Gaps = 18/250 (7%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V + R + E+ A+ K+ F+ ++S+E+R+PL I+G T++L S+ L+S Sbjct: 267 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 323 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TK 661 Q + V+ I +SS LL L+NDILDL+ +++G ++L ++V D+ V QS+ +K Sbjct: 324 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMVLFQSK 380 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARD 715 + + + +++ + D R+ Q+ + ++SNA+ F+ G + + ++ Sbjct: 381 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKE 440 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G +F V++ G I +D ++F F R+ G GLGL+I +++ GG + Sbjct: 441 CGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQL- 499 Query: 774 ISSSDEGVTT 783 I++S +GV T Sbjct: 500 IATSTKGVGT 509 >gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555] gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016] gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555] gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 321 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 572 FVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 F+ +S+EL++PL I +L K+ + +K+ +Y++ + + L+ L+N++L Sbjct: 60 FISDISHELKTPLNVIFAAIQVLAACKSCEDQKCINKRDEYLKIMKENCYRLMKLINNLL 119 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ +D+G ++LN + ++ ++ S+ + I + ++ + D ++ Sbjct: 120 DISKLDSGFIRLNCHNENVVSIVEDIALSLVPYVESKGIELIFDTNVEEKIMAVDSDKME 179 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAH 747 +I +LSNA+ F+ + + D+ + VK+ G IPED K +F RF + + Sbjct: 180 RIILNLLSNAVKFTPPEGKIYVNVQCDDENVYIVVKDTGIGIPEDKLKVIFERFGQAGST 239 Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + +G G+GL + +SF+ LHGG +S+ SS G + R+P K Sbjct: 240 VEENQGSGIGLYLAKSFVCLHGGEISVKSSRGGGSEFTVRLPVK 283 >gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1130 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 3/233 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + ++N+ L+ AD++K+ F+ S+ELR+PL +IG + L G + Q + +E + Sbjct: 445 IKQQNDDLQTADKLKDEFLATTSHELRTPLHGMIGIAESLLAGANGPMQGAQRRQLEMLI 504 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L NLV+D+LD + G + ++ + L + V + + +RI Sbjct: 505 NSGQRLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRIINQIP 564 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L AD QRL Q+ ++ NA+ ++S+G V+ +N I V + G IP + Sbjct: 565 ADLPLVQADEQRLEQVLYNLVGNAIKYTSEGKIVLSATVLENQVRI-QVVDTGQGIPAEQ 623 Query: 735 CKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +F V + H R+G GLGL+I + L GG + +SS TT + Sbjct: 624 LEHIFEPLVQANTNHANYRQGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFS 676 >gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] Length = 764 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T +V+ E L E A+ K++F+ ++S+E+R+P+ ++G +LL + +L Sbjct: 190 LDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---NL 246 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q Y I S LL ++ND+LD + ++A ++L+ L ++EV + Sbjct: 247 SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTA 306 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 + + + + D L SFV D R+ Q+ + ++ NA+ F+S+G + + + GD I Sbjct: 307 RDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQITGISNAGDKI 366 Query: 721 FS----VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 S +++ G IPE+ + +F F V + Q G GLGL+I + I L GG + + Sbjct: 367 CSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWV 426 Query: 775 SSSD 778 S + Sbjct: 427 ESQE 430 >gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385] gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385] Length = 1020 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L S Q YV+ I+ S LL + Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++ + L L+ E + + ++ E I + D + + Sbjct: 558 LNDVLDYSKIEAGHLEIDQAHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 617 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 618 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLALDGQGIRFAVEDSGIGIAEEEQATLFDA 677 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVKAMGGELQLAS 713 >gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1504 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + IK+ F+ +S+ELRSPL I+G+T +L++ K +K +Q + I + + L++ Sbjct: 1127 NRIKDEFLAILSHELRSPLNPILGWTKMLQSRKFN--ETKTAQALASIERNVKLQTQLID 1184 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685 D+LD+A + G + L+ + + L ++ ++ T +I++ + +G D Sbjct: 1185 DLLDIAKILRGKLSLDVTPVNLLFVIESAIDTVNTAAIAKSIQLHPVLP-NIGQVSGDSN 1243 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 RL QI +LSNA+ F+ KG V ++ R + V + G I + +F F Sbjct: 1244 RLQQIVWNLLSNAIKFTPKGGRVEIRLERVDEQAHIIVSDTGKGINPEFLPHIFESFRQE 1303 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G+GLGL+IV + HGG ++ S EG+ T ++P Sbjct: 1304 DVSITRKYGGLGLGLAIVRQLVEAHGGTITADSPGEGLGATFTVQLP 1350 >gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818] Length = 2374 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 21/250 (8%) Query: 550 RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A+ A E N ++ A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ Sbjct: 1864 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1920 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YVE I + LL L+NDILD + ++AG MK++ I L + EV +++ E Sbjct: 1921 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1980 Query: 667 IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I L + D RL QIF +LSN+ F+ GS + ++ Sbjct: 1981 LETVEDLDSIDPDLL--VMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774 V + G I E+ +F F S A R G GLGLSI ++ I ++ GG + + Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2097 Query: 775 SSSDEGVTTI 784 S + TT+ Sbjct: 2098 QSKEGEGTTV 2107 >gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223] gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223] Length = 733 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 19/256 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF T + AE+ K +A KA K++F+ +S+E+R+P+ ++G +L +L Sbjct: 332 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 KQ Q++ + S ++ L+N+ILD + ++ G +L+YS L ++ +K ++ Sbjct: 385 --TVKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442 Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717 E ++ ++ I D + + D+ RL QI +LSNA+ F+ +G + + + G Sbjct: 443 LCFEKGLQFQLHSEIIDTRW--YYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIG 500 Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 D F V+++G IP+D +F F RR G GLGL+IV+ L G V Sbjct: 501 DEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGAV 560 Query: 773 SISSSDEGVTTINCRI 788 S+ S T R+ Sbjct: 561 SVQSEVGQGTCFEVRV 576 >gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 1233 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 6/221 (2%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+E+R+P+ ++G L+ S+L ++Q + S+ LL ++NDILD + Sbjct: 582 FLAMMSHEIRTPMNGVLGMIGLVLRSEL---TAEQRSMITLAKQSADNLLMILNDILDFS 638 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690 +++G + L L D+++ V + ++ + + I D ++ + + D RL QI Sbjct: 639 KLESGRLDLEEVEFDLADVISSVAELLSPQAEAKGLDIISFIDTRMTLARLGDPGRLRQI 698 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 ++ NA+ F+ GS VI D + F V + G IP D +F F Sbjct: 699 LINLVGNAVKFTGSGSIVIRLEPADGDEVRFDVIDTGIGIPADTLPLLFQEFTQADSSVS 758 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+I E L GG +S++S++ +T + IP Sbjct: 759 RRFGGTGLGLAICERLTRLLGGTISVTSTEGTGSTFSVIIP 799 >gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with ArcA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 778 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|295136279|ref|YP_003586955.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294984294|gb|ADF54759.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 815 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 136/256 (53%), Gaps = 15/256 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 + D R+++ E EA A+ + + + ++++LRSPL +IG+++L+ ++LG+ Sbjct: 290 IRDVRRSQQYRIELEEAKNFAETLLKRREQLMAAITHDLRSPLNTVIGYSELMNKTQLGN 349 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIAT 660 KQ Y+ I+ SS +L+LVND+LDL+ ++AG M + L+++ V+ +I Sbjct: 350 ---KQRHYLSQINKSSDFILHLVNDLLDLSKLEAGKMLVENLPFNPKKLISDTVQNNIPA 406 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716 ++++ I IS+ G + +D R+ QI + +++NA F+ KG+ + I +D Sbjct: 407 NLNKDLEVIIDISEEADGQYSSDPFRIKQIIANLVTNACKFTEKGNIIVSAEIETKTKDI 466 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 I VK+ G I ++ + +F F S + G + G GLGL+I +S +L G +S Sbjct: 467 QYLIIKVKDTGIGISKEKQEVIFEEF-SQENSGIEKKYGGTGLGLTITKSLTSLLKGEIS 525 Query: 774 ISSSDEGVTTINCRIP 789 + S + IP Sbjct: 526 LQSEQGKGSEFTITIP 541 >gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426] Length = 984 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 735 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 153 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 208 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 209 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 268 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 269 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 328 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 329 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 370 >gi|160914842|ref|ZP_02077056.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991] gi|158433382|gb|EDP11671.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991] Length = 525 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 125/231 (54%), Gaps = 18/231 (7%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + L KNE LR AD +++ +S++LR+PLT+I G D+L + + + Q Sbjct: 279 KKQSELRAKNEQLR-ADLLRS-----ISHDLRTPLTSISGNADMLVSKEQELAQKDRLQL 332 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S L+NLV ++L + ++ G ++L ++ D+L E + ++ K E+++ + Sbjct: 333 YEDIYDDSLWLINLVENLLSITRMEEGAIRLKLEPQMIEDILYEALKHVSRKKKEHHLHV 392 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 ++ D + A ++Q+ ++ NA+ ++ +GS + L A + V ++G+ Sbjct: 393 QIDDDLLMADMEA--HLIIQVIINLVDNAIKYTPQGSNITLHAYQKEDMVTIEVYDDGAG 450 Query: 730 IPEDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFINLHGGHVSI 774 IP+D + +F++F +RG +R +GLGL++ +S ++ HGG + + Sbjct: 451 IPDDKKEHIFDKF----YRGNTKIVDSKRSLGLGLALCKSIVHSHGGEIHV 497 >gi|157960737|ref|YP_001500771.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845737|gb|ABV86236.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1333 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 12/251 (4%) Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594 N T V++T + + L E A E K+ F+ +S+E+R+P++ I+ +L+ Sbjct: 652 NRHWTFTLVDITLLKQKQAELDEARLIAESATEAKSRFLAMMSHEIRTPISGILSLLELM 711 Query: 595 KTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 + +N+ + S + ++ S LLN+VND+LD + ++AG + L+ + L+ + E Sbjct: 712 ----VPHINTHEISGIHKNLTHSGNNLLNIVNDVLDFSKIEAGKLGLSPAVCQLSSFICE 767 Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVI 709 + Q + I+ K+ D KL S D RL Q+ + +L+NA F+++G +V Sbjct: 768 LAQPHIVHVERKGIKFKLWLDPKLAYSLTLDHLRLKQVLNNLLNNASKFTTEGEIWLSVD 827 Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 L ++ D I F+V + G I E +F F +RR G GLGLSI E + Sbjct: 828 LISSTDTEQTIGFAVTDTGIGISEKDITKLFIPFEQVDLSSERRFSGTGLGLSICEQLVK 887 Query: 767 LHGGHVSISSS 777 L GG +S++S+ Sbjct: 888 LMGGEISVTST 898 >gi|255014410|ref|ZP_05286536.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 602 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 359 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 416 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 417 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 476 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721 E I K +D++RL Q IL NA+ F+S G I + + + D Sbjct: 477 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSAEAQDVRL 535 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 536 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 592 Query: 781 VTTINCRI 788 CRI Sbjct: 593 ----GCRI 596 >gi|239908540|ref|YP_002955282.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798407|dbj|BAH77396.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 663 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 131/277 (47%), Gaps = 46/277 (16%) Query: 541 TFVNVTDSVRAER-----------ALTEK--------------NEALRKADEIKNSFVQH 575 T V+VT VRAER A+ E+ NE L++ D +K+ F+ Sbjct: 356 TVVDVTARVRAERRLEILNRHLREAVKERTGRLAVKAAELEAANERLQELDRLKSGFLAT 415 Query: 576 VSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQSQYVEYISASSTILLN------- 622 VS++LR+PLT+I+GF L+ + + + ++ E I+A+ I+ N Sbjct: 416 VSHDLRTPLTSIMGFAKLISRDFNKFFAPFAPGHERLTRQAERITANLGIIENEGERLTR 475 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVISDGKLGSFV 681 L+ND LDL+ +++G + + + ++ L+ +++ + +R + +G L Sbjct: 476 LINDFLDLSKIESGRAQWRDTEVDVSAALSRAANAVSADFAAKPEVRFTMALEGGLPPLY 535 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D RL Q+ +L NA F+ +G V L AA +G V + G IP + + +F++ Sbjct: 536 IDPDRLTQVLVNLLGNAAKFTDQGE-VKLAAAASDGLLRVVVTDTGHGIPRESLEKIFDK 594 Query: 742 F------VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F + G+R+G GLGL+I + + G V Sbjct: 595 FHQAQIGDTMEEHGRRQGTGLGLAICRQIVEHYKGRV 631 >gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1374 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 131/247 (53%), Gaps = 21/247 (8%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + EK + L A + K+ F+ ++S+ELR+PL +I+ + LL ++K G+LN KQ + Sbjct: 647 AQNVVEEKAKELASASKYKSEFLANMSHELRTPLNSILILSQLLASNKAGNLNDKQIESA 706 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL---LNEVKQSIATKMHENNI 667 + I++S + LL+L+N++LDL+ V+AG ++L + ++ +N + Q IA + + Sbjct: 707 KAINSSGSDLLSLINEVLDLSKVEAGKVELQIEDVSFQEIEQDINRLYQDIAV---DKGL 763 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR----D 715 + L + + D RL QI +L+NA F+ +G+ + AAR Sbjct: 764 YFDIALAADLPNEIKTDSLRLQQILRNLLTNAFKFTHEGAVTLSITQPTNEVAARMQQPK 823 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F+VK++G I ++ +F F R+ G GLGLSI + +L GG + Sbjct: 824 QSLVAFTVKDDGIGIKKEKQLGIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGTI- 882 Query: 774 ISSSDEG 780 + SDEG Sbjct: 883 LLKSDEG 889 >gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 776 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 9/266 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 S V E + PL NA+ + ++T+ RAE+ LT N L KAD K+ F+ + Sbjct: 363 SRGVCETVVKPLANARGDIYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATL 422 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 ++ELR+PL + ++L+ + S+ V + +LV+D+L+++ + G Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV--FDRQLQHMTHLVDDLLEVSRITQG 480 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 ++L + L + ++ + ++ + V + +AD RL Q+ +L+ Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLN 540 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 NA ++ G ++ L A R+ + + V+++G IP + SVF F ++ A + G+ Sbjct: 541 NAAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGL 600 Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780 G+GL++V LHGG V+ S G Sbjct: 601 GIGLALVRGLAELHGGTVAAFSEGPG 626 >gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens] gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str. Lens] Length = 910 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 12/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ +IGFT++L SKL L Q YV+ I +S+ LL+++N IL Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINAIL 354 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + +DAG + L+ + + ++EV + H+ I + I+D + V D R+ Sbjct: 355 DFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKVIDLIPITDINVPKMVLGDPLRI 414 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740 QI S +++NA+ F+ G +I D +F++ + G I PED K + FN Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ R + G GLGL I + G +S++S +T + RI Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521 >gi|303246750|ref|ZP_07333027.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491767|gb|EFL51647.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 939 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 22/301 (7%) Query: 500 FAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT----MLTFVNVTDSVRAERA 554 +AA++ D ER L+ T+ L D LE P+ ++ + ++V+VT+ +R R Sbjct: 367 YAALMG--DGER--LETTVLALRDGRFLERRSGPIRQGRSTIGRVFSYVDVTEEIR-RRD 421 Query: 555 LTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 TE+ + + +A + K +F+ +S+E+R+PL +IG T+ L G +Q + I Sbjct: 422 RTEQQKTMAEEASKAKGAFLAVMSHEIRTPLNVVIGLTEELLA---GEATGEQRDHFRII 478 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL +VND+LD + ++AG + L + +L+ V A + + Sbjct: 479 QQSAAHLLGVVNDVLDFSKIEAGKLVLERIDFNVRELVAGVADVFAREARVKGLDFSTRV 538 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727 D + +F+ D RL Q+ +L NA+ F+ GS + A +G V + G Sbjct: 539 DDAVPAFLRGDPGRLRQVLLNLLGNAVKFTESGSVSLDVAPAASGPPDRVGIAIRVADTG 598 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 I D + +F F A RR G GLGL+I + + GG +S+ ++ G + Sbjct: 599 IGIAPDRREGIFEDFQQGAGAIARRFGGTGLGLAISKGIVTRMGGTISVEANPGGGSVFT 658 Query: 786 C 786 C Sbjct: 659 C 659 >gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] Length = 412 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 13/237 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620 RK DE++ F+ VS+ELR+PLT+I G+ + L L +K+ ++++ I S + Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLENKELVKRFLKIIEEESARM 236 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L+ND+LDL ++ + + L +++ V + I EN + + V + + Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVK- 295 Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736 +++RL+Q+ ++ NA+ ++S KG + A D D+ + V++ G IP++ Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKESQS 354 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F +F V A + G GLGL+IV++ ++ HGG + + S T + +P + Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411 >gi|255526304|ref|ZP_05393220.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296185226|ref|ZP_06853636.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] gi|255510017|gb|EET86341.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|296050060|gb|EFG89484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Clostridium carboxidivorans P7] Length = 1116 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 16/269 (5%) Query: 521 LSDSVLEYSIIPLPNAQTM--LTFVNVTDSVRAER------ALTEKNEALRKADEIKNSF 572 ++D + EYS+I + + L F+ V +++ + E E L+ D++K+ F Sbjct: 380 INDILYEYSVIDTGSYAPIGILIFIFAQSYVASDKFSMAFSKIEEMTERLKSVDKMKDDF 439 Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632 S+EL++PL I+G + L L + + + + I S+ L NLVNDILD + Sbjct: 440 FAATSHELKAPLDGIVGLSKSLIDCNSNQLGNDERETLILIKNSARRLSNLVNDILDFSK 499 Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692 + + + L + + L+N V +S + M ++ I + + D R+ QI Sbjct: 500 IKSNDINLIMKPVDIRQLINMVTKSFKSFMSNKSVEILNKVEESVPYVYGDENRIQQILY 559 Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749 ++ NA+ F+++G I +A + GD+IF ++++ G I E +F + N G Sbjct: 560 NLIGNAVKFTNEGQIEI--SAAEKGDYIFITIEDTGIGIDESDIYKIFQPY--NQVEGIN 615 Query: 750 -QRRGVGLGLSIVESFINLHGGHVSISSS 777 Q G GLGL + + + LHGG + + S+ Sbjct: 616 KQYHGSGLGLYVTKKLVQLHGGELEVKST 644 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 111/218 (50%), Gaps = 4/218 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILL 621 K D++K F ++S+ELR+PL I L+++ L + +Y+ +S ++ LL Sbjct: 851 KNDKLKTEFFTNMSHELRTPLNVIWSTIQLIQSINANKLAAGYDMDKYLNIMSQNTLRLL 910 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+N+++D ++ G + L + + + E+ S A+ + I + ++ + Sbjct: 911 RLINNLIDTTKIEGGYLSLKLANGNIISTIEEITLSAASHVQSQGIELIFDTEVEEKYMA 970 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++ +I +LSNA+ F+ +G ++ + SVK+ G IPED S+F+R Sbjct: 971 FDGDKIERIMLNLLSNAIKFTEEGGSIFVNIYDLQDKVKISVKDTGIGIPEDKLDSIFDR 1030 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F V + + G G+GL++V+S + + G + + S+ Sbjct: 1031 FTQVDTSLSKKLEGSGIGLALVKSLVEMQKGRIYVKST 1068 >gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica] Length = 776 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK F+ ++S+ELR+PL +IGFT LKTS L +Q++Y+ I S+ LL Sbjct: 286 QEAARIKTEFLANMSHELRTPLNGVIGFTRQTLKTS----LTIQQTEYLHIIERSANHLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 N++NDILD + ++A + L +L + ++EV + NI++ D ++ + V Sbjct: 342 NIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHSIDPQIPNLV 401 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCK 736 D RL QI + ++ NA+ F+ +GS I ++ + +V + G I + Sbjct: 402 IGDPMRLQQILTNLIGNAIKFTEQGSVKIDINLVQQQHHKINLAMTVSDTGIGISPEQQP 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + I GG++S +S Sbjct: 462 HLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTS 503 >gi|237719085|ref|ZP_04549566.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451464|gb|EEO57255.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1360 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592 +L FV RA+ + + E + K +EI K F ++S+ELR+PL+ I+ + Sbjct: 797 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 856 Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 LL S L +Q ++Y+ + LL++VN +LD +AG M ++ + + + +LL Sbjct: 857 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 914 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + I + SD + F ADR + I +LSNA F+ G ++ L Sbjct: 915 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 974 Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 + + F+V+++G + + +F RF GQR+G G+GLS+V+ + H G + Sbjct: 975 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1032 Query: 773 SISSSDEGVTTINCRIPS 790 ++S T +P+ Sbjct: 1033 MVASEPAQYTEFKVTLPA 1050 >gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1218 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 9/237 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ +AE+ + + ++ +E+K+ F+ S+E R+PLT I+ T+LLK Sbjct: 973 DITEYKQAEQEIRQALAREQELNELKSRFISMTSHEFRTPLTTILSSTELLKYYSSKFTE 1032 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIA 659 K+ + E I ++ + ++NDIL L +AG + N + + L+ E +Q I Sbjct: 1033 EKKQIHFERIQSNVHHITQMLNDILLLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQQGIG 1092 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 H +++ G+L D + L I +LSNA+ +S V L+ + + Sbjct: 1093 ---HRHSLCFT--HQGQLTPVSLDEKLLRHILGNLLSNALKYSPIDRPVCLELTCRHNEL 1147 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IF +K+ G I E + +F F + G G GLGLSIV+ ++ HGG +++ S Sbjct: 1148 IFRIKDQGIGISETDQQRLFESFHRGTNVGNISGTGLGLSIVKKAVDRHGGTINLES 1204 >gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264] gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264] Length = 458 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ T+ I S+ +NG + ++ + +F Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEEMERIF 405 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G VS+ S+ TT+ +P Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 457 >gi|167031168|ref|YP_001666399.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] gi|166857656|gb|ABY96063.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] Length = 588 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 13/266 (4%) Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L YS+ P+ + Q +L V V V +RA + +++ FV S+ELR+P Sbjct: 334 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 383 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T + LL+ +++++ +E I L L+ND+L+ + +G+ KL + Sbjct: 384 VTGMHMAFGLLRERVKFPPDARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 443 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 L++LL + A + + I + + L AD +L ++ +L NA+ ++ Sbjct: 444 PCALDELLERAQLRFAEQAQQKQIELLKELEAPLPRIQADVAQLDRVLDNLLHNAIRHTA 503 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 G + L A R I S+++NG I +F FV + + G GLGL++ + Sbjct: 504 NGGRIRLHARRHAERVIISIEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 561 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + LHGG + + S T +P Sbjct: 562 IVQLHGGRMGVFSRPGQGTQFYMALP 587 >gi|332701913|ref|ZP_08422001.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552062|gb|EGJ49106.1| integral membrane sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 524 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 3/241 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A + LR +++++ F+ +S+E+R+PLT+I +L+K LG +N KQ +++E Sbjct: 283 QAFNRMTDQLRHEEQMRSDFISMLSHEIRTPLTSIREAVNLVKGGVLGDINEKQRKFLEI 342 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 L +L+ ++++++++A M L+ L E + + I I V Sbjct: 343 SGKEVNRLSSLLTRLMNVSSLEARDMVLDLQPADPGALTAETSERMQPTAEAKGIVILVD 402 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSI 730 S +L AD + + Q+ ++ NA+ FS S V+ LK+ IF V + G I Sbjct: 403 SPDRLPQVKADTENVRQVLLNLIGNALKFSPARSVVMVRLKSDEPGQRVIFCVTDQGPGI 462 Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 P + VF ++ + R G GLGLSI + ++ HGG + + SS ++ +P Sbjct: 463 PVEEQPFVFRKYYRAKGVRNSVDGAGLGLSISKRIVDAHGGDMWLESSPGQGSSFCFSLP 522 Query: 790 S 790 S Sbjct: 523 S 523 >gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] Length = 939 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 137/259 (52%), Gaps = 21/259 (8%) Query: 550 RAERALTEK-----------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 RA++ LTE+ + LR+A+++K+ F+ ++S+E+R+PLT I+G TD L ++ Sbjct: 444 RAKQQLTEQVTQRTAELQAIAQELREANDVKSQFLANISHEIRTPLTAILGQTDAL-INE 502 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L S + + + I S L +L+ND+LDL+ ++A ++LN S + +L+N+V Sbjct: 503 LYEPESLKDE-LRVIQRHSDHLKSLINDVLDLSKIEANRLELNISCFDIVELVNDVHAMF 561 Query: 659 ATKMHENNIRIKVISDGKLGS-FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 T+ N+R+ I D ++G+ F D R+ QI + +NA+ F+ G +I + Sbjct: 562 ITQAKAKNLRL--ILDNQVGNEFYTKLDLIRVKQILINLCANAIKFTHAGQIIIALNKSE 619 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G + VK+ G + K +F F + RR G GLGLS+ + + GG++S Sbjct: 620 QG-LVIIVKDTGIGMSSKQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYIS 678 Query: 774 ISSSDEGVTTINCRIPSKE 792 + S + + + +P E Sbjct: 679 VQSEYKKGSQFSFFLPCAE 697 >gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1865 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 15/219 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627 K+ F+ ++S+E+R+P+ I+GF+DLL+ GS++ Q + Y+ I+AS LL L+NDI Sbjct: 1383 KSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQPRAYLNSIAASGRTLLALINDI 1438 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686 LDL+ ++AG ++L Y + + L+ E+++ + K + ++ + V I + + + D R Sbjct: 1439 LDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKSLSLLVEIDENVPTAILFDPIR 1498 Query: 687 LLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 L QI + NA+ F+ G I L + + ++ + G I + S+F Sbjct: 1499 LRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQIEITIADTGIGICLEQQHSIF 1558 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + + R+ G GLGL+I + + GG V + S Sbjct: 1559 EAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLES 1597 >gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 896 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N++ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVKFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|229097095|ref|ZP_04228061.1| Sensor histidine kinase [Bacillus cereus Rock3-29] gi|228686324|gb|EEL40236.1| Sensor histidine kinase [Bacillus cereus Rock3-29] Length = 312 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 3/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I Sbjct: 74 LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 T L L+ND+ + V + L + I + +LL ++ ++ E NI+ + Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +AD ++L+++F ++ NA+ + ++G + L A N + N G IP Sbjct: 193 SQKLMVLADGEKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V + G GLGL+I +S + LH G + + S D+ T +P K Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311 >gi|227529759|ref|ZP_03959808.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540] gi|227350243|gb|EEJ40534.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540] Length = 380 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 537 QTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595 Q ++T VN + DS A R++ ++ RK ++ K+ + +VS++LR+PLT+IIG+ L++ Sbjct: 123 QHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGLIE 176 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 + S +Y + + NLV D+ + V +N I LN LL ++ Sbjct: 177 DKQYRS-EEDILKYTHIAYEKAKQMKNLVEDLFEYTKVQQHGSPVNIMKIDLNQLLEQLT 235 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 S + I I + AD ++L ++FS +++NA+ + + S + + A + Sbjct: 236 ASFELEAQHKGIEITSSVEPNPLMIEADPEKLGRVFSNLVANALKYGNGASYIKVAAHQK 295 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + V N+G+ IP + +F RF R G GLGL+IV+S ++LH G+V Sbjct: 296 QDQVVVKVSNDGTPIPAKSIEHLFERFYRAEGSRSRATGGTGLGLAIVKSIVDLHHGNVQ 355 Query: 774 ISSSD 778 ++S D Sbjct: 356 VTSDD 360 >gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] Length = 737 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +V RA L + A +A+ K+ F+ +S+ELR+P+ ++G L++ S Sbjct: 340 FQDVDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLMEGSVKQE 399 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 +N ++ Q S S+ LL +++DILD + ++AG + L+ + +++LL+ +++ + Sbjct: 400 VNKRRLQIA---SNSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIE 456 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 + + I + + + + D R+ Q+ ++ NA F+ G ++ + +N D Sbjct: 457 VEKKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFTQNGQIIVRAQSGENRDLKL 516 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SV++ G IP D +F F R+ G GLGL+I + L G +S+ S Sbjct: 517 SVQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQG 576 Query: 780 GVTTINCRIPSKE 792 + +P +E Sbjct: 577 KGSEFTLHLPLRE 589 >gi|75764345|ref|ZP_00743870.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488168|gb|EAO51859.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 389 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 159 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 217 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ ++ E NI + + +A Sbjct: 218 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 277 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 278 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 337 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 338 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 388 >gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] Length = 959 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 130/253 (51%), Gaps = 30/253 (11%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ LN +Q+ YV+ I+ S + LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDE---GLNKQQAYYVDVINRSGSTLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG +++ L ++ +V+Q + + E ++++ + + +LG + Sbjct: 522 LNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELGRYWRG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D R+ Q+ + ++ NA+ F+ G I A G +F V ++G I +++F+ Sbjct: 582 DMTRISQVLNNLVGNAIKFTDHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQQNLFD 641 Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS---------------------D 778 F ++ + G GLGL+I + + GG +S+ SS + Sbjct: 642 AFTQASGGLSSKGGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIPLAQGNEVEVN 701 Query: 779 EGVTTINCRIPSK 791 E V INCR+ +K Sbjct: 702 EAV--INCRLKAK 712 >gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 931 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L+ L++V +A HE + + + I + F Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I R +++ G I E Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDTGIGIAELQQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504 >gi|218897512|ref|YP_002445923.1| sensor histidine kinase [Bacillus cereus G9842] gi|218542283|gb|ACK94677.1| sensor histidine kinase [Bacillus cereus G9842] Length = 385 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ ++ E NI + + +A Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384 >gi|163793384|ref|ZP_02187359.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181186|gb|EDP65701.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 458 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 13/247 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605 D+VRA+ L ++ K + ++S+ LR+P+ +IGF+DL+ LG L + K Sbjct: 202 DNVRADLGLAARH---------KWQTLAYLSHHLRTPMNAVIGFSDLMARESLGKLGHPK 252 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 +Y E I S L +N ILD+A ++ G M L+ S L L+ E ++ Sbjct: 253 YREYAEGIQFSGVEALRAINAILDVAEIETGTMTLSLSDENLCVLVAECVAEQSSNATSR 312 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVK 724 + ++ S D +RL QI ++SNA+ F+ KGS + +A D + V Sbjct: 313 KVVLRCTLPDMPASVRGDPKRLRQILDGLISNAIRFTPKKGSVTVSVSAEDEEWWTVQVS 372 Query: 725 NNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G + D K F FV N + G+G+ L++ LHGG + S T Sbjct: 373 DTGIGMSADKVKEAFIPFVRLDNPLTQEFSGIGVSLTLARRLTTLHGGEFDLDSGTGRGT 432 Query: 783 TINCRIP 789 T+ R+P Sbjct: 433 TVVVRLP 439 >gi|84496734|ref|ZP_00995588.1| putative two-component sensor [Janibacter sp. HTCC2649] gi|84383502|gb|EAP99383.1| putative two-component sensor [Janibacter sp. HTCC2649] Length = 351 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 12/237 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA R+A+ + + +++ELRSPLT + GFT L +++ +E I + + Sbjct: 120 EARRRAEHDHAALISTIAHELRSPLTGVKGFTSTLLRRWDQFTEAQRITMLEAIDSDADR 179 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDGKLG 678 L L+ D+LD++ +D G ++++ + +L V++++A + + V S + Sbjct: 180 LTRLITDLLDVSRIDTGKLRIHEIPVDSKAMLTRHVERAVAAGHDADGFTVDVESGAE-- 237 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 AD RL Q+ S ++ NA+ + S V+L A+ D + SV ++G IP + Sbjct: 238 EIYADSDRLDQVLSNLVENAI--RHRQSKVVLSASPHTADGERGVVISVSDDGPGIPPEQ 295 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 ++VF RF H G GLGL IV+ + HGG I + G + +PS+ Sbjct: 296 RRAVFGRFW---HGPSGTGTGLGLYIVKGVVEAHGGWSQIDDARGGGAVVRVFLPSE 349 >gi|120556576|ref|YP_960927.1| integral membrane sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120326425|gb|ABM20740.1| integral membrane sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 595 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 6/221 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ EAL D++K+ FV VS+ELR+PLT+I G LL G L K + V+ Sbjct: 350 LMEEREAL---DQMKDQFVATVSHELRTPLTSINGSLKLLDREAAGELPEKARKMVQVAL 406 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L L++D+LD AG M L TI +++ L + + + + + + Sbjct: 407 RNGEQLQLLISDLLDFNKAIAGKMMLQIGTIQVSEALEQAIEGNRSMATHYGVSLCAVPA 466 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733 + AD QRL QI +SNA+ FS G+ V L A N + I F + ++G + E Sbjct: 467 AEPLVVRADPQRLRQILDNFISNAIKFSPTGAAVQLSARAVNQNTIRFIISDHGPGVDEQ 526 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +F RF + + + + G GLGL+I +L G V Sbjct: 527 FIPHLFERFAQANPSSKQAQSGTGLGLAICRELAHLMHGQV 567 >gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 507 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 19/239 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +A A + K+ F+ VS+E+R+P+ ++G T+ + + L +++Q YVE Sbjct: 222 LEVARKAAEAASQAKSDFLAAVSHEIRTPMNAVLGMTEAVLHTPL---DARQRDYVETAR 278 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 S+ LL+++NDILD + ++AG ++L L +++ +++ + + + + + Sbjct: 279 ESALHLLDVLNDILDFSRIEAGRLRLVSEDFDLPAVVHSAMKTVGLEAGQKGVALDFEMM 338 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FI 720 +G D RL Q+ +L N + F+ +G+ + D G Sbjct: 339 EGAPRFLRGDPGRLRQVLINLLGNGVKFTEQGAVRVTVGPWDGGQGGESPPDPERPVGVR 398 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 FSV ++G IP + +++F F RR G GLGL+I + L GG +++ S+ Sbjct: 399 FSVSDSGPGIPPEFGQAIFEAFRQGDGTTSRRYGGSGLGLAICRDLVRLMGGEITVRST 457 >gi|317154222|ref|YP_004122270.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944473|gb|ADU63524.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 843 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 16/222 (7%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQY---------VEY 612 D++K F+ VS+ELR+P+T+++GF ++ + L SL V Sbjct: 370 DQLKTDFISTVSHELRTPMTSVLGFAKIIGRKIRAGVLPSLGGDADASRIAAQVLDNVGI 429 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + L ++ND+LD+A ++AG + + + D++ + ++ I + + Sbjct: 430 IVTEAERLTEMINDVLDIAKMEAGQVVWRDKAVFMGDVMRQAIEATRGLWSAKGIEVVLD 489 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + L D RL+Q+ ++SNA+ FSS+G V +A D + SV ++G IPE Sbjct: 490 VEEGLPPLRGDHSRLVQVMVNLISNAVKFSSRGP-VTCRAHLDRNAVLVSVADHGPGIPE 548 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 +F++F V + + G GLGL I + HGG + Sbjct: 549 KFIHEIFDKFKQVGDTLTEKPSGTGLGLPICRQIVEHHGGRI 590 >gi|153003412|ref|YP_001377737.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026985|gb|ABS24753.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 816 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 130/244 (53%), Gaps = 15/244 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +N LR+AD K+ F+ +++ELR+PL + LL+ G+ + + + Sbjct: 442 LQGRNAELREADRRKDQFLAMLAHELRNPLAPVTNAVRLLQ--DYGADAHVRERALAAAE 499 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIK 670 + LV+D+L+++ V +G + L T+ L ++ E QS+ A++ H + + Sbjct: 500 RQVRHMARLVDDLLEVSRVRSGKVCLRKETVELARVVREAVQSVDELVASRGHALALEL- 558 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 D L D RL Q+ +L+NA+ ++ G + ++ R+ + + +V+++G I Sbjct: 559 --PDAPL-LVEGDAVRLTQVVENLLTNAVKYTDPGGHLRVELRREGREAVLAVRDDGIGI 615 Query: 731 PEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 ++ ++F FV A +G R G+G+GLS+V++ +++HGG V ++S+ G +T Sbjct: 616 APELQDTIFELFV-QAEQGVDRSRGGLGIGLSLVKTLVDMHGGAVGVTSAGPGQGSTFTV 674 Query: 787 RIPS 790 R+P+ Sbjct: 675 RLPA 678 >gi|170726313|ref|YP_001760339.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811660|gb|ACA86244.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1680 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 30/308 (9%) Query: 506 SFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEAL 562 S ++ + L+ + E L D L+ S L QT L D + + RA LT K + L Sbjct: 926 SLVEQTQRLKASEEELKDQSEALKVSNKELEEKQTFLK--RQRDEIESARADLTVKADEL 983 Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 A + K+ F+ ++S+ELR+PL +++ L +K +LN + + + I LL Sbjct: 984 ALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNKSKNLNETEVEDAQVIFDGGNNLLC 1043 Query: 623 LVNDILDLATVDAG-----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 L+NDI+DL+ V+AG I ++N ST+ N L +V IA K E IKV D KL Sbjct: 1044 LINDIMDLSKVEAGKLSIHIEEVNISTLCRN--LRQVFNPIA-KNRELEFDIKV--DEKL 1098 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD----------NGDFIFSVK 724 + V +D R+ QI +LSNA+ F+ GS + +A D N F+V Sbjct: 1099 PATVSSDGHRIEQILRNLLSNALKFTEAGSVTLFIGYSAADTVFSHSCLDPNTALSFAVV 1158 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP++ +++F F R+ G GLGL+I L GG + + S + Sbjct: 1159 DTGIGIPQNKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRLLGGEIQLESEPNQGS 1218 Query: 783 TINCRIPS 790 T +P+ Sbjct: 1219 TFTLFLPN 1226 >gi|47564388|ref|ZP_00235433.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47558540|gb|EAL16863.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 458 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 16/237 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L+T K+ +++ Y++ I S Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-----VISD 674 + +L +L LA++D L L + +V + K E +I ++ +I Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDIIIQ 347 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G D L Q++S I +N++ FS+ G T+ + S+ +NG + ++ Sbjct: 348 G-------DENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVMISISDNGIGMEKEE 400 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 401 MDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVQVELP 457 >gi|283850923|ref|ZP_06368208.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283573569|gb|EFC21544.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 575 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 171/379 (45%), Gaps = 49/379 (12%) Query: 447 VAVFGP--------DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +A FGP DGR+ +NP RSL + L G + +IAA +R G Sbjct: 58 LAAFGPVCLLVCDRDGRVLEANPRTRSLLGLAAD-LPAGLVLGDIAAPRTR------GGS 110 Query: 499 LFAAIITSFDDERKSLQG--------TLELLSDSV------LEYSIIPLPNAQTMLTFVN 544 L D + G +LE L V + + PL A+ V Sbjct: 111 LLPDPAHPSDPDAPDAPGPDVPADGASLEWLFRGVDGDWFPADVRMSPLAGAEAGRYLVL 170 Query: 545 VTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 D A AL EA +AD K+ F+ ++S+E+R+PL ++G LL+++ + Sbjct: 171 FEDDGEAREMVTALVAAKEAAERADLAKSEFLANMSHEVRTPLNGVLGMLQLLEST---A 227 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ +Q+ Y A+ LL ++N ILD + D G + YS + +L + ++ Sbjct: 228 LDPEQADYAATALAAGRGLLGIINGILDFSRATRGDIGPRPVTYSPLT---VLRGIIEAF 284 Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR 714 + + I + + + + + V D R+ Q+ S ++SNA+ F+ +G+ T I+ A + Sbjct: 285 SDQARAAGIGLSLAAGEDVAAAVRGDATRVRQVVSCLVSNAVKFTERGAVAVTAIVPAGK 344 Query: 715 DN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 + G ++ +V + G I + +F F V + +R G GLGL++V+ L GG Sbjct: 345 EGEGRWLRIAVSDTGIGIAPEHAARIFEPFTQVDGSFTRRRSGTGLGLALVKRLTALMGG 404 Query: 771 HVSISSSDEGVTTINCRIP 789 V + S TT+ C +P Sbjct: 405 SVRLESRLGRGTTVTCDLP 423 >gi|254784846|ref|YP_003072274.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237684144|gb|ACR11408.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 573 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 16/255 (6%) Query: 536 AQTMLTFVNVTDSV------RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589 A + TF N+T V R L EKN AL KA K++F+ ++S+ELR+PL +IG Sbjct: 158 AWLVFTFGNITLGVINSAMIRLRTRLREKNVALEKALNAKSTFLANMSHELRTPLNGVIG 217 Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649 LL+ + LN++Q + IS SS LL ++N+ILD + ++AG + L + + Sbjct: 218 MVSLLEET---PLNAEQRKISGIISTSSKNLLEVINNILDFSKIEAGKVALTQAPFDPHK 274 Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--- 705 ++NE+ + + + ++ I+ + D L Q+ ++SNA+ F+ G Sbjct: 275 IVNEIYKISTANARDKKLDFRLNIARNLPKRLIGDAFYLKQVLLNLISNAIKFTQMGYVE 334 Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762 + ++K D F + ++G I + VF +F N+ Q G GLGLSI Sbjct: 335 FAIEVIKLEADRTFLRFRISDSGVGIDKKQQAVVFEKFAQEDNSTTRQFGGTGLGLSISS 394 Query: 763 SFINLHGGHVSISSS 777 + G +++SS+ Sbjct: 395 QIVASMGSQINLSSA 409 >gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 755 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%) Query: 526 LEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYEL 580 LE + +P+ +A + ++V + + A + ++ E R A E K F+ +S+E+ Sbjct: 332 LETNQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEI 391 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+ +IG LL+ S LN +Q Y I +S+ LL L+ND+LD++ +DA + L Sbjct: 392 RTPMNGVIGMAQLLRDS---GLNEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVSL 448 Query: 641 NYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 + + D + +K K + + IK +L D +R+ QI + Sbjct: 449 SCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHG---DDRRIRQILLNLAG 505 Query: 697 NAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752 NA+ F+ +G + A G +FSV + G IP +M VF RF RR Sbjct: 506 NAIKFTERGQVQVTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRF 565 Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G GLGL+I GG +S+ +SD G+ + Sbjct: 566 GGTGLGLAISRRLAEAMGGSISV-ASDLGIGS 596 >gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827] gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827] Length = 922 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 132/255 (51%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + ++++ V+ E++L + +A +A+ K+ F+ VS+ELR+PL IIG +LL+ Sbjct: 415 AICVLIDISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRL 474 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + L+ K ++ V + SS++LL +++DILD + +++ + + Y D+ V + Sbjct: 475 E---LSDKANRLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLAN 531 Query: 658 IATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + I + I ++D RL Q+ S I++N++ F+ G V RD Sbjct: 532 YLPLVAKKQIALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDSG-FVFFYVWRDE 590 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +K++G +P+ + +F+ F V + + +G GLGL+I E INL G + + Sbjct: 591 NYLKIEIKDSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEV 650 Query: 775 SSSDEGVTTINCRIP 789 +S ++ RIP Sbjct: 651 NSQIGLGSSFIIRIP 665 >gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] Length = 814 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 ++ KN+ R+ E+K++F+ ++S+E+R+P+ + G ++LL L++KQ +YV I+ Sbjct: 315 ISSKNQ--RRIAEMKSAFLANMSHEIRTPMNAVTGVSELLLRE---DLSAKQREYVNTIA 369 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS LL+++NDILD + +++G L L L+ ++ K+ + + D Sbjct: 370 HSSNSLLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLD 429 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDF--IFSVKNNGSSI 730 KL +F+ D R+ QI +L NA+ F+ +G + + R +NGDF + +V++ G I Sbjct: 430 EKLPAFLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGI 489 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F+ F V H G GLGL+I + + G + + S Sbjct: 490 RKQDMDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVES 537 >gi|192292979|ref|YP_001993584.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286728|gb|ACF03109.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1191 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +++ R E L++ +A K + +S+E+R+PL IIGF +++ + G Sbjct: 938 FRDLSQLQRTETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 997 Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L N + Y++ I AS ++ +V+D+LDL+ ++ G + L +++I LN+L+ + + Sbjct: 998 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELVEQSVAVMQP 1057 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719 + + I I+ L + VAD Q L QI ++S ++ ++ VI+ A D G+ Sbjct: 1058 RANRERIIIRTSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVSTALSDAGEV 1117 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL--SIVES 763 + V++ GS + +D + F + + R + GV L L ++VE+ Sbjct: 1118 VLRVRDTGSRLNDDELAAALQPFRTPSDRTEAAGVSLSLTKALVEA 1163 >gi|156973250|ref|YP_001444157.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi ATCC BAA-1116] gi|156524844|gb|ABU69930.1| hypothetical protein VIBHAR_00931 [Vibrio harveyi ATCC BAA-1116] Length = 786 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A D+ I V++ Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDYATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IP++ +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|118445102|ref|YP_879165.1| two-component sensor histidine kinase [Clostridium novyi NT] gi|118135558|gb|ABK62602.1| two-component sensor histidine kinase, putative [Clostridium novyi NT] Length = 463 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 14/233 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISAS 616 + + K +++K F+ +S+ELR+PLT+I G+T L L N+K S++ ++ I Sbjct: 233 QEILKNEKLKTEFIASISHELRTPLTSIKGWTVALN---LCDPNNK-SEFEDGLKIIEEE 288 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L NLV ++LD + + +G + L + +++LL +++ + + ++NI + + + Sbjct: 289 TDRLSNLVEELLDFSKLSSGKITLKKDYVDIHELLRYLQKQLQPRASKDNINLSLECKNE 348 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + + AD RL Q F IL NA+ F+S V + + + I S+K+NG IP D Sbjct: 349 IPNIYADINRLKQSFMNILDNALKFTSSDGEVKITLSSNKDSVIISIKDNGCGIPLDDLP 408 Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINC 786 V +F ++GQ + G+GLSI I+LH G++ I S ++G I C Sbjct: 409 RVTEKF----YKGQNSKSKNGIGLSICNEIISLHNGNLQILSEENKGTEVIVC 457 >gi|159901169|ref|YP_001547416.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894208|gb|ABX07288.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 893 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 33/347 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 + +++GV V PDG++ L N ++ E L G T S G +L Sbjct: 547 LQSIADGVIVLDPDGKVILVNHTATAMLGASEADLL-GKSFAEFQLTPL-----SGGAEL 600 Query: 500 FA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 FA T+F E S +L + P+ V V V ERA+ Sbjct: 601 FATPTATTF----------YETTSQRILTMNAAPVEREGLQSGEVLVLHDVTEERAM--- 647 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 D K F+ +S+ELR+PLT+I G+ DLL +G L +Q+Q++ I Sbjct: 648 -------DRAKTDFIATISHELRTPLTSICGYADLLLRGFVGPLTDEQTQFMSTIRQQGQ 700 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 ++ ++ +++ +A+++AG M+ L++LL + Q++ + +++ + + Sbjct: 701 SMVEVLQNVIVIASIEAGNMEPQIEQHSLDELLPPIAQALQKGFDQKQLKLIIDLPENMP 760 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 V DR + +++L NA ++ G TV ++A +V + G I + + Sbjct: 761 YIVVDRDHFKIMLTQLLENARRYTQTG-TVTVQAKAVEQRIQIAVIDTGPGIASQDFERL 819 Query: 739 FNRFVSNAHR----GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 F RF + + RG+GLGL+I + + + G + + S++GV Sbjct: 820 FERFQRGGEQSGLTSKERGIGLGLAITKQLVEQNNGKIWV-ESEQGV 865 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 9/225 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ +S+E+R+P+ ++GFT+LL + LN +Q +++ + + LL ++ Sbjct: 820 ANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDT---PLNEQQRDFLQTLHQAGEALLTII 876 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + +++G + L + + + +V +A+K E + + + + + D Sbjct: 877 NDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPAQIKGD 936 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 RL QI ++ N + F+ +G + R+ DF+ F V++ G IP D +F Sbjct: 937 VTRLRQILVNLVGNGIKFTHEGQVAVHVGVLKREGKDFLQFQVQDTGIGIPRDRLDRLFK 996 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F V + + G GLGL I + L GG +S+ S++ TT Sbjct: 997 PFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTT 1041 >gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 784 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 158/344 (45%), Gaps = 29/344 (8%) Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511 P GR +NPA S+ SP IR + S+ Y + D AI+ +ER Sbjct: 281 PQGRFLEANPATASILGYS----SPEESIREVKDIGSQVYVNPEQRD---AIMRMLLEER 333 Query: 512 KSLQGT---LELLSDSVLEYSIIPLP------NAQTMLTFV-NVTDSVRAERALTEKNEA 561 + T + S S+L I P + + FV ++T+ VR ER L A Sbjct: 334 RQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELRAAKSA 393 Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 A+ K+ F+ +S+E+R+P+ I+G ++ + + +Q + + S+ LL Sbjct: 394 AEAANLAKSEFLATMSHEIRTPMNGILGMVEVAMRQE---PSPAVTQSLRLVRQSARALL 450 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSF 680 +++ DILD + ++AG M+ +L +LL +A + +R+ K I+ + Sbjct: 451 DIIGDILDFSRIEAGKMERKEQRFLLRELLRPTLDLLAQTAVDKGLRLSKHIARDVPEAL 510 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG--DFIFSVKNNGSSIPED 733 + D L Q+ +L NA+ F+ +G + +A+D+G F+V ++G IPED Sbjct: 511 LGDAASLRQVLVNLLGNAIKFTHEGEVALDVDLAEPSAKDSGYVRLRFTVSDSGIGIPED 570 Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +++F F G GLGLSI + L GG + + S+ Sbjct: 571 KLQTIFEPF-GQLDGASYAGTGLGLSISAKLVALLGGRLEVRST 613 >gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 781 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 13/247 (5%) Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +A + KA + K F+ +S+ELR+PL I+G + +L+ +K L+ +Q + Sbjct: 267 RDITERKQAENIVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTK---LDKEQFAW 323 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V I AS L N+ NDI+D+ + ++L+ T+ + D E+ I + + Sbjct: 324 VSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGLAF 383 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVK 724 L FV D RL QI +L NA+ F+ KG + A GD I F V Sbjct: 384 DTDIKEPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAHTAGDGISHVKFCVG 443 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP+ +F + V+ G G+GL+I + ++L G + +SS T Sbjct: 444 DTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGDIKVSSEIGKGT 503 Query: 783 TINCRIP 789 +P Sbjct: 504 CFTVELP 510 >gi|311278386|ref|YP_003940617.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308747581|gb|ADO47333.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 1061 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 550 RAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R++R L E+N+A ++A+E K +F+ H+S+E+R+P++ I+GF +LL+ S + Sbjct: 568 RSQRLLEVERNKA-QQANEEKRAFLSHMSHEIRTPVSAIMGFLELLQLSP-AHFTPEDKA 625 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ + +S LL L+ +ILDL +++G++++ + + L+ E + + I Sbjct: 626 SIDQAAQASRSLLKLIGEILDLEKIESGLLEVVPQWVYPDTLVMEKMSLFSALAAQKGIE 685 Query: 669 IKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 ++ D +L S D Q L Q+ + ++ NA+ F+S+G V++ + + + SV + Sbjct: 686 LRY--DSRLDSKETMRLDPQLLGQVLTNLIGNAVKFTSQGH-VLVSSMKLRDTLVLSVSD 742 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 +G I + K +F F Q G GLGL+I + + G + + S+ TT+ Sbjct: 743 SGPGISAEEQKRLFTAFSQGTVGEQHSGSGLGLAISRALVTQMAGTIVLQSAINQGTTVT 802 Query: 786 CRIP 789 +P Sbjct: 803 LNLP 806 >gi|229144520|ref|ZP_04272923.1| hypothetical protein bcere0012_16800 [Bacillus cereus BDRD-ST24] gi|228638933|gb|EEK95360.1| hypothetical protein bcere0012_16800 [Bacillus cereus BDRD-ST24] Length = 276 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 131/245 (53%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 30 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 88 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ + + L+ ++ ++ + N+ Sbjct: 89 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 148 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + SD L V D ++++F ++ N++ + G + ++ + + +KN G Sbjct: 149 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 207 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S +LH G +++ S+D+ T Sbjct: 208 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 263 Query: 785 NCRIP 789 ++P Sbjct: 264 TVKLP 268 >gi|218231270|ref|YP_002367235.1| sensor histidine kinase [Bacillus cereus B4264] gi|296503089|ref|YP_003664789.1| sensor protein VanS [Bacillus thuringiensis BMB171] gi|218159227|gb|ACK59219.1| sensor histidine kinase [Bacillus cereus B4264] gi|296324141|gb|ADH07069.1| sensor protein vanS [Bacillus thuringiensis BMB171] Length = 385 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384 >gi|91772433|ref|YP_565125.1| histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711448|gb|ABE51375.1| Histidine kinase domain protein [Methanococcoides burtonii DSM 6242] Length = 235 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+PL ++IGF+ +L K G+ + Q +Y+ I + LL + N+IL Sbjct: 11 KSEFIMNMSHEVRTPLNSVIGFSSVL-LDKPGNRDESQVRYLHNILFNGKHLLEIFNEIL 69 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 ++ +++G M +++++++E++ S+ E I + I D + AD + Sbjct: 70 AISKIESGAMVFQPKKFLISNVISEIETSMMPFALEKGIILTHIIDVENAIMNADEFKFK 129 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSN 745 I ++ NA+ F+ G V ++ + F VK+ G I P + K +F +F V + Sbjct: 130 HILYNLVHNAIKFTPDGRHVTIETKKCGKSMCFFVKDTGIGILPTNQIK-LFEQFYQVDS 188 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + G+GLGL+IV+ F+ +HGG V I S E +T IP Sbjct: 189 STTRKYGGIGLGLNIVKKFVEIHGGKVWIESEVEKGSTFGFSIP 232 >gi|88608550|ref|YP_505906.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] gi|88600719|gb|ABD46187.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] Length = 447 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E++ + K+ F+ +VS+EL++PL IIGF+DL++T+++ L ++ +Y I Sbjct: 208 LKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLIRTAEV--LGTEHREYANDIY 265 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLNL+NDILD + + +++ + L L + TK E I S+ Sbjct: 266 YSGNHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKEIKIVKSFFSN 325 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-D 733 L +D +R+ Q+ ILSN++ F+++ + + R + + +NG IPE D Sbjct: 326 KIL--IKSDHKRVKQVILNILSNSIKFTNEDGLIRISIIRLPSEIEIEISDNGVGIPEKD 383 Query: 734 MCK--SVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + K SVF + SN ++ G G+GL + + + L GG I S + T + R+P Sbjct: 384 IAKALSVFGQ--SNTELSRKYDGAGIGLPLSKKLVELMGGVFEIESKEGSGTVVKIRLPY 441 Query: 791 KE 792 +E Sbjct: 442 RE 443 >gi|99081348|ref|YP_613502.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] gi|99037628|gb|ABF64240.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040] Length = 896 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 14/237 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608 R L E N+ L + E K++F+ VS+ELR+P+T++ F+++L+ SLN ++Q + Sbjct: 651 RTALQLRETNQKLTRLSEQKDAFLSQVSHELRTPMTSVRAFSEILRDEP--SLNPAEQHK 708 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 Y I + L L+ND+LDL+ +++G + LN S L D+L+ S A E +R Sbjct: 709 YASIIHDEALRLTRLLNDLLDLSVLESGSVSLNVSRRPLGDVLDHALSS-ALAGAEGPLR 767 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSV 723 + + + D RL Q+F +++NA + + + V + A R + +FI Sbjct: 768 VVRDRNSEAVEIETDVDRLAQVFINLIANAQKYCTAAAPELRINVRVFANRVDVEFI--- 824 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +NG+ IP D + +F +F S + G GLGL+I + + GG + + ++ +G Sbjct: 825 -DNGAGIPADFREMIFEKF-SRVTPERAGGAGLGLAICKEIMRKLGGDIHLLATQKG 879 >gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 464 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L + E+L + DE + F+ +VS+ELR+PL+ I G+T++++ L + QY + I Sbjct: 220 TLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKALDE--KTRDQYYQII 277 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L LVND+LDLA ++ + +V + +L +V + + I I+ Sbjct: 278 ERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKGVSI--IT 335 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D V D RL Q+ +L NA+ ++ + L D I S+++ G IP Sbjct: 336 DFDPSQIVLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTICSIRDEGEGIPP 395 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + + RF V + + G GLGL+I + I+ H G +S S TT+ +P Sbjct: 396 EHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTTVLITLP 454 >gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] Length = 493 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 LE L N T+L + + AERA E KA+ K+ F+ ++S+ELR+PL Sbjct: 133 LELKNEELANHGTLLEEKVIRRTRDAERA----REDAEKANVAKSQFLSNMSHELRTPLN 188 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++G+T +L+ + L K ++ I LL ++NDILD++ ++AG + L Y + Sbjct: 189 GVLGYTQVLQNA--SDLQDKYKGSLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYDEV 246 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704 + ++++ + + K E + + D ++ S +D +L QI ++ NA+ +++ Sbjct: 247 DVLKVVSDTEDILRYKALEKGLSLNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYTAS 306 Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 G V LK + +GD I FS+ + G IP+D VF F + Q G GLGL+I Sbjct: 307 GG-VELKLKK-SGDMIKFSIIDTGIGIPKDKQSHVFEAFRQDEGGRQEGGTGLGLAICVK 364 Query: 764 FINLHGGHVSISSSD 778 + GG + + S + Sbjct: 365 LVEAFGGEIGLESEE 379 >gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt domain-containing protein [Geobacter bemidjiensis Bem] gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 818 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 14/235 (5%) Query: 553 RALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L E E +R+A E K+ F+ +S+E+R+P+ ++G T+LL + L + + Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYL---SKE 219 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q+++VE + S LL ++N+ILD + ++AG M+L L+ L + A Sbjct: 220 QARFVESVRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAARK 279 Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723 I + I G F D RL Q+ +L NA+ F+ +G+ T+ + R +V Sbjct: 280 GIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLVRRPALVRVTV 339 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G I + + +F+ F RR G GLGL+I + L GG + +SS Sbjct: 340 EDTGIGISREAQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGGMELSS 394 >gi|108760619|ref|YP_635056.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|108464499|gb|ABF89684.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 574 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 20/266 (7%) Query: 538 TMLTFVNVTDSVRA----ERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 T+L F VRA E A TE+ R A ++++ F+ ++ELR+PLTN+ Sbjct: 307 TLLLFFITRSQVRARTSAEAANTEQQRLTGEARDAVQVRDDFLSIAAHELRTPLTNLKLQ 366 Query: 591 TDLLKTSKLG--SLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 LL +L+ K +Q V ++ L LV+ +LD++ + G M+LN + L Sbjct: 367 LQLLYRQLRREEALDVEKLAQRVLSCERQTSRLATLVDSLLDVSRLARGRMELNLEPVDL 426 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++L+ E + T+ +++ V S + G + DR RL Q+ + +LSNA+ + G+ Sbjct: 427 DELVREAVRRFETEARTAGVQVTVDSPAPVTGQW--DRMRLEQVLTNLLSNALKYG-HGA 483 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVES 763 V ++ D + V++ G +P + + +F RF VS+ H G G+GLGL I Sbjct: 484 PVDVRVRSDETQAMVEVEDRGIGLPPEDAQRIFGRFERAVSSRHYG---GLGLGLFITRQ 540 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + GGH+S++S+ T +P Sbjct: 541 LVEALGGHISVASTPGQGATFTVALP 566 >gi|52222390|gb|AAU34074.1| ethylene receptor [Solanum lycopersicum] Length = 736 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ ++ + LL+ S+L Sbjct: 313 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV I Sbjct: 373 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 429 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + +S + D +RL+QI ++ NA+ FS +GS + + Sbjct: 430 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSEEGSVSVSAVNAKSES 489 Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 I VK+ GS I P+D K +F +F N + G GL Sbjct: 490 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 549 GLAICKRFVNLMEGHIWIESEGVG 572 >gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1440 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 18/243 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L A + K+ F+ ++S+ELR+PL +++ LL + G L ++ Q+ I Sbjct: 939 LEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGHLTDQEVQFATTIH 998 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S + LL L++DILDL+ ++AG M + T+ L LL+ V + + + ++ + Sbjct: 999 RSGSDLLQLISDILDLSKIEAGRMDVRPKTLPLIKLLDYVHATFRPLTIDRGLGFEIAVE 1058 Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNGDFI-- 720 + +D QRL Q+ +LSNA+ F+ GS V L+ R N D + Sbjct: 1059 KDVPAELYSDEQRLQQVLRNLLSNAVKFTHDGS-VELRVNRVAGMQFAEETLRNADHVIA 1117 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 FSV++ G I + +F F + R+ G GLGLSI + GG + ++ S+ Sbjct: 1118 FSVRDTGIGIAPEKLPMIFEAFQQSEGTTNRKYGGTGLGLSISREIAGMLGGKI-VAESE 1176 Query: 779 EGV 781 GV Sbjct: 1177 PGV 1179 >gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Edwardsiella ictaluri 93-146] gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146] Length = 984 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 131/255 (51%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 470 AICAMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK 529 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + + + +S SS +LL ++NDILD + +++ +K+ V +++ + + Sbjct: 530 ---TLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGN 586 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + ++ + D R+ Q+ S +LSNA+ F+ G +IL+A ++ Sbjct: 587 YLPLVVRKRLTLYCFIEPEVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVND 645 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 F V++ G IP +F+ F QR G GLGL+I E ++L G +++ Sbjct: 646 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 705 Query: 775 SSSDEGVTTINCRIP 789 SS + R+P Sbjct: 706 ESSPGLGSIFTIRLP 720 >gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus degradans 2-40] gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 1653 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 17/260 (6%) Query: 530 IIPLPNAQTMLTFVNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 + PL N T+ + T ++R A++AL + A A K+ F+ +S+E+R+PL Sbjct: 965 LAPLIN--TVGQMIENTRAIRERDNAQQALVKAKNAAELAARTKSEFLAMMSHEIRTPLN 1022 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 ++G +L+K ++L KQ ++ +S+ LLNL+NDILD + VDAG + L Sbjct: 1023 GVLGMLNLVKRTQL---EDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDF 1079 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSS 703 + LL ++ ++A + E + +I KL D RL QI ++ NA+ F+ Sbjct: 1080 NIITLLEDIAHAMAGRALERGNEL-IIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFTQ 1138 Query: 704 KGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G + + N + SV + G I E+ +F+ F R+ G GLGL Sbjct: 1139 NGEVTVTASLTKNTSGFNLNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGL 1198 Query: 759 SIVESFINLHGGHVSISSSD 778 +I + L GG ++I+S + Sbjct: 1199 AICKKLCALMGGDINITSQE 1218 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600 ++T AE + E +A IK F+ ++S+E+R+P+ +IG T L LKT Sbjct: 500 LADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTD--- 556 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L +Q +Y+ I S LL ++NDILD + ++AG + + L+ +L+ V I+ Sbjct: 557 -LTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 K + + D L F+ D RL QI +NA+ F+ +G I L+ RD Sbjct: 616 KATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQ 675 Query: 717 GDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 ++ +VK+ G I + ++FN F R G GLGL+I + L GG V Sbjct: 676 DVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVG 735 Query: 774 ISS 776 + S Sbjct: 736 VES 738 >gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF [Acaryochloris marina MBIC11017] gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF [Acaryochloris marina MBIC11017] Length = 1633 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + +A R+ +E+K+ F+ S+E R+PLT I+G T+L+K G +KQ Y++ I + Sbjct: 1392 REQAEREINELKSRFISMTSHEFRTPLTAILGTTELIKHYGQGWDTNKQHTYLDRIQKNV 1451 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L++D+L L+ D ++ N I L + + + + +I+ Sbjct: 1452 KHMTGLLDDVLVLSKADVNKVEFNPKLINLEVFCSSLVEEFQLNTKRDQ-QIEFEFFWNQ 1510 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +D + L QI S +LSNA+ +S + ++V + + + F +K+ G IPE + Sbjct: 1511 HEVYSDEKILRQILSNLLSNAIKYSPESTSVRFQVNVNEEEATFFIKDQGIGIPEADQQH 1570 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789 +F F + GQ +G GLGL+IV+ + LH G + S +D+G T I ++P Sbjct: 1571 LFESFHRATNVGQIQGTGLGLAIVKKSVELHRGTIDFESIADQGTTFI-VKLP 1622 >gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 602 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 7/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA+ K+ F+ +S+ELRSPL ++GF L++T +Q+ +E I LL L Sbjct: 223 KANLAKSEFLSGMSHELRSPLNAVLGFAQLIETGTPAPTPGQQAS-LEQILRGGWYLLTL 281 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +N+ILDL+ V++G + L+ ++L++ ++ + I + + IR+ S AD Sbjct: 282 INEILDLSLVESGKLSLSMEPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEAD 341 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSV---F 739 R RL Q+ +LSNA+ ++ G +V + + G SV + G + ++ + F Sbjct: 342 RTRLKQVIVNLLSNAIKYNRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPF 401 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 NR A G + G G+GL + + + + GG + + S Sbjct: 402 NRLGQEA--GTQEGTGIGLVVCKRLVEMMGGEIGVHS 436 >gi|89096702|ref|ZP_01169594.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088717|gb|EAR67826.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 458 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 119/237 (50%), Gaps = 5/237 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++ T L+ DE + SF+ +VS++ +SPL NI G+ +LLK L +++ QY+E Sbjct: 225 QSFTTMQRQLQHNDEARKSFISNVSHDFQSPLMNIQGYAELLK---LDVNETERVQYLEI 281 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I+ S L +L +L + ++D + S + + + + + + E I + Sbjct: 282 INDESKRLSHLTKQLLIMTSLDQNAYPMKVSEVRADKQIKQAIRRYQWLIEEKEIEVSY- 340 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + F D + + ++ +++NA+ +SS G ++ + + D + + K+ G+ + E Sbjct: 341 -NLEHCVFKYDAELMTNVWDNLMTNAIKYSSPGDSMWIGLEKRETDLVITFKDTGAGMSE 399 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF ++ G GLGLSIV+ I+LH G +S++S T +P Sbjct: 400 KEMDQIFDRFYRVDSARKKGGTGLGLSIVKQIIDLHDGKISVASKPGEGTVFTITLP 456 >gi|271969947|ref|YP_003344143.1| histidine kinase [Streptosporangium roseum DSM 43021] gi|270513122|gb|ACZ91400.1| Histidine kinase [Streptosporangium roseum DSM 43021] Length = 593 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 15/236 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISA 615 E+ EA RKA V VS+ELR+PL+N+ G+ + + + L+++ + VE I Sbjct: 363 ERMEAQRKA------MVSDVSHELRTPLSNLRGWMEAAQDG-VAELDAELIASLVEEI-- 413 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 +L ++V+D+ +LA DAG ++L+ + + DLL++V + + + + + G Sbjct: 414 --MLLQHIVDDLQELALADAGKLRLHPEPVNVADLLDQVATAHRGRADSAGLTLTADTAG 471 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 G +AD RL Q ++SNA+ ++ G + L+ +G + V + G I + Sbjct: 472 DPG-LLADPVRLRQAVGNLVSNAVHYTPPGGRIALRGRLADGHVLIEVADTGVGIAPEHL 530 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF+RF RR G GLGL+IV + H G VS++S+ R+P Sbjct: 531 PRVFDRFWREEKSRNRRTGGSGLGLAIVRNLAEAHHGTVSVASTPGEGAVFTLRLP 586 >gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 767 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 18/239 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL A AD +K++F+ +S+ELR+PL +IIGFT +L G LN +QS+ + + Sbjct: 506 ALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFTGILLQRLAGPLNDEQSRQLGMV 565 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ LL L+ND+LD++ ++AG +++ + + +++V +I + E R+ + Sbjct: 566 QDSARHLLALINDVLDISKIEAGELRIAHEAFDIAASIDKVA-AIVRPLAERK-RLCLQV 623 Query: 674 DGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVIL----KAARDNGD-------F 719 + G V D +R+ QI +L+NA+ F+ G TV L + A D G Sbjct: 624 ERMTGPLVMTGDMRRVEQIALNLLTNAIKFTEHGRVTVTLELESQHAADAGPERAGRPAV 683 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I + + +F F + + Q G GLGL+I + + L GG +++ S Sbjct: 684 RLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTGLGLTICKRLVALMGGEITVDS 742 >gi|218235425|ref|YP_002366588.1| sensor protein VanS [Bacillus cereus B4264] gi|218163382|gb|ACK63374.1| sensor protein VanS [Bacillus cereus B4264] Length = 291 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 140/274 (51%), Gaps = 14/274 (5%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +SD E I L N + NV R ++L E E +K+ E+KN + ++S++L Sbjct: 19 ISDGNFEIHIPILKNDEIGELAANVN---RMAKSLKESIENEKKSQEMKNEMISNISHDL 75 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+T++IG+ DLL +KL S + QYV + S L N V+D+L+ ++ ++L Sbjct: 76 RTPVTSLIGYADLL-GNKLHSNGEECEQYVSILKRKSYELKNQVDDLLEYCQINYREIEL 134 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + + + L+ ++ ++ + N+ + SD L V D ++++F ++ N++ Sbjct: 135 HKDEVDMKALIEQIMIDFVPQLDDANMSFYIKSDEVLHVEV-DVTLIVRLFENVIGNSIM 193 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVG 755 + G ++++ + +KN G IP++ +F +F ++H G G G Sbjct: 194 YGRDGKGIVIEIFNKTMNVEVEIKNFGQCIPKEDLPYIFEKFYRSEKSRSSHTG---GKG 250 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +GL+I +S LH G +++ S+D+ T ++P Sbjct: 251 IGLAISKSIAELHQGDITVRSNDKE-TVFTVKLP 283 >gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces bingchenggensis BCW-1] Length = 1154 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 10/236 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616 + EAL + D K +F +VS+E R+PLT ++G L ++ + +E S Sbjct: 333 RAEALAELDRAKTTFFSNVSHEFRTPLTLLLGPVQQALSVED----RPERRRQLELAERS 388 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL LVN +LD++ +AG ++ ++ + L+ + E+ + + ++V Sbjct: 389 ALRLLKLVNTLLDVSRAEAGRLRGHFEPVDLSRVTAELAAVFRSAFDLAGLSLRVECPPL 448 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 G DR+ +I +LSNA+ F+ + G TV L AA D +V + G+ +P + Sbjct: 449 PGPVHVDREMWEKIVLNLLSNALKFTFAGGVTVRLAAAGDRAR--LTVADTGTGVPPEEL 506 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF V A G G+GL++V+ + LH G VS+SS +T +P Sbjct: 507 PYLFDRFHQVRGARSRSHEGSGIGLALVKDLVELHAGTVSVSSRPGEGSTFTVEVP 562 >gi|284920828|emb|CBG33891.1| Two-component sensor kinase and response regulator [Escherichia coli 042] Length = 904 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGVLSATSTPEVGSCFCLRLP 651 >gi|260428938|ref|ZP_05782915.1| PAS domain containing protein [Citreicella sp. SE45] gi|260419561|gb|EEX12814.1| PAS domain containing protein [Citreicella sp. SE45] Length = 463 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 27/348 (7%) Query: 206 VWHRDQAGDILWANISYKKNTETEGI--------VFQKAIGESRKLFKEEIKKRMISSSA 257 +W D ++W+N + G+ IGE + + I R +S A Sbjct: 113 IWQTDADRRVVWSNAGFADLCAQAGLPDHSVPPFAILPDIGEEYHVTRSSIGSRAENSQA 172 Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317 + E +SY++ + ++ A+ + EI + L I +L + Sbjct: 173 ----WFEV---------QSYRLPDGWLHYAQSIDAV-IHAEIAQRNFLQTLTRIFAHLPI 218 Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377 A+A+FD++R L N + V+L + FL+ P+ + LR +PE ++ W++ Sbjct: 219 ALAVFDRDRRLVLFNPALVDLTGLAADFLSARPNLLSFFDMLREKRMMPEPKDYGGWRDT 278 Query: 378 IFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435 + V ++ T + +TW+L +G T V +P GG ++FE++T ++ L ++ ++V Sbjct: 279 LRDVIAAASTDHYIETWNLASGLTYRVTGRPHPDGGVAFLFEDITAEISLTRRFRQEIEV 338 Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495 +D L + VAVF G + N A+R +W + + T I + + + S Sbjct: 339 TQAVLDSLDDAVAVFSQLGVLSFCNAAYRDMWGGDPDGSLADTDIADASRLWQAGCDPSP 398 Query: 496 GW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 W DL ++T D R L L PL TM+ F Sbjct: 399 IWPDLRDFVLTLRD--RAGWDAELTRQDGQTLTLRAEPLVGGSTMVRF 444 >gi|255020489|ref|ZP_05292554.1| Putative sensor-like histidine kinase YfhK [Acidithiobacillus caldus ATCC 51756] gi|254970099|gb|EET27596.1| Putative sensor-like histidine kinase YfhK [Acidithiobacillus caldus ATCC 51756] Length = 499 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 8/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F++ +S+EL++PLT I +LL+ L+ +Q + V + +S L L+ D+L Sbjct: 251 KIHFLRQLSHELKTPLTAIREGAELLQEDLGHELDPEQREIVHIVRDNSLRLQRLIEDLL 310 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQR 686 + + + + L+ LL E+ QS + N+R+ D +L + R R Sbjct: 311 RFSIAEGPVAAGMQQDVRLDALLEELTQSYKPVLRSKNLRL----DMELAPLLVAGHRDR 366 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L I +LSNA+ FS +G+T+ L+ +GD + V + G + + + +F+ + Sbjct: 367 LRTICDNLLSNAVKFSPQGTTIRLRLQPVDGDAVLDVMDAGPGVTPEEREKIFDILYRGS 426 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GQ + G GLGL+I ++ +GG + I SD CR+P Sbjct: 427 ASGQGKVEGSGLGLAIAREYVTSYGGSLEIVDSDGPGAHFRCRLP 471 >gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 685 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 132/246 (53%), Gaps = 11/246 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E A+ +K+ F+ ++S+E+R+P+ IIGFTDLL+ S + N YV+ + Sbjct: 217 LKQAKEEADSANNMKSEFLANMSHEIRTPMNAIIGFTDLLEKSVKDTTN---QNYVKSVQ 273 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 SS ILL ++NDILDL+ V+AG +++ + + + +E+K K +++KV I Sbjct: 274 DSSKILLAIINDILDLSKVEAGKLEIQHIATDIRTIGDEIKNVFYHKAKSKALKLKVNIE 333 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNNGS 728 + S + D R Q+ ++SNA+ F+ +G + I + + + I V+++G Sbjct: 334 ESVPSSLMLDEVRTRQVLLNLISNAIKFTPEGFVNLNIFSSLNQDTNLINLTIEVEDSGI 393 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 + + +F F + ++ + G GLGL+I + + L GG +S+ SS + +T Sbjct: 394 GMDKSEQDKMFEAFAQHTNQSNKEYGGTGLGLAITKKLVTLMGGDISVKSSKDNGSTFRI 453 Query: 787 RIPSKE 792 +P+ E Sbjct: 454 ILPNIE 459 >gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] Length = 843 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 122/239 (51%), Gaps = 9/239 (3%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 TD + A+ E KA + K F+ ++S+++R+P+ IIG T L+K K Sbjct: 438 TDEHQTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAIIGITTLMKNEL--HQPEK 495 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 ++++ + +S +LL ++NDILD++ +++G LN I L +++++ I + + Sbjct: 496 LAEHLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINLPRQISQLESVIRQQAGQR 555 Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFI 720 V + + + + D RL Q+ ILSNA+ ++ G + L+ + Sbjct: 556 RQTFTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGHIRLEIDELTHTEHYTKYR 615 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V++NG + E+ K++F F G + G GLG++I +S ++L GG + + S+ Sbjct: 616 FVVQDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLGMAITKSIVDLMGGTIHVEST 674 >gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] Length = 904 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 25/252 (9%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE- 611 AL E +A A+ K +F+ H+S+++R+P+ I+GFTD+ ++ K + VE Sbjct: 514 EALKEAQDA-NAANIAKTTFLNHMSHDIRTPMNAIVGFTDI-------AMKRKPDKEVED 565 Query: 612 ---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIV--LNDLLNEVKQSIATKMHENN 666 I SS L+ L+ND+LD++ +++G KL Y ++ L D+ + V M + Sbjct: 566 CLKKIRQSSEYLMTLINDVLDISRIESG--KLEYKPVLVDLRDMTDTVLSIARGYMENRD 623 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFI- 720 + V + +V AD R+ ++ I+SNA+ F+ G T+ A +D I Sbjct: 624 LNFSVSREELKNPYVMADELRIREVLLNIISNAVKFTKDGGTISFVAENCPGKDEHHLIV 683 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 + + + G + E+ +F+ F +N R +G GLG++I + +++L GG + +SS Sbjct: 684 RYHISDTGIGMSEEFQTRIFDEFSQENNGARTSYKGTGLGMAIAKQYVDLMGGKIEVSSR 743 Query: 778 DEGVTTINCRIP 789 + IP Sbjct: 744 QGVGSAFTVEIP 755 >gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 981 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 14/222 (6%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622 +A + K FV +S+ELR+P+ IIG ++ LKT L KQ +Y+ I +S+ LL Sbjct: 264 QASKAKGDFVASMSHELRTPMNAIIGMIEIALKTE----LTVKQREYLTIIRSSARSLLG 319 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681 +VNDILD++ ++A M+L + ++L EV ++ + + + + + + V Sbjct: 320 VVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLDIEADVPAVLV 379 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL Q+ +++NA F+ +G I A ++D FSV++ G I E+ Sbjct: 380 GDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRSQDVVQLEFSVRDTGLGIGEEARNR 439 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 +F+ F S A R G GLGLSI + L GG ++++S Sbjct: 440 LFDTF-SQAEGSTARLFGGSGLGLSIARELVRLMGGTITVAS 480 >gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1013 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 124/259 (47%), Gaps = 15/259 (5%) Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 PL + ML V ++TD RAE AL + +A +K+ F+ +S+E+R+P+ Sbjct: 442 FPLLDRDRMLYAVGGVATDITDRKRAEEALALARDQAMEAARLKSEFLATMSHEIRTPMN 501 Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645 +IG T+LL S +L +Q + E + S LL ++NDILD + ++AG + L Sbjct: 502 GVIGMTNLLLES---ALTPEQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDF 558 Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704 ++++ IA + + + + + D + S V D RL Q+ +L NA+ F+ + Sbjct: 559 DFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDR 618 Query: 705 GSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758 G V+ + A+D + V + G I + +F F RR G GLGL Sbjct: 619 GEVVLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGL 678 Query: 759 SIVESFINLHGGHVSISSS 777 +I + L G + + S+ Sbjct: 679 AICKRLTELMQGEIGMESA 697 >gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 830 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL A A+E K+ F+ +S+ELR+P+ ++G LL +G L + S+YVE I Sbjct: 294 ALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLL--DMG-LAPEPSEYVETI 350 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 +S LL ++NDILD + ++AG+ +L L + E +A + + + + I Sbjct: 351 RSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKRLELALRI 410 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKN 725 ++ + D RL Q+ +LSNA+ F+ G VI A D SV++ Sbjct: 411 AEDVPWTVRGDITRLRQVIVNLLSNAIKFTDVGEVVIAIACAPKIDCQRAGVRLHLSVRD 470 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G IP ++ KS+F F R+ G GLGL+I + L G + + S Sbjct: 471 TGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRIWVES 523 >gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 811 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 120/247 (48%), Gaps = 6/247 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++++ +AE+ L N L ++++ F S++L+ PL I FTDLL G L+ Sbjct: 569 DISERKQAEQELQRINSELIRSNQELGHFAYVASHDLQEPLRKIGSFTDLLADRYQGQLD 628 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Y+ YI+ + + L++D+L+ + V G +L L+ +L +VK + + Sbjct: 629 ETADRYIRYITDGAMRMQGLIDDLLNYSRV--GRAELKVQPTALSSILEKVKSDLEKVIE 686 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722 + + I + S L + D + Q+F ++SNA+ + + + ++A +D + S Sbjct: 687 KRQVEIIIDS---LPTVAVDPVLMGQVFQNLISNAIKYCQADRPRIYIRATQDQKFWTIS 743 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 V++NG I +F F HR + G G+GL+I + + HGG + + S + Sbjct: 744 VQDNGIGINPQFTDRIFVIFQRLHHREEYSGTGIGLAICKKLVERHGGQIWVDSEEGKGA 803 Query: 783 TINCRIP 789 + +P Sbjct: 804 NFSFTLP 810 >gi|153834480|ref|ZP_01987147.