RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764476|ref|YP_003065238.2| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
(792 letters)
>gnl|CDD|32387 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 136 bits (344), Expect = 2e-32
Identities = 57/235 (24%), Positives = 116/235 (49%), Gaps = 4/235 (1%)
Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYIS 614
E+ + + ++++ + +S++LR+PLT I+G + L +L+ + +++ + I
Sbjct: 647 AEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLL-DGEALSPEDRAELLSSIR 705
Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
S L LV ++LD+ + +G + L +++ +++ E Q + + + I + V D
Sbjct: 706 EESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTGHKIVVSVPVD 765
Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
L D + Q+ +L NA+ ++ GS + + A + + +FSV + G IPE
Sbjct: 766 LPLIH--VDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGE 823
Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
+ +F++F RGVGLGL+I + HGG +S ++ G +P
Sbjct: 824 LERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLP 878
>gnl|CDD|30987 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 336
Score = 133 bits (335), Expect = 2e-31
Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%)
Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
A R K F+ ++S+ELR+PLT I G +LL L Q + +
Sbjct: 97 AHALNELLERLERLLRRAKREFLANISHELRTPLTAIRGLLELLLEGLL----DPQRELL 152
Query: 611 EYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
E I + LL LVND+LDL+ ++AG +KL + L +LL EV + +A E I +
Sbjct: 153 EIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIEL 212
Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
V +L + D +RL Q+ +LSNA+ ++ G + + +D+ SV++ G
Sbjct: 213 AV-DLPELPYVLGDPERLRQVLVNLLSNAIKYTPGG-EITISVRQDDEQVTISVEDTGPG 270
Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
IPE+ + +F F R G GLGL+IV+ + LHGG +S+ S TT R+P
Sbjct: 271 IPEEELERIFEPFFR--TDKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLP 328
Query: 790 SKE 792
Sbjct: 329 LAP 331
>gnl|CDD|34607 COG5002, VicK, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 459
Score = 98.5 bits (245), Expect = 7e-21
Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 38/310 (12%)
Query: 518 LELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALR----------- 563
L + + L SI+ L + TF V DS+ + + E+ LR
Sbjct: 144 LGVSKEDALGRSILELLKIEDTYTFEDLVEKNDSLLLDSSDEEEGYVLRVNFSVIQRESG 203
Query: 564 ----------------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
K + + FV +VS+ELR+PLT++ + + L+
Sbjct: 204 FISGLIAVLHDVTEQEKVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAP- 262
Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHEN 665
+++ + ++ LVND+L L+ +D +LN I LNE+ + + K
Sbjct: 263 RFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETI 322
Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
++ I + +V D ++ Q+ I+SNA+ +S G + + + S+
Sbjct: 323 ARFVRDIPKQDI--WVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISIS 380
Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
+ G IP++ + +F+RF V A + G GLGL+I + + HGG + S + T
Sbjct: 381 DQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGT 440
Query: 783 TINCRIPSKE 792
T + +P
Sbjct: 441 TFSFTLPYSG 450
>gnl|CDD|33974 COG4251, COG4251, Bacteriophytochrome (light-regulated signal
transduction histidine kinase) [Signal transduction
mechanisms].
Length = 750
Score = 94.2 bits (234), Expect = 1e-19
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
R L N LR F S++L+ PL I + LL +L+ + +++ +
Sbjct: 515 RELERSNAELRA-------FAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITF 567
Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
IS ++++ L++D+L + + L + + ++++V ++ ++ + I++
Sbjct: 568 ISRLTSLMQQLIDDLLTYSKLGLTEAPLQPTD--VQKVVDKVLLELSQRIADTGAEIRI- 624
Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIP 731
L AD +L Q+F +++NA+ F + I +A D + FSV++NG I
Sbjct: 625 --APLPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGID 682
Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
+ +F F R + G GLGL+I + H G + + S+ +T +P
Sbjct: 683 PAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLP 740
>gnl|CDD|145582 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents the
structurally related ATPase domains of histidine kinase,
DNA gyrase B and HSP90.