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi HY01] gi|148869116|gb|EDL68152.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi HY01] Length = 786 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L S+ L +Q ++ Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L + + D + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L + D RL Q+ ++SNAM F+ +G V+ +A D+ I V++ Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDYATIIMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IP++ +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499 Query: 783 ---TINCRIP 789 T++ +P Sbjct: 500 STFTVSIHVP 509 >gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] Length = 470 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 7/245 (2%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609 A L E E + + K+ F+ +VS+ELR+PL +IIGF++++K +G++ N +Y Sbjct: 217 ANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAESMGAIENVHYKEY 276 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I + LL+L+NDILD + +A + + + L +++ I + E +R+ Sbjct: 277 INDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNMILPRAEEAKVRL 336 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNG 727 + + VAD +R+ Q+ +LSN++ F+ + V L D N + V +NG Sbjct: 337 EQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLENSMIVIEVIDNG 396 Query: 728 SSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 I +D+ K SVF + V + H + G GLGL + + + L G I S T + Sbjct: 397 IGIAQQDLYKVMSVFGQ-VDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTIV 455 Query: 785 NCRIP 789 P Sbjct: 456 TLMFP 460 >gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97] Length = 2408 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 21/250 (8%) Query: 550 RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 +A+ A E N ++ A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ Sbjct: 1864 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1920 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YVE I + LL L+NDILD + ++AG MK++ I L + EV +++ E Sbjct: 1921 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1980 Query: 667 IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 + + I L + D RL QIF +LSN+ F+ GS + ++ Sbjct: 1981 LETVEDLDSIDPDLL--VMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774 V + G I E+ +F F S A R G GLGLSI ++ I ++ GG + + Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2097 Query: 775 SSSDEGVTTI 784 S + TT+ Sbjct: 2098 QSKEGEGTTV 2107 >gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 502 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 15/236 (6%) Query: 553 RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L NE L+ A D+ K+ F+ VS+ELR+PLT+I G ++LK+ K+ L+ Sbjct: 243 RRLKHNNEQLKHAQIRAMASDKSKSEFISTVSHELRTPLTSIKGSLEMLKSGKIIDLSGA 302 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHE 664 + V + ++ IL LVND+LD +D G +++ T +D++ VK I T K ++ Sbjct: 303 AERLVGMAAKNANILNLLVNDLLDFERIDTGNLEV---TKRPSDIVGIVKDEIETMKSYD 359 Query: 665 NNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 ++ G G VA D R+ QI +LSNA+ FS KG +++ ++ Sbjct: 360 TEQEVEYFYSGVEGPLVAHVDPDRIAQIVRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVD 419 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V ++G I + C +F++F V +++ + RG GLGL+I + + HGG + ++S Sbjct: 420 VADSGCGISKVDCVRIFDKFTQVDSSNTRKHRGTGLGLAISKGIVEAHGGDIGVTS 475 >gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 716 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 50/266 (18%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+ELR+PL +++ LL ++K G+L KQ++Y + I ++ + LL L+N+ILDL+ ++A Sbjct: 1 MSHELRTPLNSLLILAQLLASNKEGNLTDKQTEYAQTIHSAGSDLLTLINEILDLSKIEA 60 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694 G +++ + L DL V Q E + + L + D QRL QI + + Sbjct: 61 GKIEVQVEKVSLADLQEAVDQKFRHVAEEKKLAFPISMADDLSPVINTDGQRLKQILNNL 120 Query: 695 LSNAMDFSSKGSTVI-----------LKAARDNG-----------DFI------------ 720 LSNA F+S+G + L A G FI Sbjct: 121 LSNAFKFTSQGEVRLEIQPTGPHPSPLPAGEGTGPHPSPLRENLSPFILENSQGHPPLPL 180 Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 FSV + G IP++ + +F F RR G GLGLSI Sbjct: 181 GEGRGEGHQKTIAFSVTDTGVGIPKNKQQVIFEAFQQADGTTSRRFGGTGLGLSISRQLA 240 Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791 L GG + + S + +T +P K Sbjct: 241 RLLGGELHLQSEEGKGSTFTLYLPEK 266 >gi|153808319|ref|ZP_01960987.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185] gi|149129222|gb|EDM20438.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185] Length = 482 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 118/215 (54%), Gaps = 2/215 (0%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D K +F+ +S+EL++P+ I+ LL+ ++G+LN +Q Q + I +S LL Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLG 314 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 + ++L++ V+AG ++L +L+ ++ + + NI+I+V + K+G Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D +++ + + +LSNA+ +S + V++ A +++ V++ G I KS+F+R Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKQEDNIIELYVQDFGKGIDPRYHKSIFDR 434 Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + + +G GLGLSI F+ HGG +++ S Sbjct: 435 YF-RVPGTKVQGSGLGLSISRDFVEAHGGTLTVES 468 >gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1314 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 58/381 (15%) Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL-------- 466 M E T Q+ E + V +D EG+ V P G NPAF S+ Sbjct: 954 MVEERTAQLRAEKERTQAV------LDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVEL 1007 Query: 467 -----WK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520 W+ +EN + +N +R+ E GW A Sbjct: 1008 QVGSPWRWLDENEGNLFKTYQNREILSTRWEKEIHGWRRNGAPF---------------- 1051 Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 D++L ++ P+ + NV V + +T L++ D +K+ FV +VS+EL Sbjct: 1052 --DAIL--TLTPVHDEDG-----NVIKHVGTLQDITR----LKELDRLKSQFVSNVSHEL 1098 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PLT+I + + L T+ + ++Y+ + + L +V D+L ++ +D G ++ Sbjct: 1099 RTPLTSIKLYAEQLPTAS----AERSARYLAALQRETARLEAMVEDLLTISRLDLGKTRI 1154 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 S + L + ++ + H + + D L D + ++QI + +L+NA++ Sbjct: 1155 QISALPLAPFVQQIVEDRRMLAHSRGLTLHFQQDKHLPPVAGDERFVMQIVTNLLTNAIN 1214 Query: 701 FSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVG 755 ++ G + + D G ++++ G IP + +F RF S + Q G G Sbjct: 1215 YTPAGRNIFISVRHDPQEAGFLRLTIEDEGVGIPPEEMPHLFERFFRGSAGRKLQVPGTG 1274 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+IV+ + G + I S Sbjct: 1275 LGLAIVKEMVERLNGKIHIES 1295 >gi|298244388|ref|ZP_06968194.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551869|gb|EFH85734.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1349 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR+PL + T L++ + + + + Sbjct: 1115 NSARKELEQRKDDFISMASHELRNPLAALKMQTQLVQKRLERQSLHEAATALSRVEGPVK 1174 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L L+ ++LD++ + AG ++ T+ L+ LL+EV ++ + I + Sbjct: 1175 QLERLIGELLDVSKIQAGKLEYVRETVDLDALLHEVADTM---QQLSTTHIIAVRGAVPH 1231 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 S V D+ RL Q+F ++SNA+ +S TV + I V ++G IP + C + Sbjct: 1232 SLVGDKDRLGQVFINLISNAIKYSPGAETVEMDLDASPEAAIIGVHDHGLGIPREQCDKI 1291 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F RF A Q+ G+G+GL IV + HGG +++ S+ +T +P Sbjct: 1292 FERFYRAAGPKQKAIPGLGMGLYIVAEIVKRHGGTITVDSTVGEGSTFTVTLP 1344 >gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O103:H2 str. 12009] gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory system with ArcA [Escherichia coli O103:H2 str. 12009] Length = 778 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + L +++ A + + + Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLCF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL QI ++SNA+ F+ +G V ++ D GD + F V+++G Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782 IP+D +F + V ++H G+ G G+GL++ GG ++++S +G T Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499 Query: 783 TINCRIPS 790 T+ PS Sbjct: 500 TLTIHAPS 507 >gi|229127230|ref|ZP_04256227.1| hypothetical protein bcere0015_16840 [Bacillus cereus BDRD-Cer4] gi|228656346|gb|EEL12187.1| hypothetical protein bcere0015_16840 [Bacillus cereus BDRD-Cer4] Length = 329 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 130/245 (53%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 83 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 141 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ + + L+ ++ ++ + N+ Sbjct: 142 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 201 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + SD L V D ++++F ++ N++ + G + ++ + + +KN G Sbjct: 202 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 260 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S LH G +++ S+D+ T Sbjct: 261 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 316 Query: 785 NCRIP 789 ++P Sbjct: 317 TVKLP 321 >gi|153854057|ref|ZP_01995390.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814] gi|149753439|gb|EDM63370.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814] Length = 470 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 124/233 (53%), Gaps = 7/233 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 +L + LR ++ + FV +VS++ RSPLT+I G+ + + + +Y++ I Sbjct: 231 SLNYMSSQLRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAMTDGTIPP--ELHEKYLKII 288 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L +L D+L L D + LN +++++ V S + I I+++ Sbjct: 289 LFETERLTDLTQDLLTLNEFDTNHLLLNREVFDIHEMIKHVAASFEGVCTQKKISIELVF 348 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPE 732 K + AD++++ Q+ +L NA+ FS S V ++ D G+ ++ SVK+NG IP Sbjct: 349 ATKHLNVNADKRKIQQVLYNLLDNAIKFSDPNSIVTIETT-DRGEKVYTSVKDNGMGIPR 407 Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 ++ RF S+ RG+ ++G GLGL+IV+ I HG ++++ S+ EGV T Sbjct: 408 SALGKIWERFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENITVVST-EGVGT 459 >gi|126651422|ref|ZP_01723626.1| sensor histidine kinase [Bacillus sp. B14905] gi|126591675|gb|EAZ85771.1| sensor histidine kinase [Bacillus sp. B14905] Length = 466 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 5/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ +++ELR+P+T I G+TD+L L S+ +Q +Y+ I + L L+ D+ Sbjct: 234 RKEFLSSIAHELRTPITFIKGYTDILYKRDL-SVQDRQ-KYLAIILEETNRLSRLIKDLF 291 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA +D + + L +K ++ E +I V + L + AD RL Sbjct: 292 DLAKMDENSFVIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFDVCCEKGL-TLWADEARLE 350 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI +L+NA+ + +G T + + NG +++ G IP +F RF V + Sbjct: 351 QIIINLLNNALTYCGQGDTTTVDVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKS 410 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV+ + HGG V++ S Sbjct: 411 RSRALGGTGLGLAIVKELVQAHGGEVTVKS 440 >gi|22095654|sp|O49187|ETR2_SOLLC RecName: Full=Ethylene receptor 2; Short=LeETR2 gi|2852993|gb|AAC02214.1| ethylene receptor homolog [Solanum lycopersicum] Length = 736 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ ++ + LL+ S+L Sbjct: 313 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 372 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV I Sbjct: 373 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 429 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + +S + D +RL+QI ++ NA+ FS +GS + + Sbjct: 430 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSKEGSVSVSAVNAKSES 489 Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 I VK+ GS I P+D K +F +F N + G GL Sbjct: 490 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 548 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 549 GLAICKRFVNLMEGHIWIESEGVG 572 >gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 480 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 22/275 (8%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-----ERALTEKNEALRKA 565 ++SLQ L+L+S S L + Q L N VR + L NEAL Sbjct: 203 KRSLQ-PLQLMSQLTESISADDLGDVQIQLD--NAPTEVRELAQTFDEMLVRLNEAL--- 256 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLV 624 E + FV +VS+ELR+PLT + G+ T + G+ L+ Q + +E S+ + + ++ Sbjct: 257 -ENQRQFVSNVSHELRTPLTLVSGYVQ--STLRRGANLSPPQREALEIASSEADRTVQML 313 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 D+LDLA D+G + N + VL++L+ EV + +A + + I+++ I K G +V D Sbjct: 314 QDLLDLARADSGHIHFNLESFVLDELVEEVAE-MARQYTKRVIKVECI---KPGIWVKGD 369 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL Q+ ++ NA+ +SS V +K + +G V + G IP +F+RF Sbjct: 370 INRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVDGRGRIEVCDRGIGIPLKQQARIFDRFY 429 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V G GLGLSIV++ + GG V + S Sbjct: 430 RVDETRTRSTGGAGLGLSIVKTLVEGMGGSVKVRS 464 >gi|162450584|ref|YP_001612951.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161166|emb|CAN92471.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 414 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 20/239 (8%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS----LNSKQSQY 609 L KN L + +E KN FV +++LR+PL I+G++D +L + + G L + Sbjct: 155 LAAKNAELVRLNEEKNRFVGMAAHDLRNPLGVILGYSDFMLMSHRRGEPSSLLKEGGVEI 214 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HENN 666 V I +SS +L+L+ND+LD++ ++ G + L+ + D++ V+ ++A M + N Sbjct: 215 VNMIRSSSKFMLSLINDLLDVSMIELGKLNLDRKS---TDIVQLVESNVALNMVLAGQKN 271 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDF 719 +++ V SD + D +L Q+ + ++SNA+ +S G+T+ ++ A + Sbjct: 272 MKLVVESDEGVPRVEVDAHKLEQVLNNLISNAIHYSPPGTTIRVRVHGGRGEDAGGGAEV 331 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I SVK+ G I + +F F G R GLGL+I + + HGG + + S Sbjct: 332 ILSVKDEGPGIAAEDLGKLFRPFGRARTVSTGGERSTGLGLAIAQRVVEGHGGRIWVES 390 >gi|157148541|ref|YP_001455860.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895] gi|157085746|gb|ABV15424.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895] Length = 1060 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 7/243 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R++R L + ++A+E K F+ H+S+E+R+P++ I+GF +LL+ S + + Sbjct: 567 RSQRLLEAERNKAQQANEEKREFLSHMSHEIRTPVSAIMGFLELLQLSP-ARFSPEDKAS 625 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ + +S LL L+ +ILDL +++G++ + ++ L+ E + + I + Sbjct: 626 VDQAAQASRSLLKLIGEILDLEKIESGLLDTVPQWVNVDALIKEKMTLFSALAAQKGIDL 685 Query: 670 KVISDGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + D +L A D Q L Q+ + ++ NA+ F+ +G V + A + N SV ++ Sbjct: 686 RY--DSRLDPQEAMHLDPQLLGQVLTNLIGNAVKFTQQGH-VRISATKSNAMLALSVSDS 742 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G I + +F F RG GLGL+I + + GG +++ S TT+ Sbjct: 743 GPGISTEEQNRLFTAFSQGKAGKHHRGSGLGLAISRALMTQMGGTIALQSEINRGTTLTL 802 Query: 787 RIP 789 +P Sbjct: 803 NLP 805 >gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 851 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 171/366 (46%), Gaps = 52/366 (14%) Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAA 485 +V+ G I+ + ++FGPD + + L++ EE+R P +R Sbjct: 239 VVRPDGTIIETNTAARSMFGPDNTETGKSNIYGVLYRQEEDRTLTAISDEPLGDVRE--- 295 Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFV 543 E+D L A + G+L LS +V S+ + + F+ Sbjct: 296 ------GEADSTPLVA----------RRQDGSLAAVELSANVAARSV-----DEVWVCFI 334 Query: 544 -NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++D + AE + + ++ K F+ +S+E+R+PL I+G DL+ ++ L Sbjct: 335 RDISDRLAAEAEVQAARDKALSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDSTP---L 391 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIAT 660 + +Q++Y + + +S +LLN +ND LD+ A + L + + L+ ++ Q Sbjct: 392 SPEQTRYSDIMKSSGQVLLNQINDALDITRSSAEPLPLVETVFDVEQLIEDIATSQGAVA 451 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716 + H N I + V + +G+ + DR R+ Q+ ++SNA+ F+ G + ++AAR Sbjct: 452 EAHGNTIDLHV-QNAPVGAVLGDRDRVQQVLLNLVSNAIKFTRNGR-ISIEAARVGLHGK 509 Query: 717 GDFIFSVK--NNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGG 770 D IF ++ + G I ED + +F+ FV S+ R + G GLGL I + + GG Sbjct: 510 HDNIFEIQVSDTGIGIAEDDVERIFDDFVRVISSDGERTE--GTGLGLGIARNLVLQMGG 567 Query: 771 HVSISS 776 + + S Sbjct: 568 DIGVES 573 >gi|1272246|gb|AAB39386.1| ethylene receptor [Solanum lycopersicum] Length = 706 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ ++ + LL+ S+L Sbjct: 283 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 342 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ L EV I Sbjct: 343 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 399 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + + + +S + D +RL+QI ++ NA+ FS +GS + + Sbjct: 400 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSEEGSVSVSAVNAKSES 459 Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 I VK+ GS I P+D K +F +F N + G GL Sbjct: 460 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 518 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ I S G Sbjct: 519 GLAICKRFVNLMEGHIWIESEGVG 542 >gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 1090 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 23/277 (8%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586 P + + + V D R E+ L E+ AL + A++ K+ F +S+++R+P+ Sbjct: 534 PYSDEVLCILLLKVLDDQRTEKMLQEQVLRNALASAKAANQAKSDFFSRMSHDIRTPMNA 593 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNY 642 IIG S +G L + + V I SS LL+L+NDILD++ +++G M L Sbjct: 594 IIGM------SAIGQLKMNEPERVRECFSKIDVSSRYLLSLINDILDMSKIESGKMILTN 647 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDF 701 + + L++++ I + EN + ++ G L F + D R+ QI +LSNA+ F Sbjct: 648 ARFDFSGLISQINTIIYPQALENRLSCRIHHVGVLERFYIGDALRINQILMNLLSNALKF 707 Query: 702 SSKGSTVIL---KAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754 + G + L ++ R NG ++ F + + G + + K ++ F R G Sbjct: 708 TPAGGKIDLDIGESRRANGFAYVQFRISDTGIGMSPEFMKRLYVPFEQETTDIARNKIGS 767 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 GLGLSIV S + L GG + + S T +P K Sbjct: 768 GLGLSIVHSMVQLMGGTIEVQSEKNRGTVFTVTLPLK 804 >gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42] gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42] Length = 709 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 295 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 354 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 355 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVENS 414 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 415 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWITI 474 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 475 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 534 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 535 EGSTFTVYIPN 545 >gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 938 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 26/253 (10%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 VRAERA ++ K+ F+ +S+ELR+P+ +IG DLL SK N + Sbjct: 396 VRAERA-----------NQAKSEFLSMMSHELRTPMNAVIGSLDLLTLSKQ---NPESMS 441 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E + S+T L+ ++NDILD+ +++G M+L + ++++ V Q H+ + Sbjct: 442 LIETATTSATNLIYILNDILDINKIESGKMQLEQRDFSITEVIDNVVQVFLPLAHKKRLN 501 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS-----SKGSTVILKAARDNGDFI-- 720 + + D ++ + D ++ QI +L NA+ F+ G ++ ++ D I Sbjct: 502 LHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFTHTVEGKPGEIRLITNISEHNDIIYK 561 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 FS+ +NG I ++ K +F F+ R+ G GLGL+I + ++ GG + ++S Sbjct: 562 ISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKYGGTGLGLAISGNLTSMMGGEIKLNS 621 Query: 777 SDEGVTTINCRIP 789 + E +T +P Sbjct: 622 TPEQGSTFTVVLP 634 >gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] Length = 1424 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 134/258 (51%), Gaps = 14/258 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++T+ + + LT+ ++ A E K+ F+ ++S+E+R+PL I+ +L + ++G Sbjct: 775 VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 834 Query: 601 SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 + Q + +S S+ LL++VNDILD + ++AG + L+Y L+ L V Q A Sbjct: 835 ----HEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 890 Query: 660 TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD 715 + H ++ K D +L S + D RL Q+ + +LSNA+ F+ G+ T L + D Sbjct: 891 RQAHAKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFTEHGTVGLTTKLVSQND 950 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771 + F V ++G I E+ +++F FV A G R G GLGL+I + I GG Sbjct: 951 GQQQVCFEVFDSGIGISEEHIRNLFRPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGT 1009 Query: 772 VSISSSDEGVTTINCRIP 789 +++ S +T +P Sbjct: 1010 LNVISKVNLGSTFTISVP 1027 >gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum SCRI1043] gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium atrosepticum SCRI1043] Length = 933 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L+ L++V +A HE + + + I + F Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I R +++ G I E Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504 >gi|332306753|ref|YP_004434604.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174082|gb|AEE23336.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 661 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 4/240 (1%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++D AE L+ N+ L AD K+ F+ + +ELR+PL I ++++ + Sbjct: 262 IMDISDRKAAEEQLSALNQQLSIADRRKDEFLATLGHELRNPLAPICNVLEIMRAKETDD 321 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S+ + I + L +LV+D+L+ + + G + L I ++D + +S+ Sbjct: 322 TFMHWSR--DMIERHVSQLTHLVDDLLEASRISQGRLSLRTEPINIDDAVQNAVESVQDL 379 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 M + + V AD R+ QI +L+NA ++ KG ++L + + I Sbjct: 380 MKSSEHNLTVNKPQHPIIIDADATRITQIIVNLLTNAGKYTPKGGDILLNVFKQENEAIV 439 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G IP + +VFN F ++ A + G+G+GLS+V + LHGG++ S E Sbjct: 440 SVKDTGIGIPAEQLTNVFNMFSQLTPALDRAQGGLGIGLSLVHGLVKLHGGNIVALSDGE 499 >gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] Length = 2059 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 10/224 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E A K+ F+ ++S+E+R+P+ IIG TDL ++L ++Q +Y+ + +S+ Sbjct: 1347 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLTMVQSSAGS 1403 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 LL ++NDILD + ++AG ++L+ S L L + +++A + H+ + + I+ Sbjct: 1404 LLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPD 1463 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFI--FSVKNNGSSIPEDM 734 S V D RL QI + ++ NA+ F+S+G +++K + +G+ + FSV ++G IP++ Sbjct: 1464 SLVGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKYIDGEVLLRFSVIDSGIGIPKEK 1523 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL+I + L G + + S Sbjct: 1524 LHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLRVVS 1567 >gi|298251422|ref|ZP_06975225.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546014|gb|EFH79882.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 485 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 17/241 (7%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELRSPLT + L+T + K SQ+ E +A S Sbjct: 251 NSARKELEQRKDDFINMASHELRSPLTVV-----KLQTQLVHKRLEKHSQH-EAATALSR 304 Query: 619 I------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + L L+ ++LD++ + AG +K + L+ LL E+ ++ + I ++ Sbjct: 305 VEMPIKQLERLIAELLDVSQIQAGRLKYIRERVDLDKLLREIADTMQRMSPSHTIAVR-- 362 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S + DR RL Q+F+ +LSNA+ +S +TV ++ + V+++G IP Sbjct: 363 -GAVQTSVIGDRDRLRQVFTNLLSNAIKYSPDATTVEVELSSSEEAVAIRVQDHGLGIPR 421 Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + K +F RF A G+G+GL IV I HGG +++ S +T +P Sbjct: 422 EQHKKIFERFYRAAGLSHETIPGLGMGLYIVAEIIKGHGGTITVESDIGKGSTFTVTLPR 481 Query: 791 K 791 + Sbjct: 482 R 482 >gi|209694498|ref|YP_002262426.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] gi|208008449|emb|CAQ78615.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] Length = 745 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 9/247 (3%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + A+ + A K +K+ F+ +S+E+R+PL I+G + LLK ++L KQ Sbjct: 353 IEAKEESHKAQAAAEKLTLVKSDFLARMSHEIRTPLNGILGISGLLKQAQLPLEQKKQ-- 410 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I LL ++NDILD + ++ + +N+ VL+D+L+ + E NI Sbjct: 411 -IQIIHQGGEHLLAVLNDILDFSQIEQDKLNINFEEFVLDDVLDTINAIYTPLCMEKNIT 469 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI--FSVK 724 + ++ + D+ RL QI +LSN + F+ G T+ L NG F V+ Sbjct: 470 FNLNNNIDNNVILYTDKVRLTQILFNLLSNGVKFTEIGQVTLSLNLESKNGQIFLCFDVE 529 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + SVF+ F+ G R+ G GLGL+IV+ ++L G +++ SS T Sbjct: 530 DTGVGIDIENQASVFDPFIQVESTGTRKFGGSGLGLAIVKQLLHLLNGSITVVSSPGLGT 589 Query: 783 TINCRIP 789 + R+P Sbjct: 590 SFTIRLP 596 >gi|167738963|ref|ZP_02411737.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 14] Length = 341 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + V D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] Length = 528 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 5/240 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L E L A+ K+ F+ ++S+ELR+PL IIGF+D++ G L +++ Y + I Sbjct: 269 LQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMVNQLFGKLGDARYEDYAKDI 328 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S+ L+ ++ DILD ++ G ++L +T+ ++ LL + + I+ +H I+++ + Sbjct: 329 HYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDALRIISPSIHAQRIKLEQQA 388 Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G D R+ QI +LSNA+ F+ G + + +G I ++ + G I E Sbjct: 389 LPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVKIRDGIEI-TITDTGIGIDE 447 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + V F H R+ G GLGLS+ ++ + H G +++SS T + P+ Sbjct: 448 ADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQGKLTLSSRLGEGTAVTIYFPA 507 >gi|15894190|ref|NP_347539.1| sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15023801|gb|AAK78879.1|AE007605_12 Sensory transduction histidine kinase [Clostridium acetobutylicum ATCC 824] gi|325508318|gb|ADZ19954.1| Sensory transduction histidine kinase [Clostridium acetobutylicum EA 2018] Length = 683 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 553 RALTEK--NEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 R +TEK NEA RK D+++ F ++S+ELR+PL + L++ + Sbjct: 406 RDMTEKKKNEANRKKLEQTLYYDKVRKEFFSNLSHELRTPLNILASAMQLVRLNMDNDNK 465 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Y++ ++ + L ++++++D+ +DAG + ++ T+ + ++ ++ S+ + Sbjct: 466 DGFEKYLKIMNQNIYRLTKIIDNLIDITKIDAGYLSVDLHTVEIVSVIEDITMSVIEFVK 525 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 I I +D + D ++ ++ +LSNA+ F+ KG + + N V Sbjct: 526 SKGIDIVFDTDVEEKFMPVDSDKIERVMLNLLSNAVKFTPKGGKITVNVYDKNDSIQIRV 585 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 K+ G IP+DM +++F RF V+ ++ G G+GLSIV+S I +HGG + + S Sbjct: 586 KDTGIGIPKDMKETIFQRFIQVNKTLIREKEGSGIGLSIVKSLIEMHGGQIRVES 640 >gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] Length = 693 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 7/237 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+T + L E + A+ K+ F+ +S+E+R+PL ++G D L S L Sbjct: 304 NITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADS---GLR 360 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V+ + S+ +LL ++NDILDL+ +++G +L + + D +N V ++ + Sbjct: 361 QEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQAR 420 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI ++ D + S + D+ R+ QI ++ NA+ F+S GS +L A R + S Sbjct: 421 NKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTSTGSVRVL-ARRVEDNIEIS 479 Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 V + G I + ++F+ F R+ G GLGL+I + I+ G + + SS Sbjct: 480 VIDTGIGIAKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSS 536 >gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 1238 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+E+R+P+ ++G T+LL+ ++L +KQ +V+ + S LL +++DIL Sbjct: 562 KSEFLARMSHEIRTPMNGVLGMTELLQRTRL---TAKQRSFVDTVYRSGQTLLTIIDDIL 618 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG + L L LL++V + + ++ + +V D RL Sbjct: 619 DFSKIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRL 678 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 QI + ++ NA+ F+ +G + A D+G +F++ ++G I D+ +F F Sbjct: 679 RQILTNLVGNAIKFTERGQVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQADS 738 Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSD--EGVTTINCRI 788 R+ G GLGL I + GG +++ S+ V T+ R+ Sbjct: 739 STARKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVTARL 783 >gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] Length = 752 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 128/235 (54%), Gaps = 9/235 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA+ A E ++ +A + K F+ ++S+++R+P+ IIG T L+K K +++ Sbjct: 352 RAQDAAAEALQSAERASKAKTDFLSNMSHDIRTPMNAIIGITALMKNELHEP--EKLAEH 409 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + +S +LL ++N+ILD++ +++G L+ + L ++++ I + + + Sbjct: 410 LGKLESSGQLLLGIINNILDMSRIESGKTTLHVEKMNLPQQISQLDSIIRQQAGQRSQSF 469 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDN--GDFIFSVK 724 V ++ + + +AD RL Q+ ILSNA+ ++ G + L+ R+ + F V+ Sbjct: 470 TVSTNLQHENVLADPNRLNQVLMNILSNAVKYTPTGGHIRLEVEELPRNEHYARYRFVVQ 529 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 ++G + D K++F+ F G + G GLG++I +S I+L GG +S+ S+ Sbjct: 530 DDGIGMSADYQKTLFDPFTREERSGTNKVQGTGLGMAITKSVIDLMGGSISVESA 584 >gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp. lyrata] gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp. lyrata] Length = 923 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 141/284 (49%), Gaps = 47/284 (16%) Query: 543 VNVTDSV--RAERALTEKNEALRKADEIKNSFVQHV--------------SYELRSPLTN 586 + VT+ V R + A ++ A+RKA E + + H+ S+E+RSPL+ Sbjct: 326 MEVTEQVDKREKMAKLREDNAVRKAMESELNKTIHITEETMRAKQMLATMSHEIRSPLSG 385 Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646 ++G ++L T++L + +Q Q + + +S ++L L+NDILDL+ V++G+MKL + Sbjct: 386 VVGMAEILSTTRL---DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFR 442 Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 +++ V Q+ A + ++ I+D V D R+ QI + ++SNA+ F+ +G+ Sbjct: 443 PREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHEGN 502 Query: 707 TVI-------LKAARDN---GD---------------FIFSVKNNGSSIPEDMCKSVFNR 741 I ARDN D V + G IPE+ +F + Sbjct: 503 VGIKLQVISEPSFARDNTLTADTEEQEQNGLTETSVWICCDVWDTGIGIPENAIPCLFKK 562 Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 ++ S H + G GLGL+I + + L GG ++++S +EG T Sbjct: 563 YMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGST 606 >gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 918 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 497 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 + K +I+ F + S+EL++P+T+I G+ +LL+ S L S + + I + + Sbjct: 265 IEKEKQIRQEFFSNASHELKTPITSIQGYAELLE-SGLIQDESMKMDFARRIKKEAVNMT 323 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDIL ++ ++A ++ + + ++ LL E+ S+ + + + + +D + Sbjct: 324 GLINDILMISKLEAKDAEVVVTDVRISVLLEEIMDSLKPQAASSQVFLH--ADCQPLCIR 381 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 A+ Q++ ++ + +LSNA+ ++ G V + G+ + V++NG IPE+ +F R Sbjct: 382 ANVQQMKELLTNLLSNAVKYNHPGGQVWINIREQGGNMVIRVRDNGMGIPEESLDRIFER 441 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V ++ G GLGLSIV+ +N + G + ++S E T IP Sbjct: 442 FYRVDKGRSRKQGGTGLGLSIVKHIVNFYQGTIHVTSKLEQGTEFVVTIP 491 >gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] Length = 498 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619 L + ++I+ FV +VS+ELR+P+T+I GF++ L G+ ++ ++E I S Sbjct: 269 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAYKDEKMLISFLEIIYKESNR 325 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+ D+L+L+ ++ +N + L D+L + A ++ E N+ +V DG + Sbjct: 326 LQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDV-Q 384 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D R++QI + +++NA+ +S + +TV ++ + I +++ G I + VF Sbjct: 385 VMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETYGIIEIEDQGIGIEKHEIARVF 444 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A G GLGL+IV+ + H G + + S TT+ IP Sbjct: 445 ERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTMIVMIP 496 >gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1064 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 12/258 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +++T+ + E+ L + + K+ F+ +S+E+R+PL I+G DLL + Sbjct: 532 VLLDMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGDLLGET--- 588 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ Q Y+ + L+ L+ DILDL+ ++ G ++L + + L+ EV + + + Sbjct: 589 ALSPVQRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALVEEVCEVVTS 648 Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD- 715 H+ + + + D L + D++RL QI +L NA+ F+ G ++ AAR Sbjct: 649 SAHDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLDIRHDAARSA 708 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 G + V++ G + E+M + VF F R+ G GLGL+I + ++ GG + Sbjct: 709 AGAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRLVSKMGGDIQ 768 Query: 774 ISSS-DEGVT-TINCRIP 789 + S+ G T T+ +P Sbjct: 769 LESALGRGTTATVQLVLP 786 >gi|297180418|gb|ADI16634.1| signal transduction histidine kinase [uncultured delta proteobacterium HF0010_01J10] Length = 692 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E +EA +KAD F VS+ELRSP+T I + L+ +Q+ Y + I A Sbjct: 455 ELDEARQKAD-----FAAIVSHELRSPITQIRLKGEALQLDLTVDDQDRQAHY-DAIVAQ 508 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + L LV+++LD A+++ G ++ L LL +++A + ++V Sbjct: 509 AERLSRLVDNVLDFASIERGSKTYAIKSVALKPLLTLTARTMADEARAAGAPLRVNVPDH 568 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L + DR + Q+ ++SNA+ + + G + L+A +V +NG IP++ Sbjct: 569 LPRVMCDRDAITQVVLNLISNAIKYGASGGVITLEAQLAPKGVRVAVADNGQGIPKESQD 628 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782 +F + V++ ++RG G+GL+IV + HGG++ ++SS EG T Sbjct: 629 RIFEHYYRVASTSVRKKRGTGIGLTIVRYIVEAHGGNIGVTSSPGEGAT 677 >gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 776 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 9/266 (3%) Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576 S V E + PL NA+ + ++T+ RAE+ LT N L KAD K+ F+ + Sbjct: 363 SRGVCETVVKPLANARGDVYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATL 422 Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636 ++ELR+PL + ++L+ + S+ V + +LV+D+L+++ + G Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV--FDRQLQHMTHLVDDLLEVSRITQG 480 Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696 ++L + L + ++ + ++ + V + +AD RL Q+ +L+ Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLN 540 Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754 NA ++ G ++ L A R+ + + V+++G IP + SVF F ++ A + G+ Sbjct: 541 NAAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGL 600 Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780 G+GL++V LHGG V+ S G Sbjct: 601 GIGLALVRGLAELHGGTVAAFSEGPG 626 >gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 633 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 9/234 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ +K+ F+ ++S+E+R+PL ++ +++ + L Q + + I S +LL ++ Sbjct: 246 ANVLKSHFLANMSHEIRTPLNGVLAMAEVMD---MDDLKPAQRERLAVIRESGGLLLAVL 302 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LDL+ ++AG +++ + L +++S A + E + +V ++ G + D Sbjct: 303 NDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGD 362 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 RL QI ++SNA+ F+ +G+ + +A D V + G I ++ +F++F Sbjct: 363 VDRLRQILGNLISNALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGIAPEILPRLFDKF 422 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792 V RR G GLGL+I L GG + + S + G T T+ +P +E Sbjct: 423 VQADSSTTRRFGGSGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPREE 476 >gi|260494920|ref|ZP_05815049.1| sensor histidine kinase [Fusobacterium sp. 3_1_33] gi|260197363|gb|EEW94881.1| sensor histidine kinase [Fusobacterium sp. 3_1_33] Length = 623 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 6/241 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V + L+ E A++ KN F+ +S+E+R+PLT IIG++ +L ++ ++SK+ Sbjct: 140 VERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-LKEINDVSSKEK- 197 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I S LLN N++LD + +++G + LNY T + L ++ NI Sbjct: 198 -LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKMKNIN 256 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 K+ S +D+ ++ +I I+ NA+ ++ KG V+ + F+V ++G Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG-FVLCDIFVEKNTLFFNVYDSGI 315 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + E+ K++F FV + ++ G GLGLSI + + + G + + S +T +I Sbjct: 316 GMSEENIKNIFESFVQIGN--EQSGAGLGLSITKKLLEVLNGKIEVESKVGMGSTFKIQI 373 Query: 789 P 789 P Sbjct: 374 P 374 >gi|169334063|ref|ZP_02861256.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM 17244] gi|169258780|gb|EDS72746.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM 17244] Length = 915 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 15/250 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + E+ EA KA K+ F+ +S+E+R+P+ IIG T++ ++ L + + Sbjct: 532 KVKVEEAEASSKA---KSEFLSLMSHEIRTPINAIIGLTNINMMNE--DLPEPLKKNLSK 586 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I +S+ LL+LVNDILD++ + M +N L ++N++ + +K E I++ Sbjct: 587 IDSSAQFLLSLVNDILDMSKIQNYKMVINSECFDLTKVINDIDELFISKKEEKCIKLTYD 646 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARD--NGDFIFSVKNNG 727 D + F+ D R+ QI S I+SNA F+ + +IL + +D + D FS+K+NG Sbjct: 647 IDLQNKYFMGDSVRIKQIISNIVSNAFKFTEEDGEIILTIREIVKDSNSSDVFFSIKDNG 706 Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG---VT 782 I ED +F F + + G GLGL I + L GG + + S++ EG Sbjct: 707 IGIKEDKLSKIFEAFEQVSINYNNETGTGLGLFICNHLVKLMGGDLKVKSTEGEGSDFYF 766 Query: 783 TINCRIPSKE 792 T+N I S++ Sbjct: 767 TLNLPIASEK 776 >gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1131 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 131/255 (51%), Gaps = 12/255 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++ V ER L+ E R A + K++F+ +S+E+R+PL +IG +DLL++ ++ Sbjct: 737 IDIFRQVEVERKLSRALEQARLAAQAKSTFLATMSHEIRTPLNAVIGLSDLLRSPRIS-- 794 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++++ + E I+ S LL L+ND+LDL+ ++A M+L + L LL+EV Q A Sbjct: 795 DAQRVAFSEAINTSGKALLQLINDVLDLSKIEAMKMELRPGPVSLTQLLSEVHQIFAQSA 854 Query: 663 HENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDN 716 + + V + + + D R+ Q+ ++ NA+ F+++G V L+ A + Sbjct: 855 ADKGLEFEFVPPEPEPPKLLLDEVRVRQVLLNLIGNAVKFTTRG-FVKLECALGFNRTPD 913 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + + +V ++G I + +F F V+ R G GLGL+I + I G + Sbjct: 914 CEVLITVADSGVGIDPEFMAHLFEPFRQAVNADSRSFEGGSGLGLAISKRLIEQMNGTLD 973 Query: 774 ISSSDEGVTTINCRI 788 + SS TT R+ Sbjct: 974 VESSLGVGTTFTVRL 988 >gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 701 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 17/236 (7%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ VS+ELR+P+T IIG+ +L+T L +K + +E I ++ + + L+ D+L Sbjct: 292 KDEFLAIVSHELRTPMTAIIGWAGMLQTGVLD--EAKATLALEIIERNANLQMQLIEDLL 349 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D++ + G + L+ + L +++ + + + + +I+++ I D + D RL Sbjct: 350 DISRIVRGELSLSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKIWGDSDRLQ 409 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMCK 736 Q+ +L+NA+ F+ G V ++ +++ G V + G I D Sbjct: 410 QVVLNLLTNAIKFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGKGISPDFLP 469 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 VF RF + H +G+GLGL+I + LHGG + S G T ++P Sbjct: 470 HVFERFWQADSTHTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFTVKLP 525 >gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 680 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 6/249 (2%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++TD R E L + K+ F+ ++S+E+R+PLT I+G+ +LLK +G L Sbjct: 281 DITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIRTPLTTILGYANLLK--GVGDLP 338 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Y+ I+ + LL+L+ D+LD + ++AG + L+ L L +V Sbjct: 339 KDARHYIGRINKAGEALLSLITDVLDFSKLEAGQVTLDPQPTDLRQLAGDVVDQFMAMTD 398 Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 NI I D ++ D R+ Q+ ++ NA F+ G + A D G Sbjct: 399 TRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIGNACKFTHDGYVAVTLAVSD-GQLRVK 457 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 VK++G + + +F RF V N+ + G GLGLSI + L G + + S Sbjct: 458 VKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGLGLSICHEIVKLMQGRIGVESEAGQ 517 Query: 781 VTTINCRIP 789 +T IP Sbjct: 518 GSTFWFEIP 526 >gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 396 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 23/257 (8%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 + R L K EA A+ K +F+ ++S+ELR+PL I G +LL S L+++Q Sbjct: 137 AARTAELLRAKEEA-EAANRAKTAFLANMSHELRTPLNGIHGMIELLAES---GLDAQQR 192 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ +Y+ S+ LL L+ +++L+ +DAG M L + L++ L + + + K + Sbjct: 193 EFADYLRGSANRLLALLTSLMELSRLDAGGMVLAPAPYDLSETLEALTAAFSRKAAAKGL 252 Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720 + + V DR L+Q +L NA+ F+ +G V+ D + Sbjct: 253 SFRADMATDMPRLVVGDRAALVQALVNLLENAVKFTPRGGVVLAAGPMDPPADVRAFPEE 312 Query: 721 ---------FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHG 769 F V + G I +D ++F FV + + G GLGL I + LHG Sbjct: 313 RTPWRRWLRFCVHDTGVGIAQDKLANIFRSFVIAEDFLSKEFGGAGLGLCIAKELAALHG 372 Query: 770 GHVSISSSDEGVTTINC 786 G V++ S+ GV + C Sbjct: 373 GRVTVESA-PGVGSRFC 388 >gi|316935647|ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315603361|gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1195 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +++ R E L++ +A K + +S+E+R+PL IIGF +++ + G Sbjct: 940 FRDLSQVQRTETELSQARRLAERAAGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 999 Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L N + Y++ I AS ++ +V+D+LDL+ ++ G + L ++++ LN+L+ + + Sbjct: 1000 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASVNLNELVEQSVAVMQP 1059 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719 + + I I+ L + VAD Q L QI ++ ++ ++ G VI+ A D G+ Sbjct: 1060 RANRERIIIRTSLAHLLPAVVADAQALRQIIMNLIGTSIHLANAGGQVIVSTALSDVGEV 1119 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 + +++ GS + +D + F + A + G+ LS+ ++ + + I S+ + Sbjct: 1120 MLRIRDTGSRLNDDELAAALQPFRTPAPSDRTEAAGVSLSLTKALVEANRATFHIKSAPQ 1179 Query: 780 GVTTINC 786 T I Sbjct: 1180 SGTLIEV 1186 >gi|262382343|ref|ZP_06075480.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295221|gb|EEY83152.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 569 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +R ERA E +AD +K++F+ ++++E+R+PL I+GF+ +L + + Sbjct: 332 GLRLERA----KEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE---DRETRL 384 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I +++ +L L+ D+LDL+ +++ M L Y + + L+ E+ I +M + I Sbjct: 385 EFSNIIQSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRM-PSGI 443 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++ ++D + AD+ RL QI + +L+N++ + KG + R F V+++G Sbjct: 444 ELR-LNDCEALVMEADKNRLTQILTNLLTNSIKHTEKG-FIRFGYKRTAASVEFFVEDSG 501 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP D S+F+RFV +GVGLGL+I + GG + ++S Sbjct: 502 EGIPRDKIDSIFSRFVQ--LDSWSKGVGLGLAICRGLVEQMGGKIWVTS 548 >gi|257063842|ref|YP_003143514.1| signal transduction histidine kinase [Slackia heliotrinireducens DSM 20476] gi|256791495|gb|ACV22165.1| signal transduction histidine kinase [Slackia heliotrinireducens DSM 20476] Length = 556 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QS 607 AE+A L E N L + D K+ F +S+ELR+P T I + D+L+ G L+ + + Sbjct: 305 AEQAAKLEEMNRRLTENDLYKSHFFTMMSHELRTPTTVIRAYIDMLEEE--GDLDDEARR 362 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 V+ I ++ L LV+ IL+ A ++AG +KL + + D++ EV++++ + +I Sbjct: 363 NAVKAIRTNAQSLSKLVDSILESARMEAGAVKLEKTVVDAADIMVEVEKTLTPLAQDKSI 422 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKN 725 ++V S G F+AD +LL I + SNA+ ++ G V + A+ D G+ F V + Sbjct: 423 DLQV-SYGNTPLFMADANKLLHILENLGSNAIKYTGFGGEVSVSASLDEEAGEMRFVVSD 481 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG I E + VF +F + G GLGL++ + + LHGG + + S+ + Sbjct: 482 NGIGISEADKQVVFEKFKQAGSSVSKPVSGSGLGLALAKEYAELHGGSILLESALGQGSE 541 Query: 784 INCRIPSKE 792 IP +E Sbjct: 542 FTVCIPFEE 550 >gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 468 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 123/236 (52%), Gaps = 10/236 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + E+ L E +A A + K+ F+ ++S+E+R+PL I G L++ + SL+ +Q + Sbjct: 217 KVEQELIESRDAAEAATKAKSGFLANMSHEIRTPLNGIFGMLQLMEDT---SLDEEQQEL 273 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ AS +L +++DIL+ A +D +L L ++ + QS+ + + I Sbjct: 274 LQTAKASGRGILTILSDILEFAGLDQVEPRLENRPFDLRSVVQQTIQSLEASARQKGLGI 333 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK 724 K+ I+ G D+ R+ QI +LSNA+ F+ G +L++ D+ F++ Sbjct: 334 KLSIAADLPGEVCGDQARVRQILFNMLSNAVKFTQDGEIHLDVSLLRSYEDSILAGFALS 393 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 ++G I +D+ VF F + RR G+GLGLSI + + L GG +++ + + Sbjct: 394 DSGPGISDDLIFQVFQPFSQADNSFTRRHGGLGLGLSIARNLVKLMGGTIALDTEE 449 >gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B] gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium NOR51-B] Length = 1316 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 134/257 (52%), Gaps = 19/257 (7%) Query: 543 VNVTDSVRAERALTEKNE--------ALRKADEI---KNSFVQHVSYELRSPLTNIIGFT 591 VN+ + ER LT++ + A R+A+E K+ F+ +S+E+R+PL +IG Sbjct: 659 VNLAQAEARERELTQRVQERTLDLELATREAEEANRAKSEFLAVMSHEIRTPLHGMIGMN 718 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +LL + + +Q ++ + S LL+L+N+ILDLA ++A M++ + L +L+ Sbjct: 719 ELLIKT---DITPQQRRFTKAALNSGKTLLHLINEILDLAKIEADRMEVEETDFDLIELI 775 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 +EV + + I + + + + + D Q++ QI + +L NA+ F+ +G + + Sbjct: 776 DEVCYLQGEPAQKKGLAIYHLPEAGIANRYRGDSQKIRQIVTNLLGNAIKFTDRGH-ITV 834 Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 + R D I +V++ G I E++ +F +F R+ G GLGL+I +F L Sbjct: 835 RVQRTIDDTISIAVQDTGIGIHEEVRDRIFEKFTQADASTTRKYGGTGLGLTICRNFATL 894 Query: 768 HGGHVSISSSDEGVTTI 784 GG + I S +G T+ Sbjct: 895 LGGKLDILESGDGTGTL 911 >gi|160938729|ref|ZP_02086081.1| hypothetical protein CLOBOL_03624 [Clostridium bolteae ATCC BAA-613] gi|158438428|gb|EDP16187.1| hypothetical protein CLOBOL_03624 [Clostridium bolteae ATCC BAA-613] Length = 446 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 16/242 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + L ++ + +N F+ S+ELR+PL I +T+ ++ +++ I + Sbjct: 201 KPLAESQKQQNEFIAAASHELRAPLAVIRSSICAARTAP-----DQREKFMANIDRECSR 255 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678 + LV D+L LA+ D G L S++ ++ LL + + + + +K+ + + L Sbjct: 256 MSCLVGDMLLLASADTGQWSLRTSSLDMDTLLISIYERFEPLYQDKGVCLKLDLPEASLP 315 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSS 729 D RL QIF+ +L NA+ ++ KG +V + A+ R +V + GS Sbjct: 316 RIYGDENRLEQIFAVLLDNALRYTPKGRSVTVAASVQTDKHLLSRSRSIVCLTVSDQGSG 375 Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + ++ K +FNRF ++ R ++ GLGLSI + + LH G +S+S S +G R+ Sbjct: 376 MDDETKKHIFNRFYRGDSARSHKQNYGLGLSIAKELVQLHKGTISVSDSPDGGACFLVRL 435 Query: 789 PS 790 P+ Sbjct: 436 PA 437 >gi|225437449|ref|XP_002272649.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Length = 636 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 43/312 (13%) Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562 +I D RK + LEL+ + V + + L +A + +S+RA L E+N AL Sbjct: 278 LILPSDSGRKWREHELELV-EVVADQVAVALSHAAIL------EESMRARDQLMEQNVAL 330 Query: 563 ----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 R+A+ +N F+ +++E+R+P+ II + L ++L +Q +E + Sbjct: 331 DLARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSFLLETEL---TPEQRAMIETVLK 387 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 SS +L L+ND+LDL+ ++ G ++L+ T L+ +L EV I + + +I Sbjct: 388 SSNLLATLINDVLDLSRLEDGSLELDIGTFNLHAVLREVVNLIKPISSIKKLSMTLILAP 447 Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RD-----------NG 717 L V D +RL+Q + NA+ F+ +G ++ + RD +G Sbjct: 448 DLPECAVGDEKRLMQTLLNVTGNAVKFTKEGYVSVIASVAKPETLRDWRTPEFYPVPSDG 507 Query: 718 DFIFSV--KNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772 F V K++G I P+D+ +F +F + + R GVGLGL+I + F++L GGH+ Sbjct: 508 HFYLRVQIKDSGCGITPQDI-PLLFTKFAQSRNGSNRTNSGVGLGLAICKRFVSLMGGHI 566 Query: 773 SISS--SDEGVT 782 I S D+G T Sbjct: 567 WIESEGPDKGCT 578 >gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50] gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50] Length = 501 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R + E + L +++E + SF+ ++S++ RSPLT+I G+ + + + K +Y++ Sbjct: 231 RYMEEMADELSRSNEYRRSFISNISHDFRSPLTSIKGYIEAMIDGTIPP--DKHEKYLQI 288 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + + L L +L+L D+ ++L+ S + ++ + + + I + I Sbjct: 289 VLSETMRLTKLTQGLLELNNFDSFDLQLDKSNFDIKSIILPTINTFEGRCQDKGIYLHAI 348 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ADR R+ Q+ ++ NA+ F+ +G + ++ + SVK+ G IP Sbjct: 349 FHTDNTIVYADRTRIQQVIYNLVDNAIKFTPEGRQITVQVTEKSDKVYVSVKDEGVGIPP 408 Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 + K VF+RF ++ RG+ + G GLGL+I + I HG +++++S Sbjct: 409 ESIKKVFDRFYKTDPSRGKDKTGTGLGLAITKEIIKAHGENITLTS 454 >gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] Length = 1497 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 23/269 (8%) Query: 541 TFVNVTDSVRAERALTEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGF 590 T +++T+ R E+ L +N+AL +A ++ K+ F+ ++S+E+R+P+ +I+ Sbjct: 1084 TVMDITERKRIEQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLV 1143 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 LL+ +KL +++Q + ++ ++ +S LLN++NDIL L+ +++ ++L + LN++ Sbjct: 1144 GQLLEGTKL---DTQQKKLLQTLTNNSNHLLNIINDILSLSKLESRSLELEHRPFHLNEM 1200 Query: 651 LNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708 E+ + + I + I+ + D RL Q+F ++SNA+ F+S G TV Sbjct: 1201 FQELSNTFTPQAQSKEIGLTFTIASDVPDVLMGDDFRLQQVFRNLISNAIKFTSSGQVTV 1260 Query: 709 ILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760 RD+ + F+V++ G I + +F FV N+ Q G GLGL+I Sbjct: 1261 NASCDRDSVSEKSQVNLYFTVQDTGIGIDPAKQEDLFQPFVQADNSTTRQFGGTGLGLTI 1320 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 I G + + S +T +IP Sbjct: 1321 CRRIIQTMNGEIGLDSIVGEGSTFWLKIP 1349 >gi|160872826|ref|ZP_02062958.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] gi|160872926|ref|ZP_02063057.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] gi|159120313|gb|EDP45652.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] gi|159121625|gb|EDP46963.1| sensory box sensor histidine kinase/response regulator [Rickettsiella grylli] Length = 396 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 10/257 (3%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V+VT + E L + + + A++ K F++++ +++R+PL+ IIG +LL+ SK L Sbjct: 127 VDVTKEKQQEEVLKKAKKQVEVANQAKTEFLENMRHDIRTPLSGIIGCAELLQ-SKTNDL 185 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 S+Y + SS LL+ N++L+ V G + L L E+ + Sbjct: 186 TI--SEYANDLVKSSHALLDFHNNVLEGIQVATGEIPFVKKKFDLRQPLEEIINLNKSLA 243 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718 E + ++ D ++ +V D R+ +I ++LSNA+ F+ KG + LK Sbjct: 244 AEKQLILQFHYDERIPQYVMGDPVRVQRILLELLSNALTFTKKGQVTVNIALKKKESREV 303 Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 + SV + G IP+D + +F RF ++ +++G +G+GLGL+ V+ F++ G + + Sbjct: 304 IVELSVSDTGMGIPKDKQEEIFIRFKRLTPSYKGIYKGLGLGLTTVKQFVDDLDGEIYVE 363 Query: 776 SSDEGVTTINCRIPSKE 792 S + T C IP +E Sbjct: 364 SELDHGATFTCFIPFQE 380 >gi|239993376|ref|ZP_04713900.1| Signal transduction histidine kinase [Alteromonas macleodii ATCC 27126] Length = 641 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 15/241 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ K F+ +S+E+R+PL I G LL ++L + KQ QY + +S++IL Sbjct: 253 QQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDTQL---SDKQHQYASDLKSSASILAT 309 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 ++ND+LDL+ +++G+ +++ + L+ +LN++ + T N+ R+ S V Sbjct: 310 VINDVLDLSKIESGMSEVDVTEFDLDAMLNDLITLLGTNASANSTRLVYKSKNMESVAVT 369 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD------FIFSVKNNGSSIPEDM 734 +D +L QI ++SNA+ F+ KG+ T+ K + + D + +VK+ G I D Sbjct: 370 SDITKLRQIIINLVSNAIKFTHKGTVTISAKLKQPSQDTVSENHLVIAVKDTGIGIEPDR 429 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT-TINCRIPS 790 + +F++F + R+ G GLGL+I + + GG + +S EG T+ ++ S Sbjct: 430 LEHIFDKFTQSDSSITRKYGGTGLGLAIAKQLAQILGGDIKVVSKVGEGSCFTVTAKVQS 489 Query: 791 K 791 + Sbjct: 490 R 490 >gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 940 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 128/248 (51%), Gaps = 15/248 (6%) Query: 553 RALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R++ E+ A ++AD + K+ F+ ++S+E+R+P+ I+G LL++++L + +Q +Y Sbjct: 466 RSVHEQKVATQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTEL---SPEQQEY 522 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 S++ L L++DILDL+ ++AG M++ + L L + V + E +I + Sbjct: 523 TNMGIVSASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISL 582 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSV 723 + D L + D RL QI ++ NA+ F+ +G + + RD + +V Sbjct: 583 EFTQDPCLPQVLLGDEARLQQIVFNLVGNALKFTQEGRISVNWHLQQRRGRD-ARVLLTV 641 Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G + +D +F F NA + +G GLGLSIV+ + L G +++ S+ Sbjct: 642 SDTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQG 701 Query: 782 TTINCRIP 789 +T +P Sbjct: 702 STFFVSLP 709 >gi|198283276|ref|YP_002219597.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665237|ref|YP_002425863.1| phosphate regulon sensor protein PhoR [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247797|gb|ACH83390.1| integral membrane sensor signal transduction histidine kinase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517450|gb|ACK78036.1| phosphate regulon sensor protein PhoR [Acidithiobacillus ferrooxidans ATCC 23270] Length = 442 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 19/281 (6%) Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571 SLQ + +LE PL +A ++ F +VT +R+ ++++ Sbjct: 164 PSLQLPAPADAQQILEGMRYPLADAGALVIFRDVTR--------------IRQLEQVRQD 209 Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 FV +VS+ELRSPLT + GF + + S + + + SQ + + + + +LV D+L LA Sbjct: 210 FVANVSHELRSPLTVVRGFLENMLDSPIAADDEVSSQ-LRLMEQQTLRMQSLVEDLLSLA 268 Query: 632 TVDAGIMKLNY-STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690 ++A + T+++ +++ ++A + + ++I DG LG F A+ L I Sbjct: 269 RMEAAEANPEHCETLMIAAMIHNTLDTLAPAIVQKRLQIDTALDGDLGIF-AETIDLTSI 327 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 +L NA+ ++ TV ++ R +GD V++ G I + + + RF Sbjct: 328 IRNLLENAIKYTPADRTVSVRWERRSGDLRLVVQDTGDGIAAEHLQRITERFYRVDKGRS 387 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGL+IV + + G++ ++S TT P Sbjct: 388 RRMGGTGLGLAIVRHAVERYQGYLEVASEVGKGTTFTAHFP 428 >gi|167769066|ref|ZP_02441119.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM 17241] gi|167668706|gb|EDS12836.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM 17241] Length = 877 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615 E L K ++++ + ++ +S++LR+PLT I G ++LL KL +K+ Y + I Sbjct: 637 EAAAVLAKNEQLRANLLRSISHDLRTPLTAISGNASNLLSNGKLFDAQTKEQMYTD-IYD 695 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 + L+NLV ++L ++ ++ G M L+ ST ++++++ E + I K + ++ ++ + Sbjct: 696 DAMWLINLVENLLSVSRLEEGRMNLHMSTELMDEVIAEALRHINRKSADYHLIVREPDEY 755 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDM 734 L D + ++Q+ I+ NA+ ++ GS + ++ + GDF+ S+ +NG I + Sbjct: 756 ILVQI--DVRLIVQVLINIIDNAIKYTPVGSDIRIEW-KKQGDFVLVSIADNGPGISAEA 812 Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F F S + + RR +GLGL++ +S +N HGG +S++ T IPS E Sbjct: 813 KPHIFEMFYSASAKIADSRRSMGLGLALCKSIVNAHGGEISVADQIPHGTIFTFSIPSGE 872 >gi|124003297|ref|ZP_01688147.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991395|gb|EAY30826.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 360 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ ++ +S++LRSPL +I+G T LL+ N S+Y++ I S NL+ D+L Sbjct: 136 KDEMLRMLSHDLRSPLQSILGLTQLLEMETHSLDNQDLSKYIQLIKESCNFANNLMADLL 195 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687 D +++ G +LN S L+ LL E + + NI + +I D S D ++ Sbjct: 196 DTHSLEEGKGELNLSETKLSKLLTESCHMFEQQAIKKNISLNLIIDAAHDSEMTLDATKI 255 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747 +Q + +LSNA+ F+S+ V + + VK++G IP D +F++F Sbjct: 256 IQAVNNLLSNAIKFTSRHGQVTVTLNDASNYATICVKDSGIGIPADKIPFLFDKFTKARR 315 Query: 748 RGQ--RRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 G + GLG+SI + I+ H G +S+ S +EG + I Sbjct: 316 AGTSGEKTTGLGMSITKHIIDQHKGEISVESKVNEGTSFI 355 >gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1111 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +N L++ +IK+ F+ + S+ELR+PL IIG D L G L +K ++ + I+ Sbjct: 430 LENQNIELKRLSQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLPTKTTENLTMIA 489 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL LVNDILD + + ++L ++ L ++L+ V + + + NI++ Sbjct: 490 NSGRRLLTLVNDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLVGQKNIKLINSVP 549 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSI 730 L AD RL QI ++ NA+ F+ G+ I + N ++ + G I Sbjct: 550 DDLPGVEADENRLQQILYNLIGNAIKFTESGTVEITACEKIIDESNHYIAVTISDTGIGI 609 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ED + +F F R+ G GLGL++ + + LH G + + S Sbjct: 610 SEDKLEQIFASFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVRS 657 >gi|21307600|gb|AAK59397.1| KfaA [Myxococcus xanthus] Length = 518 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 DS R + L L+ ++ + + +VS++L++PLT I + ++ KLG L Q Sbjct: 129 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMMGREKLGPLTDAQ 188 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V+ +S +L +VND+L ++ + +G M+LN L + EV +S+ Sbjct: 189 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRSLGALAEHCK 248 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R+ + ++ FV DR+R+ + ++ N + S TV ++ + ++G + +VK+ Sbjct: 249 VRVVIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 306 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 +G + + + VF+ F A G R G GLGL +V + LHGG + S S EG T Sbjct: 307 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 365 >gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB] gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB] Length = 1439 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T AER A K F+ ++S+E+R+P+ IIG T L ++L Sbjct: 688 VDITALKEAEREADRARATAESAAAAKADFLANMSHEIRTPMNAIIGMTHLALQTEL--- 744 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 NS+Q Y+ + ++ LL ++NDILDL+ ++AG+M ++ L+ L + + K Sbjct: 745 NSRQKNYLTKVDNAAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDASLERLSDMCSLKA 804 Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG- 717 E + + I+ + D RL Q+ ++ NA+ F+ G TV L A R+N Sbjct: 805 RERGLELLYDIAPEVPDQLIGDSLRLGQVLLNLVGNAIKFTEAGEITVTVKLLANRENEV 864 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 D F V + G + + +F+ F R+ G GLGLSI + + L GG + +S Sbjct: 865 DLGFEVIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICKRIVELQGGSIGVS 924 Query: 776 S 776 S Sbjct: 925 S 925 >gi|331646251|ref|ZP_08347354.1| TMAO reductase sytem sensor TorS [Escherichia coli M605] gi|331045003|gb|EGI17130.1| TMAO reductase sytem sensor TorS [Escherichia coli M605] Length = 910 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTVL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRIDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRVP 661 >gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1478 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 5/230 (2%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER + EA R + IK+ F+ +S+ELRSPL I+G+ LL++ N Q++ +E Sbjct: 1090 EREKLAREEAER-VNRIKDEFLAVLSHELRSPLNPILGWAQLLRSGSFDKAN--QNKALE 1146 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I ++ + L+ D+LD++ + G + LN + + L + +++ +I IK Sbjct: 1147 IIERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSAQAKSIEIKT 1206 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + D R+ QI +LSNA+ F+ +G + + + N +VK++G I Sbjct: 1207 NLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQITVKDSGKGID 1266 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 VF F R+ G+GLGL+IV + +HGG VS S+ E Sbjct: 1267 PQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGE 1316 >gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 12/245 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY- 612 A T ++ + ++ K F+ ++S+ELR+PL I+GF++ ++ G L +YVEY Sbjct: 217 AKTRLYASMERENKAKTEFLANMSHELRTPLNAILGFSEAMQMELFGPLG--HPRYVEYM 274 Query: 613 --ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I + T LL+LVNDILDL+ ++ M L I + + + + + +++ Sbjct: 275 HDIHHAGTHLLSLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLI 334 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGS 728 D +RL Q+ +LSNA+ F+ G TV L + A D G I +++ G Sbjct: 335 FECAPPFPEVETDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAPDGGG-IIRIRDTGI 393 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E + F A G R G GLGL++V + L GG ++I S T + Sbjct: 394 GMSETEVEQALRPF-WQADAGLDRSFEGAGLGLALVSELLQLMGGSITIESERGAGTLVT 452 Query: 786 CRIPS 790 +P Sbjct: 453 VGLPP 457 >gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] Length = 553 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 9/226 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+E K+ F+ H+S+E+R+PL I+G TD+L ++ LN Q ++++ I S LL ++ Sbjct: 185 ANEAKSQFLAHMSHEIRTPLNGILGLTDILAQTQ---LNENQLEFIKTIRHSGEALLAII 241 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + ++AG ++L L L ++++ +++ + ++ + D + F+ D Sbjct: 242 NDILDFSKIEAGKLELESIDFSLPTLCDDLEGLFISQVQDKGLQFDINLDPNIPEFLNGD 301 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741 R+ Q+ ++SN++ F+ +G + + F V ++G I E+ +F Sbjct: 302 PLRIKQVLLNLISNSLKFTHEGYVKLDIRQSQATPLVLEFKVSDSGIGISEEKQDQLFKP 361 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784 F R+ G GLGL I + + L GG++ + S D+G T I Sbjct: 362 FTQVDSSTTRKYGGTGLGLQISQRLVQLMGGNIRLHSQVDKGSTFI 407 >gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1035 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 17/285 (5%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570 R + T+E L +Y I P T V ++ R E++ A+ KN Sbjct: 746 RAGKEATIEGLEAGADDYLIKPF---STYELIARVQTQLQMSRLRQEQS-----ANRFKN 797 Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630 F+Q V++EL++PL I+ + LL++ K +Q + I ++TI LV D+LD+ Sbjct: 798 EFLQTVTHELQAPLAAILSWARLLQSQSFD--GKKTAQALASIERNATIEAKLVKDLLDV 855 Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLL 688 +++ +G ++L + L L +V ++ I + ++ GK D +RL Sbjct: 856 SSILSGKLRLQLQPVDLVPLTQDVITTLRQTAQAKQILLIERLPDPGKQVILTGDPERLK 915 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 QI S +LSNA+ F+ V ++ + V + G I + VF RF S A Sbjct: 916 QIMSHLLSNAIKFTPNKGKVYIELDDLAFEARLRVTDTGIGISSNFLVHVFERF-SQAEV 974 Query: 749 GQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R GVG+GL+I + LH G + ++S EG T R+P Sbjct: 975 PSRHSPGGVGIGLAIARYLVELHQGTIEVASGGEGRGATFTVRLP 1019 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 28/260 (10%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ EAL + D K +F +VS+E R+PLT ++G + + L Q + ++ I + Sbjct: 341 KRAEALVELDRAKTAFFSNVSHEFRTPLTLMLGPAEDALSDASNPLAPLQYERIKIIHRN 400 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 LL LVN +LD + +++ ++ Y L E+ + + + +R+ V Sbjct: 401 GLRLLKLVNTLLDFSRIESERVQAVYEPTDLATFTAELASVFRSCIEKAALRLVVDCPLL 460 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIF---- 721 DR+ +I +LSNA F+ G + LK R+N F+F Sbjct: 461 AEPVYVDREMWEKIVLNLLSNAFKFTFSGEIKVSLRLVASEQEKLKDKREN--FVFTPSS 518 Query: 722 ---------SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 SV++ G IP +F RF V A G G+GLS+V I LH G Sbjct: 519 LPIFPYIELSVQDTGIGIPRAEIPHLFERFHRVKGAKGRTYEGSGIGLSLVLQLIKLHSG 578 Query: 771 HVSISSSDEGVTTINCRIPS 790 V +SS+ + IPS Sbjct: 579 IVGVSSTLGEGSCFKVFIPS 598 >gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1306 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 126/245 (51%), Gaps = 18/245 (7%) Query: 557 EKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 E NEALR+A E K++F+ +S+E+R+P+ IIG +++L ++L +Q +Y Sbjct: 627 EVNEALRRAKEDAEQANDAKSNFLAMMSHEIRTPINGIIGMSEVLSHTELAF---EQRRY 683 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I+ S+ LL+++ND+LDL+ ++AG M + + T +++L+ V +A ++ ++N+ Sbjct: 684 NDTITTSANALLDIINDVLDLSKIEAGKMTVRHETFCIHELVENVTNIVAPRV-KSNVTF 742 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR--DNGDFIFSVK 724 +D L +D +L QI + NA F+ G I + +R + + V Sbjct: 743 TTYTDPLLPHQITSDFSKLRQILVNLAGNAAKFTDSGYVDVSITQVSRIENRCEIALKVT 802 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G I + F F + N+ + + +G GLGL I F L G + SS + Sbjct: 803 DTGIGIEKAQLDKAFENFSQIDNSSKRRYQGTGLGLPICRKFTELLNGDIKAESSIGQGS 862 Query: 783 TINCR 787 T + R Sbjct: 863 TFSAR 867 >gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1] gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1] Length = 896 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721 D F D +R+ QI +LSNA F+ KGS + + + D+I Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S+ Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] Length = 2232 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 14/236 (5%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ ++S++LR+P+ IIG ++LL+ + +L+ Q +Y+E I + LL L Sbjct: 1825 EAANAKSTFLANISHDLRTPMNGIIGLSELLRET---NLSKDQGEYMESIRICADTLLAL 1881 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681 +NDILD + ++ G MKL+ ++ L D ++EV Q++ +N + D V Sbjct: 1882 INDILDFSKLEVGKMKLSIVSMNLKDTISEVVQALFHANRDNKLETVENLDQIPPDLVVL 1941 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 D RL QI +LSN+ F+ GS I +A + SV + G I ++ Sbjct: 1942 GDPVRLHQIIMNLLSNSYKFTPNGSVSISGKVTRAGKRRIRLECSVSDTGIGISDEQKSR 2001 Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789 +F F S A R G GLGLSI ++ I ++ GG +S+ S+ TT+ IP Sbjct: 2002 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLESTLGVGTTVTFHIP 2056 >gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 820 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 11/237 (4%) Query: 549 VRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ++ +AL + E+ A+ K+ F+ ++S+ELR+PL I+G+ +L SK+ L K+ Sbjct: 343 LKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGRSKV--LPDKER 400 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Q V I + LL L+NDILDL+ ++A ++L L + V + ++ + I Sbjct: 401 QGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQKGI 460 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI 720 D L + + AD +RL Q+ +L NA+ F+ +GS + L+ + Sbjct: 461 EFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDRGSVALRVQRTGLEESDPRTKLR 520 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 FS+ + G I +F F + ++ G GLGL+I + + L GG + + S Sbjct: 521 FSIVDTGVGIASADINKLFQTFEQVGEQKRKVEGTGLGLAISQQLVQLMGGQIQVKS 577 >gi|229188542|ref|ZP_04315582.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876] gi|228594936|gb|EEK52715.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876] Length = 314 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++++E + + +S+++R+PLT+IIG+ D LK S KQ +Y++ + S L + Sbjct: 80 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV++I ++A +DA L + +++ EV ++ ++NI ++++ +A Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPESTCPIIA 198 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741 D +++I ++ NA+ + G T+ ++ + ++ + + G IP+ +++F R Sbjct: 199 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPKHDLQNIFERM 258 Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + S R G GLGLSI ++ + +GGH+ + S+ TT IP Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307 >gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|158335539|ref|YP_001516711.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305780|gb|ABW27397.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 711 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 124/241 (51%), Gaps = 8/241 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K L + + +K+ F+ VS+ELR+P++NI +L L +Q +Y++ + Sbjct: 465 LQQKMRELERLNSLKDDFLSTVSHELRTPMSNIKMAIHMLSQF---PLEPRQRRYIKILD 521 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 A + L+ND+LDL ++AG ++ I + L + +++ + + ++V D Sbjct: 522 AECSRETELINDLLDLQRLEAGGNQIKSEPIKIQVWLPRALEPFQSRIKDRELNLRVNCD 581 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPE 732 + +F +DR L +I +++L+NA ++ + V L+ + N + IPE Sbjct: 582 QSIPTFHSDRVSLDRILAELLNNACKYTPQSGEVSLTLQYLEFPKPMLRLQVTNEAEIPE 641 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F++F V NA ++ G GLGL++V+ I G +S+SS +G TT ++P Sbjct: 642 QELPRIFDKFYRVPNADPWKQGGTGLGLALVQKLIEQLEGEISVSSR-QGTTTFIVKLPY 700 Query: 791 K 791 K Sbjct: 701 K 701 >gi|126657236|ref|ZP_01728402.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621507|gb|EAZ92218.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 856 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 22/254 (8%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E + ++ + L KA+E KN + +++ELR PL NI+G D+L + SL K+ + Sbjct: 369 ENIVKQRTKELEKANEEKNQILDKINHELRVPLNNILGSLDVLTQN--SSLTKKEQNSFK 426 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I +S LL L N IL+ + + + + Y+ + L +L+ V + + +++K Sbjct: 427 MIHENSQYLLKLFNQILEFYKLTSEEISIQYNVVNLKNLVISVLKQYDQQAKAKQVKLKY 486 Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--------- 721 D ++ ++ D +L +I +L NA+ FS KG + ++ DN ++ Sbjct: 487 YIDSEVSQYIKLDENKLTKILINLLDNAVKFSYKG-VITIRLFCDNQAWLLDNDIDYNSF 545 Query: 722 ------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 ++++G+ IP ++ K VF F + +GVGLGLSI I+L GG + + Sbjct: 546 KKNLWIEIEDHGNGIPIEIQKKVFKPFF---RWKENKGVGLGLSITRKLISLMGGKIYLK 602 Query: 776 SSDEGVTTINCRIP 789 S T + IP Sbjct: 603 SQLGRGTILQFHIP 616 >gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 587 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 20/267 (7%) Query: 542 FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 F + + A L ++ EA R+ A +K+ F+ +VS+E+R+PL +IGF L+ Sbjct: 308 FADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLI-LE 366 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 + +Q Q+ S LLN++NDILD+A ++AG M+L S + LN+L +V+ Sbjct: 367 GMADDPEEQHQFTSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPVKLNELFEDVENF 426 Query: 658 IATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------ 709 + + N+ R+ ++ + QRLLQ+ + +NA+ F+ +G + Sbjct: 427 LRPQAESRNLSFRMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQEGGITVSADLVL 486 Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 + + G V + G + D +F F V + Q G GLGL+I + Sbjct: 487 KQVEFQKQQFPGMVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQK 546 Query: 764 FINLHGGHVSISSSDEGV-TTINCRIP 789 I GG V S EG+ +T+ +P Sbjct: 547 LIEAMGGEVHFYSLGEGLGSTVTFTVP 573 >gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] Length = 760 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T RAE +L E A + K+ F+ VS+E+R+P+ I+G LL + SL+ Sbjct: 228 DITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLS 284 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q YV IS S++ LL L+ D+LD + ++AG + + ++ + + + +A + Sbjct: 285 PEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAF 344 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720 +I + + + + AD R+ Q+ ++ NA+ F+ G + I +A + D I Sbjct: 345 AKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFTDGGGVLVSIARARSETSDRI 404 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F++ + G + E+ + +F F R G GLGL+I + + GG +S+SS Sbjct: 405 CFTITDTGPGLREEDMERIFEEFEQADGTSTRAHGGAGLGLAISKRLVAAMGGTISVSS 463 >gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1] gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y4.1MC1] Length = 744 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 128/549 (23%), Positives = 228/549 (41%), Gaps = 86/549 (15%) Query: 272 GNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQN 325 G K +++ N + +AI DV++ + +L + E I AI I+D Sbjct: 234 GTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDR 293 Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL-RSANKLPEQLNWKTWKENIFSVYKS 384 Y+ NR+ +E+ L L LL+FL R K+ + +F+ ++ Sbjct: 294 GYILNANRAASRTFELPLNLLVRK----NLLDFLDRDDEKV----------QRVFAQFRK 339 Query: 385 SETHKD--TWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439 + +D T+H+PNG+ + T G + +F N+T + +E + + Sbjct: 340 TGEIRDELTFHMPNGEDKQLEFTMKQGAIDGYHLTIFRNVTERRKMEKELRESEQKFRSI 399 Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGT---------HIRNIAATCS 488 DH G+ ++G D RI NP ++ + +L P T H + C Sbjct: 400 FDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRPITAFIPEKARKHFDKLIQQCD 459 Query: 489 R---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545 R Y E D F++ G + + + L+ IIP M+ ++ Sbjct: 460 RCGEAYAEMD----FSS-------------GEKQKIVEFALKKEIIP---GVGMIMLRDI 499 Query: 546 TDSVRAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 T+ R E L LRK+D + +++E+R+P+T + GF LL+ GS+ Sbjct: 500 TE--RKELELQ-----LRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQ----GSIK 548 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S Y I + + +++ + L LA A + N ++ D ++ + S MH Sbjct: 549 EDYSMYFNVIMSELKRIESIITEFLVLAKPQAIQYQQNDVCKIMQDTIDLI--SAQAMMH 606 Query: 664 ENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI 720 +++++D L + +L Q+F IL NA++ KG V ++ R D+ Sbjct: 607 ----NVQIVADFALPIPCIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIR 662 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 S+ + G IP+D K + F + + RG GLGL + I H G + + S Sbjct: 663 ISITDQGCGIPQDKIKKLGEPFYTT----KERGTGLGLMVSYKIIEEHQGKIDVESEVGV 718 Query: 781 VTTINCRIP 789 TT + +P Sbjct: 719 GTTFHITLP 727 >gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter crescentus NA1000] gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter crescentus NA1000] Length = 690 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 11/229 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN F+ ++S+E+R+PL +I L + L SKQ++ V I S L LV+DIL Sbjct: 321 KNDFLANMSHEIRTPLNGVIALAAALDETP---LTSKQAEMVAMIRRSGETLERLVSDIL 377 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D++ ++AG M L L L++ + + E + +++ S G F+ D R+ Sbjct: 378 DVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRAKEKGVAVRLERSPTAAGGFLGDSVRI 437 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742 Q+ S + SNA+ F+ +G ++ + G+ V++ G + + +F RF Sbjct: 438 GQVLSNLFSNAVKFTDQGEVIVRVDVEEAGNGQAARLFVEVEDTGVGFDAEKAEMIFQRF 497 Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGLSI ++ + + GG ++ SS + +P Sbjct: 498 NQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQSSPGAGSLFRVTLP 546 >gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex domain structure [Aromatoleum aromaticum EbN1] Length = 1519 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 ALT E +A K++F+ +S+E+R+P+ ++G ++L + SL+ Q+ V I Sbjct: 851 ALTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLART---SLSEHQADLVATI 907 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 SS+ LL +++DILD + ++AG +KL+ + + DL+ + S+ ++ + V Sbjct: 908 CGSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLPLAARLDVDLSVFV 967 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKN 725 ++ V AD RL Q+ ++ NA+ FS+ V + A S+ + Sbjct: 968 SPEVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVADVVPLQLAVSIVD 1027 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG I + + +FN F RR G GLGL+I ++L G + + S +T Sbjct: 1028 NGIGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEGGIKVRSEPGQGST 1087 Query: 784 INCRIP 789 IP Sbjct: 1088 FTVTIP 1093 >gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] Length = 1824 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 137/263 (52%), Gaps = 19/263 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T +R + EK EA +A++ K++FV VS+E+R+PL+ +IG +DLL + Sbjct: 1113 TLRDMTSRKDMQRLIFEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 1168 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ +Q YV+ I SS LL ++NDILD + +++ +K+ + + V ++ Sbjct: 1169 NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSV 1228 Query: 661 KMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKA 712 + E +I ++V + F D R+ Q+ +LSNA+ F+S+G + + Sbjct: 1229 AANDEVDILLRVPPNVPKIVF-GDAMRIRQVLLNLLSNAIKFTSRGHILTDISVDESVPT 1287 Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-N 766 + D I ++++ G IP+ + S+F F + R+ G GLGLSI + I Sbjct: 1288 SNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRLIEE 1347 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 + GG + +SS +T C IP Sbjct: 1348 VMGGTIQVSSIVNQGSTFKCIIP 1370 >gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] Length = 981 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 132/240 (55%), Gaps = 11/240 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +AL + +E+ +A++ K+ F+ +S+++R+P+ IIG T++ + + + +K + Sbjct: 455 QALKDASESANQANKSKSEFLSSMSHDIRTPMNGIIGMTEIARVNIQDT--AKVQDCLHK 512 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I+ SS +LL+L+N++LD++ +++G + LN + +L+ + ++ + E N + V Sbjct: 513 ITMSSNLLLDLINEVLDMSKIESGRLALNEREFNIAELVETLFTAVQPLLKEKNHTLNVH 572 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD----FIFSVKN 725 I+D F+ D RL QIF ++SNA+ ++ +G + + DN F F +++ Sbjct: 573 INDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEGGNIDFSISEFHDNSPAYSKFQFILRD 632 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 NG + + + +F F A + G GLG++I + +++ GG ++++S TT Sbjct: 633 NGMGMTPEFLERLFLPFERADEARQKNIAGTGLGMAITRNIVHMLGGDITVASEPGKGTT 692 >gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] Length = 934 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT +LKT L++ Q Y+ I S+ LL Sbjct: 281 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTP----LSATQIDYLHTIERSANNLL 336 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +++ND+LD + ++AG + L + +L + ++EV +A H+ + + + + + Sbjct: 337 SIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 396 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL Q+ + +L NA+ F+ KG+ I R + V + G I E Sbjct: 397 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDTGIGISERQQS 456 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +F F RR G GLGL I + IN GG ++ S +T Sbjct: 457 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGST 505 >gi|237807392|ref|YP_002891832.1| aerobic respiration control sensor protein ArcB [Tolumonas auensis DSM 9187] gi|237499653|gb|ACQ92246.1| multi-sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 782 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 17/235 (7%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE + L KA + K +F+ +S+ELR+PL ++G + +L + LN Q QY Sbjct: 264 RDITEHKRYQDELEKASQDKTTFISTISHELRTPLNGVVGLSHILLDT---PLNDLQRQY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIR 668 + I S+ L N+ NDI+DL ++ +K+ S I L LL+++ Q+++T M E + Sbjct: 321 LNTIHLSAVTLGNIFNDIIDLDKIERRRLKIANSKIDLRLLLSDL-QTLSTLMVEAKGLY 379 Query: 669 IKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSV 723 + DG + + VAD RL QI +LSNA+ F+++G + +A + F + Sbjct: 380 LHFDIDGDVPHWIVADGTRLRQILWNVLSNAVKFTAEGGITFGVQVSPSAENKVHLRFDI 439 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++ G IPE +++F + G RR G G+GL+I + ++ G + + S Sbjct: 440 EDTGIGIPEHEQENIFAMYYQVP--GTRRAVGTGIGLAITKQLVDAMDGMIHVDS 492 >gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 778 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37] gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory domains [Psychromonas ingrahamii 37] Length = 1255 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 124/253 (49%), Gaps = 10/253 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ RA++AL KA+ K+ F+ +S+E+R+P+ +IG D+L+ S SL Sbjct: 598 DITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEIRTPMNGVIGMVDVLQQS---SLK 654 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V+ I S+ LL+++ DILD + ++AG + + Y+ + + +++ + +A Sbjct: 655 GFQVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDIEYAPMAVAEVVEKACFMLAHLAE 714 Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGD 718 + + + + +D + + D RL QI + +NA+ FSS G + D Sbjct: 715 KKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAIKFSSGSDRPGRVSVQALMTDPTM 774 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 V +NG + E +F F RR G GLG++I + + L GG +++ S Sbjct: 775 LEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGGTGLGITIARNLVQLMGGEITVQS 834 Query: 777 SDEGVTTINCRIP 789 + + + +P Sbjct: 835 TLNKGSIFSVHLP 847 >gi|297243685|ref|ZP_06927616.1| signal transduction histidine kinase [Gardnerella vaginalis AMD] gi|296888436|gb|EFH27177.1| signal transduction histidine kinase [Gardnerella vaginalis AMD] Length = 391 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A E E L AD+++ + +VS+ELR+P++ +L+ G ++ S +E I Sbjct: 149 AFNEMAEELEHADQMRRELIANVSHELRTPVS---ALQAMLENLADGVVDPTPSN-MEAI 204 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671 + L +L+ +LDL+ V+AG LN ++ D ++E+ + IA H +NI +++ Sbjct: 205 LNQTHRLADLITFLLDLSRVEAGAESLNITSFNFTDFIDEIIEPLEIADSGHNHNIEVQI 264 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729 + +L D+ RL Q+F+ I+SNA+ S G+ V++ A + I +V N G Sbjct: 265 NDEIEL---TGDQARLSQLFTNIISNALKHSDDGTRVLISAHINHNQNSVICNVVNFGEQ 321 Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ +F RFV R + G GLGLSI LH G V + G Sbjct: 322 IPQEDRADIFRRFVKGNQRIGTESGGTGLGLSIARWAAQLHHGTVKVVDDKRG 374 >gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC BAA-895] gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN+ Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNTTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG--DFIFSVKNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N +++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEIQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp. carotovorum] Length = 929 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN+ Q+ Y+ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L++ L++V +A HE + + + I + F Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I ++ R + +++ G I E Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDTGIGIAELQQS 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 462 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 503 >gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 1741 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 2/251 (0%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++TD + E L E ++ E+K+ FV S+E R+PL+ I+ ++LL+ + Sbjct: 1492 LIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKW 1551 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 KQ ++ I + + ++NDIL + +AG ++ + + + + I + Sbjct: 1552 TEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNLVEEI--Q 1609 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721 ++ NN ++ IS+ + S D + L I ++SNA+ +S S V +K + +F Sbjct: 1610 LNLNNKQVDFISEYQSMSCCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYCRDQCAVF 1669 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V + G IP + +F F + G G GLGL+IV+ +++H G +S+SS+ E Sbjct: 1670 EVHDWGIGIPAEDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDVHEGEISVSSNSEIG 1729 Query: 782 TTINCRIPSKE 792 T IP K+ Sbjct: 1730 TLFTVNIPLKQ 1740 >gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus bovienii SS-2004] gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus bovienii SS-2004] Length = 921 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 137/251 (54%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+++ V+ E++L E A +A++ K+ F+ VS+ELR+PL IIG +LL++ + Sbjct: 420 LVDISTRVKMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSH---T 476 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L S+ ++ + ++ +S++LL +++DILD + +++ +K++ +++ V + Sbjct: 477 LPSESARLLSAMNNASSLLLKIISDILDFSKIESKQLKIDSKKFSCKEIVLHVISNYLPL 536 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + + + D RL QI S +L+NA+ F+ GS VI + + + +I Sbjct: 537 IVKKELGLYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVVITISIKHSYLYI 596 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778 S+K+ G I + + +F F NA++ +G GLGL+I E INL G + S Sbjct: 597 -SIKDTGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLINLMDGDIEFISQQ 655 Query: 779 EGVTTINCRIP 789 + + R+P Sbjct: 656 YIGSIFSIRLP 666 >gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60] Length = 919 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 12/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT ++KT L++ Q Y+ I S+ LL Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTP----LSATQIDYLHTIERSANNLL 337 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L + +L + ++EV +A H+ + + + + + Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 397 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 + D RL Q+ + +L NA+ F+ KG+ I R + V + G I E Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDTGIGISERQQS 457 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +F F RR G GLGL I + IN GG ++ S +T Sbjct: 458 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGST 506 >gi|251780024|ref|ZP_04822944.1| sensory transduction histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084339|gb|EES50229.1| sensory transduction histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 664 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 16/258 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596 TF+ + L +N+ L A + +K F ++S+E ++PL I+ L+++ Sbjct: 371 TFIMTGKDITNYNKLALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESY 430 Query: 597 -SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 K + KQS +YV + +S LL LVN+++D+ +D G K+N + +++ E Sbjct: 431 IKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEE 490 Query: 654 VKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S+A TK E NI +D + D +++ +I ++SNA+ ++ K + + Sbjct: 491 IVLSVAEYTKNKERNIIFD--TDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVN 548 Query: 712 AARD--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 + + + + I SVK+NG IP++ + +F RF V N+ G G+GLS+V+S + + Sbjct: 549 ISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEM 608 Query: 768 HGGHVSISS-SDEGVTTI 784 H G + I+S SDEG I Sbjct: 609 HEGKIWINSESDEGTEII 626 >gi|297564622|ref|YP_003683594.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849071|gb|ADH62086.1| integral membrane sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 365 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL K ++ + + V++ELR+PL + G+ + L G L +Q+ + I+ Sbjct: 131 EALEKVEQSRVELIGSVAHELRTPLAGLQGYAEALAD---GVLPPEQAAH--RIAHEVRA 185 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+ ++ V+AG +++ + + L + + E + +++ +L Sbjct: 186 MRRLVEDLSLVSRVEAGAVEIRPQPLDPAEALRQAAERFELVFAEQGVALRLDVPPRLPP 245 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +RL Q+ S +L+NA+ + G V+L+A FSV++ G IP + VF Sbjct: 246 VWADLERLQQVLSNLLANALRHTPSGGEVVLQAGLVPSGVCFSVRDTGPGIPPEHQARVF 305 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V +A Q G G+GL+I + + GG + + S Sbjct: 306 ERFYRVDSARSRQDGGSGVGLTIAKGLVEAMGGTMGLRS 344 >gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 472 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613 L + EAL + + K F V++ELR+PL IIGF +L+K LGS+ NS+ +Y + I Sbjct: 223 LQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNSQYKEYADDI 282 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + T LL L+ND+LD + ++ + + LN +++ + K+ E I +K Sbjct: 283 YNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIVDSCINMLLPKLRETEINLKKEI 342 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIP 731 K +AD +R+ Q+ +LSN++ F+ KG + ++K + +NG I Sbjct: 343 PNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIRMVVKENIEKNLLTIEFHDNGIGIM 402 Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 + V + F A G R G G+GL + + + L GG I S + TTI Sbjct: 403 QQDIYKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFDIKSEAKLGTTI 455 >gi|254507496|ref|ZP_05119630.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219549566|gb|EED26557.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 787 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L +Q + Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LTEEQRHH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L S + + + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELYPSALNFENFVAEIESISALMATQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725 + L S + D RL Q+ ++SNAM F+ +G V+ +A F V++ Sbjct: 381 DLERLSSLPSEIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAEMEDAFATITMEVED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +G IPE + +F + S G G+GL++ + IN+ G +++ +S+EG Sbjct: 441 SGIGIPEAELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|222529444|ref|YP_002573326.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] gi|222456291|gb|ACM60553.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725] Length = 467 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 IP+PN +++ + + +TEK E L + ++ SF+ +VS+ELRSPLT+I GF Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 + + + + K+ Y+ + L NL+N +L+L+ ++ G + LN S + + Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + E ++ E I + + D +L AD+ + ++ +L NA+ ++ G + + Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADKDLISRVVHNLLDNAIKYNKVGGKIYI 385 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769 + NG ++++ G IPE + K ++ RF + R GVGLGLSIV+ I LH Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445 Query: 770 GHVSISSSDEGV 781 ++ + S+EGV Sbjct: 446 QNIWV-ESEEGV 456 >gi|188590708|ref|YP_001921035.1| sensory transduction histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188500989|gb|ACD54125.1| sensory transduction histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 664 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 16/258 (6%) Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596 TF+ + L +N+ L A + +K F ++S+E ++PL I+ L+++ Sbjct: 371 TFIMTGKDITNYNELALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESY 430 Query: 597 -SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 K + KQS +YV + +S LL LVN+++D+ +D G K+N + +++ E Sbjct: 431 IKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEE 490 Query: 654 VKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S+A TK E NI +D + D +++ +I ++SNA+ ++ K + + Sbjct: 491 IVLSVAEYTKNKERNIIFD--TDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVN 548 Query: 712 AARD--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767 + + + + I SVK+NG IP++ + +F RF V N+ G G+GLS+V+S + + Sbjct: 549 ISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEM 608 Query: 768 HGGHVSISS-SDEGVTTI 784 H G + I+S SDEG I Sbjct: 609 HEGKIWINSESDEGTEII 626 >gi|160935145|ref|ZP_02082528.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC BAA-613] gi|158441876|gb|EDP19573.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC BAA-613] Length = 493 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624 + +K++ ++ +S++LR+PLT I G L LG ++ ++ I + S L +V Sbjct: 263 ERLKSTLLRSISHDLRTPLTGITGSAGFL-LDNLGIMDEATIKSMLKDICSDSEWLSTMV 321 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 ++L+L + G + +N V++DL+ + ++ ++ + ++++ D L S D Sbjct: 322 ENLLNLTRIQEGRLDINKKKEVVDDLVASAVRLVSNRVGNHTLKMETPEDILLVS--VDG 379 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744 + +Q+ +L NA S G+TV L+ +D F V +NG IP D +F+ F + Sbjct: 380 RLFIQVLVNLLDNAFRHSGTGTTVTLRVKQDGNCLKFVVSDNGIGIPNDKIDKIFDNFFT 439 Query: 745 NAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 A+ ++RGVGLGL+I ++ + GG + +S +G +P ++ Sbjct: 440 TAYENGDKQRGVGLGLTICKAMVEAQGGTIRAFNSPQGGAVFEVAMPMED 489 >gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] Length = 1301 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 12/219 (5%) Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626 + K F+ +S+E+R+PL I+G T + + + + + ++ + S+ L++L+ND Sbjct: 927 QAKTDFLSRMSHEIRTPLNAIVGMTSIARN--VADDRDRVLECLDKLETSNQYLISLIND 984 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685 ILD++ +++G M+LN + + D + ++ + + + +R V + G + V DR Sbjct: 985 ILDMSRIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQGLALVTDRL 1044 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFN 740 RL Q+ I+ NA+ F+ +G VI + G FSVK+ G I + S+FN Sbjct: 1045 RLEQVLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIASEAMDSIFN 1104 Query: 741 RFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776 F A + + G GLGL+I + + GG + + S Sbjct: 1105 AF-EQAEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRS 1142 >gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|325958983|ref|YP_004290449.1| PAS/PAC sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] gi|325330415|gb|ADZ09477.1| PAS/PAC sensor signal transduction histidine kinase [Methanobacterium sp. AL-21] Length = 769 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 6/255 (2%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q + F +++ VR E L E L+ + F S++L+ PL I F LL+ Sbjct: 519 QFAVIFNDISQRVRIENELKETLRQLKLTNSELKQFAYIASHDLKEPLRVITSFLQLLQR 578 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L+ +++ + + L L++D+L+ + ++ ++ + D+L V+ Sbjct: 579 RYKDQLDEDADEFINFAVDGAIHLHELIDDLLEYSKINT--RSDEFTCVDFEDVLKIVET 636 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 ++ + ENN+ I+ GKL AD+ +++Q+F +++N++ + S S I +A +N Sbjct: 637 NLDILIKENNV---FITSGKLPKIRADKTQMIQLFQNLINNSIKYRSVKSPEIHISATNN 693 Query: 717 GD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 GD +IFSV++NG IP K +F F + G G+GL+I + + HGG + + Sbjct: 694 GDKWIFSVEDNGIGIPSKYSKQIFKIFKRLHDSYEYNGTGIGLAISKRIVEKHGGTIWVD 753 Query: 776 SSDEGVTTINCRIPS 790 + T N I S Sbjct: 754 TERINGTKFNFTIRS 768 >gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 834 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 12/253 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T+ ++++AL E + K+ F+ ++S+E+R+P+ +IG ++L L S + Sbjct: 429 DITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMNAVIGLSEL----ALDSTD 484 Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + Q +++ I+ SS L+ ++NDILDL+ ++A + + L +LL+ +++ Sbjct: 485 PAEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQLSVEKIQFNLTELLDSIQRIFTLSA 544 Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717 +I V+ D + + D RL QI + +L NA F+ KG + ++ D+ Sbjct: 545 AGCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGNAFKFTQKGRVTLNVSKIENTTDST 604 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 FSVK+NG + + ++F F RR G GLGL+I + L GG + + Sbjct: 605 TLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGLGLTISRNLAQLMGGDIKVE 664 Query: 776 SSDEGVTTINCRI 788 S +T + + Sbjct: 665 SQAGAGSTFSVEL 677 >gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286] gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286] Length = 984 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|229178879|ref|ZP_04306239.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|229190641|ref|ZP_04317637.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592774|gb|EEK50597.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228604644|gb|EEK62105.1| Sensor histidine kinase [Bacillus cereus 172560W] Length = 312 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 82 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 201 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311 >gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] Length = 1143 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 10/236 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616 + EAL + D K +F +VS+E R+PLT ++G D L +++ S +E + Sbjct: 344 RAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEDALASAE----RSLSGADLETAHRN 399 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL LVN +LD + ++AG ++ +Y L+ L ++ + + M + +V Sbjct: 400 AVRLLKLVNALLDFSRIEAGRIQASYEPTDLSALTADLASAFRSAMERAGLAFEVDCPAL 459 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735 D +I +LSNA+ F+ +G+ I L+A D D +V++ G+ IPE Sbjct: 460 PEPIYVDHDMWEKIVLNLLSNALKFTFEGTVSISLRAHGDRAD--LTVRDTGTGIPEREL 517 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V A G G+GL++V + LHGG + ++S T+ +P Sbjct: 518 SHLFKRFHRVQGARSRTHEGSGIGLALVHELVRLHGGTIHVTSELSVGTSFTVSLP 573 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 113/236 (47%), Gaps = 15/236 (6%) Query: 539 MLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 M+ +TD V A R + + ++ AL K ++ + F S++L++PL I + Sbjct: 885 MVVAFEITDQVLARRRIEQLSQHREELIAALAKTNQELDQFAYVASHDLKAPLRGIANLS 944 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 + ++ S G L+ + +++ + L L++ IL + AG ++ + ++ LL Sbjct: 945 EWIEESLAGKLDGETQEHIHLLRGRVRRLEALIDGILHYSR--AGRLRGDVVSVDTGHLL 1002 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 EV + ++ R+ + + + A+R + Q+F ++SNA+ + + + Sbjct: 1003 AEVVELLSPP---EGARVDIAP--GMPTIAAERVPMQQVFQNLISNALKHARRSDARVEV 1057 Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766 D G ++ F+V +NG I + + +++ F + R + G G+GLS+V+ + Sbjct: 1058 TCEDAGAYVEFAVSDNGPGIAPEYHERIWDLFHTLESRDKVEGTGIGLSVVKKIVQ 1113 >gi|123475358|ref|XP_001320857.1| ATPase [Trichomonas vaginalis G3] gi|121903671|gb|EAY08634.1| ATPase, putative [Trichomonas vaginalis G3] Length = 1077 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 147/301 (48%), Gaps = 19/301 (6%) Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERAL 555 ++F+A T D +K ++ ++V +SI + + T +L +++T + AE L Sbjct: 536 NVFSAFKTCIAD-KKPFSIDAPVMMNTVRWFSIRGIRSGPTSILLLMIDITATKNAEEHL 594 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 + A K F+ ++S+E+R+PL + G +LL ++ + K S +E +S Sbjct: 595 RIEKARFVDAATAKTRFLANMSHEIRNPLNGMSGLLELLMSTDVV---QKYSDNMEILSD 651 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKV 671 S LL L+NDILDLA ++ M +++ VL D LN+ + A +N I Sbjct: 652 SFQSLLELLNDILDLAKIEQNQMHPSFTDFDPLQVLADSLNKQMKQAA----KNGILFNP 707 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I D KL + V D ++ S ++SNA+ F+ KGS I ++ DN I + + G I Sbjct: 708 IIDPKLATVVHGDPHIFARVASNLVSNAVKFTKKGSITISVSSDDNLKLI--IADTGIGI 765 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 D + +F F+ + R G+G+GL++V + L GH+++ S TT Sbjct: 766 SHDFQQKIFGIFLQGDNSITRSYGGIGVGLALVNKMLQLINGHITLKSDTGRGTTFTITF 825 Query: 789 P 789 P Sbjct: 826 P 826 >gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] Length = 1195 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 13/255 (5%) Query: 537 QTMLTFVNVTDSVR--AERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFT 591 Q + T V + R AE+A A R AD+ K+ ++ +S+ELR+PL +I+G+ Sbjct: 688 QALQTARQVAEQARLAAEQARQVAEAAQRAADQANQAKSRYISAISHELRTPLNSILGYA 747 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L+ L ++ Q V I LL+L+ LD+A +++G + L + + D L Sbjct: 748 QLMSEDP--GLPPQRQQAVHVIRRGGEHLLSLIEGTLDIARIESGKLTLEVAPMRFADGL 805 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVI 709 E+ + + + G L V AD +RL QI +L NA+ F+++G T+ Sbjct: 806 REMASLFELQAAAKGLAFRFEPQGALPEVVRADEKRLRQILINLLGNAIKFTTQGQVTLR 865 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769 ++ AR+ V++ G + + +F F + A G GLGL+I + L G Sbjct: 866 VRHAREMAR--IEVQDTGPGLTASAIERIFEPF-TRAGAADTPGAGLGLTIAKMLTALMG 922 Query: 770 GHVSISSSDEGVTTI 784 G +++ SS GV ++ Sbjct: 923 GELTV-SSQPGVGSV 936 >gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 909 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ K++F+ ++S+E+R+P+ IIG DLL GSLN+ Q + + +S+ LL L Sbjct: 267 QANRAKSAFLANMSHEIRTPMNGIIGVADLLAA---GSLNAHQQNQLTTLRSSADTLLYL 323 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +NDILD + ++AG ++L + + + +V + + ++ + + L + V Sbjct: 324 LNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPTARKRHLDLWFDIEPSLPDYIVG 383 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD-NGD--FIFSVKNNGSSIPEDMCKSV 738 DR RL Q+ + +L+NA+ F+ GS I ++ +D NG + + + G I + Sbjct: 384 DRYRLGQVITNLLNNALKFTESGSVRISCRSQQDKNGQNRLLIEITDTGIGIIAQALADI 443 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ F + RR G GLGL+IV + L G ++ S+ +T + +P Sbjct: 444 FSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEITAKSTPGRGSTFSIDLP 496 >gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297] gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297] Length = 1120 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 VTD+ AL E A+ K+ ++ +S+ELR+PL +I+G+T LL + + Sbjct: 654 QVTDA-----ALQTAKELAENANAAKSRYLSGISHELRTPLQSILGYTQLLNDQPDTTPS 708 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+ + I S L +L+ +LD++ ++AG + L+ +++ +L+ ++ + Sbjct: 709 SRTR--LNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQIADMFRMQAK 766 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 I + G L ++V D +RL QI +LSNA+ ++ G + R F+ Sbjct: 767 AKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYTDDGYVRLTLRYRSQVAE-FT 825 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V++ G I ED + VF+ F V N + G GLGL+IV+ + + GG + +SSS Sbjct: 826 VEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGDIQLSSS 882 >gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio parahaemolyticus K5030] gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio parahaemolyticus K5030] Length = 381 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 11/208 (5%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+P+ N G LL +KL + +Q ++VE I SS L+ +++DILD + V+A Sbjct: 1 MSHEIRTPM-NAYGVASLLSDTKL---DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEA 56 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694 G ++L T LL++V K + N+++ D KL + V D RL Q+ + + Sbjct: 57 GKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNL 116 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750 LSNA+ F+ +G +L + + + I F V ++G I ++ ++VF RF Sbjct: 117 LSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTT 176 Query: 751 RR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGL+I +++ GG + ++S Sbjct: 177 RKYGGTGLGLAICAQLVHIMGGDIKLTS 204 >gi|298245656|ref|ZP_06969462.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297553137|gb|EFH87002.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 737 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + N L + +K++ V VS+E R+ LT+I GF+++L+ ++L S+ +Y I Sbjct: 502 LQKSNVRLELTNRMKSNLVSIVSHEFRTSLTDIQGFSEILQRNELNL--SEVREYATDIR 559 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L++L+ND+LDL ++ ++L+ + + LN L+NE + + ++ R+++ Sbjct: 560 EDAQRLVSLINDMLDLDRLEMDHIQLHLNWLDLNALINEAVARMRRRTQKHTFRLQLAR- 618 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L DR++L+ + +L NA+ +S G + + + ++ SV + G IP + Sbjct: 619 -ALPILWGDREKLMIVLINLLDNAIKYSPDGGAITVVSELEDLCVHISVSDQGVGIPPEE 677 Query: 735 CKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777 + VF R+ + G GLGLSIV I LHGG V + S+ Sbjct: 678 LEHVFERYKRLPFGPETVEGRGLGLSIVREIILLHGGKVWVESA 721 >gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 778 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|163794214|ref|ZP_02188186.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] gi|159180382|gb|EDP64903.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] Length = 517 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 16/238 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILL 621 A+ K F++ +S+ELR+PL IIGF DL++T LG + + +Y+E+ I S LL Sbjct: 264 ANTSKTQFLRSMSHELRTPLNAIIGFADLMRTGILGPM--EHPRYLEFTHDIHDSGRHLL 321 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +++D+LD+A ++ G L + L+ L+++ +++ E + + + + Sbjct: 322 KIIDDLLDIARIEVGQETLREEAVDLDALVSDCHRTVGPMAIERGLSLHIDATAPGLVLR 381 Query: 682 ADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDN----GDFIFSVKNNGSSIPED- 733 DR ++ Q+ +LSNA+ + +G S+ + ++ D GD V + G + + Sbjct: 382 IDRTKIKQVLLNLLSNAIKNTPRGGRVSSAVERSPTDGAGSTGDVELRVTDTGRGMTAEQ 441 Query: 734 --MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 M + F R + Q +G GLGL + + LHGG +++ S T + R+P Sbjct: 442 IPMALTAFTRLDDDPMLPQ-KGTGLGLPLSRMMVELHGGALTLESEIGRGTQVTVRLP 498 >gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 914 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 10/213 (4%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ I+GF+ L +L K Y+E I S+ LL ++NDILD + Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDEL---PPKPRDYLEKIDQSAHSLLKIINDILDFS 346 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQI 690 ++AG + + L+++L+ V Q +A + E + + + + + D RL Q+ Sbjct: 347 KIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQV 406 Query: 691 FSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 + +NA+ F+ +G V+ + D + F++K++G + E+ +F F Sbjct: 407 LINLTNNAVKFTEQGEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQAD 466 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 R G GLGLSIV + GG V +SS+ Sbjct: 467 DSTTRSYGGTGLGLSIVRRLVESMGGEVEVSST 499 >gi|300788745|ref|YP_003769036.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|15011030|gb|AAK77358.1|AF331073_2 histidine kinase [Amycolatopsis mediterranei U32] gi|7340668|emb|CAB83037.1| putative histidine kinase [Amycolatopsis mediterranei] gi|299798259|gb|ADJ48634.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] Length = 472 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 17/236 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E L D + FV V+++LR+PL ++I D L ++ + +++ + Sbjct: 247 LGESIEELHAKDRQQRRFVADVAHDLRTPLASMIATVDTLDHAE----PATRTRAAAILG 302 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L LV D+L++A DAG L + + L DL +A + V + Sbjct: 303 TQARRLAKLVEDLLEIARFDAGKADLRVAPVDLADL-------VADAAEVTGVEAAVTAS 355 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G + + VAD +R+ + + +LSNA + TV L D D + V + G +PED+ Sbjct: 356 GDV-TVVADPRRVHTVVANLLSNAAPHGAMPVTVTLDGTGD--DVVVRVADAGPGVPEDL 412 Query: 735 CKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+RF H R G GLGL+I + HGG S++ ++G R+P Sbjct: 413 LPVLFDRFTRGDHARQATEGSGLGLAIARENVLAHGG--SLAVHNDGGAVFTVRLP 466 >gi|318061733|ref|ZP_07980454.1| two-component system sensor kinase [Streptomyces sp. SA3_actG] Length = 391 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%) Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R++ +D + A I T ++ L G E+L + +Y + P P + V++ D+ Sbjct: 99 RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 154 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R TE++ A + V++ELRSPLT++ GFT L +K N Q + Sbjct: 155 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 202 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666 +E + A + + L+ ++LD++ +DAG M+L + + V+ IA + Sbjct: 203 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRPCDR 262 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721 + V L + AD ++ Q+ S +L NA+ G TV + A G + Sbjct: 263 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 318 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V + G IPE+ VF RF + RG G GLGL IV+ + +HGG +++ + G Sbjct: 319 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 375 Query: 782 TTINCRIP 789 +P Sbjct: 376 ARFRFMLP 383 >gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] Length = 438 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 5/210 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 + F+ +++ELR+PLT I G+TD+L L + +Y+ I + L L+ D+ Sbjct: 208 RKEFLSSIAHELRTPLTFIKGYTDILAKRDLTE--QDRQKYLAIIIEETNRLSRLIKDLF 265 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA +D + + L +++ ++ + I + V D L + AD RL Sbjct: 266 DLAKMDENSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRCDSGL-TLYADEARLE 324 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 QI +L+NA+ + + G + +D+G +V++ G IP+ +F+RF V + Sbjct: 325 QILINLLNNALIYCAPGDMTTVTVKKDSGTLSITVEDTGKGIPKKDLPYIFDRFYRVEKS 384 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G GLGL+IV+ + HGG + + S Sbjct: 385 RSRALGGSGLGLAIVKELVQAHGGEIKVRS 414 >gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L + EA K++F+ + S+E+R+P+ IIG +LL ++ L+ KQ ++ Sbjct: 356 RMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTR---LSDKQLEF 412 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S+ L+ ++NDILD + +DAG L L +LN + + + + + Sbjct: 413 VRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVEL 472 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724 ++ + F+ D RL Q+ + ++ NA+ F+ +G + + D +I FSVK Sbjct: 473 ILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIRFSVK 532 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G + + +F F RR G GLGL+I I L GG +S+ S Sbjct: 533 DTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVES 586 >gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 896 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|167894658|ref|ZP_02482060.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 7894] gi|167911299|ref|ZP_02498390.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 112] Length = 351 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|126348165|emb|CAJ89886.1| putative two-component system sensor kinase [Streptomyces ambofaciens ATCC 23877] Length = 503 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 9/232 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR+ + F VS+ELR+PL + TD+L G L+ + V IS +T L Sbjct: 258 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDDDTAMAVRLISEETTKLA 316 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV+D+++++ DAG L+ I DL +++++A++ + + + G L V Sbjct: 317 GLVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLASRGWLDTVETDLPEPGTLRGRV 373 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738 D +RL + + +++NA+ + + L+ R + +V + G+ IP+D+ V Sbjct: 374 -DPRRLDVVVANLVANALRHGAPPVRLSLRQEDDPRAGRRAVVTVADGGAGIPDDVLPHV 432 Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+RF S++ R + G GLGL+I + LHGG V ++ G +P Sbjct: 433 FDRFYKSDSARTRSEGSGLGLAITTENVALHGGTVRAANHPRGGAVFTVVLP 484 >gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] Length = 896 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMATSMQQNFLHIAAQKNVEFTVENS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] Length = 1040 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 10/254 (3%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 ++++T+ + L + A+ K++F+ +S+E+R+P+ I+G +L K Sbjct: 619 WIDMTERQQMVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDK--R 676 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L VE S+ L+ L++DILD + ++AG L L L+ +V Sbjct: 677 LPDDDRLQVETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSLFGLA 736 Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716 ++++ I D + + D R Q+ + ++SNA+ F+ +GS VI A D Sbjct: 737 ASRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDRGSVVIRLGATNLTPDC 796 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 FSV + G+ IPED K +F F + + R G GLGLSI + + G + I Sbjct: 797 QSLTFSVSDTGTGIPEDGLKKLFQPFTQIGDTKRSA-GGTGLGLSICQRLVTKMHGTIGI 855 Query: 775 SSSDEGVTTINCRI 788 +S TT+ I Sbjct: 856 TSEVGKGTTVTATI 869 >gi|296453866|ref|YP_003661009.1| integral membrane sensor signal transduction histidine kinase [Bifidobacterium longum subsp. longum JDM301] gi|296183297|gb|ADH00179.1| integral membrane sensor signal transduction histidine kinase [Bifidobacterium longum subsp. longum JDM301] Length = 344 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 13/234 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ E L AD+++ + +VS+ELR+P++ + + + + +E Sbjct: 103 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPANLES 158 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670 I + L +L+ +LDL+ ++AG LN D L+E + IA H ++IR+ Sbjct: 159 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 218 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGS 728 V +D S D+ RL Q+F+ I++NA+ S+ G+TV++ A D+ G + +V N GS Sbjct: 219 VPADI---SMEGDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDDSQGTIVTNVVNFGS 275 Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 I +F RFV + G GLGLSI LHGG V + G Sbjct: 276 QIAPSDRSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRG 329 >gi|294495905|ref|YP_003542398.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666904|gb|ADE36753.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 554 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 4/233 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L+ D++K+ F+ ++++EL++PL +I GF+DLL +LG LN Q + + ++ Sbjct: 321 EDLKHLDKLKSEFLANLTHELKTPLISIKGFSDLLDKGRLGELNEDQKKANLAVVRNADR 380 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L++ +L ++ G + + + + +++ + + ++ I + K Sbjct: 381 LKRLIDSLLYMSMEKEGKYQYQFEELDVGEIITDAMDKMKVHTEGKDVDIGIDIQNKSYL 440 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 DR RL +F IL NA F +KGS I ++ ++I +K+NG IP++ + Sbjct: 441 TCGDRDRLTNVFLNILDNASKF-TKGSGRIKITLKEEEEYIRIKIKDNGIGIPKEKIPRI 499 Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ F R GVG+GL I + I++H G + S + TT++ ++P Sbjct: 500 FDMFYQIDGSTTRIYNGVGMGLYICKKVIDIHNGSIWARSMEGLGTTVHVKLP 552 >gi|295690578|ref|YP_003594271.1| response regulator receiver sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295432481|gb|ADG11653.1| response regulator receiver sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 379 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 36/248 (14%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISA 615 +ALR+AD K++F+ +++ELR+P+ + G LLK + + ++ + +++++ Sbjct: 147 QALRRADRHKDNFLAVLAHELRNPVAALGGGLHLLKKDIPPERAHDIRTRMERMLDHLT- 205 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----------KQSIATKMHE 664 +LV+D+LD++ V G + L + I L ++L S T++ E Sbjct: 206 ------HLVDDLLDVSRVSQGKIVLKKARIELGEVLQSAIDASQHNLEAAGHSFVTELPE 259 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 I + DG D RL QI S +L+NA ++ G TV LKA G +V Sbjct: 260 QPIWL----DG-------DHTRLAQIVSNLLNNAAKYTPSGGTVSLKAEASGGWATITVS 308 Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV- 781 + G +P DM +F F H G+ + G+G+GL++V+ ++LHGG ++++S+ E Sbjct: 309 DTGVGVPADMQSRIFEIFAQVEDHLGKAQGGLGIGLALVKQLVSLHGGVITVTSAGENRG 368 Query: 782 TTINCRIP 789 + R+P Sbjct: 369 SAFTVRLP 376 >gi|257468826|ref|ZP_05632920.1| multi-sensor signal transduction histidine kinase [Fusobacterium ulcerans ATCC 49185] Length = 620 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 33/349 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNES 494 ++ +S+G+ V + +I L N A L EE+ L + + R I + + N + Sbjct: 277 VESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIPNRKIYDSITEVKNNN 336 Query: 495 DGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553 D I ++F SL +E + V SII N + + + D + Sbjct: 337 D-------IKSTFKQLEISLNSNVEKNIYCRVFINSIIG-KNKENLGIVTLLQDITK--- 385 Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 L++ D++K+ FV VS+E R+PLT++ +LL +G++N Q + ++ I Sbjct: 386 --------LKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQKELLKVI 437 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-- 671 + L L+ D+LDL+ +++G + + + ++ S+ N++I++ Sbjct: 438 KEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRNVKIEIRN 497 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSS 729 I D L AD ++L + + +L+NA+ + S + +I++A + + + SVK+NG Sbjct: 498 IKDSFL--VFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVKDNGKG 555 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ + +FN+F V ++ G+ G GLGLSI + I HGG + + S Sbjct: 556 IPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDS 604 >gi|212711105|ref|ZP_03319233.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM 30120] gi|212686273|gb|EEB45801.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM 30120] Length = 781 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ EAL A K +F+ +S+ELR+PL I+G + +L +KL +QS Y Sbjct: 264 RDITERKRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTKL---TKEQSSY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ ND++++ ++ ++L+ ++L + +N+++ + ++ Sbjct: 321 LKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVMLPEFVNDLENLSGLLVQPKGLKF 380 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 + ++ G + + D RL QI ++ NA+ F+ KG + + IF VK++G Sbjct: 381 VMDVAHGLPKTILTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWREADNKLIFQVKDSGI 440 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776 IP+D +F + V ++ G+ G G+GLS+ GG + + S Sbjct: 441 GIPKDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIRVES 491 >gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 499 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 IS +S L+ L++D+LDL+ +++ +K ++ L L+ +V++ K + I I+ Sbjct: 316 LISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPI-SEIEIRA 374 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727 + + D RL Q+ S ++NA F+ KG + A D+ D +F V++ G Sbjct: 375 LLPNEDVYINTDATRLKQVISNFINNARKFTEKGY-IHFGYAVDSVDASSVHVF-VEDTG 432 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S IP++ K +F+RF Q G GLGLSI ++ + G +S+ S Sbjct: 433 SGIPKECQKEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVES 479 >gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] Length = 2406 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 22/234 (9%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ YVE I + LL L+ Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1938 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---- 680 NDILD + ++AG MK++ I L + EV +++ E + I D L S Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG--LNTIED--LDSIDPDL 1994 Query: 681 --VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 + D RL QIF +LSN+ F+ GS + ++ V + G I E+ Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S + TT+ Sbjct: 2055 LVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107 >gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1] gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 535 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A E K+ F+ ++S+E+R+PL I GF LL+ ++ + + +Y++ + SS LL + Sbjct: 161 EATEQKSRFLANMSHEIRTPLNAITGFIKLLEENEK---DETKLKYLKIVENSSESLLQI 217 Query: 624 VNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 +NDILD++ +++G +M Y+ DL+ + + T+ E NI ++ + + + Sbjct: 218 INDILDISKIESGNLMIEPYNFNPYEDLIM-IAELFQTRAAEKNIIFQIRYNNNMPKILF 276 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ QIF+ +LSNA+ F+ +GS V NG VK+ G I E K++F Sbjct: 277 GDALRIKQIFTNLLSNAIKFTPEGSVVKCIIWYKNGQLNIRVKDYGIGISEKKQKAIFEP 336 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ R G GLGLSI + GG +++ S E + IP Sbjct: 337 FMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKGSIFTLSIP 386 >gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 592 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 129/245 (52%), Gaps = 6/245 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ L N+ L++ D +KN FV VS+EL++PLT + ++ L+ S+ + + Sbjct: 339 RSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECS--REIKEEM 396 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I + +V+D+LD++ +++G MK + + +++ ++ + +I+I Sbjct: 397 LDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKDKSIKI 456 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728 V + + D+ +L++IF +L+NA+ F+ + V + D+ D++ S+K+NG Sbjct: 457 MVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTV-IVEDHEDYLQTSIKDNGI 515 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 I E+ +F++F R+ G GLGL+I++ I+ GG + + S +T Sbjct: 516 GILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKGSTFTF 575 Query: 787 RIPSK 791 R+P + Sbjct: 576 RLPKE 580 >gi|330910759|gb|EGH39269.1| sensor protein torS [Escherichia coli AA86] Length = 900 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTVL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRIDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRVP 651 >gi|304385328|ref|ZP_07367673.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284] gi|304328535|gb|EFL95756.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284] Length = 480 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 123/239 (51%), Gaps = 6/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E N+ +++ +E + +F+ ++E+R+PLT I G + L+ + + ++S + Sbjct: 240 KSLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGLLEGLEYDAIPEDSKEES--IRL 297 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVND LD + +KL+ + L + V + + K + N ++ V Sbjct: 298 MQRETKRLIRLVNDNLDYERIRTNKIKLDCQMVNLKQAVLRVVEQLGKKAEKENDQLIVE 357 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + + AD RL+QI I+ N + F+ G + +G I + +NG + E Sbjct: 358 MNSDVVVY-ADPDRLIQILFNIVQNGIQFTQNGQITVRAQNASDGTNI-QISDNGIGMTE 415 Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D K+++ R+ ++A R Q +G GLG++IV + +HGG + +SS+ TT P Sbjct: 416 DQIKNIWERYYKADASRIQTKGESGLGMAIVHELVQIHGGKIEVSSAPGRGTTFKLHFP 474 >gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] Length = 2418 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 22/234 (9%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ YVE I + LL L+ Sbjct: 1890 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1946 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---- 680 NDILD + ++AG MK++ I L + EV +++ E + I D L S Sbjct: 1947 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG--LNTIED--LDSIDPDL 2002 Query: 681 --VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 + D RL QIF +LSN+ F+ GS + ++ V + G I E+ Sbjct: 2003 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2062 Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S + TT+ Sbjct: 2063 LVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2115 >gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514] gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514] Length = 2077 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 20/262 (7%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ +A +AL EK + L + K+ F+ ++S+ELR+PL +++ D L + G+L K Sbjct: 1636 TEVEQARQALEEKAKQLALTSKYKSEFLANMSHELRTPLNSLLILADQLAHNVEGNLTPK 1695 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++ + I AS LL+L+NDILDL+ +++G + L+ + +L + V+++ Sbjct: 1696 QIEFSKTIHASGNDLLSLINDILDLSKIESGTVTLDIIEMRFIELQDYVRRTFNHVAESK 1755 Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--------------- 709 ++ V D +L + D QRL Q+ +LSNA F+ +G + Sbjct: 1756 SLEFDVELDSELPRHMLTDSQRLEQVIRNLLSNAFKFTERGGVTLSIALVTEGWSPDRET 1815 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 L AR FSV + G IP + + +F F R+ G GLGL+I L Sbjct: 1816 LNQARSV--IAFSVSDTGIGIPPEKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIARL 1873 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + ++S+ +T +P Sbjct: 1874 LGGEIRLASAIGQGSTFTLYLP 1895 >gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 780 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 11/230 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E E A E K+ F+ +S+ELR+P+ IIG + +L + L+ +++ +E I Sbjct: 261 LVEARERAETALETKSDFLATMSHELRTPMNAIIGMSSVL---QFEDLDESRARQIEVIR 317 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 SS LL+L+NDILD + ++A ++L + L + E A N + V D Sbjct: 318 KSSVNLLDLINDILDFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFD 377 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI-FSVKNNGS 728 L S + D R+ QI +L+NA F+ KG+ + L A R + I SV++ G Sbjct: 378 PTLPSHIKGDVTRVRQILVNLLNNAFKFTKKGTVTMDVFHLPADRRGSERIQISVRDTGI 437 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IPE+ KS+F F R G GLGL+I GG + + S Sbjct: 438 GIPEESLKSIFESFTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVES 487 >gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 530 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K++F+ ++S+ELR+PL IIGF +L ++ + + ++ I S+ LL +++DIL Sbjct: 303 KSTFLANMSHELRTPLNAIIGFAELAESQMGEAEKQRLGSFICDIGESAHHLLRVISDIL 362 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D+A V+AG + L+ S I + +++ + A + + L D + + Sbjct: 363 DVARVEAGKINLHESLIFIPEVIQSAVRLTAPSVTAKQQTVLTSCPDDLPRLKGDERLIK 422 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746 Q+ +++NA F+ + ++A +G S+ +NG I D V F V N Sbjct: 423 QVLLNLVANASKFTQNNGQITIRAELVDGCVRLSIADNGCGIAPDDIAKVLQPFGQVENL 482 Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791 ++ G GLGL + F+ LHGG + + S ++G T I P + Sbjct: 483 LAPKQEGTGLGLPLAREFMELHGGSLDVQSQLNQGTTVILTFPPDR 528 >gi|108761495|ref|YP_631489.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465375|gb|ABF90560.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 530 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 DS R + L L+ ++ + + +VS++L++PLT I + ++ KLG L Q Sbjct: 141 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMMGREKLGPLTDAQ 200 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V+ +S +L +VND+L ++ + +G M+LN L + EV +S+ Sbjct: 201 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRSLGALAEHCK 260 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R+ + ++ FV DR+R+ + ++ N + S TV ++ + ++G + +VK+ Sbjct: 261 VRVVIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 318 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 +G + + + VF+ F A G R G GLGL +V + LHGG + S S EG T Sbjct: 319 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 377 >gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776] gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776] Length = 1322 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ +S+E+R+PL +IG DLLK + SL+ +Q +YV +S+ LL L+NDILD Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKAT---SLDDRQKRYVTICRSSADTLLGLINDILD 667 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLL 688 L+ ++AG M+L L+ L+ ++ + + + + I+ D +RL Sbjct: 668 LSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLR 727 Query: 689 QIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVS 744 QI ++ NA+ F+S G +I A G+ VK+ G I + +F F Sbjct: 728 QILVNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQQQKLFQPFTQ 787 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RR G GLGLSI +L G + I S+ TT +P Sbjct: 788 ADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLP 834 >gi|254994023|ref|ZP_05276213.1| sensor histidine kinase [Listeria monocytogenes FSL J2-064] Length = 459 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612 + T+ L+K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 +S +T L +L +L LA++D + L++ ++ Q E + I + Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 D + D + L Q++S +L+NA+ F+ +G + + V+++G I Sbjct: 340 -DLADVNNTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398 Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 EDM K +F+RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457 >gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 443 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 6/242 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + + E ++ L++A+E++ + V++ELR+PLT + G D + + + + Sbjct: 205 KVAQTFNEMSKQLQQAEEVRRRLMADVAHELRTPLTILRGKLDWFQQQR----RPIEPEK 260 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + + L LV D+ L+ +AG + L + LL ++ + +A E NIRI Sbjct: 261 LLPLQDELIRLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLIERVAPSAEEKNIRI 320 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + + D R+ Q+F +L NA+ ++ +G TV + + +V + G Sbjct: 321 HLTCSTNYTTISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEEPSMLQIAVTDTGIG 380 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + +F+RF A R G GLGL+I F++ HGG + + S+ TT + Sbjct: 381 IAPEHLPFLFHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTIDVHSTPGQGTTFLVK 440 Query: 788 IP 789 +P Sbjct: 441 LP 442 >gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum DSM 4136] Length = 836 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 17/254 (6%) Query: 550 RAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R ++ +++ A R+A+ K F+ ++S+E+R+P+ IIG T LL S L+++Q Sbjct: 289 RKQKVISDSLAAKRQAESGMAAKADFLANMSHEIRTPMNGIIGTTSLLLDS---PLDNEQ 345 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V I S LL+L+NDILD + +++ M L + L L +E A K E Sbjct: 346 MELVRMIRTSGESLLHLINDILDFSKLESARMVLERLPVSLERLFHETMGIFAFKAAEKG 405 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFI 720 + + +S+ D QRL Q+ +++NA+ F+ +G + I++ D ++ Sbjct: 406 VELNYHVSENIPRHITGDFQRLKQVLVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYT 465 Query: 721 F---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 SV++ G I +D +F F R+ G GLGL+I L GG +S++ Sbjct: 466 LLQVSVRDTGIGIAKDKLPLLFQAFTQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVT 525 Query: 776 SSDEGVTTINCRIP 789 S G + +P Sbjct: 526 SELGGGSNFFFEVP 539 >gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R L + EA K++F+ + S+E+R+P+ IIG +LL ++ L+ KQ ++ Sbjct: 356 RMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTR---LSDKQLEF 412 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S+ L+ ++NDILD + +DAG L L +LN + + + + + Sbjct: 413 VRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVEL 472 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724 ++ + F+ D RL Q+ + ++ NA+ F+ +G + + D +I FSVK Sbjct: 473 ILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIRFSVK 532 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G + + +F F RR G GLGL+I I L GG +S+ S Sbjct: 533 DTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVES 586 >gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29] gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29] Length = 883 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++L+ + L+ + + I Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N+ + S Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D I Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWIII 648 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S+ Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 709 EGSTFTVYIPN 719 >gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1125 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVND 626 IK+ F+ VS+ELRSPL I+G++ LLK G+L+ K+++ + I ++ + + L+ D Sbjct: 757 IKDEFLAVVSHELRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIGD 813 Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686 +LD++ + + L+ + + L ++ +++ E +I I+ + V D R Sbjct: 814 LLDISRILRNKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTITP--CTVVGDAVR 871 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 L Q+ +LSNA+ F+ + ++ + D + + V + G I D VF F Sbjct: 872 LQQVVWNLLSNAVKFTPRDGSITVTVTADVSEVVIEVSDTGKGIAADFLPFVFEHFRQEN 931 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + R+ G+GLGL+IV ++LH G V++ S E TT + +P Sbjct: 932 YSTTRKFGGLGLGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLP 977 >gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes 10403S] Length = 591 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 10/236 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 +R + +++ FV +VS+EL++P+T + GF + L G++ + +++ I S Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L L+ DIL L+ ++ + N + ++D++ + ++I E NI++ +I + + S Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474 Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 DR +L QI +LSNA++++ V +K + I V +NG IP Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 534 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 VF RF V A G GLGLSIV+ + GG + + S +E +T +P K Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590 >gi|318077901|ref|ZP_07985233.1| two-component sensor [Streptomyces sp. SA3_actF] Length = 366 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%) Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R++ +D + A I T ++ L G E+L + +Y + P P + V++ D+ Sbjct: 74 RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 129 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R TE++ A + V++ELRSPLT++ GFT L +K N Q + Sbjct: 130 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 177 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666 +E + A + + L+ ++LD++ +DAG M+L + + V+ IA + Sbjct: 178 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRPCDR 237 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721 + V L + AD ++ Q+ S +L NA+ G TV + A G + Sbjct: 238 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 293 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V + G IPE+ VF RF + RG G GLGL IV+ + +HGG +++ + G Sbjct: 294 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 350 Query: 782 TTINCRIP 789 +P Sbjct: 351 ARFRFMLP 358 >gi|301309590|ref|ZP_07215532.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300832679|gb|EFK63307.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 638 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIF 721 E I K +D++RL Q IL NA+ F+S G I N D Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSTNAQDVRL 571 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628 Query: 781 VTTINCRI 788 CRI Sbjct: 629 ----GCRI 632 >gi|307726955|ref|YP_003910168.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307587480|gb|ADN60877.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 882 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 5/232 (2%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 ALR+ D K+ F+ +++ELR+PL + LL+ K + K + V +S + Sbjct: 500 ALRETDRRKDEFLAMLAHELRNPLAPMRNAIALLRREKEAGM--KSCELVGMLSRQVDHM 557 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 LV+D+L+++ + G + L ++L + +++++ + + V Sbjct: 558 AQLVDDLLEVSRITHGRIVLRREPVLLGTAVYGALETVSSMAASRSQHLTVTLPPAPVWL 617 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD RL QI +L+NA ++ G +V + A D ++++NGS I D+ +F+ Sbjct: 618 HADPLRLSQILVNVLNNACKYTDPGGSVCVTALADERFATVTIEDNGSGISSDLLPHIFD 677 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 F R G+G+GLS+V+ + LHGG + I+S G T++ R+P Sbjct: 678 LFAQGERTLDRAHGGLGIGLSLVKKLVELHGGGIDIASPGPGRGATVSIRLP 729 >gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 631 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K SF+ +S+E+R+P+ I+G T+L + L +Q +Y+ ++ +S L+ ++ Sbjct: 255 AARAKTSFLATMSHEIRTPMNGILGMTELTLAT---DLTEEQREYLTWVKSSGDNLMRVL 311 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683 NDILD + ++AG + L + + L+ LL+ V ++ +R+ +D +L + D Sbjct: 312 NDILDFSKINAGELNLEHIPLDLSSLLDSVVALYSSVAANKGLRLYWAADTELPEHLLGD 371 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI---FSVKNNGSSIPEDMCKS 737 R+ Q+ + +LSNA+ F+ G I + +N F+V + G IP + Sbjct: 372 PVRIQQVLNNLLSNALKFTEHGEVAIRVHCEKTLENSKVWRVHFTVADTGIGIPASKLGN 431 Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 +F+ F R+ G GLGLSIVE + L G + + S+ Sbjct: 432 IFDPFAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESA 473 >gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1055 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA +L +A A+ K+ F+ ++S+ELR+PL ++G LL L+ ++ Y Sbjct: 629 RAMVSLRRAKDAAEAANRSKDEFLANMSHELRTPLNGVLGMLQLLDGP---DLSDERRGY 685 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + S LL +++D+LD++ + AG L +L +V + + + + Sbjct: 686 LRTAVESGHALLRIIDDLLDISALGAGGSGLRDEPFDPAAVLRQVAEMVDPAARRRGLAL 745 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +I+D D RL Q+ +++N + F+ +G IL +F+V++ G Sbjct: 746 GLIADALPLRVRGDAARLRQVLYNLVANGVKFTHQGGVDILACPVGGDRLLFTVRDTGIG 805 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786 IPE+ V F RR G GLGL IV + GG +++ S+EGV T+++ Sbjct: 806 IPEEKLPVVCEPFAQVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTM-ESEEGVGTSVHV 864 Query: 787 RIPSKE 792 +P E Sbjct: 865 CLPLPE 870 >gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] Length = 373 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EAL + ++ + + V++ELR+PL+ + + + L + + + E I Sbjct: 138 EALERVEQSRVELIGTVAHELRTPLSALQAYAEALADGVM-----EPEKAAERIQQEVRA 192 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + LV D+ ++ V++G ++L+ + +LL + + + ++V + L Sbjct: 193 MSRLVRDLSLVSQVESGAVELHPGPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPR 252 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +R LQ+ + +LSNA+ + +G V L A R +FSV++ G IPE+ +F Sbjct: 253 VWADAERTLQVLANLLSNALRHTPEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIF 312 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF + + Q G G+GL+I +S + GG + + S Sbjct: 313 ERFYRIDPSRSRQDGGTGVGLTIAKSLVEAMGGRIWVES 351 >gi|301308442|ref|ZP_07214396.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833912|gb|EFK64528.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 287 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 126/229 (55%), Gaps = 12/229 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +R ERA EK E +AD +K++F+ ++++E+R+PL I+GF+ +L + + Sbjct: 50 GLRLERA-KEKAE---EADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE---DRETRL 102 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 ++ I +++ +L L+ D+LDL+ +++ M L Y + + L+ E+ I +M + I Sbjct: 103 EFSNIIQSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRM-PSGI 161 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++ ++D + AD+ RL QI + +L+N++ + KG + R F V+++G Sbjct: 162 ELR-LNDCEALVMEADKNRLTQILTNLLTNSIKHTEKG-FIRFGYKRTAASVEFFVEDSG 219 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP D S+F+RFV +GVGLGL+I + GG + ++S Sbjct: 220 EGIPRDKIDSIFSRFVQ--LDSWSKGVGLGLAICRGLVEQMGGKIWVTS 266 >gi|163639423|gb|ABY28262.1| ethylene receptor ERS1a [Actinidia deliciosa] Length = 466 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 137/272 (50%), Gaps = 42/272 (15%) Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+ E+ +N F+ +++E+R+P+ II + LL ++L Sbjct: 152 ESMRARDQLMEQNVALDLARQEAEMAIRARNDFLAVMNHEMRTPMHAIISLSALLLETEL 211 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q +E I SS +L L+ND+LDL+ ++ G ++L L++L +V I Sbjct: 212 ---TPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLELENGVFNLHELFRQVVDLIR 268 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712 + + +I L + V D +RL+Q I NA+ F+ KG I+ ++ Sbjct: 269 PIASVKKLSMTLILGPDLPVYAVGDEKRLIQTILNIAGNAVKFTKKGFVSIVASIAKPES 328 Query: 713 ARD---------NGDFIF----SVKNNGSSI-PEDMCKSVFNRFV-----SNAHRGQRRG 753 RD +GD F VK+ G I PED+ S F +F S+ + G G Sbjct: 329 LRDWRPPEFYPVSGDSHFFLRVQVKDTGCGINPEDIPLS-FTKFAQSKSGSSLNNG---G 384 Query: 754 VGLGLSIVESFINLHGGHVSISS--SDEGVTT 783 GLGL++ FINL GGH+ I S SD+G T Sbjct: 385 AGLGLAVCNRFINLMGGHIWIESEGSDKGTTV 416 >gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] Length = 571 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 9/241 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A+ + ++K + I++ FV +V++EL++PLT+I GF + LK + + +++ I Sbjct: 333 AVVQDVTEIKKLENIRSQFVANVTHELKTPLTSIRGFAETLKYVE---DRETKDKFLNII 389 Query: 614 SASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L L+NDIL L+ ++ + MKL I +N++L ++ + + NI + ++ Sbjct: 390 NDESDRLTRLINDILALSHIENSNSMKL--ENISINEMLEDIVYLMENSAKDKNIELFIV 447 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D K+ DR R Q+ ++ N + ++ +G V + A +++ + I V++ G I + Sbjct: 448 GD-KMQPIKGDRDRFKQMMINLVDNGIKYTEEGGKVYIGAKKEDNNCIVWVEDTGVGISK 506 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + +F RF V A + G GLGL+IV+ + GG ++I S + + RIP Sbjct: 507 EHVERLFERFYRVDKARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIPI 566 Query: 791 K 791 K Sbjct: 567 K 567 >gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 677 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 14/251 (5%) Query: 541 TFVNVTDSVRAE----RALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 T +++TD +AE R + E ++EA R A+ +K+ F+ +S+ELR+PL I+G++ L Sbjct: 261 TIIDITDRKQAEEERGRLIGEQVARHEAER-ANRMKDEFLAILSHELRTPLNAILGWSKL 319 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ K ++ +E I ++ L+ DILD++ + G + LN I L ++ Sbjct: 320 LRAKKFDQATIDKA--LETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEV 377 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 ++ +I I+ + +G + D RL Q+ +LSNA+ F+ +G V ++ Sbjct: 378 AIDALRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLE 437 Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770 GD+ + + G I + VF+RF R G+GLGL+IV + LHGG Sbjct: 438 L-VGDYAEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGG 496 Query: 771 HVSISSSDEGV 781 V ++ G+ Sbjct: 497 TVGAENNSSGI 507 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 27/276 (9%) Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565 S DD+ QG LEL++ V + V A A ++ EAL + Sbjct: 309 SLDDD---YQGFLELVAGQV-----------------ATIIADVGAYEAAKQRAEALAEI 348 Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 D K F +VS+E R+PLT ++ + L L+ Q +E +S LL LVN Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRLEIAQRNSLRLLKLVN 408 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684 +LD + ++AG + Y + L E+ S + M + + +++ LG S D+ Sbjct: 409 TLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTL-IVNCPPLGESVYVDQ 467 Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 + +I +LSNA ++ GS TV ++ D+ + SV + G IPE +F RF Sbjct: 468 EMWEKIVLNLLSNAFKYTLTGSITVNVQGFDDHIE--LSVIDTGIGIPEADLPHLFERFH 525 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 V A G G+GLS+V+ + LHGG + ++SS Sbjct: 526 RVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSS 561 >gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] Length = 896 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N++ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--------FIF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWMTI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] Length = 946 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 129/240 (53%), Gaps = 15/240 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A+ + F++++S+++R+PL IIGF L S+ G+ Q Y+ IS S LL Sbjct: 564 RQANRARGVFLRNMSHDIRTPLNAIIGFAKLAMKSE-GNFEQIQD-YLSKISVSGNHLLA 621 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 +VND+L+++ +++G KL + ++++EV+ I + E + ++ K+ + Sbjct: 622 IVNDVLEVSRIESGQTKLEELPCNIKNIVDEVEVIIQGQAQEKT-QTFIVDTSKVKDYYI 680 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSI-PED 733 DR R+ ++ +L NA+ F+ KG + L+ A ++ VK+NG + PE Sbjct: 681 YCDRLRVKEVLVNLLGNAVKFTPKGGKIELRIIQNEPAPEGYANYEVHVKDNGCGMSPEF 740 Query: 734 MCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 M K F R ++ G +G GLGLSI + F++L GG + ++S ++ T + RI + Sbjct: 741 MGKMFLPFERERTSTVSG-IQGTGLGLSIAKQFVDLMGGTIEVTSKEKEGTEVIVRISPR 799 >gi|308271627|emb|CBX28235.1| hypothetical protein N47_G35590 [uncultured Desulfobacterium sp.] Length = 487 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 13/296 (4%) Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558 L A I+ F+ +R + + LL + E + P T+ + + + A + ++ Sbjct: 199 LMVAFISFFNTKR--INRPILLLKEKTTEVAKGRYPEPLTIHSPPEIGELATAFNNMCDR 256 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 L++ D++K F+ H+S++LR+PLT I + +L +Q + I Sbjct: 257 ---LKELDDLKIDFISHISHKLRTPLTAIQEASGMLLEGIFAGKPERQQELYSIIKDECK 313 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDG 675 L+ VN ILDL+ ++A +M ++ + D++ ++++I H + I + + Sbjct: 314 RLIVEVNRILDLSRMEAKMMDYHFD---VTDIMPIIRKNILKLSHLAQKRGIELNMCPVN 370 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L D++R+LQ+ ++L NA+ F+ KG I + G SV + G IPE Sbjct: 371 SLPPINIDQERILQVVEELLGNALKFTPEKGKINISAILNEKGMIEISVTDTGYGIPEME 430 Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF +F R RG GLGLSI + I +HGG + S +T + +P Sbjct: 431 LGRVFEKFKRIEGGRAAERGTGLGLSIAKHIITVHGGQIWAESKPGKGSTFSFTLP 486 >gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 778 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 133/260 (51%), Gaps = 11/260 (4%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 + F + T+ E L + +A + A++ K+ F+ ++S+E+R+PL ++G LL+T+ Sbjct: 370 VEFRDDTERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGLMQLLQTT-- 427 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L+ +Q + V SS L L+ D+LD++ ++AG M + L +L + V + A Sbjct: 428 -LLDDEQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFA 486 Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARD 715 + N+ ++ + D L + RL QI ++ N++ F+ +G + A Sbjct: 487 VNADKKNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQGRVRLEMAPIAPAK 546 Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771 NG+ +FSV + G IPED + +F F V ++ + +G GLGL+IV + L GH Sbjct: 547 NGELRLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGH 606 Query: 772 VSISSSDEGVTTINCRIPSK 791 + + S T ++ +P K Sbjct: 607 IYMESVLGKGTAVHVVLPFK 626 >gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 855 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|71280347|ref|YP_271164.1| sensory box sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71146087|gb|AAZ26560.1| sensory box sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1137 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 135/250 (54%), Gaps = 18/250 (7%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 T+ F +VT + AL + + A+ +K F+ ++S+E+R+P+ + G DLL + Sbjct: 549 TISIFHDVTSQQATQSALVKARDQAEYANRVKIQFLANMSHEVRTPINAMQGMMDLLAHT 608 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQ 656 SL+++Q Y+ ++S+ LL+LV+++LDL+ ++AG M ++ + L ++N+ +K Sbjct: 609 ---SLDTRQLHYLVNAQSASSTLLHLVDELLDLSKIEAGKMIVSQDAVNLPIIINKALKL 665 Query: 657 SIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGS---TVIL 710 +I H+ R+K+I D + ++D RL+Q+ + + +NA+ F+ +G T+ + Sbjct: 666 NITNVDHQ---RVKIIVDMSADVPSNVISDEMRLVQVLANLFNNAIKFTEQGQIKLTIDV 722 Query: 711 KAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766 + D F + + G I + +FN F S A R G GLGLSI + I Sbjct: 723 LSIDDTVAKLRFRMSDTGIGIASNNQSHLFNAF-SQADESMTRKYGGSGLGLSICQQIIK 781 Query: 767 LHGGHVSISS 776 L GG + ++S Sbjct: 782 LLGGKIKLTS 791 >gi|163639427|gb|ABY28264.1| ethylene receptor ETR1 [Actinidia deliciosa] Length = 744 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ EV + Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVRTFNLHATFREVLNLVK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709 + I + L + V D +RL+QI ++ NA+ FS +GS I Sbjct: 432 PIASVKQLFISINLAPDLPEYAVGDEKRLMQIMLNVVGNAVKFSKEGSISITAFVAKPES 491 Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 L+ R DN ++ VK+ GS I P+D+ K VF +F + R G GL Sbjct: 492 LRDPRAPEFFPVPCDNHFYMRVQVKDFGSGINPQDIPK-VFTKFAQSQSLVSRNSGGSGL 550 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL G++ I S G Sbjct: 551 GLAICKRFVNLMEGNIWIESEGLG 574 >gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 1231 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616 + E L + D K +F +VS+E R+PLT ++G D+L ++ L++ +E + Sbjct: 347 RAETLAEIDRAKTAFFANVSHEFRTPLTLMLGPLEDVLSQPQV--LSAADHDRLEIAQRN 404 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL LVN +LD++ ++AG M+ Y L EV + + +++ V Sbjct: 405 ALRLLKLVNTLLDVSRIEAGRMQAAYVPTDLPSFTAEVASVFRSAIETAGLKLIVDCPPL 464 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 DR+ +I +LSNA F+ G + +K + F ++++ G+ IP+ Sbjct: 465 QEPAHVDREMWEKIVLNLLSNAFKFTFSGE-IEVKLREVDSHFELTIRDTGTGIPQHELP 523 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V+ A G G+GL++V+ LHGG V ++S+ +T R+P Sbjct: 524 KLFERFHRVAGASGRTHEGSGIGLALVQELAKLHGGSVGVTSTLGQGSTFAVRVP 578 >gi|110638386|ref|YP_678595.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281067|gb|ABG59253.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 577 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 7/217 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++ D K +F+ VS+E ++P+++I LL+ ++G LN +Q +E I + LL Sbjct: 347 KELDFAKTNFIATVSHEFKTPISSIKMSLQLLENKQIGMLNEEQQNLLESIKEDANRLLK 406 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLND---LLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + ++L++ V++G ++L +I+ ND +L + T+ + NI +K+ + + Sbjct: 407 ITGELLNMTQVESGNIQL---SILPNDPKEILFYAINATKTQAEQKNISLKITAPDNIPH 463 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 +AD ++ + +LSNA+ +S ST+ L A + SVK+ G I +F Sbjct: 464 VLADNEKTAWVLINLLSNAIRYSYDNSTIQLAIASRDNKVTISVKDTGQGIASQYKDKIF 523 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 NR+ ++ G GLGL+I + FI GG +S+ S Sbjct: 524 NRYFR-VPGTKKEGTGLGLAISKEFIEAQGGSISVDS 559 >gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 919 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 134/270 (49%), Gaps = 16/270 (5%) Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N + ++ V ++T+ + + L + A +A+ K+ F+ ++S+E+R+P+ ++GF + Sbjct: 567 NQEHIMALVQDITERKQVHQELIARRSA-EEANRAKSRFLANMSHEIRTPMNAVLGFARM 625 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L+ +L +KQ+ I S LL L+N ILD++ ++AG L+ L L+++ Sbjct: 626 LENDP--ALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDK 683 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 + + + + + D L + AD+ +LLQI + +LSNA+ F+S G + + Sbjct: 684 LMTMFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTIS 743 Query: 713 ARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761 ++ G +F V+++G I +F F ++ G GLGL+I Sbjct: 744 SKPPGPADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFFQTQNKMHPGGTGLGLTIS 803 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + L GG++++SS + + IP K Sbjct: 804 REYAVLMGGNLTVSSQEGRGSCFRLEIPVK 833 >gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071] gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071] Length = 459 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620 L K++ + FV +VS+EL+SPLT++ GF LL + G+L K Q++Y+ +S +T L Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTVLSEETTRL 288 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 +L +L LA++D + L ++ Q E + I + D ++ Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNY 346 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D + L Q++S +L+NA+ F+ +G + + + + V+++G I + +F Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYDEGTNVFVEVQDSGVGISKSDMAKIFE 406 Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF +N R + G GLGLSI + I LH G +++ SS E TT ++P Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457 >gi|229818839|ref|YP_002880365.