Length = 111
Score = 93.5 bits (233), Expect = 2e-19
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
D RL Q+ S +L NA+ + G + + RD G +V++NG IP + +F
Sbjct: 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLRITVEDNGIGIPPEDLPKIFEP 60
Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
F + + G GLGLSIV + LHGG +++ S G TT +P
Sbjct: 61 FFRTDKDSRKVGGTGLGLSIVRKLVELHGGTITVESEPGGGTTFTFTLP 109
>gnl|CDD|28956 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
includes several ATP-binding proteins for example:
histidine kinase, DNA gyrase B, topoisomerases, heat
shock protein HSP90, phytochrome-like ATPases and DNA
mismatch repair proteins.
Length = 103
Score = 82.7 bits (204), Expect = 4e-16
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
L Q+ +LSNA+ + +G I + RD V++NG IPE+ + +F RF
Sbjct: 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG 60
Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
+ + G GLGLSIV+ + LHGG + + S G TT +
Sbjct: 61 SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103
>gnl|CDD|34605 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 76.9 bits (189), Expect = 2e-14
Identities = 75/355 (21%), Positives = 138/355 (38%), Gaps = 49/355 (13%)
Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
+ L+ GV F G I NP+ + ++L G + IA + +
Sbjct: 376 LSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLL-GQSLSAIAPELEEVFAEAGAAAR 434
Query: 497 WDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
D + + + E ++L Q T E D+ Y ++TF ++TD V A+R+
Sbjct: 435 TDKRVEVKLAREGEERTLNVQATREP-EDNGNGY----------VVTFDDITDLVIAQRS 483
Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK---TSKLGSLNSKQSQYVE 611
+ A R A EIKN PLT I + L ++ + +
Sbjct: 484 AAWGDVARRIAHEIKN------------PLTPIQLSAERLLRKLGKEIDEDREVFDRCTD 531
Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
I + +V++ A + A ++ L LL EV S ++ ++I
Sbjct: 532 TIIRQVEDIKRMVDEFRAFARMPAPKLE----KSDLRALLKEV--SFLYEIGNDHIVFAA 585
Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDF-------SSKGSTVILKAARDNGDFIFSVK 724
G+ +AD L Q+F +L NA + + + + + +G + V
Sbjct: 586 EFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVI 645
Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
+NG P + +V+ + +G GLGL+IV+ + HGG + + ++ +
Sbjct: 646 DNGKGFPRENRHRALEPYVTT----REKGTGLGLAIVKKIVEEHGGRLELHNAPD 696
>gnl|CDD|33642 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms].
Length = 363
Score = 75.7 bits (186), Expect = 4e-14
Identities = 71/359 (19%), Positives = 145/359 (40%), Gaps = 52/359 (14%)
Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
+++L V + + I +NPA L RL+ GT + +
Sbjct: 13 LNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLA-GTRLSELLP-------------F 58
Query: 500 FAAIITSFDDERKSLQG------TLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
+ +++ D + Q TL +L +++ ++ P+P + + R
Sbjct: 59 GSLLLSLLDQVLERGQPVTEYEVTLVILGRSHIVDLTVAPVPEEPGSVL---LEFHPRDM 115
Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
+ ++ + V+ +++E+++PL I G LL+ + L + + +
Sbjct: 116 QRRLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERA----LPDEALRELTQ 171
Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
I + L NLV+ + L G + + ++++L V+ + +N+R+
Sbjct: 172 LIIEEADRLRNLVDRLEVLGPQRPG----DRVPVNIHEVLERVRA-LVEAEFADNVRLIR 226
Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAM----DFSSKGSTVILKA----------ARDNG 717
D L + DR +L+Q+F ++ NA + +G +IL+ R