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia cavernae DSM 12333] gi|229564752|gb|ACQ78603.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia cavernae DSM 12333] Length = 579 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 18/244 (7%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 +T ++EA R DE F+ VS+ELR+PL++I+G+ +LL+ G+L+ + YV+ I Sbjct: 331 VTARHEAERLQDE----FIGLVSHELRTPLSSILGYVELLQLG--GALSGEDETYVDVID 384 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL +V+D+L + AG + + ++ E+ I +++ V D Sbjct: 385 RNARRLLRMVDDLLTSVQLTAGTFTFLPEQVDVVGVVRELVTDIEPTARRAEVQVVVAGD 444 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSVKNNG 727 + +D RL Q+ +L NA+ FS++G+TV +K R + V + G Sbjct: 445 DAV-PLRSDPGRLGQVVGNVLGNAVKFSARGATVTVKVTGLLGADGRRRARIV--VTDTG 501 Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 S I D + RF S+A R + RGVG+GLS+V++ ++ HGG ++I S T + Sbjct: 502 SGIAPDDLARITERFYRSSDARRRRVRGVGIGLSVVQAIVDAHGGTITIRSQPGEGTVVE 561 Query: 786 CRIP 789 +P Sbjct: 562 IDLP 565 >gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 723 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 V+VT S+ ER L + +A++ K+ F+ ++S+ELR+PL +IG + L Sbjct: 328 VLVDVTQSIVYERELLLAKKKAEEANKAKSDFLSNMSHELRTPLNAVIGISLWLLEE--- 384 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + ++Q + ++ + SS LL+L+NDILD ++ ++++ L D L + S Sbjct: 385 NPKTEQLENLKNLKFSSESLLSLINDILDFNKIEERLVEIERIDFNLKDFLKSITTSFTM 444 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RD 715 + E + + F+ +D RLLQI + +LSNA+ F+ GS + +A + Sbjct: 445 RAKEKLLIFNEDIKDTVPEFIHSDPTRLLQILNNLLSNALKFTQVGSITLYVSAIPMDSE 504 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + F V + G I + +SVF +F R+ G GLGL+I ++ + L GGH+ Sbjct: 505 SVLLTFEVTDTGIGIEPNKFQSVFEKFTQANQDTTRKFGGSGLGLAISKALVELLGGHLV 564 Query: 774 ISSSDEGVTTINCRIPSK 791 ++S + + +P K Sbjct: 565 LTSEVGKGSKFSFSLPCK 582 >gi|150018233|ref|YP_001310487.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904698|gb|ABR35531.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 403 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 2/235 (0%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L + E+K+ F+ +S+E R+PL I + L+ K +Y+ I ++ Sbjct: 137 NLELERTLEMKDEFLSLISHEFRTPLNVISSAIQAMNYICSDELSDKAKKYLRMIRQNTF 196 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L LVN++LD+ V+AG +K+N + + L + +SI T + +I + +S + Sbjct: 197 RQLRLVNNLLDITRVNAGRIKINKKNVDIVFLTKSIIESIYTYVALKSIDVTFVSLIEKK 256 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D ++ +I +LSNA F+ +G +I+ + + VK+ G IPED + Sbjct: 257 IIGIDDEKYERILLNLLSNATKFTPEGKPIIVTLSSIDDKICVEVKDKGIGIPEDKANII 316 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF V ++ Q G G+GLS+V+ FI GG +S+ S +T +PS+ Sbjct: 317 FERFGQVDSSLSRQAEGAGIGLSLVKKFIEALGGSISVKSELGKGSTFTILLPSE 371 >gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 540 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 28/365 (7%) Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL-WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +H + + GRI+ NP F+ L T E+ L + +Y E W Sbjct: 21 EHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGKTPRVLQSGLHDRGFYEEL--WGT 78 Query: 500 FA---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERAL 555 A F + RK T EL +S +I P+ + + ++ +V V + V + L Sbjct: 79 LARGEVWKGEFCNRRK----TGELYWESA---AIAPVRDRKGVVANYVAVKEDVTESKVL 131 Query: 556 TEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ E A+E K+ F+ +S+E+R+P+ I+G +LL+ + L+ +Q +Y+ Sbjct: 132 REELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQT---DLDPQQEEYLR 188 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S+ L++ +N +L+ + + A +L L + + + A + E + + Sbjct: 189 IVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAREKGLETVL 248 Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSVKNN 726 D ++ V D RL QI + +L NA+ F+ KG + I + ++G F V + Sbjct: 249 DLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEKGWIALSIRRFPPEDGGLWLEFGVVDT 308 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G IP + +F F RR G GLGL+IV ++L GG +S+ S + ++ Sbjct: 309 GIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLESEEGKGSSF 368 Query: 785 NCRIP 789 + R+P Sbjct: 369 HVRLP 373 >gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] Length = 908 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 20/226 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT LN Q Y+ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNITQRDYLHTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGK 676 +++ND+LD + ++AG + L L D L+EV +A HE + + + + D Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGLELTLSIQPEVPDNT 402 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPE 732 +G D RL QI +L NA+ F+ +G+ I L++ N + + + G I E Sbjct: 403 IG----DPLRLQQIIINLLGNAIKFTERGNIDIRIELRSLSTNRVNLEVQIHDTGIGISE 458 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S+ S Sbjct: 459 KQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHS 504 >gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146] gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella ictaluri 93-146] Length = 918 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT ++KT L++ Q Y+ I S+ LL Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTP----LSATQIDYLHTIERSANNLL 337 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L + +L + ++EV +A H+ + + + + + Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHV 397 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736 + D RL Q+ + +L NA+ F+ KG+ I R + V + G I E Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDTGIGISERQQS 457 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + IN GG ++ S Sbjct: 458 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHS 499 >gi|237734956|ref|ZP_04565437.1| two-component system sensor protein kdpD [Mollicutes bacterium D7] gi|229381732|gb|EEO31823.1| two-component system sensor protein kdpD [Coprobacillus sp. D7] Length = 486 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 557 EKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613 EK EA + + ++K++ ++ +S++LR+PLT+I G + L + L ++ S S ++ I Sbjct: 245 EKEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFL-VNNLDTVESDTSLNIIQDI 303 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S + L +V ++L++ + G K+N V++D+++ +I + + + +K Sbjct: 304 SKEAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETK 363 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 D L F D Q ++Q+ +L NA + S V+LKA N + IF V +NG I Sbjct: 364 DIIL--FPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIK 421 Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F+ F + + + +RG+GLGL+I ++ + H G + ++D G T +P + Sbjct: 422 QLNHIFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLPLE 481 Query: 792 E 792 E Sbjct: 482 E 482 >gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 596 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619 LR + ++ FV VS+ELR+PLT+I G+T+ L G+++ + S +++ I S Sbjct: 357 LRNLERVRRDFVSSVSHELRTPLTSIKGYTETLLE---GAMHEPEHASAFLKIILQESEQ 413 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LDL+ +++G ++ ++S + L ++ + + + + +R+ V + Sbjct: 414 LTALVNDVLDLSRIESGRIEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQ 473 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738 AD L + +L NA+ + I +A NGDF+ V++NG I + + Sbjct: 474 LHADSGYLEIVVRNLLDNAIKYVDAEHGKIRISAFRNGDFVQLDVEDNGIGISKQDLGRI 533 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F RF V A + G GLGL+IV+ + H GHV + S Sbjct: 534 FERFYRVDKARSRELGGTGLGLAIVKHIVLAHKGHVEVRS 573 >gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 599 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 8/245 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQ 608 +A +AL E EA A + K++F+ +S+ELR+PLT I+G+++ L+ L L+S S Sbjct: 342 QAAQALQEAKEAAEAASQAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD 401 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENN 666 I+A LL L+NDILD A ++A + ++ + ++ L+NEV ++ K +N Sbjct: 402 LDRIITAGRH-LLTLINDILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNT 460 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 I + V D L +AD RL Q+ ++ NA F+ +G + + V + Sbjct: 461 ITVTVEPD--LPPVLADPVRLRQVLLNLVGNACKFTGQGEIRVHCYRSTTAEIQIDVSDT 518 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 G I D + +F FV + RR G GLGL+I + + GG + ++S +T Sbjct: 519 GIGIAADQLQHLFKPFVQVDNGPTRRYGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTF 578 Query: 785 NCRIP 789 + R+P Sbjct: 579 SVRLP 583 >gi|210613372|ref|ZP_03289692.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787] gi|210151214|gb|EEA82222.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787] Length = 470 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L+ D+ + F+ +VS++ RSPLT+I G+ + + + Q +Y + I + L Sbjct: 239 LKDMDDYQKKFIANVSHDFRSPLTSIKGYLEAMADGTIPV--EMQDKYFKIILFETERLT 296 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +L D+L L D M L+ ++ +++++ + I IK++ K+ + Sbjct: 297 DLTQDLLTLNQFDTKNMLLDKTSFDIHEVIKNTAATFEGTCTGKRISIKLLFATKVLNVS 356 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD++++ Q+ +L NA+ FS S +I++ N SVK++G IP+ ++ R Sbjct: 357 ADKRKIQQVLYNLLDNAIKFSPNDSEIIIETTEHNEKVFVSVKDHGIGIPKKSLNKIWER 416 Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-----INCRIP 789 F ++ RG+ ++G GLGLSIV+ I H ++++ S+ EGV T + R+P Sbjct: 417 FYKTDLSRGKDKKGTGLGLSIVKEIIQAHKQNINVVST-EGVGTEFTFSLQKRMP 470 >gi|206972722|ref|ZP_03233659.1| putative sensor histidine kinase [Bacillus cereus AH1134] gi|206732355|gb|EDZ49540.1| putative sensor histidine kinase [Bacillus cereus AH1134] Length = 337 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++++E + + +S+++R+PLT+IIG+ D LK S KQ +Y++ + S L + Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKVLYMKSNNLKH 161 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV++I ++A +DA L + +++ EV ++ ++NI ++++ +A Sbjct: 162 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPESTCPIIA 221 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741 D +++I ++ NA+ + G T+ ++ + ++ + + G IP+ +++F R Sbjct: 222 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPQHDLQNIFERM 281 Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + S R G GLGLSI ++ + +GGH+ + S+ TT +P Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSVP 330 >gi|30019943|ref|NP_831574.1| sensor protein vanS [Bacillus cereus ATCC 14579] gi|29895488|gb|AAP08775.1| Sensor protein vanS [Bacillus cereus ATCC 14579] Length = 358 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 130/245 (53%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 170 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ + + L+ ++ ++ + N+ Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 230 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + SD L V D ++++F ++ N++ + G + ++ + + +KN G Sbjct: 231 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 289 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S LH G +++ S+D+ T Sbjct: 290 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 345 Query: 785 NCRIP 789 ++P Sbjct: 346 TVKLP 350 >gi|323497639|ref|ZP_08102656.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM 21326] gi|323317388|gb|EGA70382.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM 21326] Length = 566 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 10/241 (4%) Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +T +A +A+E + S FV +++ELR+PL ++G +LL + SL+ +QS + Sbjct: 188 VTSNQKARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADT---SLDGEQSVLLN 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S +L +++NDILD + + AG+M+L + D+ + + + +E I + Sbjct: 245 NLIHSGGLLRHIINDILDFSKMSAGMMELIPTRFDWRDIRDMLTGVFEPRANEKGIGFNL 304 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 I + +F+ DR+R+ Q+ ++ NA+ F+ +GS V ++ G F V++ G I Sbjct: 305 IELNPMPEAFIGDRERISQVLVNLVGNAIKFTHQGS-VSIETDWQEGQVSFRVRDTGIGI 363 Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 ++ +F+ FV +R G GLGL+I + + + G +++ SS + +I Sbjct: 364 DQESMAQLFDPFVQADRTAKRNYEGTGLGLAICKRLVEMMKGELTVVSSKGVGSEFRVKI 423 Query: 789 P 789 P Sbjct: 424 P 424 >gi|229115400|ref|ZP_04244807.1| hypothetical protein bcere0017_16940 [Bacillus cereus Rock1-3] gi|228668014|gb|EEL23449.1| hypothetical protein bcere0017_16940 [Bacillus cereus Rock1-3] Length = 246 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 130/243 (53%), Gaps = 13/243 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QYV Sbjct: 3 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSHGEECGQYVSI 61 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L N V D+L+ ++ ++L+ + + + L+ +V ++ + N+ + Sbjct: 62 LKRKSYELKNQVEDLLEYCQINYREIELHKNVVDMKALIEQVMIDFLPQLDDANMSFYIK 121 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 S+ +L V D ++++F I+SN++ + G + ++ ++ + +KN G IP Sbjct: 122 SNEELYVKV-DVALIVRLFENIISNSIMYGKDGKEISIQISQRERNVEVEIKNFGQCIPT 180 Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 VF +F +RG++ G G+GL+I S LH G +++ S+D+ T Sbjct: 181 KSLPYVFEKF----YRGEKSRSSHTGGKGMGLAISRSIAQLHKGDITVCSNDKE-TIFTV 235 Query: 787 RIP 789 ++P Sbjct: 236 KLP 238 >gi|167903068|ref|ZP_02490273.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei NCTC 13177] Length = 345 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 590 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 159/360 (44%), Gaps = 47/360 (13%) Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +++GV F DG I ++NP F W E+ G I T +L Sbjct: 264 MADGVITFNRDGTILITNPPAERFLQQWYYEQE----GNEQEAIPTTLK---------EL 310 Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEYSII--PLPNAQTMLTFVNVTDSVRAERAL 555 +I +++ SLQG Y +I PL N + V +V R + Sbjct: 311 LEQVILLENEQTGEVSLQGR---------SYVVIVSPLYNEEY------VRGAVAVVRDM 355 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 TE+ R+ D+++ F+ +VS+ELR+P+ + G+++ + + ++ + + I Sbjct: 356 TEE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAESEEEKKEIAKIIYD 410 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S + LVND+LDLA ++AG + L ++ L V E NI + I Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGH- 469 Query: 676 KLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 K G D R+ Q+ + ++ NA+ + + +V + + V ++GS IP Sbjct: 470 KTGLNSQQIYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSGILVEVSDSGSGIP 529 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ VF RF A + G GLGL+I ++ I+ H G +S+ S + TT + +P Sbjct: 530 EEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589 >gi|262199366|ref|YP_003270575.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM 14365] gi|262082713|gb|ACY18682.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM 14365] Length = 1885 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 12/226 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K EA R A+ K+ F+ +++ELR+P+ IIG +LL ++ + +Q +Y+ ++ Sbjct: 1484 KEEAER-ANRAKSDFLASINHELRTPMNGIIGMIELLFDTE---PSDEQREYLGMARTAA 1539 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676 L+ ++ D LD++ ++AG ++L L+D + + + + + ++ Sbjct: 1540 DQLMRIIRDTLDVSRIEAGKLELEPIEFELDDCMATLASMLPAQTQSEGPALSFDVAPEV 1599 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI--FSVKNNGSSI- 730 DR RLLQ+ + NA+ F+ V L A+R G + F+V+++G I Sbjct: 1600 PRKLRGDRDRLLQVLINLFGNAIRFTPAEGLVALHVDLASRSAGAVVLRFAVRDSGEGIA 1659 Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 PED +++F F + GVGLGL+IV S + L GG +S+ S Sbjct: 1660 PEDQ-EAIFQPFTQARSANSKGGVGLGLAIVSSLVELMGGDISVES 1704 >gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 686 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 12/243 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E + A+E K F+ ++S+++R+P+ IIGF+ LL+ + K +Y+ I Sbjct: 296 LEKAAELAKSANEAKTRFLFNMSHDIRTPMNAIIGFSGLLEKNLQNE--EKAKEYLGKIC 353 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S +L+ ++N IL++A +++G L +N L + V + + N++ V D Sbjct: 354 SSGNLLMTIINQILEIARIESGTTALQLKAEDINTLFHTVNTVFEEDVRKKNLQYSVDLD 413 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGD-----FIFSVKNNGS 728 + DR +L +I I+SNA+ ++S G V +K +D+ D IF+ ++ G Sbjct: 414 VYHTFILCDRVKLQEIMLNIISNAIKYTSDGHGVHVKIYEKDSEDPRKARLIFTCEDTGI 473 Query: 729 SIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + E+ +F F S H + G GLGL IV+S I L GG + + S+ T Sbjct: 474 GMSEEYLPHIFEEF-SREHTTTENKVAGTGLGLPIVKSMIELMGGSIRVESTQGAGTKFT 532 Query: 786 CRI 788 I Sbjct: 533 VDI 535 >gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 589 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R +TE+ RK D++++ F+ +VS+ELR+P+ + G+++ + + + ++ ++ + Sbjct: 353 RDMTEE----RKLDKLRDDFIANVSHELRTPVAMLQGYSEAI-IDDIAASEEEKKEFAKI 407 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671 I + + LVN++LDLA ++AG + N + V E I + Sbjct: 408 IYDETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCE 467 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 SD L + D R+ Q+ + ++ NA+ +S V +K G V++NGS IP Sbjct: 468 TSDSDL-TLEIDADRIEQVLTNLIDNALRHTSSNGYVKVKEEEAPGGVYVHVEDNGSGIP 526 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 ++ VF RF A + G GLGL+I ++ + HGG + + S TT + +P Sbjct: 527 DEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLP 586 Query: 790 SK 791 K Sbjct: 587 KK 588 >gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 469 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 19/246 (7%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A + AL K DE K F+ +VS+ELR+PL+ + G+++ L + ++Q +YV Sbjct: 229 KAFNQMAHALAKEDERKKEFLANVSHELRTPLSYVKGYSEALLDGVIKE-EAQQKKYVRL 287 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---- 668 I ++ + LV D+LDLA ++ G L + + L+ E + + E NIR Sbjct: 288 IHREASRMQRLVRDLLDLAQLE-GTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLD 346 Query: 669 --IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 +I DG D R+ Q+ +L NA+ ++ T+ L+A + ++ Sbjct: 347 LDHDLIVDG-------DPDRIEQVLQNVLDNALRYTPSFGTISLRAVNKQPMCELIIADS 399 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G + ++ + + RF A R + R G GLG++IV+ I LHGG + S TT Sbjct: 400 GCGMSKEDIERLGERFF-RADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGTT 458 Query: 784 INCRIP 789 + +P Sbjct: 459 VYMELP 464 >gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L] Length = 896 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--------FIF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWMTI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 608 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP+D +F + V +++ G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|297159981|gb|ADI09693.1| Histidine kinase [Streptomyces bingchenggensis BCW-1] Length = 557 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 7/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R+ E+L+ ++E + V V++ELR+PL N+ G+ + L+ + + + + Sbjct: 314 RSFNRMAESLQASEERQRRLVGDVAHELRTPLANLRGYLEALRDGVV----DPEPELLAS 369 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + +V+D+ DLA +AG + + I L +LL + + + + V Sbjct: 370 LHEEVLLQQRIVDDLQDLALAEAGALTYHREDIDLGELLETCRTVHRAQAERAGVALTVE 429 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + G + AD RL Q ++SNA+ + G TV L AR + V + G IP Sbjct: 430 TPGGEPLYAHADADRLRQAVGNLVSNAVRATGPGGTVRLSLARRGAGAVVQVGDTGHGIP 489 Query: 732 EDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF+RF ++A RG+ G GLGLSI + H G + + S+ TT +P Sbjct: 490 AEHLPHVFDRFWRADAARGRATGGSGLGLSIARQIVTDHQGTIGVESAVGAGTTFTIELP 549 Query: 790 S 790 + Sbjct: 550 T 550 >gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas ingrahamii 37] gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing ATPase domain [Psychromonas ingrahamii 37] Length = 1121 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 6/238 (2%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL E A+E K+ ++ +S+ELR+PL ++G+ LL S+ +L KQ + + + Sbjct: 656 ALQVAKEVAEAANEAKSRYLAGLSHELRTPLNVLLGYAQLL--SRDPALPFKQREIIGIV 713 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + L +L+ +L+++ ++AG + L L +L ++ + + ++ ++ Sbjct: 714 KRNGEHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLVDMFQMQASKKRLKFYYLA 773 Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L +VA D+QRL QI ++SNA+ ++ +GS V K + FSV + G I + Sbjct: 774 SPNLPDYVATDKQRLRQILINLISNAIKYTEQGS-VTFKVTYRSEVAHFSVIDTGPGISK 832 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + +F F + N H G GLGL+I S L GG +S++SS +T N R+ Sbjct: 833 SNQELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEISLTSSIGQGSTFNFRL 890 >gi|332526424|ref|ZP_08402545.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332110555|gb|EGJ10878.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 679 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 28/364 (7%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESD 495 ETID E ++ PD R+ + N +R+L+ L G +I A Y + Sbjct: 296 ETID---EAFVLYDPDDRLVICNDKYRALFARPGMELLTGVRYEDILRAGVRGGQYPAAQ 352 Query: 496 G----WDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVR 550 G W + R ++ L D VL +P+ + V++TD VR Sbjct: 353 GREEEW-----VAQRLQVHRSGAGPFVQRLDDGRVLRVVDRVMPDGHVVGFRVDITDLVR 407 Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A EA +AD K+ F+ +S+ELR+PL +I+GF+DL + G + + Sbjct: 408 A-------TEAAEQADRSKSEFIGTISHELRTPLQSILGFSDLGRHFAAG--HPQFEPMF 458 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I T +L LVN +LD++ +D + L L +L V + + + + I Sbjct: 459 RDIHDGGTRMLRLVNGLLDISKIDGTLGSLVRRPADLGELALAVVRELRPQAGARRVEIV 518 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGS 728 + + D R+ Q+ +L+NA+ F+ +GS++ + AA D G + + G Sbjct: 519 LPEAAAALTAEVDAFRMQQVLRNVLANAIRFAPEGSSIEI-AATDLGAAGRRLEILDRGP 577 Query: 729 SIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE +++F FV ++ + G GLGL+I + HGG ++ ++ D G Sbjct: 578 GIPEAEIEAIFKPFVQSSRTKSGAGGTGLGLAICRRIMGAHGGRITAANRDGGGARFTIE 637 Query: 788 IPSK 791 +P+ Sbjct: 638 LPAP 641 >gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80] gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80] Length = 984 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|253698664|ref|YP_003019853.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251773514|gb|ACT16095.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 755 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 117/228 (51%), Gaps = 3/228 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + D +K F+ VS+EL++PLT+I G LL T + L + Q + ++ L+ L Sbjct: 520 QVDRMKTEFISTVSHELKTPLTSIKGSLQLLLT-RSKWLTDTERQLLTVCFRNTQRLIRL 578 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +++ILD++ +++G M N+ ++ + +L + I + +I I L D Sbjct: 579 ISEILDISGIESGGMIFNFKSLCIGELAVYAVEEIKSYAMGRDITIVNTVGEHLPMVFGD 638 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 RL+Q+ + +LSNA+ FS +G V++ A ++ + SV + G I +F +F Sbjct: 639 SDRLIQVMTNLLSNAVKFSPEGKVVMVTAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQ 698 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + + RG+ G GLGL+I + + H G + +++ E T + +P Sbjct: 699 QIESTERGKIGGTGLGLAICKEIVERHHGRIFYTAAKEYGNTFSFTVP 746 >gi|170692987|ref|ZP_02884148.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170141985|gb|EDT10152.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 720 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 8/212 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K F+ ++S+ELR+PL I+G+ +L+ SL+ + V I S LL L+ D L Sbjct: 263 KGEFLANMSHELRTPLNAILGYAQILRRD--ASLSEHHREGVGVIQRSGEHLLALIGDAL 320 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQR 686 D A V+AG +++ + + L L+ +++ I K+ + ++ +V D + AD +R Sbjct: 321 DFARVEAGRLRIEMNDVPLAGTLDAIREIIEVKIAQKHVEFIWRVAPDVP-DAVRADERR 379 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744 L Q+ +L NA +++ +GS +L G F V++ G + D +++F F + Sbjct: 380 LRQVLLNLLVNAFNYTDQGSVSLLIEMSAAGKVCFEVRDTGIGMDADQLQTIFEPFEQIM 439 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + RG G GLGL+I + + G + + S Sbjct: 440 HTERGA-SGTGLGLTISQQLLRAMGSEIHVQS 470 >gi|87309249|ref|ZP_01091385.1| PAS protein [Blastopirellula marina DSM 3645] gi|87287888|gb|EAQ79786.1| PAS protein [Blastopirellula marina DSM 3645] Length = 1309 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 146/315 (46%), Gaps = 37/315 (11%) Query: 484 AATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 +A+ R+ DG +AA + T DE L G ++++ D Sbjct: 880 SASDDRWMLRKDGTRFWAAGVTTGLLDENNKLLGFMKVMRDQ------------------ 921 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 T+ R E L + L ++D K F+ + +ELR+PL I +++K K Sbjct: 922 ---TERKRLEDELRQVAADLSESDRRKTEFLATLGHELRNPLAPIRTGLEMMKMVK---- 974 Query: 603 NSKQSQYVEYISAS----STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + +E + + + ++ L++D+LD++ + +G ++L I LN+++ ++ Sbjct: 975 --NDPELIENVRGTMERQTQQMVRLIDDLLDVSRITSGKIELRTCQITLNEVIRSAVEAT 1032 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 + E ++V AD RL Q+FS +L+N+ ++ G + L A +NG Sbjct: 1033 QPFIDEAGHTLQVTLPETPIVLDADPNRLAQVFSNLLNNSSKYTPDGGHIWLAAQCENGK 1092 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I ++K++G IP D +F F + G+G+GL++V+ + LHGG + + S Sbjct: 1093 AIVTIKDDGLGIPLDQQSQIFEMFAQIDRPLEMGYTGLGIGLTLVKQLVELHGGTIDVQS 1152 Query: 777 --SDEGVTTINCRIP 789 +D+G + R+P Sbjct: 1153 EGADQG-SEFFVRLP 1166 >gi|238787449|ref|ZP_04631247.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC 33641] gi|238724236|gb|EEQ15878.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC 33641] Length = 888 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +A +A+ K+ + +S+E+R+PL +G +LL+ + L S Q++ E Sbjct: 335 ALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQNT---PLTSAQNRLAETA 391 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL ++N++LD + +++G ++L + LL++ +I +++ I + Sbjct: 392 RQCSHSLLAIINNLLDFSRIESGQLELAQERTAILPLLDQAMLTIHSQVLSKAITLSTYV 451 Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 ++ V D QRL QI +L NA+ F+ +G + L R++ F+V++ G I Sbjct: 452 SAEVPLQLVLDGQRLKQILINLLGNAVKFTQQGH-IRLNVEREDSQLCFTVEDTGCGIDL 510 Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F F + GQ G GLGL+I ++ + GG +++ S Sbjct: 511 QHQQQIFRPFAQTSDYGQ--GTGLGLTIADNLARMMGGQITLYS 552 >gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218] Length = 568 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 12/242 (4%) Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + ++E+ ++A+E + + FV +++ELR+PL ++G +LL + SL+ +Q Y+ Sbjct: 188 MKRQDESCKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLT 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S +L ++ND+LD + ++AG+M+L + DL + + + K E I V Sbjct: 245 NLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVV 304 Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729 + G+ ++ + D +R+ QI ++ NA+ F+ +G+ + AAR + + + + G Sbjct: 305 NTRGEFPTYWIGDVERINQILVNLVGNAIKFTHRGAVTV--AARWVDERLLLRISDTGIG 362 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP ++F+ F V + Q G GLGL+I ++ + L G + SS + T Sbjct: 363 IPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVS 422 Query: 788 IP 789 IP Sbjct: 423 IP 424 >gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi] Length = 922 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A IK+ F+ ++S+ELR+PL +IGFT + + L + Q Y++ I S+ LLN Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 340 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++ND+LD + ++AG + L L++ L+EV +A HE + + + I FV Sbjct: 341 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 400 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737 D RL QI + +L NA+ F+ +G+ I K ++N + +K+ G I E Sbjct: 401 GDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLRVLLEIQIKDTGIGIAEAQQTQ 460 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F + Q G GLGL I + + GG +S S TT C + Sbjct: 461 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTV 513 >gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 922 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A IK+ F+ ++S+ELR+PL +IGFT + + L + Q Y++ I S+ LLN Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 340 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 ++ND+LD + ++AG + L L++ L+EV +A HE + + + I FV Sbjct: 341 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 400 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737 D RL QI + +L NA+ F+ +G+ I K ++N + +K+ G I E Sbjct: 401 GDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQ 460 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +F F + Q G GLGL I + + GG +S S TT C + Sbjct: 461 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTV 513 >gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 988 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 18/281 (6%) Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569 E ++ GT E+L + + Q + F++++ + E L A +++ K Sbjct: 550 EDVNISGTYEILCFRIF--------SNQIAVMFMDISSRKQEEFELENAKRAAESSNKAK 601 Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629 + F+ ++S+E+R+PL I+G LL+++ + +QS+Y++ +S L L++DILD Sbjct: 602 SEFLANMSHEIRTPLNGIMGMLQLLEST---DTDHEQSEYIDIALSSCRNLTRLISDILD 658 Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688 L+ ++ G + L ++ L EV + T++ I + + + V D RL Sbjct: 659 LSRIEHGNITLENHGFNISHLTEEVINTFITELSSKEIELSTSIEKNIPEIVYGDSGRLR 718 Query: 689 QIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 QI I N++ F+S G I + R V + G IPED +F F Sbjct: 719 QIIFNIFGNSIKFTSSGRIFINIDSLIQRQTIYLFIEVSDTGIGIPEDKLDEIFVPFTQA 778 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783 R+ GVGLGLSIV+ + GG +++ S+ D+G TT Sbjct: 779 DGSLTRKYGGVGLGLSIVKKLLIAMGGTITVESNIDKGTTT 819 >gi|224536870|ref|ZP_03677409.1| hypothetical protein BACCELL_01746 [Bacteroides cellulosilyticus DSM 14838] gi|224521536|gb|EEF90641.1| hypothetical protein BACCELL_01746 [Bacteroides cellulosilyticus DSM 14838] Length = 664 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 129/247 (52%), Gaps = 23/247 (9%) Query: 553 RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L + E LRKA E+ K F+Q++S+E+R+PL +I+GF+ +L + L+ K Sbjct: 425 RTLIKAEEELRKAKEVAEQSNWLKTMFIQNMSHEIRTPLNSIVGFSGVL----VDMLDEK 480 Query: 606 Q--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + QYV I ++S +LL LV DILD++ +D+ + ++ ++ + +N + SI Sbjct: 481 EDIGQYVALIESNSKLLLKLVGDILDISILDSEV-EIKHNAVDVNAC---CQASIDAAGA 536 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 + +++I + + ++ ++Q+ +L NA F+ +GS T+ + ++ I Sbjct: 537 SFDPGVRLIFEPACDELIINSNYSYIVQVLDNLLGNASKFTHEGSVTLAYEVKKEENQLI 596 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779 F+V + G IP + + VF RFV + Q G GLGLSI GG++ I + Sbjct: 597 FTVTDTGIGIPVEEQERVFERFVKLDNFSQ--GAGLGLSICRIVAERLGGYLRIDKGYTQ 654 Query: 780 GVTTINC 786 G I C Sbjct: 655 GTRVIFC 661 >gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 15/239 (6%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E A + E R+A K+ F+ ++S+E+R+P+ +IG LL + L ++Q Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YV+ I S LL L+N ILD + ++AG ++L+Y +L+ EV + + N Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720 + + L + V D RL Q+ ++ NA+ F+ G I + Sbjct: 261 LALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSC 320 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK++G IP + +F RF R+ G GLGL+I + L GG V + S Sbjct: 321 HFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379 >gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] Length = 1763 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +++ N+T L E A++ K+ F+ ++S+E+R+P+ IIG + L ++ Sbjct: 1007 VMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE 1066 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L + KQ YVE I +S LL ++NDILD + ++AG + + L+ +L ++ Sbjct: 1067 L---DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMF 1123 Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD 715 + K + + + ++ G D RL Q+ +++NA+ F+ +G + I + ARD Sbjct: 1124 SVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARD 1183 Query: 716 NG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F+V+++G + + +F F R+ G GLGL+I + + L GG Sbjct: 1184 EDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGE 1243 Query: 772 VSISS 776 + + S Sbjct: 1244 IGVDS 1248 >gi|269928580|ref|YP_003320901.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787937|gb|ACZ40079.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 645 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 16/238 (6%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 A++ A+++K+ F+ VS+ELR+P+T I G LL + + + + I+ S L Sbjct: 411 AIKDAEQLKDDFLSLVSHELRTPMTTIQGGALLLLQNGADLDEETRHEILTDIANESRRL 470 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGS 679 LV +++ LA + AG ++ + L LL ++ + E+ + V D LG Sbjct: 471 AGLVENMVQLANIRAGRFGMDSEPVHLRTLLQRAIDAMQEQDPEHPFVLDVERDLLALG- 529 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSV 738 D RL Q+ +L NA+ ++ + + ++AAR DNG I SV+++G I E+ V Sbjct: 530 ---DPGRLDQVVRNLLHNAIKYAPARTPIEVRAARGDNGTVIVSVRDHGPGIDEEDLPFV 586 Query: 739 FNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 F RF RG++ G+GLGL + + I HGG + I +G T I+ +P+ Sbjct: 587 FERF----QRGKQAVLRHTAGMGLGLYLSKHLIEAHGGQIWIERPPDGGTRIHFSVPA 640 >gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226] gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226] Length = 984 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|83310972|ref|YP_421236.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945813|dbj|BAE50677.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1036 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 +T+ R ++ L EA A++ K+ F+ +S+ELR+PL I+GF LL+TS+ L Sbjct: 637 LTNLERHQQELRLAKEAADSANQAKSDFLSSMSHELRTPLNAILGFAQLLETSRSSPLTD 696 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 KQ + I LL L+N++LDLA ++AG + L+ + L +EV T+ + Sbjct: 697 KQRGQAQCIIKGGQHLLQLINEVLDLARIEAGNLALSLEEVEARPLFDEVMD--LTRAYA 754 Query: 665 NNIRIKVISDGKLGSFVA----DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 R+ ++ G+ + D R Q+ + SNA+ + + G TV L D + Sbjct: 755 GG-RVAMVDASVPGATASHLRVDYTRFKQVLLNLTSNAVKYGASGGTVTLTMEPGAADSV 813 Query: 721 -FSVKNNGSSI-PED--MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F V + G I PE + FNR + A + G G+GL+I + + GG + + Sbjct: 814 RFVVTDRGPGIAPEKQALLFRPFNRLGAEAT--EIEGTGIGLTISKQLVEAMGGRIGFET 871 Query: 777 SDEGVTT 783 + TT Sbjct: 872 ATGRGTT 878 >gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 575 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 129/229 (56%), Gaps = 14/229 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L N+ L+K + +KN F+ VS+EL++PLT I ++ L+ Q + ++ I Sbjct: 337 LENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDYD--RETQEEMLDLII 394 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ---SIATKMHENNIRIKV 671 + +V+D+LD++ +++G M + L ++++ V Q +ATK H I ++ Sbjct: 395 RNIDRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATK-HGIAIEREL 453 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFI-FSVKNNGSS 729 +D ++ AD+ +LL++F +L+NA+ F++ +G ++ +K + GDF+ SV + G Sbjct: 454 DNDPRVK---ADKDKLLRVFVNLLNNAIKFTADRGESIKIK-TEETGDFVEISVIDKGIG 509 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IPE+ + +F +F V + R + G GLGL+I++ I HGG + + S Sbjct: 510 IPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKS 558 >gi|293414270|ref|ZP_06656919.1| TMAO reductase system sensor TorS [Escherichia coli B185] gi|291434328|gb|EFF07301.1| TMAO reductase system sensor TorS [Escherichia coli B185] Length = 914 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G ++L++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F+ + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTLEVGSCFCLRLP 661 >gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel] gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel] Length = 469 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 9/244 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E + K+ F+ +VS+ELR+PL +IIGF++++++ LG + S+ +Y EYIS Sbjct: 220 LQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSE--EYKEYIS 277 Query: 615 ---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S LL+L+NDILD + +A + + + L+ +++ + + + + +K Sbjct: 278 DIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLSKIVDSSFTMVLPRAKDAKVELKK 337 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + +AD +R+ Q+ ILSN++ F+ +G V L + + + G I Sbjct: 338 EMPEEPVVMLADPKRMKQVIINILSNSVKFTPEGGLVKLCTEIRGEQLVVEISDTGIGIA 397 Query: 732 -EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 +D+ K SVF + + H + G GLGL + + + L G SI S T + Sbjct: 398 QQDLYKVMSVFGQ-ADSKHSRKYEGTGLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLTF 456 Query: 789 PSKE 792 P K+ Sbjct: 457 PHKQ 460 >gi|302518070|ref|ZP_07270412.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. SPB78] gi|302426965|gb|EFK98780.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. SPB78] Length = 391 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%) Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548 R++ +D + A I T ++ L G E+L + +Y + P P + V++ D+ Sbjct: 99 RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 154 Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 R TE++ A + V++ELRSPLT++ GFT L +K N Q + Sbjct: 155 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 202 Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666 +E + A + + L+ ++LD++ +DAG M+L + + V+ IA + Sbjct: 203 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRSCDR 262 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721 + V L + AD ++ Q+ S +L NA+ G TV + A G + Sbjct: 263 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 318 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 +V + G IPE+ VF RF + RG G GLGL IV+ + +HGG +++ + G Sbjct: 319 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 375 Query: 782 TTINCRIP 789 +P Sbjct: 376 ARFRFMLP 383 >gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99] gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia tasmaniensis Et1/99] Length = 909 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 15/232 (6%) Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611 E + A R+A E IK+ F+ ++S+ELR+PL +IGFT LKT+ LNS Q Y+ Sbjct: 277 VELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTA----LNSTQRDYLH 332 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I S+ LL ++ND+LD + ++AG + L L L+EV +A HE + + + Sbjct: 333 TIERSANNLLGIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTL 392 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NN 726 I + + D R+ QI +L NA+ F+ G+ I K A N V+ + Sbjct: 393 NIQSDVPDNIIGDPMRMQQIIVNLLGNAIKFTESGNIDIRVEKRASSNNRMELEVQIHDT 452 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 G I + +F F RR G GLGL I + +N GG +S S Sbjct: 453 GIGISDKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 504 >gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein [Synechococcus sp. PCC 7002] Length = 1076 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 9/247 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++ D +AE AL + EA A K+ F+ +S+E+R+P+ IIG +LL S+ Sbjct: 524 THSDIGDRKQAELALIDAKEAAEAAAHAKSMFLATMSHEIRTPMNGIIGMLNLLLYSE-- 581 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L ++Q ++ +S+ LL L+NDILD + ++AG ++L L+ + +A Sbjct: 582 GLTTEQQEHAHIALSSAESLLMLLNDILDFSKMEAGKLQLETVDFDLHQFFENFAKLMAF 641 Query: 661 KMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716 E + + G + GS D RL QI + ++SNA+ F+++G +I + D Sbjct: 642 AAQEKGLNLIFDLRGLRHGSIQGDPGRLRQILTNLVSNAIKFTNQGEVMIRCQTERVGDR 701 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS- 773 DF SV + G I + +F F RR G GLGL+I + + GG + Sbjct: 702 LDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAITQRLCQVMGGTIEV 761 Query: 774 ISSSDEG 780 IS+ EG Sbjct: 762 ISTPGEG 768 >gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] Length = 896 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N++ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] Length = 1122 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 134/256 (52%), Gaps = 17/256 (6%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +T ++T+ ++ R L E E+ +A+ K++F+ +S+++R+PL +IG T+L S Sbjct: 464 VTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNAVIGLTNLALYSPE 523 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----K 655 S K ++ ++ I+ SS +LL L+ND+LD++ +++G M+L + L + L+ V + Sbjct: 524 DS--KKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLSGVVTVTQ 581 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711 + ++ + I+ L D RL Q+ + +L NA+ F+ K + L Sbjct: 582 SQTGVRSQHFDVNVWNITHELL---CGDTVRLGQVLTNVLGNAVKFTPKDGEIYLDITEV 638 Query: 712 AARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767 ++D F+F V + G + + +F F N+++ +G GLG++I + ++L Sbjct: 639 PSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGLGMAITKRIVDL 698 Query: 768 HGGHVSISSSDEGVTT 783 GG + + S E TT Sbjct: 699 MGGTIRVESEPEKGTT 714 >gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39] gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39] Length = 984 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + ++S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677 >gi|88858788|ref|ZP_01133429.1| probable sensor/response regulator hybrid [Pseudoalteromonas tunicata D2] gi|88819014|gb|EAR28828.1| probable sensor/response regulator hybrid [Pseudoalteromonas tunicata D2] Length = 1483 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 17/260 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG--S 601 N+T+ ++ E L A +IK F+ ++S+ELR+PL I G +L+ SKL Sbjct: 720 NITERLKEEAELKLALHQADAASKIKTDFIANMSHELRTPLNAINGLLQILELSKLTQEQ 779 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ S E I + TI NDI+DL +V+ G + L L++LLN + + T Sbjct: 780 LSTLDSAKAEVIGLNQTI-----NDIMDLTSVERGELILEEQDFNLDELLNTIGTQLNTL 834 Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716 + I I +++ + D +L QI I SNA+ FS KG V + + R++ Sbjct: 835 ADDKPIEIHFSLTEDLPLAMHGDANKLKQILWNIASNAVKFSLKGEVVLSFSVTISNRNS 894 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ + G + +D + +F+ F V N++ Q G+G+GL+I + L GG + + Sbjct: 895 FWLNIAISDTGIGVNQDKLEQIFDLFTQVDNSNTRQYGGLGIGLTIASQLVKLMGGSIKV 954 Query: 775 SSSDEGVTTINCRI---PSK 791 S + +T +C + P+K Sbjct: 955 CSQLDAGSTFSCSVLMQPAK 974 >gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] Length = 731 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 18/254 (7%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+ +EK AL + + K+ F+ + +E+R+PL + G T LL ++L + +Q ++V Sbjct: 63 AEQKASEK--ALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTEL---SDQQKEFV 117 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL ++N+ILD + ++A ++L + L + EV + ++ + + + Sbjct: 118 NIIRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELA 177 Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------RDNGDF 719 + + S V D RL QI + ++ NA+ F+ +G VI ++ N + Sbjct: 178 YLLEPNTPSGIVGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGGEGEVNPNYEL 237 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F+VK+ G IP++ C +F F V + Q G GLGL I + L GG + + S Sbjct: 238 RFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSE 297 Query: 778 DEGVTTINCRIPSK 791 + +T N + +K Sbjct: 298 EGKGSTFNFTLRAK 311 >gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4] Length = 984 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A K++F+ +S+E+R+P+ ++G LL+ + +L + Q YV+ I+ S LL + Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682 +ND+LD + ++AG ++++++ L L+ E + + ++ E I + D + + Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D R+ Q+ + ++ N + F+ +G I ++ A D F+V+++G I E+ ++F+ Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F + A G+R+ G GLGL+I + GG + + S Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLDS 677 >gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] Length = 723 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 27/294 (9%) Query: 516 GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER--------ALTEKNEALRKAD 566 GT+++L+ + YS + N+ + +F +V V ER AL E + R A+ Sbjct: 250 GTVKILT---MTYSYVSAENSWDGIESFYSVGIDVTKEREEQERQSKALEEAYQTARVAN 306 Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624 K +F+ +S+++R+P+ I+G T + K + L+SK+ ++ I SS LLNL+ Sbjct: 307 SAKTNFLSSMSHDIRTPMNAIMGMTTIAKAN----LDSKEKVCSCLDKIDTSSQHLLNLI 362 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVAD 683 N++LD++ +++G + L + L++LL V + + + + + I+ + +AD Sbjct: 363 NEVLDMSKIESGKIDLTLEEVNLHELLKSVSEICRPLISQKHQEFRSSIAQVRHKEVIAD 422 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKS 737 +RL Q+ +LSNA+ ++ +G + L+ + FS + G I ED Sbjct: 423 GERLKQVMLNLLSNAIKYTPEGGRISLRINELYSPNPKKSQYEFSCIDTGIGISEDFRPY 482 Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 VF F + + +G GLG++I E+ + + G + + S + IP Sbjct: 483 VFEPFWRAEDPRISKSQGTGLGMAITENIVRMMNGTIRVESKTGAGSKFTASIP 536 >gi|154492920|ref|ZP_02032546.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC 43184] gi|154087225|gb|EDN86270.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC 43184] Length = 827 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 6/220 (2%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+++R+PL++IIG+ +LL + + +Q Y+E ++ S+ +L+LVN +LD +++ Sbjct: 346 ISHDIRAPLSSIIGYIELLLRRRP---DERQRYYLENMTGSANHILSLVNGLLDFHRLES 402 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSK 693 G M++ + L NE+ S + + + +G + D RL QI S Sbjct: 403 GQMEIQNVPFSVRTLFNEIYGSFRPIAEAKGLAFVLNMKEEGMDRIYSGDPIRLRQIVSN 462 Query: 694 ILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752 +LSNA+ F+ +G V I+K + N +V ++G IPE+ + +F F + + Sbjct: 463 LLSNAVKFTHEGRIVLIVKLSILNSQLTITVSDSGVGIPEEEQEKIFGEFARLSGTEKEE 522 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 G GLGLSI I L GG +S+ S + +P +E Sbjct: 523 GFGLGLSITRKLIELMGGTLSLKSVPGKGSDFTIVLPLRE 562 >gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2] gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2] Length = 484 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 35/345 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 +S+ V F G+I L+NP +SL WK E + G + A+ L Sbjct: 138 MSDAVFTFDRSGQIILTNPPAQSLLDIWKKLEWQ---GRDLEEFGASVPEPL-----LPL 189 Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559 F ++ +D V +Y + + + + +++R A+ Sbjct: 190 FHTVMDRGED---------------VGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDI 234 Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 K +++++ FV +VS+E+R+PL+ + G+++ L GS + + V+ I S Sbjct: 235 TEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLR 293 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLG 678 + LV D+LDLA ++AG + + +N+L+ V + + E + + D L Sbjct: 294 MGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPDQHLL 353 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734 AD RL Q+ + +L NA + G V + A + G+ +K+ G I + Sbjct: 354 LPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGIASED 413 Query: 735 CKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F+RF RG+ +G GLGL+IV + + HGG VS +S Sbjct: 414 LPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAAS 458 >gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 591 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 17/269 (6%) Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585 LE ++ LP++ V V LTE+ ++ +E++ FV +VS+ELR+PLT Sbjct: 336 LEAQVVRLPDSAPQAGAVAVFHD------LTER----KRLEEVRRDFVANVSHELRTPLT 385 Query: 586 NIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 I G ++ L G+L ++ +VE I+ +++ L L D+LDLA +++G +L Sbjct: 386 AIRGSSETLLG---GALENQHYAKHFVEMIARNASRLERLTQDLLDLAAMESGREELVKE 442 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 I L + V ++ E + ++ + +A R+ L Q +L NA+ ++ Sbjct: 443 AIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNLLDNAIKYTE 502 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIV 761 G V L G SVK++G+ I + +F RF ++ R Q G GLGL+IV Sbjct: 503 SGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGLGLAIV 562 Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790 + HGG V + S+ +T +P+ Sbjct: 563 KHIAQKHGGRVEVESTPGQGSTFTLVLPA 591 >gi|238785764|ref|ZP_04629737.1| Multi-sensor hybrid histidine kinase [Yersinia bercovieri ATCC 43970] gi|238713347|gb|EEQ05386.1| Multi-sensor hybrid histidine kinase [Yersinia bercovieri ATCC 43970] Length = 928 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + +A +A+ K + +S+E+R+PL +G +LL+ + +L ++Q Q E Sbjct: 383 ALAKSKQAAEQANRRKRMHLTTISHEIRTPLNGALGAVELLQNT---TLTTEQYQLAETA 439 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671 S LL ++N++LD + +++G M L+ L LL++ ++ +++ ++ + V Sbjct: 440 RQCSQSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLAVHSQVLSQSVILSTYV 499 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 SD L S D QRL QI +L NA+ F+ +G + L R + F+V++ G I Sbjct: 500 SSDVPL-SLELDSQRLKQILINLLGNAIKFTQQGH-ISLNIERQDKHLCFTVEDTGCGID 557 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +++F+ FV R G GLGL+I ++ + GG +++ S Sbjct: 558 IQHQQAIFSPFVQTC--DHRHGTGLGLTIADNLARMMGGEITLFS 600 >gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541] gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541] Length = 927 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 135/252 (53%), Gaps = 8/252 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 ++++ V+ E++L + +A +A++ K+ F+ VS+ELR+PL IIG +LL+ Sbjct: 425 VLIDISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRY--- 481 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ K + V + SS++LL +++DILD + +++ +K+ + D+ V + Sbjct: 482 DLSDKAVRLVSTMDNSSSLLLQIISDILDFSKIESEQLKIENKSFNCRDVFAFVLANYVP 541 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + +I + + + + +D RL Q+ S I++N++ F+ G V+L +D+ Sbjct: 542 LASKKHISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNSIKFTDSG-FVMLHVWKDSNYL 600 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +K++G + + +F+ F V + + G +G GLGL+I E INL G ++++S Sbjct: 601 KIEIKDSGIGMTPAVVMQLFDPFFQVYDQNNGH-KGTGLGLAICEKLINLMDGDIAVNSQ 659 Query: 778 DEGVTTINCRIP 789 +T RIP Sbjct: 660 AGLGSTFTIRIP 671 >gi|166712854|ref|ZP_02244061.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 916 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 K E +A K F+ + +E+R+P+T ++G ++LL + SL+ Q Y E I + Sbjct: 540 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 596 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVND LDLA +++G ++L+ + LL E++ +A + +R + G L Sbjct: 597 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLLAELEALMAPLAQDRGLRFS-LEIGLL 655 Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734 G A D R+ QI +L+NA+ F+ +G + L F V + G I + Sbjct: 656 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 715 Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F RF + R R G GLGL+I + GGH+ + S Sbjct: 716 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 760 >gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] Length = 779 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 140/269 (52%), Gaps = 20/269 (7%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFT 591 +PN++ MLT V+ S +R+ EK L +A + + F+ +S+ELR+P+ ++IG Sbjct: 181 IPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPIASMIGLL 240 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 +LL + N ++ + +S+ L LVNDILD + +D+ + L + DLL Sbjct: 241 ELLSYE---NRNIADDYKLKSLMSSAKNLQLLVNDILDYSKLDSQGISLVEEFVSYTDLL 297 Query: 652 NEVKQSIATKMHENNIRIKVI------SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705 ++ ++HE + R + + ++ + D RL QI + +LSNA+ F+ +G Sbjct: 298 GDL-----VRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFTEQG 352 Query: 706 S-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762 V ++A + N I V + G I D +S+F+ F +R+ G GLGL+IV+ Sbjct: 353 KIKVTVRATKQNISII--VDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLAIVK 410 Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791 L G++SI+S++ T++ +P K Sbjct: 411 KLTTLMSGYISINSTEGEGTSVMISLPLK 439 >gi|152988149|ref|YP_001351034.1| putative two-component sensor [Pseudomonas aeruginosa PA7] gi|150963307|gb|ABR85332.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 750 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 18/223 (8%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 AD K+ F+ +S+E+R+PL I+G +LL+ + LG + Q + ++ + LL ++ Sbjct: 255 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 311 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679 N++L A ++ L LL +V + + EN R+ + + DG G+ Sbjct: 312 NEVLHFARLEEAPDAPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 371 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMC 735 Q L Q+ + +L NA+ F+ G + + AR+ G SV ++G IPE+M Sbjct: 372 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARNAGGERLRLSVADDGIGIPEEMH 427 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F RF RR G GLGL+I + + GG + + S Sbjct: 428 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 470 >gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048] Length = 448 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ D+++ FV +VS+E +SPL++I GF+ L++ + ++ +Y++ I S Sbjct: 220 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D S Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIS 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ + S+ +NG + ++ +F Sbjct: 336 IEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEQEEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTVRVELP 447 >gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 956 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 15/248 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS------- 607 L +KN L + D +K F ++++ELR+PLT +I L + +L S QS Sbjct: 216 LEQKNLQLVEMDRLKTDFFSNITHELRTPLTLMIA--PLQRLQRLYPAGSPQSGNGGAPS 273 Query: 608 ----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + I ++ LL L+ND+LDLA+ + G M++++ L + QS+ H Sbjct: 274 SMLHDELTGIYQNALRLLKLINDLLDLASANVGRMRISHQRFSLRLFTGRLLQSVTNMAH 333 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 + ++ + L +D+++L +I +L NA+ F+ KG +V L N +F V Sbjct: 334 QGDVAVHQQMPEHLEMVDSDQEKLEKILLNLLFNAVKFTPKGGSVTLITNTVNDFLVFEV 393 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I + +F+RF RR G GLGL++V+ GG V S Sbjct: 394 IDTGIGISQQNLPFIFDRFWQADSSVTRRHPGTGLGLALVKELATRMGGRVEAESIQGAG 453 Query: 782 TTINCRIP 789 TT+ IP Sbjct: 454 TTMRVLIP 461 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754 L+++M S + + A+ + +++NG IP +F+ F + G+ G Sbjct: 839 LASSMTPDSAPPQIWISASSEGTATDILIRDNGPGIPATNLSRIFDPFFTTKPAGE--GT 896 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLS+ I HGG++S ++ G T R+P Sbjct: 897 GLGLSVCYRIITAHGGNISADAAPGGGTVFTIRMP 931 >gi|167919319|ref|ZP_02506410.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 354 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|167816182|ref|ZP_02447862.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 91] Length = 342 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A R L ALR + + S S+ELR+P+ ++ +L++ G L +Q + + Sbjct: 71 AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + S L ++NDILD A+++AG + + + + +L++ V +A H +R++ Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183 Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725 + D + + + D RL QI ++ N + ++ +G + A D+ D + ++ + Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G I D + +F F + A RG RR G GLGL+I L GG V+++S + T Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302 Query: 783 TINCRI 788 T RI Sbjct: 303 TATARI 308 >gi|150389093|ref|YP_001319142.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948955|gb|ABR47483.1| integral membrane sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 471 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 15/255 (5%) Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLT 585 +Y I AQ M+ + N ER + EK A + D+IKN F ++S+EL++P+ Sbjct: 179 DYVHIEKDYAQKMILYFN-------EREVAEKELVATLELDKIKNEFFGNISHELKTPVN 231 Query: 586 NIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644 I G LL +K G N +Y++ + + L+ LVN+++D +D+G LN Sbjct: 232 VIFGTVQLLDVQAKEG--NVCNDKYLKIMKQNCYRLIRLVNNLVDTTKLDSGFYDLNLQN 289 Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704 + + +++ + S+A + + ++ +D + D +++ +I +LSNA+ F+ Sbjct: 290 VNVVNVVESITLSVAQYVEGKGLTLEFDTDVEEKVLACDSEKIERIMLNLLSNAVKFTDI 349 Query: 705 GSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 G +I+ I SVK+ G I P+D+ K +F RF V + G G+GLS+V Sbjct: 350 GGKIIVNMTDKGSHIIISVKDTGIGISPKDL-KVIFQRFKQVDKSLTRNSEGSGIGLSLV 408 Query: 762 ESFINLHGGHVSISS 776 +S + +HGG V S Sbjct: 409 KSLVEMHGGRVYTES 423 >gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 992 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 18/228 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + AD+ K+ F+ +S+E+R+PL +IG + LL ++L KQ Y+ I +S+ Sbjct: 250 ELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTRL---TPKQEDYLAKIRSSADT 306 Query: 620 LLNLVNDILDLATVDAG---IMKLNYS-TIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 LL ++NDILD + ++AG I ++ + VL D++N + A K E + V D Sbjct: 307 LLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLE--FLLSVEDDV 364 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSI 730 G V D RL Q+ ++ NA+ F+ G V+L+ R N F+V++ G + Sbjct: 365 PFG-LVGDPLRLGQVLLNLVGNAVKFTESGE-VLLEVRRQPSTSQNARLRFAVRDTGVGL 422 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + + +F F RR G GLGLSI + + L GG + + S Sbjct: 423 TAEQQEGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRS 470 >gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222] gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222] Length = 808 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 12/221 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+P+ IIG + LL + +Q +YV+ ++ SS LL+L+ Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + ++AG ++L + + + +V+ + K + ++ ++ D K+ + V D Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGD 355 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +L Q+ + ++ NA+ F+ G ++ + F V ++G I ED +S Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415 Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 VF++F R G GLGL+I + + L G + ++S Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456 >gi|189468438|ref|ZP_03017223.1| hypothetical protein BACINT_04835 [Bacteroides intestinalis DSM 17393] gi|189436702|gb|EDV05687.1| hypothetical protein BACINT_04835 [Bacteroides intestinalis DSM 17393] Length = 792 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 17/257 (6%) Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +VT S R R L E N R A+E+ + + ++++ ++PL +I+G+ DLL S+L Sbjct: 245 DVTRSNRYRRQLEEAN---RFAEELLASREKLMLAITHDFKAPLGSIMGYADLL--SRL- 298 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +++ +Q Y++ + SS LL LV D+LD +D ++N T LL E+ S Sbjct: 299 TVDGRQRFYLDNMKTSSEHLLKLVTDLLDFHRLDLHKAEINRVTFHPARLLEEIYVSFEP 358 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + +K D +L G+F++D RL QI + +LSNA+ F+S+G + + GD Sbjct: 359 LTSAKGLSLKCEIDPELKGTFISDPLRLRQIVNNLLSNAVKFTSEGGITLTASFVPKGDP 418 Query: 720 IF-------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 F SV + G + + +F F G GLGLSIV + L G + Sbjct: 419 AFSGNHLKLSVIDTGKGMEPGDRERIFQEFTRLPGAQGEEGFGLGLSIVRMLVQLLEGRI 478 Query: 773 SISSSDEGVTTINCRIP 789 + S +T R+P Sbjct: 479 EVDSVLGKGSTFTLRVP 495 >gi|167764826|ref|ZP_02436947.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183] gi|167697495|gb|EDS14074.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183] Length = 1329 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 22/248 (8%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 +R ER EK E + ++K F ++S+ELR+PLT II L +S G ++ Sbjct: 797 IRMERLDREKKEEI---SQMKIRFYVNISHELRTPLTLIISPLQELLSSVTGHWEREK-- 851 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNEVKQSIATKMH 663 + YI ++ LL+LVN ++D + GI +L N VLN LN +S+A K Sbjct: 852 -LLYIQRNARRLLHLVNQLMDYRRAELGIFELRPSYANAYKRVLNSFLN--YESLAKK-- 906 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 +I S+ + + D L I + +LSNA ++ +G + +K R++ + + V Sbjct: 907 -KDIDYNFYSELQDEDVLFDGTYLDLIINNLLSNAFKYTEEGERIYVKLYREDKNVVLQV 965 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G IP+D + +F RF V N H G G+GLS+V+ + LH G +++ S Sbjct: 966 ADTGVGIPKDKQRKIFERFYQVENVHEGS----GIGLSLVQRLVELHHGQITLVSEVGKG 1021 Query: 782 TTINCRIP 789 +T + IP Sbjct: 1022 STFSIYIP 1029 >gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter bemidjiensis Bem] gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP, PAS, PAC, PAS and HPT domain-containing protein [Geobacter bemidjiensis Bem] Length = 1229 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 ++TF ++++ RAE L EA A K+ F+ ++S+E+R+P+ +G LL+ ++ Sbjct: 602 VVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTE 661 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L+ Q Y+E +S +LL ++NDILD + V+AG M L + + +L++++ Sbjct: 662 ---LSETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVA 718 Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD 715 + E I + D RL Q+ + SNA+ F+ KG + A A++ Sbjct: 719 QATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKGKVEVEVALLAQE 778 Query: 716 NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 G+ FSV + G + + +SVF F R+ G GLGL+I + L GG Sbjct: 779 QGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQLMGGR 838 Query: 772 VSISS 776 + + S Sbjct: 839 MWVVS 843 >gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] Length = 896 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721 D F D +R+ QI +LSNA F+ KGS + + + D+I Sbjct: 602 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWISI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 918 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT LN Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L L + L+EV +A H+ + + + I + + Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL Q+ + ++ NA+ F+ G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 10/239 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V D R ER L + A K+ F+ ++S+E+R+PL+ IIG T + + + Sbjct: 415 HVKDRAR-ERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQ---TPR 470 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + +++E I SS LL +VNDILD + ++AG M+ + L ++L+ + Sbjct: 471 PEVREHLELILDSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSR 530 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721 + +R+ + +L + D R++Q+ ++ NA+ F+ KG + GD + Sbjct: 531 QKGLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLV 590 Query: 722 --SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776 SV++ G IPE+ +F F + R +R G GLGL+I + + GG + + S Sbjct: 591 ECSVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRS 649 >gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1376 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 13/253 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R+ L EK L + + K+ F+ ++S+ELR+PL +++ LL + G L+ ++ Q+ Sbjct: 923 RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQF 982 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I S + LL L+NDILDL+ ++AG M + + L LL+ V + + + Sbjct: 983 ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLDRGLAF 1042 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDF 719 +V + + +D QRL QI +LSNA+ F++ G + + RD+ D Sbjct: 1043 EVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASGRVELRVNRIKDPDHRYVRDSDDV 1102 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + F+V + G I + +F F R+ G GLGLSI L GG + S Sbjct: 1103 VAFAVSDTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAES 1162 Query: 777 SDEGVTTINCRIP 789 +T +P Sbjct: 1163 EPGRGSTFTLYVP 1175 >gi|302418052|ref|XP_003006857.1| peroxide stress-activated histidine kinase mak1 [Verticillium albo-atrum VaMs.102] gi|261354459|gb|EEY16887.1| peroxide stress-activated histidine kinase mak1 [Verticillium albo-atrum VaMs.102] Length = 1773 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 19/223 (8%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K+ F+ ++S+E+R+PL I G L+ S LN +Q Y I S+ LL Sbjct: 1109 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDS---VLNEEQRDYTNTIQTSANSLL 1165 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y L+ +V + ++T + + + + + +++ Sbjct: 1166 MIINDILDLSKVDAGMMKLKYEWFHTRALIEDVNELVSTMAIAKRLELNYVVEQNVPTWI 1225 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNGDFIFSVKNNGSS 729 D+ R+ Q+ ++ NA+ F+S+G T +L + F++ + G Sbjct: 1226 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCRVYTSETAMLTP--NEIMLEFAIIDTGRG 1283 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 E+ + +F F + + Q G GLGL I + LHGG Sbjct: 1284 FTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1326 >gi|170700649|ref|ZP_02891646.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170134421|gb|EDT02752.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 730 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%) Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A+ + ++ V VT+ V A L N LR A++ K+ F+ + +ELR Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ + I ++ L++D+LD++ + G + L Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 ++ L D+++ + + + + R+ V +D D RL Q+ + +L+NA + Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 478 Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + G + ++A +G I V +NG+ IP D S+F F + + G+G+GL Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538 Query: 759 SIVESFINLHGGHVSISSSDEG 780 ++V S +NLHGG V S+ G Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560 >gi|115361278|ref|YP_778415.1| histidine kinase [Burkholderia ambifaria AMMD] gi|115286606|gb|ABI92081.1| histidine kinase [Burkholderia ambifaria AMMD] Length = 742 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%) Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A+ + ++ V VT+ V A L N LR A++ K+ F+ + +ELR Sbjct: 316 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 375 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ + I ++ L++D+LD++ + G + L Sbjct: 376 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 431 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 ++ L D+++ + + + + R+ V +D D RL Q+ + +L+NA + Sbjct: 432 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 490 Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + G + ++A +G I V +NG+ IP D S+F F + + G+G+GL Sbjct: 491 TMPGGDITVRATHGVDGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 550 Query: 759 SIVESFINLHGGHVSISSSDEG 780 ++V S +NLHGG V S+ G Sbjct: 551 ALVRSLVNLHGGTVRADSAGPG 572 >gi|320158481|ref|YP_004190859.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus MO6-24/O] gi|319933793|gb|ADV88656.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus MO6-24/O] Length = 1199 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +++D + E AL E N A +A E +N F+ VS+ELR+P+ ++G ++L + +L Sbjct: 640 FSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEIL-SHRLS- 697 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 NS+ Q ++ S+ L VNDILD + ++A ++L+ + + L V +S Sbjct: 698 -NSESQQLLDNAICSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEAS 756 Query: 662 MHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++ V + +++ D R+ QI S +LSNA+ F+ G + A +N Sbjct: 757 AQLKGLQFDV--HWQPTAYIDAQYDALRVNQIVSNLLSNAVKFTEVGQIKVAIACDENA- 813 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + + G + E VF FV RR G GLG+SIV+S ++L GG ++ S Sbjct: 814 LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFYS 873 Query: 777 SDEGVTTINCRIPSK 791 E T ++ IP K Sbjct: 874 ELEQGTKVSVWIPVK 888 >gi|332829445|gb|EGK02094.1| hypothetical protein HMPREF9455_01728 [Dysgonomonas gadei ATCC BAA-286] Length = 576 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 3/293 (1%) Query: 498 DLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 DL +I D K +G L++ SD Y + + + T N+T+ + L Sbjct: 282 DLIRTLIVELIDPLAKRDEGPLKIFSDDKQSYFEKEIIHIEINKTGENITELI-GYVILL 340 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + ++ D K +F+ +S+EL++P+++I T LL+ ++ G LN +Q Q V+ I Sbjct: 341 KNITIFKELDSAKTNFIATISHELKTPISSIKMSTQLLEHNETGILNDEQKQLVDGIKED 400 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 ST LL + ++L+++ V+ G ++LN + ++ ++ + I+++V + Sbjct: 401 STRLLQITGELLNMSQVETGNIQLNIQSTDPGLIVRYAIDTVKLQAEHKRIKLQVDMEPD 460 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + VAD ++ + L+NA+ +S + S + + R+N +FSVK+ G I K Sbjct: 461 IPLIVADAEKTAWVLINFLTNAIRYSMEDSDIEVSLRRENKGALFSVKDFGKGIDSRYKK 520 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F R+ + G GLGL+I + FI GG + ++S+ +T IP Sbjct: 521 KIFERYFQ-IPGSLKSGSGLGLAISKEFIETQGGTIGVNSNPGMGSTFFFIIP 572 >gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 896 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|331682500|ref|ZP_08383119.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] gi|331080131|gb|EGI51310.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] Length = 904 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 9/219 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA++ K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 FV + G+R G GLGL+I GG +S +S+ E Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPE 641 >gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 651 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 128/256 (50%), Gaps = 10/256 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T +VT + E L E + A+ K F+ ++S+E+R+PL I+G L+ + Sbjct: 234 TIQDVTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALEDT--- 290 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 + +++Q +++ +S L L+NDILDL+ ++AG +++ L++L+ +++ + Sbjct: 291 APSAEQQRFIGAAIRASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASIEELFSY 350 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 + + + ++ G + D R+ QI ++ NA+ F+++GS + ++ Sbjct: 351 SARKKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEPIRVEEQ 410 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773 +F+V + G IPE + + F +GVGLGLSIV+ L G V+ Sbjct: 411 RIRLLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRLMNGEVT 470 Query: 774 ISSSDEGVTTINCRIP 789 + S + TT++ +P Sbjct: 471 LESREGHGTTVSLSLP 486 >gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 808 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 3/232 (1%) Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 RK DE +KN FV VS+ELR+PLT+I G ++ G L K + + + L Sbjct: 442 RKKDEAMKNEFVATVSHELRTPLTSIRGALGIILGKFSGELPDKTQKMLTLALRNCERLT 501 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDILD+ +++G M +++ L ++ + + I + SD + Sbjct: 502 LLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGYAKHHQITVTFESDTETAYIN 561 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD R+ Q+ + +LSNA+ +S G V + + F + ++G+ IP + + +F R Sbjct: 562 ADSTRMQQVMANLLSNAIKYSKSGGEVNVTLENNGSSFRVEITDHGAGIPPEFHEHLFTR 621 Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RR G GLGL+I +S I H G + S + T +P++ Sbjct: 622 FSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVPKQGATFFFTVPNE 673 >gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 611 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 14/241 (5%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYIS 614 EK EA R+ FV +VS+ELR+PLT I +T+ L+ G++ + ++V I Sbjct: 374 EKLEASRR------EFVANVSHELRTPLTTIKSYTEALED---GAMEDPELGPRFVSVIQ 424 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + + ++ LV D+L L+ D+ +L + ++L +V + +M E I+ + Sbjct: 425 SQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIA 484 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPED 733 + + DR ++ Q+ ++SNAM ++ +G + L+A ++ SV++ G IP+ Sbjct: 485 NDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKK 544 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V A G GLGLSI + HGG +S+ S T + +P++ Sbjct: 545 DLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLPAE 604 Query: 792 E 792 + Sbjct: 605 K 605 >gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC 35469] gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia fergusonii ATCC 35469] gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253] gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ECD227] Length = 918 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT L LKT L Q ++ I S+ LL Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680 ++ND+LD + ++AG + L L L+EV +A H+ + + + G + + Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNV 402 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736 + D RL QI + ++ NA+ F+ +G+ IL K A N V ++ G IPE Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + +N GG +S S Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504 >gi|162448801|ref|YP_001611168.1| hypothetical protein sce0531 [Sorangium cellulosum 'So ce 56'] gi|161159383|emb|CAN90688.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 1152 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTIL 620 ++ A+ +K+ F+ VS+ELR+PL I+G+ +++ GSL+ +++ + + ++ Sbjct: 766 VQDANRLKDEFLGTVSHELRTPLNAILGWARMMQA---GSLDRVAETRALSAVERNAEHQ 822 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 + L++++LD + V G +K+ + L + +SI + I+ D + G F Sbjct: 823 VTLIDELLDASQVVTGTLKIERLAVELTLPVQTAVESILPSAAGKGVAIETRLDPE-GVF 881 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 V D RL Q+ +LSNA+ F+ G V ++ ++D V ++G I D VF Sbjct: 882 VEGDPARLQQVVWHLLSNAVKFARPGGLVQVQLSQDERFAEIKVIDDGEGISADSLPHVF 941 Query: 740 NRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 RF + G RR GLGLSIV + LHGG V ++S+ G TT ++P Sbjct: 942 ERFRQEDNSGARRHGGLGLGLSIVRHIVGLHGGMVRVTSAGPGRGTTCTVQLP 994 >gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 1370 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 14/254 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A + L + + L A K+ F+ ++S+ELR+PL +++ LL + +L KQ +Y Sbjct: 790 QARQELETRAQELSLASRYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEY 849 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I ++ + LL L+NDILDL+ V+AG M ++ + L LL+ V+ + + ++ Sbjct: 850 AGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVPLRRLLDYVEATFRPMTSQKSLEF 909 Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNG 717 V + G + D RL Q+ +LSNA+ F+ +G V + R+ Sbjct: 910 AVSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGRVELLIEPAQAHDVPVSVHREGA 969 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F VK+ G I +++F F R+ G GLGLSI +L GG V++ Sbjct: 970 VVAFHVKDTGIGIAAHQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVE 1029 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 1030 STPGQGSTFTLYLP 1043 >gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum] gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum] Length = 1555 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 12/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKL 599 V++ D+ A + L ++ LR+A+EI ++ F+ VS+E+R+P++ I+ +L S Sbjct: 645 VSIIDTT-ARKKLIIADQQLRRAEEINDAKIRFLTTVSHEVRTPISGILSSVGILDES-- 701 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 ++S Q +Y+ +I S+ LL+L+ DILD + ++AG M+L L +L + + Sbjct: 702 -LVDSNQREYLGFIKDSADYLLDLITDILDFSKIEAGKMELERVEFNLLKMLEDSINIVY 760 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714 H+ I + + + F + D R+ Q+ LSNA+ F+SKG ++ ++ Sbjct: 761 RNAHDRGINVIHFVEPDVPIFLIGDSHRIKQVLLNYLSNAIKFTSKGQVMVKVSLVEKTN 820 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 + +FSV+++G I ++ + +F F Q G GLGLSI + + GG V Sbjct: 821 EGIKVMFSVEDSGVGIKDEFQEQLFQPFHQVGSLRQYLGTGLGLSISKRLTAMMGGEVGF 880 Query: 775 SSS 777 S+ Sbjct: 881 RST 883 >gi|300868943|ref|ZP_07113548.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300333066|emb|CBN58740.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1739 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 35/269 (13%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + A A+ K+ F+ +S+ELR+PL I+GFT ++ S+ +LN +Q + + I Sbjct: 1231 ALQQAAIAADTANRAKSEFLAAMSHELRTPLNAILGFTQVM--SRDPTLNQQQQENLGII 1288 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + + LLNL+NDIL+++ ++AG +LN S L LL +++ + K + + Sbjct: 1289 NRAGEHLLNLINDILEMSKIEAGQAELNLSNFDLIGLLFSLEEMLRLKAESKGLHLIFDI 1348 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD----------- 718 + +V AD +L QI IL NA+ F+ KGS + K N Sbjct: 1349 APDVPQYVQADEGKLRQILINILGNAVKFTEKGSVTLRVRNKEIATNASISDRLELTDRV 1408 Query: 719 -----------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSI 760 F VK+ G I + +F F + R ++G GLGL I Sbjct: 1409 ESINYPSSLLPITSSLCLQFEVKDTGPGISPEEINQLFEAFTQTETGRKSQQGSGLGLPI 1468 Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789 + F+ L GG +++ S + T IP Sbjct: 1469 SQKFVQLMGGDIAVRSILKWGTAFTFDIP 1497 >gi|299537380|ref|ZP_07050678.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] gi|298727172|gb|EFI67749.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1] Length = 462 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 5/235 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 EA+++ DE + +F+ VS+ELR+P++ + G+++ ++ + ++ + ++ I + Sbjct: 230 EAIQQEDEAQKTFLATVSHELRTPISYVKGYSEAMQNGIITE--GQKEETIQLIVREANR 287 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + L N++L LA + +++ I L + L EV++ + + ++ NI + + D L Sbjct: 288 MERLTNELLQLARTENEQTEIDLYPIPLGETLREVQKILTHQANKKNITLYLDVDDAL-I 346 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD +L QIF I+ NA+++S + S V + AA G ++++ G IP + V Sbjct: 347 IEADEVKLKQIFINIIENAINYSHENSKVEIVAAEKAGSAQITIRDYGIGIPAEDLTHVT 406 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V+ A G GLGLSIVE + G + I S E T++ R+P E Sbjct: 407 ERFYRVNKARSRADGGSGLGLSIVEQLLKQLQGTLEIESVVEKGTSVKIRLPLME 461 >gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 765 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 9/237 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N + +E + E A++ K+ F+ +S+ELR+PL I+GF+++LK S +N Sbjct: 295 NTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKS----MN 350 Query: 604 SKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q + + I S LLN++N+IL+L+ ++AG +++ L +L+ ++ A + Sbjct: 351 ATQEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIFAFR 410 Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E + K+I D L V D RL QI +LSN++ F+++G + L + Sbjct: 411 CKEKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNEGE-ISLYLYEKSQKLF 469 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776 F +K+ G I K VF F H + G GLGLSI + + L G + S Sbjct: 470 FEIKDTGIGIESKDLKRVFKPFEQIKHDDYNKNGTGLGLSITKELVTLMNGSIYAKS 526 >gi|150008612|ref|YP_001303355.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937036|gb|ABR43733.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 638 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 19/248 (7%) Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +A++AL + E+L +A D +K+ F+ ++S+E+R+PL IIGF+ L+ ++L Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ QY I+ ++ +LL LVNDILDLA +++G + + + L DL+ + + + + Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIF 721 E I K D++RL Q IL NA+ F+S G I N D Sbjct: 513 PE-GIEFKEKCPDTPICLYTDKERLYQALENILKNAIKFTSAGFIEIGYEYSTNAQDVRL 571 Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V++ G I PED +++F RF Q G GLGLSI ++ + G + + S Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 628 Query: 781 VTTINCRI 788 CRI Sbjct: 629 ----GCRI 632 >gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 591 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 14/265 (5%) Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587 ++I PL + + N+ +V R +TE++ + +++++ F+ +VS+ELR+P+ + Sbjct: 336 FTISPLYSGE------NIRGAVAVIRDMTEQH----RLEKLRSDFIANVSHELRTPIAML 385 Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 G+++ L ++++ + I S + LV D+LDLA +++G M L + + Sbjct: 386 QGYSEALMDDDFIQDLEERNEITKIIYDESKRMGRLVTDLLDLARMESGHMTLYKDELPI 445 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706 N + Q A E +IR+ S+ + + D R+ Q+ + ++ NA+ + +GS Sbjct: 446 NSTFERITQKFAQVAKEKHIRLLFDSEFNDDAMINIDEDRIEQVLTNLVDNALRHTEEGS 505 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764 V +K ++ SV++ G IP+D VF RF A + G GLGL+I + Sbjct: 506 -VTVKVEQEPTFAKISVQDTGHGIPQDDLPYVFERFYKADKARTRSKGGTGLGLAIARNI 564 Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789 I H G++ + S + TT +P Sbjct: 565 IKAHSGNIMVDSVLKEGTTFTFYLP 589 >gi|329939380|ref|ZP_08288716.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] gi|329301609|gb|EGG45503.1| putative two-component system sensor kinase [Streptomyces griseoaurantiacus M045] Length = 595 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 13/239 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ E L + + S V V++ELRSPLTNI + L+ ++ G + Q ++ + Sbjct: 364 LAERRELL---EAQRTSMVNDVAHELRSPLTNIRSW---LEAAQDG-IAPTDRQLLDLLF 416 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L ++++D+ DLA D G + L+Y + + D+L++V ++ + +++ D Sbjct: 417 DEAGALQHIIDDLRDLAAADTGELALHYEMVRVADILDQVVAGQRSRAEHAGVALEIHVD 476 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PE 732 AD RL Q+ ++ NA+ + G + L R GD + V++ GS I PE Sbjct: 477 EDKHEVCADPLRLRQVIGNLVGNAVRHTPSGGRISL-TCRHLGDEVRIEVRDTGSGIAPE 535 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D+ +F+RF RR G GLGLSI HGG +++ S+ TT +P Sbjct: 536 DL-PHIFDRFWRAEKSRNRRTGGSGLGLSIARKLTEAHGGTITVRSTLAEGTTFTVAVP 593 >gi|319900476|ref|YP_004160204.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415507|gb|ADV42618.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 725 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%) Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L +KN+ L + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+ + + Sbjct: 478 RQLQKKNQELAVARDEAQSANRMKSLFIQNMSHEIRTPLNSIVGFSQLIANPDMELEPEE 537 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE- 664 Q +Y E I ++S +L LVND+L L+ + +G ++ DL E SIAT H Sbjct: 538 QQEYSELIVSNSELLTTLVNDLLGLSELQSGKYVTKIASHSCADLCRE---SIATVTHRK 594 Query: 665 -NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721 ++++ D + + D QR+ Q+ L+NA + +G + + + G F Sbjct: 595 PQDVKLYYTCDTPPDYTILTDGQRVRQVLINFLTNAEKHTERGEIHLHCSLTEVPGSVTF 654 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 SV + G IP + + +F RF Q G GLGLSI + G V + +S +G Sbjct: 655 SVADTGCGIPPEQAEHIFGRFEKLDDFSQ--GFGLGLSICRLIADYMGAAVKLDTSYKG 711 >gi|70733602|ref|YP_257242.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens Pf-5] gi|68347901|gb|AAY95507.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens Pf-5] Length = 594 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 23/353 (6%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498 +D + +G+ + GR++ NP + ++ RL G + + R E D + Sbjct: 262 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDQERLGQG-----LGSALQR--PELD--E 312 Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556 ++ + ER +E+ +S +L YS+ P+ + Q +L V V V +RA Sbjct: 313 QLQLVLRGGNLERAPDDLDIEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF- 371 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 + +++ FV S+ELR+P+T + LL+ S+++ + ++ Sbjct: 372 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFPEESRETDLLNTVNEE 422 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L+ L+ND+L+ + G+ KL + L +LL + + + + + I + + Sbjct: 423 MQRLMQLINDLLNFSRYQNGLQKLTLAPCPLEELLVQAQGRFSEQAQQQGIDLLLEIQAP 482 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L ADR +L ++ ++ NA+ ++ + L+A R I SV++NG I Sbjct: 483 LPRLHADRAQLERVLDNLIDNALRHTASEGQIRLQARRHGERVIVSVEDNGEGIAYGQQG 542 Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV + + G GLGL++ + + LHGG + + S T +P Sbjct: 543 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYLALP 593 >gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 470 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L + ++++ FV +VS+ELRSPLT+I G+ D + + K Y++ + + + Sbjct: 241 LEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPK--EKACDYLKIVQKETRRMS 298 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ND L++ +++G LN + +N+L+ ++ E ++ +KV + + Sbjct: 299 RLINDFLEMTKLESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVI 358 Query: 682 ADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVF 739 AD+ ++ Q+ + ++ NA+ FS KG I +D+ FI ++K+NG I PED + ++ Sbjct: 359 ADKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKAFI-TIKDNGIGISPEDQ-EHIW 416 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +RF + G GLGL IV+ IN H + + S T +P K+ Sbjct: 417 DRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLPMKK 469 >gi|237743472|ref|ZP_04573953.1| sensory transduction protein kinase [Fusobacterium sp. 7_1] gi|229433251|gb|EEO43463.1| sensory transduction protein kinase [Fusobacterium sp. 7_1] Length = 623 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 6/241 (2%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V + L+ E A++ KN F+ +S+E+R+PLT IIG++ +L ++ ++SK+ Sbjct: 140 VERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-LKEINDVSSKEK- 197 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I S LLN N++LD + +++G + LNY T + L ++ NI Sbjct: 198 -LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKMKNIN 256 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 K+ S +D+ ++ +I I+ NA+ ++ KG V+ + F+V ++G Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG-FVLCDIFVEKNTLFFNVYDSGI 315 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 + E+ K++F FV + ++ G GLGLSI + + + G + + S +T +I Sbjct: 316 GMSEENIKNIFESFVQIGN--EQSGAGLGLSITKKLLEVLNGKIEVESKVGIGSTFKIQI 373 Query: 789 P 789 P Sbjct: 374 P 374 >gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] Length = 2272 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A K+ F+ ++S++LR+P+ +IG ++LLK + L + +Q +YVE I + LL L+ Sbjct: 1829 AARAKSIFLANISHDLRTPMNGVIGLSELLKGTYL---DKEQDEYVESIRVCADTLLTLI 1885 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--A 682 NDILD + ++AG MK++ + L ++EV +++ + + D V Sbjct: 1886 NDILDFSKLEAGKMKISTVPLNLKQTISEVIRALRYTHRDRGLETIENLDKVPPELVVLG 1945 Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSV 738 D RL QIF +LSN+ F+ GS TV + AR+ + SV + G IP++ + Sbjct: 1946 DPVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGRVRLECSVSDTGIGIPDEQKARL 2005 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 F F S A R G GLGLSI ++ I ++ GG + + S TT+ Sbjct: 2006 FRPF-SQADASTERSYGGSGLGLSICKAIIEDVLGGAIWLESKPGVGTTV 2054 >gi|168703335|ref|ZP_02735612.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1244 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ +L +AD K++F+ +++ELR+PL I LL + L +++ + ++ Sbjct: 860 QREASLLRADVQKDAFLATLAHELRNPLAPIADVAHLLGSGGLDDGRLREAGAL--LAGQ 917 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 +L LV+D+ DL+ V G ++L + L D++ ++ A + R+ + + Sbjct: 918 VRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIRAAGHRLSLERRSE 977 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 D RL Q+ S +L+NA ++ G V L RD + + V+++G+ I + Sbjct: 978 PVIVRGDAVRLAQVVSNLLTNAAKYTPPGGNVWLALDRDGTEAVVRVRDDGAGIDPALLP 1037 Query: 737 SVFNRFVSNAHRGQRR-------GVGLGLSIVESFINLHGGHVSISSSDEG 780 VF+ FV +RR G+G+GL++ + + LHGG + S+ G Sbjct: 1038 RVFDMFVQ-----ERRLQEQAPGGLGVGLTLAQQIVELHGGAIDARSAGPG 1083 >gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] Length = 937 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616 K AL +A IK+ F+ ++S+ELR+PL +IGF LLKT L+S Q YV I S Sbjct: 292 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYVNTIEKS 346 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 +T LL +NDILD + ++AG M L L + L++ ++ + +I + V D Sbjct: 347 ATNLLGSINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVDIDPS 406 Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731 + D R QI + ++ NA+ F+ GS +++A D V + G I Sbjct: 407 IPEDLSGDAMRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTGIGID 466 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ED + +F F RR G GLGL I + +N GG + S Sbjct: 467 EDQQELLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHS 513 >gi|148553325|ref|YP_001260907.1| integral membrane sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] gi|148498515|gb|ABQ66769.1| integral membrane sensor signal transduction histidine kinase [Sphingomonas wittichii RW1] Length = 529 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 6/229 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RAL++ + A+R+ + +F V++EL++PL ++ D L K +L Q Q ++ Sbjct: 287 RALSDMSMAIRQRIDATEAFAADVTHELKNPLASLRSAVDSLGIVKEPAL---QKQLIDV 343 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I L L+ DI + + VDA + + + ++ L ++ + + + ++R+ Sbjct: 344 IRDDVGRLDRLITDIAEASRVDAELARARFESVDLGTMIEGLLTTREERGRNGDVRVAFA 403 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + V D RL ++ ++ NA+ FS V + A RD D + V++ G +P Sbjct: 404 RPHRGTAVVFGDGSRLTRVIENLVENAVSFSPAAGLVQVAATRDGDDVVIRVEDEGPGVP 463 Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 D +++FNRF S+ G+ R GLGL+I ++ + H G + + D Sbjct: 464 PDAREAIFNRFHSDRPEGEEFGRHSGLGLAIAKAIVEGHNGSIVATDRD 512 >gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1168 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTMLTFVNVTD-SVRAERALTEKN--EALRKADEIKNSFVQHVSYELRS 582 +E +IP+ + + D S R E L KN E + K+ F+ +S+E+RS Sbjct: 458 IELKMIPVQLGDDIFLTAFIHDISKRMEYELQLKNAKEEAESGSKAKSRFLATMSHEIRS 517 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G +LL S L N +Q Y + + T LL+ +NDILD + ++AG M L Sbjct: 518 PLNAVLGSVELLLDSML---NKEQRLYAQTAREAGTALLSTINDILDFSKIEAGQMALET 574 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 + L+++V Q +A K E + + + + V D QRL Q+ ++ NA+ F Sbjct: 575 ESFSPAKLVSQVMQILAPKAAEKGVNLATFINRNVPEIVKGDAQRLRQVLHNLVDNAIKF 634 Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 S G I + +V + G + + +F F V + H +G G Sbjct: 635 SDSGCISVEMWIPDSHHQEVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQHNTSYKGTG 694 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I + GG + +SS Sbjct: 695 LGLAICSELITMMGGKIELSS 715 >gi|116052651|ref|YP_792966.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14] gi|237651846|gb|AAM15534.2|AF482691_3 putative sensor kinase [Pseudomonas aeruginosa] gi|115587872|gb|ABJ13887.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 1084 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 14/246 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F ++T AE AL+ A A + K F+ +S+E+R+PL G L+ Sbjct: 463 LCVFNDITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPL---YGVLGTLELLD 519 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +LN +Q Y+ I +SS L+ L++D+LD++ ++AG M L + DL+ EV + Sbjct: 520 LTTLNERQRAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNF 579 Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---AR 714 A +++ D ++ + D R+ Q+ + +++NA+ F+ G V+L+ +R Sbjct: 580 AASAMAKDLQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGR-VVLRVKLLSR 638 Query: 715 DNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 ++G + + V + G I + + +F F VS AH G GLGLSI + GG Sbjct: 639 NDGRALLQWQVADTGIGIAHEQQERLFEAFYQVSGAHHAG--GTGLGLSICWHLAEMMGG 696 Query: 771 HVSISS 776 H+ + S Sbjct: 697 HLRMVS 702 >gi|77745269|gb|ABB02535.1| signal transduction histidine kinase [Lactobacillus reuteri] Length = 381 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 138/263 (52%), Gaps = 15/263 (5%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 N Q ++T VN + DS A R++ ++ RK ++ K+ + +VS++LR+PLT+IIG+ L Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ + S +Y + + LV+D+ + V +N I LN L+ + Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233 Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711 + S + I I VI + + AD ++L ++F+ ++SNA + + S + + Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHG 769 A ++N + V N+G+ IPE +F R + + A R + G GLGL+IV+S ++LH Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERXYRAEASRSRATGGTGLGLAIVKSIVDLHH 351 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G V + +S+E T +P K+ Sbjct: 352 GSVKV-TSNEDETAFIVTLPLKQ 373 >gi|238756595|ref|ZP_04617893.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri ATCC 29473] gi|238705193|gb|EEP97612.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri ATCC 29473] Length = 779 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 16/249 (6%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL A K +F+ +S+ELR+PL I+G + +L + LN +Q +Y Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLNDEQLKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+++ ++ ++L+ I + +++ + ++ Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGLKF 380 Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727 + G+L + D RL QI ++ NA+ F+ +G V+ + R+N D IF V+++G Sbjct: 381 LMEPQGRLPEKIITDGTRLRQILWNLIGNAVKFTQQGQIVV-RIYRENTDRLIFEVEDSG 439 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT-- 782 IPED +F + R R G G+GL++ + GG + + S+ +GV Sbjct: 440 MGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDIMVKST-QGVGSC 498 Query: 783 -TINCRIPS 790 T++ + P+ Sbjct: 499 FTLSIKAPA 507 >gi|323341543|ref|ZP_08081781.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644] gi|323091027|gb|EFZ33661.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644] Length = 392 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 122/235 (51%), Gaps = 5/235 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E R+ + K+ + +VS+++R+PLT+IIG+ L++ ++ GS + +Y S Sbjct: 143 EEERRIERSKDELITNVSHDIRTPLTSIIGYLGLIEDNQYGS-EEELKKYTHTAFLKSKQ 201 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +LV+D+ + V + L+ I L +L ++ S + ++ + ++V + Sbjct: 202 MKSLVDDLFEYTKVRQPDLPLSIVKIDLGAMLEQIGASYELEGNKKGMEVEVSVPDEPVF 261 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSV 738 AD ++L ++F+ ++SNA + G V L + + + + ++N+G IPED + Sbjct: 262 MEADGEKLARVFNNLISNAFKYGRDGKHVYLSVKQLSSKEVVVKIENDGEPIPEDAVPQL 321 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F+RF R G GLGL+IV+S + H G++ + S+ +T+ P++ Sbjct: 322 FDRFYRAESSRSRETGGSGLGLAIVQSIVERHNGYIYV-ESNAALTSFVMHFPTE 375 >gi|171320502|ref|ZP_02909531.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171094265|gb|EDT39343.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 734 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A+ +++ V VT+ V A L N LR A++ K+ F+ + +ELR Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ + I ++ L++D+LD++ + G + L Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + L D+++ + + + + R+ V +D D RL Q+ + +L+NA + Sbjct: 420 KEALRLADIVDRAVEVASPLLEQRRHRLHVDADPDACCH-GDPVRLSQVVANLLTNAAKY 478 Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + G + ++A +G I V +NG+ IP D S+F F + + G+G+GL Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538 Query: 759 SIVESFINLHGGHVSISSSDEG 780 ++V S +NLHGG V S+ G Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560 >gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 856 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 12/218 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 KN F+ +S+E+R+P+ +IG D+L G L +Q +E I AS LL ++NDIL Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLAD--GGLTHRQRDSIETIRASGETLLTIINDIL 541 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687 D + ++G ++L L+ LL + + + ++++ G++ + V D RL Sbjct: 542 DFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARL 601 Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740 QI ++ NA+ F++ G+ +V + AAR + F+V++ G IP + +F Sbjct: 602 RQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLFK 661 Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F RR G GLGL+I + L G + + S Sbjct: 662 PFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVES 699 >gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1356 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 19/231 (8%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------------KLGSLNSKQSQ 608 ++ D +K F+ VS+ELR+PLT+++GF L++ K+ + S+ Sbjct: 882 KEVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTLFPLIPTNDHKIQRTLKQVSE 941 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V I + L L+ND+LDLA ++AG ++ + + D+L + +N++ Sbjct: 942 NVNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVVDVLERAIIATTALFEQNDVE 1001 Query: 669 -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 IK I +G L + DR RL+Q+ ++SNA F+ KG V K R + S+ ++G Sbjct: 1002 LIKSIDEG-LPQIIGDRDRLIQVVINLISNAAKFTDKG-FVYCKVRRTGSEITVSIIDSG 1059 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I E +F +F N + +G GLGL I + + H G + + S Sbjct: 1060 IGISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVEHHQGQIWVES 1110 >gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451] gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451] Length = 701 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 15/254 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF T + AE+ K +A KA K++F+ +S+E+R+P+ ++G +L +L Sbjct: 300 TFNQKTVYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 352 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +KQ Q++ + S ++ L+N+ILD + ++ G +L+YS L ++ +K ++ Sbjct: 353 --TAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 410 Query: 661 KMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 E ++ ++ SD + D+ RL QI +LSNA+ F+ +G + + + D Sbjct: 411 LCFEKGLQFQLHSDIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDE 470 Query: 720 IF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 F V+++G IP+D +F F RR G GLGL+IV+ L G VS+ Sbjct: 471 YFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSV 530 Query: 775 SSSDEGVTTINCRI 788 S T R+ Sbjct: 531 QSEVGQGTCFEVRV 544 >gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp. 30_2] gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp. 30_2] Length = 1080 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 8/238 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EKN+A+ +A + K+ F+ +S+ELR+P+++I+GF +LL +S+L K++ + A+ Sbjct: 586 EKNKAI-EATKAKSRFLASMSHELRTPVSSIVGFVELLSSSELSPAQRKEA--IALTGAT 642 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LL L+ ILD+ +++G ++ L+ L+ S + I + +S Sbjct: 643 AQSLLGLIGKILDVDKIESGKYQVVPQWTDLSQLIELQCHSFDALARQKGITLACVSQLP 702 Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIP 731 V D+Q L QI + ++ NA+ F+ +GS ++ ++G ++ + G I Sbjct: 703 ANERVFVDQQALRQILTNLVGNALKFTEQGSIHVTARLMPEGENHGTLTIAISDTGCGIS 762 Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E+ +F R+ Q+ G GLGL I + + L GG + + S TT +P Sbjct: 763 EEEQAGLFQRYAQGRCGRQQTGSGLGLFICKELVTLMGGTLELMSVPLQGTTFTITLP 820 >gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 15/239 (6%) Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E A + E R+A K+ F+ ++S+E+R+P+ +IG LL + L ++Q Sbjct: 144 RLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 YV+ I S LL L+N ILD + ++AG ++L+Y +L+ EV + + N Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720 + + L + V D RL Q+ ++ NA+ F+ G I + Sbjct: 261 LALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSC 320 Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F+VK++G IP + +F RF R+ G GLGL+I + L GG V + S Sbjct: 321 HFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379 >gi|32481651|gb|AAP84165.1| RcsC [Pseudomonas aeruginosa PA14] Length = 1084 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 14/246 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 + F ++T AE AL+ A A + K F+ +S+E+R+PL G L+ Sbjct: 463 LCVFNDITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPL---YGVLGTLELLD 519 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +LN +Q Y+ I +SS L+ L++D+LD++ ++AG M L + DL+ EV + Sbjct: 520 LTTLNERQRAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNF 579 Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---AR 714 A +++ D ++ + D R+ Q+ + +++NA+ F+ G V+L+ +R Sbjct: 580 AASAMAKDLQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGR-VVLRVKLLSR 638 Query: 715 DNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 ++G + + V + G I + + +F F VS AH G GLGLSI + GG Sbjct: 639 NDGRALLQWQVADTGIGIAHEQQERLFEAFYQVSGAHHAG--GTGLGLSICWHLAEMMGG 696 Query: 771 HVSISS 776 H+ + S Sbjct: 697 HLRMVS 702 >gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1182 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 6/219 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R + + K+ F+ ++S+E+R+PL IIG+ + L L + S E + S LL Sbjct: 560 RNSAQAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLNETEKRSS--AETVVRSGRHLLE 617 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 LVNDILD + +DA + ++ + L +LL+E++ A + E + +I D L + Sbjct: 618 LVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAFFAPRAREKGLDFSIICDYPLPEKIR 677 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 D R QI + NA+ F+ GS ++I++ R V + G + + +F+ Sbjct: 678 TDPTRYRQIIINLCGNALKFTENGSISLIIRCDRGAEKLYARVVDTGIGMKPEQLDRLFD 737 Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F S A Q G GLGLSI L GG + +SS+ Sbjct: 738 PFAQGSTAISRQYGGTGLGLSISRRLAELLGGDIRVSST 776 >gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102] Length = 2074 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 16/224 (7%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ L+ Sbjct: 1405 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1461 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y L+ +V + ++T + + + + + ++V Sbjct: 1462 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1521 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------FSVKNNGSSI 730 D+ R+ Q+ ++ NA+ F+++G D + F++ + G Sbjct: 1522 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPVVCNENEIMLQFAITDTGRGF 1581 Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 ++ + +F F + + Q G GLGL I + LHGG + Sbjct: 1582 TKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKM 1625 >gi|313496503|gb|ADR57869.1| KinB [Pseudomonas putida BIRD-1] Length = 588 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 13/266 (4%) Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L YS+ P+ + Q +L V V V +RA + +++ FV S+ELR+P Sbjct: 334 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 383 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T + LL+ ++++ +E I L L+ND+L+ + +G+ KL + Sbjct: 384 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 443 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++DLL + A + I + D L AD +L ++ +L NA+ ++ Sbjct: 444 PCAIDDLLEHAQLRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 503 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 G + L A R I SV++NG I +F FV + + G GLGL++ + Sbjct: 504 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 561 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + LHGG + + S T +P Sbjct: 562 IVQLHGGRMGVFSRPGQGTQFYMALP 587 >gi|270291050|ref|ZP_06197273.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4] gi|270280446|gb|EFA26281.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4] Length = 480 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 123/239 (51%), Gaps = 6/239 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E N+ +++ +E + +F+ ++E+R+PLT I G + L+ + + ++S + Sbjct: 240 KSLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGLLEGLEYDAIPEDSKEES--IRL 297 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + + L+ LVND LD + +KL+ + L + V + + K + N ++ V Sbjct: 298 MQRETKRLIRLVNDNLDYERIRTNKIKLDCQMVNLKQAVLRVVEQLGKKAEKENDQLIVE 357 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + + AD RL+QI I+ N + F+ G + +G I + +NG + E Sbjct: 358 MNSDVVVY-ADPDRLIQILFNIVQNGIQFTQNGQITVRAQNASDGTNI-QISDNGIGMTE 415 Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D K+++ R+ ++A R Q +G GLG++IV + +HGG + +SS+ TT P Sbjct: 416 DQIKNIWERYYKADASRIQTKGESGLGMAIVHELVQIHGGKIEVSSAPGRGTTFKLHFP 474 >gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis TXDOH] Length = 986 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 13/248 (5%) Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 AQ +L VN +T AE++L E A +A+ K+ F+ +S+E+R+PL +IG +L Sbjct: 469 GAQALLATVNDITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIGNLEL 528 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 +K G L Q + +E ++++S+ LL+++ND+LDL+ V+AG ++++ LL + Sbjct: 529 MKR---GPLADAQRRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCAVLLRD 585 Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712 V + + + I+ + D R+ QI + +L NA+ F+ GS + A Sbjct: 586 VTATFQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGSVTLFAA 645 Query: 713 ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 GD + ++ + G I ++F + R+ G GLGL++ +N Sbjct: 646 ----GDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRLVNAM 701 Query: 769 GGHVSISS 776 GG ++ S Sbjct: 702 GGEIAARS 709 >gi|297583784|ref|YP_003699564.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142241|gb|ADH98998.1| integral membrane sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 472 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 13/254 (5%) Query: 543 VNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599 V TD + + A + +L +AD+ K F+ +VS+ELR+PL+ + G++++L K K Sbjct: 218 VKTTDEIGQLADAFNQMTYSLDEADKKKQEFLGNVSHELRTPLSYLKGYSEVLLEKHRKG 277 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +L+ K ++E I A + L++D+LDLA ++ ++ + L L+ +V + + Sbjct: 278 EALDEK---HIEKIQAEGNRMEKLIHDLLDLARLEGDTYPMDKMPMPLAQLVEDVCERMN 334 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 ++++ + + D G + D RL Q+ S ++ NA+ + +G + + + +G Sbjct: 335 LIAEKDDVTVNLELD--YGIIIEGDESRLEQVISNLIENAIRYGKQGKQIDVSLEQADGK 392 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + V++ G+ +P + + RF V Q G GLGL+IV + H G +S S Sbjct: 393 AVLRVRDYGAGMPPETLTRLTERFYRVDRTRSKQLGGTGLGLTIVNEIVKKHDGQLSFES 452 Query: 777 SD-EGVTTINCRIP 789 + EG T I +IP Sbjct: 453 VEGEGATAI-VQIP 465 >gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1771 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%) Query: 538 TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 +++ V++T+ + ++ L K EA A + K F+ ++S+E+R+P+ IIG + L L+ Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T+ L+ KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123 Query: 656 QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710 + K +H+ + ++ D RL Q+ +++NA+ F+ +G + ++ Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + D+ FSV+++G + ++ +F F R+ G GLGL+I + + L Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243 Query: 769 GGHVSISS 776 GG++ + S Sbjct: 1244 GGNIGVES 1251 >gi|315446672|ref|YP_004079551.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] gi|315264975|gb|ADU01717.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] Length = 1171 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 27/261 (10%) Query: 554 ALTEKNEALR--------KADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +L EKNE L+ KA+E+ K+ F+ ++S+ELR+PL +I+ LL S Sbjct: 451 SLEEKNEELQHLSASLEAKAEELAVSSRYKSEFLANMSHELRTPLNSILILAGLLTESD- 509 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 LN+KQ ++ E I S LLNL++++LDLA V++G + ++ I + +L+ ++++ Sbjct: 510 EPLNAKQHEFAETIQQSGKDLLNLIDEVLDLAKVESGSLYVDNEPITIAELVTFLERTFR 569 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILK 711 + I V + D G +D R+ QI +++NA+ F+ GS V Sbjct: 570 PIAGDKGIEFLVSVDDSAPGQITSDYTRVKQIAKNLVANAIKFTDTGSVSVKFSGCVDTD 629 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLH 768 + +G +V + G I E +F F A RG Q G GLGL+I Sbjct: 630 GSPGDGYLSMAVVDTGIGIDEKDHHLIFESF-QQAGRGSAKQYGGTGLGLAISRELARHL 688 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG +++ S+ +T C +P Sbjct: 689 GGDIALRSALGEGSTFTCYLP 709 >gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] Length = 2384 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 14/230 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ ++S++LR+P+T +IG ++LLK +KL ++KQ YVE I + LL L+ Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DAKQDVYVESIRVCADTLLTLI 1938 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682 NDILD + ++AG MK++ I L + EV +++ + + ++S + Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNLLVMG 1998 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D RL QIF +LSN+ F+ GS + ++ V + G I E+ + Sbjct: 1999 DPVRLHQIFMNLLSNSYKFTPAGSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQLVRL 2058 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 F F S A R G GLGLSI ++ I ++ GG + + S + TT+ Sbjct: 2059 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107 >gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 869 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 14/276 (5%) Query: 527 EYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 ++ P P + ++ F +V+ R E L A + K+ F+ ++S+E+R+ Sbjct: 446 QFRAAPRPGSGRVVLFDGFYFDVSALKRIEGDLRRAMVVAETASQSKSEFLANISHEIRT 505 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G LL+T+ LG +++ YV L ++ DILD + ++AG M + Sbjct: 506 PLNGVLGMLQLLETAPLG---REEAGYVTTALKCGRGLTRVLGDILDFSLLEAGAMVIKS 562 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 + + + D+ +V +++ + I V++ + D RL QI ++ NA+ F Sbjct: 563 TPVDVRDVTADVLGALSIECRARGIDAGLVVAPDVPARVLTDGARLRQILFNLVGNAIKF 622 Query: 702 SSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 + GS + L + R +F+V + G +PE+ VF F RR G G Sbjct: 623 TQAGSVRLDIALASQRGQAAVLLFTVADTGIGMPEEKLDDVFEPFTQADGSLTRRFGGTG 682 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 LGL IV+ + L GG +++ S T I+ +P K Sbjct: 683 LGLGIVKRLLTLLGGFLAVESRVGVGTRIDFSLPCK 718 >gi|172065526|ref|YP_001816238.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171997768|gb|ACB68685.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 730 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%) Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581 P P A+ + ++ V VT+ V A L N LR A++ K+ F+ + +ELR Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +PLT I +L++ + I ++ L++D+LD++ + G + L Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 ++ L D+++ + + + + R+ V +D D RL Q+ + +L+NA + Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 478 Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758 + G + ++A +G I V +NG+ IP D S+F F + + G+G+GL Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538 Query: 759 SIVESFINLHGGHVSISSSDEG 780 ++V S +NLHGG V S+ G Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560 >gi|319900140|ref|YP_004159868.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] gi|319415171|gb|ADV42282.1| integral membrane sensor signal transduction histidine kinase [Bacteroides helcogenes P 36-108] Length = 370 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 14/242 (5%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNS------FVQHVSYELRSPLTNIIGFTDL 593 T + + S R +R K + + E+K + F+ ++S+E+R+PL + GF+D+ Sbjct: 117 FTAIYLLASRRVKRLKQRKEKVTLQIQELKRTTANKALFLSNMSHEIRTPLNALAGFSDI 176 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 L T + + + K Q+ + I +S +L+ L++D++DL+T+D MK N L Sbjct: 177 LCTMDMDADSCK--QFNDIIQLNSQLLIKLIDDVVDLSTLDLNNMKFNLEKTDAVALCRG 234 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 V +SI ++ + + I ++ + D QRL Q+ I+ NA F +GS + Sbjct: 235 VVESIQ-QIKQTDAEISFKTELEYLPLNTDSQRLQQVLINIIVNATKFCKQGSITLALEL 293 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 R+ + F+V + G IP + VF RF N H G GLGLSI E I GG++ Sbjct: 294 REEKAY-FTVTDTGCGIPLEQQSKVFGRFEKLNEHAD---GTGLGLSICEIIIKYLGGNI 349 Query: 773 SI 774 I Sbjct: 350 GI 351 >gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 545 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 6/231 (2%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNL 623 D K++F+ +S+ELR+PL +IGF+ LL+ + Q V+ I + LL + Sbjct: 302 GDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQAGRRLLAI 361 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ++DILD+A V++G + L+ + L L+ + + + + V DG L D Sbjct: 362 IDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVALDGDLPPLRGD 421 Query: 684 RQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV--F 739 +RL Q +LSNA+ FS G + A ++G SV++ G + PED+ +++ F Sbjct: 422 WRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGMRPEDIDRALAPF 481 Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + A GVGLGL + + HGG + + S+ T R+P Sbjct: 482 AQ-IDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRLPP 531 >gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 585 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 22/285 (7%) Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYE 579 L + PL NA+ L + + A L ++ EA R+ A +K+ F+ +VS+E Sbjct: 283 LRHECYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHE 342 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL +IGF L+ + K +Q++ S LLN++NDILD+A ++AG M+ Sbjct: 343 IRTPLNGMIGFLKLILEGMADDVEEK-NQFLSEAHQLSLHLLNIINDILDIAKIEAGKME 401 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSN 697 L + I L +L ++V + + N+ R+++ + QRLLQ+ I+ N Sbjct: 402 LVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGN 461 Query: 698 AMDFSSKG-----STVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 A+ F+ +G + V+LK + G + + G + D +F F V Sbjct: 462 AIKFTHEGGITVTADVVLKKGKLQEQNFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDG 521 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + Q G GLGL+I + + GG V S EG+ +T+ +P Sbjct: 522 SRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVP 566 >gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 903 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 16/229 (6%) Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 EA KA++ K+ F+ ++S+E+R+P+ IIG D++ S+L S Q Q++ + S Sbjct: 381 EAKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSEL---TSTQRQHLNKVVYS 437 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 S IL++L+NDILD + V+AG + + LN + + +I+ + E N+ ++ I D Sbjct: 438 SQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKNLNVRFICDPN 497 Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIF---SVKNNGSS 729 + + D R+ Q+ + SNA+ F+ GS V + D N + + V++ G Sbjct: 498 IPPILIGDPLRISQVLLNLSSNAVKFTRNGS-VTISVTYDIIPNSNKLLLRARVQDTGIG 556 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + ++ VF F R G GLGL+IV+ + L GG V+ S Sbjct: 557 MSKEQLDKVFESFTQADGSTSRDFGGTGLGLTIVKQLVKLMGGKVTAES 605 >gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 1239 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 16/238 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL +++ + LL +K G+L KQ +Y + I S LL ++++IL Sbjct: 542 KSEFLANMSHELRTPLNSLLILSQLLSENKEGNLKPKQVEYAQTIYMSGADLLKMIDEIL 601 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 DL+ VDAG M +N+ + L +L V+Q+ A + +++ I + + ++D RL Sbjct: 602 DLSKVDAGKMDINHEAVHLKELELFVEQNFAPVAAQRELQLHTEIEENLPDAIISDGYRL 661 Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMC 735 QI +LSNA F+++GS + +R NG+ SV++ G I D Sbjct: 662 KQILRNLLSNAFKFTTEGS-ITFNVSRANGEQLPGLLNPRRSYLALSVRDTGIGIASDKT 720 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F F R+ G GLGLSI L GG +++ S + +P + Sbjct: 721 DLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGIITVESEQGQGSCFTLYLPEQ 778 >gi|220905787|ref|YP_002481098.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219862398|gb|ACL42737.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 861 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 +K+ + +S+EL++PLT I+G +L+ LGSL +Q QYV+ I S L+ LVND+ Sbjct: 356 LKDELLADISHELKTPLTAILGLASVLQGQGLGSLTPRQFQYVQLIHRSGRQLMALVNDV 415 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIK-----VISDGKLGS 679 +DL ++ G ++LN + L L ++ Q + + E + + I G + Sbjct: 416 VDLIQLETGQVELNSEVVELRPLAQKAYQLAQQLQGQTSEPRPQRQEDFQLTIDPGLETA 475 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 VAD +L ++ +L NA+ + GS + L+ +R +V + G I +F Sbjct: 476 VVADPLQLRRMLVHLLRNALQSTPVGSKLGLRVSRWARWVALTVWDQGKGIALQHQPLIF 535 Query: 740 N--RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEG 780 R ++ Q +G GLGL + LHGG +S IS + G Sbjct: 536 QHLRRTESSSTQQLQGNGLGLMLTRKLARLHGGELSFISQAGRG 579 >gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 585 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 22/285 (7%) Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYE 579 L + PL NA+ L + + A L ++ EA R+ A +K+ F+ +VS+E Sbjct: 283 LRHECYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHE 342 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL +IGF L+ + K +Q++ S LLN++NDILD+A ++AG M+ Sbjct: 343 IRTPLNGMIGFLKLILEGMADDVEEK-NQFLSEAHQLSLHLLNIINDILDIAKIEAGKME 401 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSN 697 L + I L +L ++V + + N+ R+++ + QRLLQ+ I+ N Sbjct: 402 LVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGN 461 Query: 698 AMDFSSKG-----STVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745 A+ F+ +G + V+LK + G + + G + D +F F V Sbjct: 462 AIKFTHEGGITVSADVVLKKGKLQEQHFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDG 521 Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + Q G GLGL+I + + GG V S EG+ +T+ +P Sbjct: 522 SRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVP 566 >gi|299143989|ref|ZP_07037069.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518474|gb|EFI42213.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 472 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE- 611 + L + + K ++IKN F+ VS+ELR+PLT+I G+ +LK++K + Q +E Sbjct: 228 KTLNTMAQEIVKKEQIKNDFISSVSHELRTPLTSIKGWAVVLKSAK-----EDERQLIED 282 Query: 612 ---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 I S L +V ++LD + +G ++L + D N+V + + + N + Sbjct: 283 GLNIIENESDRLAKMVEELLDFSRFISGRIQLEKDAFNIADTCNDVAKQMKPRAELNKVD 342 Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 + IS+ K V D R+ Q+ ++ NA+ F+S+ V LK+ ++ F+ V +NG Sbjct: 343 FIIDISEDK-AIIVGDENRIRQLLINLIDNAIKFTSENGWVKLKSYVEDEKFVILVSDNG 401 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 I + V +F H G+GL +S + LHGG V I S ++ TT+ Sbjct: 402 MGISKKDLAHVKEKFYKGKHSKSHSGIGLSVS--DEIAKLHGGKVEIFSEEKIGTTVKVT 459 Query: 788 IP 789 IP Sbjct: 460 IP 461 >gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 896 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ ++Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721 D F D +R+ QI +LSNA F+ KGS + ++ + + D Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|145221593|ref|YP_001132271.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145214079|gb|ABP43483.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 1161 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 27/261 (10%) Query: 554 ALTEKNEALR--------KADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +L EKNE L+ KA+E+ K+ F+ ++S+ELR+PL +I+ LL S Sbjct: 451 SLEEKNEELQHLSASLEAKAEELAVSSRYKSEFLANMSHELRTPLNSILILAGLLTESD- 509 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 LN+KQ ++ E I S LLNL++++LDLA V++G + ++ I + +L+ ++++ Sbjct: 510 EPLNAKQHEFAETIQQSGKDLLNLIDEVLDLAKVESGSLYVDNEPITIAELVTFLERTFR 569 Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILK 711 + I V + D G +D R+ QI +++NA+ F+ GS V Sbjct: 570 PIAGDKGIEFLVSVDDSAPGQITSDYTRVKQIAKNLVANAIKFTDTGSVSVKFSGCVDTD 629 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLH 768 + +G +V + G I E +F F A RG Q G GLGL+I Sbjct: 630 GSPGDGYLSMAVVDTGIGIDEKDHHLIFESF-QQAGRGSAKQYGGTGLGLAISRELARHL 688 Query: 769 GGHVSISSSDEGVTTINCRIP 789 GG +++ S+ +T C +P Sbjct: 689 GGDIALRSALGEGSTFTCYLP 709 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ Sbjct: 694 THKDITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL +Q Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A Sbjct: 751 SLTPQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G I +D + +F+ F R+ G GLGLSI + +++ GG Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928 Query: 772 VSISS 776 + + S Sbjct: 929 MQVQS 933 >gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 375 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 2/241 (0%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L +KN L K +E+KN F+ +++LR+PL I ++ L SL+ + Q++E Sbjct: 130 RELQKKNIELTKLNELKNHFLGMAAHDLRNPLGAIRNLSEFLLEEARDSLSDEYIQFLEL 189 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I SS +L+L++ +LD+A ++AG ++L++ + L L+ V + I+I++ Sbjct: 190 IHTSSNFMLSLLDQLLDIARIEAGKLELDFQSTDLISLIKSVVDINKILAEKKKIQIRLE 249 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + D ++ Q+ +LSNA+ FS +G+ + + +V + G IPE Sbjct: 250 HFETIPYVELDSMKIEQVMHNLLSNAIKFSPEGNLIKVHVFLSGEHVTVAVTDKGPGIPE 309 Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + + ++ F + + + GLGL+IV I H G + + S + TT +P Sbjct: 310 EDIQKLYQPFTKTSVKTPEGEKSTGLGLAIVHKIILGHMGKIWVESKVDQGTTFFFSLPV 369 Query: 791 K 791 K Sbjct: 370 K 370 >gi|218704409|ref|YP_002411928.1| hybrid sensory histidine kinase TorS [Escherichia coli UMN026] gi|218431506|emb|CAR12384.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli UMN026] Length = 950 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 479 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 535 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ I + I+D + Sbjct: 536 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTAL 595 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 596 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 654 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 655 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 701 >gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 934 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 96/390 (24%), Positives = 180/390 (46%), Gaps = 46/390 (11%) Query: 414 WMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSL---WKT 469 W+ +++ +++ E N + Q ++H S+ + + DG N AF L T Sbjct: 257 WLQQHVEAKLNKELLDNEKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLT 316 Query: 470 EENRLSPGTHIRNIAAT---CSRYYNE-SDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525 E PG ++ I + R +E S G + + ++ D R Sbjct: 317 ETIGKKPGDLLQGIDTSKEEIKRISDELSQGHTVQSELLNYHKDGRPYW----------- 365 Query: 526 LEYSIIPLPNAQTML-TFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 ++ I P+ N + F+ V +D + E+ L + + ++ K++F+ +S+EL Sbjct: 366 IDIVITPIRNIHNQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHEL 425 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA---SSTILLNLVNDILDLATVDAGI 637 R+PL I+G +L++S Q+Q+ E +S S LL+L+NDILD++ ++ G Sbjct: 426 RTPLNGILGMAQILESS------VTQAQHKEQLSVLLESGNHLLSLLNDILDISKIEEGK 479 Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKI 694 ++L +++L + + + + +E I+ K+ + GK SF D+ R+ Q+ + Sbjct: 480 LELEDIDFAIDELCSPIISTYSAICNEKGIQFKLNNQLPSGK--SFRGDKSRIRQLIFNL 537 Query: 695 LSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 L NA+ F+ +GS ++ ++ V + G IP D ++F+ F Sbjct: 538 LGNAVKFTERGSVELVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEAS 597 Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776 R+ G GLGL+IV+ NL GG +SS Sbjct: 598 TTRQFGGTGLGLAIVKKLSNLMGGDAYVSS 627 >gi|116326605|ref|YP_796526.1| Signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] gi|3687664|gb|AAC62214.1| LcoS [Lactococcus lactis] gi|76574959|gb|ABA47428.1| histidine kinase sensor protein [Lactococcus lactis] gi|116108973|gb|ABJ74095.1| Signal transduction histidine kinase [Lactococcus lactis subsp. cremoris SK11] Length = 464 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK + +++ +N F+ V++ELR+PLT I G+ D+ S SL K +QY+ I Sbjct: 232 LAEKLDFMKRE---RNEFLSSVAHELRTPLTFIKGYADIANRST-TSLEDK-TQYLRIIR 286 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L L+ D+++LA ++ K+ +++ +L+NEV ++ E RI + Sbjct: 287 EESRHLTQLMEDLMNLAQLEENGFKVEKHQVLIQELINEVVSKVSGVFSEK--RINFLIS 344 Query: 675 GKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 G+ G+F A D R+ Q+ +L NA +S+ S + L + +F + + G IPE Sbjct: 345 GE-GNFYANIDFMRIEQVLVNLLMNAYKYSADESDIKLAFIPEKENFKIVISDKGEGIPE 403 Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F RF V + GVGLGL+IV+ + H G + + S TT +P Sbjct: 404 QDLPYIFERFYRVDKSRTRTTGGVGLGLAIVQDIVKKHNGKIIVESIQNQGTTFIIELP 462 >gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8] gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8] Length = 1111 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 13/260 (5%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 V D + E L E + + +K++F+ ++S+E+R+PLT+IIGF +++ L Sbjct: 848 VLDRIEYEGELVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGFAEVIGDEATSLLEH 907 Query: 605 KQS---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 S Q+ + I S LL ++ +L+L+ ++AG M+L+ S + L D + E Sbjct: 908 SDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLDLADEVAEAT 967 Query: 656 QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + I ++ ++G L + V D L ++SNA+ ++ +G TV ++A R Sbjct: 968 DLFEPQALTEGIDLQGETAEGPLWARV-DEGGLRIALQNLISNALKYTEEGGTVRVRAGR 1026 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772 D V++ G + D +F F + R G GLGL++ + I GG + Sbjct: 1027 RGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTI 1086 Query: 773 SISSSDEGVTTINCRIPSKE 792 ++ ++ + R+P+ + Sbjct: 1087 AVETAKGDGSCFTVRVPAAD 1106 >gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] Length = 896 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N+ + S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTIKDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARD----NGDFI-F 721 D F D +R+ QI +LSNA F+ KGS I + D + D+I Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIEISNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 AGSTFTVYIPN 732 >gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 3557 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 9/230 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E +A++ K++F+ ++S+ELR+PL I+G+ +L+ S L+S ++ I Sbjct: 3089 LQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSP--QLSSDHKSNIQVIY 3146 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + LL L+ DILD++ ++AG M+L LN L V + K + ++ Sbjct: 3147 QCGSHLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERP 3206 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR--DNGDFIFSVKNNGS 728 L + + D++RL Q+ +L NA+ F+S GS V ++R NG F +++ G Sbjct: 3207 SSLPTVINTDQKRLRQVLLNLLGNAIKFTSLGSIKFRVSFTSSRTNHNGFLQFEIEDTGV 3266 Query: 729 SIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777 I + +F F Q+ G GLGL+I + + + G +++ S+ Sbjct: 3267 GISAEQLDRIFLPFEQVGSLSQKAEGTGLGLAISQKLLQMMGTQLTVEST 3316 >gi|153002909|ref|YP_001377234.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026482|gb|ABS24250.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV-D 634 V ++LR+PL+ I LL SL +++ + I ASS + ++ D+LD V D Sbjct: 226 VGHDLRTPLSAIEAGATLLSRR---SLAPAEARTLARILASSRRMARMIGDLLDFTRVRD 282 Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693 AG + L L ++ V + + + + + + + DG L G++ D RL Q Sbjct: 283 AGGIPLAPRATDLREVCRPVVEEVRLRHGADAVALSL--DGHLDGNW--DPDRLQQAIGN 338 Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR 752 ++SNA+ G+ V L+A D+ V+N+G IP + +++F F +A + Sbjct: 339 LVSNALQHQPTGAPVRLRAIGDHDAVCVEVENDGPPIPAEAARAIFEPFRRGDARQAGAD 398 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G+GLGL IV + + HGG+V ++S + TT R+P Sbjct: 399 GLGLGLFIVRTIVEAHGGNVEVASGPDRPTTFTVRLP 435 >gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6] gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6] Length = 805 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K +F+ +S+E+R+P+ ++G LLKT LN +Q ++++ + S ++ L+N+I Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 408 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LD + ++ G M+ + + + ++ V T E ++ KV + G + AD+ R Sbjct: 409 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYTTVPTGRWYCADKAR 468 Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743 L Q+ +L+NA+ F+++G + + R+ +++ VK+ G IPE K +F F Sbjct: 469 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGIGIPESAQKRIFRPFE 528 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 RR G GLGL+IV+ GG V++SS Sbjct: 529 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 563 >gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 735 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 536 AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 A +L F+ V + + AL + E +A K+ F+ ++S+E+R+P+ I+G Sbjct: 454 AGNLLYFIGVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMI 513 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L ++L S + +QY++ S+ LL +VND+LDLA ++AG ++L L + Sbjct: 514 HL---ARLKSPDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREI 570 Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710 + + E + + + ++ + D RL Q+ + ++ NA+ F+ G I Sbjct: 571 RAAIEPMQAAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTGHVDIR 630 Query: 711 KAARDN--GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLS 759 D+ GD F+V++ G IP D +F F AH G GLGL Sbjct: 631 VELDDDAAGDEAVVRRLRFTVRDTGIGIPADRLDDIFESF-EQAHTSAHVLYGGAGLGLP 689 Query: 760 IVESFINLHGGHVSISSSD-EGVT 782 I + GG + ++S + EG T Sbjct: 690 ISRRLVEFMGGTIDVASREGEGST 713 >gi|269839128|ref|YP_003323820.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790858|gb|ACZ42998.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 539 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 552 ERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 ERA + EA+++ADE+K S + VS++LR+PL I D L + ++ Sbjct: 289 ERAALRRRAMEMEAIKRADELKTSLINAVSHDLRTPLATISAAADSLLRQDVEWSEEERR 348 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 +V I+ S L LV+++LD++ ++ G ++ + S L L+ E + + + + Sbjct: 349 GFVRDIAEESRRLGRLVDNLLDMSRLEGGSLRPHKSWCDLGALVEETIDRLGSLTAHHQL 408 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 ++V D L + D + Q+ S +L NA+ ++ +G+T+ ++ R + ++ + G Sbjct: 409 HLEVEED--LPPVLLDYVEIGQVVSNLLENAIKYAPQGTTIDIQVRRQGDEVRVAIADRG 466 Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772 IP +F++F +G+GLGLS+ + I HGG + Sbjct: 467 PGIPPQDLSRIFDKFYRVQGSSPAPQGMGLGLSVAKGLIEAHGGRI 512 >gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1240 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 12/230 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613 L E ++ A + K++F+ H+S+E+R+P+ IIG + L LKTS L+ +Q ++E + Sbjct: 471 LVESHKRAEIASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTS----LDKRQRDFMEKV 526 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 +SS +LLN +ND+LD + ++A + L+ L D+L V A K + + + Sbjct: 527 LSSSDVLLNTINDVLDYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQSKGVELLLDV 586 Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGS 728 D K+ ++ D RL QI + SNA+ F+ KG VI +K G FS+ + G Sbjct: 587 DEKVPFHWIGDPTRLGQILINLASNAVKFTEKGEVVIRVKLLEQQGQLSTLRFSIIDTGI 646 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +F+ F R+ G GLGL+I L G + + S Sbjct: 647 GIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDS 696 >gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain [Ralstonia eutropha H16] Length = 569 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 3/232 (1%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 AL + + A+ K+ F+ +S+ELR+PL I+GF L+ + S+Q+ ++ I Sbjct: 177 ALKQAQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMASEAPPPTASQQAS-IDQI 235 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 + LL L+N++LDLA ++AG L+ + + D L+E + + + + ++R++ + Sbjct: 236 LKAGWHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRFPA 295 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 ADR RL QI +LSNA+ ++ +V ++ SV++ G + + Sbjct: 296 VEPPCFVRADRTRLKQILLNLLSNAIKYNRDQGSVDVQVTTTGHRVGVSVRDTGVGLTPE 355 Query: 734 MCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 +F F H G G G+GL + + L GG +S S+ GV ++ Sbjct: 356 RLAQLFQPFNRLGHEAGPVEGTGIGLVVAKRLAELMGGTISAKST-PGVGSV 406 >gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1771 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%) Query: 538 TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 +++ V++T+ + ++ L K EA A + K F+ ++S+E+R+P+ IIG + L L+ Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T+ L+ KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123 Query: 656 QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710 + K +H+ + ++ D RL Q+ +++NA+ F+ +G + ++ Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + D+ FSV+++G + ++ +F F R+ G GLGL+I + + L Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243 Query: 769 GGHVSISS 776 GG++ + S Sbjct: 1244 GGNIGVES 1251 >gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 758 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E+ L E E +A E+K SF+ ++S+E+R+PL I+GF+D+L S Sbjct: 514 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFSDE 572 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V+ I+ ++ +LL LV D+L+L+ +++G + + + LL++V Q+ + + Sbjct: 573 ERQ-EFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 631 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721 +K + V D RL Q+ + L+NA F+ +GS + L +G + Sbjct: 632 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKFTKEGS-IQLGYCCPSGMSEVHL 689 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V++ G IP K +F RF + Q GVGLGLSI + GG + + S + Sbjct: 690 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELQSEEGRG 747 Query: 782 TTINCRIPSKE 792 + +P E Sbjct: 748 SRFTVVLPCIE 758 >gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1048 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 26/270 (9%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ R ++A+ K + L A + K+ F+ ++S+ELR+PL +I+ +L+ +K +L + Sbjct: 598 TEMERTKKAIENKAQELELASKYKSEFLANMSHELRTPLNSILILAQMLEENKAANLTEQ 657 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q +Y + I + + LL L+N+ILDL+ V+AG + ++ IVL D++ VKQ Sbjct: 658 QVEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHLENIVLADMVMMVKQKFNHVAETK 717 Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----------------- 707 + V I + + D RL QI + +LSNA F+++G Sbjct: 718 GVLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKFTNEGEVKLTIQRPTERIPLLLTG 777 Query: 708 -VILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759 + K + + SV + G IP+D +F F R G GLGLS Sbjct: 778 ISLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLMIFEAFQQADGTTSRSYGGTGLGLS 837 Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789 I L G + + S + +T +P Sbjct: 838 ISRQLARLLCGDIQLQSEEGKGSTFTFYVP 867 >gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1205 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + +K + L + + K+ F+ ++S+ELR+PL +++ + L +K +L+ Q + Sbjct: 531 AKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQVESA 590 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL L+ND+LDL+ +++G M +N +VL E+ + + E + + Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +I D L + D RL QI ++SNA+ F+ +G + ++ +FSV ++G Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKILFSVIDSGIG 710 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE+ ++F F R+ G GLGLSI L GG + + S +T + Sbjct: 711 IPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSLS 770 Query: 788 IP 789 +P Sbjct: 771 LP 772 >gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 528 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 32/271 (11%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L E + +A K+ F+ ++S+ELR+PL +IIGF LL+ + SL K+ Q + + Sbjct: 253 RQLLEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQLMRH 312 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 IS S LL L+ND+LD++ V+AG + L L + + + + + + + Sbjct: 313 ISTSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLS 372 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAARDNGDFI- 720 D + AD R QI +LSNA+ F+ G + + KA ++ D + Sbjct: 373 MDHDMPIIKADPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPLH 432 Query: 721 -------------FSVKNNGSSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESF 764 +V + G I ED+ K +F + + Q +G GLGL++ + Sbjct: 433 PIPCTQYPGECVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTK-QFQGTGLGLALTKQL 491 Query: 765 INLHGGHVSISSSDEG---VTTINCRIPSKE 792 + LHGG + +S G T+ +PS E Sbjct: 492 VELHGGTIGAASEGPGRGSTFTVRLPLPSPE 522 >gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 554 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 120/223 (53%), Gaps = 11/223 (4%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R ++E K+ F+ ++S+++R+P+ I+G T + + S G + K + ++ I+ASS LL Sbjct: 171 RSSNEAKSQFLANMSHDIRTPINAIVGMTKIARES--GEASEKIAGCLDAITASSRHLLE 228 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681 L+ND+LD++ +++G M+L ++D++ V+ I + + +++ S K +F Sbjct: 229 LINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRIDRSKMKHKAFS 288 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMC 735 D R+ QI + SNA+ ++ +G ++ L K F++ +NG + + Sbjct: 289 GDELRISQILLNLASNAVKYTQEGGSIALVVQELAKTRPSYASVAFTITDNGMGMSPEFV 348 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F+ F + R G GLG+SI ++ I+ GG V + S Sbjct: 349 ERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDS 391 >gi|254458067|ref|ZP_05071494.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085460|gb|EDZ62745.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1168 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 156/297 (52%), Gaps = 20/297 (6%) Query: 499 LFAA-----IITSFDDERKSLQGTLELLSDSVLEYSI-------IPLPNAQTMLTFVNVT 546 LFAA I +D +++ + L++ S+ + E ++ A++M + Sbjct: 712 LFAATQNMQIKVLLEDSKRAYE-ELQVQSEELQESNVQMEEQQQQLTLQAKSMK--IKND 768 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 + ++A+ L ++ + L KA + K+ F+ ++S+ELR+PL +II + LL +K +L+ Sbjct: 769 ELLQAKEDLDKRADDLEKASKYKSEFLANMSHELRTPLNSIILLSKLLTQNKKETLSDSD 828 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 I + LL L+NDILDL+ +++G M+LN S +++ E++ + E N Sbjct: 829 VSKTSVIHKAGNDLLLLINDILDLSKIESGNMELNESEFDTSEIREEIEGLFSEVAKEKN 888 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + +V D SF+ D+ +LLQI +LSNA F+ G V L + N D +F V + Sbjct: 889 LNFEV-RDSFNRSFIVDKTKLLQIIKNLLSNAFKFTKSGE-VSLSVFKKNRDIVFEVSDT 946 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 G IPE +F F V + + G GLGLSI ++FINL GG + + S EG+ Sbjct: 947 GIGIPEAKLALIFEAFKQVDGSISREYGGTGLGLSISKTFINLMGGRIEVDSK-EGI 1002 >gi|167569847|ref|ZP_02362721.1| sensor histidine kinase/response regulator [Burkholderia oklahomensis C6786] Length = 1082 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL++++G +L+ G L +Q V+ + S+ L+ +VND+LD + +D Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694 G + L + DLL+ + S A + ++ ++ D L + D R+ QI + + Sbjct: 558 GELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYIVFDRSLPARLYFDPIRVSQIVNNL 617 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751 LSNA+ F+ G ++L+A G SV ++G IP+D+ +F F SN R Q Sbjct: 618 LSNALKFTPSGK-IVLRAGWHAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RG GLGLSI L G + + S+ T I +P Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVALP 713 >gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 915 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 135/277 (48%), Gaps = 16/277 (5%) Query: 525 VLEYSIIPLPNAQTMLTF-VNVTDSVRAERALT----EKNEALRKADEIKNSFVQHVSYE 579 + + SI+P+ A ++ + V ++ AER +T EA + + + +F+ +S+E Sbjct: 369 IFDTSIMPIERASGQISGGLIVGRNITAERQITADLLRAKEAAERTERAQAAFLSAISHE 428 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 +R+PL +I +LL T +L Q +E I LL LVN++LDL+ ++AG ++ Sbjct: 429 MRTPLNAVIASAELLLTD---TLTPSQRSLIETIRIGGEALLALVNNVLDLSKIEAGRVE 485 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698 + + +++ V + + + I+ + D L + V+D RL Q+ ++SNA Sbjct: 486 IAAEPTDVRAIVHAVLNLFKREADQKGLLIEAVIDPHLPALIVSDPARLRQMLMNLVSNA 545 Query: 699 MDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752 + F+ +G +I + A D+ +V++ G+ I +F F V N Q Sbjct: 546 IRFTDRGGVLITASVIGMATDHPQVEIAVRDTGTGISAQQRSHLFQPFNHVDNDQTRQ-S 604 Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G GLGL+I +L GG ++++ +T +P Sbjct: 605 GAGLGLAISAQLAHLMGGELTVAGQPGQGSTFTVTLP 641 >gi|47565594|ref|ZP_00236635.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47557584|gb|EAL15911.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 366 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 129/245 (52%), Gaps = 11/245 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R ++L E E +K E+KN + ++S++LR+P+T++IG+ DLL +KL S + QY Sbjct: 120 RMAKSLKESIENEKKTQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 178 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + S L N V+D+L+ ++ ++L+ + + L+ ++ ++ + N+ Sbjct: 179 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 238 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 + SD L V D ++++F ++ N++ + G + ++ + + +KN G Sbjct: 239 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 297 Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784 IP++ VF +F ++H G G G+GL+I +S LH G +++ S+D+ T Sbjct: 298 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 353 Query: 785 NCRIP 789 ++P Sbjct: 354 TVKLP 358 >gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1038 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 14/276 (5%) Query: 525 VLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581 +L +I+P + ++ ++++ R E+ L E ++A+E K F+ ++++E R Sbjct: 618 ILNLTIVPGCEDSWERVLVAVEDISELKRIEKELRSSREEAQEANEAKGRFLANMTHEFR 677 Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641 +P+ + G LL+ S+L S+Q + + I +S LL +VNDILD + +D+ M+LN Sbjct: 678 TPMNAVKGMVQLLQRSEL---TSEQQENLRLIKSSVDSLLVIVNDILDYSKLDSVHMELN 734 Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701 I L E+ + +++ + ++ D RL Q+ +L N + F Sbjct: 735 EENIDFPAFLREMGDVVDIGAMNKPLQVILEAENVPDCVRVDSLRLRQVLVNLLGNGVKF 794 Query: 702 SSKGS-TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753 + KG+ T+ + G+ +F V + G +P+D +S+F FV R+ G Sbjct: 795 TDKGNVTLRCRPEGPEGEGGKLRLLFEVSDTGIGLPKDGAESLFESFVQADPSITRKYGG 854 Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGL+I + GG +S ++++G + +P Sbjct: 855 TGLGLAICYKLVKHLGGELSARNNEQGGALFSFVLP 890 >gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Rhodopseudomonas palustris CGA009] gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 873 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 19/247 (7%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ RAE+A E + K+SF+ +S+E+R+P+ ++G + L +KL + Sbjct: 355 DVTERWRAEQAEAE--------NRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL---D 403 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q Q V I S LL ++NDILDL+ ++AG ++ + L+ V+ I ++ Sbjct: 404 PEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPTTLVESVRAIIEPEVR 463 Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720 I +KV D +L S D R+ Q+ + +NA+ F+ +GS ++L + N Sbjct: 464 GKGIELKVDIDPRLPPSLNGDAARIRQVLLNLAANAVKFTEQGSIAIVLTCVKRNDSHAT 523 Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + V + G I D S+F F RR G GLGL+I + GG ++++S Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583 Query: 777 SD-EGVT 782 + EG T Sbjct: 584 REGEGST 590 >gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1202 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ ++IG LL + +L+ +Q YV+ I +S LL+++NDILD + Sbjct: 826 FLAYMSHEIRTPMNSVIGLAGLLLET---NLSPEQRDYVQTIHSSGDALLSIINDILDFS 882 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690 ++ G MKL L ++ +A K E + + D + + V D RL QI Sbjct: 883 KINEGKMKLELEPFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQI 942 Query: 691 FSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749 +L NA+ F+ +G + +K + G FSV + G I + K +F+ F Sbjct: 943 LVNLLGNAVKFTERGMVSLEVKMGDEPGMLHFSVTDTGIGISKSDMKKLFHSFSQVDAST 1002 Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 R+ G GLGL+I + GG + + S +T + +I +E Sbjct: 1003 SRKYGGTGLGLAISRMLVEQMGGRIWVESEMGSGSTFHFQIKVEE 1047 >gi|325921205|ref|ZP_08183069.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548312|gb|EGD19302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 894 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 22/231 (9%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 ++ + +A K++F+ ++ +E+R+P+T ++G ++LL + L N+KQ +V+ I + Sbjct: 505 QRQQLAEQASVAKSNFLANLGHEVRTPMTGVLGMSELLLATPL---NAKQRSHVDAIRKA 561 Query: 617 STILLNLVNDILDLATVDAGIMKLNYS-------TIVLNDLLNEVKQSIATKMH-ENNIR 668 LL LVND LDLA ++AG ++L T L D ++ + ++ + H N + Sbjct: 562 GAHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPISEARGLRFHYRNQLP 621 Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 +++ + D R+ QI +L NA+ FS +G V L A++ F V+++G Sbjct: 622 AQLV-------VLGDATRVRQILINLLGNAIKFSERGE-VSLTASQHGEVLRFKVRDSGP 673 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776 I + K +F RF AH R G GLGL+I + G + + S Sbjct: 674 GIGPEQQKRLFQRFEQADGAHTSARYGGSGLGLAICQELTVAMKGTIRVRS 724 >gi|283852157|ref|ZP_06369430.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572383|gb|EFC20370.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 598 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 121/238 (50%), Gaps = 17/238 (7%) Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLL--------------KTSKLGSLNSKQSQYVEYI 613 +K++F+ VS+EL++PLT+++GF ++ K + + + ++ + + + Sbjct: 357 VKSNFLSLVSHELKTPLTSMVGFAQVMIRRLERGVLADYVAKNADVAAECARFHENLAIM 416 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 L L+ ++L+LA +++G L + ++DL++ + M + + Sbjct: 417 LEEGRRLAKLIENVLELAALESGAAALTMGPVAVSDLVDRAVEPFLEPMAQKGLLFLRDI 476 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + L DR+R++ + + SNA+ F+ G ++ +A ++G + SV++ G IP + Sbjct: 477 ESDLPPLRCDRERIVYVLRHLFSNAVKFTEAGQ-IVCRARSEDGMAVISVEDTGRGIPRE 535 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 M ++VF +F + + G+ G+G+GL+ + + HGG + I+ + ++ +P Sbjct: 536 MREAVFEKFLQLGDNLTGKMPGLGIGLAASRAVVEFHGGRIRIAGEPGRGSEVSFTVP 593 >gi|297569292|ref|YP_003690636.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925207|gb|ADH86017.1| integral membrane sensor signal transduction histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 550 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 150/324 (46%), Gaps = 23/324 (7%) Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537 T ++ +A +RY D A++ DE ++L + ++ + +Y N + Sbjct: 240 TPMQTLATAMTRYSRSGHADD---AVVLQTGDELEALSHSFASMAGKLSDYH----HNLE 292 Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + + D ++ R L E N L + K+ F+ S+ELR+PLT++ G + L T+ Sbjct: 293 DKIQ-IATRDLEQSNRQLLEANRLLAATNLRKSDFIARASHELRTPLTSVKGGMEYL-TA 350 Query: 598 KLGSLNSKQSQ---------YVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVL 647 KL SL+ Q +++ I ++ L+ +VN +LD+ ++ G + LN L Sbjct: 351 KLASLDRDTGQACNRDELLDFLKLIRNNTDRLIRMVNTMLDIEHIEMGTVSSLNIRDFDL 410 Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707 ++ E ++ +A +I + I + AD R+ Q+ + +L+NA+ FS S Sbjct: 411 ALIIWESREELALTAAGKDIEL-TIQGPQTMMVRADEDRIRQVLTNLLANAVKFSPTNSA 469 Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 V L +D + V + G+ I + +F +F G + G GLGL+I S I Sbjct: 470 VQLCFRQDQEVTLVEVLDRGAGIEPGQEEKIFEKFY---RLGDKEGSGLGLAICRSIIEA 526 Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791 HGGH+ + G ++PS+ Sbjct: 527 HGGHIGAENRPGGGARFYFQLPSR 550 >gi|229116058|ref|ZP_04245451.1| Sensor histidine kinase [Bacillus cereus Rock1-3] gi|228667393|gb|EEL22842.1| Sensor histidine kinase [Bacillus cereus Rock1-3] Length = 312 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 3/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I Sbjct: 74 LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 T L L+ND+ + V + L + I + +LL ++ ++ E NI+ + Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +AD +L+++F ++ NA+ + ++G + L A N + N G IP Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V + G GLGL+I +S + LH G + + S D+ T +P K Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311 >gi|167562661|ref|ZP_02355577.1| sensor histidine kinase/response regulator [Burkholderia oklahomensis EO147] Length = 1082 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%) Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 +S+E+R+PL++++G +L+ G L +Q V+ + S+ L+ +VND+LD + +D Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557 Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694 G + L + DLL+ + S A + ++ ++ D L + D R+ QI + + Sbjct: 558 GELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYIVFDRSLPARLYFDPIRVSQIVNNL 617 Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751 LSNA+ F+ G ++L+A G SV ++G IP+D+ +F F SN R Q Sbjct: 618 LSNALKFTPSGK-IVLRAGWHAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675 Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RG GLGLSI L G + + S+ T I +P Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVALP 713 >gi|162453383|ref|YP_001615750.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161163965|emb|CAN95270.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1676 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 +A +AL EK L + K+ F+ ++S+ELR+PL +++ +D L + +L ++Q +Y Sbjct: 974 QARQALEEKARQLALTSKYKSEFMANMSHELRTPLNSLLILSDQLSRNNDQNLTARQVEY 1033 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 + I AS T LL L+NDILDL +++G + ++ I DL + V+++ + Sbjct: 1034 AKTIHASGTDLLGLINDILDLTKIESGTVVVDVGEISFTDLSDYVRRTFRHVAEAKKLDF 1093 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----------DNG 717 ++ L S D +RL Q+ +LSNA F+ +G V+ + AR Sbjct: 1094 ELSFSSTLPTSMFTDAKRLQQVIKNLLSNAFKFTERGKVVLEVTVARGGWSRENEVLSRA 1153 Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 D + SV + G I D + VF F R+ G GLGL+I + GG ++ Sbjct: 1154 DVVIALSVHDTGIGIAPDKQQIVFEAFQQADGSTSRKYGGTGLGLAISREIAGMLGGDLT 1213 Query: 774 ISSSDEGVTTINCRIP 789 + S+ +T +P Sbjct: 1214 LISAPGRGSTFTLYLP 1229 >gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 578 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 26/223 (11%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ ++G +LL S+L + KQ YV+ + S LL ++NDIL Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSEL---DEKQKSYVKILHQSGESLLGIINDIL 253 Query: 629 DLATVDAGIMKLNYSTIVLN-------DLLNEV--KQSIATKMHENNIRIKVISDGKLGS 679 +++ ++AG +++ L+ +L EV ++ +A ++ I + Sbjct: 254 NISKIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQ--------IEEDVPRC 305 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMC 735 V D RL Q+ +++N + F+ KGS V L NG ++ F VK+ G IP D Sbjct: 306 VVGDPSRLRQVLINVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCI 365 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F R+ G GLGL+I + + L GG + + S Sbjct: 366 GDIFGLFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGAIGVES 408 >gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630] gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile QCD-66c26] gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile QCD-63q42] gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile QCD-37x79] gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile R20291] gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile] gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196] gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile R20291] Length = 429 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +S G+ +G I L N + + K+E N+L G +I + E + Sbjct: 95 ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILQ 147 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558 I S D+E ++ D V + + P L N ++ + VN+ D +T+K Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 K + +++ FV +VS+EL++PLT+I GF + LK+++ +N++ ++++E I + S Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251 Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L L++DIL L+ V D +M+ +V+ D+ EV + E NI + D Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K S ++++ + Q+F ++ NA+ ++ V + +D + V +NG IP++ Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F RF V A G GLGL+I + + G + + S Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410 >gi|332143228|ref|YP_004428966.1| Signal transduction histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553250|gb|AEA99968.1| Signal transduction histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 641 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 15/225 (6%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A+ K F+ +S+E+R+PL I G LL + L KQ QY + +S++IL Sbjct: 253 QQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDT---PLTEKQHQYASDLKSSASILAT 309 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681 ++ND+LDL+ +++G+ +++ + L+++L ++ + T NN R+ V + + S Sbjct: 310 VINDVLDLSKIESGMSEIDVTEFALDNMLRDLITLLGTNASANNTRL-VYTSKNMDSVAV 368 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFSVKNNGSSIPED 733 +D +L QI ++SNA+ F+ KG+ I + + +VK+ G I D Sbjct: 369 TSDITKLRQIIINLVSNAIKFTHKGTVSISAKLKKPSTEEVCENRLVVAVKDTGIGIEPD 428 Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + +F++F + R G GLGL+I L GG + + S Sbjct: 429 RLEHIFDKFTQSDSSITREYGGTGLGLAIARQLAQLLGGDIKVVS 473 >gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 784 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 130/256 (50%), Gaps = 16/256 (6%) Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIG 589 +T ++F + ++ R +TE+ EA + K D++K F ++++ELR+PL I G Sbjct: 483 VETKVSFNDQESTMMIIRDITEQKEAKKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFG 542 Query: 590 FTDLLKTS-KLGSLNSKQS-----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 LL+ K + K++ + ++ + + LL LVN+I+D+ +++G +L Sbjct: 543 ALQLLELDFKQDEIEKKEALLGVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQ 602 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 + + +++ + S++ M I ++ + + D ++ +I +L+NA+ F+ Sbjct: 603 NVDIVNVVENITMSVSEYMEIRGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTE 662 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760 G + + + + S+++ G IPED +F RF S R R G G+GLS+ Sbjct: 663 SGGQIKVNMYEKEENMMISIQDTGIGIPEDRINVIFERF-SQVDRSLTRSHEGSGIGLSL 721 Query: 761 VESFINLHGGHVSISS 776 V+S + L GG +++ S Sbjct: 722 VKSLVELQGGQITVKS 737 >gi|298246997|ref|ZP_06970802.