Sbjct: 227 DYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRL 286
Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
V +NG +P D+ +F VS G+ G GLGL++ ++ I+ HGG + S
Sbjct: 287 ALPLEVIDNGPGVPPDLQDHLFYPMVS----GREGGTGLGLALAQNLIDQHGGKIEFDS 341
>gnl|CDD|33926 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 66.8 bits (163), Expect = 2e-11
Identities = 53/265 (20%), Positives = 110/265 (41%), Gaps = 32/265 (12%)
Query: 544 NVTDSVRAERALTEKNEA-LRKADEIKNSFVQ------------HVSYELRSPLTNIIGF 590
++AE A E+ EA LR+A ++ VQ +++EL PL I +
Sbjct: 349 RANARLQAEIAEREQAEAALRRA---QDELVQAGKLAALGQMSAGIAHELNQPLAAIRTY 405
Query: 591 TD----LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
D LL+ + + +E ISA + + + + A +
Sbjct: 406 ADNARLLLERGRTEEA----RENLERISALTERMAAITAHLKSFARKSRDAA----GPVS 457
Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
L + + + + ++ + +++ +A+ RL Q+ +L NA+D +
Sbjct: 458 LREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQE 517
Query: 707 T--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
+ ++A R+ G + +V++NG I + +F F + G+ G+GLGL+I ++
Sbjct: 518 DRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGK--GLGLGLAISQNI 575
Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
GG + +++ EG + +
Sbjct: 576 ARDLGGSLEVANHPEGGASFTIELR 600
>gnl|CDD|144196 pfam00512, HisKA, His Kinase A (phosphoacceptor) domain.
dimerization and phosphoacceptor domain of histidine
kinases.
Length = 66
Score = 64.9 bits (159), Expect = 7e-11
Identities = 29/68 (42%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
K+ F+ ++S+ELR+PLT I G+ +LL ++ L+ +Q +Y+E I S+ LL L+ND+L
Sbjct: 2 KSEFLANLSHELRTPLTAIRGYLELLLDTE---LSEEQREYLETILRSAERLLRLINDLL 58
Query: 629 DLATVDAG 636
DL+ ++AG
Sbjct: 59 DLSRIEAG 66
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via trans-autophosphorylation
by the catalytic domain of the histidine kinase. They
subsequently transfer the phosphoryl group to the Asp
acceptor residue of a response regulator protein.
Two-component signalling systems, consisting of a
histidine protein kinase that senses a signal input and
a response regulator that mediates the output, are
ancient and evolutionarily conserved signaling
mechanisms in prokaryotes and eukaryotes..
Length = 65
Score = 59.5 bits (145), Expect = 4e-09
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
+ K F+ +VS+ELR+PLT I G +LL+ L + +Q +Y+E I + LL L+N
Sbjct: 1 LQAKGEFLANVSHELRTPLTAIRGALELLEEELLD--DEEQREYLERIREEAERLLRLIN 58
Query: 626 DILDLA 631
D+LDL+
Sbjct: 59 DLLDLS 64
>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
[Signal transduction mechanisms].
Length = 786
Score = 50.4 bits (120), Expect = 2e-06
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 10/191 (5%)
Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT-N 586
+ A + T V ++ L A+ + F+ +S+E+R+PL
Sbjct: 182 RMLTHEIRAALDRHTILKTTLVELQKKLASDEAAV--WSPSQKGFLATLSHEIRTPLNGG 239
Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
++G S Q + S+ LL+L+NDILDL+ V++G +L
Sbjct: 240 MLGGLSDTDLD------SDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFD 293
Query: 647 LNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
L LLN V ++ I + +S G + D RL Q+ + ++SNA+ F+ G
Sbjct: 294 LRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAG 353
Query: 706 STVILKAARDN 716
AR+
Sbjct: 354 HLEESVIAREE 364
>gnl|CDD|33099 COG3290, CitA, Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms].