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549656|gb|EFH83522.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 390 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 21/272 (7%) Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK--------NEALRKADEIKNSFVQHVSYELRSPL 584 LP A L +T ++ L +K N+ L +A+++K+ F+ ++ELR+PL Sbjct: 115 LPFALAGLLIAVITGQHQSAHRLVQKRADELSIMNQELERANQLKDYFMIRAAHELRTPL 174 Query: 585 TNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 T I+G T L + K GS + + E + A + L V D+L+L+ + +G + L Sbjct: 175 TTILGETQLALRRLHKAGSTTTDCQRSFEKVEARAMYLRAFVEDLLELSRLRSGEIPLRP 234 Query: 643 STIVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 ++ L EV +Q+++ + E S+ L AD +RL Q ++ NA+ Sbjct: 235 TSCDFEKLCREVVEDQQALSGRQIEYQ-----FSEQPL-ILQADCERLSQAIINLVENAV 288 Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757 +S + + + ++ + D +F V N G + + + +F F S A R G G+G Sbjct: 289 HYSLEHTVIRVRVSADQTSVLFQVHNEGPELSHEQQERIFEPFYRTSFAENAFRTGRGIG 348 Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 L++ + + H GH+ + S + TT RIP Sbjct: 349 LTMSQEIVEKHHGHIWVESVEGKGTTFFVRIP 380 >gi|293404288|ref|ZP_06648282.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300896367|ref|ZP_07114909.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331662402|ref|ZP_08363325.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] gi|291428874|gb|EFF01899.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300359778|gb|EFJ75648.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331060824|gb|EGI32788.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] Length = 900 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ I + I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 664 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 128/244 (52%), Gaps = 24/244 (9%) Query: 555 LTEKNEALRKA-DEIKNS-------------FVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 L KN++L A DE++N+ F+ +S+E+R+P+ ++G ++L ++L Sbjct: 255 LEHKNDSLNTALDELRNATLVAERANLAKSRFLSSMSHEIRTPMNAVLGMAEILGETEL- 313 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 Q++YV+ I A+ LL +++DI+DL+ ++ G ++L+ + L++ +++ I Sbjct: 314 --TPDQTRYVQIIRAAGESLLAILSDIIDLSRIETGSLRLDETRFTLSETVDKAFAIIEP 371 Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN 716 + + ++ + ++ D + L Q+ +L NA+ F+ G+ +V RD Sbjct: 372 RAGQKSLELVCTLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFTEGGTVRLSVSRAPGRDG 431 Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 G + FSV + G IP D ++F+ F +N+ + G GLGL+I + +++ GG + Sbjct: 432 GVAVQFSVSDTGPGIPADRLGAIFDSFTQANNSTTREHGGAGLGLTISKRIVHMMGGRIW 491 Query: 774 ISSS 777 SS Sbjct: 492 AESS 495 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 14/232 (6%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ +S+E+R+P+ IIG +LL ++L S+Q Y + + S+ +LL ++NDIL Sbjct: 547 KSSFLAMMSHEIRTPMNGIIGMNELLLGTRL---TSEQLDYAQAVQESAELLLTVINDIL 603 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687 D + V+AG M+L +++ V + + K E + I I+D F D RL Sbjct: 604 DYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLFQGDPGRL 663 Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743 Q+ ++SNA+ F+ +G+ I + D G + F V + G I ++ +F F Sbjct: 664 RQVLLNLVSNAVKFTERGTIDIRVFPVSDTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFS 723 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT---TINCRIP 789 R+ G GLGL+I + + L GG + + S EG T T+ R P Sbjct: 724 QGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLPVRKP 775 >gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 764 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 11/244 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T +V+ E L E A+ K++F+ ++S+E+R+P+ ++G +LL + +L Sbjct: 190 LDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---NL 246 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q Y I S LL ++ND+LD + ++A ++L+ L ++EV + Sbjct: 247 SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTA 306 Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + + + + D L SFV D R+ Q+ + ++ NA+ F+S+G + N D Sbjct: 307 RDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQITGISNADDKI 366 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++++ G IPE+ + +F F V + Q G GLGL+I + I L GG + + Sbjct: 367 CSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWV 426 Query: 775 SSSD 778 S + Sbjct: 427 ESQE 430 >gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492] gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492] Length = 759 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 N+ + E+ L E E +A E+K SF+ ++S+E+R+PL I+GF+D+L S Sbjct: 515 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFSDE 573 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +Q ++V+ I+ ++ +LL LV D+L+L+ +++G + + + LL++V Q+ + + Sbjct: 574 ERQ-EFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 632 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721 +K + V D RL Q+ + L+NA F+ +GS + L +G + Sbjct: 633 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKFTKEGS-IQLGYCCPSGMSEVHL 690 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 V++ G IP K +F RF + Q GVGLGLSI + GG + + S + Sbjct: 691 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELRSEEGRG 748 Query: 782 TTINCRIPSKE 792 + +P E Sbjct: 749 SRFTVVLPCIE 759 >gi|159040033|ref|YP_001539286.1| GAF sensor hybrid histidine kinase [Salinispora arenicola CNS-205] gi|157918868|gb|ABW00296.1| GAF sensor hybrid histidine kinase [Salinispora arenicola CNS-205] Length = 1179 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 126/255 (49%), Gaps = 16/255 (6%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A L E + L +A K+ F+ ++S+ELR+PL +++ LL + +L+ KQ ++ Sbjct: 750 ARLGLEETAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLVENPEQNLSPKQIEFA 809 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I ++ T LL+L++DILDL+ ++AG M + + I ++ + V+Q+ + E + + Sbjct: 810 RTIHSAGTDLLSLIDDILDLSKIEAGRMDVEPTGIRFTEIRSYVEQAFVPQAQEKGLDFE 869 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNGD 718 V +S V D QRL QI ++SNA+ F+ G STV A N Sbjct: 870 VRVSPDLPEKIVTDAQRLQQILRNLISNAVKFTDAGVVRLAIAPAPESTVFDVPALTNAR 929 Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 + F+V + G I +D +F F RR G GLGLSI L GG + + Sbjct: 930 QVIAFTVADTGIGISDDKLSIIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGAIGV 989 Query: 775 SSSDEGVTTINCRIP 789 SS+ +T +P Sbjct: 990 SSAPGQGSTFTLFVP 1004 >gi|329956927|ref|ZP_08297495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328523684|gb|EGF50776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 868 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L A K F +VS++ R+PLT I D L + S++ + Q +E + + ILL Sbjct: 356 LEAATHAKLVFFTNVSHDFRTPLTLIADPVDQLLADR--SISEQSHQLLELMKKNVHILL 413 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKV-ISDGKL 677 LVN ILD V+ G M+L+ DLLN + S + + +I + G Sbjct: 414 RLVNQILDFRKVENGRMELHLEPF---DLLNSFEGWNDSFRVALLKKHIAFSFEPAPGVD 470 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +AD +++ +I+ +LSNA+ ++ + ++++ ++ F SV N+GS I ++ Sbjct: 471 YRMLADAEKMERIYFNLLSNAVKYTQENGKIVVRLEAEDRHFRLSVFNSGSYISTTDVEA 530 Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 +F RF G + G G+GL++V +F+ +HGG++ S+++G TT +P ++ Sbjct: 531 IFERFYQVG--GHQAGTGIGLALVRAFVEMHGGNIMAHSNEKG-TTFTVTLPKRD 582 >gi|313902446|ref|ZP_07835848.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] gi|313467244|gb|EFR62756.1| integral membrane sensor signal transduction histidine kinase [Thermaerobacter subterraneus DSM 13965] Length = 521 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR++ ++ + + +S+ELR+P+T I G + L+ + + + + Q + I A + L Sbjct: 245 LRRSQALRRAMLATISHELRTPVTVIRGLGEALRDGLVEAGPAARRQAGQ-IVAEAERLG 303 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L++D+ LA ++ G + L L E ++ + E R +V + G G++ Sbjct: 304 RLIDDLFQLAQIETGQLDLRLERFAAGPWLEERATALEALVRERGARWQVRVDPGLAGAW 363 Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738 + AD RL Q+ ++ NA + V L A G V +NG I P D+ + + Sbjct: 364 LEADPHRLAQVLGNLVDNAARHAGPEGQVRLDAVLVPGGIRIEVADNGPGIDPADLPR-I 422 Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F F + RG GLGLSIV + + HGG V + S+ Sbjct: 423 FEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVESA 461 >gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32] gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32] Length = 808 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 12/221 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ F+ ++S+E+R+P+ IIG + LL + +Q +YV+ ++ SS LL+L+ Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683 NDILD + ++AG ++L + + + +V+ + K + ++ ++ D K+ + V D Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGD 355 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737 +L Q+ + ++ NA+ F+ G ++ + F V ++G I ED +S Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415 Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 VF++F R G GLGL+I + + L G + ++S Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456 >gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] Length = 827 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 130/262 (49%), Gaps = 15/262 (5%) Query: 526 LEYSIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 ++ IIPL N Q ++ F+ ++T+ R E L + R+A+E K++F+ +S+E+ Sbjct: 413 IDIDIIPLRNEQGVVERFIAIERDITEVKRLESDLETEALKARRANEAKSAFLATMSHEI 472 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+PL ++G +L + +Q + + S LL+++NDILDLA V++ + L Sbjct: 473 RTPLNGLLGMLQILNDD---IRDLEQRKVLRLALNSGEHLLSILNDILDLAKVESDALAL 529 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSN 697 + + D++ V+ + E I V SD + D R+ Q+ ++ N Sbjct: 530 DIHPFKMADIITPVEVTYQGLCSEKGIVFNVDNHCSDD--CYYCGDSVRIRQVLLNLVGN 587 Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755 A+ F+ G + A ++ F V+++G IP+D S+FN F R+ G G Sbjct: 588 ALKFTKTGHINVCIKALESPFVEFCVEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTG 647 Query: 756 LGLSIVESFINLHGGHVSISSS 777 LGL+I + + L G +S+ S Sbjct: 648 LGLAICQKLVTLMNGQISVESG 669 >gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI] gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 487 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 3/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +K AL + D+ + FV +VS+ELR+PL+ ++G+T+ L L ++ + +Y+ I Sbjct: 249 LQDKVAALERLDQTRREFVANVSHELRTPLSIMLGYTEAL-IDGLAHSDTDRQKYLNNIH 307 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 L LV ++LDL+ ++AG + + + V + + ++ Sbjct: 308 EEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVELRNSLP 367 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L +A+ RL Q+F +L NA+ + G V + A + S+ + G IP + Sbjct: 368 SVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEMTAYELKNELRVSISDEGHGIPPEE 427 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V+ RF V + G GLGL+IV+ + HGG V I+S E +T + IP K Sbjct: 428 QPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFTIPKK 486 >gi|309792184|ref|ZP_07686656.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225725|gb|EFO79481.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 887 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 1/249 (0%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ +A+ AL + + E+K+ FV S+E R+PL I+ T+ L + Sbjct: 631 TLYDMTERKQADDALRLAWQKEHELSELKSRFVSMASHEFRTPLAAILATTETLTIYRDR 690 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 ++ ++ I + ++ D+L LA + AG M+ L+ L E+ + T Sbjct: 691 MNEAQIDARLDKIRQQVMHMKEIMEDVLQLARIQAGRMEFRPLIEDLDALCREIVEEYET 750 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 ++ + RI + D + + QI S ++SNA+ +S+ S+V + R+ I Sbjct: 751 QVRQPG-RIAYSCPQRPVLAEIDPRLMRQIISNLISNALKYSAPQSSVCITLQREVQRVI 809 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 +V + G IP + K +F+ F + G G GLGLSI I+LH G + I+S + Sbjct: 810 LTVTDQGIGIPPNDLKRLFDPFHRATNVGTIAGTGLGLSIAHQAIDLHHGTIHIASEVDQ 869 Query: 781 VTTINCRIP 789 TT+ IP Sbjct: 870 GTTMTVTIP 878 >gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] Length = 909 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 27/250 (10%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKT L++ Q+ Y++ I S+ LL Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTD----LSATQTDYLQTIERSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++AG + L + L + L+EV +A HE + + + + + Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCK 736 + D RL Q+ + +L NA+ F+ G+ I R+ + + + G I E Sbjct: 402 IGDSLRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTGIGISERQQS 461 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS---------------DE 779 +F F RR G GLGL I + + GG + S +E Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITLDLNE 521 Query: 780 GVTTINCRIP 789 G+ T+ R+P Sbjct: 522 GMLTLPSRLP 531 >gi|260773473|ref|ZP_05882389.1| aerobic respiration control sensor protein ArcB [Vibrio metschnikovii CIP 69.14] gi|260612612|gb|EEX37815.1| aerobic respiration control sensor protein ArcB [Vibrio metschnikovii CIP 69.14] Length = 783 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 17/250 (6%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ L +Q ++ Sbjct: 264 RDITERKRHQESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LTDEQRKH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L ++ NDI+D+ D ++L + + + + E++ A + +R Sbjct: 321 MQTIQVSAITLGHIFNDIIDMDKFDRRKLELLPAPLNFVEFVAELESLSALMAEQKGLRF 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKN 725 + +L +++ D RL Q+ ++SNAM F+ +G V+ +A N D +++ Sbjct: 381 DLERLTELPTWIEVDATRLRQVLWNLMSNAMKFTKEGGVVMSVSADINPGSADITMEIED 440 Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 G IPE +F + S G G+GL++ INL G + + SS+EG Sbjct: 441 TGIGIPEHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMAGDIEV-SSEEGFG 499 Query: 783 ---TINCRIP 789 T+ R+P Sbjct: 500 STFTVTIRVP 509 >gi|269957270|ref|YP_003327059.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894] gi|269305951|gb|ACZ31501.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894] Length = 347 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 16/244 (6%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A + E L +D + + +VS+ELR+P+ + + + + + +E Sbjct: 100 AFNQMAEDLESSDRTRRDLIANVSHELRTPVAALQAQLE----NMVDGVTEPTPATLELS 155 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 A + L LV +LDL+ V+AG L S + + DLL E QS++ N+R V + Sbjct: 156 LAQTERLTRLVTYLLDLSRVEAGASALTISELAVGDLLEECAQSLSMVEAVKNLRYVVDV 215 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731 + L AD +RL QI +L NA+ S G + L A + D + V ++G I P Sbjct: 216 TPSDL-VLEADAERLRQIVVNLLQNAIRHSPPGGEIRLDAYPEGDDVVIEVADDGPGIAP 274 Query: 732 EDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787 ED + VF RF RG+ G G+GL+IV ++LHGG V++ S G T+ Sbjct: 275 EDRDR-VFERFA----RGKVTASGGTGIGLAIVRWAVDLHGGQVAVVDSPGGAGATMRLV 329 Query: 788 IPSK 791 +P++ Sbjct: 330 LPAR 333 >gi|239624689|ref|ZP_04667720.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239521075|gb|EEQ60941.1| integral membrane sensor signal transduction histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 378 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTILL 621 R+++ KN + +V+++LR+PLT+IIG+ +LL +K+ + Q +Y+E + L Sbjct: 138 RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNTKIPA--DMQHKYIEIAYGKARRLE 195 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+ D+ ++ G + ++ + + + LL ++ + E N+ + S+ Sbjct: 196 KLIEDLFGFTKLNYGKISMHVAQVDVVKLLGQLLEEAYPNFVEKNLSYDLQSNIPAKIIT 255 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 AD L ++F ++ NA+ + + G V++K D+ SV N G IP D +FN+ Sbjct: 256 ADGNLLARLFDNLIGNAIKYGADGKRVLVKIHGDDDVVTVSVTNYGYVIPPDELPLIFNK 315 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788 F V + G GLGL+I + +++HGG + ++S G V T+ ++ Sbjct: 316 FYRVEQSRSSSTGGTGLGLAIAKEIVDMHGGTIQVASDLNGTVFTVKLQV 365 >gi|197120858|ref|YP_002132809.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] gi|196170707|gb|ACG71680.1| integral membrane sensor signal transduction histidine kinase [Anaeromyxobacter sp. K] Length = 307 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 3/228 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 + +++ FV VS+ELR+PLT+I F + L+ +L +Q + +E ++ + L L Sbjct: 74 RVAKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQD-PQRQREALEIVAEETARLSGL 132 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 +N +LD A +++G S L +L+ + ++ + ++++ +L S +AD Sbjct: 133 INRLLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMAD 192 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742 R L++ +L+NA ++ + L A +V +NG IP+ K VF++F Sbjct: 193 RSALVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFY 252 Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 S+ R G GLGL++V+ + HGG VS+ S T +P Sbjct: 253 RASDPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 300 >gi|134096880|ref|YP_001102541.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] gi|133909503|emb|CAL99615.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] Length = 504 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 12/232 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LR D + FV V+++LR+P +++ D L+ S +S+ V +S Sbjct: 265 LGDSIEELRVKDRQQQRFVADVAHDLRTPTASLVAAADSLEHPDPES----RSRAVALVS 320 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L LV+D+L+++ D+G +L + L +L V+++I + ++R+ +D Sbjct: 321 TQARRLARLVDDLLEISRFDSGAAELRPEGVDLREL---VREAIELVTCDADVRLDATAD 377 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L V D +RL I +L+NA+ ++ TV + D G + V ++G +PE++ Sbjct: 378 TTL---VGDPRRLHTIVCNLLANAVHHGAEPVTVAIDGT-DPGQVVLRVADSGPGVPEEL 433 Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +F+RFV + R G GLG++I + +HGG +++ + V T+ Sbjct: 434 TRILFDRFVRGDRARSATDGSGLGMAIAQQNALVHGGRITVHNDGGAVFTLT 485 >gi|115376098|ref|ZP_01463343.1| KfaA [Stigmatella aurantiaca DW4/3-1] gi|115366913|gb|EAU65903.1| KfaA [Stigmatella aurantiaca DW4/3-1] Length = 625 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 DS R + L L+ ++ + + +VS++L++PLT I + L+ KLG L Q Sbjct: 216 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKAYLTLVGREKLGPLTDGQ 275 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + V+ +S +L +VND+L ++ + +G M+L + + EV +++A + Sbjct: 276 RRAVQICERNSDRMLRMVNDLLLMSRLQSGKMQLTQRAFGIKAVAEEVLRALAALAEHSQ 335 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 +R+ V ++ FV DR+R+ + ++ N + +G TV ++ + D + SVK+ Sbjct: 336 VRLHVPPCPEV--FVRGDRERISEAIHNLVENGIHQCEEGGTVEVRVSIDEQLALLSVKD 393 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVG-LGLSIVESFINLHGGHVSISS 776 +G + ++ + +F+ F R G LGL +V + LHGG V SS Sbjct: 394 SGPGLSQEDLEHIFDPFYRTTPGTPRPSGGRLGLPLVAKILALHGGRVDASS 445 >gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 903 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 132/244 (54%), Gaps = 12/244 (4%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611 + L + LR A+E K+ F+ ++S+E+R+P+T+IIG+ D + LG + + ++ V+ Sbjct: 411 QMLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGI---ILGDIEPRNHAKAVQ 467 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 I+ + +L ++NDILD++ ++A +++ + L + V+ + ++ + + KV Sbjct: 468 VIAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQIRDKGLEFKV 527 Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 + + L + + D RL QI + +NAM F+ G+ ++ + +D I V+++G + Sbjct: 528 LYEFPLPNKIIIDPTRLRQILLNLTNNAMKFTDYGAITLIVSFKDE-KLIIRVRDSGIGM 586 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS----SDEGVTTI 784 ++ + +F F R+ G GLGL+I ++ + GG +S+ S E + T+ Sbjct: 587 TKEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEIGKGSEFIVTL 646 Query: 785 NCRI 788 CR+ Sbjct: 647 TCRL 650 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL ++Q Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G I +D + +F+ F R+ G GLGLSI + +++ GG Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928 Query: 772 VSISS 776 + + S Sbjct: 929 MQVQS 933 >gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 456 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 100/339 (29%), Positives = 164/339 (48%), Gaps = 34/339 (10%) Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505 GV F + RI L N A R + + L G HI I Y DLF + Sbjct: 124 GVIAFDNNERILLINDAARKILNIKGKDLI-GKHILEIVRNSKLY-------DLFEDVKK 175 Query: 506 SFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564 + + KSL+ L + + + Y S I P + L FV + D + TE +R+ Sbjct: 176 NKNSPSKSLE--LNVFNKHLKVYTSPILHPISHQNLGFVLIIDDI------TE----MRR 223 Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 ++I+N FV +VS+ELR+PLT+I GF + L+ + + ++ ++++ I S L L+ Sbjct: 224 LEKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARD-KFLDIIDFESERLTRLI 282 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFV- 681 NDIL L+ ++ +K Y T +L NE++ I KM N I +I D V Sbjct: 283 NDILTLSEIEN--VKEGYPT-EETELDNEIEDILYIMDKMARNK-NITLIKDLNCPGLVI 338 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVF 739 ++ R Q+ ++ N + ++ +G V + + R+ GD I VK+NG I ++ +F Sbjct: 339 NTNKDRFHQMMINLIDNGIKYTPEGGFVKV-STREEGDKIIIEVKDNGIGISKENIPRLF 397 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 RF V + + G GLGL+IV+ + G +S+ S Sbjct: 398 ERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436 >gi|189464941|ref|ZP_03013726.1| hypothetical protein BACINT_01285 [Bacteroides intestinalis DSM 17393] gi|189437215|gb|EDV06200.1| hypothetical protein BACINT_01285 [Bacteroides intestinalis DSM 17393] Length = 664 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%) Query: 553 RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 R L E E LRKA E+ K F+Q++S+E+R+PL +I+GF+ +L + L+ K Sbjct: 425 RILIEAKEELRKAKEVAEQSNWLKTMFIQNMSHEIRTPLNSIVGFSGVL----VDMLDDK 480 Query: 606 Q--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 + QYV I ++S +LL LV DILD++ +D+ + ++ ++ + +N + T Sbjct: 481 EDIGQYVALIESNSKLLLKLVGDILDISILDSEV-EIKHNAVDVNACCQASIDAAGTLFS 539 Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720 + K+I + ++ ++Q+ +LSNA F+ +GS T+ + ++ I Sbjct: 540 PDT---KLIFKPACDELIINSNYNYIVQVLDNLLSNASKFTHEGSVTLAYEVKKETNQLI 596 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779 F+V + G IP D + VF RFV + Q G GLGLSI GG + I + Sbjct: 597 FTVTDTGIGIPIDEQEHVFERFVKLDNFSQ--GAGLGLSICRIVAERLGGFLIIDREYTQ 654 Query: 780 GVTTINC 786 G I C Sbjct: 655 GTRFIFC 661 >gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] Length = 620 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 39/285 (13%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567 RKS+Q L++ D + T+ +AE A E A KA+ + Sbjct: 113 RKSIQSQLKIAKD-------------------IAETEKKQAEIARKEAEVAQEKAEIANQ 153 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K+ F+ +S+ELR+PL I+G+ +L+ K SLN++Q + + S LL L+NDI Sbjct: 154 AKSEFLASMSHELRTPLNGILGYAQILRRDK--SLNNQQQYAIHTMQKSGEHLLTLINDI 211 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686 LDL+ ++A M+L+ + L E+ I + + + + L V D R Sbjct: 212 LDLSKIEAQKMELHQQDFHFSHFLTEIVDMIQVRAMPKTLEFQHDFEANLPIAVNGDETR 271 Query: 687 LLQIFSKILSNAMDFSSKGST---VILKAARDN----------GDFIFSVKNNGSSIPED 733 L QI +L NA+ F+ +G VIL ++ + F +++ G I + Sbjct: 272 LRQILVNLLGNAVKFTERGKVTFKVILIGEKEKKIENRESSPLPNIRFQIEDTGPGIAPE 331 Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 K++F F R G GLGL + + F+ + + ++S+ Sbjct: 332 FLKTIFEPFQQVGTERYITEGTGLGLPLSQKFVEMMDSSLQVTST 376 >gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200] Length = 1770 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%) Query: 538 TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595 +++ V++T+ + ++ L K EA A + K F+ ++S+E+R+P+ IIG + L L+ Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 T+ L+ KQ YVE I +S LL+++NDILD + ++AG + ++ L+ +L ++ Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123 Query: 656 QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710 + K +H+ + ++ D RL Q+ +++NA+ F+ +G + ++ Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183 Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768 + D+ FSV+++G + ++ +F F R+ G GLGL+I + + L Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243 Query: 769 GGHVSISS 776 GG++ + S Sbjct: 1244 GGNIGVES 1251 >gi|91210085|ref|YP_540071.1| hybrid sensory histidine kinase TorS [Escherichia coli UTI89] gi|117623191|ref|YP_852104.1| hybrid sensory histidine kinase TorS [Escherichia coli APEC O1] gi|218557884|ref|YP_002390797.1| hybrid sensory histidine kinase TorS [Escherichia coli S88] gi|237707026|ref|ZP_04537507.1| sensor protein TorS [Escherichia sp. 3_2_53FAA] gi|91071659|gb|ABE06540.1| sensor protein TorS [Escherichia coli UTI89] gi|115512315|gb|ABJ00390.1| sensor protein TorS [Escherichia coli APEC O1] gi|218364653|emb|CAR02339.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli S88] gi|226898236|gb|EEH84495.1| sensor protein TorS [Escherichia sp. 3_2_53FAA] gi|307627594|gb|ADN71898.1| hybrid sensory histidine kinase TorS [Escherichia coli UM146] gi|323953312|gb|EGB49178.1| TMAO reductase sytem sensor TorS [Escherichia coli H252] gi|323958286|gb|EGB53995.1| TMAO reductase sytem sensor TorS [Escherichia coli H263] Length = 910 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + + R G GLGL+I GG +S +S+ E + R+P Sbjct: 615 PFVQVSSK--RGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 >gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1080 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 14/226 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +++E+R+P+T IIG D+ S G L + +++E + +SS LL+++N +LD + Sbjct: 269 FLAAITHEVRTPMTGIIGLLDI---SLRGQLEPRLREHLEIVRSSSHALLDVINGVLDFS 325 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690 ++AG +++ L + + +V + E ++ + + L VA D RL Q+ Sbjct: 326 RIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQV 385 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 I+ NA F+ +G V+ + GD F+V++ G IP + K +F F Sbjct: 386 LVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQAD 445 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT----TINC 786 RR G GLGL+I + L GG + + S+ T T++C Sbjct: 446 ASVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFTVHC 491 >gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 584 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 5/229 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R + K++FV S+ELR+PLT I LL+ ++ L+ +++ +E + + Sbjct: 347 RALERAKSAFVSDFSHELRTPLTTIQSAVGLLQRARE-RLDPLENRALELAEGELSRIRA 405 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 +V +++ LA +D+ L + L+ +L + +++ K I I + G Sbjct: 406 MVEELMTLAQMDSWQYSLQLAPAGLDRILRDAVEAVEPKALRFGIEINLYEAGV--HLTC 463 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D Q+L Q+F +L NA+ +S +GS V + A + VK+ G IPE +F RF Sbjct: 464 DAQKLYQVFLNLLDNAVKYSEEGSRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFERF 523 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 V G GLGL+I + + +HGG +S+ S +T R+P Sbjct: 524 YRVEKDRSRSTGGSGLGLAICKQIVEMHGGSISVESRLGEGSTFTVRLP 572 >gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] Length = 2415 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 18/232 (7%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ ++S++LR+P+T +IG ++LLK +KL + KQ YVE I + LL L+ Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1938 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGKLGSF 680 NDILD + ++AG MK++ I L + EV +++ E + + I L Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDLL--V 1996 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736 + D RL QIF +LSN+ F+ GS + ++ V + G I E+ Sbjct: 1997 MGDPVRLHQIFMNLLSNSYKFTPVGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLD 2056 Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784 +F F S A R G GLGLSI ++ I ++ GG + + S + TT+ Sbjct: 2057 RLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107 >gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1070 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 5/252 (1%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T RAE AL E + ++K+ F+ ++S+ELR+PL I+G++++L+ Sbjct: 542 LDITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMG 601 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + + I ++ LL L+ND+LD++ ++AG M + + + L+ +V +I + Sbjct: 602 AQEMVGDLAKIHSAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLV 661 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719 +N + LG+ D ++ QI +L+NA F+ GS + + R+ Sbjct: 662 RKNKNHFHLECGQNLGAMHTDLTKVRQILFNLLNNAAKFTQNGSITLRVQCQEDREIPTI 721 Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 F V + G I + S+F F R+ G GLGL+I +S+ +L GG ++ S Sbjct: 722 SFQVIDTGIGIEQQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSK 781 Query: 778 DEGVTTINCRIP 789 +T +P Sbjct: 782 PGAGSTFCLTLP 793 >gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] Length = 926 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + EA K+ F+ +S+E+R+P+ IIG TDL T K + + + ++ I Sbjct: 543 LQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDL--TCKERDVPPEIEKKLKKIR 600 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +SS LL L+NDILD++ ++ G M++ L+ +L E++ ++T+ + + +V Sbjct: 601 SSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQAEQKGLEFQVDFY 660 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSI 730 D RL Q+ +LSNA+ F+ G V L+ + + ++ FSV++ G I Sbjct: 661 VSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEMEYRFSVQDTGVGI 720 Query: 731 PEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 P + + +F+ F S +H G GLGL I + L GG + + S Sbjct: 721 PYEDQERIFSSFEQLRPSISHSA---GTGLGLPISRNIARLMGGDLEVKS 767 >gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis YPIII] gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 942 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + I++ Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ V++KA A + + + G I E Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461 Query: 737 SVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776 +F F ++A R G GLGL I E + GG++S S Sbjct: 462 QLFQAFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQS 503 >gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 496 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 7/213 (3%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ +S+ELRSPL I+GF L+ S L Q ++ I + LL L+ND+L Sbjct: 117 KSDFLSSMSHELRSPLNAILGFAQLM-ASDLPPPTPSQQASIDQILRAGWHLLELINDVL 175 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DLA +++G + ++ + L D L E + I + + IR+ ADR R Sbjct: 176 DLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRADRTRFR 235 Query: 689 QIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSV---FNRFVS 744 QI +LSNA+ ++ V + R G SV++ G + ++ + FNR Sbjct: 236 QILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPFNRLGQ 295 Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 +A G G G+GL + + L GG + S+ Sbjct: 296 DA--GAEEGTGIGLVVAKRLTELMGGAIGADST 326 >gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 989 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 9/249 (3%) Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 + QT V + D + +AL E +A A K+ F+ ++S+ELR+PL I+G+ Sbjct: 503 SGQTAHVIVIIQD-ISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGY 561 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650 +L+ + L+++Q V I S LL L+NDILD A + AG ++L + L Sbjct: 562 AQILQ--RDARLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGF 619 Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709 L + + +A + + + + ++ L + V D +RL Q+ +L+NA+ F+ G + Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDHGEVTL 679 Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768 + G F V++ G + D +++F F + H + G GLGL+I + + Sbjct: 680 SVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRGGGAGLGLAISRQLVRMM 739 Query: 769 GGHVSISSS 777 GG + ++SS Sbjct: 740 GGEIEVTSS 748 >gi|301062848|ref|ZP_07203441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300443048|gb|EFK07220.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 444 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 15/251 (5%) Query: 549 VRAERALTEK-----NEALRKADEIKNSF---VQHVSYELRSPLTNIIGFTDLLKTSKLG 600 VR ER ++ NE L K D + + + +V+++LR+P+T + G + L Sbjct: 193 VRKERGEMDELVGLFNEMLDKNDSLIQAMHNSLDNVAHDLRTPMTRLRGVAEF----ALQ 248 Query: 601 SLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 ++++ + + S +L ++N ++D+A + G+M+L + + L+ ++ +V Sbjct: 249 DATNREACREALGDCMEESERVLTMLNTLMDVAEAETGVMRLQKTALSLSHVIEDVVDLY 308 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 E N + + D K ADR RL Q+ + +L NA+ + KG TV +++ + + Sbjct: 309 EIVAEEQNTNVHLNLD-KTIMIQADRTRLQQVLANLLDNALKYGGKGGTVSVESMAEGAE 367 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 + SV + G I E+ ++ R + RRG+GLGLS V++ + HGG V + S Sbjct: 368 AVISVSDKGMGIAENEISRIWERLYRGDYSRSRRGLGLGLSFVKAIVEAHGGSVQVKSRL 427 Query: 779 EGVTTINCRIP 789 +T ++P Sbjct: 428 REGSTFIVKLP 438 >gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 789 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 7/221 (3%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +S+ELR+PL I+GF LL +L+++Q+ V+ I + LL VN++LDLA Sbjct: 545 FLSRMSHELRTPLNAILGFGQLLAMPGDAALSAEQADNVQEILRAGRHLLGQVNEVLDLA 604 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690 V++G ++L + L ++ + + I I I D L AD +RL Q+ Sbjct: 605 RVESGRIELKLEAVPLAPIVADCVALVRPLAEARGISIDADIDDAPL---RADAKRLQQV 661 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748 +LSNA+ F+ + T+ + R G +V ++G I + + +F F +++A+ Sbjct: 662 LLNLLSNAIKFNREQGTIRIAGTRHGGRLRLAVSDSGRGIDSEHLQRLFQPFERLASAYD 721 Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 G G G+GL++ + + GG + ++S + +T + +P Sbjct: 722 GI-EGTGVGLALTQRLVEAMGGIIQVASQLDVGSTFSLDLP 761 >gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105] gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105] Length = 1023 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 20/236 (8%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYV 610 E A+ K E A+ K+ F+ +S+E+R+PL I+GF LL+ G L + Sbjct: 641 ETAIAAKAEKDSNAE--KSRFLATMSHEIRTPLNGIMGFARLLEMDLPAGELKEQAG--- 695 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 Y+ SS L ++NDILD + +++G++KL S ++ LL + ++ + Sbjct: 696 -YLVQSSETLSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCESKGVKFE 754 Query: 671 VISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSV 723 + + KLG F D RL QI +LSNA+ F+S G TV N D I F V Sbjct: 755 L--NNKLGEHQIFSGDMGRLRQILQNLLSNAIKFTSHGKVSLTVSNTQISPNEDLITFEV 812 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 + G IP++ +F F S H + G GLGLSIV+S IN GG + + S Sbjct: 813 SDTGLGIPKEKQSLLFKPF-SQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLES 867 >gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1080 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 14/226 (6%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ +++E+R+P+T IIG D+ S G L + +++E + +SS LL+++N +LD + Sbjct: 269 FLAAITHEVRTPMTGIIGLLDI---SLRGQLEPRLREHLEIVRSSSHALLDVINGVLDFS 325 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690 ++AG +++ L + + +V + E ++ + + L VA D RL Q+ Sbjct: 326 RIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQV 385 Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 I+ NA F+ +G V+ + GD F+V++ G IP + K +F F Sbjct: 386 LVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQAD 445 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT----TINC 786 RR G GLGL+I + L GG + + S+ T T++C Sbjct: 446 ASVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFTVHC 491 >gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 974 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 A+ + +K + L + + K+ F+ ++S+ELR+PL +++ + L +K +L+ Q + Sbjct: 531 AKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQVESA 590 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 I S LL L+ND+LDL+ +++G M +N +VL E+ + + E + + Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650 Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 +I D L + D RL QI ++SNA+ F+ +G + ++ +FSV ++G Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKILFSVIDSGIG 710 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPE+ ++F F R+ G GLGLSI L GG + + S +T + Sbjct: 711 IPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSLS 770 Query: 788 IP 789 +P Sbjct: 771 LP 772 >gi|298252237|ref|ZP_06976040.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546829|gb|EFH80697.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 968 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 16/232 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD----LLKTSKLGS-LNSKQSQYVEYIS 614 E +R+++++K+ F+ ++E R+PLT I+ + LL+ +L L K + + I Sbjct: 715 ELMRQSNDLKDEFLDITAHEFRTPLTIIVAHSQMMARLLRKHQLEPVLQDKLHESIATID 774 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVI 672 L N+VN L++ ++ G + LN + + ++ + ++ + MH +++ Sbjct: 775 QQGHQLTNIVNTFLEVTRLNRGQIVLNTEELDVQRIVERTVAEHAMTSPMHTITCQVQTG 834 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD-FI-FSVKNNG 727 + L + D RL Q+F+ +L NA+ +S G ++ + + +GD F+ +++ G Sbjct: 835 AHPYL--ILGDSARLSQVFANLLQNAIKYSPFGGSITVTLQQTPNASGDPFVEIRIQDQG 892 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 IP D +F RF N + RGVGLGL +V F++LHGGH+ + SS Sbjct: 893 IGIPLDAQARLFERFYRAPNIEGNKTRGVGLGLYVVAQFLSLHGGHICVESS 944 >gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60] Length = 956 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 7/255 (2%) Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597 + V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T Sbjct: 442 AICAMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK 501 Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657 +L + + + +S SS +LL ++NDILD + +++ +K+ V +++ + + Sbjct: 502 ---TLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGN 558 Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 + + + + + + D R+ Q+ S +LSNA+ F+ G +IL+A ++ Sbjct: 559 YLPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVND 617 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 F V++ G IP +F+ F QR G GLGL+I E ++L G +++ Sbjct: 618 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 677 Query: 775 SSSDEGVTTINCRIP 789 SS + R+P Sbjct: 678 ESSPGLGSIFTIRLP 692 >gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 479 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 10/215 (4%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++++ FV +VS+E+R+PL+ + G+++ L + S + ++ + I S + LV Sbjct: 243 EKMRRDFVANVSHEIRTPLSMMQGYSEAL-LDGMASSPEESAELAQVIYDESLRMGRLVR 301 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684 D+LDLA ++AG + I +L V + + +N + + + + DG+L AD Sbjct: 302 DLLDLARMEAGHTDMVMRKIDFRELAERVDRKFQVRAKDNGVELVLELEDGEL-QLQADE 360 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740 RL Q+ + +L NA + +G V +KA + G+ +V + G IP + + +F+ Sbjct: 361 DRLEQVLTNLLDNAFRHTPEGGKVTVKAHMETGEMGKQLHVAVSDTGVGIPSEDLRYIFD 420 Query: 741 RFVSNAH---RGQRRGVGLGLSIVESFINLHGGHV 772 RF RG+ G GLGLSIV++ I H G + Sbjct: 421 RFYKADKARVRGENGGTGLGLSIVKNIIAAHHGSI 455 >gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 573 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 17/254 (6%) Query: 551 AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 A + L +KN+ L +A +++K+ F+ + S+ELR+PL IIGF L+ + Sbjct: 289 ANQTLRQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLV-LDGMAESR 347 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++ +++ S+ LL L+ND+LD+A ++AG M+L + L L +V+ + Sbjct: 348 EEELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEAKTGLQAK 407 Query: 664 ENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGD 718 + +++ + D QRLLQ+ ++ NA+ F+ KGS V ++A D G Sbjct: 408 QKGLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADLLPGDPGM 466 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G + + + +F F V + Q G GLGL+I + + GG ++ S Sbjct: 467 ARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYS 526 Query: 777 SDEGV-TTINCRIP 789 EG+ +T+ +P Sbjct: 527 LGEGLGSTVTFTVP 540 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL ++Q Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G I +D + +F+ F R+ G GLGLSI + +++ GG Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928 Query: 772 VSISS 776 + + S Sbjct: 929 MQVQS 933 >gi|311031670|ref|ZP_07709760.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13] gi|311032342|ref|ZP_07710432.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13] Length = 549 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++ ++ R R + EKNE R++ + K +F+ +S+ELR+PL +IIG++ +L++ + L Sbjct: 300 LHLKENERKLRLIIEKNEVERES-KTKTNFLAMISHELRTPLNSIIGYSQVLESDQKDPL 358 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLNEVKQSIAT 660 KQ + I +SS LL L+N+IL+L +D +K N I + D + + +++ Sbjct: 359 TDKQKSRLAKILSSSRHLLQLINNILELIRIDTNPETIKTNVKPIRIKDAVWDSLHAVSN 418 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 E I + + D + + D R Q+ +L+NA+ ++ + TV L D Sbjct: 419 NAKEKGISLYIEKDVEDITIEIDPIRFQQVLVNLLNNAIKYNKENGTVTLYWRVDGRYLA 478 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 VK+ G IP+ ++F F V++A G G G+GL++V+ + G V +SS + Sbjct: 479 IFVKDTGIGIPQSHHDNIFEPFYRVNHAIPGV-EGTGIGLTLVKQNVLEMKGTVGVSSIE 537 Query: 779 EGVTTINCRIP 789 +T ++P Sbjct: 538 GTGSTFWVKVP 548 >gi|300697800|ref|YP_003748461.1| sensory histidine kinase in two-component regulatory system with BaeR [Ralstonia solanacearum CFBP2957] gi|299074524|emb|CBJ54075.1| sensory histidine kinase in two-component regulatory system with BaeR [Ralstonia solanacearum CFBP2957] Length = 533 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 17/240 (7%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615 E L +++ +S+ELR+PL + G D ++ SL S Q++ Sbjct: 290 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 343 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672 L L++D+ +L+ D G + + I L D + Q +++ E I +++ Sbjct: 344 --GTLSKLIDDLYELSLADVGALAFHMEAIDLTDTVCSAAQGFTSRLMEKRIALQLDLPT 401 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 + + D QRL Q+ +L N + ++ G T+ ++ RD + V+++ +PE Sbjct: 402 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIRVHRDGAWWCLDVQDSAPGVPE 461 Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 M VF+R F ++ R + + G GLGLS+ ++ + HGG + S G + R+P+ Sbjct: 462 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQAHGGTIEARPSPLGGLWLAIRLPA 521 >gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 655 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 34/348 (9%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPA--------FRSLWKTEENRLSPGTHIRNIAATCSRYY 491 +D EG+ DG+I NPA R L ++ +++ G H R + T + Sbjct: 307 LDSAGEGICGLNRDGKITFINPAGARMTGYDIRELIMSDLRQITKG-HCR--SQTPGEPH 363 Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQT-MLTFVNVTD 547 +S + I + +D G + ++D V + +I+P+ T M + Sbjct: 364 PDSLQP---SPIFATLED------GKVRYVTDGVFWRKDGTILPVEYVSTPMRQEGAIIG 414 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 +V + +TE+ +A+ K +K+ F+ VS+ELR+PLT+I G LL + L S K Sbjct: 415 AVITFKDITER-QAMEK---MKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPQKSE 470 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 + ++ + L+ LVNDILDL + +G + + + + DL+ + + + + Sbjct: 471 RMLDIAMFNCDRLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGV 530 Query: 668 RIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 + V+ + K+ + DR R++Q+ + +LSN++ FS + A + SV++ Sbjct: 531 DLCVVPLEFKV---MVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENHVLISVRDR 587 Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772 G IP D +++F RF V + Q G GLGL+I S + HGG + Sbjct: 588 GRGIPPDKIETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKI 635 >gi|239906623|ref|YP_002953364.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796489|dbj|BAH75478.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 484 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 11/235 (4%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++ + ++ F+ VS+E+R+PLT+I +L++ LG +N +Q ++++ S + Sbjct: 248 LKEEERMRADFIDMVSHEIRTPLTSIRESVNLMRERVLGDVNERQKRFLDIASDELQRIS 307 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++ +L ++++ + I+ L T +LL E + +I + + S V Sbjct: 308 AMLTSLLKVSSMASQIVDLAPVTFNPEELLRETLEKAGPGAEAKDIALTPRVAKDIVSVV 367 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 DR+ L Q ++ NA+ FS G TV L+ A + S+ + G IPE+ VF Sbjct: 368 GDRELLGQALYNLVGNAVKFSPAGRTVRVGLELADGGQKVLASISDEGPGIPEEEQAYVF 427 Query: 740 NRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N++ +RG R G+GLGLSI ++ + HGG++ +SS T IP Sbjct: 428 NKY----YRGARTKRSTDGIGLGLSIAKTIVEAHGGNIWLSSLPGKGCTFYFTIP 478 >gi|229103156|ref|ZP_04233842.1| Sensor histidine kinase [Bacillus cereus Rock3-28] gi|228680261|gb|EEL34452.1| Sensor histidine kinase [Bacillus cereus Rock3-28] Length = 312 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 3/239 (1%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E + R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I Sbjct: 74 LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 T L L+ND+ + V + L + I + +LL ++ ++ E NI+ + Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 + +AD +L+++F ++ NA+ + ++G + L A N + N G IP Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252 Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 +F RF V + G GLGL+I +S + LH G + + S D+ T +P K Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311 >gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] Length = 1129 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 7/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ A+++K+ F+ S+ELR+PL ++G + L + G + + Q ++ Sbjct: 444 KTIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670 I S L LV+D+LD + G + + S + L+ + V + + IRI + Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V SD LG +D QRL Q+ ++ NA+ ++S+G VI + D+ + V + G I Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620 Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + +F + R+G GLGLSI I L GG + +SS TT + + Sbjct: 621 PAEYLEHIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680 Query: 789 P 789 P Sbjct: 681 P 681 >gi|294491224|gb|ADE89980.1| sensor histidine kinase/response regulator TorS [Escherichia coli IHE3034] gi|315287606|gb|EFU47012.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 110-3] Length = 900 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ IR+ I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + + R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVSSK--RGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|187776723|ref|ZP_02993196.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC 15579] gi|187775382|gb|EDU39184.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC 15579] Length = 906 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 128/243 (52%), Gaps = 7/243 (2%) Query: 554 ALTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVE 611 A T+KN L +++ ++++ ++ +S++LRSPL I G + +++ L S N K+ + ++ Sbjct: 663 AETQKNSKLEIESERLRSNLLRSISHDLRSPLAGIKGSVSTIIENGNLIS-NDKKEELLQ 721 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + + L+ LV ++L + + G M++ + ++ +++ E Q + + + I++K+ Sbjct: 722 GVYDDTEWLIRLVENLLSMTRFEEGNMEIKKNMELVEEVIYEAVQRTSKRFKDRKIKVKI 781 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 + + D + Q+ +L N++ F+ K S + ++A F V +NG+ I Sbjct: 782 PENVIMAPM--DGSLIKQVLINLLDNSLKFTPKDSLIEVRAYEKEEKVFFEVIDNGNGIS 839 Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 E++ +F+RF +N + RRGVGLGL+I +S + H G + + G IP Sbjct: 840 EEILPHIFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHNGMIDAYNKKAGGAVFRFYIP 899 Query: 790 SKE 792 +E Sbjct: 900 KEE 902 >gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 998 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 10/233 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ + +F+ VS+E+R+P+ +IG + LL+ + +L+++Q ++ I S+ L+ + Sbjct: 350 QANAARGAFLSTVSHEIRTPMNAVIGMSGLLRET---ALDAQQEEFTVAIEDSANALMVI 406 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682 +++ILD + +DAG + + + L L+ ++A K + +R+ + L V+ Sbjct: 407 IDEILDFSRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLLCFVEPDLPVTVSV 466 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFI---FSVKNNGSSIPEDMCKSV 738 D RL Q+ ++ NA+ F+ G IL + D F V + G I + + Sbjct: 467 DAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNRQHDLCTVRFEVADTGIGITAPVIALL 526 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FN FV R+ G GLGLSI + + L GGH+ + S +T +P Sbjct: 527 FNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGAGSTFWFELP 579 >gi|315640402|ref|ZP_07895514.1| sensor histidine kinase [Enterococcus italicus DSM 15952] gi|315483840|gb|EFU74324.1| sensor histidine kinase [Enterococcus italicus DSM 15952] Length = 392 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + + YI A + Sbjct: 152 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYRSEEDLLKYTHTAYIKAKQ--MK 209 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 +LV+D+ + V L+ + + L+ ++ + ++ I I+ +++ + Sbjct: 210 SLVDDLFEYTKVRQPSNPLHVISFDMVQLIEQLAADFELEANKKGIAIQTVANPEQMMMD 269 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 D ++L+++FS +L+NA + T+I+ + + + +VKNNG IP+ +F+R Sbjct: 270 GDTEKLVRVFSNLLTNAFKYGKNADTIIMSVEKVGTEAVITVKNNGKMIPKRSLDLLFDR 329 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 F V + + G GLGL+I +S + LHGG++ +S+ + Sbjct: 330 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYIYATSNPQ 369 >gi|300855685|ref|YP_003780669.1| putative sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300435800|gb|ADK15567.1| predicted sensory transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 508 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 25/278 (8%) Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567 +DE +L TL LS N LT VN A L + E R D+ Sbjct: 243 EDEIGNLASTLNFLS-----------YNLDKALTSVNA-----ANEKLEKDIEKERNIDK 286 Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 + F+ VS+EL++P+ I G+ + LK S++ QY++ I S + NLV+D+ Sbjct: 287 ARKEFIAAVSHELKTPINLIGGYAEGLKDGIFQE--SERDQYIDIIIDESNKMANLVSDM 344 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQ 685 L+L+ +++G MKL+ ++DL+ V + + + I I +I+ K+ AD Sbjct: 345 LNLSHLESGTMKLSKEEFFIDDLIECVIRRFYKVIKDKGITINCNIITKTKI---CADWD 401 Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745 ++ Q+ + +NA+ + +G + ++ I SV+N G IPE+ ++ F Sbjct: 402 KMEQVITNFTTNAIKNTYEGGIITFAIEEESDKTIVSVENTGKGIPEEELGKIWGNFYKL 461 Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781 R+ G G+GL+IV++ + LHG + ++D G+ Sbjct: 462 DKSRNRKLGGTGIGLAIVKNILILHGYKYGVKNTDNGI 499 >gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 705 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 13/244 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T + E L A A++ K++F+ ++S+E+R+PL ++G LL+T+ Sbjct: 307 LDITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETT---DT 363 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 + +Q Y+E S L L++DILDL+ ++AG M L+ L++ + V S Sbjct: 364 SDEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVS 423 Query: 663 HENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARD 715 + +RI V D F D R+ Q+ ++ NAM F+ +G + +L D Sbjct: 424 IQKRLPVRIDVAPDVPKEVF-GDEVRVRQVLFNLVGNAMKFTDQGEVRIEVSTLLPLPPD 482 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 +F V + G+ + + K++ N F S + +G GLGLSI + + GG ++ Sbjct: 483 TVRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLT 542 Query: 774 ISSS 777 S+ Sbjct: 543 FEST 546 >gi|2541938|gb|AAB81244.1| putative ethylene receptor [Dianthus caryophyllus] gi|2541968|gb|AAB82657.1| putative ethylene receptor [Dianthus caryophyllus] Length = 630 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 46/313 (14%) Query: 500 FAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557 FAA +I+ D RK LEL+ V + + L +A T V +SVRA+ L E Sbjct: 272 FAAMVLISPSDAVRKFRDHDLELVK-VVADEVAVALSHAAT------VEESVRAQNQLME 324 Query: 558 KNEAL---RKADEI-----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQ 608 N AL R+ E+ +N F+ +++E+R+P+ II + +L LG+ L +Q Sbjct: 325 HNVALDLARREAEMAIICARNEFLSVMNHEMRTPIHAIIALSSIL----LGTELTPEQRV 380 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 +E I SS +L L+ND+LDL+ ++ G ++L+ L+ + EV I + Sbjct: 381 MLEIILKSSNLLSTLINDVLDLSRLEDGSLELDTVVFNLHGVFKEVLHLIKPIASVKKLS 440 Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR------------ 714 + ++ ++ V D +RLLQ ++ NA+ F+ +G +V AR Sbjct: 441 LTLVLAPEMPVCAVGDEKRLLQTILNVVGNAVKFTKEGYVSVSASVARPESLTNWRGPEV 500 Query: 715 ----DNGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767 +G F VK++G I P+DM +FN+F G+GLGL+I + F+NL Sbjct: 501 HPVLSDGYFYLKVQVKDSGCGINPQDM-PIIFNKF--TQFNQNTAGIGLGLAICKRFVNL 557 Query: 768 HGGHVSISSSDEG 780 GG + I S G Sbjct: 558 MGGQIWIESDGHG 570 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL ++Q Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G I +D + +F+ F R+ G GLGLSI + +++ GG Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928 Query: 772 VSISS 776 + + S Sbjct: 929 MQVQS 933 >gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 577 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++K ++++ FV +VS+EL++PLT+I GF + L + + Q++ I S + Sbjct: 347 IKKLEQMRKDFVANVSHELKTPLTSIKGFAETL-LDGAQDVPEIREQFLNIIHDESERMQ 405 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LV D+L+L+ ++ +L + + + LL+E + K E + I + ++ ++ F+ Sbjct: 406 TLVEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEV--FI 463 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD RL Q+ +++NA++++ G V + + +K++G I + +F Sbjct: 464 RADLNRLKQVVVNLVANALNYTPNGGNVWISLEDGEEAVMLRIKDDGIGIHPKEMQRIFE 523 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 RF V A G GLGL+IV+ I+LH G + + S + TT R+P K Sbjct: 524 RFYRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPKK 576 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 22/254 (8%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKL 599 T +VT ER L EA +K+ F+ ++S+E+R+PL I+G T+L L+T Sbjct: 424 TVQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILGMTELTLRT--- 480 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 L +Q +Y+ + AS+ L LV DILD + ++AG ++L L ++L + + Sbjct: 481 -GLTREQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQAALKPME 539 Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDN 716 + + + + D + + D RL Q+ ++SNA+ F+ G I L A + Sbjct: 540 MQAEAKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSGGIDIDVLPTATSH 599 Query: 717 G----------DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVES 763 + +FSV + G I + + VF+ F S+ R Q G GLGL+I Sbjct: 600 TPSGQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSR-QYEGTGLGLAISRQ 658 Query: 764 FINLHGGHVSISSS 777 + L GG + + S+ Sbjct: 659 LVELMGGAIWVESA 672 >gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1320 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 E + AL +A+ + K+ F+ ++S+E+R+P+ +IG T LL + L+ +Q + E + Sbjct: 649 ELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDT---DLDPEQRRLAEIV 705 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S LL L+NDILD + ++AG ++L + L L+ EV + +A HE ++ + Sbjct: 706 RDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRI 765 Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGS 728 ++ + V D + L Q+ ++ NA+ F+ +G + L+ A I F V ++G Sbjct: 766 APQVPTAVRGDPRYLRQVIVNLMGNAIKFTERGEVGLQLALERAEAGRALIRFEVHDSGI 825 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 IPED +F F RR G GLGL I + L G + + S Sbjct: 826 GIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLES 875 >gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1235 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 121/218 (55%), Gaps = 11/218 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+ELR+PL I+GFT ++ S+ SL+S+ + + I+ + LLNL+NDIL Sbjct: 682 KSEFLANMSHELRTPLNAILGFTQVM--SQDYSLSSEHQENLAIINRAGEHLLNLINDIL 739 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 +++ ++AG + LN S+ L LLN +++ + + ++++ + ++ D +L Sbjct: 740 EMSKIEAGRITLNRSSFDLIHLLNNLEEMLYLRAASKSLQLVFEYAHDIPQYIETDENKL 799 Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFN 740 Q+ +L NA+ F+ G T+ L+ ++ N F V++ G I +F Sbjct: 800 FQVLLNLLGNAIKFTDIGGVTLRLRWEQEEENLSYNPRLFFEVQDTGCGITPQEIGLLFE 859 Query: 741 RF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 F + R ++G GLGL+I ++ L GG +++SS+ Sbjct: 860 AFEQTEIGRKSQQGTGLGLAISRKYVQLMGGDITVSST 897 >gi|182415386|ref|YP_001820452.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842600|gb|ACB76852.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 735 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 11/254 (4%) Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604 + +++R + L E+ A++ K+ F+ +S+ELR+PLT ++ +L+ L Sbjct: 330 IAEALRWQNELAERARETEAANQAKDHFLAMLSHELRTPLTPVLAAAGVLEHDD--RLPQ 387 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 + + I + I LV+D+LDL ++ G ++ + + LL+E +A + Sbjct: 388 DVREDLRMIRRNIGIQSRLVDDLLDLTKLERGKLEFEPQVLDIAALLHETALIVAPDLDA 447 Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFI 720 + +I++ G V D RL Q+F +L NA FS + + L+ R G I Sbjct: 448 KDQQIEMDLFAAEGQRVEGDGPRLQQVFWNLLKNANKFSPAKTRIALRTRRAEGAPARLI 507 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISS 776 V + G I +F F A G+RR G+GLGLSI + ++LHGG ++++S Sbjct: 508 VDVVDKGMGIDPTHLDRIFRPFEQVATNGKRRSGESGLGLGLSIARAIVDLHGGKIAVAS 567 Query: 777 SDEGV-TTINCRIP 789 G T + +P Sbjct: 568 EGLGCGATFSVELP 581 >gi|78222974|ref|YP_384721.1| histidine kinase [Geobacter metallireducens GS-15] gi|78194229|gb|ABB31996.1| histidine kinase [Geobacter metallireducens GS-15] Length = 462 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 12/236 (5%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ER L + A K + VS+E+RS + + G +LL+ + L+ KQ++Y+ Sbjct: 72 ERDLKRAKVSAEAACHSKEDLLALVSHEIRSQIQMLTGAVELLRET---PLDKKQTEYLN 128 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + + LL+LVND+LD + +DAG + L+ +LL Q IA + + ++ Sbjct: 129 AFNHAGEFLLSLVNDLLDNSRLDAGRIHLDQIEFPFRELLERTAQLIAWQAGRKGLELEY 188 Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVK 724 +S V D +RL Q+ + NA+ F+ +G +I A IF+++ Sbjct: 189 HLSPDIPAQLVGDPKRLQQVILNLAGNAIKFTEQGKIIITVEPEASSLASQEMQLIFTIQ 248 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778 + G IP D + +F R+ + R G GLGL+I + + L GG + ++S + Sbjct: 249 DTGIGIPGDKLEEIFERYAQASPATFRTYGGTGLGLNIAKRLVGLMGGTIRVTSKE 304 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ Sbjct: 646 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 702 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 SL ++Q Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A Sbjct: 703 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 762 Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718 K E + + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 763 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 820 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 F V++ G I +D + +F+ F R+ G GLGLSI + +++ GG Sbjct: 821 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 880 Query: 772 VSISS 776 + + S Sbjct: 881 MQVQS 885 >gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437] Length = 595 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621 K D + FV +VS+ELR+PLT I + + L G++ + S+++ + + Sbjct: 358 KLDRQRKEFVANVSHELRTPLTTIKSYLEALDEG--GAMEEPELASRFMRVTRQEAERMT 415 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L++D+L L+ +DA ++ + + L +L + A + + I ++ + L Sbjct: 416 RLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPRVY 475 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 ADR ++ Q+ +LSNA+ ++ +G + L A + + ++ +V + G IP+ + +F Sbjct: 476 ADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDLERIFE 535 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 RF V A G GLGLSI + HGG + + S+ TT+ +P E Sbjct: 536 RFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLPPCE 589 >gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum H04402 065] Length = 522 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++K + ++ FV +VS+EL++PLT+I GF++ LK + ++++ I+ + L Sbjct: 293 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 349 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDIL L+ ++ +L I LN+L+ +V + + NIRI ++ + K+ + Sbjct: 350 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 408 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 ++ + Q+ ++ NA+ ++ V + +D G+ +F V++ G I E+ +F R Sbjct: 409 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 468 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V A G GLGL+IV+ + G + + S + T +IP Sbjct: 469 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIP 518 >gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 1640 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 12/220 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A ++K++F+ ++S+E+R+P+ I+G T L+ L L +KQ Y+ I++S+ LL ++ Sbjct: 858 AVQVKSAFLANMSHEIRTPMNAIMGMTHLVL---LTDLTAKQRNYLYKINSSAKWLLGIL 914 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683 NDILD + ++AG +KL Y+ L ++ + ++ ++ + ++ D + + + D Sbjct: 915 NDILDFSKLEAGKLKLEYTEFRLETVMQYLDDVTSSLLNSKQLALRFEVDPDVPTTLIGD 974 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738 RL Q+ +LSNA+ F+ KGS V L+ D FSV + G + E+ + Sbjct: 975 PLRLGQVLLNLLSNAIKFTEKGS-VTLQVQLQASDAKEACLCFSVIDTGIGLNEEQQSHL 1033 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F F R+ G GLGLSI + + GG ++I S Sbjct: 1034 FAAFNQADDSTTRKYGGTGLGLSISKELVEAMGGTINIES 1073 >gi|302544743|ref|ZP_07297085.1| LOW QUALITY PROTEIN: signal transduction histidine-protein kinase afsQ2 [Streptomyces hygroscopicus ATCC 53653] gi|302462361|gb|EFL25454.1| LOW QUALITY PROTEIN: signal transduction histidine-protein kinase afsQ2 [Streptomyces himastatinicus ATCC 53653] Length = 339 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 14/243 (5%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 RA L ++ L + FV +S+ELR+PLT I T++L+ + +L+ + Sbjct: 69 RAAERLQKRVAELSAREASSRRFVADMSHELRTPLTAITAVTEVLE-EEADALDPMIAPA 127 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ + + + L +LV +++++ DAG +L + D+ ++V I + + + + Sbjct: 128 VQLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVEL 184 Query: 670 KVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727 D G VA D +RL I + ++ NA+ GS V + + D + V+++G Sbjct: 185 ----DAARG-IVARLDPRRLDVILANLIGNALKHG--GSPVRVSVLPEGEDLLIKVRDHG 237 Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IPED+ VF+RF ++A R + G GLGLSI ++HGG +S ++S EG Sbjct: 238 PGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGDISAANSPEGGAVFTL 297 Query: 787 RIP 789 R+P Sbjct: 298 RLP 300 >gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14] Length = 499 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E L E + ++D +K +F+ ++S+E+R+PL I+GF+D++ ++ +++ +V Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIK 670 IS +S L+ L++D+LDL+ +++ +K ++ L L+ ++++ A K + E IR Sbjct: 316 LISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKEQAMKPISEIEIRAS 375 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI-FSVKNNGS 728 ++ + D RL Q+ ++NA F+ KG A N D + V++ GS Sbjct: 376 FPNEDVYIN--TDATRLKQVVCNFINNARKFTEKGYIHFGYAVDPVNADSVNIFVEDTGS 433 Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 IP++ K +F+RF Q G GLGLSI ++ + G +S+ S Sbjct: 434 GIPQECQKEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVES 479 >gi|251794821|ref|YP_003009552.1| histidine kinase [Paenibacillus sp. JDR-2] gi|247542447|gb|ACS99465.1| histidine kinase [Paenibacillus sp. JDR-2] Length = 460 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620 +L + + ++ FV +VS+E++SPLT+I GF + L++ L +++YV I S+ L Sbjct: 228 SLSQLETMRRDFVSNVSHEIQSPLTSIGGFAEALRSEDL--TEGDRNRYVGIIKQESSRL 285 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680 L ++L LA++D+ T L+ L +V S + ++++ + + Sbjct: 286 SRLSENLLKLASLDSEHHPYKPVTYRLDRQLRDVVLSCEPTWLAKRLTVELLMEETV--I 343 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD +L Q++ +L+N++ F+ + + + + NG + + + GS IPE+ VF Sbjct: 344 KADEDQLSQVWINLLTNSIKFTPEEGKISFQLSEKNGYAVVRISDTGSGIPEEERDRVFE 403 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF + + G GLGLSIV+ I++HGG + I +++G + R+P Sbjct: 404 RFYKIDPSRDRSEGGSGLGLSIVKKIIDIHGGTIEIEDAEQGAVFV-VRLP 453 >gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297] gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297] Length = 773 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 13/246 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 + AE ALT + A+R K F+ +VS+ELR+PL I G DLL S S + + Sbjct: 388 IAAEEALTIADNAVRA----KERFLANVSHELRTPLNAIQGSVDLLSHS---SQDESLKE 440 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 ++ I SS+ LL L+NDILDLA ++A ++ ++ L+ + ++ SI + NN + Sbjct: 441 PIDMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPFNLHGSIQQIC-SIYSNSLANNAQ 499 Query: 669 IK---VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 + IS V D +RL Q+ + +LSNA F+ KG +D + SV++ Sbjct: 500 TRFELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTEKGKVTCRLTLKDTHTLMISVQD 559 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 G I D ++F F R+ G GLGL I I GG + S +T Sbjct: 560 TGIGIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRISSKIIEQMGGEIWAESETGQGST 619 Query: 784 INCRIP 789 +P Sbjct: 620 FTFTLP 625 >gi|148545406|ref|YP_001265508.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida F1] gi|148509464|gb|ABQ76324.1| Alginate biosynthesis sensor protein KinB [Pseudomonas putida F1] Length = 593 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 13/266 (4%) Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583 +L YS+ P+ + Q +L V V V +RA + +++ FV S+ELR+P Sbjct: 339 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 388 Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643 +T + LL+ ++++ +E I L L+ND+L+ + +G+ KL + Sbjct: 389 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 448 Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703 ++DLL + A I + D L AD +L ++ +L NA+ ++ Sbjct: 449 PCAIDDLLEHAQLRFAEHAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 508 Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763 G + L A R I SV++NG I +F FV + + G GLGL++ + Sbjct: 509 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 566 Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789 + LHGG + + S T +P Sbjct: 567 IVQLHGGRMGVFSRPGQGTQFYMALP 592 >gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126] Length = 1023 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608 V + L E + RKA +K+SF+ ++S+E+R+PL ++G LLK LN K Q Sbjct: 494 VSRTKELVEATQEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKCQP---LNEKAEQ 550 Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668 V + S L L+ND+LDL+ ++AG + +N L+ + + A K ++ Sbjct: 551 LVSMMEISCNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQ 610 Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722 + V + G + +D R+ QI S +L+NA+ F+ +G + L+A+ + D FS Sbjct: 611 LLVDTTGLPPVEINSDPHRINQILSNLLNNAIKFTEEGH-IKLQASLSDVDAGTQQLHFS 669 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V + G I ++ +F F + Q G GLGLSI + L GG ++ +S Sbjct: 670 VCDTGVGIAQENQPKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGGDITFNS 725 >gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC 43255] gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 441 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +S G+ +G I L N + + K+E N+L G +I + E + Sbjct: 95 ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILQ 147 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558 I S D+E ++ D V + + P L N ++ + VN+ D +T+K Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 K + +++ FV +VS+EL++PLT+I GF + LK+++ +N++ ++++E I + S Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251 Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L L++DIL L+ V D +M+ +V+ D+ EV + E NI + D Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K S ++++ + Q+F ++ NA+ ++ V + +D + V +NG IP++ Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F RF V A G GLGL+I + + G + + S Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 10/228 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ F+ ++S+E+R+P+ I+G + LL+ + LN +Q +E + + LL L+ND+L Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLLERT---GLNERQQNLLEVLQRNGQTLLTLINDVL 1171 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 DL+ ++A + ++ L LL + A E + I + D L + V D RL Sbjct: 1172 DLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFRL 1231 Query: 688 LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 QI +L NA+ F++KGS + ++ A++ FSV + G I D +++F F+ Sbjct: 1232 QQILHNLLGNAVKFTAKGSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPFI 1291 Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 N+ Q G GLGL+I + L G + + S +T +P Sbjct: 1292 QADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVP 1339 >gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1946 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 30/251 (11%) Query: 553 RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 + L E+N A+ KA +I K+ F+ +S+E+R+P+ +IG T LL ++L + + Sbjct: 1233 QQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQL---SHE 1289 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q+++ E I S LL ++NDILD + +++G ++L L + E + K E Sbjct: 1290 QAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKAAEK 1349 Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR--------- 714 I + + D + + D RL QI +LSNA+ F+ +G TV + + R Sbjct: 1350 AIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALKFTHQGEVTVSVSSKRVSPQSLEQL 1409 Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765 + +F+VK+ G IP D +F F V ++ G GLGL I + Sbjct: 1410 SHRTNKEQQYEILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLS 1469 Query: 766 NLHGGHVSISS 776 + GG + + S Sbjct: 1470 EMMGGRIWVES 1480 >gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 437 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 14/251 (5%) Query: 547 DSVRAERA----------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 + RAER+ L + E + + K+ F+ +S+ELR+PL ++GF +L+ Sbjct: 170 ERARAERSAIELRRINLELQQAREEAERGNRAKSQFLSSMSHELRTPLNAVLGFAQILEQ 229 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 L+ +Q+ YV+ I LL+L++DILDL+ V+AG ++L + L+++ + Sbjct: 230 DPREPLSERQAGYVDQILGGGRHLLSLIDDILDLSRVEAGRVELKPEWVAPGLLVDQCAE 289 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 + + + + V +++ S D +R+ Q+ + SNA+ ++ V ++ Sbjct: 290 LLGPMATDAGVHLSVYVAEAVPASIWVDPRRIRQVLFNLASNAVKYNRPDGRVEVEVEAP 349 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773 D I F V++ G I E+ + VF F + G G+GL + + GG + Sbjct: 350 APDRIRFRVRDTGIGIREERQREVFYPFNRLGLESSEVEGTGIGLVVTRRLVEQMGGEIG 409 Query: 774 ISSSDEGVTTI 784 SS+ GV ++ Sbjct: 410 FSSAP-GVGSV 419 >gi|298246973|ref|ZP_06970778.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549632|gb|EFH83498.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 796 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N A ++ ++ K+ F+ S+ELR PLT + T LL+ + + + Sbjct: 563 NSARKELEQRKDDFISMASHELRGPLTALKLQTTLLRRQLAKQGTQASAPALSSMETQIN 622 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 + LV ++LD++ + AG ++ T+ L+ LL E+ +++ + + ++ G G Sbjct: 623 KVTRLVEELLDVSKIQAGRLEYVQETVDLDALLREITETLQQSSPSHTLVVR--GTGGTG 680 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 + DR RL Q+F+ ++SNA+ +S TV + + V ++G IP + + Sbjct: 681 -LIGDRDRLGQVFTNLISNAIKYSPNAETVEMDLSASEDAVTVCVCDHGLGIPREQRDKI 739 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 F RF VS ++ G+G+GL IV + HGG +++ S +T +P K Sbjct: 740 FERFYRVSGPNQKAIPGLGMGLYIVAEIVRHHGGSITVESEVGKGSTFQVTLPMK 794 >gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 833 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 30/254 (11%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 R L+ + +A + K+ F+ VS+ELR+PLT I+G T LL+T+ SL S Q + +E Sbjct: 180 RKLSAATKVAEEASQAKSLFLASVSHELRTPLTAIVGMTGLLRTT---SLASDQREMIET 236 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IK 670 + ++ L +L++ +LDL+ ++AG M + L LL + ++ + + E + I Sbjct: 237 VEVATRSLRSLIDGLLDLSRIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDIH 296 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNN 726 V LG V RQ L + ++ NA+ F+ +G + A D + V + Sbjct: 297 VTPRTPLG-LVGSRQHLHEALVNLVGNAVKFTQQGGVTLAVDAEPAEDGRLSLVIEVSDT 355 Query: 727 GSSI-PEDMCK----------SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775 G I P D + S+ NRF G GLGL+I + L GG +S+ Sbjct: 356 GIGIAPGDQERIFEDFTQADASILNRF---------GGTGLGLAITRRLVALMGGTISVD 406 Query: 776 SSDEGVTTINCRIP 789 S+ +T +P Sbjct: 407 SAPGKGSTFRFHVP 420 >gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 576 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 16/252 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + L + A +A +K+ F+ ++ELR+PL IIGF L+ + + +Q +++E Sbjct: 317 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLV-LDGMADDSQEQQEFLEE 375 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 S+ LLNL+NDILD+A ++AG M L ++ L +L + + + Sbjct: 376 AHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSK 435 Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA---RDN---GDFI 720 L V + QRLLQ+ ++SNA+ F+ G + I+K RD G Sbjct: 436 YPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIK 495 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 V + G + + +F +FV +H G GLGL+I + + GG V S Sbjct: 496 VRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 555 Query: 779 EGV-TTINCRIP 789 EG+ +T+ +P Sbjct: 556 EGLGSTVTFTVP 567 >gi|153005312|ref|YP_001379637.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152028885|gb|ABS26653.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 459 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+ FV VS+ELR+PL ++G+ LL+ KL + + S+ +E I S+ +V+D+L Sbjct: 86 KDEFVATVSHELRTPLNAVLGWARLLRLGKLDA--AAASRGIETIERSAQAQAQIVDDLL 143 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 D + + G ++L+ + L ++ +++ +I + + + G D RL Sbjct: 144 DFSRIVRGQLRLDVRPVELVPVVEAALEAVRPAAAARSISVAAVLVPRAGPVAGDPGRLQ 203 Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748 Q+ +LSNA+ F+ G V ++ AR+ + V++ G+ I ED +F RF Sbjct: 204 QVVWNLLSNAIKFTPPGGRVEVRLAREGDEVTIRVRDTGAGIAEDFLPHLFERFRQADSS 263 Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R G+GLGL++V + HGG VS +S G R+P Sbjct: 264 STRVHGGLGLGLALVRHLVEAHGGAVSATSDGPGRGAAFTVRLP 307 >gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 422 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 160/354 (45%), Gaps = 39/354 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 ++++++ + + DG I +N A R + + PG R + Y+ ++ Sbjct: 80 LNNITDPIIIVRGDGVITFANIAGRDITR-------PGIEGRKVYDVVENYFL----LEM 128 Query: 500 FAAIITSFDDERKSLQ-GTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERAL 555 F + E +Q G + + ++ Y ++P+ Q ++ V E+ L Sbjct: 129 FEKAL-----ETGEIQSGDVVMQTNGETRYYDAKVVPIKFDQESERYIIVLHDTTKEKQL 183 Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615 D+++ F+ +VS+ELR+PLT+I G+ + L L + +++ I + Sbjct: 184 ----------DKLRREFISNVSHELRTPLTSIHGYAEALLDDDLSN-KELVRKFLGVIES 232 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S + L+ND+LDL +++G K N+S + + ++ V + + + + + Sbjct: 233 ESARMTRLINDLLDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCEC 292 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731 K + D RL+Q+ ++ NA+ ++S T V +K +F V++ G IP Sbjct: 293 K-STVYGDFDRLVQLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGIP 351 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 ED K +F RF V A + G GLGLSIV+ + H +S S EG T Sbjct: 352 EDAQKRLFERFYRVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTT 405 >gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 672 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 117/220 (53%), Gaps = 10/220 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A A+ K+SF+ +S+E+R+P+ I+G D+L ++L + Q++YV+ + Sbjct: 280 QAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETEL---SEDQARYVDVFRTAGEN 336 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 LL +++DILDL+ ++AG + L + L ++L+ I TK + + + ++ ++ + Sbjct: 337 LLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGLGLSCVAAPEVPA 396 Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDM 734 + D RL Q+ +L NA+ F+ GS + A+RD+ + FS+ + G + D Sbjct: 397 RINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFSITDTGVGVSGDK 456 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 ++F F R+ G GLGL+I + + + GG + Sbjct: 457 LGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRI 496 >gi|289663371|ref|ZP_06484952.1| RpfC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 722 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 17/231 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 ALT R A+E K+ F+ ++S+E R+PL + G +LL +KL +++QS+Y++ I Sbjct: 175 ALTRALNDARHANEAKSKFLANMSHEFRTPLNGLSGTAELLAVTKL---DAEQSEYLKTI 231 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKV 671 AS+ L +LV ++LD++ ++AG ++L + +L LL+ V + + I +++V Sbjct: 232 QASALNLRSLVEEVLDISAIEAGKVRLIRTHFLLASLLDSVALILRPQATNKGIGYQVEV 291 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI---FSVKN 725 +D + V D L Q+ ++ NA+ F+ +GS V LK +R GD I F V++ Sbjct: 292 AADVP-ANLVGDAGHLSQVLLNLIGNAVKFTDEGS-VDLKVSRVASLPGDRICVRFEVRD 349 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 G +P M VF+ F G R G GLG +I + + GG + Sbjct: 350 TGIGVPVAMQSRVFDAF-QQGDMGLNRHYEGTGLGTTIAKGLVESMGGRIG 399 >gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium] Length = 992 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 16/253 (6%) Query: 537 QTMLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 Q L F +V + R E L E ++ K F+ +S+E+R+P+ ++G DL Sbjct: 412 QLQLIFQDVEKFIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMADL 471 Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 L+T L +Q YVE I S LL ++NDILD++ + AG + L L +++ Sbjct: 472 VLRTP----LTDQQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEVVQ 527 Query: 653 EVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---- 706 +V A ++ + I+ +G + D RL QI +L NA+ F+ +GS Sbjct: 528 DVIDMFAERVKTKGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIGLF 587 Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 +L+ + F V + G I D C+ +F F R+ G GLGL+I + Sbjct: 588 VEVLEERAWDVLLRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQKL 647 Query: 765 INLHGGHVSISSS 777 + + G +++ S+ Sbjct: 648 VGMMAGELTVEST 660 >gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 678 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 122/243 (50%), Gaps = 10/243 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 + V++T+ R E+ L + A +K+ F+ ++S+E+R+P+ IIG + LL ++ Sbjct: 21 SVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLDTR-- 78 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+ +Q ++ E + S+ LL ++NDILD + +++G + ++ L ++ + + Sbjct: 79 -LSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLALLGE 137 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG 717 + + I + G + D R+ QI + ++ NA+ F+ +G S + + N Sbjct: 138 RAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQETNT 197 Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F SV++ G + +D+ +F FV R+ G GLGL+I I + GG + Sbjct: 198 TLHFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIG 257 Query: 774 ISS 776 ++ Sbjct: 258 FTT 260 >gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2] Length = 1109 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 17/226 (7%) Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631 F+ ++S+E+R+P+ IIGF+DL+ K ++ +Q ++ ++ S+ LL+L+NDILD A Sbjct: 538 FLANMSHEIRTPMNAIIGFSDLMLAEK---MSPEQHGHLTTVNRSARSLLHLLNDILDSA 594 Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR-----QR 686 +D G + L+Y ++ + ++ V + + I ++V ++GS V + +R Sbjct: 595 KLDKGKLDLDYRDFIIREEVDTVISTFWLEAKSKRISLEV----QVGSEVREAYNGVPER 650 Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746 + Q+ + ++ NA+ F+ GS V+L+ + D+ F VK++G + + VF+ F Sbjct: 651 IRQVLNNLIGNAVKFTGDGS-VVLEVSSDSSFVYFKVKDSGIGMNSEQVNRVFDAFAQAD 709 Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 R+ G GLG +I + + L GG++ + S+ GV +T R+P Sbjct: 710 ASMSRKYGGTGLGTTISKQLVELMGGNIC-AQSELGVGSTFTFRLP 754 >gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ER-3] Length = 2346 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 15/229 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ +VS++LR+P+ +IG ++LLK + SL+ +Q YVE I + LL L+ Sbjct: 1835 AAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYVESIRVCADTLLTLI 1891 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VA 682 NDILD + ++AG MK++ + L + + EV +++ + ++ DG + + Sbjct: 1892 NDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMG 1951 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D RL QIF +LSN+ F+ KGS + D + V + G I + + Sbjct: 1952 DPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2011 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783 F F S A R G GLGLSI ++ I ++ GG + + S+EGV T Sbjct: 2012 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWL-QSEEGVGT 2058 >gi|254475552|ref|ZP_05088938.1| conserved hypothetical protein [Ruegeria sp. R11] gi|214029795|gb|EEB70630.1| conserved hypothetical protein [Ruegeria sp. R11] Length = 519 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/345 (21%), Positives = 149/345 (43%), Gaps = 15/345 (4%) Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263 + VW + G + W+N++Y + QK G + F E + + A K Sbjct: 162 YPVWLQSDDGAVTWSNLAYDD-------LSQKIRGRNVD-FSEPLFTDLDDPMASGKPER 213 Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAI 319 ++ + Y I G A+DV+ EI + + + L++ + Sbjct: 214 ISIPLPDSKKKLWYNISTTETESGWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGL 273 Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379 AIFD+NR L N ++L + FL++ P+ + LR +PE N+ +W+ + Sbjct: 274 AIFDRNRQLVLFNPVLIDLTALPANFLSSRPNMMTFFDRLRDQRMMPEPKNYSSWRHQMA 333 Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437 + +++ +++TW LP+G V +P G ++FE++T ++ L ++ + +++ Sbjct: 334 DLLEAASEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQ 393 Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497 +D + + +AVF DG + SN A+ LW+ + + I + + + W Sbjct: 394 SIMDQMDDAIAVFANDGSMTFSNAAYHELWQMDPDASFAKVTIMDSSRVWQNMCAATPAW 453 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 + D R ++L + + L + + N TM++F Sbjct: 454 GEIRDFVAG-GDGRTPWWANVQLRNGTPLVCKVSAIQNGATMVSF 497 >gi|254445827|ref|ZP_05059303.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260135|gb|EDY84443.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 567 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 20/246 (8%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + + K+ F+ ++S+E+R+P+ +IGF DLL +KL + +Q +Y+E I+ S + Sbjct: 165 EYAKAESDAKSDFLANMSHEIRTPMNAVIGFCDLLSNTKL---DEEQEEYLEAINHSGQL 221 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----ISDG 675 L+ L+ +LD + +++G + L + + +L EV+ + ++ E +I V +SD Sbjct: 222 LIKLIGQVLDYSKIESGHLHLESEELSFDQILLEVQAMMGVRLKETDIEFVVEKENLSDE 281 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSI 730 L V D R+ Q+ +L NA F+ GS V+ + D+ G V+ + G I Sbjct: 282 LL---VGDTTRVKQVLINLLGNAFKFTRDGSIVLKARSFDSHHLGHLCLQVRVEDTGIGI 338 Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG---VTTIN 785 D +S+F F R R G GLGL+I + G V + S+ G V Sbjct: 339 RADRLRSLFCPFAQAHMRIAREFGGSGLGLAICKRLCEAMHGDVWVESTKPGKGSVFVFE 398 Query: 786 CRIPSK 791 +P K Sbjct: 399 IHLPKK 404 >gi|323139543|ref|ZP_08074589.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395222|gb|EFX97777.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 523 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 170/379 (44%), Gaps = 50/379 (13%) Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL---------------WKTEENRLSPGTHIRN 482 + +DHL V +GR+ N A + L WK S H Sbjct: 27 QIMDHLPTAVYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVSWKLYRTDGSILPHDEC 86 Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542 A R + + G + AI+ D R ++ +ELL D++ ++I N Sbjct: 87 PVAVTLREHRKISGVE---AIVERPDGSRVWIEPHIELLFDAL--GNVIGAVN-----VL 136 Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI--------IGFTDLL 594 +++T+ R+E L + AD K+ F+ +++ELR+PL I + L Sbjct: 137 IDITERKRSENLLLD-------ADRRKDDFLALLAHELRNPLAPIHNAINVLMLEIATPL 189 Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654 K + +L S + V++ L+ LV+D+LD++ + G + L I L D + Sbjct: 190 KVERGMALLSMADRQVKH-------LIRLVDDLLDVSRITKGKIVLEKIKINLADAFHHA 242 Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 + ++ ++V + D R+ Q+F+ +L+NA F+ + + L+A R Sbjct: 243 IEMARPEIERGGHELRVQLPPEALEIEGDTVRIAQVFTNLLNNAAKFTKQPDILYLQAER 302 Query: 715 DNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 + + I +V++NG I PE++ K +F F Q RG+G+GL++V S + +HGG V+ Sbjct: 303 RDAEVIVAVRDNGVGIAPENLTK-IFEAFAQIDTGHQSRGLGIGLALVRSLVEMHGGTVA 361 Query: 774 ISSSD-EGVTTINCRIPSK 791 S + +T R+P K Sbjct: 362 AHSGGYQKGSTFVVRLPLK 380 >gi|291543616|emb|CBL16725.1| Signal transduction histidine kinase [Ruminococcus sp. 18P13] Length = 482 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LT++ +T A+ + NE RK SFV +VS+ELR+P+T I GF D + Sbjct: 227 LTYLAMTMGRMAD--FIDSNEKNRK------SFVSNVSHELRTPMTTISGFVDGILD--- 275 Query: 600 GSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 G++ +Q Q Y+ IS L LV+ +L+++ + G M+L + L LL Sbjct: 276 GTIPPEQQQGYLRRISGEVKRLSRLVSSMLNISKFEEGGMELKLVPVELTGLLISTLFMF 335 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718 K+ I++ + D AD+ + Q+F ++ NA+ F+ + + Sbjct: 336 EQKIEARQIQVCGLEDCPRAEVQADKDLMQQVFYNLIENAVKFTPRNGELTFSVMPQGEQ 395 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++N G + E+ +VFNRF + GVGLGLSIV I LH G++ + S Sbjct: 396 CQVVIRNTGEGLSEEELSNVFNRFYKTDESRSKDTTGVGLGLSIVSRIIRLHNGNIMVKS 455 Query: 777 SDEGVTTINCRIPSK 791 T +P K Sbjct: 456 VKGDYTEFVITLPVK 470 >gi|261253840|ref|ZP_05946413.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis CIP 102891] gi|260937231|gb|EEX93220.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis CIP 102891] Length = 783 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 19/251 (7%) Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E+L KA K +F+ +S+ELR+PL I+G + +L ++ + +Q + Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---MTQEQRSH 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L N+ NDI+D+ D ++L S + + + E++ A + +R Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSALNFEEFVAEMESISALMASQKGLRF 380 Query: 670 KV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVK 724 + +SD G V D RL Q+ ++SNAM F+ +G V+ ++ ++ I ++ Sbjct: 381 DLERLSDLPTGIEV-DATRLRQVLWNLISNAMKFTKEGGVVMTVSSEVIDEHAHIIMEIE 439 Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G IPE +F + S G G+GL++ + IN+ G +++ SS+EG Sbjct: 440 DSGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-SSEEGF 498 Query: 782 T---TINCRIP 789 T+ R+P Sbjct: 499 GSTFTVTIRVP 509 >gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1323 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 13/259 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT++V L A+ K+ F+ ++S+E+R+P+ +IG T LL S LN Sbjct: 661 DVTEAVVQREELARLAAEADDANRAKSQFLANMSHEIRTPINGVIGMTSLLLDSP--GLN 718 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 S+QS+ I +S LL L+NDILD + V+AG + L L D L+++ + + Sbjct: 719 SEQSKQARVIQSSGEALLALINDILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAG 778 Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718 E + +D ++ + D RL QI + NA+ F++ GS +L + D + Sbjct: 779 EKQLEFICKADNQVPDRLRGDPGRLRQILINLAGNAIKFTANGSVKVLVSLADRDEKTAL 838 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776 FSV + G I E+ + +F+ F R G GLGL+I + +NL G + + + Sbjct: 839 LRFSVIDTGIGISEEKKRLLFSEFTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGV-T 897 Query: 777 SDEGVTT---INCRIPSKE 792 S++G + R+P +E Sbjct: 898 SEKGSGSEFWFTARLPYEE 916 >gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] Length = 896 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N+ V S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721 D F D +R+ QI +LSNA F+ KGS + + + D+I Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S+ Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721 Query: 780 GVTTINCRIPS 790 +T IP+ Sbjct: 722 EGSTFTVYIPN 732 >gi|83814673|ref|YP_446726.1| sensory box sensor histidine kinase/response regulator [Salinibacter ruber DSM 13855] gi|83756067|gb|ABC44180.1| sensory box sensor histidine kinase/response regulator [Salinibacter ruber DSM 13855] Length = 1443 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618 RKA +K++F+ ++S+E+R+PLT+IIGF ++L +++G+L++ + Q I Sbjct: 1202 RKAARLKSAFLANMSHEIRTPLTSIIGFAEVLG-AEVGALDASAAGSLEQKAHLIEQGGK 1260 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL+ + +L+L+ ++AG M+L+ + L D + + K + +R++V + Sbjct: 1261 RLLDTLEGVLNLSKLEAGQMELDRRPVDLADRARRTAEELKPKATDKGVRLQVETGTGPV 1320 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 AD + + +LSNA+ ++++G V ++ R++G + V++ G + + K + Sbjct: 1321 RARADEGGVQIVVQNLLSNAIKYTNEGGRVRVRTYREDGAAVLEVEDTGIGMEPEAAKEL 1380 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792 F F + R+ G G+GL++ + G + + + + R+P E Sbjct: 1381 FEPFRQASEGIGRKYEGSGVGLAVTQKATEEMDGDIEVDTEKGDGSRFVVRLPRAE 1436 >gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 441 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 5/236 (2%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613 L E E LR+AD ++ V +VS++LRSP+ +I G+ + + K G L ++ Q YV+ Sbjct: 196 LQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHM-KDGDLPPQERQRYVKTA 254 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 ++ L LVN++ +L+ ++ ++ + +L+ +V + E + ++ Sbjct: 255 LRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLRADL 314 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + AD + + S ++ NA+ ++ +G V ++ + G+ +V + G IPED Sbjct: 315 PERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGIPED 374 Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786 +F RF V + R G GLGL+I ++ + LHG + + S+ EG + C Sbjct: 375 DLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFC 430 >gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 661 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 129/257 (50%), Gaps = 9/257 (3%) Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 Q + +++ AE AL A A +K+ F+ ++S+ELR+PL I+G++++++ Sbjct: 243 QILGASTDISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMED 302 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 ++ S+ + V+ I + LL L+ DIL+ + +++G ++++ + L + Sbjct: 303 H---AVTSESLEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFE 359 Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714 S + +R V +SD + D + QI ++++NA+ F+ G V ++ A Sbjct: 360 SFRELADDKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAGEIGVAVRVA- 418 Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +G+ +V++ G IP +M S++ F + RR G GLGL+I + + GG + Sbjct: 419 -DGNLELNVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDI 477 Query: 773 SISSSDEGVTTINCRIP 789 S+ S + R+P Sbjct: 478 SVRSQAGAGSQFTVRLP 494 >gi|291006677|ref|ZP_06564650.1| two component system histidine kinase [Saccharopolyspora erythraea NRRL 2338] Length = 517 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E LR D + FV V+++LR+P +++ D L+ +S+ V +S Sbjct: 278 LGDSIEELRVKDRQQQRFVADVAHDLRTPTASLVAAADSLEHPD----PESRSRAVALVS 333 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 + L LV+D+L+++ D+G +L + L +L V+++I + ++R+ +D Sbjct: 334 TQARRLARLVDDLLEISRFDSGAAELRPEGVDLREL---VREAIELVTCDADVRLDATAD 390 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L V D +RL I +L+NA+ ++ TV + D G + V ++G +PE++ Sbjct: 391 TTL---VGDPRRLHTIVCNLLANAVHHGAEPVTVAIDGT-DPGQVVLRVADSGPGVPEEL 446 Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785 + +F+RFV + R G GLG++I + +HGG +++ + V T+ Sbjct: 447 TRILFDRFVRGDRARSATDGSGLGMAIAQQNALVHGGRITVHNDGGAVFTLT 498 >gi|229150109|ref|ZP_04278332.1| hypothetical protein bcere0011_16650 [Bacillus cereus m1550] gi|228633408|gb|EEK90014.1| hypothetical protein bcere0011_16650 [Bacillus cereus m1550] Length = 276 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 139/274 (50%), Gaps = 14/274 (5%) Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580 +SD E I L N + NV R ++L E E +K+ E+KN + ++S++L Sbjct: 4 ISDGNFEIHIPILKNDEIGELAANVN---RMAKSLKESIENEKKSQEMKNEMISNISHDL 60 Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640 R+P+T++IG+ DLL +KL S + QYV + S L N V+D+L+ ++ ++L Sbjct: 61 RTPVTSLIGYADLL-GNKLHSNGEECEQYVSILKRKSYELKNQVDDLLEYCQINYREIEL 119 Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700 + + + L+ ++ ++ + N+ + SD L V D ++++F ++ N++ Sbjct: 120 HKDEVDMKALIEQIMIDFVPQLDDANMSFYIKSDEVLHVEV-DVTLIVRLFENVIGNSIM 178 Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVG 755 + G + ++ + +KN G IP++ +F +F ++H G G G Sbjct: 179 YGRDGKGIAIEIFNKTMNVEVEIKNFGQCIPKEDLPYIFEKFYRSEKSRSSHTG---GKG 235 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +GL+I +S LH G +++ S+D+ T ++P Sbjct: 236 IGLAISKSIAELHQGDITVRSNDKE-TVFTVKLP 268 >gi|187777044|ref|ZP_02993517.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC 15579] gi|187773972|gb|EDU37774.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC 15579] Length = 464 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K D++KN F+ VS+ELR+PLT+I G++ L ++++ K ++ I S L + Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWSITLNSNEVDKEVLKDG--LKIIEDESERLSGM 296 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V ++LD + +G M LN I + ++++ V++ + + N I K KL + D Sbjct: 297 VEELLDFSKFVSGKMNLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 + R+ Q+ +L NA F+ +G V L + VK+ G I ++ V +F Sbjct: 357 KNRIKQVLINLLDNAFKFTPEGGLVELNIKYEEEYITIFVKDTGVGISKEDLPRVKEKFY 416 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + G+ + G+GLSI + + LH G + I S + TTI+ ++P Sbjct: 417 K-GNSGKSKN-GIGLSICDEIVKLHNGVLHIESEENKGTTISVKLP 460 >gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 778 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G I +D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 431 LHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490 Query: 776 S 776 S Sbjct: 491 S 491 >gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 955 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 31/255 (12%) Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 R E+ E EA AD K+ F+ ++S+ELR+PL I+G+ +LK S+ SL + Sbjct: 448 RVEQRTAELKEATVAADAANRAKSDFLANMSHELRTPLNGILGYAQILKRSR--SLGEQD 505 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 + VE I+ S + LL L+ND+LDLA +++ M+++ + LN + + + Sbjct: 506 LRGVEVIAESGSHLLTLINDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKG 565 Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------- 718 I L V AD++RL QI +L NA+ F+ GS A G Sbjct: 566 IAFVFKPGPALPEGVRADQRRLRQILLNLLGNAIKFTENGSVTFTVAEVPGGSRGARKDL 625 Query: 719 ---------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761 F +++ G+ I + +F F V + R R G GLGL+I Sbjct: 626 PEDGASPESRTKTHRIRFEIEDTGTGIGAEHLDQIFLPFKQVGDKSR-HREGTGLGLAIS 684 Query: 762 ESFINLHGGHVSISS 776 + + L GG + + S Sbjct: 685 QRIVTLMGGSIQVRS 699 >gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ATCC 18188] Length = 2401 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 15/229 (6%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ +VS++LR+P+ +IG ++LLK + SL+ +Q YVE I + LL L+ Sbjct: 1890 AAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYVESIRVCADTLLTLI 1946 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VA 682 NDILD + ++AG MK++ + L + + EV +++ + ++ DG + + Sbjct: 1947 NDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMG 2006 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738 D RL QIF +LSN+ F+ KGS + D + V + G I + + Sbjct: 2007 DPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2066 Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783 F F S A R G GLGLSI ++ I ++ GG + + S+EGV T Sbjct: 2067 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWL-QSEEGVGT 2113 >gi|309791767|ref|ZP_07686255.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226173|gb|EFO79913.1| GAF sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 1216 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 172/375 (45%), Gaps = 47/375 (12%) Query: 445 EGVAVFGPDGRIKLSNPAFRSL-----WK--TEENRLSPGTHIRNIAA--TCSRYYNESD 495 EG+ + G + ++N AFR L W E+ L+ G I + + + Y SD Sbjct: 856 EGMLLVDEHGMVLVANDAFRELADVLRWPDAPEQTELA-GQLIYTVLSRWQAAHIYPSSD 914 Query: 496 GWDLFAAIITSFDDERKSLQGTL-ELLSDSV-LEYSIIP-LPNA-------------QTM 539 L A + D ++ L G L + +D + +E+ ++P LP + Sbjct: 915 LDHLCACLTQVADGRQRFLHGQLIAIATDGIAIEWGVLPALPEGSHDLNHERLDARWPIL 974 Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 LTF ++TD+++AER ++ + ++LRSPLT+I D++ Sbjct: 975 LTFRDITDAIQAER--------------LRQDLTSMMVHDLRSPLTSITTSIDMIFRGTA 1020 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 G + S Q + + +S+ LL++VN +LD++ +++ M L+ + L ++ + + Sbjct: 1021 GEVTSLQREILTIAFSSTQHLLDMVNLLLDISRLESRQMPLDCMAVDLYEVAEAAIERMT 1080 Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG 717 + ++RI + SDG+ ADR+ ++++ +L NA+ FS V+ L+ + Sbjct: 1081 MIAQKQHVRINLQSDGEFLYAYADREMIMRVLQNLLDNAIKFSPANQQVVLSLQVLPEQN 1140 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 +V++ G+ + + +F +F G RR G GLGL+ + + H G + + Sbjct: 1141 LVRVAVRDFGAGLKAMDKEKIFTKF---GQVGNRRSSGSGLGLTFCKLVVEAHAGTIDVE 1197 Query: 776 SSDEGVTTINCRIPS 790 S +T +P+ Sbjct: 1198 SVPGQGSTFFFTLPA 1212 >gi|229030925|ref|ZP_04186944.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271] gi|228730419|gb|EEL81380.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271] Length = 448 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +++++ DE++ FV +VS+E +SPL++I GF+ L++ ++ +++ Y++ I S Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEEMSV--EERNHYLQIIEGESKR 277 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 + +L +L LA++D L L + +V + K E +I ++ D + Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 D L Q++S I +N++ FS+ G T+ + S+ +NG + + +F Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEREEMDRIF 395 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +RF V A G GLGLSIV+ + LH G+VS+ S+ TT+ +P Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447 >gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 1325 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 128/255 (50%), Gaps = 10/255 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 ++T R E L A+ K+ F+ VS+E+R+PL IIGF++++ + G + Sbjct: 1069 DITQWKRTEEELRTAKRDAETANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGPIG 1128 Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 S + Y+EY I S +L++VND+LD++ ++AG + + ++ + LND L E + Sbjct: 1129 SPR--YLEYAHDIGNSGKHVLDIVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQP 1186 Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719 + + I+ + VAD++ + QI +LSNA+ ++ G +++ + +G+ Sbjct: 1187 MANSQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNV 1246 Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SS 776 + +++ G + + F V R + G GLGL + ++ + + I S+ Sbjct: 1247 VIRIRDTGIGMNRKELEQAMKPFGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSA 1306 Query: 777 SDEGVTTINCRIPSK 791 + EG T ++ P + Sbjct: 1307 AGEG-TLVSIAFPPQ 1320 >gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium BAL199] gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium BAL199] Length = 507 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 43/370 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAATCSRYYNESDGW 497 I+ + + + + P GR+ L+N R + + T IR+ I AT + G Sbjct: 153 IESIPDPLLLIDPRGRVALANSEARRQFGKQIVGRDLSTVIRHPGILATVRQVLAGEPGG 212 Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALT 556 D+ A L +E + + +E + P P+ A ++ FV+++ Sbjct: 213 DVEIA-----------LAAPVERVFNVRIEALMEPEPDGASALMLFVDLS---------- 251 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 A+R+ ++++ FV +VS+ELR+PL ++GF + L+ ++ +++E + Sbjct: 252 ----AIRRTEQMRVDFVANVSHELRTPLATLLGFIETLQGPARDDAEARD-RFLEIMRVQ 306 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 + LV D+L L+ ++ K I L +LN VK ++ + ++R+ + D Sbjct: 307 GNRMSRLVQDLLSLSRIEISEHKPPSERIDLEPMLNSVKATLDLEARRKDMRVGLEVDAT 366 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNGDFI-FSVK 724 L V L Q+ +L NA+ + G+ + + A R +G + +V+ Sbjct: 367 LPQVVGAADELTQVVQNLLDNAIKYGKPGTEITVAARRADRVPASYPGGPSGKAVAIAVR 426 Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782 + G IP + + RF V A G GLGL+IV+ ++ H G ++I S+ + Sbjct: 427 DRGDGIPAEHIPRLTERFYRVDAARSRDLGGTGLGLAIVKHIVSRHRGTLTIHSTPGEGS 486 Query: 783 TINCRIPSKE 792 +P E Sbjct: 487 VFTVYVPVGE 496 >gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 2010 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 20/262 (7%) Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605 T+ +A +AL EK + L + K+ F+ ++S+ELR+PL +++ +D L + G+L+++ Sbjct: 1299 TEVEQARQALEEKAKQLALTSKYKSEFLANMSHELRTPLNSLLILSDQLCKNSEGNLSTR 1358 Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 Q ++ I +S LL L+NDILDL+ +++G + ++++ L DL + V+++ Sbjct: 1359 QIEFSRTIHSSGNELLMLINDILDLSKIESGTVAMDFAEHRLADLTSYVERTFRHVAEAR 1418 Query: 666 NIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---- 719 N+ VI G S D +RL QI +LSNA F+ +G V L +G + Sbjct: 1419 NVDF-VIELGTHLPASIRTDIKRLQQILKNLLSNAFKFTHRGH-VTLSVEEVSGGWSADN 1476 Query: 720 ----------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767 FSV + G I D + +F F R+ G GLGL+I L Sbjct: 1477 ERLHSAPACIAFSVSDTGIGISADKQQIIFEAFQQADGSTSRKYGGTGLGLAISRELSKL 1536 Query: 768 HGGHVSISSSDEGVTTINCRIP 789 GG + + SS +T +P Sbjct: 1537 LGGEIRLISSPNKGSTFTLYLP 1558 >gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 766 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 10/229 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + + A K+ F+ +S+E+R+PL ++G +LL + L N +Q + + + Sbjct: 363 LQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHL---NFEQKELLISLQ 419 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ LL+++N+ILD + ++G M+L +L+DL+ EV+ I+T + N++ Sbjct: 420 SAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPP 479 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD--FIFSVKNNGSS 729 V D RL Q+ +L NA+ F+ +G+ TV + G F VK+ G Sbjct: 480 EHDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIG 539 Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I ++ K VF+ F RR G GLGLSI + + L GG + S Sbjct: 540 IAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCES 588 >gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 845 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +AD +K V VS+ELR+PL++I GFT+L+ ++ ++ KQ +Y+ I + L NL Sbjct: 614 EADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAI--KQQKYLSTIHNETERLSNL 671 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 V D LD+ + +G + + + L ++++V ++I++ ++S + + + D Sbjct: 672 VTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHLLSVER-PAIIGD 730 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 R+ Q+ + +++NA+ +S G V + + D + + ++G IP+ +F++F Sbjct: 731 ETRIKQLLNNLVNNAIKYSPDGGQVDITVSTDQENATIQITDHGIGIPQYAFAHLFDKFY 790 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + RR G GLGLSI + + H G + + S+ +T +P Sbjct: 791 RVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALP 838 >gi|320333504|ref|YP_004170215.1| integral membrane sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] gi|319754793|gb|ADV66550.1| integral membrane sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] Length = 418 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 6/233 (2%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +AL + + + + + +++ELR+PL + D L L + + +S + Sbjct: 179 DALERLEGERRNMIADIAHELRTPLAVMQARLDALADGVLPMTPGE----IGVLSQQVEL 234 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LV D+ L+ +A + L+ +T DL+ V +S ++ H ++ Sbjct: 235 LTRLVGDLRTLSLAEAHQLSLDRTTFDARDLVAHVARSFESRAHARTQMLRTHLPTGPAP 294 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 ADR RL Q +L NA+ + V L + F+V+++G+ PED +F Sbjct: 295 LHADRDRLAQALGNLLDNALRHTPDAGVVQLSVRAEADAVTFAVRDSGAGFPEDAAPRLF 354 Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +RF V A G GLGL+IV++ LHGGHV+ + +G +PS Sbjct: 355 DRFYRVHGARDRATGGSGLGLAIVQAITALHGGHVTARNHPDGGAEFTLTLPS 407 >gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 762 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K+ + H+S+E+R+PL I G +LL+ G LN++Q V I + LL ++ Sbjct: 249 ANAAKSHLLAHMSHEIRTPLNVITGLAELLEQ---GELNAQQQHQVRRIQEAGESLLGIL 305 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 +DILDL+ ++AG + + L+ LL ++ + + + I G+F+ D Sbjct: 306 DDILDLSRIEAGKLGIARQPFELHKLLARIESFQGRCARAKGLSLDLDIPPLPAGAFLGD 365 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 RL Q+ + ++ NA+ F++ G + +A D F V++ G I + + +F Sbjct: 366 PLRLEQVLNNLIGNAIKFTNTGGITLRIQVREAETDTPYLHFEVEDTGIGIEPQILEDLF 425 Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782 FV +N R R G GLGL+I + + L GG + ++S G T Sbjct: 426 QPFVQADANLTRS-RGGTGLGLAISKHLVELMGGKIGAVSQPGRGST 471 >gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] Length = 1507 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 124/242 (51%), Gaps = 13/242 (5%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +V+D+ R + L E + +A+ K+ F+ ++S+E+R+P+ I+G T L L Sbjct: 1105 DVSDNKRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNR---DLP 1161 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 ++++ + S LL+++NDILDL+ ++AG + L L +++ + + Sbjct: 1162 DDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLAR 1221 Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-- 717 + + + I+ G + D+ RL QI + ++ NA+ F+ +G V L ++ G Sbjct: 1222 DKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKRGRVEVKVRLAEIQEPGRA 1281 Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 +F +K+ G I S+F +F S+AH Q G GLGL+I ++ + + GG + + Sbjct: 1282 SLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHV-QYGGTGLGLAISKALVEMMGGVIQV 1340 Query: 775 SS 776 S Sbjct: 1341 ES 1342 >gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 787 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 9/240 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 LTE E +A + K+ F+ +S+ELR+P+ ++G + ++ + + + ++V+ I Sbjct: 256 LTEATEKAERAAKAKSQFLATMSHELRTPMNGVLGISQIIASE---TKERETKEHVQVIL 312 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S L+ ++NDILD + V+ ++L + L +L V +I + E NI++ V ++ Sbjct: 313 DSGQHLMTILNDILDFSKVEENKLELEAAPFNLPQVLTPVCSAIQPLIEEKNIKLYVENE 372 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIP 731 F D R+ QI + NA+ F+S G V+++A D + S+ + G IP Sbjct: 373 VPENIEFNGDCARIRQILFNLAGNAVKFTSDGH-VLIRAELDEPRKRLLLSINDTGIGIP 431 Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 D +FN F R+ G GLGL+IV+ L GG V + S + T +P Sbjct: 432 ADKQDRIFNSFEQADTSTTRKFGGTGLGLAIVKKLTELMGGEVKLKSVESIGTQFLVELP 491 >gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] Length = 744 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E + K K++ + +S+ELR+PL IIG + +L G L+++Q +Y Sbjct: 222 RDITERKRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILLE---GELSAQQREY 278 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L ++ +DI+DL +D+ ++L S + + L++ + + I+ Sbjct: 279 LKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKF 338 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727 + D L FV D RL QI +++NA+ F+ G + LK RD+ + F +K++G Sbjct: 339 TIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSG 398 Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + + +F F N+ + +G G+GL+I + L GG +++ S Sbjct: 399 IGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVES 449 >gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1002 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 8/230 (3%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A+ K F+ V++EL++PL I+G+ LL+ + Q+ + I ++TI LV Sbjct: 773 ANRFKTEFLLTVTHELQAPLATILGWARLLQAKSFNPDTTTQA--LAAIERNATIQAKLV 830 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-- 682 D+LD++++ +G ++L L L+ I + +S + SF A Sbjct: 831 KDLLDISSLLSGNLRLKAQLFDLVALVQNAMAKFRPLAEAKGIDLAELST-NVASFPALI 889 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D RL Q+ + +L NA+ F+ G V ++ R + + +V + G I D +F+RF Sbjct: 890 DGDRLRQVITNLLDNALKFTPAGGQVAIQLERQDAEVQITVTDTGIGIRPDFLPYIFDRF 949 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 + R G+G+GL+I + LH G + +S+ EG TT R+P Sbjct: 950 TQAESPSRYTPGGLGIGLAIARHLVELHHGTIIATSAGEGQGTTFTVRLP 999 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 5/236 (2%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 + EAL + D K +F +VS+E R+PLT ++G + L+ Q Q +E I + Sbjct: 346 RAEALAELDRAKTAFFSNVSHEFRTPLTLMLGPAADALADQEDPLSPGQQQRIELIQRNG 405 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 LL LVN +LD + +++ ++ Y L E+ + + +R V Sbjct: 406 LRLLKLVNTLLDFSQIESDRLQAVYEPTDLATFTAELASVFRAAIEQAGLRFVVDCSPLP 465 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736 DR+ +I +LSNA F+ G + R G+ + ++++ G IP Sbjct: 466 EPVYIDREMWEKIVLNLLSNAFKFTFSGEITVRLQQR--GEQVELAIQDTGIGIPVTEMP 523 Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F RF V A G G+GLS+V+ + LHGG V + S + + IP+ Sbjct: 524 RLFERFHRVKGAQGRTFEGSGIGLSLVQELVKLHGGTVQVDSVEGSGSCFRVSIPT 579 >gi|160936856|ref|ZP_02084221.1| hypothetical protein CLOBOL_01745 [Clostridium bolteae ATCC BAA-613] gi|158440237|gb|EDP17983.1| hypothetical protein CLOBOL_01745 [Clostridium bolteae ATCC BAA-613] Length = 374 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSL 602 N+ V R L +K R+++ KN + +V+++LR+PLT+IIG+ +LL SK+ + Sbjct: 118 NLNKMVEDIRELMDKE---RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNSKIPA- 173 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 Q +Y+E + L L+ D+ ++ G + ++ S + + LL ++ + Sbjct: 174 -QMQHKYIEIAYGKARRLEKLIEDLFGFTKLNYGRISMHVSQLDVVKLLGQLLEEAYPNF 232 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722 E N+ + S+ + AD L ++F ++ NA+ + + G V++K S Sbjct: 233 VEKNLSYDLQSNVPVKIITADGNLLARLFDNLIGNAIKYGADGKRVLVKILAQEDVVTVS 292 Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 + N G IP + +FN+F V + G GLGL+I + +++HGG ++++S +G Sbjct: 293 ITNYGYVIPPEELPLIFNKFYRVEQSRSSSTGGTGLGLAIAKEIVDMHGGTINVTSDLDG 352 Query: 781 -VTTINCRI 788 V T+ ++ Sbjct: 353 TVFTVKLQV 361 >gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. 230613] Length = 522 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++K + ++ FV +VS+EL++PLT+I GF++ LK + ++++ I+ + L Sbjct: 293 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 349 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 L+NDIL L+ ++ +L I LN+L+ +V + + NIRI ++ + K+ + Sbjct: 350 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 408 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741 ++ + Q+ ++ NA+ ++ V + +D G+ +F V++ G I E+ +F R Sbjct: 409 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 468 Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 F V A G GLGL+IV+ + G + + S + T +IP Sbjct: 469 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 518 >gi|163745614|ref|ZP_02152974.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161382432|gb|EDQ06841.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 696 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 109/440 (24%), Positives = 181/440 (41%), Gaps = 68/440 (15%) Query: 379 FSVYKSSETHKDTW--HLPNGQTLHVIVTSNPRGGTI--WMFENLTVQVDLETKYNTLVK 434 F V++ + T K+ W H P+ ++ G TI W L L + ++ Sbjct: 252 FGVWQLAATVKNGWPEHRPDFWLHWLLRLQGAAGVTIFAWYIMRLAENRKLAEER---LR 308 Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494 + E +DH G ++ G + L N +R + E + PG+ I R Sbjct: 309 MGIEALDH---GFVMYNAKGILVLCNEKYREIHDYSEV-VKPGSSYEKIVRDSIRRGIVP 364 Query: 495 DG----------WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544 D W L +F+ E++ G + SD +E + + ++ Sbjct: 365 DAVGKEEEWIRVW-LEKRENGAFETEQRMPDGRIIRTSDRRME-------DGSVVGLRID 416 Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------- 595 VTD +A + N+A K F+ +S+ELR+PLT I+G L + Sbjct: 417 VTDLKKALLTAEDANKA-------KTDFMGVLSHELRTPLTVILGHVRLARHFDRTPAAR 469 Query: 596 ----------------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 KL + SK ++ + S LL L+N++LD A +DAG + Sbjct: 470 DLSTAIDADPQTRETLAPKLATTLSKLGDIMQTVERSGNHLLTLINEVLDFAKIDAGSLS 529 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699 + + ++D++ + + + + +KV S G +AD +R+ QI +LSNA Sbjct: 530 ITMEPVQIDDIVAPTVDQLRPMIEDKGLELKVKS--ATGVMLADGKRIQQILINLLSNAT 587 Query: 700 DFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756 FS +G+ I R G+ + F V + G IPE+ + VF F RR G GL Sbjct: 588 KFSDQGT--ISLTCRIRGEVVEFRVTDTGIGIPENELERVFEPFHQVDSTATRRFGGTGL 645 Query: 757 GLSIVESFINLHGGHVSISS 776 GL+I HGG + +S Sbjct: 646 GLAISRDIATAHGGSLVATS 665 >gi|78047475|ref|YP_363650.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035905|emb|CAJ23596.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 726 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 17/248 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA+T R A++ K+ F+ ++S+E R+PL + G T++L T++ L+++Q + + Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670 I AS+ LL+LV ++LD++ ++AG ++++ L +++ V + + + + Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYATE 289 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724 V +D D L Q+ +L NA+ F+ G V+L+ AR +G+ F V+ Sbjct: 290 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARVSGNGADTMRLRFDVE 347 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++G +P DM +F F A G R G GLG +I + + GG + + + G Sbjct: 348 DSGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGG 406 Query: 782 TTINCRIP 789 + +P Sbjct: 407 SVFWFELP 414 >gi|329998865|ref|ZP_08303233.1| histidine kinase KdpD [Klebsiella sp. MS 92-3] gi|328538537|gb|EGF64646.1| histidine kinase KdpD [Klebsiella sp. MS 92-3] Length = 895 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%) Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588 +P Q +L TF + S LT E R E ++NS + +S++LR+PLT + Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G ++L T L S SK + I LVN++LD+A + +G L+ + L Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +++ + + + +I++ + +L D ++ +L NA ++ +++ Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGSRASI 800 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 ++A D V +NG IP +++F++F GVGLGL+I ++ +++H Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG +S S+ EG + +P + Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883 >gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] Length = 568 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 12/242 (4%) Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 + ++E+ ++A+E + + FV +++ELR+PL ++G +LL + SL+ +Q Y+ Sbjct: 188 MKRQDESRKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLT 244 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + S +L ++ND+LD + ++AG+M+L + DL + + + K E I V Sbjct: 245 NLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVV 304 Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729 + G+ ++ + D +R+ QI ++ NA+ F+ +G+ + AAR + + + + G Sbjct: 305 NTRGEFPTYWIGDVERINQILVNLVGNAIKFTHRGAVTV--AARWVDERLLLRISDTGIG 362 Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IP ++F+ F V + Q G GLGL+I ++ + L G + SS + T Sbjct: 363 IPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVS 422 Query: 788 IP 789 IP Sbjct: 423 IP 424 >gi|239787644|emb|CAX84112.1| sensor protein [uncultured bacterium] Length = 652 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 119/228 (52%), Gaps = 10/228 (4%) Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 +TE+ + LR+++ F S+++R PL+ I+GF LL ++++ ++Y++ Sbjct: 414 ITERKQVESQLRRSNAELEQFAYVASHDMRDPLSVIVGFCKLLAAQCEAKMDAESAEYLD 473 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 +I+ S+ LL + D+L+LA V G K ++ L +++ +++ ++ + N Sbjct: 474 HIAGSANRLLGMTTDLLELAKVAQG--KRAFAPTDLGQVVDVALENLKQRIQDAN---AS 528 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSS 729 +S L +AD ++++ +F ++ NA+ + + + + AA+ G F V++NG Sbjct: 529 VSSAPLPVILADEKQMVSLFQNLIGNAIKYRREDVPLHIHIGAAQAEGQVTFFVRDNGVG 588 Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777 I + + +F F + R+G G+GL++ + HGG + + S+ Sbjct: 589 IAPEYIEKIFMVFNRVPDQADRKGWGIGLAVCHRIVERHGGRIWVEST 636 >gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32] gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32] Length = 645 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 119/243 (48%), Gaps = 8/243 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + +A + + K+ F+ ++S+ELR+P+ I+G LL + G L KQ + + + Sbjct: 250 LEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILGVLQLLLSGHAGQLEKKQRELLLKAT 309 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S +LL +++DILDL+ ++AG ++++ L L++ +++ + + + Sbjct: 310 KSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLRKCLSDAVDYFSSEAQGKGLHLTLSIA 369 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728 + V D+ RL Q+ ++ NA+ F+ G + K A + F++ + G Sbjct: 370 PDVPDVVKGDQVRLRQVLLNLIGNAVKFTDHGRVEVKAVTGNKTATGETEITFTINDTGI 429 Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 IP D +F F V ++ R + G GLGL+I + + GG ++ S + +T Sbjct: 430 GIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLAISSQIVEMMGGRIAFDSREGEGSTFFF 489 Query: 787 RIP 789 +P Sbjct: 490 TVP 492 >gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP07] Length = 429 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +S G+ +G I L N + + K+E N+L G +I + E + Sbjct: 95 ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILR 147 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558 I S D+E ++ D V + + P L N ++ + VN+ D +T+K Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 K + +++ FV +VS+EL++PLT+I GF + LK+++ +N++ ++++E I + S Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251 Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L L++DIL L+ V D +M+ +V+ D+ EV + E NI + D Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K S ++++ + Q+F ++ NA+ ++ V + +D + V +NG IP++ Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F RF V A G GLGL+I + + G + + S Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410 >gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 596 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 128/246 (52%), Gaps = 9/246 (3%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +LT + + VR+ A+ ++ +++K+ FV +VS+ELR+P++ + G+++ + Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 + + + ++ + I S + LVND+LDLA ++AG +++ + L LL +V + Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANF 454 Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715 EN + + + + + D R+ Q+ ++ NA+ + K V+LK D Sbjct: 455 DVLAKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNAIRHTGKEGYQGKVVLKQTID 514 Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGG 770 N I +V +NGS I E+ +F RF RG+ G G+GL+IV++ + HGG Sbjct: 515 ETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHGG 574 Query: 771 HVSISS 776 +S+ S Sbjct: 575 KISVKS 580 >gi|238893743|ref|YP_002918477.1| sensor protein KdpD [Klebsiella pneumoniae NTUH-K2044] gi|238546059|dbj|BAH62410.1| sensor for high-affinity potassium transport system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 895 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%) Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588 +P Q +L TF + S LT E R E ++NS + +S++LR+PLT + Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G ++L T L S SK + I LVN++LD+A + +G L+ + L Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +++ + + + +I++ + +L D ++ +L NA ++ +++ Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARASI 800 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 ++A D V +NG IP +++F++F GVGLGL+I ++ +++H Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG +S S+ EG + +P + Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883 >gi|28379576|ref|NP_786468.1| histidine protein kinase; sensor protein [Lactobacillus plantarum WCFS1] gi|254557718|ref|YP_003064135.1| histidine protein kinase; sensor protein [Lactobacillus plantarum JDM1] gi|300769514|ref|ZP_07079400.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181804|ref|YP_003925932.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272416|emb|CAD65339.1| histidine protein kinase; sensor protein [Lactobacillus plantarum WCFS1] gi|254046645|gb|ACT63438.1| histidine protein kinase; sensor protein [Lactobacillus plantarum JDM1] gi|300492929|gb|EFK28111.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047295|gb|ADN99838.1| histidine protein kinase; sensor protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 386 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 120/231 (51%), Gaps = 4/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ + K++ + +VS+++R+PLT+IIG+ L++ + S +Y +T + + Sbjct: 144 REIERSKDALITNVSHDIRTPLTSIIGYLGLIENKQYQS-EEDLIKYAHIAYLKATQMKS 202 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV D+ + L + + L +L ++ S + ++ +++I+V S + A Sbjct: 203 LVEDLFEYTKSRQTETPLAINRLNLTAMLEQLAASFELEANKKHLKIEVESGTQPIYIEA 262 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L ++FS +++NA + + V+L+A + + + V N+G IP + +F RF Sbjct: 263 DAEKLGRVFSNLITNAFKYGTGAKNVVLQAEQRGEEVVIHVTNDGQRIPAESLGRLFERF 322 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S ++ HGG++ S DE T+ +P K Sbjct: 323 YRVEESRSKATGGSGLGLAIAQSIVDHHGGYIYAQSDDEQ-TSFVIHLPVK 372 >gi|254496713|ref|ZP_05109575.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12] gi|254354054|gb|EET12727.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12] Length = 537 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 +++T+ +A+ L EA A K F+ ++S+++R+PLT ++G LL+ + Sbjct: 215 LDITELKKAQADLNIAKEAAEAASHAKTEFIANMSHDIRTPLTGVVGMAKLLEDN---VH 271 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ Q QY ++ S LL+++N ILD+ + D A L+ + L++++N++ Q Sbjct: 272 DANQKQYAHWLGESGKQLLHMLNGILDVVSADNAHEDDLHEESFNLHEVINDIVQLERPS 331 Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716 + + D + F V+D+ ++ +I +L NA+ F+ +G I L+ + Sbjct: 332 TLIKGLDLVTFVDAAIPPFLVSDQTKIHRILLNLLGNAIKFTQEGQVGIHVNLLEKNETH 391 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 F + + G IP+++ VF+RF + +++G G G+GL I +S++ L GG + + Sbjct: 392 VLVQFRITDTGIGIPQELQDKVFDRFYRIIPSNKGTYTGHGVGLHIAQSYVELLGGEILL 451 Query: 775 SS 776 SS Sbjct: 452 SS 453 >gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] Length = 959 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 18/253 (7%) Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQS 607 R E+ L + E + A K+ F+ +S+++R+P+ I+G S +G L ++ Sbjct: 430 ARQEQLLRDALEEAKAASNAKSDFLSRMSHDIRTPINAIVGM------STIGQLKIDDRN 483 Query: 608 QYV---EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Q V + I SS LL+L+NDILD++ ++ G M L L++L+N + + ++ Sbjct: 484 QSVNCFKKIDDSSRYLLSLINDILDMSKIENGKMALTDEQFDLHELINSITAIVYSQSVF 543 Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--D 718 NI+ +V + L ++ D R+ QI +LSN++ F+ G + L ++ R G Sbjct: 544 KNIQFEVYCEDSLQQYYLGDALRMNQILMNLLSNSLKFTPAGGMITLHVKESKRRCGYSY 603 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V ++G + ED K ++ F A R G GLGLSIV + + L G +++ S Sbjct: 604 LAFQVTDSGKGMSEDFMKRLYQPFEQEAADTARNLTGTGLGLSIVYNLVQLMNGTINVES 663 Query: 777 SDEGVTTINCRIP 789 T + IP Sbjct: 664 RLGEGTVFSIEIP 676 >gi|239628737|ref|ZP_04671768.1| sensor protein kdpD [Clostridiales bacterium 1_7_47_FAA] gi|239518883|gb|EEQ58749.1| sensor protein kdpD [Clostridiales bacterium 1_7_47FAA] Length = 538 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISA 615 E N + + +K++ ++ +S++LR+PLT I G L LG ++ ++ I Sbjct: 299 EDNRVQVERERLKSTLLRSISHDLRTPLTGISGSAGFL-YDNLGIMDDATIKSMLKDICT 357 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 S L ++V ++L++ + G + +N VL+D+++ + ++ ++ + +R D Sbjct: 358 DSEWLSSMVENLLNMTRIQEGRLDINKKKEVLDDIVSSAVRLVSKRIGNHTLRTHTPEDI 417 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 L F D + +Q+ +L NA S +TV LK ++ +F+V +NG + ++ Sbjct: 418 IL--FPVDGRLFIQVLVNLLDNAFRHSGNSTTVTLKVVKEGDVLVFTVSDNGVGLSQEKI 475 Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F+ F + A+ ++RGVGLGL+I ++ + GG ++ + +G R+P Sbjct: 476 DKIFDNFFTTAYEKGDKQRGVGLGLTICKAIVEAQGGTITAYNGSQGGAVFEIRMP 531 >gi|163744440|ref|ZP_02151800.1| periplasmic sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161381258|gb|EDQ05667.1| periplasmic sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 592 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 8/245 (3%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +TFV+VT + AL +ALR+ADE K+ F+ VS+ELR+PLT++ G L + Sbjct: 322 VTFVDVTKRIATTTAL---EQALREADEANRAKDEFISVVSHELRTPLTSLKGGLALALS 378 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 KLG + ++ + L LV++IL + ++ + L + + L LL + + Sbjct: 379 GKLGEVRGPLRSSLDIAHRNGVRLSRLVDNILLVQKLEVQALSLEWLPVDLPTLLRDSIE 438 Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716 HE +R+ + + + D + Q+ ++SNA+ FS G+TV + Sbjct: 439 ENRMYAHERGVRLDIGKIDQAAVVLGDAFAIRQVVDNLISNAVKFSHVGNTVEGTLTTNQ 498 Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774 G S++++G IP+ M + VF RF GQ+ +G GLGL I GG + Sbjct: 499 GRVRISIRDHGRGIPDGMEERVFGRFGQLDDDGQKSTQGSGLGLHISRQLARQMGGDLFY 558 Query: 775 SSSDE 779 S E Sbjct: 559 ESEVE 563 >gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 700 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T N+T + L E + A++ K+ F+ +S+E+R+PL ++G L+++ L Sbjct: 301 TAKNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLS 357 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 L+SKQ ++ + S+ +LL ++NDILDL+ +++G +L S I + + + V ++ Sbjct: 358 GLDSKQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSP 417 Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + + N++++ I D D+ R+ Q+ ++ NA+ F+S GS I+ AR + Sbjct: 418 QATKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGSVRIV--ARKIEET 475 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 I +V + G I +D +++FN F RR G GLGL+I + I G +S+ S Sbjct: 476 IEIAVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLES 535 >gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 788 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + L ++Q +Y Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 330 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ + + +++ + + +R Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 390 Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 KVI+DG RL QI ++SNA+ F+ +G V ++A D GD Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G I +D +F + V ++H G+ G G+GL++ GG +++S Sbjct: 441 LHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500 Query: 776 S 776 S Sbjct: 501 S 501 >gi|228939673|ref|ZP_04102255.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228958791|ref|ZP_04120502.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228972535|ref|ZP_04133141.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979143|ref|ZP_04139488.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|229044253|ref|ZP_04191926.1| Sensor histidine kinase [Bacillus cereus AH676] gi|229109962|ref|ZP_04239542.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127904|ref|ZP_04256889.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228655548|gb|EEL11401.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673483|gb|EEL28747.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228725078|gb|EEL76362.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228780576|gb|EEM28798.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787172|gb|EEM35145.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228800888|gb|EEM47794.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228820011|gb|EEM66054.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 312 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 82 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ ++ E NI + + +A Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 200 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311 >gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] Length = 744 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ E + K K++ + +S+ELR+PL IIG + +L G L+++Q +Y Sbjct: 222 RDITERKRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILLE---GELSAQQREY 278 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I+ S+ L ++ +DI+DL +D+ ++L S + + L++ + + I+ Sbjct: 279 LKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKF 338 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727 + D L FV D RL QI +++NA+ F+ G + LK RD+ + F +K++G Sbjct: 339 TIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSG 398 Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 I + + +F F N+ + +G G+GL+I + L GG +++ S Sbjct: 399 IGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVES 449 >gi|39726389|gb|AAR30137.1| putative histidine kinase HHK2p [Gibberella moniliformis] Length = 2072 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 15/224 (6%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 L++A E K F+ ++S+E+R+PL I G L+ + +LN +Q Y I S+ L+ Sbjct: 1402 LKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQLDYTNTIQTSANSLI 1458 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 ++NDILDL+ VDAG+MKL Y ++ +V + ++T + + + + + ++V Sbjct: 1459 MIINDILDLSKVDAGMMKLKYEWFHTRSIIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1518 Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARDNGDFI--FSVKNNGSSIP 731 D+ R+ Q+ + NA+ F+S+G V + D + + FSV + G Sbjct: 1519 KGDKVRIRQVLLNVTGNAIKFTSEGEVFSRCRVYVAEGSHVDENEIMLEFSVTDTGRGFS 1578 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 ++ + +F F + + Q G GLGL I LHGG ++ Sbjct: 1579 KEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGSMT 1622 >gi|2218094|gb|AAB71131.1| sensor protein RssA [endosymbiont of Riftia pachyptila] Length = 773 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 +A E L +++ K+ F+ +VS+ELR+PL +I+ + +L+ +L +Q + ++ Sbjct: 371 QAQREHARQLEESNRYKSEFLANVSHELRTPLNSILLLSKMLREEG-DNLGEQQCKQLKV 429 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I + + L L+++ILDL+ ++AG L I + ++ E+ + + + + +K Sbjct: 430 IHEAGSDLKALIDNILDLSRIEAGQAGLVLDQIDIRRMVEELLELVQPQFEAKGLYLKAE 489 Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727 D +L F++D++++ QI LSN++ F+++G IL RD F+++++G Sbjct: 490 FDPQLPDGFLSDQEKVRQILKNFLSNSIKFTAEGGA-ILHVYRDLDSACCPLCFALQDSG 548 Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 IP++ + +F F RR G GLGLSI L GG + + S ++ Sbjct: 549 IGIPQEKHELIFEAFKQADGSTNRRFGGTGLGLSISRQLAQLLGGEIRLQSQEQ 602 >gi|22095684|sp|Q9SSY6|ETR1_CUCSA RecName: Full=Ethylene receptor 1; AltName: Full=CS-ETR1 gi|6136814|dbj|BAA85817.1| ethylene receptor CS-ETR1 [Cucumis sativus] Length = 740 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 35/264 (13%) Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S+RA L E+N AL A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 315 ESMRARDPLMEQNVALDLARREAETANHARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ T L+ + EV I Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHAVFKEVLNLIK 431 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILKA-- 712 + + + L F V D +RL+Q ++ NA+ FS +G S ++ KA Sbjct: 432 PVTLVKKLSLTLHLGLDLPVFAVGDEKRLMQAILNVVGNAVKFSKEGSISISAIVAKAET 491 Query: 713 ------------ARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 D+ ++ VK+ GS I P+D+ K +F +F + G R G GL Sbjct: 492 FREIRVPDFHPVPSDSHFYLRVQVKDTGSGISPQDIPK-LFTKF-AQTTVGPRNSCGSGL 549 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ + S G Sbjct: 550 GLAICKRFVNLMEGHIWLESEGLG 573 >gi|120554284|ref|YP_958635.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120324133|gb|ABM18448.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 644 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 14/227 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E A + K+ F+ +S+ELR+PL ++G DL+ L +QS Y+ S+ Sbjct: 264 EKAEHASQAKSEFLATMSHELRTPLNGVLGMVDLIHEEP---LTKRQSDYLTTARQSTED 320 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG---K 676 LL +++DILD A +D G + L+ L L S + + + + G + Sbjct: 321 LLTVISDILDYARMDNGNLVLDQQAFDLQSLFTNCVASYRHAAEKQGLSLDLQFLGEWPR 380 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732 + + D R+ QI + ++ N++ F+S+G I L+ SVK++GS IP Sbjct: 381 HPAVLGDAPRVRQILAGLIDNSLKFTSEGFVGIRVNWLELENHCVLVQCSVKDSGSGIPA 440 Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776 + +SVFN F G R G GLGLS+V+ + L GGHV + S Sbjct: 441 ERLQSVFNSF-EQLDAGDNRAHGGTGLGLSLVQRLVELMGGHVQVES 486 >gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum] Length = 1260 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 126/246 (51%), Gaps = 31/246 (12%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R + L A ++A ++K+ F+ +S+E+R+P+T ++G ++L + L +Q ++ Sbjct: 717 RENQVLVANESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILLDTP---LEEEQREF 773 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 E I S+ LL ++NDILD++ V++G + + E ++ N+ + Sbjct: 774 AENIQRSANALLTVINDILDISKVESGRLD-----------IEEFDHTVDFSEFGGNMTV 822 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI---FSVKN 725 + D R+ QI + +L+N++ F+ +G + + +++ D I F VK+ Sbjct: 823 -----------IGDPGRVRQILTNLLTNSIKFTHEGFVKLAVGVEKEDEDVIVVKFVVKD 871 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 +G I ED+ + +F F RR G GLGL+I ++ ++L GG + ++SS TT Sbjct: 872 SGIGIDEDVQQKLFQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLASSLGAGTT 931 Query: 784 INCRIP 789 + IP Sbjct: 932 AHFIIP 937 >gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1214 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 13/261 (4%) Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582 +E +IP+ +L F+ +V++ ++ E L + + + K+ F+ +S+E+RS Sbjct: 484 VEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIRS 543 Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642 PL ++G +L+ SKL N Q Y + T LL+ +NDILD + ++AG M L Sbjct: 544 PLNAVLGGVELMLDSKL---NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLEN 600 Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701 + ++ +V Q +A K +E + + + + V D QRL Q+ ++ NA+ F Sbjct: 601 MSFSPAKMVAQVMQILAPKANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIKF 660 Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755 SS G I + +V + G I K +F F V + H +G G Sbjct: 661 SSGGCVSVEMWIPDSHHQEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTG 720 Query: 756 LGLSIVESFINLHGGHVSISS 776 LGL+I I + GG + +SS Sbjct: 721 LGLAICSELIIMMGGEIELSS 741 >gi|262041233|ref|ZP_06014444.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041349|gb|EEW42409.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 895 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%) Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588 +P Q +L TF + S LT E R E ++NS + +S++LR+PLT + Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683 Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648 G ++L T L S SK + I LVN++LD+A + +G L+ + L Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742 Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 +++ + + + +I++ + +L D ++ +L NA ++ +++ Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARASI 800 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768 ++A D V +NG IP +++F++F GVGLGL+I ++ +++H Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860 Query: 769 GGHVSISSSDEGVTTINCRIPSK 791 GG +S S+ EG + +P + Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883 >gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii DSM 18315] gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii DSM 18315] Length = 720 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 14/221 (6%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 + +R+AD++K++F+ ++S+E+R+PL IIGF+++L + ++ ++V+ I+ +S + Sbjct: 494 QKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAET---DDKEEKEEFVKIINKNSDL 550 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678 LL L+ DILD + +++GI+ + + L ++ +E Q A KM E ++ +I D L Sbjct: 551 LLRLITDILDFSKIESGILDYSLADTSLKEIFHEQYQVHALKMPE---KVSLICDFDALP 607 Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 + D +R+ Q+ S ++SNA F+ +GS + G + V + G I + Sbjct: 608 DILIHTDPKRVTQVISNLISNAAKFTEEGS-ISFSYRIVEGYVLIEVIDTGIGISLQHQQ 666 Query: 737 SVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 S+F+RFV N+ ++G GLGL+I ++ I G + + S Sbjct: 667 SIFDRFVKINSF---KQGTGLGLTICKTIIEALNGTIGVDS 704 >gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 563 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 16/250 (6%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + A +A +K+ F+ ++ELR+PL IIGF L+ + + +Q +++E Sbjct: 306 LEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLV-LDGMADDSQEQQEFLEEAH 364 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LLNL+NDILD+A ++AG M L ++ L +L + + + Sbjct: 365 KSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSKYP 424 Query: 675 GKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA---RDN---GDFIFS 722 L V + QRLLQ+ ++SNA+ F+ G + I+K RD G Sbjct: 425 PTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIKVR 484 Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 V + G + + +F +FV +H G GLGL+I + + GG V S EG Sbjct: 485 VSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMGEG 544 Query: 781 V-TTINCRIP 789 + +T+ +P Sbjct: 545 LGSTVTFTVP 554 >gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] Length = 591 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 6/251 (2%) Query: 548 SVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNS 604 SVR AE+ L A + K+ F+ ++S+E+R+PL I+GF + LL+ SK L Sbjct: 190 SVRKDAEKELIAMKLRAEDASKAKSQFLANMSHEIRTPLGAIMGFNEILLENSKSLELPD 249 Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664 Y+ YI S LL ++N+ILD++ ++ KL + L + + E Sbjct: 250 YYPLYLNYIDNSLQYLLKVINNILDISKIEERKFKLKVEDVDLEKFFKNIVYTYKHLAEE 309 Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 I + + +V D +L Q+ +L NA F+ V + D+ I V Sbjct: 310 KKINFIYKNTELIAKYVKIDPVKLQQVIINLLDNAFKFTPVNKLVEMTVKTDDQKLIILV 369 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 ++ G IP++ +++F F V +++ +G GLGLSI + FI L GG +S+ S Sbjct: 370 RDEGIGIPKEYQETIFKVFEQVDDSNTRSYQGTGLGLSISKKFIELMGGIISLESGINQG 429 Query: 782 TTINCRIPSKE 792 + + +P KE Sbjct: 430 SMFSINLPLKE 440 >gi|114571161|ref|YP_757841.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341623|gb|ABI66903.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 554 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 13/245 (5%) Query: 538 TMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596 T+L V V VRA ER L A R+AD K++F+ ++S+E+R+P+ ++G DL + Sbjct: 145 TVLGLVCVIGFVRALERMLV----AARQADAAKSAFLANMSHEIRTPMNGVLGLLDLARN 200 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 G L+++ V AS+T L+ ++NDILD++ +D G + + L L EV Sbjct: 201 GPDGRLDAEG---VVTAHASATALVTVLNDILDVSKLDQGAIVIREEPCDLRGLCEEVIS 257 Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA 713 ++ +I + + D L + D RL Q+ ++ NA+ F+ +G + Sbjct: 258 LFGVQVSGRDIALVLDYDDSLQNCYALDAVRLRQVMWNLVGNAVKFTERGEVRLAVRPEP 317 Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771 G F V + G + + + +F+RF R G GLGL+I L GG Sbjct: 318 GGGGGLQFEVSDTGIGLSAEARERIFDRFAQADDTTTRDFGGTGLGLTICRELTRLMGGE 377 Query: 772 VSISS 776 +++ S Sbjct: 378 LAVES 382 >gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum] Length = 928 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS LN+ Q+ Y+ I S+ LL Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LNTTQTDYLLTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L+ L++V +A HE + + + I + + Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I K +++ V+ + G I E Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 501 >gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1058 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 12/255 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT+ + AL E A+ K+ F+ ++S+E+R+PL IIG T L ++ + Sbjct: 491 DVTERKQTAEALLRTKEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHTR---ED 547 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 K+ +++ ++ ++ LL L+NDILD++ ++AG + L L+ ++A + Sbjct: 548 DKRQRFLATVAHAADSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVATLAAQAS 607 Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG 717 E + +++ + + D RL QI +L NA+ F+ G+ + DN Sbjct: 608 EKGLDLRLHLGPALPDCLLGDALRLRQILLNLLGNAVKFTPAGTITLEAFAEEAEDADNR 667 Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 ++ V + G IP + + +FNRF N++ Q G GLGLSI L G + Sbjct: 668 VYLHLRVTDTGIGIPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAALMHGRLWA 727 Query: 775 SSSDEGVTTINCRIP 789 S + +T +C IP Sbjct: 728 ESRENQGSTFHCLIP 742 >gi|304311042|ref|YP_003810640.1| histidine kinase [gamma proteobacterium HdN1] gi|301796775|emb|CBL44987.1| histidine kinase [gamma proteobacterium HdN1] Length = 542 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 12/238 (5%) Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D R + L E+ A K SF+ ++S+E+R+P+ +I LL + L +++Q Sbjct: 151 DVRRLNKDLLRARESAEVASRAKASFLSNMSHEIRTPMNGVIASAQLLADTPL---DAEQ 207 Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666 V I+ S+ LL ++ND+LDL+ ++ G M L + LN++L E + E Sbjct: 208 KDLVGLINRSANTLLAVLNDLLDLSKIETGTMTLEKRSFDLNEILQEACDLCIPQAEERG 267 Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720 + + + I +G S AD R+ Q+ +++NA+ F+ +GS V ++ D D I Sbjct: 268 VNVCLTIEEGTPLSMFADPVRIRQVVMNLVANAVKFTPEGS-VTVEVGHDQIDEQRFNVI 326 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + + G IP+D +F+ +A R GLGL+I +S ++L G + + S Sbjct: 327 VEINDTGIVIPKDRIDKLFDEGDVDAASSARHFGSTGLGLTICKSLVDLMDGVIEVDS 384 >gi|284050788|ref|ZP_06380998.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 462 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 16/214 (7%) Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647 +GF DLL+++ + + S Y++ I++S LL L+NDILDL+ ++AG ++L+Y + + Sbjct: 1 LGFADLLQST---ITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNI 57 Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706 ++NE++ K E NI ++V I+ S + D RL QI I+ N++ F+ GS Sbjct: 58 RTIINEIEHIFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGS 117 Query: 707 TVILKA--------ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755 I+ + ++ + ++ + G I PED K +F+ F + + R+ G G Sbjct: 118 VKIMASCSQLKPNHPYNSINLKIAITDTGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTG 176 Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 LGL+I E ++L GG + + S +T P Sbjct: 177 LGLTITERLVHLLGGSIHLESQINQGSTFTFDFP 210 >gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] Length = 447 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E++ + K+ F+ +VS+EL++PL IIGF+DL++T+++ L ++ +Y I Sbjct: 208 LKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLIRTAEV--LGTEHREYANDIY 265 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LLNL+NDILD + + +++ + L L + TK + I S+ Sbjct: 266 YSGNHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKKIKIVKSFFSN 325 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-D 733 L +D +R+ Q+ ILSN++ F+++ + + R + + +NG IPE D Sbjct: 326 KIL--IKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPSEIEIEISDNGVGIPEKD 383 Query: 734 MCK--SVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + K SVF + SN ++ G G+GL + + + L GG I S + T + R+P Sbjct: 384 IAKALSVFGQ--SNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLPY 441 Query: 791 KE 792 +E Sbjct: 442 RE 443 >gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex domain structure [Roseobacter sp. MED193] gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex domain structure [Roseobacter sp. MED193] Length = 736 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 134/263 (50%), Gaps = 14/263 (5%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 M+ F + +S + + E+ KA+ K+ F+ +S+E+R+P+ ++G ++L+ + Sbjct: 188 MMAFGQLAESYSDDLLRAHQKES--KANRAKSEFLAAMSHEIRTPMNGVLGMVEVLEKTD 245 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658 L +Q + + I SS LL +++DILD++ ++AG M+L + + L L+ ++ Sbjct: 246 LAP---EQRRILHTIQESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLIEGATATL 302 Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS------SKGSTVILK 711 ++ +++ + L +F D R+ QI ++ NA+ FS G + Sbjct: 303 RPHANQMGVQLSLSVQADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEPGQVKLRV 362 Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769 R+ G F +++NG I ++ +++F F +A +R +G GLGL+IV+ ++ G Sbjct: 363 EIREAGWIDFVIEDNGIGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQQLVSKMG 422 Query: 770 GHVSISSSDEGVTTINCRIPSKE 792 G V + S+ + R+P E Sbjct: 423 GAVKVDSTLGEGSVFTVRLPLVE 445 >gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 603 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 44/275 (16%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L E+ + A+E+K++F+ ++S+E+R+P+ IIG ++L + L + +Q +Y+E I Sbjct: 176 LQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEMLSDTML---SVEQREYIENIK 232 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S+ LL ++N ILDL+ V+AG M ++ + L+ L NEV A K + + + Sbjct: 233 VSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIKARQRGLVLDYHYT 292 Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNG-------------- 717 L +V D RL Q+ +++NA+ F+ +G T+ +K +DN Sbjct: 293 ESLSPYVKGDPVRLKQVMVNLVNNAIKFTREGGRVTIDVKHMQDNPCLDNKDCDHAKGNN 352 Query: 718 ----DFIFSVKNN----------------GSSIPEDMCKSVFNRFVSNAHRGQRR---GV 754 DF KN+ G I + +++F+ + A++ R G Sbjct: 353 DSRLDFAIDDKNSTTIHQEMTLCIEVTDTGVGIKSESLEAIFDAY-DQANKYTHRLYGGT 411 Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 GLGLS+ +S + L GG++ + S TT +P Sbjct: 412 GLGLSVCKSLVELMGGYIEVDSVVGIGTTFRVLLP 446 >gi|330718092|ref|ZP_08312692.1| Signal transduction histidine kinase [Leuconostoc fallax KCTC 3537] Length = 345 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 128/259 (49%), Gaps = 8/259 (3%) Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593 P A +NV++ + A E R +++ K+ + ++S++LR+PLT IIG+ L Sbjct: 85 PFAPRTQALINVSNRIAETTAHLRAEE--RASEQSKDEMITNISHDLRTPLTAIIGYLGL 142 Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653 ++ S + + +Y+ S + +LV D+ + + LN + + L+DL + Sbjct: 143 VEMGDRLS-EADRRKYIHTAYDKSNQMKSLVEDLFEFSKTQTSDAVLNINQLSLSDLFAQ 201 Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713 + S + NI + +++ L D +L + ++ NA+ + +G+T I A Sbjct: 202 LLASYEIDARDKNIELMQLTEPNLIIMEGDSDKLARALMNLIINALKYG-EGATFIKLTA 260 Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770 + GD + V NNG IP+ K +F+RF V ++ + G GLGL+IV+ I H G Sbjct: 261 QVRGDQVEIRVSNNGVPIPQKDLKDIFDRFYRVESSRSSKTGGTGLGLAIVKGIIEQHAG 320 Query: 771 HVSISSSDEGVTTINCRIP 789 + S+DE +T+ +P Sbjct: 321 SIYAQSNDE-ITSFVMTLP 338 >gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae WPP163] gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae WPP163] Length = 928 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS LN+ Q+ Y+ I S+ LL Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LNTTQTDYLLTIERSANNLL 339 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 N++ND+LD + ++AG + L L+ L++V +A HE + + + I + + Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736 V D R+ QI + +L NA+ F+ +G+ I K +++ V+ + G I E Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 +F F RR G GLGL I + + GG +S S Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 501 >gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 509 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 12/242 (4%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +L +K + +E FV +S+ELR+PLT I ++L+ + +L+ + Sbjct: 255 RTAGSLEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLE-DEADTLDPMIAPA 313 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V + + + L +LV +++++ DAG +L T+ D+ ++V I + + + + Sbjct: 314 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDTV---DVADQVTACIDARAWLDAVNL 370 Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728 D + G V D +RL I + ++ NA+ GS V ++ + + + V+++G Sbjct: 371 ----DAERGMMVRLDPRRLDVILANLIGNALKHG--GSPVDVRVRTEGEELVIEVRDHGP 424 Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 IPED+ VF+RF ++A R + G GLGLSI ++HGG ++ ++S +G R Sbjct: 425 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELR 484 Query: 788 IP 789 +P Sbjct: 485 LP 486 >gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 596 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 4/231 (1%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621 LR + I+ FV VS+ELR+PLT+I G+ + L + Q+ ++ I S L Sbjct: 357 LRNLERIRRDFVSSVSHELRTPLTSIRGYAETLLDGAMNDPEHAQA-FLRIILQESEQLT 415 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681 LVND+LDL+ +++G ++ Y + L+ ++ + + + ++ ++ L Sbjct: 416 ALVNDVLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQ 475 Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740 AD L + +L NA+ + G+ + A GD + F V++NGS I + +F Sbjct: 476 ADEAYLGIVIRNLLDNAVKYVDAGTGKVRFRAFRTGDSVQFDVEDNGSGIAHQDLERIFE 535 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF V A Q G GLGLSIV+ + H G + + S +T + +P Sbjct: 536 RFYRVDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLP 586 >gi|299538495|ref|ZP_07051778.1| hypothetical protein BFZC1_20893 [Lysinibacillus fusiformis ZC1] gi|298726082|gb|EFI66674.1| hypothetical protein BFZC1_20893 [Lysinibacillus fusiformis ZC1] Length = 375 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 5/230 (2%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 ++A++ KN V ++++++++PLT+IIG+ LL ++ + K+ +YV S L Sbjct: 147 QEAEQRKNDLVVYLAHDIKTPLTSIIGYLSLLDEARDMPVEQKE-KYVAITLDKSYRLEQ 205 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+N+ ++ + + L +I L+ +L +V + + V D + + A Sbjct: 206 LINEFFEITRFNLQSIILEKDSIPLHHMLMQVADEFYPLLAPKGQKAIVKLDEAI-TIYA 264 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L ++F+ IL NA+ +S ST+ + A +N S N G +IP + K +F +F Sbjct: 265 DGNKLARVFNNILKNAIAYSEPNSTIEISAQSENNQTFISFTNTGKTIPPEKLKMIFEKF 324 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 + +A Q G GLGL+I + HGG ++ +SS++ T IP+ Sbjct: 325 YRLDSARSTQTGGAGLGLAISNEIVQAHGGTITATSSND-TTVFTVMIPT 373 >gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341] gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341] Length = 733 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 130/244 (53%), Gaps = 19/244 (7%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 TF T + AE+ K +A KA K++F+ +S+E+R+P+ ++G +L +L Sbjct: 332 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +KQ Q++ + S +++L+N+ILD + ++ G +L+YS L ++ +K ++ Sbjct: 385 --TTKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442 Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD 715 +E ++ ++ ISD + + D+ RL QI +LSNA+ F+ KG S +++ Sbjct: 443 LCYEKGLKFQLHSEISDTRW--YYGDKARLRQIVFNLLSNAVKFTEKGFVSVGLMEEKTH 500 Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772 +G+++ V+++G I ++ +F F RR G GLGL+IV+ L G V Sbjct: 501 DGNYLTIKVQDSGIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGSV 560 Query: 773 SISS 776 + S Sbjct: 561 VVHS 564 >gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 580 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 ++ L++ + A + K+ F+ +S+E+R+P+ IIG T + + S K + Sbjct: 180 QKKLSQDLQYAENASKEKSEFLSKMSHEIRTPMNGIIGMTKIARMSLEN--REKLEDSLN 237 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 + SS LL L+NDILD+A +++G ++L L +L+ ++ A + + NI ++ Sbjct: 238 KLDMSSQFLLALINDILDMARIESGKVELVEKEFNLLQMLDNIEIMFAQRAADKNIDFRL 297 Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI---FSVK 724 I G G + + D R+ QI I+SNA+ F+ G +IL+ + D ++ F V Sbjct: 298 IKRGLTGQALIGDELRITQIIINIVSNAIKFTPSGGEIILEVRQTPTDTSRYVNLEFIVS 357 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 + G + E+ K +F F Q G GLGL+I ++ + + G +S++S +T Sbjct: 358 DTGIGMSEEFMKHMFEPFEQEKQTVRQYGGTGLGLAICQNLVKMMHGTMSVNSLPGEGST 417 Query: 784 INCRI 788 R+ Sbjct: 418 FTVRL 422 >gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 781 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 148/297 (49%), Gaps = 31/297 (10%) Query: 506 SFDDERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALT 556 S E+ S Q T EL+ S+ +LE+ L A T + F+ T ++ RA R + Sbjct: 248 SIPIEQLSPQSTFELVLLDNRSEQILEFYRNLL--ASTGVVFLAGTFAIFISFRASRTIA 305 Query: 557 EKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 + LR+A E K+ F+ ++S+ELR+PL I+GF +L+ S L+ K+ Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQS--AELSEKELNS 363 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 V+ I + LLNL+NDILDL+ ++A ++L + L +LL+ + + + I++ Sbjct: 364 VKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQL 423 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI----F 721 D L + + D RL Q+ +L+NA+ F+ G V+L++ + I F Sbjct: 424 IYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFTDHGQVTFRVVLQSLPPDSTQIVCLRF 483 Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G I + +F F VS+ +R G GLGL++ ++ + G + + S Sbjct: 484 EVEDTGIGILSGQLEKIFIPFERVSDPNR-YVEGTGLGLALSQTIVQHLGSQIQVKS 539 >gi|170686162|ref|ZP_02877384.1| sensory box histidine kinase [Bacillus anthracis str. A0465] gi|170669859|gb|EDT20600.1| sensory box histidine kinase [Bacillus anthracis str. A0465] Length = 363 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 ++L E E +K+ E+KN + ++S++LR+P+T++IG+ DLL +KL S + QYV Sbjct: 123 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 181 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 + S L N V+D+L+ ++ ++L S + + + ++ ++ + ++ + Sbjct: 182 LKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCIK 241 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 D L D ++++F ++SN++ + G + ++ ++ + + +KN G IP Sbjct: 242 GDKGL-HVEMDVALMVRLFENVISNSIMYGKDGKQIWIQISKRDMNVEIEIKNFGQCIPN 300 Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784 + VF +F +RG++ G G+GL+I S LH G +++ S+D E V TI Sbjct: 301 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 355 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-----------PGTHIRNIAATC 487 +D + +G+ + D + + NPA+ S+ + N P IR Sbjct: 588 AMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDDRIR------ 641 Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547 + Y E D A F KS Q L V+E++ P + + T ++T Sbjct: 642 VQEYREQYLDDPVGAFDIEFRMRGKSGQYHWLLSRGRVVEFTADNQPK-RMVGTHKDITR 700 Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 E AL E + A+ K+ F+ ++S+E+R+P+ IIG +L+ ++ L KQ Sbjct: 701 HKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAIIG---MLQLAERTELTPKQR 757 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667 Y+E S+ LL ++NDILD + ++AG ++L L+ +L+ A K + + Sbjct: 758 DYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKSQQKGV 817 Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720 + + + G + D RL Q+ +LSNA+ F+ G + D G+ Sbjct: 818 ELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL--GCEDVGERDHRITLK 875 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 F V++ G I ++ S+F+ F R+ G GLGLSI + +++ GG + + S Sbjct: 876 FWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQS 933 >gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] Length = 565 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 22/229 (9%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E + +E KN F+ +++LR+PL I+G+ +L+ L L+ +Q Y+ I +S Sbjct: 307 EEANRQNERKNQFLGMAAHDLRNPLGVILGYGQMLQEEALEILDEEQLDYLNRIHNASQF 366 Query: 620 LLNLVNDILDLATVDAG----------IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 LNLVN++LD+A +++G +M+ I LN L E KQ I++ Sbjct: 367 TLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQ----------IQL 416 Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729 D L D ++ Q+ + ++SNA+ +S + V + A R D + SV + G Sbjct: 417 NFNYDENLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQNDVLISVTDEGQG 476 Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776 IP+ +F F + + GLGL I + H G + + S Sbjct: 477 IPKSELDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVES 525 >gi|89056552|ref|YP_512003.1| putative PAS/PAC sensor protein [Jannaschia sp. CCS1] gi|88866101|gb|ABD56978.1| DivL protein [Jannaschia sp. CCS1] Length = 549 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 158/390 (40%), Gaps = 34/390 (8%) Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL------DGIYSELA 179 +L+K LR G +F + +D + I GR+ +L+L DG + Sbjct: 95 ELTKRLAGLRDRGDAFLVDGRIGSD-PVFIAGRIEEE----DVLTLSVGPAGDGAGRQTV 149 Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239 ET L + + D +W D G + WAN Y + E + +A G Sbjct: 150 ETA-TLNALQTELLDLRAALDCGVVPMWREDDQGHVTWANAPYFELVER--LRGGQAAGW 206 Query: 240 S-RKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKIVR-----VLNSFGEA 289 ++F + + IS LE + Y++ R L+ F Sbjct: 207 PLPRIFAAGLDQIPTEGTISRCKLEMP--------DRDEPTWYEVSRDHLPGGLSLFTAQ 258 Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349 V E + + L T + L V +A+FD+ R L N + V L + FL+ Sbjct: 259 PADRLVRAETGLREFLQTTTKTFAALPVGLAVFDRKRQLVTFNPALVALTQAGAQFLSQR 318 Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSN 407 P L+ LR ++PE ++ +W+ I + + +E T++ W LP G+T V+ + Sbjct: 319 PDLRSFLDQLREKKRMPEPRDYLSWRNEIAQLEEGAENGTYRQLWELPEGKTFRVMGRPH 378 Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467 P G +MFE+++ +V L ++ +++ +D + +AVF DG + +N + LW Sbjct: 379 PDGAIAFMFEDISAEVSLTRQFRADLEMFQAVLDAVPAAIAVFQADGAMIGANEGYGQLW 438 Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGW 497 + L+ H+ + S W Sbjct: 439 GQDPQVLAQMPHLSQACTDWAEGCKPSQVW 468 >gi|86137305|ref|ZP_01055882.1| sensor histidine kinase [Roseobacter sp. MED193] gi|85825640|gb|EAQ45838.1| sensor histidine kinase [Roseobacter sp. MED193] Length = 897 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R R L NE L + + K++F+ VS+ELR+P+T+I F+++L+ L K+ +Y Sbjct: 650 RTARQLRVSNEKLTQISQQKDAFLSQVSHELRTPMTSIRAFSEILRDDSDMPLVEKR-RY 708 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + L L+ND+LDL+ +++G + LN S LN++L+ +++T + ++ I Sbjct: 709 ATIIHDEALRLTRLLNDLLDLSVLESGQVSLNMSAGTLNEVLD---HAVSTALAGSDHPI 765 Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726 +V D K +D RL Q+F +++NA + + + + ++ R G+ +N Sbjct: 766 QVHRDPKSEDIRISSDLDRLAQVFINLIANAQKYCDADAAELTIQVRRSLGEIWVDFIDN 825 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 GS +P D + +F +F S + G GLGL+I + G +S S +G Sbjct: 826 GSGVPADHQQLIFEKF-SRVSPERAGGAGLGLAICREIMQRLNGDISYLSGQKG 878 >gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01] gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01] Length = 817 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 125/228 (54%), Gaps = 13/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K +F+ +S+E+R+P+ ++G LLKT LNS+Q ++++ + S ++ L+N+I Sbjct: 342 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNSEQEKHLKSLYESGDHMMTLLNEI 397 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LD + ++ G + L+ + L+ ++ + T E ++ KV S+ G + +D+ R Sbjct: 398 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYFTLSSEKGLQFKVYSEVPSGRWYFSDKAR 457 Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743 L QI +L+NA+ F+S+G V LK + D S V++ G I ++ K +F F Sbjct: 458 LRQILFNLLNNAVKFTSRGFVEVYLKEVIEGSDTYLSIRVRDTGIGISKEAQKRIFKPFE 517 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 RR G GLGL+IV+ L G +++ +S+EG+ T+ + R+ Sbjct: 518 QAESSTTRRFGGTGLGLAIVKKIAQLMDGSITV-TSEEGIGTSFDVRL 564 >gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 939 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 11/242 (4%) Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +VT++V+ AL + + A++ K+ F+ ++S+E+R+P+ I+G +L + L + Sbjct: 542 DVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIEL---ALLKDPS 598 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 +E S+ LL+++NDILDL+ ++AG ++L +VL ++ +V +++ Sbjct: 599 CPARGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSLAAS 658 Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720 + + I + D RL Q+ ++ NA+ F+ +G + + R +G I Sbjct: 659 RKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHEGRILVNVETVLRTDGGRI 718 Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775 F+V + G IPE+ +F F Q + G GLGL+I + + L GG VS+ Sbjct: 719 CLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGEVSVR 778 Query: 776 SS 777 S+ Sbjct: 779 ST 780 >gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1443 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 21/254 (8%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 F +++D +AE+AL + A+ K+ FV ++S+ELR+PL I+G+ +L+ + Sbjct: 1076 FRDISDRKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEEP--N 1133 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L++ Q + + I S LL L+NDILDL+ ++A M+L+ L + + + Sbjct: 1134 LSATQKEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVIS 1193 Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------- 709 + N+ + L FV D RL Q+ +L NA+ F+ G Sbjct: 1194 AKQKNLSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGGVTFKVGYLGCSELN 1253 Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763 L + F + + G IP +F F V N R Q G GLGLSI + Sbjct: 1254 VDRSLTEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGNTDR-QVNGTGLGLSISKR 1312 Query: 764 FINLHGGHVSISSS 777 L G + + S+ Sbjct: 1313 LAELMGSELKVKST 1326 >gi|319952894|ref|YP_004164161.1| histidine kinase [Cellulophaga algicola DSM 14237] gi|319421554|gb|ADV48663.1| histidine kinase [Cellulophaga algicola DSM 14237] Length = 512 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 13/229 (5%) Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617 KN L + ++ KNSF+++ S+ELR+PLT+II T +L ++ L ++Q V ++ S+ Sbjct: 123 KNAELEEREKFKNSFIRNFSHELRNPLTSIISITKILSGTE---LTNQQQDMVTFLQQSN 179 Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677 + L L++DIL ++ + +G +KL + L+ L + ++ + TK E +I +V D K+ Sbjct: 180 SNLKQLLDDILSISMISSGRLKLRENIFSLSQLFDLLQFTYKTKASERDIDFEVKVDKKI 239 Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPE 732 V DR RL Q+ + +L NA ++ G + L R N + F V + G + Sbjct: 240 TDLVEGDRLRLFQVLTNLLDNAFKYTQSGKITLDIQLNQKRANRLNLRFEVIDTGVGVSL 299 Query: 733 DMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSS 777 + ++F F S + Q +G GLGLSIV+ + L + + SS Sbjct: 300 ENQITIFESF-SQLNGDQSSDLPKGTGLGLSIVKGLLKLMDSEIKVVSS 347 >gi|228908281|ref|ZP_04072126.