Length = 537
Score = 48.3 bits (115), Expect = 9e-06
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 23/226 (10%)
Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV----DAGIMKLNY 642
II F D + KL + QY E + A S +N ++ IL L + DA
Sbjct: 311 IITFRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQE 370
Query: 643 STI---VLNDLLNEVKQSIA--------TKMHENNIRIKVISDGKLGSFVADRQ--RLLQ 689
S +++ L ++K + ++ E + + + + +L ++ Q L+
Sbjct: 371 SEEQQELIDSLSEKIKDPVLAGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVT 430
Query: 690 IFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
I ++ NA++ + L + + + V + G IP ++ +F + VS
Sbjct: 431 ILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVS-T 489
Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
RG+GL L V+ + GG + + S T + IP +
Sbjct: 490 KNTGGRGIGLYL--VKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533
>gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 37.0 bits (85), Expect = 0.021
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
LN ++ + + + TK I++ +D + + D + Q+ ++ NA+D S+ +
Sbjct: 527 LNSVVEQAWELLQTKHKRRQIKLINPTDDLM--VMGDAVSIEQVLVNLIVNALDASTHFA 584
Query: 707 TVI-LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
I L A ++ +NG P ++ + F ++ + G+GLGLSI +S
Sbjct: 585 PWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS----KEVGLGLGLSISQSL 640
Query: 765 INLHGGHVSISSS 777
+ G ++++S+
Sbjct: 641 MEQMQGRLALAST 653
>gnl|CDD|33706 COG3920, COG3920, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 221
Score = 34.9 bits (80), Expect = 0.092
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 23/197 (11%)
Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
SL Q++ E L N I LA + + K T L + ++
Sbjct: 39 SLLRLQARKFE--DEVLEALRESQNRIQSLALIHELLYKSGDDTWDFASYLELLASNLFP 96
Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD--FSSKGS---TVILKAARD 715
+IR+ + S + L I ++++NA+ F S+ + L D
Sbjct: 97 SYGGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD 156
Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
G F+ +V + G P + + RG G GL +VE + G
Sbjct: 157 GGRFLLTVWDEGGGPPVE----------APLSRG-----GFGLQLVERLVPEQLGGELED 201
Query: 776 SSDEGVTTINCRIPSKE 792
+G T R P E
Sbjct: 202 ERPDG-TEFRLRFPLSE 217
>gnl|CDD|34223 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 34.4 bits (78), Expect = 0.13
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
L +I + L+NA+ + + + V + R + + V +NG D
Sbjct: 280 LFRIVQEALTNAIRHA-QATEVRVTLERTDDELRLEVIDNGVGFDPD------------- 325
Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
+ G G GL + + GG ++I S+ TT+ +P
Sbjct: 326 ----KEGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLP 364
>gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin
structure and dynamics].
Length = 842
Score = 34.1 bits (78), Expect = 0.14
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
L +IF +IL NA D +K D SV NNG IP + K +V
Sbjct: 54 LYKIFDEILVNAADKQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVE-KVYVPEL 112
Query: 747 HRGQ 750
G
Sbjct: 113 IFGN 116
>gnl|CDD|31579 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication,
recombination, and repair].
Length = 538
Score = 32.2 bits (73), Expect = 0.52
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFN 740
L ++++N++D + IL + + V++NG IPE+ VF
Sbjct: 37 LTTTVHELVTNSLDACEEAG--ILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFG 94
Query: 741 RFV--SNAHRG-QRRGV-GLGLSIVESFINLHGG-HVSISSSDEGVTTIN 785
+ + S HR Q RG G+G+S + + G V + SS T
Sbjct: 95 KMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAY 144
>gnl|CDD|144110 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 142
Score = 32.3 bits (74), Expect = 0.56
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
D+ + GQ V+VT+N G W+ + + + +
Sbjct: 93 DSLDIFPGQRYSVLVTANQDPGNYWIVASPRLIPAFDNGTAAAILRYSG 141
>gnl|CDD|39792 KOG4592, KOG4592, KOG4592, Uncharacterized conserved protein
[Function unknown].
Length = 728
Score = 32.0 bits (72), Expect = 0.60
Identities = 17/70 (24%), Positives = 25/70 (35%)
Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
N + +I L FL S E+L+ + L TW E ++ E
Sbjct: 589 LSTETNADILMTTKIGLPFLTKKISRAEILKQSYRESFSQNSLETATWLEVFSDLFNCVE 648
Query: 387 THKDTWHLPN 396
H D + PN
Sbjct: 649 GHLDFKYPPN 658
>gnl|CDD|33640 COG3850, NarQ, Signal transduction histidine kinase,
nitrate/nitrite-specific [Signal transduction
mechanisms].
Length = 574
Score = 32.2 bits (73), Expect = 0.61
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
LLQI + LSNA+ ++ S + + ++++G +V++NG I E A
Sbjct: 482 LLQIVREALSNAIK-HAQASEIKVTVSQNDGQVTLTVEDNGVGIDE------------AA 528
Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
GL+I+ GG + I + G T ++ P +E
Sbjct: 529 EPSGH----YGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPEE 570
>gnl|CDD|32384 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction
mechanisms].
Length = 232
Score = 31.1 bits (67), Expect = 1.3
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 13/153 (8%)
Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
I + D++ + + N + EL S +ELL L + + + +
Sbjct: 1 LILVLDRDGRIIYANEAAEELLGY---------SAEELLGLLLALHPEDRDRLRELLRRL 51
Query: 378 IFSVYKSSE----THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
+ SE KD + + R + ++T + E
Sbjct: 52 LAGEELLSEELRLVRKDGEERWVELSAAPLRDGEGRVLGLLGLRDITERKRAEEALRESE 111
Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
+ ++ +G+ V DGRI +NPA L
Sbjct: 112 ERLRALLEASPDGIWVLDEDGRILYANPAAEEL 144
>gnl|CDD|30988 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 30.7 bits (69), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
G G+G+ +V++ I GG +S+SS TT R+P
Sbjct: 536 GRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLP 572
>gnl|CDD|37045 KOG1834, KOG1834, KOG1834, Calsyntenin [Extracellular structures].
Length = 952
Score = 30.4 bits (68), Expect = 2.1
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 41 IILLIRQRNSLAKKVN--ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII-- 96
+ L+R+ E + L ++CD ++ L E +T+ DGK P +I
Sbjct: 413 LEFLLRRDAGATSDFRPAEFHWKLPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEPPLITD 472
Query: 97 -GQLHQRIDIPQTDTDLLSFENW-------LKFHHYIKLSKATEKLR 135
LH + +T L+ W LK + + A+ LR
Sbjct: 473 DWPLHP----SKIETQLVVGACWQGRQQKPLKLAQFFRGQLASLTLR 515
>gnl|CDD|144739 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 30.2 bits (69), Expect = 2.4
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADR-QRLLQIFSK----ILSNAMD 700
L +LL E + + +H+N +R++VI D L + + + L+ A++
Sbjct: 62 LMELLEEKLRRLLEDLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLNIALN 121
Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
+ + I+ A + VK+ S PED+ + V +++ +
Sbjct: 122 YGGRDE--IVDAVK---RLAEDVKDGKLS-PEDIDEEVIEKYLYTSD 162
>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 28.7 bits (64), Expect = 7.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 44 LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTEN 79
L++QRN+L K++ Y++L QL++ + +
Sbjct: 157 LLKQRNALLKQLQGDYAWLDVWDQQLAELGAEIAAA 192
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,122,316
Number of extensions: 481137
Number of successful extensions: 1277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 39
Length of query: 792
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 690
Effective length of database: 4,059,619
Effective search space: 2801137110
Effective search space used: 2801137110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)