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228851322|gb|EEM96131.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] Length = 312 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 82 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ ++ E NI + + +A Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 200 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311 >gi|104779398|ref|YP_605896.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila L48] gi|95108385|emb|CAK13079.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila L48] Length = 592 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 27/355 (7%) Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSL-WKTEENRLSPGTHIRNIAATCSRYYNESDG 496 +D + +G+ + GR++ NP A R L W PG ++A R E Sbjct: 260 VLDSIDDGLLIIDRQGRLEHLNPVAQRQLGW-------DPGRLGMSLAEALQRPELEQQL 312 Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERA 554 + S D L LE+ +S +L YS+ P+ + Q +L V V V +RA Sbjct: 313 RQVLRG--GSLDRPPDDL--NLEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTEQRA 368 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +++ FV S+ELR+P+T + LL+ ++++ ++ I+ Sbjct: 369 F----------ERVRSEFVLRASHELRTPVTGMHMAFGLLRERISFPAGARENDLLDTIA 418 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 L L+ND+L+ + +G+ KL + L++L + A + I + + Sbjct: 419 EEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELFERAQARFAEQAANKQIELLRELE 478 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 L AD +L ++ +L NA+ ++ G + L A R I SV++NG I Sbjct: 479 PPLPRIQADAAQLDRVLDNLLHNAIRHTASGGRIRLHARRHAERVIISVEDNGEGIAYGQ 538 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 +F FV + + G GLGL++ + + LHGG + + S T +P Sbjct: 539 QGRIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQFYMALP 591 >gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 529 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 42/372 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I ++ +G+ V RI ++NPA ++ R + G ++ + C + +S G + Sbjct: 157 IGNIPDGLLVTNDRARITMANPALGGMF-----REAAGGNL--VGRDCREVFADSLGP-M 208 Query: 500 FAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 AAI TS +++++ +EL S + +I Q F+ VR +T Sbjct: 209 LAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGAGQE--EFIGYLIVVRD---IT 260 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG---SLNSKQSQYVE-- 611 + E R +K+ FV VS+ELR+PLT+++GF L+ G + +Q VE Sbjct: 261 HQKEIER----MKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316 Query: 612 ---------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 I L L+N++LDL+ ++AG ++ + +++ + Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI 720 E + + +L DR R++Q+ +++NA F+ G V ++A R G+ + Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGR-VTVRARRAAGEEAVL 435 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F V ++G I + +SVF +F V + + +G GLGL I + + HGG V+ S+ Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495 Query: 779 EGVTTINCRIPS 790 +T +P+ Sbjct: 496 GAGSTFRFTLPT 507 >gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34] gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34] Length = 1309 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 14/234 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ +S+E+R+P+ ++G +LL + SL +QS V + S++ LL +++DIL Sbjct: 798 KDSFLAMMSHEIRTPMNGVLGLAELLSHT---SLTPEQSATVGMMGDSASALLQILDDIL 854 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687 D + ++AG + + + + +L + +AT+ HE + +++ + + V D RL Sbjct: 855 DYSKIEAGRIDIESRPLDIRELCDCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDSVRL 914 Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+ +LSNA+ F+ G S +++ + V + G I +F+ FV Sbjct: 915 RQVLFNLLSNAIKFTESGMVSVSAEVVQETETAQTLRWRVTDTGIGIEPQNQSRLFDPFV 974 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT---INCRIPSKE 792 RR G GLGL+I + L GG +++ S+ G+ T + +P KE Sbjct: 975 QADTSTTRRFGGTGLGLAICRRLVQLMGGRITL-KSEPGIGTQVEVELSLPVKE 1027 >gi|319953826|ref|YP_004165093.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM 14237] gi|319422486|gb|ADV49595.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM 14237] Length = 724 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 10/224 (4%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 +A KA E K +F+ VS+ELR+PL + G T LL + + Q ++++ + S Sbjct: 344 DAAVKAMETKTNFLSTVSHELRTPLYAVTGLTHLLLEE---NPSESQKEHLKALKFSGDY 400 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678 LL+ +NDIL L +DA ++ + L +L+EV S+ EN +I + D + Sbjct: 401 LLSFINDILQLNKIDADKLEAVNTEFSLKKVLSEVISSLQQSAKENKTKISLDYDDTIPK 460 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734 S ++D +L QI ++ N + F+ KG + L D+ F VK+ G I ED Sbjct: 461 SLLSDSMKLSQILINLVGNGLKFTKKGEVTVIAKLLSKVEDDVVIYFEVKDTGIGISEDQ 520 Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 ++F F + + R G GLGL+IV+S + L + + S Sbjct: 521 ITNIFESFEQGSIQINREYGGTGLGLTIVKSLLGLFNSKIDLKS 564 >gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 9/215 (4%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628 K+SF+ ++S+E+R+PL I+G LL+ S +L+++Q+ + I ++ LL L++D+L Sbjct: 249 KSSFLANMSHEIRTPLNAILGLARLLRRS---TLDAQQADRIAKIDDAAHHLLGLISDVL 305 Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688 DL+ V+AG L+ L L+ +V ++A + + +++ + D RL Sbjct: 306 DLSKVEAGRQALDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLR 365 Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744 Q ++NA+ F+ G V +AA + + F V+++G I + +FN F Sbjct: 366 QALLNYMANAVKFTPTGWVRFDVQCEAAGERAVRLHFDVRDSGIGIAPEHLPRLFNDFEQ 425 Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777 RR G GLGL++ S + L GG V + S+ Sbjct: 426 GDKSTTRRFGGTGLGLAVTRSLVELMGGSVGVDSA 460 >gi|148977411|ref|ZP_01814011.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145963363|gb|EDK28628.1| sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 827 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 13/228 (5%) Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627 K +F+ +S+E+R+P+ ++G LLKT LN++Q ++++ + S ++ L+N+I Sbjct: 342 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNAEQEKHLKSLYESGDHMMTLLNEI 397 Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686 LD + ++ G + L+ + L+ ++ + T E ++ KV S+ G + +D+ R Sbjct: 398 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSEVPSGRWYFSDKAR 457 Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743 L QI +L+NA+ F+S+G V LK + D S V++ G I ++ K +F F Sbjct: 458 LRQILFNLLNNAVKFTSRGFVEVYLKEMVEGSDTYLSIRVRDTGIGISKEAQKRIFKPFE 517 Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788 RR G GLGL+IV+ L G++++ +S+EG+ T+ + R+ Sbjct: 518 QAESSTTRRFGGTGLGLAIVKKITQLMDGNITV-TSEEGIGTSFDVRL 564 >gi|126741267|ref|ZP_01756946.1| sensor histidine kinase [Roseobacter sp. SK209-2-6] gi|126717672|gb|EBA14395.1| sensor histidine kinase [Roseobacter sp. SK209-2-6] Length = 896 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R R L E NE L + E K++F+ VS+ELR+P+T+I F+++L+ K S+Y Sbjct: 649 RTARKLRETNEKLTQISEQKDAFLSQVSHELRTPMTSIRAFSEILRDDAELPPEDK-SRY 707 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 I + L L+ND+LDL+ +++G + LN + +L++ + +++T + N + Sbjct: 708 AGIIHDEALRLTRLLNDLLDLSVLESGQVHLNLGS---GNLMDVLDHAVSTALAGNGRTL 764 Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726 KV+ D + + +D RL Q+F +++NA + ++ T+ + + +F +N Sbjct: 765 KVLRDVQNEDLMIFSDLDRLSQVFINLIANAQKYCDAEVPTLRISVSEGQKEFFIQFSDN 824 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 GS IP + + +F +F S + G GLGL+I + G V EG Sbjct: 825 GSGIPAEFQQLIFEKF-SRVSPERAGGAGLGLAICREIMQRLDGDVFYQPGVEG 877 >gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 970 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591 PLP + F N+T+ +AE L + A K+ F+ ++++E R+P+ +I T Sbjct: 582 PLPGNHVGIAFENITERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLT 641 Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651 L + LN +Q Y+ + + LL ++NDILD + ++AG ++L+ L L+ Sbjct: 642 RLALEEE--ELNPRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLI 699 Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-- 708 ++V + ++ H+ I+ +V +++ V D RL Q+ + N + F+ +G + Sbjct: 700 DDVVRPLSPNAHDKAIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQGEVLLK 759 Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764 +LK D F V ++G I + + F RR G GLGL+I + Sbjct: 760 VQLLKRQGDQVTLAFMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQL 819 Query: 765 INLHGGHVSISS 776 + L G + + S Sbjct: 820 LVLMGSELEVES 831 >gi|3123890|gb|AAC38448.1| sensor kinase [Vibrio cholerae] Length = 1146 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 10/263 (3%) Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590 P+ + LT N +T+ E+AL + NE +A E +N F+ VS+ELR+P+ ++G Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643 Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649 ++L + L S +SQ + + SS L L VNDILD + ++A ++L+ L D Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699 Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708 L + + I VI S L D R QI + +LSNA+ F+ +G V Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758 Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766 + K +V++ G + + +S+F F RR G GLG+SIV + I Sbjct: 759 VFKIDVAPEMLTIAVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818 Query: 767 LHGGHVSISSSDEGVTTINCRIP 789 L G + + S E T I +P Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841 >gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 896 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++L+ + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N+ + S Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721 D F D +R+ QI +LSNA F+ KGS + + D + D+I Sbjct: 602 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S+ Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721 Query: 780 GVTTINCRIPS 790 +T IPS Sbjct: 722 EGSTFTVFIPS 732 >gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 458 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 168/367 (45%), Gaps = 36/367 (9%) Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480 VQ LET + +++ +D + + V GRI+ +N + ++ L PG + Sbjct: 97 VQGSLETAAESRRQLEA-LLDSMQDAVVAVDAAGRIQWTNE------RMQKMMLLPGGYF 149 Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540 D+ + + +D +++ + L+ + E + P+P + Sbjct: 150 TGAVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRSTSLVPGRIYEVNASPMPGGGAVA 209 Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 +VT ER T+K+ FV +VS+ELR+PLT+I G+ + L + G Sbjct: 210 VLHDVTRIEEVER--TQKD------------FVANVSHELRTPLTSITGYVETLLDHEAG 255 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 ++ + +++ I ++T + L D+L +A V+A ++L+ + + + L+ E + Sbjct: 256 -ISPQGREFLGTILKNATRMNRLTEDLLVMARVEAATVELSPAPVPADLLVREAVAGMKG 314 Query: 661 KMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKGSTVILKAARD 715 + EN + I I+D ++ AD ++Q+ S ++ NA+ + + G T ++ +AR+ Sbjct: 315 LVQENEGVLEIGTITDCQV---FADHDAVMQVLSNLIENAIKYGQPKAGGGTRVVISARE 371 Query: 716 NG---DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769 D + FSV++ G I + +F RF V + G GLGLSIV + G Sbjct: 372 VAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVDKTRSRESGGTGLGLSIVRHMVQAQG 431 Query: 770 GHVSISS 776 G + S Sbjct: 432 GTIRAES 438 >gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] Length = 896 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 31/259 (11%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++LK + L+ + + I Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-- 672 +S LL L+NDILDL+ V+AG + + + ++D+ A MH+N + I Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDM--------AANMHQNFLHIAAKKN 593 Query: 673 -------SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--- 718 SD F D +R+ QI +LSNA F+ KGS + ++ + D Sbjct: 594 VEFMIEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTHLSDDMQS 653 Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG Sbjct: 654 ISNDWMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGW 713 Query: 772 VSISSSDEGVTTINCRIPS 790 +++ S +T IP+ Sbjct: 714 ITLESHVGEGSTFTVYIPN 732 >gi|225420050|ref|ZP_03762353.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme DSM 15981] gi|225041306|gb|EEG51552.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme DSM 15981] Length = 374 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 9/240 (3%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVE 611 R L EK R+++ KN + +V+++LR+PLT+IIG+ +LL +++ Q +Y+E Sbjct: 127 RQLMEKE---RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNTRIDP--EMQHKYIE 181 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671 S L L+ D+ ++ G M ++ + + L LL ++ + E N+ + Sbjct: 182 IAYGKSKRLEKLIEDLFGFTKLNYGKMSMHVAQLDLVKLLGQLLEEAYPNFAEKNLSYDL 241 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731 S+ AD L ++F ++ NA+ + + G V+++ SV N G IP Sbjct: 242 QSNVPAKMISADGNLLARLFDNLIGNAIKYGADGKRVLVQIFAGEEVVTVSVTNYGYVIP 301 Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788 D +FN+F V + G GLGL+I + +++HGG + ++S G V T+ ++ Sbjct: 302 PDELPLIFNKFYRVERSRSSSTGGTGLGLAIAKEIVDMHGGTIGVTSDLNGTVFTVKLQV 361 >gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia fergusonii ATCC 35469] gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system with ArcA [Escherichia fergusonii ATCC 35469] gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253] gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia fergusonii ECD227] Length = 778 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 128/248 (51%), Gaps = 14/248 (5%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L + LN++Q +Y Sbjct: 264 RDITERKHYQDALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLNAEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+D+ ++ ++L+ I L +++ + + +R Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLSGLQAQQKGLRF 380 Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727 + L + D RL Q+ ++SNA+ F+ +G V ++ D G+ + F V ++G Sbjct: 381 VMEPTLPLPHQVITDGTRLRQVLWNLISNAVKFTQQGK-VEVRVRYDKGEMLHFEVADSG 439 Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS--SDEGVT 782 IP++ +F + V ++ G+ G G+GL++ GG +S+SS V Sbjct: 440 IGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDISVSSVPGQGSVF 499 Query: 783 TINCRIPS 790 T+ R P+ Sbjct: 500 TLTVRAPA 507 >gi|218548556|ref|YP_002382347.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ATCC 35469] gi|218356097|emb|CAQ88714.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia fergusonii ATCC 35469] Length = 914 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + S Q + I+ S LL + Sbjct: 441 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP---ALSTQRDDLRAITDSGESLLTI 497 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S L+ Q ++ ++ IR+ I+D + Sbjct: 498 LNDILDYSAIEAGGKNVSVSDEPFEPRPLMESNLQLMSGRVKGRPIRLATAIADDVPTAL 557 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 558 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 616 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 617 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 663 >gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 951 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%) Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600 T ++T+ AE L + A+ K+ F+ ++S+E+R+P+ I GF +LL++S Sbjct: 299 TAQDITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESS--- 355 Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660 +L+ +Q ++V ++S ILLN++NDILD + ++A + L + L ++ + Sbjct: 356 NLSLEQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVP 415 Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715 K E I++ I D + + D RL QI + +LSN + F+ G I + + Sbjct: 416 KTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKVDYFEEENE 475 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 F V++ G I + +F F R+ G GLGLSI +N+ G ++ Sbjct: 476 IALLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEIT 535 Query: 774 ISSS-DEGVTTINC 786 + S D+G T C Sbjct: 536 VDSVLDKGSTFRFC 549 >gi|325108405|ref|YP_004269473.1| histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968673|gb|ADY59451.1| histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 646 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 19/238 (7%) Query: 560 EALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL---GSLNSKQSQYV 610 E R+ADE+ K+ F+ + +ELR+PL+ + +LL+ S++ ++ S + Sbjct: 259 ELQRRADELSLASRRKDEFLAMLGHELRNPLSTLSVGIELLRQSQVVNEEAIQQMGSDPL 318 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 E I + + LV+D+LD++ + G ++L + I L LL +V + E N ++ Sbjct: 319 EIIGEQTRHITRLVDDLLDVSRITRGRIELRPACIDLAPLLRDVVTRNKGLISERNHTLE 378 Query: 671 -VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVK 724 I DG F+ AD R+ Q+F + NA+ ++ G T+ L A R + + Sbjct: 379 NQIGDGPY--FIHADSTRIRQVFENLYVNAIKYTDPGGTIGLHAESTVFRGGPAVLVKIY 436 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 +NG + E+M K +F+ FV + R G+G+GL++V+ + LH GHV + S G Sbjct: 437 DNGIGLSEEMQKCIFDLFVQDGRSLDRAQGGLGIGLTLVQKLVQLHDGHVEVHSDGRG 494 >gi|300869423|ref|ZP_07114008.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506] gi|300332553|emb|CBN59206.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506] Length = 1748 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 8/167 (4%) Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611 E+ L N L +A +K+ F+ ++S+ELR+PL I+G T+ L+ G +N Q + +E Sbjct: 1478 EQQLERTNAELIRATRLKDEFLANMSHELRTPLNAILGMTEGLQDGVFGIVNESQIKALE 1537 Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSIATKMHENNI 667 I S T LL L+NDILD+A +++G M+L Y+++ +N L L +KQ K + +I Sbjct: 1538 TIEHSGTHLLELINDILDIAKIESGQMELEYTSVSINYLCQSSLAFIKQQALQKHLQVDI 1597 Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714 +I + L D +R+ Q+ +L+NA+ F+ +G + L+ +R Sbjct: 1598 KIPL----NLPDLWVDERRIRQVLINLLNNAVKFTPEGGHITLEVSR 1640 >gi|295707301|ref|YP_003600376.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] gi|294804960|gb|ADF42026.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319] Length = 749 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 112/211 (53%), Gaps = 2/211 (0%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 K++ +K + +VS++LR+PLT+I+ +T LLK+ L S +Q YVE I S L L Sbjct: 528 KSERLKTELITNVSHDLRTPLTSIMTYTALLKSQDLTS--DEQHAYVEIIDRKSKRLQTL 585 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683 ++D+ +++ + +G ++L+ I +N LL++ + ++ ++ ++ S K D Sbjct: 586 IDDLFEVSKMASGNVELHKDKIDINQLLHQALAEYNEAIEDSTLQFRIQSLEKPLFATVD 645 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743 Q+L ++F ++ N + +S + + V + N + KN + +F RF Sbjct: 646 GQKLWRVFDNLIENILKYSLEQTRVYISVQEINEQVKLTFKNVSKYELNEQADELFERFK 705 Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774 Q G GLGL+I +S I+LHGG ++I Sbjct: 706 RGDTSRQTDGSGLGLAIAKSIIDLHGGEMNI 736 >gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046] gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046] Length = 937 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 A + K+ F+ ++S+ELR+PL +I GF LL + +LN+ Q+ Y++ I SS LL L+ Sbjct: 285 ASQSKSVFLANISHELRTPLNSIDGFIHLL--LRQDNLNNDQNLYLQTIRKSSAHLLALI 342 Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683 ND+LD + +DAG ++L+ +T L + + +V ++ + +I + +D V D Sbjct: 343 NDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYADNVPKHVVGD 402 Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738 R QI + ++SNA+ F+ G +I++A + D FSV+++G + K + Sbjct: 403 ALRFKQILTNLISNAIKFTPDGE-IIVRARMEQDDIGQCLLHFSVQDSGIGLSGTDRKKL 461 Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783 F F R+ G GLGL+I + ++L G + + E T Sbjct: 462 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPT 508 >gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli O157:H7 str. EC4024] Length = 777 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 131/242 (54%), Gaps = 30/242 (12%) Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ +AL +A K +F+ +S+ELR+PL I+G + +L ++ L S+Q +Y Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLN----EVKQSIATK 661 ++ I S+ L N+ NDI+D+ ++ ++L+ + L DL N + +Q + Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSF 380 Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719 + E + + KV++DG RL QI ++SNA+ F+ KG V ++ D GD Sbjct: 381 VMEPTLPLPHKVVTDGT---------RLRQILWNLISNAVKFTQKGQ-VAVRIRYDEGDM 430 Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775 + F V+++G IP++ +F + V ++H G+ G G+GL++ + GG ++++ Sbjct: 431 LHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDITVA 490 Query: 776 SS 777 S Sbjct: 491 SQ 492 >gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 770 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 12/233 (5%) Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ + L KA K +F+ +S+ELR+PL I+G + +L + L+ KQ Q Sbjct: 264 RDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---PLDPKQHQQ 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+DL +D +++ + I L L+E++ + + + + Sbjct: 321 LKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYL 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI--FSV 723 DG + FV AD RL Q+ ++ NA+ F+ +G + A G F V Sbjct: 381 HFDRDGDVPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLTHPADTPGKLALHFEV 440 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G IP + +F + + G G+GL++ + GG + + S Sbjct: 441 EDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDS 493 >gi|110834714|ref|YP_693573.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis SK2] gi|110647825|emb|CAL17301.1| sensor histidine kinase/response regulator, putative [Alcanivorax borkumensis SK2] Length = 646 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 144/297 (48%), Gaps = 32/297 (10%) Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKAD-- 566 R+ LQG L L D++ E + R ++ A+TE +A R A Sbjct: 215 RRRLQGELGELQDNINE--------------LAGALEGARRKQQAAMTELQDAHRHAQTA 260 Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 + K+ F+ +S+ELR+P+ ++G LL+ + + N +Q +Y + S+ LL+++N Sbjct: 261 SQAKSDFLAMMSHELRTPMNGVLGMLQLLEET---AQNDEQHEYTQAALESTGHLLDVIN 317 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--D 683 DILD + ++AG M L+ S + LL + + +++ L VA D Sbjct: 318 DILDFSRIEAGRMDLDPSFFEILPLLKNCVATFRYVAESKGLYLQLEGAEALAGQVARSD 377 Query: 684 RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVF 739 RL Q+ S ++SNA+ F+ +G TV + + +GD++ +V + G IP + +F Sbjct: 378 PTRLRQVLSNLISNAVKFTQEGGVTVSVSVSPVHGDWLDLSIAVADTGIGIPREKRAGLF 437 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG--VTTINCRIPSKE 792 F RR G GLGL+I + GG +++ +EG + T++ R+ +E Sbjct: 438 KAFSQIDSSTSRRFGGTGLGLAIARKLSEMLGGTLTVDGREEGGSIFTLSLRLLCRE 494 >gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 529 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 42/372 (11%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499 I ++ +G+ V RI ++NPA ++ R + G ++ + C + +S G + Sbjct: 157 IGNIPDGLLVTNDRARITMANPALGGMF-----REAAGGNL--VGRDCREVFADSLGP-M 208 Query: 500 FAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556 AAI TS +++++ +EL S + +I Q F+ VR +T Sbjct: 209 LAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGAGQE--EFIGYLIVVRD---IT 260 Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG---SLNSKQSQYVE-- 611 + E R +K+ FV VS+ELR+PLT+++GF L+ G + +Q VE Sbjct: 261 HQKEIER----MKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316 Query: 612 ---------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 I L L+N++LDL+ ++AG ++ + +++ + Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376 Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI 720 E + + +L DR R++Q+ +++NA F+ G V ++A R G+ + Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGR-VTVRARRAAGEEAVL 435 Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778 F V ++G I + +SVF +F V + + +G GLGL I + + HGG V+ S+ Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495 Query: 779 EGVTTINCRIPS 790 +T +P+ Sbjct: 496 GAGSTFRFTLPT 507 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + +KN L+ AD++K+ F+ S+ELR+PL ++G + L G + Q + +E Sbjct: 427 KIIKQKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEM 486 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G + ++ I L+ + V + + + +RI Sbjct: 487 IINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 546 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L AD QRL Q+ ++ NA+ ++S+G +I+ A V + G IP Sbjct: 547 IPANLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 605 Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 + + +F + +N++ R+G GLGLSI I L GG + +SS Sbjct: 606 EQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSS 651 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + +KN L+ AD++K+ F+ S+ELR+PL ++G + L G + Q + +E Sbjct: 441 KIIKQKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEM 500 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I S L NLV+D+LD + G + ++ I L+ + V + + + +RI Sbjct: 501 IINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 560 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732 L AD QRL Q+ ++ NA+ ++S+G +I+ A V + G IP Sbjct: 561 IPANLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 619 Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776 + + +F + +N++ R+G GLGLSI I L GG + +SS Sbjct: 620 EQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSS 665 >gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1043 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 12/243 (4%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 +++T AE+ L + E + + K+ F+ +S+E+R+PL +IG ++LL + Sbjct: 649 LIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIED---N 705 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 + Q + ++ + S+ L+ L+ND+LD V+ G ++L + + + +L++ V S+ K Sbjct: 706 PSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNSLQYK 765 Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719 +I I+ D +L + D+ R+ QI ++ N++ F+ KG T+ LK Sbjct: 766 AEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQTAGQ 825 Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773 + F V + G IP D +VF F A R G GLGL+I + I LH ++ Sbjct: 826 VRIRFEVSDTGIGIPPDKLNTVFESF-KQAQTDTTRLYGGTGLGLAITKRLIELHDSRIN 884 Query: 774 ISS 776 + S Sbjct: 885 VES 887 >gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium difficile NAP08] Length = 441 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%) Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502 +S G+ +G I L N + + K+E N+L G +I + E + Sbjct: 95 ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILR 147 Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558 I S D+E ++ D V + + P L N ++ + VN+ D +T+K Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196 Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 K + +++ FV +VS+EL++PLT+I GF + LK+++ +N++ ++++E I + S Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251 Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 L L++DIL L+ V D +M+ +V+ D+ EV + E NI + D Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 K S ++++ + Q+F ++ NA+ ++ V + +D + V +NG IP++ Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 + +F RF V A G GLGL+I + + G + + S Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410 >gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 473 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620 L++ D + FV VS+ELR+PL+ I G+T+ + G + ++ + Y++ I L Sbjct: 244 LKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILD---GMVTPEEMKLYLDTIREEVERL 300 Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679 L +++LDL ++ G +K+ + L ++ ++V + + V +S L Sbjct: 301 KRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVEVSPRSL-- 358 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 + D+ RL Q+ +L NA F+ G +V L+ + + +V++ G IP + ++ Sbjct: 359 VLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPEELPYIW 418 Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790 +F + R G GLGL+IV+ + LHGG V + S +T +P+ Sbjct: 419 EKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLPA 471 >gi|119351157|gb|ABL63473.1| ethylene receptor [Coffea pseudozanguebariae] Length = 740 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%) Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599 +S RA L E+N AL R+A+ +N F+ +++E+R+P+ II + LL+ ++L Sbjct: 314 ESTRAGDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 373 Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659 +Q VE I SS +L L+ND+LDL+ ++ G ++L+ L+ L EV I Sbjct: 374 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLHGLFKEVLNLIK 430 Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709 + + + L + + D +RL+QI ++ NA+ FS +G I Sbjct: 431 PIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGGISISASVAKSDS 490 Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756 L+ R DN ++ VK+ GS I P+D+ K +F +F + + G GL Sbjct: 491 LRDPRAPDFSPMHSDNHFYLRVQVKDTGSGIMPQDIPK-LFTKFAQSQSLAAKNSGGSGL 549 Query: 757 GLSIVESFINLHGGHVSISSSDEG 780 GL+I + F+NL GH+ + S G Sbjct: 550 GLAICKRFVNLMDGHIWLESEGLG 573 >gi|325263100|ref|ZP_08129835.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031493|gb|EGB92773.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 959 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 18/239 (7%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV----EYISASST 618 + A+ K+ F+ +S+++R+P+ IIG S +G L ++ ++ V + I ASS Sbjct: 444 KAANRAKSDFLSRMSHDIRTPMNAIIGM------STIGQLKNEDTKTVKDCFQKIDASSR 497 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677 LL+L+NDILD++ ++ G M++ + ++EV Q I + E + + L Sbjct: 498 YLLSLINDILDMSRIENGKMEIAHEIFDFKAFVDEVNQIIYPQTVEKEVDYDMRCREPLE 557 Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI---FSVKNNGSSIPE 732 ++ D R+ QI +LSN++ F+ G ++ +K R F F V++ G + + Sbjct: 558 AQYIGDSLRMKQILMNLLSNSLKFTPSGGYISIDIKEERRTNGFAYMEFVVQDTGIGMSD 617 Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + VF F R G GLGLSIV + + L GG + + S TT +P Sbjct: 618 QFMQKVFLPFEQEEPGNARNNVGSGLGLSIVYNLVQLMGGSIQVKSEKNAGTTFIVSVP 676 >gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 8/239 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 + +K + A + K F+ ++S+E+R+PL I+GF LL+ + N + QY++ IS Sbjct: 140 IYQKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDE---TTNPRYQQYLDIIS 196 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 S LL+++NDILD + + +G ++ ++D ++ + + NI + D Sbjct: 197 NSGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFID 256 Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733 + VAD R+ QI LSNA+ FS + ++A D G SV++ G I Sbjct: 257 PTIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARCDEGILSLSVRDQGIGIVLA 316 Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + +F+ F S A G + G GLGLSI + + GG + + S+ + +IP Sbjct: 317 DQERIFDAF-SQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIP 374 >gi|283850955|ref|ZP_06368240.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283573601|gb|EFC21576.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 545 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 24/256 (9%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSKLGS 601 L + NE LR+ D +K+ F+ V+++LR+PLT+++GF L + + KL Sbjct: 269 LADANERLRELDALKSGFLATVTHDLRTPLTSVLGFAKLTRRDFIKDFMPFSEVSEKLHR 328 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 ++ + + I L LVND LDL+ +++G + N T+ +++ ++ + Sbjct: 329 KGTRIADNLAIIENEGARLTRLVNDFLDLSKIESGHLAWNDQTVDPTEVVRAAVAAVGGE 388 Query: 662 MHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD 718 +E N R+ ++ D L D RL+Q+ +L+NA + +G V L A R G Sbjct: 389 -YEQNERLALVVDIPETLPPLRLDPDRLMQVLVNLLTNAARHTGEGE-VTLSARRLSTGR 446 Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVS 773 F V + G IPE+ + +F++F RG RRG GLGL+I + + + G + Sbjct: 447 LEFRVADTGPGIPEEERERIFDKFYQT-RRGDTMASDRRGTGLGLAICKHIVERYQGGIR 505 Query: 774 ISSSDEGVTTINCRIP 789 + T+ +P Sbjct: 506 AEARTPRGTSFVVELP 521 >gi|288940892|ref|YP_003443132.1| Osmosensitive K channel His kinase sensor [Allochromatium vinosum DSM 180] gi|288896264|gb|ADC62100.1| Osmosensitive K channel His kinase sensor [Allochromatium vinosum DSM 180] Length = 891 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 6/236 (2%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616 E+ + + + ++++ + VS++LR+PL ++IG L++ + + ++ + + Sbjct: 646 EQAKVAEETERLRSALLSSVSHDLRTPLASMIGAASSLRSLDEALSTDDRRELLDSVISE 705 Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676 L + ++LD+ + G +KL I ++D+LN + +H + I+ I G Sbjct: 706 GERLNRYIQNLLDMTRLGHGTLKLERDWIGIDDILNSALRRTRELLHHCRL-IRHIEPG- 763 Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736 L + Q ++ NA FS +GS V + A RD+G+ + +V + G IP D + Sbjct: 764 LPLLYVHPALIEQALVNVIENAAKFSPEGSEVRVAAMRDDGELLITVADEGPGIPADHRE 823 Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789 VFN F + RG + G GLGL+I I HGG + G TTI +P Sbjct: 824 KVFNMFFTGGEGDRG-KHGSGLGLAICSGMIGAHGGRIEALPGPGGRGTTIATHLP 878 >gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] Length = 911 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 13/229 (5%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621 ++A IK+ F+ ++S+ELR+PL +IGFT LKTS L Q+ Y++ I S+ LL Sbjct: 277 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 332 Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 ++ND+LD + ++A + L + L L+EV +A HE + + + ++ Sbjct: 333 CIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 392 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736 + D RL QI + +L NA+ F+ +G+ IL A + + + + G I E Sbjct: 393 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTGIGISESQQS 452 Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782 +F F RR G GLGL I E + GG ++ S D G T Sbjct: 453 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGST 501 >gi|218438104|ref|YP_002376433.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170832|gb|ACK69565.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 373 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 123/241 (51%), Gaps = 9/241 (3%) Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 AE+A+ E ++ E+K+ F V++E R+P+T I+G LL+ L ++ +Y+ Sbjct: 125 AEKAIRVALEKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHLQLPEERRREYL 184 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHENN 666 I S + NL+ND+L + V++G +K + + L DL++E++ + + N Sbjct: 185 SLIQQSIRSMENLLNDVLCVGRVESGSLKFEPALLDLEQFCRDLIDEMQFNAGS-----N 239 Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726 ++ G D++ L I +LSNA+ +S +G + L + + +K++ Sbjct: 240 YQLIFQHQGNCEQICLDKKLLRHILVNLLSNAIKYSPEGGKIYLTISCQEEEVTIQIKDS 299 Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786 G IP + K +F F + G G GLGL++V+ ++LHGG ++I+S TT Sbjct: 300 GIGIPLENQKHLFEPFQRAMNVGTIPGTGLGLTMVKKCLDLHGGEITINSEPGIGTTATV 359 Query: 787 R 787 R Sbjct: 360 R 360 >gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 975 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615 ++ E L + D K +F +VS+E R+PLT ++G D+L + G+L ++ ++ + Sbjct: 319 KRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLAS---GTLPEAAARELDVVHR 375 Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 ++T LL LVN +LD + ++AG ++ ++ + L ++ S + + + V Sbjct: 376 NATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPP 435 Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 F DR+ +I +LSNA F+ +G+ + AR G + + G+ IP + Sbjct: 436 LPAPFYVDREMWEKIVLNLLSNAFKFTFQGTITVRLRAR-TGQAWLEILDTGTGIPPEDL 494 Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 +F RF V A G G+GL++V+ L GG V + S Sbjct: 495 PHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVES 537 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 19/250 (7%) Query: 549 VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-----SL 602 +R E +L E + EAL++A ++++ F+ S+EL++PL +L++ S LG SL Sbjct: 733 MRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERS-LGPESRLSL 791 Query: 603 NSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 S+ S ++ LN LV +LD++ + G + L+ + L +++ E + + Sbjct: 792 ASRLS-----VAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGS 846 Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + V + L G + DR R ++ +L NA+ + +G + ++A ++ G Sbjct: 847 LERAGCSLTVEVERPLVGRY--DRVRFERVVMNLLDNALKYG-EGKPLRVRAWKEQGISR 903 Query: 721 FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 +V + G I PED + +F RF Q G+GLGL I + HGGH+ + S+ Sbjct: 904 LTVADQGMGISPEDQAR-IFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPG 962 Query: 780 GVTTINCRIP 789 TT +IP Sbjct: 963 QGTTFTVQIP 972 >gi|293409372|ref|ZP_06652948.1| TMAO reductase system sensor TorS [Escherichia coli B354] gi|291469840|gb|EFF12324.1| TMAO reductase system sensor TorS [Escherichia coli B354] Length = 904 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 KA + K++F+ +S+E+R+PL I+G LL + +LN+ Q + I+ S LL + Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLSDNP--ALNT-QRDDLRAITDSGESLLTI 485 Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680 +NDILD + ++AG ++ S LL Q ++ ++ I + I+D + Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTAL 545 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 + D +R+ Q+ + +LSNA+ F+ +G +IL++ D ++ V+++G I +F Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604 Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 FV + G+R G GLGL+I GG +S +S+ E + R+P Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651 >gi|283783077|ref|YP_003373831.1| sensor histidine kinase/response regulator [Gardnerella vaginalis 409-05] gi|298253499|ref|ZP_06977289.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1] gi|283441178|gb|ADB13644.1| sensor histidine kinase/response regulator [Gardnerella vaginalis 409-05] gi|297532266|gb|EFH71154.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1] Length = 391 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 13/233 (5%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A E E L AD+++ + +VS+ELR+P++ +L+ G ++ S +E I Sbjct: 149 AFNEMAEELEHADQMRRELIANVSHELRTPVS---ALQAMLENLADGVVDPTPSN-MEAI 204 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671 + L +L+ +LDL+ V+AG LN ++ D ++E+ + IA H +NI +++ Sbjct: 205 LNQTHRLADLITFLLDLSRVEAGAESLNITSFNFTDFIDEIIEPLEIADSGHNHNIEVQI 264 Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729 + +L D+ RL Q+F+ I+SNA+ S G+ V++ A I +V N G Sbjct: 265 NDEIEL---TGDQARLSQLFTNIISNALKHSDDGTRVLISAHINHSQNSVICNVVNFGEQ 321 Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 IP++ +F RFV R + G GLGLSI LH G V + G Sbjct: 322 IPQEDRADIFRRFVKGNQRIGTESGGTGLGLSIARWAAQLHHGTVKVVDDKRG 374 >gi|229145141|ref|ZP_04273533.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228638339|gb|EEK94777.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] Length = 312 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 82 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311 >gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 844 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 29/246 (11%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 +L N+ L +A K+ F+ ++S+E+R+P+ +IG T LL ++L +Q +YVE Sbjct: 172 SLVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTEL---TDEQREYVEAT 228 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672 +S+ +L ++NDILD + +++G + L L+ + E +A K E ++ + + Sbjct: 229 RSSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSV 288 Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA------RDNGD------- 718 D V D RL QI ++ NA+ F+++G I +K A RD Sbjct: 289 DDAIPKILVGDVTRLRQILVNLIGNAVKFTNEGEVFIQVKPAPKHFNDRDRSASSITGPD 348 Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGG 770 FSV++ G IP D +F F + H G G GLGL+I + L GG Sbjct: 349 MWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDASTTRHYG---GTGLGLAICKKLSELMGG 405 Query: 771 HVSISS 776 + + S Sbjct: 406 DIQVES 411 >gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 734 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%) Query: 552 ERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610 E+ L E +NEAL +A +K+SF+ ++S+E+R+P+ I+G T++L S K+ + Sbjct: 216 EKQLVEARNEAL-QASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQNPESGIKKK---I 271 Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670 + I S+ LL+L+N ILDL+ +++G ++L S L+ EV ++ + + Sbjct: 272 QIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSKGLDLH 331 Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKN 725 +S+ +F D RL QI +L NA+ FSS+G+ ++I+ + R + VK+ Sbjct: 332 ASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQIQVKD 391 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780 G + E K +F+ F R+ G GLGLSI + + L G + + S +EG Sbjct: 392 QGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKPNEG 449 >gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 873 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 28/354 (7%) Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRN---IAATCSRY 490 E +H + + + PDG I N AF L + + SPG ++ A T + Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALL 301 Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV----NVT 546 I ++ R+ LEL S + N + +L F+ ++T Sbjct: 302 SQSVRSHSPVRVEILNYTKSRRPYWVELEL--------SPVFDENGE-LLRFIAVERDIT 352 Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606 D E+ L+ + +KA + K+ F+ ++S+E+R+P+ I+G +++L L + N ++ Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRRE 408 Query: 607 S-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665 + + + S+ L+ ++NDILD + V+AG + L L L+ A + + Sbjct: 409 PRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468 Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 N+++ V + + V D+ R+ QI ++ NA+ F+ +G V+LK F FSV Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFSVS 527 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 + G IPED + ++F RR G GLGL+I + I+++ G + + S Sbjct: 528 DTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHS 581 >gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] Length = 935 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 129/250 (51%), Gaps = 19/250 (7%) Query: 539 MLTFVNVTDSVRAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL- 593 ++ + V S+R + A+ +K+ EA KA K+ F+ +S+E+R+P+ I+G T L Sbjct: 529 VIMVITVIASLRVKNAIMQKDVIRAEAENKA---KSEFLSRMSHEIRTPMNAIVGTTALI 585 Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652 +K S+ ++ + A+S LL L+NDILD++ +D G++ + L LL+ Sbjct: 586 AMKDDIPESIKGNLAK----LKATSQYLLGLINDILDMSRIDNGMLSIAEEDFSLQQLLD 641 Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-- 710 E+ + ++ I + + + D RL Q+ ++SNA+ F+ G TV L Sbjct: 642 ELCSMMQSQSKAREIALCCETGFRHSDLKGDAIRLKQVLMNLVSNAIKFTPPGGTVHLTV 701 Query: 711 --KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766 AA D ++F V + G I + + +F FV + A+R + +G GLGL I ++ + Sbjct: 702 EETAATDLQAVYLFKVTDTGIGIRAEDLERIFESFVQTGANRMRSQGTGLGLPISQNIVQ 761 Query: 767 LHGGHVSISS 776 L GG + + S Sbjct: 762 LMGGTLRVKS 771 >gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913] gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 940 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 12/223 (5%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASST 618 + LR+A+E+K+ F+ ++S+E+R+PLT I+ TD L + G ++Q Q + I S Sbjct: 469 QELREANEVKSQFLANISHEIRTPLTAILAQTDDLIS---GQYKAEQLQDELRVIQRQSE 525 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 L +L+ND+LDL+ ++A ++LN S + L+N+V + + + + I + +LG Sbjct: 526 HLRSLINDVLDLSKIEANRLELNISCFDMVRLINDVHAMFSPQTKAKGLSL--ILESQLG 583 Query: 679 SFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735 D R+ QI + +NA+ F+ KG I + D G +F +++ G + Sbjct: 584 DTYFTRLDLTRVKQILINLCANAIKFTHKGHVTIAVSKTDQG-LLFCIQDTGIGMSSSQL 642 Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776 K +F F + RR G GLGLS+ + + GG++S+ S Sbjct: 643 KLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQS 685 >gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] Length = 675 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 13/257 (5%) Query: 543 VNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595 +++T+ +AE T+ EA +A E +K+ F+ VS+ELR+PL ++G+ LL Sbjct: 265 IDITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 324 Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655 ++ + I S+ ++L++D+LD++ + +G + L + L D+L + Sbjct: 325 MRPYDEAMFRRG--LAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 ++I E I I + D RL Q+F +L+NA+ F+ +G + + Sbjct: 383 ETIEPMAREKQITIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHAS 441 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773 + +V++ G I VF+RF RR G+GLGL+I + + LH G ++ Sbjct: 442 PEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501 Query: 774 ISSSDEGV-TTINCRIP 789 +S+ + TT+ +P Sbjct: 502 ATSNGTNLGTTMTVTLP 518 >gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] Length = 996 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 131/264 (49%), Gaps = 15/264 (5%) Query: 522 SDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579 S +V+EY + ML +N +T +AE L A A++ K++F+ ++S+E Sbjct: 193 SAAVVEYQGV---GDTLMLVGINRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHE 249 Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639 LR+PL I+G LL S L +Q+ Y A++ LL L+NDILD + ++AG M+ Sbjct: 250 LRTPLNAILGMLALLLKS---GLTHRQADYATKSEAAAQALLRLLNDILDYSKIEAGKME 306 Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698 L L LL ++ +A+ H+ + + D +L + + D RL Q+ + NA Sbjct: 307 LEAEPFNLCALLQDLAVILASNSHKKPVEVLFDIDPRLPRWLIGDSLRLQQVLINLGGNA 366 Query: 699 MDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752 + F+ +G V +++ N F V++ G I + + +F+ F RR Sbjct: 367 LKFTEQGEVVLFIHLIEQDAQNATLHFGVRDTGIGIAPEKQRLIFSGFSQAEASITRRFG 426 Query: 753 GVGLGLSIVESFINLHGGHVSISS 776 G GLGLSI + F+ + G + + S Sbjct: 427 GTGLGLSISQRFVAMMGSTLELES 450 >gi|317132021|ref|YP_004091335.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] gi|315470000|gb|ADU26604.1| integral membrane sensor signal transduction histidine kinase [Ethanoligenens harbinense YUAN-3] Length = 502 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 18/233 (7%) Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613 A +L +E++ SFV +VS+ELR+P+T+I GF D + + + KQ Y++ + Sbjct: 263 AFNNMAASLVSLEEMRRSFVANVSHELRTPMTSIAGFIDGILDGTIP--HEKQEYYLQIV 320 Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673 S L LV +L++A ++AG + + S + + + V + E ++ ++ + Sbjct: 321 SDEVKRLSRLVYSLLNIARIEAGEVHIQQSRFDVAETIRRVIVGFEYAIDEKHLTVEGMD 380 Query: 674 DGKLGSFVADRQRLL--------QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725 D +ADRQ ++ QI ++ NA+ FS++G TV + A SVKN Sbjct: 381 D------LADRQLMVMADPDVTHQILFNLVENAVKFSNEGGTVSITTASRGHRVYVSVKN 434 Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 G IP VF RF + ++GVGLGL IV S + L G +++ S Sbjct: 435 TGMGIPAQDLPHVFERFYKTDKSRSTDKKGVGLGLYIVRSMLLLQGQDITVKS 487 >gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 883 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L EK L ++ + K+ F+ ++S+ELR+PL +I+ +++L+ + L+ + + I Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673 +S LL L+NDILDL+ V+AG + + + ++D+ + Q+ + N+ + S Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588 Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721 D F D +R+ QI +LSNA F+ KGS + + D + D+I Sbjct: 589 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648 Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779 SVK+ G I ++ + +F F R+ G GLGLSI + F L GG +++ S+ Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708 Query: 780 GVTTINCRIPS 790 +T IPS Sbjct: 709 EGSTFTVFIPS 719 >gi|229055111|ref|ZP_04195540.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603] gi|228721233|gb|EEL72760.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603] Length = 281 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RK+ E + + ++S+++R+PLT+IIG+ D LK S KQ +Y+E + S L + Sbjct: 47 RKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQ-EYLEILYKKSNDLKH 105 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV++I ++A +DA L + +++ EV ++ ++NI ++V+ +A Sbjct: 106 LVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTSPIIA 165 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741 D L++I ++ NA+ G V ++ N ++ + + G IP+ ++VF R Sbjct: 166 DHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKHDLQNVFKRM 225 Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 + S R G GLGLSI ++ + +GG + + S TT +P Sbjct: 226 YRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVP 274 >gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] Length = 394 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L + E R+A E K F+ ++S+++R+P+ IIGF+DLL K K +Y+ I Sbjct: 3 LKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLDNEEKVREYLGKIK 60 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 +S IL+ +++ +L++A +++G L L++L V + + + I + ++ Sbjct: 61 SSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSIDTN 120 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSS 729 + D+ +L +I+ I+SNA+ ++ G + + N D ++F ++ G Sbjct: 121 VQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGIG 180 Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787 + + +F+ F A + G GLGLSIV+SF+ L G + + S T Sbjct: 181 MASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFTVE 240 Query: 788 IP 789 IP Sbjct: 241 IP 242 >gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii L2-6] Length = 978 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 143/264 (54%), Gaps = 19/264 (7%) Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 +L + T + +AL++ A A+ K++F+ ++S+++R+P+ IIGFT L Sbjct: 438 ILVMSDRTADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTL----A 493 Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 + +++ K+ Y+ ASS+ LL+L+ND+LD++ +++G + L + L+++L+++K Sbjct: 494 ISNIDDKERVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKT 553 Query: 657 SIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712 ++ +++ + + + + D D+ RL QI +LSNA+ F+ G TV ++ Sbjct: 554 IVSGQIYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQL 613 Query: 713 ---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765 R G + F +K+NG + + K +F F S R Q G GLG++I ++ + Sbjct: 614 AGQVRGCGQYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQ--GTGLGMAITKNIV 671 Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789 ++ GG + + ++ + R+P Sbjct: 672 DMMGGTIEVQTAQGKGSEFIIRVP 695 >gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 641 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%) Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607 S++AE A + E A+ +K+ F+ +S+ELR+PL I+G++ L+++ N + Sbjct: 243 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 299 Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664 + I S+ +++D+LD++ + +G ++L + L+ E+ Q A + Sbjct: 300 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALT-RK 356 Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724 + + DG+L F D RL Q+ + +LSNA+ F+ G TV + ++ V+ Sbjct: 357 IALELDAPCDGEL-WFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQ 415 Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780 + G I + VF+RF RR G+GLGLSI ++LHGG + SS+ EG Sbjct: 416 DTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 473 >gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 663 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 22/251 (8%) Query: 543 VNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598 V+V + A RA + ++ R A + K+ F+ ++S+ELR+PLT+I+GF+ L+ Sbjct: 251 VDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLIGAG- 309 Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLND----LL 651 G L++ Y++ I ++ LL +VNDILD + ++AG + L+ +S L + LL Sbjct: 310 -GDLSASDRGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEGATALL 368 Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TV 708 E ++ + + D +L V D RL Q+ +L NA+ F+ +G+ ++ Sbjct: 369 REQAEAKGLVLSCEILGAGPAGDARL---VGDVTRLRQVLLNLLGNAVKFTERGNVRLSL 425 Query: 709 ILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765 ++ A+D SV + G + + +F RF RR G GLGL+I + Sbjct: 426 SVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRRLM 485 Query: 766 NLHGGHVSISS 776 ++ GG + S Sbjct: 486 DVMGGEIGARS 496 >gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides sp. 4_3_47FAA] gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_40A] gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides sp. 4_3_47FAA] gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides sp. 3_1_40A] Length = 757 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 6/236 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 VN+ + E L + +A E+K SF+ ++S+E+R+PL I+GF++LL T K S Sbjct: 512 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNIS 570 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 K+ ++ I ++ +LL LVND+L+L+ +++G M + + V Q+ Sbjct: 571 EEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVI 629 Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720 + IK D + + DR RL Q+ + L NA F+S+G + ++ + Sbjct: 630 ILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIH 688 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 V++ G+ IP++ + +F RF Q GVGLGL+I + + GH+ + S Sbjct: 689 IFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISKVIVEKMNGHIDVQS 742 >gi|294624915|ref|ZP_06703570.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600794|gb|EFF44876.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 726 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 124/247 (50%), Gaps = 15/247 (6%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 RA+T R A++ K+ F+ ++S+E R+PL + G T++L T++ L+++Q + + Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672 I AS+ LL+LV ++LD++ ++AG ++++ L +++ V + + + Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYGTE 289 Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725 + + D L Q+ +L NA+ F+ G V+L+ AR +G+ F V++ Sbjct: 290 VATDVPDLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARLSGNGADTVRLRFDVED 348 Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782 +G +P DM +F F A G R G GLG +I + + GG + + + G + Sbjct: 349 SGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGGS 407 Query: 783 TINCRIP 789 +P Sbjct: 408 VFWFELP 414 >gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas salmonicida subsp. salmonicida A449] gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 770 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 12/233 (5%) Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609 R +TE+ + L KA K +F+ +S+ELR+PL I+G + +L + L+ +Q Q Sbjct: 264 RDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---PLDPRQHQQ 320 Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669 ++ I S+ L N+ NDI+DL +D +++ + I L L+E++ + + + + Sbjct: 321 LKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYL 380 Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSV 723 DG + FV AD RL Q+ ++ NA+ F+ +G + AA G F V Sbjct: 381 HFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHAADVPGKLALHFEV 440 Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 ++ G IP + +F + + G G+GL++ + GG + + S Sbjct: 441 EDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDS 493 >gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 444 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618 N L +A +K+ F+ +S+ELR+P+ IIGF+ +L K G L +Q+ VE I + Sbjct: 164 NFKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGK 223 Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678 LL L+N++LD + ++ G ++L L ++N V + + + ++V D + Sbjct: 224 NLLMLLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQP 283 Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738 D R+ QI +LSNA+ F+ G I +V++ G I K + Sbjct: 284 LVFNDSVRVRQILINLLSNAIKFTESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHI 343 Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776 F F V + + G GLGL+I++S + + GG + + S Sbjct: 344 FEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILES 383 >gi|170738329|ref|YP_001779589.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169820517|gb|ACA95099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 656 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 25/310 (8%) Query: 502 AIITSFDDERKSLQGTLELLSDSV------LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555 A+ SF D R + G L++L ++ P+ +AQ +++T ER Sbjct: 192 AVPASFADLRAPV-GPLDVLCVRPNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRR 250 Query: 556 TEKN--EALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603 +E++ +LR A + +K+ + VS+ELR+PL I G+ ++L+ + Sbjct: 251 SERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWAEVLRNADGQDF- 309 Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663 Q V+ I S+ L ++V D+LD +++ G ++L + L + + + + T Sbjct: 310 --AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIARDAARELDTTAQ 367 Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723 N + + AD +RL Q+ S +LSNA+ F+ G V + R SV Sbjct: 368 ANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRVNVSLTRAGERVRLSV 427 Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781 + G I + +F F A +RG+GLGLSIV + LHGG V +S+ G Sbjct: 428 SDTGQGIAPEYLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGR 487 Query: 782 -TTINCRIPS 790 T+ +P+ Sbjct: 488 GMTVTVTLPA 497 >gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 930 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 122/225 (54%), Gaps = 11/225 (4%) Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623 +A+ IK+ F+ ++S+E+R+PL IIGF LL S +L+S+Q +++E + +S LL+L Sbjct: 268 EANRIKSQFLANISHEIRTPLNGIIGFCQLLGRS---ALDSRQREWLEQVQTASDNLLSL 324 Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVA 682 ++D+LD + ++AG ++L + + L++EV A ++ + ++ D + Sbjct: 325 ISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTAQRKSLHLLGLVYDDVPDQLLG 384 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSV 738 D R+ QI + +++NA+ F+ +G V+ D + SV++ G + + + Sbjct: 385 DPLRIKQILTNLVNNAVKFTERGEVVVRVMLDDLNATSSKLRISVRDTGIGLDLPSRERL 444 Query: 739 FNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSI-SSSDEG 780 F F +A R ++ G GLGL I + + GG + + S S EG Sbjct: 445 FQAFSQGDASRSRKYGGTGLGLMISKRLVEQMGGDIDVESESGEG 489 >gi|322370252|ref|ZP_08044814.1| multi-sensor signal transduction histidine kinase [Haladaptatus paucihalophilus DX253] gi|320550588|gb|EFW92240.1| multi-sensor signal transduction histidine kinase [Haladaptatus paucihalophilus DX253] Length = 457 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 162/346 (46%), Gaps = 45/346 (13%) Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRN--IAATCSRYYNES 494 ID EG+A+ D R N A+ +L++ + L + T + + +A S + Sbjct: 137 IDTTREGIALLTDDFRFNYVNDAYANLFEYDAETLIGRNWATTLTDDAVATLSSEVVSTV 196 Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554 D ++ IT + ++L TL +I P+ + + +VT+ E+A Sbjct: 197 DAAGEWSGEITGERKDGRTLALTL----------TISAAPDDEYVCAVRDVTERKEREKA 246 Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614 L +NE L + F VS++LR PL+ + G+ DL + + +S++ + I Sbjct: 247 LVRENERL-------DEFASQVSHDLRGPLSIVYGYLDLAR-------KTGESEHFDEIE 292 Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674 ++ + +++D+L++A G L T+VL++ +V I + E+ +D Sbjct: 293 RAANRIEAIISDLLEIAR--EGQKTLKLETVVLDEFAADVWDGIES---ESATVDTGPAD 347 Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734 G+L +ADR RL ++F+ + NA++ TV + + D F V ++G IP++ Sbjct: 348 GRL---LADRDRLTELFANLFRNAVEHGGDDVTVSVGSTCDG----FYVADDGHGIPDEH 400 Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780 K V + + + G GLGLSIV+ + HG +SI SD G Sbjct: 401 RKQVLQ----SGYSTEEVGTGLGLSIVQQIADSHGWSLSIDESDAG 442 >gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 1113 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612 + + ++N+ L+ A+++K+ F+ S+ELR+PL +IG + L + G +N+ ++ Sbjct: 427 QVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPINAAHKYQLDI 486 Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670 I +S L LV+D+LD + G + ++ + + L++ V + + + IRI + Sbjct: 487 IISSGQRLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQ 546 Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730 V + + AD QRL Q+ ++ NA+ ++S+G VI A R + V + G I Sbjct: 547 VAEEAPVW-VSADAQRLEQVLYNLIGNAIKYTSEGKIVI-SATRVDQHIRVQVVDTGQGI 604 Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788 P + + +F + H R+G GLGLSI I L G + +SS TT + + Sbjct: 605 PAEQLEHIFEPLIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTL 664 Query: 789 P 789 P Sbjct: 665 P 665 >gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625 ++++ FV +VS+EL+SPLT+I G ++L + + ++Q +Y++ I S L +L++ Sbjct: 367 EKLQREFVANVSHELKSPLTSIKGSAEILLDGIIEN-EAQQKEYLKMILKESNSLAHLID 425 Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADR 684 + L LA +D+G ++LN I + L +++ K E ++ + +D +L A+R Sbjct: 426 ETLTLAEIDSGGVELNKEKIKVKTLFQDLEIFFDNIKKEEQSLEFEFEADLEL---YANR 482 Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742 +++ Q+ +L+N++ +S+K + LKA + SV +NG IP+ K+++ RF Sbjct: 483 EKIRQVLINLLTNSVKYSAKKGKIKLKALQMAEKIKISVSDNGIGIPKAEQKNIWERFYK 542 Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 + A R GLGL+IV+ I H G +++ S +T + +P+K Sbjct: 543 IDKARTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGSTFSFILPNK 591 >gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1370 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602 V++T+ +R ER L +A A++ K+ F+ ++S+E+R+P+ I+G LL+ S+ L Sbjct: 612 VDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSE---L 668 Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662 ++ S+ LL+++NDILD + +++G + L L+ LL + + T + Sbjct: 669 PQAAKDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAI 728 Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718 + + V K ++ D RL Q+ ++ NA+ F+ +G + A + + Sbjct: 729 SAKPVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQGEVTLSVRAFPSPEVGK 788 Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774 +FSV++ G IP + +F+ F+ RR G GLGL+I + L GG + + Sbjct: 789 IKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQLEV 848 Query: 775 SSS 777 S+ Sbjct: 849 QST 851 >gi|229150754|ref|ZP_04278968.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228632841|gb|EEK89456.1| Sensor histidine kinase [Bacillus cereus m1550] Length = 312 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+A++ K+ + +VS++LR+PLT+I+G+ +L+ + Y++ I T L Sbjct: 82 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 L+ND+ + V + L I + +LL ++ + E NI + + +A Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D +L+++F ++ NA+ + S+G + L A N + N G IP +F RF Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791 V + G GLGL+I +S + LH G + + S DE T +P K Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311 >gi|254487694|ref|ZP_05100899.1| signal transduction histidine kinase [Roseobacter sp. GAI101] gi|214044563|gb|EEB85201.1| signal transduction histidine kinase [Roseobacter sp. GAI101] Length = 568 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 12/250 (4%) Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKT 596 +TFV++TD + AL EALR+ADE K+ F+ VS+ELR+PLT++ G L + Sbjct: 304 ITFVDITDRIAISAAL---EEALRQADEANKAKDEFISVVSHELRTPLTSLTGGLTLALS 360 Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656 +LG + + + L LV++IL + +D + L + L LL E + Sbjct: 361 GRLGDVADPIRSLLNIAHRNGVRLSRLVDNILLVQKIDIDALILESKPVDLGHLLEESFE 420 Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715 KM + +++ + + + D + QI ++SNA+ FS++ S V Sbjct: 421 E--NKMFASKRGVQLALGNIMPAVITGDAFAIRQIIDNLISNAIKFSNENSVVEGTLIAM 478 Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773 NG S+KN G IPE M VF RF V N+ + +G GLGL I + G +S Sbjct: 479 NGQVRLSIKNAGRGIPEGMESQVFGRFEQVENSGQSSTQGSGLGLHISKKLAKQMSGDIS 538 Query: 774 ISSS-DEGVT 782 S D G T Sbjct: 539 YESQLDVGTT 548 >gi|187935295|ref|YP_001885677.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187723448|gb|ACD24669.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 317 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 RKA + KN + +VS++LR+PLT+IIG+ +++ + K + Q +Y I+ + LN Sbjct: 90 RKAQKTKNDLITNVSHDLRTPLTSIIGYLEIIDSDKYK--DEIQLRYYANIAYEKSKSLN 147 Query: 623 -LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680 L+ND+ +L + +KL I L +LL +V + ++ ++ S+ KL Sbjct: 148 LLINDLFELTKMQNNTIKLEKVKINLVELLGQVIAYFKCQFDNEKMKARIKFSEDKL-IV 206 Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740 AD ++L++ F +LSN++ + G V + + I + N G +IP +F+ Sbjct: 207 NADAEKLVRAFENLLSNSIKYGRDGYYVDIITKSEGDMAIVQIINYGEAIPAIDLPYIFD 266 Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 RF + + G GLGL+I ++ I LH G +S + SDE T R+P Sbjct: 267 RFYRIEKSRNSDIGGSGLGLAITKNIIELHQGRIS-AYSDENKTIFEVRLP 316 >gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 956 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601 V+V+ V+ E +L E A +A + K+ F+ VS+ELR+PL IIG DLL+T + Sbjct: 445 LVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---A 501 Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661 L + V ++ SS +LL +++DILD + +++ +K+ +++ + + Sbjct: 502 LPQGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPL 561 Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720 + + + + + + ++ D RL Q+ S +L+NA+ F+ G +IL+ + Sbjct: 562 VVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVCTRSSYLE 620 Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778 FSV++ G IPE +F+ F QR +G GLGL+I E IN+ G +++ S Sbjct: 621 FSVRDTGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEP 680 Query: 779 EGVTTINCRIP 789 + RIP Sbjct: 681 GLGSLFTIRIP 691 >gi|257871362|ref|ZP_05651015.1| histidine kinase [Enterococcus gallinarum EG2] gi|257805526|gb|EEV34348.1| histidine kinase [Enterococcus gallinarum EG2] Length = 394 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 117/219 (53%), Gaps = 3/219 (1%) Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622 R+ ++ K+ + +VS+++R+PLT+IIG+ L++ + S + +Y + + + Sbjct: 155 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 213 Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682 LV+D+ + V + +N + + L+ ++ + I+I+ + + Sbjct: 214 LVDDLFEYTKVRQPSVPINVISFDMAQLVEQLAADFELEASRKGIKIETHTRPEHIIMDG 273 Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742 D ++L+++F+ +LSNA+ + ++++ + + I +VKNNG IP+ S+F+RF Sbjct: 274 DTEKLVRVFNNLLSNALKYGKGADKIVMEVEKVGTEAILTVKNNGQMIPKHSLDSLFDRF 333 Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 V + + G GLGL+I +S + LHGG++ S+ + Sbjct: 334 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIFAKSTPD 372 >gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 512 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 120/219 (54%), Gaps = 4/219 (1%) Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619 E L++ +E++ F+ +VS+ELR+P+T+I GF + + + +Q Y+ + + Sbjct: 275 EDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPP--ERQKGYLTIVRDETNR 332 Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679 L LVND+LDLA +++G + L +N+L+ + T + N+ I+ + Sbjct: 333 LNRLVNDLLDLAKMESGELTLTMKPFDINELIRICVIKLETLITSKNLEIEANFEIDNMM 392 Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739 AD+ + ++ +L NA+ FS++ +I++ A++ SVK+NG I D K ++ Sbjct: 393 VSADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKDKIYVSVKDNGIGIDGDDKKRIW 452 Query: 740 NRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGG